BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046713
(216 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B1Q3J6|DNM1B_ORYSJ DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica
GN=MET1B PE=2 SV=1
Length = 1529
Score = 306 bits (784), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 143/202 (70%), Positives = 160/202 (79%), Gaps = 13/202 (6%)
Query: 1 MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFS 60
MHVF PELK+ L +YAA +STA GAPFRAITVRDTIGDLP V NGAS +E
Sbjct: 1303 MHVFASPELKINLPDGKYYAAAKSTAGGAPFRAITVRDTIGDLPKVENGASKLLLE---- 1358
Query: 61 SPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV--- 117
Y EP+ WFQKKIRG+ + LNDHISK M+ELNLIRCQ+IPK+PG DW LP EKV
Sbjct: 1359 --YGGEPISWFQKKIRGNTIALNDHISKEMNELNLIRCQRIPKRPGCDWHDLPDEKVKLS 1416
Query: 118 ----VDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRII 173
VDLIPWCLPNTA++HNQWKGL+GRLDWEGNFPTSVTDP PMG VG CFHP+QDRII
Sbjct: 1417 SGQLVDLIPWCLPNTAKRHNQWKGLYGRLDWEGNFPTSVTDPQPMGKVGMCFHPDQDRII 1476
Query: 174 TVRECARSQGFSDSYKFVGDIQ 195
TVRECARSQGF D+Y+F G+IQ
Sbjct: 1477 TVRECARSQGFPDNYQFAGNIQ 1498
>sp|Q7Y1I7|DNM1A_ORYSJ DNA (cytosine-5)-methyltransferase 1A OS=Oryza sativa subsp. japonica
GN=MET1A PE=2 SV=1
Length = 1527
Score = 303 bits (776), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 145/203 (71%), Positives = 159/203 (78%), Gaps = 13/203 (6%)
Query: 1 MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFS 60
MHVF PELK+ L YAAV+STA GAPFR+ITVRDTIGDLPAV NGA T++
Sbjct: 1302 MHVFASPELKITLPDGKFYAAVKSTAAGAPFRSITVRDTIGDLPAVENGAGKPTIQ---- 1357
Query: 61 SPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV--- 117
Y S PV WFQKKIR DM LNDHISK M+ELNLIRC+ IPK+PG DW LP EKV
Sbjct: 1358 --YGSGPVSWFQKKIRSDMASLNDHISKEMNELNLIRCKHIPKRPGCDWHDLPDEKVKLS 1415
Query: 118 ----VDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRII 173
VDLIPWCLPNTA++HNQWKGL+GRLDWEGNFPTSVTDP PMG VG CFHP QDRII
Sbjct: 1416 TGQMVDLIPWCLPNTAKRHNQWKGLYGRLDWEGNFPTSVTDPQPMGKVGMCFHPEQDRII 1475
Query: 174 TVRECARSQGFSDSYKFVGDIQH 196
TVRECARSQGF DSY+F G+IQ+
Sbjct: 1476 TVRECARSQGFPDSYRFAGNIQN 1498
>sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana GN=DMT1
PE=1 SV=1
Length = 1534
Score = 279 bits (714), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 133/203 (65%), Positives = 154/203 (75%), Gaps = 13/203 (6%)
Query: 1 MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFS 60
MHVF P+LK+ L++ HYAAVRSTA GAPFR ITVRDTIGDLP+V NG S T E
Sbjct: 1303 MHVFGVPKLKISLSQGLHYAAVRSTALGAPFRPITVRDTIGDLPSVENGDSRTNKE---- 1358
Query: 61 SPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKVV-- 118
YK V WFQK+IRG+ + L DHI KAM+ELNLIRC+ IP +PG+DW LP KV
Sbjct: 1359 --YKEVAVSWFQKEIRGNTIALTDHICKAMNELNLIRCKLIPTRPGADWHDLPKRKVTLS 1416
Query: 119 -----DLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRII 173
++IP+CLPNTAE+HN WKGL+GRLDW+GNFPTSVTDP PMG VG CFHP Q RI+
Sbjct: 1417 DGRVEEMIPFCLPNTAERHNGWKGLYGRLDWQGNFPTSVTDPQPMGKVGMCFHPEQHRIL 1476
Query: 174 TVRECARSQGFSDSYKFVGDIQH 196
TVRECARSQGF DSY+F G+I H
