Query 046715
Match_columns 501
No_of_seqs 305 out of 2050
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:46:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243 Kinesin-like protein [ 100.0 1.1E-85 2.3E-90 722.9 32.7 331 71-444 43-400 (1041)
2 KOG4280 Kinesin-like protein [ 100.0 6.1E-87 1.3E-91 705.7 21.9 344 75-458 3-364 (574)
3 KOG0245 Kinesin-like protein [ 100.0 8.8E-86 1.9E-90 710.9 23.5 335 76-452 3-366 (1221)
4 PLN03188 kinesin-12 family pro 100.0 1.8E-81 3.9E-86 695.3 37.7 338 76-466 97-467 (1320)
5 cd01370 KISc_KIP3_like Kinesin 100.0 7.4E-80 1.6E-84 633.9 30.5 321 78-434 1-338 (338)
6 KOG0241 Kinesin-like protein [ 100.0 4.3E-79 9.4E-84 648.3 26.2 382 75-499 2-414 (1714)
7 cd01373 KISc_KLP2_like Kinesin 100.0 1.9E-78 4.1E-83 623.2 30.1 312 77-434 1-337 (337)
8 cd01368 KISc_KIF23_like Kinesi 100.0 2.6E-78 5.6E-83 623.8 30.5 314 77-432 1-345 (345)
9 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.9E-77 4.2E-82 620.5 32.0 327 77-441 1-356 (356)
10 KOG0242 Kinesin-like protein [ 100.0 9E-78 2E-82 658.3 26.3 290 156-456 52-358 (675)
11 cd01367 KISc_KIF2_like Kinesin 100.0 7.7E-77 1.7E-81 607.9 29.8 312 77-432 1-322 (322)
12 KOG0240 Kinesin (SMY1 subfamil 100.0 5.4E-77 1.2E-81 614.7 27.9 321 75-443 5-340 (607)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 1.5E-75 3.2E-80 601.3 31.8 317 77-434 1-333 (333)
14 cd01364 KISc_BimC_Eg5 Kinesin 100.0 2.1E-75 4.6E-80 604.6 32.6 324 77-443 2-352 (352)
15 cd01376 KISc_KID_like Kinesin 100.0 1.3E-74 2.7E-79 591.0 30.0 304 78-432 1-319 (319)
16 cd01374 KISc_CENP_E Kinesin mo 100.0 1.4E-74 3E-79 591.4 30.4 309 78-434 1-321 (321)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 2.1E-74 4.6E-79 591.1 31.2 310 77-434 2-325 (325)
18 cd01375 KISc_KIF9_like Kinesin 100.0 1.8E-73 3.9E-78 585.8 30.8 312 78-432 1-334 (334)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 2.2E-73 4.9E-78 587.3 31.2 310 78-435 2-341 (341)
20 cd01366 KISc_C_terminal Kinesi 100.0 1.9E-72 4.2E-77 577.6 31.4 313 76-436 1-328 (329)
21 KOG0239 Kinesin (KAR3 subfamil 100.0 6.3E-73 1.4E-77 618.0 18.2 332 64-439 301-645 (670)
22 cd00106 KISc Kinesin motor dom 100.0 2.2E-70 4.8E-75 562.1 31.8 314 78-432 1-328 (328)
23 smart00129 KISc Kinesin motor, 100.0 7.3E-70 1.6E-74 559.8 31.7 321 78-441 1-335 (335)
24 PF00225 Kinesin: Kinesin moto 100.0 2.5E-69 5.5E-74 555.8 20.0 275 155-434 39-335 (335)
25 KOG0247 Kinesin-like protein [ 100.0 1.1E-68 2.3E-73 565.3 23.8 325 74-437 28-439 (809)
26 KOG0246 Kinesin-like protein [ 100.0 2.1E-66 4.7E-71 534.3 25.1 320 76-436 207-543 (676)
27 KOG0244 Kinesin-like protein [ 100.0 1.1E-64 2.3E-69 549.2 8.3 312 123-455 9-342 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 1.4E-59 2.9E-64 510.3 26.6 277 157-442 56-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 1.4E-49 3E-54 376.4 17.7 175 174-413 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 98.0 3.5E-08 7.6E-13 108.5 -12.0 203 157-380 353-564 (568)
31 PF00308 Bac_DnaA: Bacterial d 94.5 0.024 5.1E-07 55.1 2.4 49 158-209 4-52 (219)
32 COG0556 UvrB Helicase subunit 94.3 0.059 1.3E-06 58.0 5.0 88 158-251 4-98 (663)
33 COG2805 PilT Tfp pilus assembl 93.8 0.037 8.1E-07 55.8 2.4 30 179-208 113-142 (353)
34 PRK06893 DNA replication initi 93.4 0.06 1.3E-06 52.6 3.0 46 159-210 13-58 (229)
35 PRK06620 hypothetical protein; 92.3 0.083 1.8E-06 51.2 2.3 48 158-209 12-62 (214)
36 PRK12377 putative replication 91.8 0.12 2.7E-06 51.2 2.9 49 160-210 72-120 (248)
37 COG2804 PulE Type II secretory 91.0 0.11 2.4E-06 55.9 1.7 38 180-227 247-284 (500)
38 PRK06526 transposase; Provisio 91.0 0.14 2.9E-06 51.1 2.2 46 160-210 72-117 (254)
39 PRK08084 DNA replication initi 90.9 0.18 3.9E-06 49.5 3.0 45 159-209 19-63 (235)
40 PRK14086 dnaA chromosomal repl 90.9 0.14 3E-06 56.9 2.4 51 157-210 283-333 (617)
41 PRK09087 hypothetical protein; 90.7 0.16 3.5E-06 49.6 2.4 46 158-209 17-62 (226)
42 PRK08116 hypothetical protein; 90.4 0.18 3.9E-06 50.6 2.5 49 159-209 82-132 (268)
43 PRK07952 DNA replication prote 90.0 0.26 5.7E-06 48.8 3.2 50 159-210 69-118 (244)
44 PRK05642 DNA replication initi 89.8 0.24 5.2E-06 48.5 2.8 48 158-209 15-63 (234)
45 PRK14088 dnaA chromosomal repl 89.6 0.22 4.9E-06 53.5 2.6 48 158-209 101-148 (440)
46 PF04851 ResIII: Type III rest 88.9 0.24 5.1E-06 45.3 1.9 36 171-210 8-44 (184)
47 TIGR02928 orc1/cdc6 family rep 88.7 0.4 8.7E-06 49.7 3.7 47 161-208 10-57 (365)
48 TIGR03420 DnaA_homol_Hda DnaA 88.5 0.37 8E-06 46.3 3.1 44 159-208 12-55 (226)
49 TIGR00362 DnaA chromosomal rep 88.2 0.34 7.4E-06 51.4 2.8 49 158-209 106-154 (405)
50 PRK08181 transposase; Validate 87.9 0.39 8.4E-06 48.3 2.8 46 160-210 79-125 (269)
51 PRK00149 dnaA chromosomal repl 87.8 0.36 7.8E-06 52.0 2.7 49 158-209 118-166 (450)
52 PRK08903 DnaA regulatory inact 87.7 0.43 9.3E-06 46.2 3.0 45 159-208 15-59 (227)
53 cd00009 AAA The AAA+ (ATPases 87.6 0.39 8.5E-06 41.4 2.4 27 182-208 10-36 (151)
54 PRK14087 dnaA chromosomal repl 87.5 0.38 8.3E-06 51.9 2.7 48 159-209 112-159 (450)
55 PRK00411 cdc6 cell division co 87.0 0.59 1.3E-05 49.1 3.7 38 170-208 34-72 (394)
56 COG5008 PilU Tfp pilus assembl 86.9 0.48 1E-05 47.2 2.7 35 174-208 109-144 (375)
57 PRK08939 primosomal protein Dn 86.8 0.41 8.9E-06 49.0 2.3 50 160-210 125-175 (306)
58 PRK08727 hypothetical protein; 85.9 0.51 1.1E-05 46.2 2.4 18 192-209 42-59 (233)
59 PRK06835 DNA replication prote 85.5 0.49 1.1E-05 48.9 2.1 36 173-210 167-202 (329)
60 PRK10436 hypothetical protein; 85.4 0.39 8.4E-06 52.0 1.4 28 182-209 209-236 (462)
61 PF13245 AAA_19: Part of AAA d 85.4 0.46 1E-05 38.2 1.5 26 183-209 3-28 (76)
62 COG1474 CDC6 Cdc6-related prot 84.8 0.7 1.5E-05 48.5 2.9 27 182-208 32-59 (366)
63 TIGR02538 type_IV_pilB type IV 84.4 0.48 1E-05 52.7 1.6 29 182-210 307-335 (564)
64 TIGR02533 type_II_gspE general 84.0 0.54 1.2E-05 51.3 1.7 28 182-209 233-260 (486)
65 PF00270 DEAD: DEAD/DEAH box h 83.9 0.55 1.2E-05 42.5 1.5 27 182-210 7-33 (169)
66 cd00046 DEXDc DEAD-like helica 83.8 0.43 9.4E-06 40.7 0.7 17 194-210 3-19 (144)
67 COG0593 DnaA ATPase involved i 83.1 0.74 1.6E-05 48.8 2.2 49 158-209 83-131 (408)
68 PF01935 DUF87: Domain of unkn 82.9 0.46 1E-05 46.0 0.6 15 194-208 26-40 (229)
69 PF13401 AAA_22: AAA domain; P 82.7 0.42 9.2E-06 41.4 0.2 18 191-208 4-21 (131)
70 PF00437 T2SE: Type II/IV secr 82.6 0.56 1.2E-05 46.7 1.1 18 191-208 127-144 (270)
71 cd01131 PilT Pilus retraction 82.4 0.54 1.2E-05 44.8 0.8 19 191-209 1-19 (198)
72 TIGR01420 pilT_fam pilus retra 82.3 0.72 1.6E-05 47.9 1.8 28 182-209 113-140 (343)
73 TIGR02525 plasmid_TraJ plasmid 81.9 0.78 1.7E-05 48.3 1.9 19 190-208 148-166 (372)
74 PRK06921 hypothetical protein; 81.9 1.3 2.7E-05 44.5 3.3 35 174-209 98-135 (266)
75 TIGR02524 dot_icm_DotB Dot/Icm 81.6 0.81 1.8E-05 47.9 1.8 22 187-208 130-151 (358)
76 PF13604 AAA_30: AAA domain; P 81.4 0.84 1.8E-05 43.4 1.7 26 183-208 10-35 (196)
77 cd01129 PulE-GspE PulE/GspE Th 81.4 0.88 1.9E-05 45.5 2.0 27 183-209 72-98 (264)
78 smart00382 AAA ATPases associa 81.4 0.62 1.3E-05 39.6 0.8 17 192-208 3-19 (148)
79 COG1484 DnaC DNA replication p 81.3 1.3 2.7E-05 44.2 3.0 41 167-210 84-124 (254)
