BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046715
(501 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 139/277 (50%), Gaps = 22/277 (7%)
Query: 158 YQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGM 217
YQ F + S+Q ++Y V P++ L+G++ + A GP+G+GKTHT+ G P +PG+
Sbjct: 67 YQ-FDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGV 125
Query: 218 VPIALKRIFKGTTKIRSSES---TRSFYLSIFEIYSERGKGEKLLDLL-PDGVDLCMQQS 273
+P AL + + T+ +E S +S EIY EK+LDLL P DL +++
Sbjct: 126 IPRALMDLLQ-LTREEGAEGRPWALSVTMSYLEIYQ-----EKVLDLLDPASGDLVIRED 179
Query: 274 T-----IKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELS 328
I GL + IS A E A R T N +SSRS ++ ++ E
Sbjct: 180 CRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRE-- 237
Query: 329 RGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGL---CLRKPLQK- 384
R + L +IDLAG+E +RTGN+G RL ES IN + V G L + L +
Sbjct: 238 RLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRV 297
Query: 385 HFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDT 421
+++S LTR L+D L G LI + YLDT
Sbjct: 298 PYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDT 334
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 154/310 (49%), Gaps = 23/310 (7%)
Query: 139 VTLSPPLALQTSKRIKSEVYQGFSY--VFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAA 196
V + PP +++ + K +V + F++ V+ S +++ PL++ L+G + + A
Sbjct: 37 VIVDPPEQEKSATQAK-KVPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFA 95
Query: 197 LGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSSESTRSFYL--SIFEIYSERGK 254
G +G+GKT T+ G EPG +P + K +F I SS S ++F + S E+Y+
Sbjct: 96 YGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDA---INSSSSNQNFLVIGSYLELYN---- 148
Query: 255 GEKLLDLLPDGVDLCMQQST-----IKGLQEIIISDAAQAESLIARAMLKRATAMTNSNN 309
E++ DL+ + L +++ + GL ++ AA+ +L+ + R A T N+
Sbjct: 149 -EEIRDLIKNNTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMND 207
Query: 310 QSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINN 369
SSRS I +R +E+ V L ++DLAG+ER+ +TG G L+E IN
Sbjct: 208 TSSRSHSIFMVRIECSEVIENKEV-IRVGKLNLVDLAGSERQSKTGATGETLVEGAKINL 266
Query: 370 TSMVFGLCLRKPLQKH----FQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLL 425
+ GL + K ++ +++S LTR L+D L G + + + +Y +T L
Sbjct: 267 SLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTL 326
Query: 426 RQASPYMKIK 435
R A +IK
Sbjct: 327 RYADRAKQIK 336
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 135/281 (48%), Gaps = 18/281 (6%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPI 220
F VF S+Q EV+E P++ FL G + + A G +G+GKTHT+ G EPG++ +
Sbjct: 76 FDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYL 135
Query: 221 ALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLCMQQSTIKG--L 278
+ ++K +I+ E S +S E+Y+ E++ DLL + L +++ T KG +
Sbjct: 136 TMLHLYKCMDEIK-EEKICSTAVSYLEVYN-----EQIRDLLVNSGPLAVREDTQKGVVV 189
Query: 279 QEIIISDAAQAES---LIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHA 335
+ + +E L+ R T+ N SSRS + + + + +
Sbjct: 190 HGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNV 249
Query: 336 NDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCL-------RKPLQKHFQN 388
A +++IDLAG+ER +G +G R +E IN + + G + RK ++N
Sbjct: 250 RIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRN 309
Query: 389 SLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQAS 429
S LTR L+D L G + +I V Y DT L+ A+
Sbjct: 310 SKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYAN 350
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 131/266 (49%), Gaps = 28/266 (10%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGC----PREPG 216
F VF Q ++++ + P V+D L G +G + A G +G+GK++T+ G P G
Sbjct: 51 FDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRG 110
Query: 217 MVPIALKRIFKGTTKIRSSESTRSFY--LSIFEIYSERGKGEKLLDLL-PDGVDLCMQQS 273
++P +++IF T I SS + + +S EIY ER + DLL P +L + +
Sbjct: 111 VIPRIVEQIF---TSILSSAANIEYTVRVSYMEIYMER-----IRDLLAPQNDNLPVHEE 162
Query: 274 T-----IKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELS 328
+KGL EI +S + ++ R RA A TN N +SSRS I + +
Sbjct: 163 KNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVE 222
Query: 329 RGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR-----KPLQ 383
G A L ++DLAG+E+ +TG G L E+ IN + G+ + K
Sbjct: 223 TG---SAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSH 279
Query: 384 KHFQNSLLTRYLRDYLEGKKRMTLIL 409
+++S LTR L++ L G R TLI+
Sbjct: 280 VPYRDSKLTRILQESLGGNSRTTLII 305
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 139/291 (47%), Gaps = 24/291 (8%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHT---IFGCPREPGM 217
F V+ ++ Q E+Y++ PLV+ L+G +G + A G +G+GKT+T I G P + G+
Sbjct: 72 FDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGV 131
Query: 218 VPIALKRIFKGTTKIRSSES-TRSFYLSIFEIYSERGKGEKLLDLLPDG----VDLCMQQ 272
+P + IF ++ ++ + R+ YL I++ E++ DLL ++L +
Sbjct: 132 IPNSFDHIFTHISRSQNQQYLVRASYLEIYQ--------EEIRDLLSKDQTKRLELKERP 183
Query: 273 ST---IKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSR 329
T +K L + + E ++ R+ TN N SSRS I + +E+
Sbjct: 184 DTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGL 243
Query: 330 GDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFG-----LCLRKPLQK 384
H L ++DLAG+ER+ +TG QG RL E+ IN + G L K
Sbjct: 244 DGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHI 303
Query: 385 HFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIK 435
+++S LTR L+D L G + ++ V + +T LR A+ IK
Sbjct: 304 PYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIK 354
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 156/321 (48%), Gaps = 43/321 (13%)
Query: 139 VTLSPPLALQTSKRIKSEVYQGFSY--VFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAA 196
V + P + T + S++ + F++ F +S Q +VY +V+PL+E+ L G + + A
Sbjct: 47 VDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFA 106
Query: 197 LGPSGSGKTHTIFGCP-----------REPGMVPIALKRIFKGTTKIRSSESTRSFYLSI 245
G +G+GKTHT+ G + G++P AL +F ++R E + +S
Sbjct: 107 YGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFD---ELRMMEVEYTMRISY 163
Query: 246 FEIYSERGKGEKLLDLLP--DGVDL-CMQQST------IKGLQEIIISDAAQAESLIARA 296
E+Y+ E+L DLL D + ST I+GL+EI + L+ +
Sbjct: 164 LELYN-----EELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKG 218
Query: 297 MLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAV----LTIIDLAGAEREK 352
+R TA T N QSSRS + ++ E +G+ D + L ++DLAG+E
Sbjct: 219 KERRKTATTLMNAQSSRSHTVFSIVVHIRE----NGIEGEDMLKIGKLNLVDLAGSENVS 274
Query: 353 RTGNQ-GARLLESNFINNTSMVFGLCLRKPLQKH----FQNSLLTRYLRDYLEGKKRMTL 407
+ GN+ G R+ E+ IN + + G + + + ++ S LTR L++ L G+ + ++
Sbjct: 275 KAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGRTKTSI 334
Query: 408 ILTVKSGEEDYLDTSYLLRQA 428
I T+ G +D +T L A
Sbjct: 335 IATISPGHKDIEETLSTLEYA 355
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 150/328 (45%), Gaps = 35/328 (10%)
Query: 130 CITVNDHNSVTLSPPLALQTSK---RIKSEVYQGFSYVFSADSSQGE-------VYEKMV 179
C+ D N V L+P + SK R + +V+ +S D S E V++ +
Sbjct: 23 CVVDVDANKVILNP-VNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLG 81
Query: 180 NPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSSESTR 239
++++ G + + A G +GSGK++T+ G +PG++P +F+ T K + E +
Sbjct: 82 ENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSF 141
Query: 240 SFYLSIFEIYSERGKGEKLLDLL-PDGVDLCMQQST-------IKGLQEIIISDAAQAES 291
+S EIY+ EK+ DLL P G ++ + GL ++ ++ ES
Sbjct: 142 KVEVSYMEIYN-----EKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIES 196
Query: 292 LIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHAND-AVLTIIDLAGAER 350
L++ R A TN N +SSRS + + G L+++DLAG+ER
Sbjct: 197 LMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSER 256
Query: 351 EKRTGNQGARLLESNFINNTSMVFGLCLRKPLQKH----------FQNSLLTRYLRDYLE 400
+TG G RL E + IN + GL + + +++S+LT L+D L
Sbjct: 257 ATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLG 316