Sbjct: 1477 TVRECARSQGFPDSYEFAGNINH 1499
>sp|P13864|DNMT1_MOUSE DNA (cytosine-5)-methyltransferase 1 OS=Mus musculus GN=Dnmt1 PE=1
SV=5
Length = 1620
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 128/245 (52%), Gaps = 58/245 (23%)
Query: 1 MHVFT--GPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVG 58
+HVF +L V + + + ++G PFR ITVRDT+ DLP + NGAS + +
Sbjct: 1334 LHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASNSEI--- 1389
Query: 59 FSSPYKSEPVLWFQKKIRGDML--VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLP--- 113
PY EP+ WFQ+++RG +L DHI K MS L R + IP PGSDWR LP
Sbjct: 1390 ---PYNGEPLSWFQRQLRGSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQ 1446
Query: 114 --------------------------------------------SEKVVDLIPWCLPNTA 129
S + LIPWCLP+T
Sbjct: 1447 VRLGDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTG 1506
Query: 130 EKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYK 189
+HN W GL+GRL+W+G F T+VT+P PMG G HP Q R+++VRECARSQGF DSY+
Sbjct: 1507 NRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYR 1566
Query: 190 FVGDI 194
F G+I
Sbjct: 1567 FFGNI 1571
>sp|Q92072|DNMT1_CHICK DNA (cytosine-5)-methyltransferase 1 OS=Gallus gallus GN=DNMT1 PE=1
SV=1
Length = 1537
Score = 171 bits (434), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 127/245 (51%), Gaps = 58/245 (23%)
Query: 1 MHVFT--GPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVG 58
+HVF +L V + + + T +G PFR ITVRDT+ DLP + NGAS +E+
Sbjct: 1246 LHVFAPRACQLSVVVDDKKFVSNITRTYSG-PFRTITVRDTMSDLPEIRNGASA--LEIS 1302
Query: 59 FSSPYKSEPVLWFQKKIRGDML--VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEK 116
Y EP WFQ++IRG +L DHI K MS L R + IP PGSDWR LP+ +
Sbjct: 1303 ----YNGEPQSWFQRQIRGSQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIE 1358
Query: 117 VV-----------------------------------------------DLIPWCLPNTA 129
V LIPWCLP+T
Sbjct: 1359 VRLSDGTSTRKLRYTHHEKKNGRSSSGALRGVCSCAEGKPCDPADRQFNTLIPWCLPHTG 1418
Query: 130 EKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYK 189
+HN W GL+GRL+W+G F T+VT+P PMG G HP Q R+++VRECARSQGF D+Y+
Sbjct: 1419 NRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYR 1478
Query: 190 FVGDI 194
G+I
Sbjct: 1479 LFGNI 1483
>sp|Q24K09|DNMT1_BOVIN DNA (cytosine-5)-methyltransferase 1 OS=Bos taurus GN=DNMT1 PE=2 SV=1
Length = 1611
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 127/245 (51%), Gaps = 58/245 (23%)
Query: 1 MHVFT--GPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVG 58
+HVF +L V + + + ++G PFR ITVRDT+ DLP + NGAS +E+
Sbjct: 1328 LHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIRNGASA--LEIS 1384
Query: 59 FSSPYKSEPVLWFQKKIRGDML--VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEK 116
Y EP WFQ+++RG +L DHI K MS L R + IP PGSDWR LP+ +
Sbjct: 1385 ----YNGEPQSWFQRQLRGSQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIE 1440
Query: 117 VV-----------------------------------------------DLIPWCLPNTA 129
V LIPWCLP+T
Sbjct: 1441 VRLSDGTLARKLRYNYHDKKNGCSSSGALRGVCSCVEGKPCEPAARQFNTLIPWCLPHTG 1500