80 TIGR03015 pepcterm_ATPase puta 80.7 1.1 2.4E-05 44.2 2.4 24 185-208 37-60 (269)
81 PF05970 PIF1: PIF1-like helic 80.7 1.2 2.5E-05 46.7 2.7 37 168-208 3-39 (364)
82 PF01637 Arch_ATPase: Archaeal 80.0 0.9 2E-05 43.1 1.5 30 179-208 8-37 (234)
83 KOG2543 Origin recognition com 79.7 0.6 1.3E-05 48.7 0.1 38 192-250 31-68 (438)
84 PRK09183 transposase/IS protei 79.6 1.2 2.6E-05 44.4 2.3 44 161-209 77-120 (259)
85 PTZ00112 origin recognition co 79.5 1 2.2E-05 52.1 1.8 27 182-208 770-798 (1164)
86 PF12846 AAA_10: AAA-like doma 79.3 0.75 1.6E-05 45.7 0.7 19 191-209 1-19 (304)
87 PF13191 AAA_16: AAA ATPase do 79.3 0.8 1.7E-05 42.1 0.8 22 187-208 20-41 (185)
88 PRK12422 chromosomal replicati 78.8 1.4 3.1E-05 47.4 2.7 49 158-209 107-159 (445)
89 PRK13894 conjugal transfer ATP 78.4 1 2.3E-05 46.3 1.4 28 180-208 138-165 (319)
90 PF01695 IstB_IS21: IstB-like 78.2 1.3 2.8E-05 41.6 1.9 19 192-210 48-66 (178)
91 TIGR02782 TrbB_P P-type conjug 78.2 0.9 2E-05 46.3 0.9 28 180-208 122-149 (299)
92 smart00053 DYNc Dynamin, GTPas 76.8 7.4 0.00016 38.4 6.8 52 283-350 86-137 (240)
93 PF05673 DUF815: Protein of un 76.6 0.92 2E-05 44.8 0.4 45 159-208 24-69 (249)
94 PF00448 SRP54: SRP54-type pro 76.5 0.99 2.2E-05 43.1 0.6 17 193-209 3-19 (196)
95 KOG0239 Kinesin (KAR3 subfamil 76.5 2.7 5.8E-05 47.6 4.0 84 159-264 28-111 (670)
96 TIGR00631 uvrb excinuclease AB 75.6 2.3 5.1E-05 48.1 3.3 87 159-251 2-95 (655)
97 KOG0989 Replication factor C, 75.6 2.1 4.5E-05 43.6 2.6 27 182-208 48-74 (346)
98 PF00004 AAA: ATPase family as 75.4 1.1 2.3E-05 38.6 0.5 15 194-208 1-15 (132)
99 PF13479 AAA_24: AAA domain 75.2 1.3 2.9E-05 42.6 1.1 20 191-210 3-22 (213)
100 PF13207 AAA_17: AAA domain; P 75.2 1.2 2.6E-05 38.1 0.7 16 193-208 1-16 (121)
101 PF06309 Torsin: Torsin; Inte 74.5 1.8 3.8E-05 38.5 1.6 27 192-228 53-80 (127)
102 PRK12402 replication factor C 73.0 2.4 5.3E-05 43.2 2.5 41 160-208 13-53 (337)
103 cd01130 VirB11-like_ATPase Typ 72.9 2.2 4.7E-05 40.1 1.9 29 179-208 14-42 (186)
104 PF13086 AAA_11: AAA domain; P 72.7 1.8 4E-05 40.9 1.4 17 193-209 19-35 (236)
105 COG4962 CpaF Flp pilus assembl 72.1 2.1 4.6E-05 44.2 1.7 29 179-208 162-190 (355)
106 PRK13833 conjugal transfer pro 72.1 1.8 3.9E-05 44.6 1.2 27 181-208 135-161 (323)
107 PF06048 DUF927: Domain of unk 71.7 3.2 7E-05 41.9 3.0 37 176-213 179-221 (286)
108 smart00487 DEXDc DEAD-like hel 71.4 2.6 5.6E-05 38.3 2.0 19 192-210 25-43 (201)
109 PRK13900 type IV secretion sys 71.2 2.2 4.7E-05 44.2 1.6 29 179-208 149-177 (332)
110 KOG1924 RhoA GTPase effector D 71.0 11 0.00024 42.7 6.9 10 370-379 909-918 (1102)
111 PRK03992 proteasome-activating 70.6 1.7 3.8E-05 45.9 0.8 50 159-208 128-182 (389)
112 PRK12723 flagellar biosynthesi 70.4 3.9 8.4E-05 43.3 3.3 18 191-208 174-191 (388)
113 PRK13851 type IV secretion sys 70.2 2.5 5.4E-05 44.1 1.8 29 179-208 151-179 (344)
114 TIGR03499 FlhF flagellar biosy 69.7 4.1 9E-05 41.1 3.2 17 193-209 196-212 (282)
115 PHA02544 44 clamp loader, smal 69.4 3.1 6.8E-05 42.2 2.3 21 188-208 39-60 (316)
116 TIGR01242 26Sp45 26S proteasom 68.9 1.9 4.1E-05 45.0 0.6 50 159-208 119-173 (364)
117 PRK06547 hypothetical protein; 68.8 3.6 7.9E-05 38.3 2.4 29 180-208 4-32 (172)
118 PF01580 FtsK_SpoIIIE: FtsK/Sp 68.6 1.8 3.8E-05 41.1 0.3 17 193-209 40-56 (205)
119 cd00268 DEADc DEAD-box helicas 68.5 3.2 6.9E-05 38.9 2.0 23 184-208 31-53 (203)
120 TIGR00635 ruvB Holliday juncti 68.5 2.8 6.1E-05 42.3 1.8 38 170-208 8-47 (305)
121 PF00910 RNA_helicase: RNA hel 68.3 1.7 3.6E-05 37.0 0.0 26 194-229 1-26 (107)
122 PF00580 UvrD-helicase: UvrD/R 68.2 2.3 4.9E-05 42.5 1.0 21 189-209 11-31 (315)
123 CHL00081 chlI Mg-protoporyphyr 67.9 2.4 5.3E-05 44.2 1.1 43 158-208 13-55 (350)
124 PF02562 PhoH: PhoH-like prote 67.9 3.1 6.8E-05 40.1 1.8 19 190-208 18-36 (205)
125 PF07724 AAA_2: AAA domain (Cd 67.8 2.3 5E-05 39.6 0.9 17 192-208 4-20 (171)
126 PTZ00454 26S protease regulato 67.5 2 4.4E-05 45.6 0.5 50 159-208 142-196 (398)
127 PF13671 AAA_33: AAA domain; P 67.5 2.3 5E-05 37.4 0.8 16 193-208 1-16 (143)
128 PRK11776 ATP-dependent RNA hel 67.3 3.1 6.8E-05 44.8 1.9 24 183-208 35-58 (460)
129 PRK10536 hypothetical protein; 67.0 3.5 7.6E-05 41.2 2.0 40 159-208 52-91 (262)
130 PTZ00424 helicase 45; Provisio 66.8 3.1 6.7E-05 43.6 1.7 25 182-208 58-82 (401)
131 TIGR02903 spore_lon_C ATP-depe 66.8 3.6 7.8E-05 46.3 2.3 41 160-208 152-192 (615)
132 PHA00729 NTP-binding motif con 66.5 4.2 9.1E-05 39.8 2.4 31 179-209 5-35 (226)
133 PF03215 Rad17: Rad17 cell cyc 65.9 3.6 7.9E-05 45.2 2.0 30 179-208 31-62 (519)
134 PF05496 RuvB_N: Holliday junc 65.8 6.8 0.00015 38.4 3.6 41 167-208 25-67 (233)
135 PF00063 Myosin_head: Myosin h 65.7 3.9 8.4E-05 46.6 2.3 35 173-208 67-102 (689)
136 PF07728 AAA_5: AAA domain (dy 65.1 2.3 5E-05 37.5 0.3 15 194-208 2-16 (139)
137 PF13238 AAA_18: AAA domain; P 64.7 2.6 5.5E-05 36.1 0.5 15 194-208 1-15 (129)
138 COG1419 FlhF Flagellar GTP-bin 64.1 5.3 0.00011 42.3 2.7 38 171-208 179-220 (407)
139 PRK13342 recombination factor 63.7 4.1 8.9E-05 43.4 1.9 44 160-208 10-53 (413)
140 PRK11192 ATP-dependent RNA hel 63.7 4.1 8.8E-05 43.5 1.9 25 182-208 31-55 (434)
141 PRK13764 ATPase; Provisional 63.4 3.7 8E-05 45.9 1.5 19 191-209 257-275 (602)
142 KOG0926 DEAH-box RNA helicase 62.8 5.2 0.00011 45.6 2.5 18 191-208 271-288 (1172)
143 PF06414 Zeta_toxin: Zeta toxi 62.6 3.4 7.4E-05 39.2 0.9 20 189-208 13-32 (199)
144 PRK04837 ATP-dependent RNA hel 62.4 4.3 9.3E-05 43.2 1.8 25 182-208 38-62 (423)
145 KOG3859 Septins (P-loop GTPase 62.1 4.6 0.0001 40.6 1.8 24 185-208 36-59 (406)
146 PRK14722 flhF flagellar biosyn 61.9 3.5 7.5E-05 43.5 0.9 18 191-208 137-154 (374)
147 PF02456 Adeno_IVa2: Adenoviru 61.9 2.9 6.3E-05 42.7 0.3 17 193-209 89-105 (369)
148 COG1223 Predicted ATPase (AAA+ 61.4 3.5 7.6E-05 41.2 0.8 18 191-208 151-168 (368)
149 PRK10416 signal recognition pa 61.2 7.2 0.00016 40.1 3.1 18 191-208 114-131 (318)
150 PRK04195 replication factor C 61.2 6.3 0.00014 42.9 2.8 44 160-208 12-56 (482)
151 TIGR00348 hsdR type I site-spe 61.0 5.4 0.00012 45.3 2.4 31 179-210 247-282 (667)
152 PRK10590 ATP-dependent RNA hel 60.5 5.3 0.00011 43.1 2.1 24 183-208 32-55 (456)
153 PRK11448 hsdR type I restricti 60.3 4.8 0.0001 48.4 1.8 31 179-210 422-452 (1123)
154 PRK14961 DNA polymerase III su 59.9 5.8 0.00013 41.5 2.2 41 160-208 14-55 (363)
155 COG1201 Lhr Lhr-like helicases 59.7 12 0.00026 43.2 4.8 25 183-209 31-55 (814)
156 KOG1547 Septin CDC10 and relat 59.7 8.8 0.00019 37.9 3.2 21 188-208 43-63 (336)
157 PRK11331 5-methylcytosine-spec 59.5 5.6 0.00012 42.9 2.0 27 180-208 185-211 (459)
158 TIGR02881 spore_V_K stage V sp 58.7 3.9 8.4E-05 40.6 0.6 17 192-208 43-59 (261)
159 PF13555 AAA_29: P-loop contai 58.4 4.3 9.4E-05 31.4 0.7 15 194-208 26-40 (62)
160 PLN00020 ribulose bisphosphate 58.3 9 0.00019 40.4 3.2 73 159-231 112-205 (413)
161 PLN03025 replication factor C 57.9 7.3 0.00016 39.9 2.5 42 160-209 11-52 (319)
162 PRK00440 rfc replication facto 57.7 7.3 0.00016 39.3 2.4 21 188-208 35-55 (319)
163 KOG1924 RhoA GTPase effector D 57.6 31 0.00067 39.3 7.2 12 367-378 899-910 (1102)
164 KOG0336 ATP-dependent RNA heli 57.6 8.9 0.00019 40.5 3.0 118 135-262 197-341 (629)
