Query 046713
Match_columns 216
No_of_seqs 141 out of 1590
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 05:57:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swr_A DNA (cytosine-5)-methyl 100.0 2.3E-43 7.8E-48 349.9 14.6 201 8-215 742-992 (1002)
2 3av4_A DNA (cytosine-5)-methyl 100.0 6E-39 2E-43 324.8 14.1 186 24-215 1068-1302(1330)
3 3g7u_A Cytosine-specific methy 100.0 3.9E-38 1.4E-42 284.9 11.4 154 32-215 189-361 (376)
4 4ft4_B DNA (cytosine-5)-methyl 100.0 2E-34 7E-39 280.5 14.6 180 28-215 522-735 (784)
5 2c7p_A Modification methylase 99.9 2.5E-23 8.4E-28 184.8 5.6 78 138-215 238-316 (327)
6 3ubt_Y Modification methylase 99.8 1.3E-20 4.5E-25 165.4 4.2 74 139-215 244-318 (331)
7 1g55_A DNA cytosine methyltran 99.7 1.2E-18 4.3E-23 155.2 3.4 53 163-215 285-339 (343)
8 2qrv_A DNA (cytosine-5)-methyl 99.7 2.6E-17 9E-22 144.2 3.0 52 164-215 233-286 (295)
9 3qv2_A 5-cytosine DNA methyltr 99.5 2.1E-15 7.3E-20 133.8 4.8 52 164-215 265-319 (327)
10 4dkj_A Cytosine-specific methy 99.5 1.3E-15 4.5E-20 138.7 2.3 72 142-216 309-387 (403)
11 4h0n_A DNMT2; SAH binding, tra 99.5 2.7E-14 9.3E-19 126.9 4.3 51 165-215 277-329 (333)
12 3me5_A Cytosine-specific methy 99.4 1E-13 3.5E-18 128.8 5.2 47 169-215 400-450 (482)
No 1
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=100.00 E-value=2.3e-43 Score=349.89 Aligned_cols=201 Identities=46% Similarity=0.881 Sum_probs=161.6
Q ss_pred CceEEeCCCceeccccCCCCCCCCCCCCHHHHhcCCCCCCCCCCCcccccCcCCCCCCCchhHHHHhhhcCC--CccCCC
Q 046713 8 ELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIRGDM--LVLNDH 85 (216)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~vTv~dAI~DLP~~~~g~~~~~~~~~~~~~y~~~~~~~yqk~mR~~~--~~~~nH 85 (216)
.|++.+..+ .|.....+...+|.+++||+|||+|||.+..++...... |...+.++||++||.+. ..+.+|
T Consensus 742 ~l~~~~~~~-~~~~~~~~~~~~p~~~vTV~DAIsDLP~i~~g~~~~~~~------y~~~p~s~yq~~mR~~~~~~~l~~H 814 (1002)
T 3swr_A 742 QLSVVVDDK-KFVSNITRLSSGPFRTITVRDTMSDLPEVRNGASALEIS------YNGEPQSWFQRQLRGAQYQPILRDH 814 (1002)
T ss_dssp CCCEEETTE-EECCSCCCSSCCSBCCCCHHHHHTTSCCCCTTCCCSEEC------CCSCCCSHHHHHHHTTCSSCCEECC
T ss_pred ccccccccc-cccccccccccCCcCCcCHHHHhhhCCccccCccccccc------cCCCCccHHHHHhhcccccccccCc
Confidence 455555544 333333445567778999999999999999887654443 88888999999999753 578899
Q ss_pred ccCCCCHHHHHHHhcCCCCCCCCCCCCCchhhh-----------------------------------------------
Q 046713 86 ISKAMSELNLIRCQKIPKQPGSDWRVLPSEKVV----------------------------------------------- 118 (216)
Q Consensus 86 ~~~~~s~~~~~r~~~ip~~~G~~~~dlp~~~~~----------------------------------------------- 118 (216)
+++.+++..++|+++||..+|++|+|||++...