Query: 130 EKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYK 189
+HN W GL+GRL+W+G F T+VT+P PMG G HP Q R+++VRECARSQGF D+Y+
Sbjct: 1501 NRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYR 1560
Query: 190 FVGDI 194
G+I
Sbjct: 1561 LFGNI 1565
>sp|P26358|DNMT1_HUMAN DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens GN=DNMT1 PE=1
SV=2
Length = 1616
Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/246 (39%), Positives = 127/246 (51%), Gaps = 59/246 (23%)
Query: 1 MHVFT--GPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVG 58
+HVF +L V + + + ++G PFR ITVRDT+ DLP V NGAS +E+
Sbjct: 1331 LHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASA--LEIS 1387
Query: 59 FSSPYKSEPVLWFQKKIRGDML--VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLP--- 113
Y EP WFQ+++RG +L DHI K MS L R + IP PGSDWR LP
Sbjct: 1388 ----YNGEPQSWFQRQLRGAQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIE 1443
Query: 114 -------------------------------------SEKVVD--------LIPWCLPNT 128
+ K D LIPWCLP+T
Sbjct: 1444 VRLSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHT 1503
Query: 129 AEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSY 188
+HN W GL+GRL+W+G F T+VT+P PMG G HP Q R+++VRECARSQGF D+Y
Sbjct: 1504 GNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTY 1563
Query: 189 KFVGDI 194
+ G+I
Sbjct: 1564 RLFGNI 1569
>sp|Q27746|DNMT1_PARLI DNA (cytosine-5)-methyltransferase PliMCI OS=Paracentrotus lividus
GN=DNMT PE=2 SV=1
Length = 1612
Score = 168 bits (425), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 113/215 (52%), Gaps = 55/215 (25%)
Query: 29 APFRAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIRGDML--VLNDHI 86
AP+R ITVRDT+ DLP + NGA +E+ Y EP FQKKIRG+ +L DHI
Sbjct: 1352 APYRTITVRDTMSDLPTINNGAQ--KLEIS----YDGEPQSDFQKKIRGNQYQPILRDHI 1405
Query: 87 SKAMSELNLIRCQKIPKQPGSDWRVLPSEKVV---------------------------- 118
K MS L R + IP PGSDWR LP+ V
Sbjct: 1406 CKDMSSLVAARMKHIPLAPGSDWRDLPNIPVTLKDGTTCRKLRYTHKDKKNGKSSTGALR 1465
Query: 119 -------------------DLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMG 159
LIPWCLP+T +HN W GL+GRL+W+G F T+VT+P PMG
Sbjct: 1466 GVCSCAEGDACDPSDRQFSTLIPWCLPHTGNRHNNWAGLYGRLEWDGFFSTTVTNPEPMG 1525
Query: 160 MVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDI 194
G HP Q R+++VRECARSQGF D+Y+F G I
Sbjct: 1526 KQGRVLHPEQHRVVSVRECARSQGFPDTYRFFGSI 1560
>sp|Q9Z330|DNMT1_RAT DNA (cytosine-5)-methyltransferase 1 OS=Rattus norvegicus GN=Dnmt1
PE=1 SV=2
Length = 1622
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 116/247 (46%), Gaps = 62/247 (25%)
Query: 1 MHVFT--GPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVG 58
+HVF +L V + + + ++G PFR IT+RDT+ DLP + NGAS +
Sbjct: 1336 LHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITMRDTMSDLPEIQNGASAPEISYK 1394
Query: 59 FSSPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNL----IRCQKIPKQPGSDWRVLP- 113
+ + VL + R + L H +++ R + IP PGSDWR LP
Sbjct: 1395 WRAT-----VLVPEAAAR---VALPAHPQGPYPQVHERAGGCRMRHIPLSPGSDWRDLPN 1446