165 PF10236 DAP3: Mitochondrial r 57.5 6.8 0.00015 40.1 2.1 23 187-209 19-41 (309)
166 KOG0736 Peroxisome assembly fa 57.3 8.8 0.00019 43.8 3.1 25 214-238 786-810 (953)
167 smart00242 MYSc Myosin. Large 57.1 8.7 0.00019 43.8 3.1 35 173-208 74-109 (677)
168 TIGR01241 FtsH_fam ATP-depende 56.9 4.8 0.0001 43.9 1.0 48 159-208 52-105 (495)
169 COG1219 ClpX ATP-dependent pro 56.8 4.7 0.0001 41.4 0.8 18 191-208 97-114 (408)
170 smart00763 AAA_PrkA PrkA AAA d 56.8 11 0.00023 39.5 3.5 43 161-208 49-95 (361)
171 PF12775 AAA_7: P-loop contain 56.1 6.6 0.00014 39.5 1.8 26 182-208 25-50 (272)
172 COG4096 HsdR Type I site-speci 56.0 9.4 0.0002 43.7 3.1 37 173-210 167-204 (875)
173 PRK00080 ruvB Holliday junctio 56.0 6.8 0.00015 40.2 1.9 45 160-209 23-69 (328)
174 PRK11634 ATP-dependent RNA hel 55.9 6.4 0.00014 44.4 1.8 25 182-208 36-60 (629)
175 TIGR00614 recQ_fam ATP-depende 55.9 7.4 0.00016 42.2 2.2 25 182-208 19-43 (470)
176 TIGR01618 phage_P_loop phage n 55.6 4.8 0.0001 39.2 0.7 20 191-210 12-31 (220)
177 TIGR02788 VirB11 P-type DNA tr 55.4 8.2 0.00018 39.4 2.4 29 179-208 133-161 (308)
178 cd01120 RecA-like_NTPases RecA 55.3 4.7 0.0001 35.6 0.5 15 194-208 2-16 (165)
179 cd01123 Rad51_DMC1_radA Rad51_ 55.2 7 0.00015 37.7 1.7 30 179-208 4-36 (235)
180 PF13173 AAA_14: AAA domain 55.1 5.2 0.00011 35.0 0.8 16 193-208 4-19 (128)
181 KOG0335 ATP-dependent RNA heli 54.9 4.5 9.8E-05 43.6 0.4 25 185-211 107-131 (482)
182 cd01850 CDC_Septin CDC/Septin. 54.7 5.8 0.00013 39.9 1.1 21 188-208 1-21 (276)
183 PRK04537 ATP-dependent RNA hel 54.6 6.7 0.00014 43.7 1.7 25 182-208 39-63 (572)
184 PF05729 NACHT: NACHT domain 54.5 5.7 0.00012 35.4 1.0 16 193-208 2-17 (166)
185 KOG0739 AAA+-type ATPase [Post 54.5 7.3 0.00016 39.7 1.7 72 160-231 131-223 (439)
186 PRK14974 cell division protein 54.4 11 0.00025 39.0 3.2 18 191-208 140-157 (336)
187 PF00735 Septin: Septin; Inte 54.3 3.7 8.1E-05 41.5 -0.4 21 188-208 1-21 (281)
188 COG1125 OpuBA ABC-type proline 54.2 5.3 0.00011 39.9 0.7 12 197-208 33-44 (309)
189 cd01383 MYSc_type_VIII Myosin 54.0 12 0.00025 42.8 3.5 35 173-208 74-109 (677)
190 TIGR02902 spore_lonB ATP-depen 54.0 7.9 0.00017 42.8 2.1 41 160-208 63-103 (531)
191 cd01384 MYSc_type_XI Myosin mo 54.0 11 0.00023 43.0 3.2 21 188-208 85-105 (674)
192 TIGR02640 gas_vesic_GvpN gas v 53.9 10 0.00022 37.7 2.7 28 179-208 11-38 (262)
193 PRK00771 signal recognition pa 53.8 14 0.00031 39.7 4.0 18 191-208 95-112 (437)
194 KOG0340 ATP-dependent RNA heli 53.7 14 0.00031 38.4 3.7 29 181-211 36-64 (442)
195 PRK01297 ATP-dependent RNA hel 53.4 7.4 0.00016 42.2 1.7 25 182-208 117-141 (475)
196 TIGR00618 sbcc exonuclease Sbc 53.4 12 0.00025 44.9 3.6 17 192-208 27-43 (1042)
197 PRK09270 nucleoside triphospha 53.3 12 0.00027 36.2 3.2 37 172-208 13-50 (229)
198 PRK04328 hypothetical protein; 53.0 9.2 0.0002 37.8 2.2 29 179-207 8-39 (249)
199 cd00124 MYSc Myosin motor doma 52.6 12 0.00025 42.7 3.2 34 174-208 69-103 (679)
200 TIGR02030 BchI-ChlI magnesium 52.4 8 0.00017 40.2 1.7 42 159-208 1-42 (337)
201 PHA02244 ATPase-like protein 52.3 14 0.0003 39.0 3.4 26 181-208 111-136 (383)
202 cd01382 MYSc_type_VI Myosin mo 52.2 11 0.00024 43.2 3.0 34 174-208 74-108 (717)
203 cd01381 MYSc_type_VII Myosin m 52.2 13 0.00027 42.4 3.3 34 174-208 69-103 (671)
204 TIGR03819 heli_sec_ATPase heli 52.0 8.8 0.00019 39.9 2.0 29 179-208 167-195 (340)
205 cd01377 MYSc_type_II Myosin mo 51.8 12 0.00026 42.8 3.1 35 173-208 73-108 (693)
206 cd01385 MYSc_type_IX Myosin mo 51.6 12 0.00027 42.7 3.2 34 174-208 77-111 (692)
207 PRK05580 primosome assembly pr 51.4 7.3 0.00016 44.4 1.3 40 163-209 141-180 (679)
208 PTZ00361 26 proteosome regulat 51.4 6.4 0.00014 42.4 0.8 49 160-208 181-234 (438)
209 cd02021 GntK Gluconate kinase 51.3 6.1 0.00013 35.2 0.6 15 194-208 2-16 (150)
210 COG1126 GlnQ ABC-type polar am 51.1 6.6 0.00014 38.3 0.8 23 186-208 17-45 (240)
211 COG2256 MGS1 ATPase related to 51.0 8.4 0.00018 40.7 1.6 43 160-207 22-64 (436)
212 PRK05703 flhF flagellar biosyn 50.8 6.6 0.00014 42.1 0.8 18 192-209 222-239 (424)
213 cd01387 MYSc_type_XV Myosin mo 50.8 13 0.00029 42.3 3.3 34 174-208 70-104 (677)
214 cd01378 MYSc_type_I Myosin mot 50.7 14 0.0003 42.2 3.4 34 174-208 69-103 (674)
215 PRK13341 recombination factor 50.6 9.7 0.00021 43.7 2.2 45 160-209 26-70 (725)
216 TIGR00376 DNA helicase, putati 50.6 9.3 0.0002 43.2 2.0 18 193-210 175-192 (637)
217 PF13476 AAA_23: AAA domain; P 50.5 7 0.00015 36.1 0.9 18 191-208 19-36 (202)
218 PRK11889 flhF flagellar biosyn 50.3 13 0.00029 39.6 2.9 17 192-208 242-258 (436)
219 COG0419 SbcC ATPase involved i 50.3 17 0.00037 42.9 4.2 35 191-227 25-66 (908)
220 cd03274 ABC_SMC4_euk Eukaryoti 50.2 6.3 0.00014 37.9 0.5 16 193-208 27-42 (212)
221 TIGR02237 recomb_radB DNA repa 50.2 8.7 0.00019 36.4 1.5 25 184-208 2-29 (209)
222 PRK00131 aroK shikimate kinase 50.0 7.4 0.00016 35.2 0.9 17 192-208 5-21 (175)
223 cd01380 MYSc_type_V Myosin mot 49.5 14 0.0003 42.2 3.2 34 174-208 69-103 (691)
224 TIGR01243 CDC48 AAA family ATP 49.5 8.6 0.00019 44.2 1.6 50 159-208 175-229 (733)
225 TIGR01359 UMP_CMP_kin_fam UMP- 49.4 7.1 0.00015 36.0 0.7 15 194-208 2-16 (183)
226 cd00820 PEPCK_HprK Phosphoenol 49.3 7.7 0.00017 33.4 0.9 17 192-208 16-32 (107)
227 PRK07261 topology modulation p 49.2 7.2 0.00016 36.1 0.7 15 194-208 3-17 (171)
228 PRK10917 ATP-dependent DNA hel 49.2 11 0.00025 42.8 2.5 22 188-209 279-300 (681)
229 PHA02624 large T antigen; Prov 48.9 13 0.00027 41.7 2.6 27 182-208 420-448 (647)
230 TIGR03158 cas3_cyano CRISPR-as 48.7 10 0.00022 39.5 1.9 26 183-208 6-31 (357)
231 PLN00206 DEAD-box ATP-dependen 48.6 12 0.00025 41.3 2.3 25 182-208 151-175 (518)
232 PF08298 AAA_PrkA: PrkA AAA do 48.4 27 0.00058 36.5 4.8 60 163-227 62-142 (358)
233 PRK06995 flhF flagellar biosyn 48.3 7.4 0.00016 42.4 0.7 17 192-208 257-273 (484)
234 CHL00176 ftsH cell division pr 47.9 9.3 0.0002 43.2 1.4 17 192-208 217-233 (638)
235 PRK10865 protein disaggregatio 47.9 14 0.0003 43.4 2.9 17 192-208 599-615 (857)
236 cd01127 TrwB Bacterial conjuga 47.7 7.3 0.00016 41.5 0.6 18 191-208 42-59 (410)
237 PRK14723 flhF flagellar biosyn 47.7 14 0.00029 42.6 2.7 17 192-208 186-202 (767)
238 PRK11057 ATP-dependent DNA hel 47.7 12 0.00025 42.1 2.2 24 183-208 34-57 (607)
239 COG5019 CDC3 Septin family pro 47.6 10 0.00022 39.6 1.5 24 188-211 20-46 (373)
240 PF07693 KAP_NTPase: KAP famil 47.6 13 0.00029 37.5 2.5 34 175-208 4-37 (325)
241 COG3829 RocR Transcriptional r 47.6 13 0.00028 40.8 2.4 43 157-205 240-282 (560)
242 PRK06696 uridine kinase; Valid 47.6 15 0.00034 35.3 2.8 30 179-208 7-39 (223)
243 PHA02653 RNA helicase NPH-II; 47.4 13 0.00028 42.3 2.5 33 169-207 163-195 (675)
244 PRK08118 topology modulation p 47.3 8.1 0.00017 35.7 0.7 15 194-208 4-18 (167)
245 cd01126 TraG_VirD4 The TraG/Tr 47.3 9.2 0.0002 40.2 1.3 16 194-209 2-17 (384)
246 TIGR02322 phosphon_PhnN phosph 47.0 8.2 0.00018 35.6 0.7 16 193-208 3-18 (179)
247 PRK11034 clpA ATP-dependent Cl 46.8 16 0.00034 42.3 3.1 18 191-208 488-505 (758)
248 TIGR00602 rad24 checkpoint pro 46.5 11 0.00024 42.5 1.8 39 170-209 88-128 (637)
249 KOG2228 Origin recognition com 46.4 14 0.00031 38.3 2.4 40 165-208 27-66 (408)