Query: 401 GKKRMTLILTVKSGEEDYLDTSYLLRQA 428
G + ++ TV ++Y +T LR A
Sbjct: 317 GNSKTAMVATVSPAADNYDETLSTLRYA 344
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 133/277 (48%), Gaps = 34/277 (12%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG--------CP 212
F VF A + Q +VY +V P++++ + G + + A G +G+GKT T+ G C
Sbjct: 68 FDMVFGASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCW 127
Query: 213 RE---PGMVPIALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLC 269
E G++P L +IF+ K+ + + S +S+ EIY+ E+L DLL D+
Sbjct: 128 EEDPLAGIIPRTLHQIFE---KLTDNGTEFSVKVSLLEIYN-----EELFDLLNPSSDVS 179
Query: 270 -----------MQQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCII 318
+ IKGL+EI + + + ++ + KR TA T N SSRS +
Sbjct: 180 ERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 239
Query: 319 NLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCL 378
++ E + L ++DLAG+E R+G R E+ IN + + G +
Sbjct: 240 SVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVI 299
Query: 379 RKPLQKH----FQNSLLTRYLRDYLEGKKRMTLILTV 411
+++ ++ S LTR L+D L G+ R ++I T+
Sbjct: 300 TALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 133/277 (48%), Gaps = 34/277 (12%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG--CPRE---- 214
F VF A + Q +VY +V P++++ + G + + A G +G+GKT T+ G P E
Sbjct: 68 FDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTW 127
Query: 215 -----PGMVPIALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLC 269
G++P L +IF+ K+ + + S +S+ EIY+ E+L DLL D+
Sbjct: 128 EEDPLAGIIPRTLHQIFE---KLTDNGTEFSVKVSLLEIYN-----EELFDLLNPSSDVS 179
Query: 270 -----------MQQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCII 318
+ IKGL+EI + + + ++ + KR TA T N SSRS +
Sbjct: 180 ERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 239
Query: 319 NLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCL 378
++ E + L ++DLAG+E R+G R E+ IN + + G +
Sbjct: 240 SVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVI 299
Query: 379 RKPLQKH----FQNSLLTRYLRDYLEGKKRMTLILTV 411
+++ ++ S LTR L+D L G+ R ++I T+
Sbjct: 300 TALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 133/277 (48%), Gaps = 34/277 (12%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG--CPRE---- 214
F VF A + Q +VY +V P++++ + G + + A G +G+GKT T+ G P E
Sbjct: 70 FDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTW 129
Query: 215 -----PGMVPIALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLC 269
G++P L +IF+ K+ + + S +S+ EIY+ E+L DLL D+
Sbjct: 130 EEDPLAGIIPRTLHQIFE---KLTDNGTEFSVKVSLLEIYN-----EELFDLLNPSSDVS 181
Query: 270 -----------MQQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCII 318
+ IKGL+EI + + + ++ + KR TA T N SSRS +
Sbjct: 182 ERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 241
Query: 319 NLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCL 378
++ E + L ++DLAG+E R+G R E+ IN + + G +
Sbjct: 242 SVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVI 301
Query: 379 RKPLQKH----FQNSLLTRYLRDYLEGKKRMTLILTV 411
+++ ++ S LTR L+D L G+ R ++I T+
Sbjct: 302 TALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATI 338
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 133/277 (48%), Gaps = 34/277 (12%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG--CPREP--- 215
F VF A + Q +VY +V P++++ + G + + A G +G+GKT T+ G P E
Sbjct: 68 FDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTW 127
Query: 216 ------GMVPIALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLC 269
G++P L +IF+ K+ + + S +S+ EIY+ E+L DLL D+
Sbjct: 128 EEDPLDGIIPRTLHQIFE---KLTDNGTEFSVKVSLLEIYN-----EELFDLLNPSSDVS 179
Query: 270 -----------MQQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCII 318
+ IKGL+EI + + + ++ + KR TA T N SSRS +
Sbjct: 180 ERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 239
Query: 319 NLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCL 378
++ E + L ++DLAG+E R+G R E+ IN + + G +
Sbjct: 240 SVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVI 299
Query: 379 RKPLQKH----FQNSLLTRYLRDYLEGKKRMTLILTV 411
+++ ++ S LTR L+D L G+ R ++I T+
Sbjct: 300 TALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 133/277 (48%), Gaps = 34/277 (12%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG--CPRE---- 214
F VF A + Q +VY +V P++++ + G + + A G +G+GKT T+ G P E
Sbjct: 68 FDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTW 127
Query: 215 -----PGMVPIALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLC 269
G++P L +IF+ K+ + + S +S+ EIY+ E+L DLL D+
Sbjct: 128 EEVPLAGIIPRTLHQIFE---KLTDNGTEFSVKVSLLEIYN-----EELFDLLNPSSDVS 179
Query: 270 -----------MQQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCII 318
+ IKGL+EI + + + ++ + KR TA T N SSRS +
Sbjct: 180 ERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 239
Query: 319 NLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCL 378
++ E + L ++DLAG+E R+G R E+ IN + + G +
Sbjct: 240 SVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVI 299
Query: 379 RKPLQKH----FQNSLLTRYLRDYLEGKKRMTLILTV 411
+++ ++ S LTR L+D L G+ R ++I T+
Sbjct: 300 TALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 133/277 (48%), Gaps = 34/277 (12%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG--CPRE---- 214
F VF A + Q +VY +V P++++ + G + + A G +G+GKT T+ G P E
Sbjct: 68 FDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTW 127
Query: 215 -----PGMVPIALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLC 269
G++P L +IF+ K+ + + S +S+ EIY+ E+L DLL D+
Sbjct: 128 EEDPLAGIIPRTLHQIFE---KLTDNGTEFSVKVSLLEIYN-----EELFDLLNPSSDVS 179
Query: 270 -----------MQQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCII 318
+ IKGL+EI + + + ++ + KR TA T N SSRS +
Sbjct: 180 ERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 239
Query: 319 NLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCL 378
++ E + L ++DLAG+E R+G R E+ IN + + G +
Sbjct: 240 SVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVI 299
Query: 379 RKPLQKH----FQNSLLTRYLRDYLEGKKRMTLILTV 411
+++ ++ S LTR L+D L G+ R ++I T+
Sbjct: 300 TALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 133/277 (48%), Gaps = 34/277 (12%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG--CPRE---- 214
F VF A + Q +VY +V P++++ + G + + A G +G+GKT T+ G P E
Sbjct: 67 FDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTW 126
Query: 215 -----PGMVPIALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLC 269
G++P L +IF+ K+ + + S +S+ EIY+ E+L DLL D+
Sbjct: 127 EEDPLAGIIPRTLHQIFE---KLTDNGTEFSVKVSLLEIYN-----EELFDLLNPSSDVS 178
Query: 270 -----------MQQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCII 318
+ IKGL+EI + + + ++ + KR TA T N SSRS +
Sbjct: 179 ERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 238
Query: 319 NLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCL 378
++ E + L ++DLAG+E R+G R E+ IN + + G +
Sbjct: 239 SVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVI 298
Query: 379 RKPLQKH----FQNSLLTRYLRDYLEGKKRMTLILTV 411
+++ ++ S LTR L+D L G+ R ++I T+
Sbjct: 299 TALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATI 335
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 133/277 (48%), Gaps = 34/277 (12%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG--CPRE---- 214
F VF A + Q +VY +V P++++ + G + + A G +G+GKT T+ G P E
Sbjct: 59 FDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTW 118
Query: 215 -----PGMVPIALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLC 269
G++P L +IF+ K+ + + S +S+ EIY+ E+L DLL D+
Sbjct: 119 EEDPLAGIIPRTLHQIFE---KLTDNGTEFSVKVSLLEIYN-----EELFDLLNPSSDVS 170
Query: 270 -----------MQQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCII 318
+ IKGL+EI + + + ++ + KR TA T N SSRS +
Sbjct: 171 ERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 230
Query: 319 NLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCL 378
++ E + L ++DLAG+E R+G R E+ IN + + G +