T Consensus 815 ~~~~~s~~~~~Ri~~IP~~~Gg~wrdlP~~~~~l~~~~~~~~l~~~~~~~~~g~~~~~~l~~~c~~~~~Gk~~~p~~~~~ 894 (1002)
T 3swr_A 815 ICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPAARQF 894 (1002)
T ss_dssp CCCCCCHHHHHHHHTSCCSTTCCGGGCCCCCEECTTSCEEBCCCCCBCCTTTCCCTTCCCCBCSGGGSSSCCCCGGGCCC
T ss_pred ccccCCHHHHHHHhcCCCCCCCChhhCchhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999998799999999974210
Q ss_pred -ccccCCCCCccccCCCCCCccccccCCCCCCceecCCCCCCCCceeeCCCCCccCcHHHHHHhcCCCCCceecCCHHhH
Q 046713 119 -DLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHI 197 (216)
Q Consensus 119 -~l~~~~~~~~~~~~~~~~~~y~Rl~~~~p~~Ti~~~~~~~~~~~~~~Hp~~~R~lTvrE~aRlQsFPD~~~f~g~~~~~ 197 (216)
.|++|+++.+.+.++.+.+.|+||+||+|++|++|.+.+++..|+++||.++|.||+|||||||||||+|.|.|+.+++
T Consensus 895 ~~l~p~~~~~~~~r~~~~~~~ygRL~wd~p~~~~it~~~~~~~~g~~~Hp~~~R~lt~rE~arlQ~fPd~~~f~g~~~~~ 974 (1002)
T 3swr_A 895 NTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDK 974 (1002)
T ss_dssp SBSSCTHHHHHGGGTGGGTTTTCBCCTTSCBSSCCSSCCTTCTTCCCBCSSSSSBCCHHHHHHHTTCCTTCCCCSSHHHH
T ss_pred ccccccccccccccccccCccceeeccCCCCCeeEecCCCCCCCCcccCcccccCCCHHHHHHhCCCCcceEEcCChHHH
Confidence 1222333222223456788999999999977777777666667899999999999999999999999999999999999
Q ss_pred HhhcccccchHHHHHhhc
Q 046713 198 IGRLEMLFHLLWRLHWGE 215 (216)
Q Consensus 198 ~~qIGNAVpp~la~aig~ 215 (216)
|+||||||||+||+|||+
T Consensus 975 ~~qiGNaVp~~~~~~i~~ 992 (1002)
T 3swr_A 975 HRQVGNAVPPPLAKAIGL 992 (1002)
T ss_dssp HHHHHHSCCHHHHHHHHH
T ss_pred heeeeccCCHHHHHHHHH
Confidence 999999999999999996
No 2
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=100.00 E-value=6e-39 Score=324.81 Aligned_cols=186 Identities=49% Similarity=0.942 Sum_probs=146.7
Q ss_pred CCCCCCCCCCCCHHHHhcCCCCCCCCCCCcccccCcCCCCCCCchhHHHHhhhcCC--CccCCCccCCCCHHHHHHHhcC
Q 046713 24 STANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIRGDM--LVLNDHISKAMSELNLIRCQKI 101 (216)
Q Consensus 24 ~~~~~~~~~~vTv~dAI~DLP~~~~g~~~~~~~~~~~~~y~~~~~~~yqk~mR~~~--~~~~nH~~~~~s~~~~~r~~~i 101 (216)
.+....+.+.+||+|||+|||.+..+....... |...+.++||+.||+.. ..+.+|+++.+++..++|+++|
T Consensus 1068 ~~~~~~p~~~vTV~DAI~DLP~i~~g~~~~~~~------y~~~p~s~~q~~iR~~~~~~~l~~H~~~~~s~~~~~Ri~~i 1141 (1330)
T 3av4_A 1068 TRLSSGPFRTITVRDTMSDLPEIQNGASNSEIP------YNGEPLSWFQRQLRGSHYQPILRDHICKDMSPLVAARMRHI 1141 (1330)
T ss_dssp CCSSCCSBCCCCHHHHHTTSCCCCTTCCCSEEE------CCSCCCSHHHHHHHCSSCCCEEECCCCCCCCHHHHHHHHHS
T ss_pred cccccCCcCCCcHHHHhhcCcccccCCcccccc------cCCCcccHHHHHhhccccccccccccccccCHHHHHHHHhc
Confidence 344445567899999999999988765432222 66667899999999765 4688999999999999999999
Q ss_pred CCCCCCCCCCCCchhh--------hcc---------------------------------------ccCCCCCccccCCC
Q 046713 102 PKQPGSDWRVLPSEKV--------VDL---------------------------------------IPWCLPNTAEKHNQ 134 (216)
Q Consensus 102 p~~~G~~~~dlp~~~~--------~~l---------------------------------------~~~~~~~~~~~~~~ 134 (216)
|..+|++|+|+|.... ..+ .+++++...+..+.