Query: 114 ----------------------------------------------SEKVVDLIPWCLPN 127
S + LIPWCLP+
Sbjct: 1447 IQVRLRDGVITNKLRYTFHDTKNGCSSTGALRGVCSCAEGKTCDPASRQFNTLIPWCLPH 1506
Query: 128 TAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDS 187
T +HN W GL+GRL+W+G F T+VT+P PMG G HP Q R+++VRECARSQGF D+
Sbjct: 1507 TGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDT 1566
Query: 188 YKFVGDI 194
Y+ G+I
Sbjct: 1567 YRLFGNI 1573
>sp|Q94F87|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana
GN=CMT2 PE=2 SV=3
Length = 1295
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 97/212 (45%), Gaps = 47/212 (22%)
Query: 22 VRSTANGAPFR---AITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIRGD 78
V + A G P + A+ ++D I DLP V N + PY+S P FQ+ IR
Sbjct: 1039 VVAYAEGQPRKLEKALVLKDAISDLPHVSNDEDREKL------PYESLPKTDFQRYIRST 1092
Query: 79 ---------------MLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKVVD---- 119
++L+DH ++E + R +IPK+ G+++R LP V +
Sbjct: 1093 KRDLTGSAIDNCNKRTMLLHDHRPFHINEDDYARVCQIPKRKGANFRDLPGLIVRNNTVC 1152
Query: 120 ----LIPWCLPNTAE---------KHNQWKGLFGRLDWEGNFPTSVTDP--HPMGMVGTC 164
+ P LP+ + + K F RL W+ PT +T P H ++
Sbjct: 1153 RDPSMEPVILPSGKPLVPGYVFTFQQGKSKRPFARLWWDETVPTVLTVPTCHSQALL--- 1209
Query: 165 FHPNQDRIITVRECARSQGFSDSYKFVGDIQH 196
HP QDR++T+RE AR QGF D ++F G I+
Sbjct: 1210 -HPEQDRVLTIRESARLQGFPDYFQFCGTIKE 1240
>sp|Q9AXT8|CMT1_MAIZE DNA (cytosine-5)-methyltransferase 1 OS=Zea mays GN=MET2A PE=1 SV=1
Length = 912
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 88/199 (44%), Gaps = 42/199 (21%)
Query: 32 RAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIR---GDML-------- 80
+A+ + D I DLP V N ME G S P FQ+ IR DML
Sbjct: 654 KALLLGDAISDLPKVQNHQPNDVMEYGGS------PKTEFQRYIRLSRKDMLDWSFGEGA 707
Query: 81 -----VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV--VDLIPW---------- 123
L DH ++ + R Q+IP + G+++R L +V +++ W
Sbjct: 708 GPDEGKLLDHQPLRLNNDDYERVQQIPVKKGANFRDLKGVRVGANNIVEWDPEIERVKLS 767
Query: 124 ----CLPNTAEKHNQWKGL--FGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRE 177
+P+ A + K L FGRL W+ PT VT P V HP Q R++T+RE
Sbjct: 768 SGKPLVPDYAMSFIKGKSLKPFGRLWWDETVPTVVTRAEPHNQV--IIHPTQARVLTIRE 825
Query: 178 CARSQGFSDSYKFVGDIQH 196
AR QGF D Y+ G I+
Sbjct: 826 NARLQGFPDYYRLFGPIKE 844
>sp|Q9ARI6|CMT2_MAIZE DNA (cytosine-5)-methyltransferase 2 OS=Zea mays GN=ZMET5 PE=2 SV=1
Length = 915
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 87/199 (43%), Gaps = 42/199 (21%)
Query: 32 RAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIR---GDML-------- 80
+A+ + D DLP V N ME G S P FQ+ IR DML
Sbjct: 658 KALLLGDAFSDLPKVENHQPNDVMEYGGS------PKTEFQRYIRLGRKDMLDWSFGEEA 711
Query: 81 -----VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV--VDLIPW---------- 123
L DH ++ + R ++IP + G+++R L KV +++ W
Sbjct: 712 GPDEGKLLDHQPLRLNNDDYERVKQIPVKKGANFRDLKGVKVGANNVVEWDPEVERVYLS 771
Query: 124 ----CLPNTAEKHNQWKGL--FGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRE 177