Sbjct: 231 SVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVI 290
Query: 379 RKPLQKH----FQNSLLTRYLRDYLEGKKRMTLILTV 411
+++ ++ S LTR L+D L G+ R ++I T+
Sbjct: 291 TALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATI 327
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 133/277 (48%), Gaps = 34/277 (12%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG--CPRE---- 214
F VF A + Q +VY +V P++++ + G + + A G +G+GKT T+ G P E
Sbjct: 53 FDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTW 112
Query: 215 -----PGMVPIALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLC 269
G++P L +IF+ K+ + + S +S+ EIY+ E+L DLL D+
Sbjct: 113 EEDPLAGIIPRTLHQIFE---KLTDNGTEFSVKVSLLEIYN-----EELFDLLNPSSDVS 164
Query: 270 -----------MQQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCII 318
+ IKGL+EI + + + ++ + KR TA T N SSRS +
Sbjct: 165 ERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 224
Query: 319 NLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCL 378
++ E + L ++DLAG+E R+G R E+ IN + + G +
Sbjct: 225 SVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVI 284
Query: 379 RKPLQKH----FQNSLLTRYLRDYLEGKKRMTLILTV 411
+++ ++ S LTR L+D L G+ R ++I T+
Sbjct: 285 TALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATI 321
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 136/277 (49%), Gaps = 21/277 (7%)
Query: 164 VFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALK 223
VFS +SQ +V+++ V LV + G + + A G +G+GKT+T+ G PG+ AL+
Sbjct: 55 VFSPQASQQDVFQE-VQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQ 113
Query: 224 RIFKGTTKIRSSESTRSFYLSIFEIYSE-----RGK--GEKL-LDLLPDGVDLCMQQSTI 275
+F + ++S+ + +S EIY+E GK EKL + L PDG Q +
Sbjct: 114 LLFSEVQE-KASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDG----SGQLYV 168
Query: 276 KGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHA 335
GL E + + R T TN N SSRS ++ + + S G
Sbjct: 169 PGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTG---LR 225
Query: 336 NDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFG--LCLRKPLQKH--FQNSLL 391
L ++DLAG+ER ++G +G+RL E+ IN + G + + Q H F+NS L
Sbjct: 226 TTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKL 285
Query: 392 TRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQA 428
T L+D L G + +++ V E++ +T Y L+ A
Sbjct: 286 TYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFA 322
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 139/294 (47%), Gaps = 34/294 (11%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPR-EP---G 216
F VF S Q EV+E++ LV+ L G + A G +GSGKT T+ G P +P G
Sbjct: 87 FDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEG 145
Query: 217 MVPIALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV-----DLCMQ 271
++P AL+ +F ++ T SF S EIY+E + DLL G C
Sbjct: 146 LIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNE-----TVRDLLATGTRKGQGGECEI 200
Query: 272 QSTIKGLQEIIISDA--------AQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCA 323
+ G +E+ +++A + ++L+ A RA A T N +SSRS + L+ +
Sbjct: 201 RRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQIS 260
Query: 324 ANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGA----RLLESNFINNTSMVFGLCLR 379
SRG A L+++DLAG+ER G RL E+ IN++ GL +
Sbjct: 261 GEHSSRG---LQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIM 317
Query: 380 KPLQKH----FQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQAS 429
K ++NS LT L++ L G +M + + + EE+ ++ LR AS
Sbjct: 318 ALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFAS 371
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 133/293 (45%), Gaps = 31/293 (10%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPI 220
F VF + + VYE++ P+++ ++G +G + A G + SGKT+T+ G G++P
Sbjct: 48 FDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPR 107
Query: 221 ALKRIFKGTTKIRSSESTRSFYL--SIFEIYSERGKGEKLLDLLPDGVDL--------CM 270
A+ IF+ K R F L S EIY+ E + DLL +
Sbjct: 108 AIHDIFQKIKKF----PDREFLLRVSYMEIYN-----ETITDLLCGTQKMKPLIIREDVN 158
Query: 271 QQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRG 330
+ + L E ++ + A I + R T N +SSRS I + + E +G
Sbjct: 159 RNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESRE--KG 216
Query: 331 DGVHANDAV----LTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLRKPLQK-- 384
+ + +V L ++DLAG+ER +TG G RL E IN + + G ++K
Sbjct: 217 EPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQV 276
Query: 385 ----HFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMK 433
++++S LTR L++ L G + +I T+ D T+ + YMK
Sbjct: 277 GGFINYRDSKLTRILQNSLGGNAKTRIICTITPVSFDETLTALQFASTAKYMK 329
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 129/264 (48%), Gaps = 24/264 (9%)
Query: 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREP---G 216
F VF + +SQ +VY +V+D L+G +G + A G + SGKTHT+ G +P G
Sbjct: 47 AFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMG 106
Query: 217 MVPIALKRIFKGTTKIRSSESTRSFYL--SIFEIYSERGKGEKLLDLLPDGVDLCMQQS- 273
++P ++ IF I S + F++ S FEIY ++ + LLD+ + + ++
Sbjct: 107 IIPRIVQDIF---NYIYSMDENLEFHIKVSYFEIYLDKIR--DLLDVSKTNLSVHEDKNR 161
Query: 274 --TIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCI--INLRCAANELSR 329
+KG E + + I R A+TN N SSRS I IN++ + +
Sbjct: 162 VPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQ 221
Query: 330 GDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLRKPLQKH---- 385
L ++DLAG+E+ +TG +GA L E+ IN + G + +
Sbjct: 222 -----KLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVP 276
Query: 386 FQNSLLTRYLRDYLEGKKRMTLIL 409
+++S +TR L+D L G R T+++
Sbjct: 277 YRDSKMTRILQDSLGGNCRTTIVI 300
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 129/264 (48%), Gaps = 24/264 (9%)
Query: 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREP---G 216
F VF + +SQ +VY +V+D L+G +G + A G + SGKTHT+ G +P G
Sbjct: 47 AFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMG 106
Query: 217 MVPIALKRIFKGTTKIRSSESTRSFYL--SIFEIYSERGKGEKLLDLLPDGVDLCMQQS- 273
++P ++ IF I S + F++ S FEIY ++ + LLD+ + + ++
Sbjct: 107 IIPRIVQDIF---NYIYSMDENLEFHIKVSYFEIYLDKIR--DLLDVSKTNLSVHEDKNR 161
Query: 274 --TIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCI--INLRCAANELSR 329
+KG E + + I R A+TN N SSRS I IN++ + +
Sbjct: 162 VPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQ 221
Query: 330 GDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLRKPLQKH---- 385
L ++DLAG+E+ +TG +GA L E+ IN + G + +
Sbjct: 222 -----KLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVP 276
Query: 386 FQNSLLTRYLRDYLEGKKRMTLIL 409
+++S +TR L+D L G R T+++
Sbjct: 277 YRDSKMTRILQDSLGGNCRTTIVI 300
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 128/273 (46%), Gaps = 28/273 (10%)
Query: 153 IKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHT---IF 209
I +VY F VF ++SQ +VY + +V D L G +G + A G + SGKTHT +
Sbjct: 48 IAGKVYL-FDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVI 106
Query: 210 GCPREPGMVPIALKRIFKGTTKIRSSESTRSFYL--SIFEIYSERGKGEKLLDLLP-DGV 266
G + G++P + IF I + E F++ S +EIY +K+ DLL V
Sbjct: 107 GDSVKQGIIPRIVNDIF---NHIYAMEVNLEFHIKVSYYEIYM-----DKIRDLLDVSKV 158
Query: 267 DLCMQQST-----IKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLR 321
+L + + +KG E +S +I R A+TN N SSRS + +
Sbjct: 159 NLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLIN 218
Query: 322 CAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFG---LCL 378
L + L ++DLAG+E+ +TG +G L E+ IN + G L
Sbjct: 219 VKQENLENQKKLSGK---LYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISAL 275
Query: 379 RKPLQKH--FQNSLLTRYLRDYLEGKKRMTLIL 409
+ H +++S LTR L++ L G R T+++
Sbjct: 276 ADGNKTHIPYRDSKLTRILQESLGGNARTTIVI 308
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 128/264 (48%), Gaps = 24/264 (9%)
Query: 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREP---G 216
F VF + +SQ +VY +V+D L+G +G + A G + SGK HT+ G +P G
Sbjct: 47 AFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMG 106