T Consensus 1142 p~~~G~~~~dlp~~~~~l~~g~~~~~l~y~~~~~k~g~~~~~~lrg~~~~~~Gk~~~p~~r~~~tL~p~~~~~~g~~~~~ 1221 (1330)
T 3av4_A 1142 PLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTGNRHNH 1221 (1330)
T ss_dssp CSSTTCCGGGCCCCCEECSSSCEEBCCCCCBCCTTTCCCTTSCCCBSSGGGGTSCCCSSSCCCSBSSCTHHHHHGGGTGG
T ss_pred cCCCCCCcccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9778999999986311 000 00000000111223
Q ss_pred CCCccccccCCCCCCceecCCCCCCCCceeeCCCCCccCcHHHHHHhcCCCCCceecCCHHhHHhhcccccchHHHHHhh
Q 046713 135 WKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHIIGRLEMLFHLLWRLHWG 214 (216)
Q Consensus 135 ~~~~y~Rl~~~~p~~Ti~~~~~~~~~~~~~~Hp~~~R~lTvrE~aRlQsFPD~~~f~g~~~~~~~qIGNAVpp~la~aig 214 (216)
+.+.|+||+|++|++|++|...+++..|+++||.++|.||||||||||||||+|+|.|+.+++|+||||||||+||+|||
T Consensus 1222 ~~~~ygRL~~d~p~sttiT~~~~~~k~g~~iHP~q~R~LTVREaARLQsFPDdF~F~Gs~t~~yrQIGNAVPPlLAkAIA 1301 (1330)
T 3av4_A 1222 WAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPPPLAKAIG 1301 (1330)
T ss_dssp GTTTTCBCCTTSCBSSCCSSCCTTSSSCCCBCSSSSSBCCHHHHHHHTTCCTTCCCCSSHHHHHHHHHHSCCHHHHHHHH
T ss_pred ccccceecccCCCCCceEeCCcccCCCCcccCccccccCCHHHHHHhcCCCCCeEECCCHhhhhEEeEeCcCHHHHHHHH
Confidence 46789999999998888887766666788999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 046713 215 E 215 (216)
Q Consensus 215 ~ 215 (216)
+
T Consensus 1302 ~ 1302 (1330)
T 3av4_A 1302 L 1302 (1330)
T ss_dssp H
T ss_pred H
Confidence 6
No 3
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=100.00 E-value=3.9e-38 Score=284.90 Aligned_cols=154 Identities=21% Similarity=0.210 Sum_probs=119.0
Q ss_pred CCCCHHHHhcCCCCCCC-CCCCcccccCcCCCCCCCchhHHHHhhhcC---------------CCccCCCccCCCCHHHH
Q 046713 32 RAITVRDTIGDLPAVGN-GASVTTMEVGFSSPYKSEPVLWFQKKIRGD---------------MLVLNDHISKAMSELNL 95 (216)
Q Consensus 32 ~~vTv~dAI~DLP~~~~-g~~~~~~~~~~~~~y~~~~~~~yqk~mR~~---------------~~~~~nH~~~~~s~~~~ 95 (216)
+.+||+|||+|||.+.. ++...... + ..|...+.+.|++.||.. ...+.+|.++.|++..+
T Consensus 189 ~~~tv~dai~dlp~~~~~~~~~~~~~--~-~~~~~~~~~~y~~~~r~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 265 (376)
T 3g7u_A 189 DPVTVKDALYGLPDIIDANWQSDSES--W-RTIKKDRKGGFYEKLWGQIPRNVGDTESIAKLKNNIISGCTGTLHSKIVQ 265 (376)
T ss_dssp CCCCHHHHTTTCCSSCEEESSCSSCC--C-EECCCCCCSHHHHHHHCCCCTTCSCHHHHHHHHTTEESCCEEECCCHHHH
T ss_pred CCCcHHHHHhcCCccccccccccccc--c-cccCccCccHHHHHhhcCcccccccccccccccccccccccccccCHHHH
Confidence 57899999999998765 22111110 0 012223568899999974 34678999999999999
Q ss_pred HHHhcCCCCCCCCCCCCCchhhhccccCCCCCccccCCCCCCccccccCCCCCCceecCCCCCC---CCceeeCCCCCcc
Q 046713 96 IRCQKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMG---MVGTCFHPNQDRI 172 (216)
Q Consensus 96 ~r~~~ip~~~G~~~~dlp~~~~~~l~~~~~~~~~~~~~~~~~~y~Rl~~~~p~~Ti~~~~~~~~---~~~~~~Hp~~~R~ 172 (216)
+|++.|+ +|++ .+.+.|+||+||+||+||+|.+.... ..++++||.++|.