250 COG3598 RepA RecA-family ATPas 46.2 9.1 0.0002 39.4 0.9 62 160-227 59-121 (402)
251 TIGR01613 primase_Cterm phage/ 46.1 9.1 0.0002 38.9 1.0 44 161-208 47-93 (304)
252 COG1136 SalX ABC-type antimicr 45.9 8 0.00017 37.8 0.5 15 194-208 34-48 (226)
253 PRK06067 flagellar accessory p 45.6 14 0.0003 35.8 2.1 30 179-208 10-42 (234)
254 TIGR01313 therm_gnt_kin carboh 45.5 7.3 0.00016 35.3 0.1 15 194-208 1-15 (163)
255 KOG0953 Mitochondrial RNA heli 45.2 9.7 0.00021 41.8 1.0 39 193-231 193-237 (700)
256 smart00489 DEXDc3 DEAD-like he 45.0 15 0.00033 37.1 2.4 36 168-209 10-45 (289)
257 smart00488 DEXDc2 DEAD-like he 45.0 15 0.00033 37.1 2.4 36 168-209 10-45 (289)
258 TIGR00643 recG ATP-dependent D 44.9 14 0.0003 41.7 2.3 18 191-208 256-273 (630)
259 TIGR03689 pup_AAA proteasome A 44.6 8.5 0.00018 42.3 0.5 16 193-208 218-233 (512)
260 PF06745 KaiC: KaiC; InterPro 44.6 14 0.0003 35.5 2.0 28 181-208 6-36 (226)
261 PRK11664 ATP-dependent RNA hel 44.6 15 0.00032 42.8 2.5 28 179-208 10-37 (812)
262 cd01428 ADK Adenylate kinase ( 44.5 9.4 0.0002 35.4 0.7 15 194-208 2-16 (194)
263 PRK12724 flagellar biosynthesi 44.5 18 0.00039 38.8 2.9 17 192-208 224-240 (432)
264 PF08477 Miro: Miro-like prote 44.4 8.9 0.00019 32.3 0.5 15 194-208 2-16 (119)
265 cd00464 SK Shikimate kinase (S 44.4 8.9 0.00019 34.1 0.5 16 193-208 1-16 (154)
266 TIGR03238 dnd_assoc_3 dnd syst 44.3 13 0.00028 40.5 1.7 27 183-209 18-50 (504)
267 PRK09361 radB DNA repair and r 44.3 14 0.00031 35.4 2.0 30 179-208 8-40 (225)
268 cd01386 MYSc_type_XVIII Myosin 44.0 18 0.00039 41.8 3.0 34 174-208 69-103 (767)
269 TIGR01389 recQ ATP-dependent D 43.9 14 0.00031 41.2 2.2 25 182-208 21-45 (591)
270 KOG2035 Replication factor C, 43.6 21 0.00047 36.1 3.1 39 179-227 21-60 (351)
271 COG0606 Predicted ATPase with 43.6 10 0.00022 40.9 0.9 30 186-220 195-224 (490)
272 PRK10246 exonuclease subunit S 43.3 26 0.00057 42.0 4.3 18 191-208 30-47 (1047)
273 TIGR02746 TraC-F-type type-IV 43.3 9.3 0.0002 44.2 0.6 18 191-208 430-447 (797)
274 PRK06217 hypothetical protein; 43.2 9.9 0.00022 35.4 0.7 15 194-208 4-18 (183)
275 CHL00181 cbbX CbbX; Provisiona 43.0 9.9 0.00021 38.5 0.7 15 194-208 62-76 (287)
276 PRK06305 DNA polymerase III su 42.8 16 0.00034 39.6 2.2 41 160-208 15-56 (451)
277 cd01393 recA_like RecA is a b 42.7 17 0.00037 34.7 2.3 30 179-208 4-36 (226)
278 PRK14964 DNA polymerase III su 42.7 15 0.00032 40.3 1.9 41 160-208 11-52 (491)
279 TIGR02880 cbbX_cfxQ probable R 42.6 9.8 0.00021 38.4 0.6 16 193-208 60-75 (284)
280 TIGR02639 ClpA ATP-dependent C 42.6 19 0.00041 41.4 2.9 17 192-208 485-501 (731)
281 PF04548 AIG1: AIG1 family; I 42.6 11 0.00024 36.1 0.9 16 193-208 2-17 (212)
282 PF00485 PRK: Phosphoribulokin 42.5 9.7 0.00021 35.8 0.5 15 194-208 2-16 (194)
283 TIGR00064 ftsY signal recognit 42.4 12 0.00027 37.5 1.2 18 191-208 72-89 (272)
284 cd01379 MYSc_type_III Myosin m 42.3 20 0.00044 40.6 3.1 34 174-208 69-103 (653)
285 PRK12726 flagellar biosynthesi 42.2 11 0.00024 40.0 0.8 18 192-209 207-224 (407)
286 PF00931 NB-ARC: NB-ARC domain 42.2 20 0.00044 35.4 2.8 30 179-208 5-36 (287)
287 COG1222 RPT1 ATP-dependent 26S 41.9 11 0.00024 39.4 0.8 49 160-208 149-202 (406)
288 PRK08233 hypothetical protein; 41.9 11 0.00023 34.6 0.7 16 193-208 5-20 (182)
289 COG0630 VirB11 Type IV secreto 41.8 9.8 0.00021 39.0 0.4 18 192-209 144-161 (312)
290 TIGR03744 traC_PFL_4706 conjug 41.7 10 0.00022 44.7 0.5 18 191-208 475-492 (893)
291 PRK14721 flhF flagellar biosyn 41.7 11 0.00025 40.3 0.9 18 191-208 191-208 (420)
292 PF10923 DUF2791: P-loop Domai 41.7 20 0.00044 38.3 2.8 30 179-208 37-66 (416)
293 TIGR00231 small_GTP small GTP- 41.6 10 0.00022 32.6 0.5 16 193-208 3-18 (161)
294 cd02020 CMPK Cytidine monophos 41.4 11 0.00025 32.9 0.7 15 194-208 2-16 (147)
295 PHA01747 putative ATP-dependen 41.3 16 0.00036 38.3 1.9 31 178-208 177-207 (425)
296 PF12774 AAA_6: Hydrolytic ATP 41.3 16 0.00036 35.7 1.9 40 192-231 33-83 (231)
297 PRK13767 ATP-dependent helicas 41.3 15 0.00033 43.1 2.0 23 184-208 42-64 (876)
298 TIGR03263 guanyl_kin guanylate 41.2 12 0.00025 34.5 0.8 16 193-208 3-18 (180)
299 PRK00300 gmk guanylate kinase; 41.1 12 0.00025 35.3 0.8 18 191-208 5-22 (205)
300 cd02023 UMPK Uridine monophosp 41.0 11 0.00023 35.5 0.5 15 194-208 2-16 (198)
301 PF00158 Sigma54_activat: Sigm 40.9 18 0.00038 33.6 2.0 21 188-208 19-39 (168)
302 PRK14531 adenylate kinase; Pro 40.8 12 0.00025 34.9 0.8 16 193-208 4-19 (183)
303 PRK10867 signal recognition pa 40.6 25 0.00055 37.8 3.3 18 191-208 100-117 (433)
304 TIGR03881 KaiC_arch_4 KaiC dom 40.5 18 0.00039 34.7 2.1 28 181-208 7-37 (229)
305 PRK14956 DNA polymerase III su 40.2 17 0.00036 39.7 1.9 41 160-208 16-57 (484)
306 PF10412 TrwB_AAD_bind: Type I 40.0 10 0.00022 40.1 0.2 16 193-208 17-32 (386)
307 TIGR03877 thermo_KaiC_1 KaiC d 39.9 20 0.00042 35.0 2.2 28 180-207 7-37 (237)
308 PRK10078 ribose 1,5-bisphospho 39.5 12 0.00027 34.8 0.7 16 193-208 4-19 (186)
309 TIGR01817 nifA Nif-specific re 39.4 15 0.00032 40.6 1.4 45 158-208 192-236 (534)
310 TIGR03345 VI_ClpV1 type VI sec 39.3 25 0.00054 41.2 3.3 17 192-208 597-613 (852)
311 KOG0354 DEAD-box like helicase 39.1 21 0.00046 40.7 2.5 25 181-208 69-93 (746)
312 cd02025 PanK Pantothenate kina 39.1 9.7 0.00021 36.9 -0.1 12 197-208 5-16 (220)
313 COG3842 PotA ABC-type spermidi 39.1 12 0.00026 39.1 0.5 13 196-208 36-48 (352)
314 PRK14963 DNA polymerase III su 38.9 18 0.00039 39.7 1.9 42 160-208 12-53 (504)
315 COG4525 TauB ABC-type taurine 38.7 15 0.00033 35.4 1.2 16 193-208 33-48 (259)
316 PRK01172 ski2-like helicase; P 38.6 18 0.0004 41.0 2.0 30 168-207 24-53 (674)
317 PF03193 DUF258: Protein of un 38.6 18 0.00039 33.5 1.6 26 181-208 27-52 (161)
318 TIGR01360 aden_kin_iso1 adenyl 38.5 14 0.00029 34.1 0.8 16 193-208 5-20 (188)
319 cd01983 Fer4_NifH The Fer4_Nif 38.5 13 0.00029 29.4 0.7 15 194-208 2-16 (99)
320 KOG0729 26S proteasome regulat 38.5 15 0.00033 36.8 1.2 21 188-208 206-228 (435)
321 KOG1803 DNA helicase [Replicat 38.4 15 0.00032 40.8 1.1 17 192-208 202-218 (649)
322 PTZ00110 helicase; Provisional 38.3 19 0.00042 39.8 2.1 25 182-208 160-184 (545)
323 PRK14532 adenylate kinase; Pro 38.3 15 0.00032 34.2 1.0 16 193-208 2-17 (188)
324 COG3839 MalK ABC-type sugar tr 38.3 13 0.00029 38.5 0.8 15 194-208 32-46 (338)
325 cd01394 radB RadB. The archaea 38.2 23 0.00051 33.7 2.4 29 180-208 5-36 (218)
326 PRK06851 hypothetical protein; 38.2 17 0.00037 38.2 1.6 27 182-208 21-47 (367)
327 cd00071 GMPK Guanosine monopho 38.1 13 0.00027 33.1 0.5 15 194-208 2-16 (137)
328 KOG0735 AAA+-type ATPase [Post 37.9 28 0.0006 39.6 3.1 19 190-208 700-718 (952)
329 TIGR02397 dnaX_nterm DNA polym 37.8 24 0.00051 36.3 2.5 41 160-208 12-53 (355)
330 PRK14729 miaA tRNA delta(2)-is 37.8 15 0.00033 37.5 1.1 16 193-208 6-21 (300)
331 COG1122 CbiO ABC-type cobalt t 37.7 14 0.0003 36.4 0.7 17 192-208 31-47 (235)
332 PRK10820 DNA-binding transcrip 37.7 17 0.00037 40.0 1.5 45 158-208 200-244 (520)
333 CHL00195 ycf46 Ycf46; Provisio 37.6 13 0.00028 40.7 0.6 18 191-208 259-276 (489)
334 PTZ00014 myosin-A; Provisional 37.6 28 0.0006 40.6 3.2 34 174-208 166-200 (821)
335 PRK09111 DNA polymerase III su 37.5 19 0.00042 40.4 1.9 41 160-208 22-63 (598)