Query: 217 MVPIALKRIFKGTTKIRSSESTRSFYL--SIFEIYSERGKGEKLLDLLPDGVDLCMQQS- 273
++P ++ IF I S + F++ S FEIY ++ + LLD+ + + ++
Sbjct: 107 IIPRIVQDIF---NYIYSMDENLEFHIKVSYFEIYLDKIR--DLLDVSKTNLSVHEDKNR 161
Query: 274 --TIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCI--INLRCAANELSR 329
+KG E + + I R A+TN N SSRS I IN++ + +
Sbjct: 162 VPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQ 221
Query: 330 GDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLRKPLQKH---- 385
L ++DLAG+E+ +TG +GA L E+ IN + G + +
Sbjct: 222 -----KLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVP 276
Query: 386 FQNSLLTRYLRDYLEGKKRMTLIL 409
+++S +TR L+D L G R T+++
Sbjct: 277 YRDSKMTRILQDSLGGNCRTTIVI 300
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 143/315 (45%), Gaps = 48/315 (15%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREP---GM 217
F V+ A S Q ++Y++ V PL++ L+G +G + A G +G+GKT+T+ G EP G+
Sbjct: 72 FDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGV 131
Query: 218 VPIALKRIFKGTTKIRSSES-TRSFYLSIFEIYSERGKGEKLLDLLPD--GVDLCMQQS- 273
+P A + IF ++ ++ + R+ YL I++ E++ DLL G L ++++
Sbjct: 132 IPNAFEHIFTHISRSQNQQYLVRASYLEIYQ--------EEIRDLLSKEPGKRLELKENP 183
Query: 274 ----TIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSR 329
IK L + + + E ++ RA T+ N SSRS I + +E
Sbjct: 184 ETGVYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGS 243
Query: 330 GDGVHANDAVLTIIDLAGAEREKRTGNQGA------------------------RLLESN 365
H L ++DLAG+ER+ + G A R E++
Sbjct: 244 DGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEAS 303
Query: 366 FINNT-----SMVFGLCLRKPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLD 420
IN + +++ L + +++S LTR L+D L G + ++ T+ Y +
Sbjct: 304 KINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDE 363
Query: 421 TSYLLRQASPYMKIK 435
+ LR A+ IK
Sbjct: 364 SLSTLRFANRAKNIK 378
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 143/286 (50%), Gaps = 30/286 (10%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPI 220
F +F + S V+E++ + L++ L G + + A G +GSGKT T+ P GM+P+
Sbjct: 434 FDKIFEREQSNDLVFEEL-SQLIQCSLDGTNVCVFAYGQTGSGKTFTM-SHPTN-GMIPL 490
Query: 221 ALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLCMQ--------- 271
+LK+IF +++ + + EIY+E ++DLL +D +
Sbjct: 491 SLKKIFNDIEELKEKGWSYTVRGKFIEIYNE-----AIVDLLNPKIDPNTKYEIKHDDIA 545
Query: 272 -QSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQC--IINLRCAANELS 328
++T+ + I I QA +++ +A KR+TA T SN+ SSRS II+L+ N L+
Sbjct: 546 GKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQ-GYNSLT 604
Query: 329 RGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNT-----SMVFGLCLRKPLQ 383
+ ++ L +IDLAG+ER + +G RL E+ IN + ++ L L+
Sbjct: 605 K----ESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSH 660
Query: 384 KHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQAS 429
++NS LT L+ L G + + + + +D +T LR A+
Sbjct: 661 VPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFAT 706
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 137/297 (46%), Gaps = 35/297 (11%)
Query: 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCP------R 213
GF V + D+ Q VY+ V PL+E F +G + + A G +GSGKT+T+
Sbjct: 53 GFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLED 112
Query: 214 EPGMVPIALKRIFKGTTKIRSSESTRSF-YLSIFEIYSERGKGEKLLDLLPDGV---DLC 269
E G+VP A+ FK I ++ ++S E+Y E+ DLL G D+
Sbjct: 113 EQGIVPRAMAEAFK---LIDENDLLDCLVHVSYLEVYK-----EEFRDLLEVGTASRDIQ 164
Query: 270 MQQS-----TIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRC-- 322
+++ + G++E+ + + SL+ R T T+ N+ SSRS + +
Sbjct: 165 LREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQ 224
Query: 323 ---AANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCL- 378
A + L R + +DLAG+ER +TG+ G RL ES IN++ + G +
Sbjct: 225 RGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVIS 284
Query: 379 ------RKPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQAS 429
R+ +++S +TR L+D L G + +I V D+ +T L AS
Sbjct: 285 ALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYAS 341
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 132/285 (46%), Gaps = 37/285 (12%)
Query: 152 RIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGC 211
RI S +Q F +F + E++E+ + LV+ L G + + A G +GSGKT+T+
Sbjct: 49 RILSYNFQ-FDMIFEPSHTNKEIFEE-IRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA 106
Query: 212 PREPGMVPIALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLL-----PDGV 266
GM+P+ L IFK T ++ EIY+E +LDLL D +
Sbjct: 107 G--DGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNE-----TILDLLRDFKSHDNI 159
Query: 267 DLCM-------------QQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSR 313
D + Q + I + + ++ +Q ++++ +A R+TA T SN +SSR
Sbjct: 160 DEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSR 219
Query: 314 SQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNT--- 370
S + + L G+ + L ++DLAG+ER + G RL E+ IN +
Sbjct: 220 SHSVFMVHINGRNLHTGE---TSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSC 276
Query: 371 --SMVFGLCLRKPLQKH--FQNSLLTRYLRDYLEGKKRMTLILTV 411
+++ L +++ F+NS LT L+ L G + + + +
Sbjct: 277 LGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNI 321
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 146/319 (45%), Gaps = 39/319 (12%)
Query: 130 CITVNDHNSVTLS-PPLALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLK 188
C T H+ T+ + Q ++ +++ F VF SSQ +++E MV+PL++ L
Sbjct: 76 CCTWTYHDESTVELQSIDAQAKSKMGQQIF-SFDQVFHPLSSQSDIFE-MVSPLIQSALD 133
Query: 189 GKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSSESTRSFYLSIFEI 248
G + + A G SGSGKT+T+ G P G++P + +F R+ + EI
Sbjct: 134 GYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEI 193
Query: 249 YSERGKGEKLLDLLPD---GVDLCMQQST-----IKGLQEIIISDAAQAESLIARAMLKR 300
Y+ E L DLL + +++ M ++ + + E + D L+ A + R
Sbjct: 194 YN-----EVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNR 248
Query: 301 ATAMTNSNNQSSRSQCIINL-----RCAANELSRGDGVHANDAVLTIIDLAGAEREKRTG 355
ATA T N +SSRS + L E+S G + ++DLAG+E K +
Sbjct: 249 ATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGS--------INLVDLAGSESPKTS- 299
Query: 356 NQGARLLESNFINN-----TSMVFGLCLRKPLQKHFQNSLLTRYLRDYLEGKKRMTLILT 410
R+ E+ IN T+++ L L+K ++NS LT L L G + + +
Sbjct: 300 ---TRMTETKNINRSLSELTNVILAL-LQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFIN 355
Query: 411 VKSGEEDYLDTSYLLRQAS 429
V ++ + ++ LR A+
Sbjct: 356 VSPFQDCFQESVKSLRFAA 374
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 129/281 (45%), Gaps = 27/281 (9%)
Query: 168 DSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCP---REPGMVPIALKR 224
D+SQ VYE + +V L G +G + G +G+GKT+T+ G + G++P AL++
Sbjct: 82 DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQ 141
Query: 225 IFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLL-------PDGVDLCM----QQS 273
+F+ + R + + + +S EIY+ E L DLL P + + Q
Sbjct: 142 VFRMIEE-RPTHAI-TVRVSYLEIYN-----ESLFDLLSTLPYVGPSVTPMTIVENPQGV 194
Query: 274 TIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGV 333
IKGL + S A SL+ R A N SSRS CI + A+ + +
Sbjct: 195 FIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEK 254
Query: 334 HANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNT-----SMVFGLCLRKPLQKHFQN 388
+ + ++DLAG+ER ++G++G L E+ +IN + + L +K F+
Sbjct: 255 YITSKI-NLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQ 313
Query: 389 SLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQAS 429
LT L+D L G M L+ + +T LR AS
Sbjct: 314 CKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFAS 354
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 147/309 (47%), Gaps = 41/309 (13%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPI 220
+ VF +++Q +V+E LV+ + G + + A G +GSGKT TI+G PG+ P
Sbjct: 51 YDRVFDGNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPR 109
Query: 221 ALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLL----PDGVDLCMQQS--- 273