T Consensus 266 ~r~~~~~--~G~~-------------------------~~~~~~~Rl~~d~ps~Ti~~~~~~~~g~~~~~r~~HP~~~R~ 318 (376)
T 3g7u_A 266 ERYASLS--FGET-------------------------DKISRSTRLDPNGFCPTLRAGTARDKGSFQAVRPIHPYHPRV 318 (376)
T ss_dssp HHHHTCC--TTCB-------------------------CTTTCCBBCCTTSCBCCC-------------CCCBCSSSSSB
T ss_pred HHHHhCC--CCCC-------------------------ccCCceeecCcccCCCceecCcCCCCCcccCccccCCccCcC
Confidence 9999999 7753 12367999999999999999765321 1245699999999
Q ss_pred CcHHHHHHhcCCCCCceecCCHHhHHhhcccccchHHHHHhhc
Q 046713 173 ITVRECARSQGFSDSYKFVGDIQHIIGRLEMLFHLLWRLHWGE 215 (216)
Q Consensus 173 lTvrE~aRlQsFPD~~~f~g~~~~~~~qIGNAVpp~la~aig~ 215 (216)
||||||||||||||+|+|.|+.+++|+||||||||+||++||+
T Consensus 319 lTvRE~ARlQsFPD~f~f~g~~~~~~~qIGNAVPp~la~aia~ 361 (376)
T 3g7u_A 319 ITPREAARLQGFPDWFRFHVTKWHSFRQIGNSVSPIVAEYILK 361 (376)
T ss_dssp CCHHHHHHHHTCCTTCCCCSSHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CCHHHHHHhCCCCcceEECCChHHhheeeecCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999996
No 4
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=100.00 E-value=2e-34 Score=280.50 Aligned_cols=180 Identities=31% Similarity=0.415 Sum_probs=143.7
Q ss_pred CCCCCCCCHHHHhcCCCCCCCCCCCcccccCcCCCCCCCchhHHHHhhhcC----------------CCccCCCccCCCC
Q 046713 28 GAPFRAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIRGD----------------MLVLNDHISKAMS 91 (216)
Q Consensus 28 ~~~~~~vTv~dAI~DLP~~~~g~~~~~~~~~~~~~y~~~~~~~yqk~mR~~----------------~~~~~nH~~~~~s 91 (216)
....+.+|++|||+|||.+..+....... |...+.+.|++.+|.. ...+.+|.+..++
T Consensus 522 ~~~~~~~t~~dai~dlp~~~~~~~~~~~~------~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 595 (784)
T 4ft4_B 522 PSLKKALLLGDAISDLPKVQNHQPNDVME------YGGSPKTEFQRYIRLSRKDMLDWSFGEGAGPDEGKLLDHQPLRLN 595 (784)
T ss_dssp CCCBCCCCHHHHHTTSCCCCSCCCCSEEC------CSSCCCSHHHHHHTCCTTTTTCCTTCSSCCSSTTCEECCCCCCCC
T ss_pred ccccccccHHHHhhcccccccCCCccccc------cCCCCccHHHHHHhhcccccccccccccccccccccccccccccC
Confidence 33446799999999999988876554443 7778889999999852 3467899999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCchhhhc-----cccCC-----------CCCc--cccCCCCCCccccccCCCCCCceec
Q 046713 92 ELNLIRCQKIPKQPGSDWRVLPSEKVVD-----LIPWC-----------LPNT--AEKHNQWKGLFGRLDWEGNFPTSVT 153 (216)
Q Consensus 92 ~~~~~r~~~ip~~~G~~~~dlp~~~~~~-----l~~~~-----------~~~~--~~~~~~~~~~y~Rl~~~~p~~Ti~~ 153 (216)
+..++++..|+...|++|++++...... ..+.. .+.. ....+.+.+.|+||.|++|++||+|
T Consensus 596 ~~~~~r~~~i~~~~g~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~rl~~d~ps~TItt 675 (784)
T 4ft4_B 596 NDDYERVQQIPVKKGANFRDLKGVRVGANNIVEWDPEIERVKLSSGKPLVPDYAMSFIKGKSLKPFGRLWWDETVPTVVT 675 (784)
T ss_dssp HHHHHHHHHSCSSTTCCGGGSTTEEECGGGCEEECTTSCCCBCTTSSBSSCHHHHHGGGGTCCCTTEECCTTCCCSCCCS