+P+ A + K L FGRL W+ PT VT P V HP Q R++T+RE
Sbjct: 772 SGKPLVPDYAMSFIKGKSLKPFGRLWWDQTVPTVVTRAEPHNQV--ILHPTQARVLTIRE 829
Query: 178 CARSQGFSDSYKFVGDIQH 196
AR QGF D Y+ G I+
Sbjct: 830 NARLQGFPDYYRLFGPIKE 848
>sp|Q8LPU5|CMT3_MAIZE DNA (cytosine-5)-methyltransferase 3 OS=Zea mays GN=DMT105 PE=2
SV=1
Length = 915
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 87/199 (43%), Gaps = 42/199 (21%)
Query: 32 RAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIR---GDML-------- 80
+A+ + D DLP V N ME G S P FQ+ IR DML
Sbjct: 658 KALLLGDAFSDLPKVENHQPNDVMEYGGS------PKTEFQRYIRLGRKDMLDWSFGEEA 711
Query: 81 -----VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV--VDLIPW---------- 123
L DH ++ + R ++IP + G+++R L KV +++ W
Sbjct: 712 GPDEGKLLDHQPLRLNNDDYERVKQIPVKKGANFRDLKGVKVGANNVVEWDPEVERVYLS 771
Query: 124 ----CLPNTAEKHNQWKGL--FGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRE 177
+P+ A + K L FGRL W+ PT VT P V HP Q R++T+RE
Sbjct: 772 SGKPLVPDYAMSFIKGKSLKPFGRLWWDETVPTVVTRAEPHNQV--ILHPTQARVLTIRE 829
Query: 178 CARSQGFSDSYKFVGDIQH 196
AR QGF D Y+ G I+
Sbjct: 830 NARLQGFPDYYRLFGPIKE 848
>sp|Q94F88|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana
GN=CMT3 PE=1 SV=2
Length = 839
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 40/191 (20%)
Query: 34 ITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQK--KIRGDML----------- 80
+ ++D I DLPAV N + Y +P FQK ++R D
Sbjct: 599 LLLKDVISDLPAVANSEKRDEIT------YDKDPTTPFQKFIRLRKDEASGSQSKSKSKK 652
Query: 81 -VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLP---------------SEKV-VDLIPW 123
VL DH ++ + R ++PK+ G+++R P E+V ++
Sbjct: 653 HVLYDHHPLNLNINDYERVCQVPKRKGANFRDFPGVIVGPGNVVKLEEGKERVKLESGKT 712
Query: 124 CLPNTAEKHNQWKGL--FGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARS 181
+P+ A + K FGRL W+ PT VT P V HP Q+R++++RE AR
Sbjct: 713 LVPDYALTYVDGKSCKPFGRLWWDEIVPTVVTRAEPHNQV--IIHPEQNRVLSIRENARL 770
Query: 182 QGFSDSYKFVG 192
QGF D YK G
Sbjct: 771 QGFPDDYKLFG 781
>sp|O49139|CMT1_ARATH Putative DNA (cytosine-5)-methyltransferase CMT1 OS=Arabidopsis
thaliana GN=CMT1 PE=5 SV=2
Length = 791
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 85/192 (44%), Gaps = 34/192 (17%)
Query: 33 AITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIRGDMLV----------L 82
A+T+ D I DLP V N + M+ ++P K+E + K R + L+ L
Sbjct: 555 ALTLADAISDLPPVTNYVANDVMDYNDAAP-KTEFENFISLK-RSETLLPAFGGDPTRRL 612
Query: 83 NDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKGL---- 138
DH + + +L R IPKQ G+++R +P V + P K K +
Sbjct: 613 FDHQPLVLGDDDLERVSYIPKQKGANYRDMPGVLVHNNKAEINPRFRAKLKSGKNVVPAY 672
Query: 139 ------------FGRL--DWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGF 184
FGRL D N + +PH ++ HP Q+R+++VRE AR QGF
Sbjct: 673 AISFIKGKSKKPFGRLWGDEIVNTVVTRAEPHNQCVI----HPMQNRVLSVRENARLQGF 728
Query: 185 SDSYKFVGDIQH 196
D YK G I+
Sbjct: 729 PDCYKLCGTIKE 740
>sp|P25265|MTD2_HERAU Modification methylase HgiDII OS=Herpetosiphon aurantiacus
GN=hgiDIIM PE=3 SV=1
Length = 354