A+ +F+ K S++ + S + E+Y + L+DLL + L +++
Sbjct: 110 AMSELFR-IMKKDSNKFSFSLKAYMVELYQ-----DTLVDLLLPKQAKRLKLDIKKDSKG 163
Query: 274 --TIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCII-------NLRCAA 324
+++ + + IS + +++I R +R T T N QSSRS I+ NL+ A
Sbjct: 164 MVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQA 223
Query: 325 NELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFG--LCLRKPL 382
++RG L+ +DLAG+ER K++G+ G +L E+ IN + G +
Sbjct: 224 --IARGK--------LSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSG 273
Query: 383 QKH--FQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVE 440
+H ++N LT + D L G + + + + E + +T L AS I V
Sbjct: 274 NQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSI----VN 329
Query: 441 DSSNFLCSK 449
D S + SK
Sbjct: 330 DPSKNVSSK 338
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 146/319 (45%), Gaps = 39/319 (12%)
Query: 130 CITVNDHNSVTLS-PPLALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLK 188
C T H+ T+ + Q ++ +++ F VF SSQ +++E MV+PL++ L
Sbjct: 87 CCTWTYHDESTVELQSIDAQAKSKMGQQIF-SFDQVFHPLSSQSDIFE-MVSPLIQSALD 144
Query: 189 GKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSSESTRSFYLSIFEI 248
G + + A G +GSGKT+T+ G P G++P + +F R+ + EI
Sbjct: 145 GYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEI 204
Query: 249 YSERGKGEKLLDLLPD---GVDLCMQQST-----IKGLQEIIISDAAQAESLIARAMLKR 300
Y+ E L DLL + +++ M ++ + + E + D L+ A + R
Sbjct: 205 YN-----EVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNR 259
Query: 301 ATAMTNSNNQSSRSQCIINL-----RCAANELSRGDGVHANDAVLTIIDLAGAEREKRTG 355
ATA T N +SSRS + L E+S G + ++DLAG+E K +
Sbjct: 260 ATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGS--------INLVDLAGSESPKTS- 310
Query: 356 NQGARLLESNFINN-----TSMVFGLCLRKPLQKHFQNSLLTRYLRDYLEGKKRMTLILT 410
R+ E+ IN T+++ L L+K ++NS LT L L G + + +
Sbjct: 311 ---TRMTETKNINRSLSELTNVILAL-LQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFIN 366
Query: 411 VKSGEEDYLDTSYLLRQAS 429
V ++ + ++ LR A+
Sbjct: 367 VSPFQDCFQESVKSLRFAA 385
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 146/319 (45%), Gaps = 39/319 (12%)
Query: 130 CITVNDHNSVTLS-PPLALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLK 188
C T H+ T+ + Q ++ +++ F VF SSQ +++E MV+PL++ L
Sbjct: 73 CCTWTYHDESTVELQSIDAQAKSKMGQQIF-SFDQVFHPLSSQSDIFE-MVSPLIQSALD 130
Query: 189 GKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSSESTRSFYLSIFEI 248
G + + A G +GSGKT+T+ G P G++P + +F R+ + EI
Sbjct: 131 GYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEI 190
Query: 249 YSERGKGEKLLDLLPD---GVDLCMQQST-----IKGLQEIIISDAAQAESLIARAMLKR 300
Y+ E L DLL + +++ M ++ + + E + D L+ A + R
Sbjct: 191 YN-----EVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNR 245
Query: 301 ATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTI-----IDLAGAEREKRTG 355
ATA T N +SSRS + L G HA +++ +DLAG+E K +
Sbjct: 246 ATASTAGNERSSRSHAVTKLELI--------GRHAEKQEISVGSINLVDLAGSESPKTS- 296
Query: 356 NQGARLLESNFINN-----TSMVFGLCLRKPLQKHFQNSLLTRYLRDYLEGKKRMTLILT 410
R+ E+ IN T+++ L L+K ++NS LT L L G + + +
Sbjct: 297 ---TRMTETKNINRSLSELTNVILAL-LQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFIN 352
Query: 411 VKSGEEDYLDTSYLLRQAS 429
V ++ + ++ LR A+
Sbjct: 353 VSPFQDCFQESVKSLRFAA 371
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 146/319 (45%), Gaps = 39/319 (12%)
Query: 130 CITVNDHNSVTLS-PPLALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLK 188
C T H+ T+ + Q ++ +++ F VF SSQ +++E MV+PL++ L
Sbjct: 79 CCTWTYHDESTVELQSIDAQAKSKMGQQIF-SFDQVFHPLSSQSDIFE-MVSPLIQSALD 136
Query: 189 GKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSSESTRSFYLSIFEI 248
G + + A G +GSGKT+T+ G P G++P + +F R+ + EI
Sbjct: 137 GYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEI 196
Query: 249 YSERGKGEKLLDLLPD---GVDLCMQQST-----IKGLQEIIISDAAQAESLIARAMLKR 300
Y+ E L DLL + +++ M ++ + + E + D L+ A + R
Sbjct: 197 YN-----EVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNR 251
Query: 301 ATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTI-----IDLAGAEREKRTG 355
ATA T N +SSRS + L G HA +++ +DLAG+E K +
Sbjct: 252 ATASTAGNERSSRSHAVTKLELI--------GRHAEKQEISVGSINLVDLAGSESPKTS- 302
Query: 356 NQGARLLESNFINN-----TSMVFGLCLRKPLQKHFQNSLLTRYLRDYLEGKKRMTLILT 410
R+ E+ IN T+++ L L+K ++NS LT L L G + + +
Sbjct: 303 ---TRMTETKNINRSLSELTNVILAL-LQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFIN 358
Query: 411 VKSGEEDYLDTSYLLRQAS 429
V ++ + ++ LR A+
Sbjct: 359 VSPFQDCFQESVKSLRFAA 377
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 135/297 (45%), Gaps = 35/297 (11%)
Query: 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCP------R 213
GF V + D+ Q VY+ V PL+E F +G + + A G +GSGKT+T+
Sbjct: 53 GFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLED 112
Query: 214 EPGMVPIALKRIFKGTTKIRSSESTRSF-YLSIFEIYSERGKGEKLLDLLPDGV---DLC 269
E G+VP A+ FK I ++ ++S E+Y E+ DLL G D+
Sbjct: 113 EQGIVPRAMAEAFK---LIDENDLLDCLVHVSYLEVYK-----EEFRDLLEVGTASRDIQ 164
Query: 270 MQQS-----TIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRC-- 322
+++ + G++E+ + + SL+ R T T+ N+ SSRS + +
Sbjct: 165 LREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQ 224
Query: 323 ---AANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCL- 378
A + L R + +DLAG+ER +TG+ G ES IN++ + G +
Sbjct: 225 RGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVIS 284
Query: 379 ------RKPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQAS 429
R+ +++S +TR L+D L G + +I V D+ +T L AS
Sbjct: 285 ALGDPQRRGSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYAS 341
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 134/279 (48%), Gaps = 30/279 (10%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPI 220
+ VF +SQ +++E LV+ + G + + A G +GSGKT TI+G PG+ P
Sbjct: 59 YDRVFDMRASQDDIFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPR 117
Query: 221 ALKRIFKGTTKIRSSESTR-SFYLSIF--EIYSERGKGEKLLDLL----PDGVDLCMQQS 273
A K +F I +S R SF L + E+Y + L+DLL + L +++
Sbjct: 118 ATKELF----NILKRDSKRFSFSLKAYMVELYQ-----DTLVDLLLPKSARRLKLEIKKD 168
Query: 274 T-----IKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELS 328
+ ++ + I IS + ++ R +R + TN N +SSRS I+++ + +L
Sbjct: 169 SKGMVFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQ 228
Query: 329 RGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFG--LCLRKPLQKH- 385
L+ +DLAG+ER K++G+ G +L E+ IN + G + +H
Sbjct: 229 TQSAARGK---LSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHI 285
Query: 386 -FQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSY 423
++N LT + D L G + + + V E + LD +Y
Sbjct: 286 PYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESN-LDETY 323
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 145/319 (45%), Gaps = 39/319 (12%)
Query: 130 CITVNDHNSVTLS-PPLALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLK 188
C T H+ T+ + Q ++ +++ F VF SSQ +++E MV+PL++ L
Sbjct: 76 CCTWTYHDESTVELQSIDAQAKSKMGQQIF-SFDQVFHPLSSQSDIFE-MVSPLIQSALD 133
Query: 189 GKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSSESTRSFYLSIFEI 248
G + + A G +GSGKT+T+ G P G++P + +F R+ + EI
Sbjct: 134 GYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEI 193
Query: 249 YSERGKGEKLLDLLPD---GVDLCMQQST-----IKGLQEIIISDAAQAESLIARAMLKR 300
Y+ E L DLL + +++ M ++ + + E + D L+ A + R
Sbjct: 194 YN-----EVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNR 248
Query: 301 ATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTI-----IDLAGAEREKRTG 355
ATA T N +SSRS + L G HA +++ +DLAG+E K +
Sbjct: 249 ATASTAGNERSSRSHAVTKLELI--------GRHAEKQEISVGSINLVDLAGSESPKTS- 299
Query: 356 NQGARLLESNFINN-----TSMVFGLCLRKPLQKHFQNSLLTRYLRDYLEGKKRMTLILT 410
R+ E+ I T+++ L L+K ++NS LT L L G + + +
Sbjct: 300 ---TRMTETKNIKRSLSELTNVILAL-LQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFIN 355
Query: 411 VKSGEEDYLDTSYLLRQAS 429
V ++ + ++ LR A+