T ss_pred HHHHHHHHhcccccCCcccccccccccccccccccchhhhcccccCcccccccccccccCCcCccceeccCCCcccceec
Confidence 9999999999988899999987643200 00000 0000 0113345678999999999999999
Q ss_pred CCCCCCCCceeeCCCCCccCcHHHHHHhcCCCCCceecCCHHhHHhhcccccchHHHHHhhc
Q 046713 154 DPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHIIGRLEMLFHLLWRLHWGE 215 (216)
Q Consensus 154 ~~~~~~~~~~~~Hp~~~R~lTvrE~aRlQsFPD~~~f~g~~~~~~~qIGNAVpp~la~aig~ 215 (216)
+.... .+.++||.++|+||||||||||||||+|.|.|+.+++|+||||||||+||+|||+
T Consensus 676 ~~~~~--~~~~iHp~~~R~LTpRE~ARLQgFPD~y~f~Gs~~~~ykQIGNAVpp~lA~aIg~ 735 (784)
T 4ft4_B 676 RAEPH--NQVIIHPTQARVLTIRENARLQGFPDYYRLFGPIKEKYIQVGNAVAVPVARALGY 735 (784)
T ss_dssp CCCSS--SSEEECSSSSSBCCHHHHHHHTTCCTTCCCCSCHHHHHHHHHHSCCHHHHHHHHH
T ss_pred cccCC--CCeecCCCCCcCCcHHHHHHHCCCCCCCEeCCCHHHHHhhccCCCCHHHHHHHHH
Confidence 87653 3578999999999999999999999999999999999999999999999999996
No 5
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=99.87 E-value=2.5e-23 Score=184.80 Aligned_cols=78 Identities=18% Similarity=0.092 Sum_probs=69.0
Q ss_pred ccccccCCCCCCceecCCCC-CCCCceeeCCCCCccCcHHHHHHhcCCCCCceecCCHHhHHhhcccccchHHHHHhhc
Q 046713 138 LFGRLDWEGNFPTSVTDPHP-MGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHIIGRLEMLFHLLWRLHWGE 215 (216)
Q Consensus 138 ~y~Rl~~~~p~~Ti~~~~~~-~~~~~~~~Hp~~~R~lTvrE~aRlQsFPD~~~f~g~~~~~~~qIGNAVpp~la~aig~ 215 (216)
.|+|+.|++|++||++..+. .+..+..+||.+.|.||+|||||||||||+|.|.|+.+++|+||||||||+|+++||+
T Consensus 238 ~~~~~~~~~~~~Ti~~~~~~~~~~~~~~~~~~~~R~LT~rE~aRLQgFPd~f~f~gs~~~~ykqIGNAVp~~l~~~Ia~ 316 (327)
T 2c7p_A 238 GERIYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAY 316 (327)
T ss_dssp TCEEEETTSCBCCCCSSCCSTTTTTCEEEETTEEEECCHHHHHHHTTCCTTSCCCSSHHHHHHHHHHCCCHHHHHHHHH
T ss_pred ccccccCCCCcCceecCCCCccCCCCccCCCCCCcCCCHHHHHHHCCCCcCcEeCCCHHHHHhHccCCCCHHHHHHHHH
Confidence 47888899999999987321 1223567899999999999999999999999999999999999999999999999996
No 6
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=99.80 E-value=1.3e-20 Score=165.43 Aligned_cols=74 Identities=20% Similarity=0.161 Sum_probs=57.4
Q ss_pred cccccCCCCCCceecCCCCCCCCceeeCCCCCccCcHHHHHHhcCCCCCceec-CCHHhHHhhcccccchHHHHHhhc
Q 046713 139 FGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKFV-GDIQHIIGRLEMLFHLLWRLHWGE 215 (216)
Q Consensus 139 y~Rl~~~~p~~Ti~~~~~~~~~~~~~~Hp~~~R~lTvrE~aRlQsFPD~~~f~-g~~~~~~~qIGNAVpp~la~aig~ 215 (216)
+.+++++.|..|..+.... .....||.+.|.||+|||||||||||+|.|. ++.+++|+||||||||+||++||+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~R~LT~rE~aRLQgFPd~f~f~~~s~~~~ykqiGNAVpp~la~~I~~ 318 (331)
T 3ubt_Y 244 QCQLHPQAPVMLKVSKNLN---KFVEGKEHLYRRLTVRECARVQGFPDDFIFHYESLNDGYKMIGNAVPVNLAYEIAK 318 (331)
T ss_dssp TCCBCTTSCCCEEEETTEE---ECCTTCGGGCCBCBHHHHHHHHTCCTTCCCCCSBHHHHHHHHHTSCCHHHHHHHHH