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 85 HISKAMSELNLIRCQKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKGLFGRLDW 144
H + + ++NL R Q PG W P E LI C + E + ++GR++W
Sbjct: 210 HAASRLEDINLRRIQH--SVPGGTWADWPEE----LIAEC--HKKESGESYGSVYGRMEW 261
Query: 145 EGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQ 195
+ PT T + G G HP QDR I++RE A Q F SY+F + Q
Sbjct: 262 DKVAPTITTQCNGYGN-GRFGHPEQDRAISLREAALLQTFPRSYQFAPEGQ 311
>sp|P94147|MTA1_RUEGE Modification methylase AgeI OS=Ruegeria gelatinovora GN=ageIM PE=3
SV=1
Length = 429
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 75/201 (37%), Gaps = 50/201 (24%)
Query: 33 AITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIRGDMLVLNDHISKAMSE 92
A+TVRD I DLP T + + P K+E +Q+ +RG+ L H +K M
Sbjct: 208 ALTVRDAISDLPDEVLVPRDTQKPMEYPEPPKTE----YQRLMRGNSTELTHHSAKRMLG 263
Query: 93 LNLIRCQKIPKQPGSDWRVLPSEKVVD------LIPW------------CLPNTAEKHNQ 134
+ +R + PG D+ E++ D LI C EK
Sbjct: 264 IRRLRLAML--HPG-DYGTKIEERLADGGLNDELIDLMMGGAGMRDAAECRTQDREKEAA 320
Query: 135 WKGL-----------------------FGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDR 171
+ + + RL W+ P+ H HP DR
Sbjct: 321 LREVLKGGHTTPAKVMEFLDSQGFANKYRRLRWDA--PSHTVVAHMARDCSDFVHPGIDR 378
Query: 172 IITVRECARSQGFSDSYKFVG 192
++VRE AR Q F D+Y+F G
Sbjct: 379 FVSVREAARFQSFPDTYRFPG 399
>sp|O52702|MTA1_ACEPA Modification methylase ApaLI OS=Acetobacter pasteurianus GN=apaLIM
PE=3 SV=1
Length = 429
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 32/156 (20%)
Query: 62 PY-KSEPVLWFQKKIRGD--MLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSE--- 115
PY SEPV F ++R + V+ H+ +E R Q +PG + LP E
Sbjct: 221 PYASSEPVNAFDARMRAGNRVEVVTHHVRVEAAE----RMQVELLKPGQTMKDLPPELWH 276
Query: 116 ---------KVVDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPT-SVTDPHPMGMVGTCF 165
+V D P EK RL GN + ++T P +
Sbjct: 277 ESYRRRANRRVSDGTP------TEKRGGAPSGIKRL--HGNLQSLTITGPAAREFI---- 324
Query: 166 HPNQDRIITVRECARSQGFSDSYKFVGDIQHIIGRL 201
HP + R +T+RECAR Q F D Y++VG+ +I ++
Sbjct: 325 HPTEHRPLTIRECARIQTFPDKYRWVGNNASVIQQI 360
>sp|P25263|MTC1_HERAU Modification methylase HgiCI OS=Herpetosiphon aurantiacus GN=hgiCIM
PE=3 SV=2
Length = 420
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 4/38 (10%)
Query: 153 TDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKF 190
+D H +G+V H N+ R IT RECAR QGF DS++F
Sbjct: 350 SDAHKIGVV----HQNRIRRITPRECARLQGFPDSFQF 383
>sp|O33481|MTP1_PSYTA Modification methylase PspPI OS=Psychrobacter sp. (strain TA137)
GN=pspPIM PE=3 SV=1
Length = 416
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 137 GLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQH 196
G+ RL W+ T V P C HP++ R +T RE AR Q F D ++F G +
Sbjct: 325 GMARRLSWDEPSLTLVCTPA-QKQTERC-HPSESRPLTTREYARIQTFPDDWEFKGSVGQ 382
Query: 197 IIGRL 201
I ++
Sbjct: 383 IYKQI 387
>sp|Q8EL95|MT36_OCEIH Putative modification methylase OB3336 OS=Oceanobacillus iheyensis
(strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)
GN=OB3336 PE=3 SV=1
Length = 460