Sbjct: 356 VSPFQDCFQESVKSLRFAA 374
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 126/288 (43%), Gaps = 32/288 (11%)
Query: 143 PPLALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGS 202
P L + +K ++++ + F + F +S VY PLV+ +G A G +GS
Sbjct: 108 PKLKVDLTKYLENQAF-CFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGS 166
Query: 203 GKTHTIFG------CPREPGMVPIALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGE 256
GKTHT+ G G+ +A + +F + R Y++ FEIY+
Sbjct: 167 GKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYN-----G 221
Query: 257 KLLDLLPDGVDLCM-----QQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQS 311
K+ DLL L + QQ + GLQE +++ A +I R + T +N+ S
Sbjct: 222 KVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNS 281
Query: 312 SRSQCIINLRCAANELSRGDG-VHANDAVLTIIDLAGAEREKRTGNQGARL-LESNFINN 369
SRS + L R G +H +++DLAG ER T + + +E IN
Sbjct: 282 SRSHACFQI------LLRTKGRLHGK---FSLVDLAGNERGADTSSADRQTRMEGAEINK 332
Query: 370 TSMVFGLCLRKPLQKH----FQNSLLTRYLRDYLEGKKRMTLILTVKS 413
+ + C+R Q F+ S LT+ LRD G+ T ++ + S
Sbjct: 333 SLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMIS 380
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 136/311 (43%), Gaps = 26/311 (8%)
Query: 138 SVTLSPPLALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAAL 197
SV PP + S + + F + F A SQ E+Y+ ++ PLV+ L+G A
Sbjct: 43 SVVQFPPWSDGKSLIVDQNEFH-FDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAY 101
Query: 198 GPSGSGKTHTIFGC------PREPGMVPIALKRIF-KGTTKIRSSESTRSFYLSIFEIYS 250
G +G+GK++++ P G++P AL IF + T + +++ Y S EIY+
Sbjct: 102 GQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYN 161
Query: 251 ERGKGEKLLDLLPDGVDLCMQQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQ 310
EK DLL + M + + + + A ++ R TN N+
Sbjct: 162 -----EKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSN 216
Query: 311 SSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNT 370
SSRS I+ + + + + + I+DLAG+E +RTG++G E IN
Sbjct: 217 SSRSHAIVTIHVKSK---------THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLG 267
Query: 371 SMVFGLCLRKPLQKH----FQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLR 426
+ + H +++S+LT L+ L + +T + + + D +T LR
Sbjct: 268 LLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLR 327
Query: 427 QASPYMKIKFD 437
+ K++ +
Sbjct: 328 FGTSAKKLRLE 338
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 139/323 (43%), Gaps = 40/323 (12%)
Query: 129 DCITVNDHNSVTL-SPPLALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFL 187
D IT+ + V + P + ++ ++++ ++ F Y F + VY PLVE
Sbjct: 111 DVITIPSKDVVMVHEPKQKVDLTRYLENQTFR-FDYAFDDSAPNEMVYRFTARPLVETIF 169
Query: 188 KGKSGMLAALGPSGSGKTHTIFG--------CPREPGMVPIALKRIFKGTTKIRSSESTR 239
+ A G +GSGKTHT+ G C + G+ +A + +F K +
Sbjct: 170 ERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSK--GIYALAARDVFLMLKKPNYKKLEL 227
Query: 240 SFYLSIFEIYSERGKGEKLLD------LLPDGVDLCMQQSTIKGLQEIIISDAAQAESLI 293
Y + FEIYS GK LL+ +L DG QQ + GLQE + LI
Sbjct: 228 QVYATFFEIYS--GKVFDLLNRKTKLRVLEDG----KQQVQVVGLQEREVKCVEDVLKLI 281
Query: 294 ARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKR 353
R + T++N SSRS + + L R +H ++IDLAG ER
Sbjct: 282 DIGNSCRTSGQTSANAHSSRSHAVFQI-----ILRRKGKLHGK---FSLIDLAGNERGAD 333
Query: 354 TGNQGARL-LESNFINNTSMVFGLCLR-----KPLQKHFQNSLLTRYLRDYLEGKK-RMT 406
T + + LE IN + + C+R KP F+ S LT+ LRD G+ R
Sbjct: 334 TSSADRQTRLEGAEINKSLLALKECIRALGRNKP-HTPFRASKLTQVLRDSFIGENSRTC 392
Query: 407 LILTVKSGEEDYLDTSYLLRQAS 429
+I T+ G +T LR A+
Sbjct: 393 MIATISPGMASCENTLNTLRYAN 415
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 126/288 (43%), Gaps = 32/288 (11%)
Query: 143 PPLALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGS 202
P L + +K ++++ + F + F +S VY PLV+ +G A G +GS
Sbjct: 36 PKLKVDLTKYLENQAF-CFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGS 94
Query: 203 GKTHTIFG------CPREPGMVPIALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGE 256
GKTHT+ G G+ +A + +F + R Y++ FEIY+
Sbjct: 95 GKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYN-----G 149
Query: 257 KLLDLLPDGVDLCM-----QQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQS 311
K+ DLL L + QQ + GLQE +++ A +I R + T +N+ S
Sbjct: 150 KVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNS 209
Query: 312 SRSQCIINLRCAANELSRGDG-VHANDAVLTIIDLAGAEREKRTGNQGARL-LESNFINN 369
SRS + L R G +H +++DLAG ER T + + +E IN
Sbjct: 210 SRSHACFQI------LLRTKGRLHGK---FSLVDLAGNERGADTSSADRQTRMEGAEINK 260
Query: 370 TSMVFGLCLRKPLQKH----FQNSLLTRYLRDYLEGKKRMTLILTVKS 413
+ + C+R Q F+ S LT+ LRD G+ T ++ + S
Sbjct: 261 SLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMIS 308
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 127/290 (43%), Gaps = 33/290 (11%)
Query: 143 PPLALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGS 202
P L + +K ++++ + F + F +S VY PLV+ +G A G +GS
Sbjct: 88 PKLKVDLTKYLENQAF-CFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGS 146
Query: 203 GKTHTIFG------CPREPGMVPIALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGE 256
GKTHT+ G G+ +A + +F + + Y++ FEIY+
Sbjct: 147 GKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYN-----G 201
Query: 257 KLLDLLPDGVDLCM-----QQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQS 311
KL DLL L + QQ + GLQE +++ A +I R + T +N+ S
Sbjct: 202 KLFDLLNKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNS 261
Query: 312 SRSQCIINLRCAANELSRGDG-VHANDAVLTIIDLAGAEREKRTGNQGARL-LESNFINN 369
SRS + + R G +H +++DLAG ER T + + +E IN
Sbjct: 262 SRSHACFQI------ILRAKGRMHGK---FSLVDLAGNERGADTSSADRQTRMEGAEINK 312
Query: 370 TSMVFGLCLRKPLQKH----FQNSLLTRYLRDYLEGKK-RMTLILTVKSG 414
+ + C+R Q F+ S LT+ LRD G+ R +I T+ G
Sbjct: 313 SLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPG 362
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 131/300 (43%), Gaps = 26/300 (8%)
Query: 138 SVTLSPPLALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAAL 197
SV PP + S + + F + F A SQ E+Y+ ++ PLV+ L+G A
Sbjct: 43 SVVQFPPWSDGKSLIVDQNEFH-FDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAY 101
Query: 198 GPSGSGKTHTIFGC------PREPGMVPIALKRIF-KGTTKIRSSESTRSFYLSIFEIYS 250
G +G+GK++++ P G++P AL IF + T + +++ Y S EIY+
Sbjct: 102 GQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYN 161
Query: 251 ERGKGEKLLDLLPDGVDLCMQQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQ 310
EK DLL + M + + + + A ++ R TN N+
Sbjct: 162 -----EKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSN 216
Query: 311 SSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNT 370
SSRS I+ + + + + + I+DLAG+E +RTG++G E IN
Sbjct: 217 SSRSHAIVTIHVKSK---------THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLG 267
Query: 371 SMVFGLCLRKPLQKH----FQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLR 426
+ + H +++S+LT L+ L + +T + + + D +T LR
Sbjct: 268 LLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLR 327
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 149/342 (43%), Gaps = 72/342 (21%)
Query: 150 SKRIKSEVYQGFSYVFSADSSQGEVY---EKMVNPLVEDFL----KGKSGMLAALGPSGS 202
S+R+ E F F + +++ E Y E + + L E+FL +G + A G +GS
Sbjct: 89 SRRVLEEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGS 148
Query: 203 GKTHTIFGCPREPGMVPIALKRIFKGTTKIRSSESTRSF--YLSIFEIYSERGKGEKLLD 260
GK++T+ G P +PG++P + +F+ + S+ +S FE+Y+E + + L
Sbjct: 149 GKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVR-DLLAP 207
Query: 261 LLPDGVDLCMQ---------------QSTIKGLQEII----ISDAAQAESLIARAMLKRA 301
++P+ ++ + ++GL+EII I D + R
Sbjct: 208 VVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGS------------RT 255
Query: 302 TAMTNSNNQSSRSQCI--INLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGA 359
A T N+ SSRS + I L+ ++L D + + + ++DLAG+ER K T G
Sbjct: 256 VASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERS-SRIRLVDLAGSERAKSTEATGQ 314
Query: 360 RLLESNFINNTSMVFGLCL----------------------RKPLQKH----FQNSLLTR 393