336 TIGR02173 cyt_kin_arch cytidyl 37.4 14 0.00029 33.5 0.6 16 193-208 2-17 (171)
337 PRK14970 DNA polymerase III su 37.1 24 0.00053 36.7 2.5 41 160-208 15-56 (367)
338 cd01124 KaiC KaiC is a circadi 37.1 15 0.00032 33.8 0.8 15 194-208 2-16 (187)
339 PRK06762 hypothetical protein; 36.9 16 0.00034 33.2 0.9 16 193-208 4-19 (166)
340 PRK15429 formate hydrogenlyase 36.7 18 0.00038 41.3 1.5 21 188-208 396-416 (686)
341 PF01745 IPT: Isopentenyl tran 36.6 15 0.00033 35.8 0.8 15 194-208 4-18 (233)
342 PRK14962 DNA polymerase III su 36.5 25 0.00053 38.3 2.5 41 160-208 12-53 (472)
343 PF01926 MMR_HSR1: 50S ribosom 36.3 13 0.00029 31.4 0.4 15 194-208 2-16 (116)
344 PRK14960 DNA polymerase III su 36.2 22 0.00048 40.3 2.1 41 160-208 13-54 (702)
345 TIGR03878 thermo_KaiC_2 KaiC d 36.1 21 0.00046 35.4 1.8 17 191-207 36-52 (259)
346 TIGR00929 VirB4_CagE type IV s 35.8 15 0.00032 42.4 0.7 18 191-208 434-451 (785)
347 PRK14951 DNA polymerase III su 35.8 22 0.00047 40.1 2.0 41 160-208 14-55 (618)
348 PRK04040 adenylate kinase; Pro 35.8 15 0.00033 34.6 0.7 16 193-208 4-19 (188)
349 PRK14958 DNA polymerase III su 35.8 22 0.00047 39.1 2.0 41 160-208 14-55 (509)
350 PRK03839 putative kinase; Prov 35.7 15 0.00033 33.9 0.6 15 194-208 3-17 (180)
351 TIGR01425 SRP54_euk signal rec 35.7 33 0.00071 36.9 3.2 18 191-208 100-117 (429)
352 cd03240 ABC_Rad50 The catalyti 35.6 16 0.00034 34.9 0.8 16 193-208 24-39 (204)
353 PRK15424 propionate catabolism 35.5 21 0.00046 39.5 1.8 22 187-208 238-259 (538)
354 PF14532 Sigma54_activ_2: Sigm 35.5 17 0.00036 32.1 0.9 21 188-208 18-38 (138)
355 COG0467 RAD55 RecA-superfamily 35.4 24 0.00052 34.8 2.0 25 183-207 12-39 (260)
356 TIGR00580 mfd transcription-re 35.4 23 0.00051 41.8 2.2 30 179-208 460-489 (926)
357 cd03279 ABC_sbcCD SbcCD and ot 35.4 17 0.00036 34.8 0.9 18 191-208 28-45 (213)
358 KOG2655 Septin family protein 35.4 18 0.00039 37.9 1.2 24 185-208 15-38 (366)
359 KOG0390 DNA repair protein, SN 35.3 21 0.00046 41.0 1.8 40 169-209 241-281 (776)
360 TIGR00382 clpX endopeptidase C 35.3 16 0.00035 39.0 0.8 17 192-208 117-133 (413)
361 TIGR00235 udk uridine kinase. 35.3 16 0.00034 34.7 0.7 17 192-208 7-23 (207)
362 COG0396 sufC Cysteine desulfur 35.2 23 0.00049 34.9 1.7 28 185-212 18-54 (251)
363 KOG0727 26S proteasome regulat 35.2 17 0.00037 36.2 0.9 72 160-231 153-246 (408)
364 PRK14527 adenylate kinase; Pro 35.1 18 0.00038 33.9 1.0 17 192-208 7-23 (191)
365 PF02534 T4SS-DNA_transf: Type 35.0 23 0.0005 38.1 2.0 17 192-208 45-61 (469)
366 PRK05896 DNA polymerase III su 34.9 22 0.00048 39.8 1.9 41 160-208 14-55 (605)
367 PRK14530 adenylate kinase; Pro 34.9 16 0.00035 35.0 0.7 16 193-208 5-20 (215)
368 KOG2373 Predicted mitochondria 34.8 25 0.00055 36.6 2.1 27 181-208 261-290 (514)
369 PF00025 Arf: ADP-ribosylation 34.6 22 0.00047 32.8 1.5 28 181-208 3-31 (175)
370 PRK13889 conjugal transfer rel 34.5 22 0.00049 42.2 1.9 26 182-208 354-379 (988)
371 PRK04296 thymidine kinase; Pro 34.5 13 0.00029 34.9 0.1 18 193-210 4-21 (190)
372 KOG1514 Origin recognition com 34.5 27 0.00059 39.5 2.4 82 336-435 538-628 (767)
373 PF02367 UPF0079: Uncharacteri 34.5 30 0.00066 30.5 2.3 19 192-210 16-34 (123)
374 COG1131 CcmA ABC-type multidru 34.4 16 0.00034 37.1 0.6 13 196-208 36-48 (293)
375 TIGR01351 adk adenylate kinase 34.4 17 0.00036 34.7 0.7 34 194-227 2-35 (210)
376 PRK05342 clpX ATP-dependent pr 34.4 17 0.00038 38.8 0.9 18 191-208 108-125 (412)
377 PRK07003 DNA polymerase III su 34.4 23 0.0005 40.8 1.9 41 160-208 14-55 (830)
378 PF03668 ATP_bind_2: P-loop AT 34.4 36 0.00078 34.5 3.1 16 193-208 3-18 (284)
379 cd02019 NK Nucleoside/nucleoti 34.3 16 0.00035 28.3 0.5 15 194-208 2-16 (69)
380 TIGR02768 TraA_Ti Ti-type conj 34.1 23 0.0005 40.8 1.9 27 183-210 361-387 (744)
381 TIGR03117 cas_csf4 CRISPR-asso 34.1 26 0.00056 39.6 2.2 33 170-208 1-33 (636)
382 KOG0652 26S proteasome regulat 34.1 18 0.00039 36.3 0.9 16 193-208 207-222 (424)
383 TIGR02329 propionate_PrpR prop 34.1 22 0.00047 39.3 1.6 44 159-208 209-252 (526)
384 KOG1532 GTPase XAB1, interacts 34.0 29 0.00063 35.1 2.3 28 190-227 18-45 (366)
385 TIGR02236 recomb_radA DNA repa 34.0 24 0.00053 35.8 1.9 30 179-208 80-112 (310)
386 KOG0745 Putative ATP-dependent 33.9 19 0.0004 38.7 1.0 17 192-208 227-243 (564)
387 PRK12727 flagellar biosynthesi 33.9 18 0.00038 40.0 0.9 17 192-208 351-367 (559)
388 COG0563 Adk Adenylate kinase a 33.7 18 0.0004 33.9 0.8 15 194-208 3-17 (178)
389 PRK14955 DNA polymerase III su 33.3 25 0.00054 37.2 1.9 40 160-208 14-55 (397)
390 TIGR01243 CDC48 AAA family ATP 33.3 23 0.0005 40.7 1.7 17 192-208 488-504 (733)
391 cd03272 ABC_SMC3_euk Eukaryoti 33.3 19 0.00041 34.9 0.9 16 193-208 25-40 (243)
392 COG0464 SpoVK ATPases of the A 33.2 22 0.00047 38.7 1.4 20 189-208 274-293 (494)
393 cd02027 APSK Adenosine 5'-phos 33.2 17 0.00036 32.8 0.4 15 194-208 2-16 (149)
394 cd01853 Toc34_like Toc34-like 33.1 20 0.00043 35.6 1.0 39 167-208 10-48 (249)
395 KOG0987 DNA helicase PIF1/RRM3 32.9 35 0.00076 37.8 3.0 35 169-208 120-154 (540)
396 PRK12323 DNA polymerase III su 32.7 25 0.00055 39.8 1.8 41 160-208 14-55 (700)
397 TIGR01650 PD_CobS cobaltochela 32.7 24 0.00052 36.5 1.6 18 191-208 64-81 (327)
398 PRK13873 conjugal transfer ATP 32.7 16 0.00035 42.5 0.3 26 67-92 244-269 (811)
399 PRK11545 gntK gluconate kinase 32.6 14 0.00031 33.9 -0.1 12 197-208 1-12 (163)
400 PRK09401 reverse gyrase; Revie 32.6 26 0.00056 42.6 2.0 24 182-207 88-111 (1176)
401 PRK09825 idnK D-gluconate kina 32.5 19 0.00041 33.6 0.7 16 193-208 5-20 (176)
402 PHA02774 E1; Provisional 32.3 28 0.0006 38.8 2.0 26 183-208 424-451 (613)
403 TIGR03880 KaiC_arch_3 KaiC dom 32.2 30 0.00065 33.2 2.1 27 182-208 4-33 (224)
404 PRK11784 tRNA 2-selenouridine 32.0 27 0.00058 36.4 1.8 33 175-208 126-158 (345)
405 PRK13853 type IV secretion sys 32.0 18 0.00039 42.0 0.5 18 191-208 426-443 (789)
406 TIGR03346 chaperone_ClpB ATP-d 31.8 37 0.0008 39.8 3.1 18 191-208 595-612 (852)
407 PRK06851 hypothetical protein; 31.7 28 0.0006 36.7 1.9 27 182-208 205-231 (367)
408 cd01858 NGP_1 NGP-1. Autoanti 31.6 29 0.00063 31.2 1.8 20 189-208 100-119 (157)
409 KOG1923 Rac1 GTPase effector F 31.6 1E+02 0.0022 35.2 6.2 9 5-13 283-291 (830)
410 PRK13721 conjugal transfer ATP 31.5 19 0.00041 42.2 0.6 18 191-208 449-466 (844)
411 PRK05057 aroK shikimate kinase 31.5 20 0.00044 33.1 0.8 17 192-208 5-21 (172)
412 TIGR02688 conserved hypothetic 31.5 19 0.00041 38.7 0.6 42 187-231 207-252 (449)
413 TIGR00763 lon ATP-dependent pr 31.4 24 0.00052 40.9 1.5 16 193-208 349-364 (775)
414 PRK05480 uridine/cytidine kina 31.4 24 0.00052 33.4 1.3 17 192-208 7-23 (209)
415 TIGR02655 circ_KaiC circadian 31.4 29 0.00064 37.8 2.1 27 181-207 8-37 (484)
416 PRK09302 circadian clock prote 31.3 29 0.00063 38.0 2.0 30 179-208 16-48 (509)
417 TIGR02238 recomb_DMC1 meiotic 31.2 38 0.00083 34.7 2.8 31 178-208 80-113 (313)
418 PTZ00301 uridine kinase; Provi 31.1 16 0.00035 35.2 0.0 14 195-208 7-20 (210)
419 PRK14965 DNA polymerase III su 31.0 30 0.00065 38.7 2.1 41 160-208 14-55 (576)
420 TIGR00390 hslU ATP-dependent p 30.9 20 0.00044 38.4 0.7 17 192-208 48-64 (441)