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 81/210 (38%), Gaps = 51/210 (24%)
Query: 15 RNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFSSP-----YKSEPVL 69
RNS Y + + +TV D IGDLP N V + P YKS P
Sbjct: 232 RNSKYYKQPNIPDETLSDWVTVGDAIGDLP---NLFPVYNQKYKNYKPMMMKEYKSPPQN 288
Query: 70 WFQK---------KIRGDML------------------VLNDHISKAMSEL-NLIRCQKI 101
FQK K+ G+M L+ H + AMS L +R I
Sbjct: 289 TFQKLMRINNKVDKVTGNMFRNTKRDFSIFDKMEEGDNYLDAH-NIAMSLLRKEMRKSGI 347
Query: 102 PKQPGSDWRVLPSEKVVDLIPWCLPNTAEKH-NQWKGLFGRLDWEGNFPTSVTDPHPMGM 160
K+ ++R+L ++P P + EK +W+ L + P+ H
Sbjct: 348 TKENEFEYRLLKDR----IVP---PYSTEKFVEKWRKL------SSDKPSHTLVAHLSTD 394
Query: 161 VGTCFHPNQDRIITVRECARSQGFSDSYKF 190
+ HP + R I+VRE AR Q F D + F
Sbjct: 395 TYSHLHPREPRGISVREAARLQSFPDDFLF 424
>sp|P50196|MTE8_ECOLX Modification methylase Eco47II OS=Escherichia coli GN=eco47IIM PE=3
SV=1
Length = 417
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 50/126 (39%), Gaps = 18/126 (14%)
Query: 79 MLVLNDHISKAM---SELNLIRCQKIPKQ---------PGSDWRVLPSEKVVDLIPWCLP 126
+L L D + K S++ QK PK+ PG WR LP D+ +
Sbjct: 263 ILTLKDALKKGELYDSDVPESEGQKYPKRKAEILSMVPPGGYWRDLPE----DIQKEYML 318
Query: 127 NTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSD 186
+ G+ RL W+ P+ P HP + R +TVRE AR Q F D
Sbjct: 319 KSFYLGGGKTGMARRLSWDE--PSLTLTCAPAQKQTERCHPEETRPLTVREYARIQTFPD 376
Query: 187 SYKFVG 192
+ F G
Sbjct: 377 EWVFEG 382
>sp|Q57983|MT51_METJA Probable modification methylase MJ0563 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0563 PE=3 SV=1
Length = 310
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 156 HPMGMVGTC------FHPNQDRIITVRECARSQGFSDSYKFVG--DIQH 196
HP + T HP +DR++TVRE AR + D + F G D+Q+
Sbjct: 239 HPKKLAPTVKGRSRFIHPYEDRLLTVREQARLMSYPDDFVFFGGRDVQY 287
>sp|P23737|MTS9_STAAU Modification methylase Sau96I OS=Staphylococcus aureus GN=sau96IM
PE=3 SV=1
Length = 430
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 105 PGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTC 164
PG W LP + D + + K +G+ R+ W+ T T P C
Sbjct: 316 PGGCWVDLPEQIAKDYMGKSWYSGGGK----RGMARRISWDEPCLTLTTSPS-QKQTERC 370
Query: 165 FHPNQDRIITVRECARSQGFSDSYKFVGDI 194
HP++ R ++RE AR Q F D ++F G +
Sbjct: 371 -HPDETRPFSIREYARIQSFPDEWEFSGGV 399
>sp|P19888|MTBA_BACAR Modification methylase BanI OS=Bacillus aneurinolyticus GN=banIM
PE=1 SV=1
Length = 428
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 153 TDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSY 188
+D H +G+V N R IT RECAR QGF D +
Sbjct: 350 SDAHKLGVV----QNNVPRRITPRECARLQGFPDDF 381
>sp|P34906|MTF1_FUSNU Modification methylase FnuDI OS=Fusobacterium nucleatum GN=fnuDIM
PE=3 SV=1
Length = 344
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 168 NQDRIITVRECARSQGFSDSYKF 190
N R +++RECAR QGF D++KF
Sbjct: 273 NLYRRLSIRECARIQGFPDTFKF 295
>sp|P50192|MTHA_HAEPH Modification methylase HphIA OS=Haemophilus parahaemolyticus
GN=hphIAM PE=3 SV=1
Length = 372
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 159 GMVGTCFHPNQDRIITVRECARSQGFSDSYKFVG 192