RL E + IN + G + R P + +++S+LT
Sbjct: 315 RLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTW 374
Query: 394 YLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIK 435
L+D L G + +I + DY +T LR A +I+
Sbjct: 375 LLKDSLGGNSKTAMIACISP--TDYDETLSTLRYADQAKRIR 414
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 137/305 (44%), Gaps = 40/305 (13%)
Query: 129 DCITVNDHNSVTLSPP-LALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFL 187
D ITV ++ ++ + P + +K I+ + VF VYE + PL+ D
Sbjct: 22 DIITVKNNCTLYIDEPRYKVDMTKYIERHEFI-VDKVFDDTVDNFTVYENTIKPLIIDLY 80
Query: 188 K-GKSGMLAALGPSGSGKTHTI-----FGCPREPGMVPIALKRIFKGTTKIRSSESTRSF 241
+ G A G +GSGKT+T+ +G PG+ A IF I ++T+
Sbjct: 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFT-FLNIYDKDNTKGI 139
Query: 242 YLSIFEIYSERGKGEKLLDLLPDGVDLCMQQSTIKGLQEIIISD-----AAQAESLIAR- 295
++S +EIY KL DLL M + G +E+++ D E LI +
Sbjct: 140 FISFYEIYCG-----KLYDLLQKRK---MVAALENGKKEVVVKDLKILRVLTKEELILKM 191
Query: 296 --AMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAV--LTIIDLAGAERE 351
+L R + + N++SSRS I+N+ ++ N ++ + IDLAG+ER
Sbjct: 192 IDGVLLRKIGVNSQNDESSRSHAILNIDLK--------DINKNTSLGKIAFIDLAGSERG 243
Query: 352 KRTGNQGARL-LESNFINNTSMVFGLCLR--KPLQKH--FQNSLLTRYLRDYLEGKKRMT 406
T +Q + + IN + + C+R + H F++S LT+ LRD GK +
Sbjct: 244 ADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSI 303
Query: 407 LILTV 411
+I +
Sbjct: 304 MIANI 308
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 126/294 (42%), Gaps = 36/294 (12%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPI 220
F +F + E++ K V L++ L G + + A G +GSGKT+T+ P + G+VP
Sbjct: 78 FDKIFDQQETNDEIF-KEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLN-PGD-GIVPA 134
Query: 221 ALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV-------------- 266
+ IF K+ + + EIY+E ++DLL G
Sbjct: 135 TINHIFSWIDKLAARGWSYKVSCEFIEIYNE-----NIVDLLRSGAPSQENNDRNADSKH 189
Query: 267 ----DLCMQQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRC 322
D ++ + I + ++ + ++ RA R+TA T +N SSRS I +
Sbjct: 190 EIRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHL 249
Query: 323 AANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFG---LCLR 379
G+ + +L ++DLAG+ER + G RL E+ IN + G L
Sbjct: 250 EGKNEGTGE---KSQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALN 306
Query: 380 KP--LQKH--FQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQAS 429
P ++H F+NS LT L+ L G + + + + +T LR AS
Sbjct: 307 SPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFAS 360
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 145/335 (43%), Gaps = 34/335 (10%)
Query: 130 CITVNDHNSVTLSPPLALQTSKRIKSEVYQGFSYVFSAD---SSQGEVYEKMVNPLVEDF 186
CI ++ T+ P + + + S Y +S+ D +SQ +VY + +++
Sbjct: 42 CIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHA 101
Query: 187 LKGKSGMLAALGPSGSGKTHTIFGCPR--EPGMVPIALKRIFKGTTKIRSSESTRSFYLS 244
+G + + A G +G+GK++T+ G + G++P + +F + + S +S
Sbjct: 102 FEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVS 161
Query: 245 IFEIYSERGKGEKLLDLL--PDGVDLCMQQSTIKG-----LQEIIISDAAQAESLIARAM 297
EIY ER + DLL + +L +++ + G L ++ ++ + L+
Sbjct: 162 YMEIYCER-----VRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGN 216
Query: 298 LKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHAND-AVLTIIDLAGAEREKRTGN 356
R A TN N SSRS + N+ + + ++++DLAG+ER TG
Sbjct: 217 KARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGA 276
Query: 357 QGARLLESNFINNTSMVFGLCLRKPLQKH----------------FQNSLLTRYLRDYLE 400
+G RL E IN + G + + +++S+LT LR+ L
Sbjct: 277 KGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLG 336
Query: 401 GKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIK 435
G R ++ + + +Y +T LR A +I+
Sbjct: 337 GNSRTAMVAALSPADINYDETLSTLRYADRAKQIR 371
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 129/293 (44%), Gaps = 31/293 (10%)
Query: 169 SSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPR--EPGMVPIALKRIF 226
+SQ +VY + +++ +G + + A G +G+GK++T+ G + G++P + +F
Sbjct: 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLF 127
Query: 227 KGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLL--PDGVDLCMQQSTIKG-----LQ 279
+ + S +S EIY ER + DLL + +L +++ + G L
Sbjct: 128 SRINDTTNDNMSYSVEVSYMEIYCER-----VRDLLNPKNKGNLRVREHPLLGPYVEDLS 182
Query: 280 EIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHAND-A 338
++ ++ + L+ R A TN N SSRS + N+ + +
Sbjct: 183 KLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS 242
Query: 339 VLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLRKPLQKH------------- 385
++++DLAG+ER TG +G RL E IN + G + +
Sbjct: 243 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTD 302
Query: 386 ---FQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIK 435
+++S+LT LR+ L G R ++ + + +Y +T LR A +I+
Sbjct: 303 FIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIR 355
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 129/293 (44%), Gaps = 31/293 (10%)
Query: 169 SSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPR--EPGMVPIALKRIF 226
+SQ +VY + +++ +G + + A G +G+GK++T+ G + G++P + +F
Sbjct: 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLF 127
Query: 227 KGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLL--PDGVDLCMQQSTIKG-----LQ 279
+ + S +S EIY ER + DLL + +L +++ + G L
Sbjct: 128 SRINDTTNDNMSYSVEVSYMEIYCER-----VRDLLNPKNKGNLRVREHPLLGPYVEDLS 182
Query: 280 EIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHAND-A 338
++ ++ + L+ R A TN N SSRS + N+ + +
Sbjct: 183 KLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS 242
Query: 339 VLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLRKPLQKH------------- 385
++++DLAG+ER TG +G RL E IN + G + +
Sbjct: 243 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTD 302
Query: 386 ---FQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIK 435
+++S+LT LR+ L G R ++ + + +Y +T LR A +I+
Sbjct: 303 FIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIR 355
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 129/293 (44%), Gaps = 31/293 (10%)
Query: 169 SSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPR--EPGMVPIALKRIF 226
+SQ +VY + +++ +G + + A G +G+GK++T+ G + G++P + +F
Sbjct: 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLF 127
Query: 227 KGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLL--PDGVDLCMQQSTIKG-----LQ 279
+ + S +S EIY ER + DLL + +L +++ + G L
Sbjct: 128 SRINDTTNDNMSYSVEVSYMEIYCER-----VRDLLNPKNKGNLRVREHPLLGPYVEDLS 182
Query: 280 EIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHAND-A 338
++ ++ + L+ R A TN N SSRS + N+ + +
Sbjct: 183 KLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS 242
Query: 339 VLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLRKPLQKH------------- 385
++++DLAG+ER TG +G RL E IN + G + +
Sbjct: 243 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTD 302
Query: 386 ---FQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIK 435
+++S+LT LR+ L G R ++ + + +Y +T LR A +I+
Sbjct: 303 FIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIR 355
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 99/208 (47%), Gaps = 28/208 (13%)
Query: 159 QGFSYVFS----ADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPRE 214
QG YVF +++Q +VY +V+D L+G +G + A G + SGKTHT+ G +
Sbjct: 42 QGKPYVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHD 101
Query: 215 P---GMVPIALKRIFKGTTKIRSSESTRSFYL--SIFEIYSERGKGEKLLDLLPDGVDLC 269
P G++P IF I S + F++ S FEIY ++ + LLD+ +L
Sbjct: 102 PQLMGIIPRIAHDIFD---HIYSMDENLEFHIKVSYFEIYLDKIR--DLLDV--SKTNLA 154
Query: 270 MQQST-----IKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCI--INLRC 322
+ + +KG E +S + +I R A+TN N SSRS I IN++
Sbjct: 155 VHEDKNRVPYVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQ 214
Query: 323 AANELSRGDGVHANDAVLTIIDLAGAER 350
E + L ++DLAG+E+
Sbjct: 215 ENVETEK-----KLSGKLYLVDLAGSEK 237