421 PRK00279 adk adenylate kinase; 30.8 21 0.00046 34.1 0.8 15 193-207 2-16 (215)
422 TIGR01074 rep ATP-dependent DN 30.7 22 0.00048 40.2 1.0 20 191-210 14-33 (664)
423 TIGR00959 ffh signal recogniti 30.7 25 0.00055 37.8 1.4 18 191-208 99-116 (428)
424 PRK10689 transcription-repair 30.6 35 0.00076 41.3 2.7 38 167-208 601-638 (1147)
425 cd03115 SRP The signal recogni 30.6 22 0.00047 32.5 0.8 15 194-208 3-17 (173)
426 TIGR00176 mobB molybdopterin-g 30.6 20 0.00043 32.8 0.5 14 195-208 3-16 (155)
427 PRK06731 flhF flagellar biosyn 30.6 21 0.00044 36.0 0.6 17 192-208 76-92 (270)
428 TIGR00678 holB DNA polymerase 30.5 34 0.00075 31.7 2.2 24 185-208 7-31 (188)
429 TIGR00554 panK_bact pantothena 30.4 36 0.00079 34.6 2.4 26 192-228 63-88 (290)
430 TIGR02012 tigrfam_recA protein 30.3 35 0.00076 35.2 2.3 31 178-208 38-72 (321)
431 TIGR02767 TraG-Ti Ti-type conj 30.3 22 0.00048 40.1 0.9 17 192-208 212-228 (623)
432 KOG0742 AAA+-type ATPase [Post 30.2 24 0.00052 37.6 1.1 13 193-205 386-398 (630)
433 PHA02530 pseT polynucleotide k 30.2 23 0.00049 35.6 0.9 16 193-208 4-19 (300)
434 TIGR01447 recD exodeoxyribonuc 30.1 28 0.0006 39.0 1.6 24 183-208 154-177 (586)
435 TIGR01587 cas3_core CRISPR-ass 30.1 19 0.00042 37.1 0.4 15 194-208 2-16 (358)
436 COG0324 MiaA tRNA delta(2)-iso 30.1 25 0.00053 36.1 1.1 16 193-208 5-20 (308)
437 TIGR01054 rgy reverse gyrase. 30.0 30 0.00064 42.1 2.0 25 181-207 85-109 (1171)
438 TIGR02759 TraD_Ftype type IV c 30.0 20 0.00044 39.9 0.5 16 193-208 178-193 (566)
439 PRK02496 adk adenylate kinase; 29.8 23 0.00049 32.8 0.7 15 194-208 4-18 (184)
440 cd00227 CPT Chloramphenicol (C 29.7 24 0.00052 32.5 0.9 16 193-208 4-19 (175)
441 PRK06645 DNA polymerase III su 29.6 33 0.00071 37.7 2.1 41 160-208 19-60 (507)
442 PRK00091 miaA tRNA delta(2)-is 29.5 23 0.0005 36.3 0.8 16 193-208 6-21 (307)
443 TIGR01970 DEAH_box_HrpB ATP-de 29.5 31 0.00066 40.3 1.9 27 180-208 8-34 (819)
444 PLN02200 adenylate kinase fami 29.4 25 0.00053 34.5 1.0 36 192-227 44-79 (234)
445 PRK05416 glmZ(sRNA)-inactivati 29.3 22 0.00049 36.0 0.7 17 193-209 8-24 (288)
446 PLN03187 meiotic recombination 29.2 39 0.00085 35.2 2.5 31 178-208 110-143 (344)
447 cd01876 YihA_EngB The YihA (En 29.2 21 0.00046 31.3 0.4 15 194-208 2-16 (170)
448 PF00005 ABC_tran: ABC transpo 29.1 23 0.00049 30.8 0.6 17 192-208 12-28 (137)
449 PRK13891 conjugal transfer pro 29.1 24 0.00052 41.4 1.0 26 67-92 291-316 (852)
450 cd04163 Era Era subfamily. Er 29.0 24 0.00053 30.8 0.8 16 193-208 5-20 (168)
451 TIGR02442 Cob-chelat-sub cobal 29.0 43 0.00093 37.9 2.9 42 159-208 1-42 (633)
452 TIGR00604 rad3 DNA repair heli 28.9 42 0.00091 38.4 2.9 44 157-209 4-47 (705)
453 PRK14528 adenylate kinase; Pro 28.6 24 0.00053 33.0 0.8 16 193-208 3-18 (186)
454 PRK14738 gmk guanylate kinase; 28.6 28 0.0006 33.2 1.2 18 191-208 13-30 (206)
455 PRK04301 radA DNA repair and r 28.6 41 0.0009 34.3 2.5 30 179-208 87-119 (317)
456 KOG1534 Putative transcription 28.6 31 0.00068 33.6 1.5 15 193-207 5-19 (273)
457 COG1118 CysA ABC-type sulfate/ 28.6 25 0.00055 36.1 0.9 16 193-208 30-45 (345)
458 TIGR02655 circ_KaiC circadian 28.4 61 0.0013 35.3 3.9 30 179-208 248-280 (484)
459 TIGR00174 miaA tRNA isopenteny 28.4 25 0.00055 35.7 0.9 15 194-208 2-16 (287)
460 cd02028 UMPK_like Uridine mono 28.4 24 0.00052 32.9 0.6 15 194-208 2-16 (179)
461 PRK13531 regulatory ATPase Rav 28.3 35 0.00077 37.3 2.0 28 179-208 29-56 (498)
462 PF04665 Pox_A32: Poxvirus A32 28.2 24 0.00051 34.9 0.6 15 194-208 16-30 (241)
463 cd00983 recA RecA is a bacter 27.8 43 0.00092 34.7 2.4 32 177-208 37-72 (325)
464 PRK13830 conjugal transfer pro 27.7 22 0.00047 41.5 0.3 19 190-208 455-473 (818)
465 PRK01184 hypothetical protein; 27.6 27 0.00059 32.2 0.9 15 193-207 3-17 (184)
466 TIGR03574 selen_PSTK L-seryl-t 27.6 25 0.00053 34.5 0.6 15 194-208 2-16 (249)
467 PF13481 AAA_25: AAA domain; P 27.6 23 0.00049 32.8 0.3 26 183-208 21-49 (193)
468 PRK08451 DNA polymerase III su 27.5 37 0.0008 37.6 2.0 41 160-208 12-53 (535)
469 PF09439 SRPRB: Signal recogni 27.4 29 0.00062 32.8 1.0 17 192-208 4-20 (181)
470 PRK11131 ATP-dependent RNA hel 27.3 26 0.00056 42.7 0.8 22 186-208 85-106 (1294)
471 PRK05541 adenylylsulfate kinas 27.3 28 0.0006 32.0 0.9 17 192-208 8-24 (176)
472 PRK15483 type III restriction- 27.1 18 0.0004 42.6 -0.5 14 198-211 66-79 (986)
473 TIGR02639 ClpA ATP-dependent C 27.0 33 0.00071 39.5 1.6 42 161-210 181-222 (731)
474 cd03238 ABC_UvrA The excision 27.0 25 0.00054 32.9 0.5 15 194-208 24-38 (176)
475 TIGR01547 phage_term_2 phage t 27.0 26 0.00056 36.9 0.7 17 193-209 3-19 (396)
476 TIGR03783 Bac_Flav_CT_G Bacter 27.0 24 0.00052 41.2 0.5 18 191-208 438-455 (829)
477 COG1198 PriA Primosomal protei 27.0 34 0.00073 39.3 1.6 57 168-230 200-270 (730)
478 PF05707 Zot: Zonular occluden 27.0 25 0.00054 33.1 0.5 15 194-208 3-17 (193)
479 cd03278 ABC_SMC_barmotin Barmo 26.9 25 0.00055 33.3 0.5 16 193-208 24-39 (197)
480 cd04164 trmE TrmE (MnmE, ThdF, 26.9 26 0.00056 30.5 0.5 16 193-208 3-18 (157)
481 PF05872 DUF853: Bacterial pro 26.8 25 0.00055 37.9 0.6 15 195-209 23-37 (502)
482 PRK13822 conjugal transfer cou 26.7 28 0.0006 39.5 0.9 17 192-208 225-241 (641)
483 PLN02796 D-glycerate 3-kinase 26.6 20 0.00043 37.4 -0.2 15 194-208 103-117 (347)
484 PRK14952 DNA polymerase III su 26.6 42 0.0009 37.6 2.2 41 160-208 11-52 (584)
485 COG2884 FtsE Predicted ATPase 26.5 26 0.00056 33.7 0.5 16 193-208 30-45 (223)
486 PRK10751 molybdopterin-guanine 26.5 29 0.00062 32.5 0.8 14 195-208 10-23 (173)
487 cd01918 HprK_C HprK/P, the bif 26.4 33 0.00072 31.3 1.2 19 190-208 13-31 (149)
488 PRK11608 pspF phage shock prot 26.3 36 0.00079 35.0 1.6 42 161-208 5-46 (326)
489 PRK04182 cytidylate kinase; Pr 26.3 30 0.00065 31.4 0.9 16 193-208 2-17 (180)
490 PLN02165 adenylate isopentenyl 26.3 32 0.0007 35.7 1.2 17 192-208 44-60 (334)
491 KOG0726 26S proteasome regulat 26.2 29 0.00063 35.4 0.8 72 160-231 183-276 (440)
492 TIGR00595 priA primosomal prot 26.1 20 0.00042 39.4 -0.5 14 196-209 2-15 (505)
493 KOG0924 mRNA splicing factor A 26.0 33 0.00072 38.8 1.3 20 189-208 369-388 (1042)
494 PRK05563 DNA polymerase III su 26.0 51 0.0011 36.7 2.8 41 160-208 14-55 (559)
495 PRK09354 recA recombinase A; P 25.9 48 0.001 34.6 2.4 32 177-208 42-77 (349)
496 cd00544 CobU Adenosylcobinamid 25.9 30 0.00066 32.1 0.9 14 194-207 2-15 (169)
497 cd01121 Sms Sms (bacterial rad 25.9 39 0.00085 35.6 1.8 31 179-209 67-100 (372)
498 PRK08533 flagellar accessory p 25.9 32 0.00069 33.5 1.1 18 191-208 24-41 (230)
499 KOG0330 ATP-dependent RNA heli 25.9 35 0.00075 36.1 1.3 25 182-208 91-115 (476)
500 CHL00095 clpC Clp protease ATP 25.8 55 0.0012 38.3 3.1 17 192-208 540-556 (821)
No 1
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-85 Score=722.86 Aligned_cols=331 Identities=27% Similarity=0.405 Sum_probs=296.5
Q ss_pred CCCCCCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcC-CceEEecCCccccc
Q 046715 71 ATSSPSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVND-HNSVTLSPPLALQT 149 (501)
Q Consensus 71 ~~~~~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~v~l~~p~~~~~ 149 (501)
......-||+|+|||||++..| .......+|.+++ ++.|.+...-...