T ss_pred ccccccccceeeeecCCCC---cccCCCCCcCcCCCHHHHHHhCCCCCCCEeCCCCHHHHhhhCccCccHHHHHHHHH
Confidence 4455666655555443211 1122366778999999999999999999995 789999999999999999999996
No 7
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=99.72 E-value=1.2e-18 Score=155.17 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=50.1
Q ss_pred eeeCCCCCccCcHHHHHHhcCCCCCceecC--CHHhHHhhcccccchHHHHHhhc
Q 046713 163 TCFHPNQDRIITVRECARSQGFSDSYKFVG--DIQHIIGRLEMLFHLLWRLHWGE 215 (216)
Q Consensus 163 ~~~Hp~~~R~lTvrE~aRlQsFPD~~~f~g--~~~~~~~qIGNAVpp~la~aig~ 215 (216)
..+||.+.|.||+|||||||||||+|.|.| +.+++|+|||||||++|+++||+
T Consensus 285 ~~~h~~~~R~lT~RE~aRLqgFPd~f~f~g~~s~~~~ykqiGNAVpv~v~~~I~~ 339 (343)
T 1g55_A 285 TKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIK 339 (343)
T ss_dssp HHHHTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHH
T ss_pred eccCCCCccccCHHHHHHHcCCChhhccCCCCCHHHHHHHhcCcccHHHHHHHHH
Confidence 357999999999999999999999999997 78999999999999999999986
No 8
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.65 E-value=2.6e-17 Score=144.21 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=48.7
Q ss_pred eeCCCCCccCcHHHHHHhcCCCCCceecCCH--HhHHhhcccccchHHHHHhhc
Q 046713 164 CFHPNQDRIITVRECARSQGFSDSYKFVGDI--QHIIGRLEMLFHLLWRLHWGE 215 (216)
Q Consensus 164 ~~Hp~~~R~lTvrE~aRlQsFPD~~~f~g~~--~~~~~qIGNAVpp~la~aig~ 215 (216)
.+|+.+.|.||+|||||||||||+|.|.|+. +++|+|||||||++++++||+
T Consensus 233 ~~~~~~~R~lt~rE~arlqgFPd~~~~~~~~s~~~~~~qiGNaVpv~~~~~i~~ 286 (295)
T 2qrv_A 233 VFMNEKEDILWCTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVPVIRHLFA 286 (295)
T ss_dssp EEETTEEECCCHHHHHHHHTCCTTTTCCTTCCHHHHHHHHHTSCCHHHHHHHHG
T ss_pred cccCCCcCCCCHHHHHHHcCCCHHHeeCCCcCHHHHhccEecCcCHHHHHHHHH
Confidence 3688889999999999999999999999865 999999999999999999997
No 9
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=99.55 E-value=2.1e-15 Score=133.78 Aligned_cols=52 Identities=15% Similarity=0.033 Sum_probs=48.9
Q ss_pred eeCCCCCccCcHHHHHHhcCCCCCceec---CCHHhHHhhcccccchHHHHHhhc
Q 046713 164 CFHPNQDRIITVRECARSQGFSDSYKFV---GDIQHIIGRLEMLFHLLWRLHWGE 215 (216)
Q Consensus 164 ~~Hp~~~R~lTvrE~aRlQsFPD~~~f~---g~~~~~~~qIGNAVpp~la~aig~ 215 (216)
.+|+...|.||+||+||||||||+|.|. .+.+++|+|+|||||++++++||+
T Consensus 265 ~~~~~~~R~lt~~E~~rlqgfP~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~ 319 (327)
T 3qv2_A 265 DLLNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLME 319 (327)
T ss_dssp GGTTSCCBCCCHHHHHHHTTCCTTCCSCCTTCCHHHHHHHHHTSCCHHHHHHHHH
T ss_pred eecCCccccCcHHHHHHhCcCCHHHcCCcCCCCHHHHHHHccCccCHHHHHHHHH
Confidence 4588899999999999999999999998 688999999999999999999986
No 10
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=99.53 E-value=1.3e-15 Score=138.65 Aligned_cols=72 Identities=15% Similarity=0.004 Sum_probs=58.7