G + FH Q+R +TVRE A Q F D + F+G
Sbjct: 307 GDMRKVFHYEQNRALTVRELAALQSFPDDFVFLG 340
>sp|Q58600|MT52_METJA Probable modification methylase MJ1200 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1200 PE=3 SV=1
Length = 366
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 156 HPMGMVGTC------FHPNQDRIITVRECARSQGFSDSYKFVGDIQ 195
HP+ + T HP +DR++T RE AR + D + F G I+
Sbjct: 294 HPLKLAETVMGKRFFIHPYEDRLLTPREQARLMSYPDYHLFAGGIR 339
>sp|O34939|YDIO_BACSU Probable BsuMI modification methylase subunit YdiO OS=Bacillus
subtilis (strain 168) GN=ydiO PE=2 SV=1
Length = 427
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
Query: 125 LPNTAE------KHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVREC 178
LPN+ K + +K ++GR+ W+ PT G G H R IT E
Sbjct: 327 LPNSERPDCHRLKPHSYKSVYGRMYWDRPAPTITRGFGSTGQ-GRFVHSLLKRTITPHEA 385
Query: 179 ARSQGFSDSYKFVGDI-----QHIIG 199
AR Q F D + F GD+ Q +IG
Sbjct: 386 ARIQFFPDFFNF-GDLRRRQYQDVIG 410
>sp|P08455|MTP2_NEIGO Modification methylase NgoPII OS=Neisseria gonorrhoeae GN=ngoPIIM
PE=3 SV=2
Length = 330
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Query: 171 RIITVRECARSQGFSDSYKF----VGDIQHIIG 199
R +TVRE AR QGF D++KF V D +IG
Sbjct: 277 RRMTVREVARIQGFPDNFKFIYQNVNDAYKMIG 309
>sp|P29567|MTHT_METTF Modification methylase MthTI OS=Methanobacterium thermoformicicum
GN=mthTIM PE=3 SV=1
Length = 330
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 167 PNQDRIITVRECARSQGFSDS----YKFVGDIQHIIG 199
P R ++VRECAR QGF D YK V D ++G
Sbjct: 270 PKPYRRLSVRECARIQGFPDDFIFYYKNVADGYTMVG 306
>sp|P20589|MTH3_HAEAE Modification methylase HaeIII OS=Haemophilus aegyptius GN=haeIIIM
PE=1 SV=1
Length = 330
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 171 RIITVRECARSQGFSDSYKF 190
R +TVRECAR QGF D + F
Sbjct: 273 RRLTVRECARVQGFPDDFIF 292
>sp|P34905|MTB1_BREBE Modification methylase BbvI OS=Brevibacillus brevis GN=bbvIM PE=3
SV=1
Length = 374
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 165 FHPNQDRIITVRECARSQGFSDSYKFVGDIQHIIGRLEM 203
+H + R +T RE AR Q F D Y+F+G + + ++ M
Sbjct: 288 YHWEEPRALTNRERARLQTFPDDYEFIGKKEMVRKQIGM 326
>sp|P52311|MTX2_XANOR Modification methylase XorII OS=Xanthomonas oryzae pv. oryzae
(strain KACC10331 / KXO85) GN=xorIIM PE=3 SV=2
Length = 424
Score = 30.4 bits (67), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 151 SVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKF 190
+ T P P+ HP R+ITVRE AR + D ++F
Sbjct: 301 AFTSPRPI-------HPTVPRVITVREAARLHSYPDWFRF 333
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,672,966
Number of Sequences: 539616
Number of extensions: 3521546
Number of successful extensions: 6816
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6749
Number of HSP's gapped (non-prelim): 46
length of query: 216
length of database: 191,569,459
effective HSP length: 113
effective length of query: 103
effective length of database: 130,592,851
effective search space: 13451063653
effective search space used: 13451063653
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)