T Consensus 43 ~~~e~~~NIqVivRcRp~n~~E------------------------------~~~~s~~VVs~~~~~kEV~v~~~~~sk- 91 (1041)
T KOG0243|consen 43 DHKEKEVNIQVIVRCRPRNDRE------------------------------RKSKSSVVVSCDGIRKEVAVRQTIASK- 91 (1041)
T ss_pred CCCCCCCceEEEEEeCCCCchh------------------------------hhcCCCeEEecCCCcceEEEecccccc-
Confidence 3444568999999999999888 2445666777777 6668887651111
Q ss_pred cccccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccccc--------CCCCCCCchhH
Q 046715 150 SKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG--------CPREPGMVPIA 221 (501)
Q Consensus 150 ~~~~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G--------~~~~~GIipr~ 221 (501)
. ..+.|+||+||+|++.|.+||+.+|.|+|+.|+.|||||||||||||+||||||.| .+.+.|||||+
T Consensus 92 --~--~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRa 167 (1041)
T KOG0243|consen 92 --Q--IDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRA 167 (1041)
T ss_pred --c--ccceeecceeeCcchhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHH
Confidence 1 23569999999999999999999999999999999999999999999999999999 56789999999
Q ss_pred HHHHHhhcccccCCCccceEEEEEEEEeeccCCCcceeccCCCCcc--------------cccccccccCceEEEecCHH
Q 046715 222 LKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVD--------------LCMQQSTIKGLQEIIISDAA 287 (501)
Q Consensus 222 ~~~LF~~~~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~--------------~~~~~~~v~~l~~~~v~s~~ 287 (501)
+.+||+.+.. .+..|+|+|||+|+||| .|+|||++... ...+++.|+||.++.|.++.
T Consensus 168 l~~IFd~Le~---~~~EYsvKVSfLELYNE-----El~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ 239 (1041)
T KOG0243|consen 168 LRQIFDTLEA---QGAEYSVKVSFLELYNE-----ELTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNAD 239 (1041)
T ss_pred HHHHHHHHHh---cCCeEEEEEEehhhhhH-----HHHHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchh
Confidence 9999999887 45899999999999998 99999976432 23356789999999999999
Q ss_pred HHHHHHHHhhccccccccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHH
Q 046715 288 QAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFI 367 (501)
Q Consensus 288 e~~~ll~~g~~~R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~I 367 (501)
|++.+|.+|.++|++++|.||..|||||+||+|+|........+..-.+.|+|+||||||||-+.++|+.+.|.+|++.|
T Consensus 240 ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~I 319 (1041)
T KOG0243|consen 240 EIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEI 319 (1041)
T ss_pred HHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhhHhhcccceeeccccccccccccccchhHHhhhh
Confidence 99999999999999999999999999999999999887666555556788999999999999999999999999999999
Q ss_pred hhhHHHHHHHhc----CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCch
Q 046715 368 NNTSMVFGLCLR----KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDSS 443 (501)
Q Consensus 368 N~SL~~L~~vi~----~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~~ 443 (501)
|+||++||+||+ ...|||||+|||||||||||||.++|+|||||||+..+++||++||.||.|||+|+|+|.+|+.
T Consensus 320 NqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQk 399 (1041)
T KOG0243|consen 320 NQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQK 399 (1041)
T ss_pred hHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchH
Confidence 999999999998 7899999999999999999999999999999999999999999999999999999999999976
Q ss_pred h
Q 046715 444 N 444 (501)
Q Consensus 444 ~ 444 (501)
-
T Consensus 400 l 400 (1041)
T KOG0243|consen 400 L 400 (1041)
T ss_pred H
Confidence 3
No 2
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.1e-87 Score=705.68 Aligned_cols=344 Identities=30% Similarity=0.457 Sum_probs=302.4
Q ss_pred CCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcC-CceEEecCCccccccccc
Q 046715 75 PSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVND-HNSVTLSPPLALQTSKRI 153 (501)
Q Consensus 75 ~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~v~l~~p~~~~~~~~~ 153 (501)
...+++|++|+||+...+ .......++.++. ...+.+.+|......
T Consensus 3 ~~~~v~vvvr~rPl~~~~------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 49 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAE------------------------------RSELLKSILSVDPAHGRVSLKNPVAGIEG--- 49 (574)
T ss_pred cccceeEEEeecCCCchh------------------------------hhhhhccccccccccceeeecCCcccccC---
Confidence 468999999999998755 2455566666665 667777776543322
Q ss_pred cceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccC-CCCCCCchhHHHHHHhhcccc
Q 046715 154 KSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGC-PREPGMVPIALKRIFKGTTKI 232 (501)
Q Consensus 154 ~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~-~~~~GIipr~~~~LF~~~~~~ 232 (501)
..+.|+||+||+++++|++||+.++.|+|++|++|||+||||||||||||||||+|+ ++..|||||++++||..|+..
T Consensus 50 -~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~ 128 (574)
T KOG4280|consen 50 -KPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDER 128 (574)
T ss_pred -CCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhc
Confidence 123499999999999999999999999999999999999999999999999999999 667799999999999999984
Q ss_pred cCCCccceEEEEEEEEeeccCCCcceeccCCCCc--ccc-----cccccccCceEEEecCHHHHHHHHHHhhcccccccc
Q 046715 233 RSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV--DLC-----MQQSTIKGLQEIIISDAAQAESLIARAMLKRATAMT 305 (501)
Q Consensus 233 ~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~--~~~-----~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t 305 (501)
+.. ..|.|+|||+||||| .|+|||.+.. .+. ..|+||+||+++.|.+++|++.+|..|.++|.+++|
T Consensus 129 ~~~-~~f~vrvS~lEiYnE-----~i~DLL~~~~~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat 202 (574)
T KOG4280|consen 129 KEK-TRFLVRVSYLEIYNE-----SIRDLLSPVNPKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGAT 202 (574)
T ss_pred ccc-ceEEEEeehHHHHhH-----HHHHHhCccCcCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhc
Confidence 433 389999999999998 9999998754 333 357899999999999999999999999999999999
Q ss_pred CCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc-----C
Q 046715 306 NSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR-----K 380 (501)
Q Consensus 306 ~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~-----~ 380 (501)
.||..|||||+||+|+|++.....++....+.|+|+|||||||||..+++++|++++|+.+||+||++||+||. +
T Consensus 203 ~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~ 282 (574)
T KOG4280|consen 203 SMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGS 282 (574)
T ss_pred cCCcccccceEEEEEEEEeecccCCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccc
Confidence 99999999999999999984444556667888999999999999999999999999999999999999999997 4
Q ss_pred CCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCchh----hhhhhhhccchh
Q 046715 381 PLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDSSN----FLCSKRQLPSLS 456 (501)
Q Consensus 381 ~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~~~----~~~~~~~~~~l~ 456 (501)
..||||||||||+||||||||||+|+|||||+|+..+++||++||+||+|||.|+|++++|.+. +..++++++.|+
T Consensus 283 ~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk 362 (574)
T KOG4280|consen 283 KTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLK 362 (574)
T ss_pred cCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHH
Confidence 4499999999999999999999999999999999999999999999999999999999988763 455666676664
Q ss_pred hH
Q 046715 457 GK 458 (501)
Q Consensus 457 ~~ 458 (501)
.+
T Consensus 363 ~~ 364 (574)
T KOG4280|consen 363 KE 364 (574)
T ss_pred Hh
Confidence 43
No 3
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.8e-86 Score=710.90 Aligned_cols=335 Identities=26% Similarity=0.406 Sum_probs=299.3
Q ss_pred CCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCccccccccccc
Q 046715 76 SETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTSKRIKS 155 (501)
Q Consensus 76 ~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~~~~~~ 155 (501)
..+|+|.||+||++..| ......||....|+++++..|......