Q ss_pred ccCCCCCCceecCCCCCCCCc-eeeCCCCCccCcHHHHHHhcCCCC-Cceec-----CCHHhHHhhcccccchHHHHHhh
Q 046713 142 LDWEGNFPTSVTDPHPMGMVG-TCFHPNQDRIITVRECARSQGFSD-SYKFV-----GDIQHIIGRLEMLFHLLWRLHWG 214 (216)
Q Consensus 142 l~~~~p~~Ti~~~~~~~~~~~-~~~Hp~~~R~lTvrE~aRlQsFPD-~~~f~-----g~~~~~~~qIGNAVpp~la~aig 214 (216)
..++..++||+++... .+ ...+....|.||+|||+||||||| +|.|. .+.+++|+|+||||++++++|||
T Consensus 309 ~~~~~~~~Tlt~~~~~---~~~~~~~~~~~R~ltprE~~rlqGFpd~~~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~ 385 (403)
T 4dkj_A 309 YNINGIGPTLTASGAN---SRIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAIF 385 (403)
T ss_dssp EETTSBBCCCCSSSGG---GSCEEEETTEEEECCHHHHHHHTTCCHHHHHHHHHTSCSCHHHHHHHHHTSCCHHHHHHHH
T ss_pred ecCCCcccceecCCCC---ceeEEccCCCcccCCHHHHHHHcCCCHHHhhhhhccCCCCHHHHHhhcCCccCHHHHHHHH
Confidence 3567789999985321 12 123556689999999999999999 79996 69999999999999999999999
Q ss_pred cC
Q 046713 215 EN 216 (216)
Q Consensus 215 ~~ 216 (216)
+.
T Consensus 386 ~~ 387 (403)
T 4dkj_A 386 NT 387 (403)
T ss_dssp HT
T ss_pred HH
Confidence 73
No 11
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=99.45 E-value=2.7e-14 Score=126.91 Aligned_cols=51 Identities=16% Similarity=0.070 Sum_probs=47.1
Q ss_pred eCCCCCccCcHHHHHHhcCCCCCceec--CCHHhHHhhcccccchHHHHHhhc
Q 046713 165 FHPNQDRIITVRECARSQGFSDSYKFV--GDIQHIIGRLEMLFHLLWRLHWGE 215 (216)
Q Consensus 165 ~Hp~~~R~lTvrE~aRlQsFPD~~~f~--g~~~~~~~qIGNAVpp~la~aig~ 215 (216)
+|+...|.||+|||||||||||+|.|. .+.+++|+|+||||+++++++||+
T Consensus 277 ~~~~~~R~lt~~E~~rl~gfp~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~ 329 (333)
T 4h0n_A 277 FKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVKVISELLK 329 (333)
T ss_dssp HHTTTCBCCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHTSCCHHHHHHHHH
T ss_pred ccCCCcCCCCHHHHHHhCCCCccccCCCCCCHHHHHHHhCCccCHHHHHHHHH
Confidence 377889999999999999999999998 467789999999999999999986
No 12
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=99.41 E-value=1e-13 Score=128.76 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=44.6
Q ss_pred CCccCcHHHHHHhcCCC----CCceecCCHHhHHhhcccccchHHHHHhhc
Q 046713 169 QDRIITVRECARSQGFS----DSYKFVGDIQHIIGRLEMLFHLLWRLHWGE 215 (216)
Q Consensus 169 ~~R~lTvrE~aRlQsFP----D~~~f~g~~~~~~~qIGNAVpp~la~aig~ 215 (216)
..|.||+|||||||||| |+|.|.++.+++|+|||||||++++++||+
T Consensus 400 ~~R~lTprE~~rlqgFp~~~~~~~~~~~s~~~~y~q~GNsV~v~v~~~i~~ 450 (482)
T 3me5_A 400 RPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAK 450 (482)
T ss_dssp CCEECCHHHHHHHHTSSCTTCCCSCCCSCHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CcccCCHHHHHHHcCCCCccccceeccCCHHHHHHHcCCccChHHHHHHHH
Confidence 47999999999999999 688999999999999999999999999986
Done!