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 124/294 (42%), Gaps = 38/294 (12%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPI 220
F +F + +V+ K V LV+ L G + + A G +GSGKT T+ P + G++P
Sbjct: 67 FDKIFDQQDTNVDVF-KEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLN-PGD-GIIPS 123
Query: 221 ALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLCMQQSTIKGLQE 280
+ IF K+++ EIY+E ++DLL D ++ T GL+
Sbjct: 124 TISHIFNWINKLKTKGWDYKVNCEFIEIYNE-----NIVDLLRS--DNNNKEDTSIGLKH 176
Query: 281 IIISD------------------AAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRC 322
I D E ++ +A R+TA T SN SSRS I +
Sbjct: 177 EIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHL 236
Query: 323 AANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR--- 379
+ + G + L ++DLAG+ER + G RL E+ IN + G +
Sbjct: 237 SGSNAKTGAHSY---GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALG 293
Query: 380 --KPLQKH--FQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQAS 429
++H F+NS LT L+ L G + + + + +T LR AS
Sbjct: 294 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 347
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 124/294 (42%), Gaps = 38/294 (12%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPI 220
F +F + +V+ K V LV+ L G + + A G +GSGKT T+ P + G++P
Sbjct: 55 FDKIFDQQDTNVDVF-KEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLN-PGD-GIIPS 111
Query: 221 ALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLCMQQSTIKGLQE 280
+ IF K+++ EIY+E ++DLL D ++ T GL+
Sbjct: 112 TISHIFNWINKLKTKGWDYKVNCEFIEIYNE-----NIVDLLRS--DNNNKEDTSIGLKH 164
Query: 281 IIISD------------------AAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRC 322
I D E ++ +A R+TA T SN SSRS I +
Sbjct: 165 EIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHL 224
Query: 323 AANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR--- 379
+ + G + L ++DLAG+ER + G RL E+ IN + G +
Sbjct: 225 SGSNAKTGAHSY---GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALG 281
Query: 380 --KPLQKH--FQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQAS 429
++H F+NS LT L+ L G + + + + +T LR AS
Sbjct: 282 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 335
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 124/294 (42%), Gaps = 38/294 (12%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPI 220
F +F + +V+ K V LV+ L G + + A G +GSGKT T+ P + G++P
Sbjct: 112 FDKIFDQQDTNVDVF-KEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLN-PGD-GIIPS 168
Query: 221 ALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLCMQQSTIKGLQE 280
+ IF K+++ EIY+E ++DLL D ++ T GL+
Sbjct: 169 TISHIFNWINKLKTKGWDYKVNAEFIEIYNEN-----IVDLLRS--DNNNKEDTSIGLKH 221
Query: 281 IIISD------------------AAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRC 322
I D E ++ +A R+TA T SN SSRS I +
Sbjct: 222 EIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHL 281
Query: 323 AANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR--- 379
+ + G + L ++DLAG+ER + G RL E+ IN + G +
Sbjct: 282 SGSNAKTGAHSY---GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALG 338
Query: 380 --KPLQKH--FQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQAS 429
++H F+NS LT L+ L G + + + + +T LR AS
Sbjct: 339 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 392
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 123/294 (41%), Gaps = 38/294 (12%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPI 220
F +F + +V+ K V LV+ L G + + A G +GSGKT T+ P + G++P
Sbjct: 56 FDKIFDQQDTNVDVF-KEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLN-PGD-GIIPS 112
Query: 221 ALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLCMQQSTIKGLQE 280
+ IF K+++ EIY+E ++DLL D ++ T GL+
Sbjct: 113 TISHIFNWINKLKTKGWDYKVNCEFIEIYNE-----NIVDLLRS--DNNNKEDTSIGLKH 165
Query: 281 IIISD------------------AAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRC 322
I D E ++ +A R+TA T SN SSRS I +
Sbjct: 166 EIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHL 225
Query: 323 AANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR--- 379
+ + G + L ++DLAG+ R + G RL E+ IN + G +
Sbjct: 226 SGSNAKTGAHSY---GTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALG 282
Query: 380 --KPLQKH--FQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQAS 429
++H F+NS LT L+ L G + + + + +T LR AS
Sbjct: 283 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 336
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 123/294 (41%), Gaps = 38/294 (12%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPI 220
F +F + +V+ K V LV+ L G + + A G +GSGKT T+ P + G++P
Sbjct: 56 FDKIFDQQDTNVDVF-KEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLN-PGD-GIIPS 112
Query: 221 ALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLCMQQSTIKGLQE 280
+ IF K+++ EIY+E ++DLL D ++ T GL+
Sbjct: 113 TISHIFNWINKLKTKGWDYKVNCEFIEIYNE-----NIVDLLRS--DNNNKEDTSIGLKH 165
Query: 281 IIISD------------------AAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRC 322
I D E ++ +A R+TA T SN SSRS I +
Sbjct: 166 EIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHL 225
Query: 323 AANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR--- 379
+ + G + L ++DLAG+ER + G RL E+ I + G +
Sbjct: 226 SGSNAKTGAHSY---GTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALG 282
Query: 380 --KPLQKH--FQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQAS 429
++H F+NS LT L+ L G + + + + +T LR AS
Sbjct: 283 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 336
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 123/294 (41%), Gaps = 38/294 (12%)
Query: 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPI 220
F +F + +V+ K V LV+ L G + + A G +GSGKT T+ P + G++P
Sbjct: 56 FDKIFDQQDTNVDVF-KEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLN-PGD-GIIPS 112
Query: 221 ALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLCMQQSTIKGLQE 280
+ IF K+++ EIY+ E ++DLL D ++ T GL+
Sbjct: 113 TISHIFNWINKLKTKGWDYKVNCEFIEIYN-----ENIVDLLRS--DNNNKEDTSIGLKH 165
Query: 281 IIISD------------------AAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRC 322
I D E ++ +A R+TA T SN SS S I +
Sbjct: 166 EIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHL 225
Query: 323 AANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR--- 379
+ + G + L ++DLAG+ER + G RL E+ IN + G +
Sbjct: 226 SGSNAKTGAHSY---GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALG 282
Query: 380 --KPLQKH--FQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQAS 429
++H F+NS LT L+ L G + + + + +T LR AS
Sbjct: 283 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 336
>pdb|3T38|A Chain A, Corynebacterium Glutamicum Thioredoxin-Dependent Arsenate
Reductase Cg_arsc1'
pdb|3T38|B Chain B, Corynebacterium Glutamicum Thioredoxin-Dependent Arsenate
Reductase Cg_arsc1'
Length = 213
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 18/130 (13%)
Query: 142 SPPLALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVN------------PLVEDFLKG 189
+P L RI +E+ + VFSA++ ++E V+ L E F K
Sbjct: 6 APNLHTNILNRIANELALTYQGVFSAETINRYIFESYVSLARTAKIHTHLPILAEGFAKD 65
Query: 190 KSGMLA-ALGPSGSGKTHTIFGCPREPGMVPIA---LKRIFKGTTKIRSSES--TRSFYL 243
+ LA A G S +F C G IA L + ++RS+ S +
Sbjct: 66 RLHALAVAEGKVASPVPQVLFICVHNAGRSQIASALLSHYAGSSVEVRSAGSLPASEIHP 125
Query: 244 SIFEIYSERG 253
+ EI SERG
Sbjct: 126 LVLEILSERG 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,123,538
Number of Sequences: 62578
Number of extensions: 498567
Number of successful extensions: 1388
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1205
Number of HSP's gapped (non-prelim): 61
length of query: 501
length of database: 14,973,337
effective HSP length: 103
effective length of query: 398
effective length of database: 8,527,803
effective search space: 3394065594
effective search space used: 3394065594
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)