T Consensus 3 ~ssv~VAVRVRPfn~rE-------------------------------~s~~~k~Vvqm~gn~ttii~~~~~k~~----- 46 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNARE-------------------------------KSRDAKCVVQMQGNTTTIINPKGSKDA----- 46 (1221)
T ss_pred CCceEEEEEeccchhhh-------------------------------hhcccceEEEecCCceeeecCCCcccC-----
Confidence 46899999999999988 333566666666677777766543322
Q ss_pred eeeecccccCCCC-------CchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCC--CCCCCchhHHHHHH
Q 046715 156 EVYQGFSYVFSAD-------SSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCP--REPGMVPIALKRIF 226 (501)
Q Consensus 156 ~~~f~FD~Vf~~~-------~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~--~~~GIipr~~~~LF 226 (501)
..|+||+.||.. ++|..||+.++.++++++|+|||+||||||||||||||||+|-. +++|||||+|++||
T Consensus 47 -~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF 125 (1221)
T KOG0245|consen 47 -PKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELF 125 (1221)
T ss_pred -CceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHH
Confidence 339999999865 68999999999999999999999999999999999999999987 89999999999999
Q ss_pred hhcccccCCCccceEEEEEEEEeeccCCCcceeccCC-CC--ccccc-----ccccccCceEEEecCHHHHHHHHHHhhc
Q 046715 227 KGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLP-DG--VDLCM-----QQSTIKGLQEIIISDAAQAESLIARAML 298 (501)
Q Consensus 227 ~~~~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~-~~--~~~~~-----~~~~v~~l~~~~v~s~~e~~~ll~~g~~ 298 (501)
.++...+.++..|.|.|||+||||| +|+|||+ +. ..+.+ .|.||++|+.+.|+|+.|+..+|+.|++
T Consensus 126 ~ri~~nq~~~~sy~VevSymEIYcE-----rVrDLL~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNk 200 (1221)
T KOG0245|consen 126 SRIADNQSQQMSYSVEVSYMEIYCE-----RVRDLLNAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNK 200 (1221)
T ss_pred HHHhhcccccceEEEEEeehhHHHH-----HHHHHhhCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcch
Confidence 9999988889999999999999998 9999997 43 33444 4789999999999999999999999999
Q ss_pred cccccccCCCCCCCCceeEEEEEEeeeeccCCCc-cccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHH
Q 046715 299 KRATAMTNSNNQSSRSQCIINLRCAANELSRGDG-VHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLC 377 (501)
Q Consensus 299 ~R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~-~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~v 377 (501)
.|++++|+||+.|||||+||+|.+.|.......+ .+.++|+|+|||||||||+..+|+.|+|++||.+||+||.+||+|
T Consensus 201 qRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkV 280 (1221)
T KOG0245|consen 201 QRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKV 280 (1221)
T ss_pred hhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHH
Confidence 9999999999999999999999999987766553 467789999999999999999999999999999999999999999
Q ss_pred hc-----------CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCchhhh
Q 046715 378 LR-----------KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDSSNFL 446 (501)
Q Consensus 378 i~-----------~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~~~~~ 446 (501)
|. +..+||||||.||+||++.||||+||.|||+|||++.||+|||+|||||.|||.|+|++++|.+.-.
T Consensus 281 ISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpna 360 (1221)
T KOG0245|consen 281 ISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNA 360 (1221)
T ss_pred HHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccH
Confidence 97 3458999999999999999999999999999999999999999999999999999999999988544
Q ss_pred hhhhhc
Q 046715 447 CSKRQL 452 (501)
Q Consensus 447 ~~~~~~ 452 (501)
.+.|+|
T Consensus 361 KLIREL 366 (1221)
T KOG0245|consen 361 KLIREL 366 (1221)
T ss_pred HHHHHH
Confidence 444443
No 4
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=1.8e-81 Score=695.34 Aligned_cols=338 Identities=26% Similarity=0.380 Sum_probs=288.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCccccccccccc
Q 046715 76 SETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTSKRIKS 155 (501)
Q Consensus 76 ~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~~~~~~ 155 (501)
.++|+|||||||+...| .+ ..++...+++.+.+..
T Consensus 97 ds~VkV~VRVRPl~~~E--------------------------------~g-~~iV~~~s~dsl~I~~------------ 131 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGE--------------------------------EG-EMIVQKMSNDSLTING------------ 131 (1320)
T ss_pred CCCeEEEEEcCCCCCcc--------------------------------CC-CeeEEEcCCCeEEEeC------------
Confidence 47999999999998755 11 2233444556666532
Q ss_pred eeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCC----------CCCCCchhHHHHH
Q 046715 156 EVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCP----------REPGMVPIALKRI 225 (501)
Q Consensus 156 ~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~----------~~~GIipr~~~~L 225 (501)
..|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|+. .++|||||++++|
T Consensus 132 -qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledL 210 (1320)
T PLN03188 132 -QTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERL 210 (1320)
T ss_pred -cEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHH
Confidence 35999999999999999999999999999999999999999999999999999963 5689999999999
Q ss_pred Hhhccccc----CCCccceEEEEEEEEeeccCCCcceeccCCCCc-cccc-----ccccccCceEEEecCHHHHHHHHHH
Q 046715 226 FKGTTKIR----SSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV-DLCM-----QQSTIKGLQEIIISDAAQAESLIAR 295 (501)
Q Consensus 226 F~~~~~~~----~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~-~~~~-----~~~~v~~l~~~~v~s~~e~~~ll~~ 295 (501)
|+.+...+ .....|.|+|||+||||| +|+|||.+.. .+.+ .+.+|.||+++.|.|++|++.+|..
T Consensus 211 F~~I~e~q~k~~d~~~~y~V~vSyLEIYNE-----kI~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~ 285 (1320)
T PLN03188 211 FARINEEQIKHADRQLKYQCRCSFLEIYNE-----QITDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIK 285 (1320)
T ss_pred HHHHHhhhhhccccccceEEEEEEEeeecC-----cceeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHH
Confidence 99986522 235678999999999998 9999997653 3444 3578999999999999999999999
Q ss_pred hhccccccccCCCCCCCCceeEEEEEEeeeeccCCC-ccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHH
Q 046715 296 AMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGD-GVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVF 374 (501)
Q Consensus 296 g~~~R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~-~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L 374 (501)
|..+|++++|.+|..|||||+||+|+|.+......+ ......|+|+|||||||||...+++.|.+++|+++||+||++|
T Consensus 286 G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaL 365 (1320)
T PLN03188 286 GLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQL 365 (1320)
T ss_pred HhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999875433222 2234569999999999999999999999999999999999999
Q ss_pred HHHhc---------CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCch--
Q 046715 375 GLCLR---------KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDSS-- 443 (501)
Q Consensus 375 ~~vi~---------~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~~-- 443 (501)
|+||. +..||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+||++|+|++++|..
T Consensus 366 GnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~ 445 (1320)
T PLN03188 366 GNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQ 445 (1320)
T ss_pred HHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchh
Confidence 99996 3469999999999999999999999999999999999999999999999999999999988854
Q ss_pred -hhhhhhhhccchhhHHHHHHHHh
Q 046715 444 -NFLCSKRQLPSLSGKDQLKRVKL 466 (501)
Q Consensus 444 -~~~~~~~~~~~l~~~~~l~~~~~ 466 (501)
.+..++..++.| +.+|.+.+.
T Consensus 446 ~~vn~LrelIr~L--k~EL~rLK~ 467 (1320)
T PLN03188 446 DDVNFLREVIRQL--RDELQRVKA 467 (1320)
T ss_pred hhHHHHHHHHHHH--HHHHHHHHH
Confidence 334455666666 444444444
No 5
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=7.4e-80 Score=633.88 Aligned_cols=321 Identities=28% Similarity=0.451 Sum_probs=285.7
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCccccc----cccc
Q 046715 78 TLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQT----SKRI 153 (501)
Q Consensus 78 ~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~----~~~~ 153 (501)
+|+|||||||+...| ...+...|+.+.+++.+++.++..... ....
T Consensus 1 ~i~V~vRvRP~~~~E------------------------------~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~ 50 (338)
T cd01370 1 SLTVAVRVRPFNEKE------------------------------KQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARR 50 (338)
T ss_pred CeEEEEEcCCCChhh------------------------------hhcCCceEEEEcCCCEEEEcCCcccccccchhccc
Confidence 699999999999876 245677899998887776655432111 1122
Q ss_pred cceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhccccc
Q 046715 154 KSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIR 233 (501)
Q Consensus 154 ~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~~ 233 (501)
.....|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|++.++|||||++++||+.++..
T Consensus 51 ~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~- 129 (338)
T cd01370 51 NKELKYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEER- 129 (338)
T ss_pred CCceEEEeccccCCCCCHHHHHHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhc-
Confidence 2356799999999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred CCCccceEEEEEEEEeeccCCCcceeccCCC-Ccccccc-----cccccCceEEEecCHHHHHHHHHHhhccccccccCC
Q 046715 234 SSESTRSFYLSIFEIYSERGKGEKLLDLLPD-GVDLCMQ-----QSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNS 307 (501)
Q Consensus 234 ~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~-~~~~~~~-----~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~ 307 (501)
.....+.|++||+||||| +|+|||++ ...+.++ +.++.|++++.|.+++|++++|..|.++|++++|.+
T Consensus 130 ~~~~~~~v~vS~~EIyne-----~v~DLL~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~ 204 (338)
T cd01370 130 KDDKEFEVSLSYLEIYNE-----TIRDLLSPSSGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEA 204 (338)
T ss_pred ccCceEEEEEEEEEEECC-----EEEECCCCCCCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccc
Confidence 346789999999999998 99999987 4555554 458999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc----C---
Q 046715 308 NNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR----K--- 380 (501)
Q Consensus 308 n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~----~--- 380 (501)
|..|||||+||+|++.+.............|+|+|||||||||..+++..|.+++|+..||+||++|++||. .
T Consensus 205 n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~ 284 (338)
T cd01370 205 NATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKK 284 (338)
T ss_pred cCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCC
Confidence 999999999999999987755433444567999999999999999999999999999999999999999997 3
Q ss_pred CCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccC
Q 046715 381 PLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKI 434 (501)
Q Consensus 381 ~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I 434 (501)
..|+||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||++|
T Consensus 285 ~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 285 NKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred CCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 389999999999999999999999999999999999999999999999999987
No 6
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.3e-79 Score=648.34 Aligned_cols=382 Identities=25% Similarity=0.375 Sum_probs=319.3
Q ss_pred CCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCcccccccccc
Q 046715 75 PSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTSKRIK 154 (501)
Q Consensus 75 ~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~~~~~ 154 (501)
...+|||.|||||++..| ..-...|+.-.++++.+|+.|.........+
T Consensus 2 s~~kVkVaVRVRP~nrRE-------------------------------l~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k 50 (1714)
T KOG0241|consen 2 SDAKVKVAVRVRPMNRRE-------------------------------LELSTKCVVEVDKNQTVLHPPPPNHKIGESK 50 (1714)
T ss_pred CCcceEEEEEecccchhh-------------------------------hcccccceEEeccCceeecCCCccccccccC
Confidence 357899999999999888 3334455555566666666654433334445
Q ss_pred ceeeecccccCCCC-------CchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHh
Q 046715 155 SEVYQGFSYVFSAD-------SSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFK 227 (501)
Q Consensus 155 ~~~~f~FD~Vf~~~-------~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~ 227 (501)
..+.|.||++|++- +.|+.||+.++.-+|+++|+|||+||||||||||||||||+|..+++|||||++..||.
T Consensus 51 ~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe 130 (1714)
T KOG0241|consen 51 GPKTFAFDHCFWSMDPESKNYAGQETVFKCLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFE 130 (1714)
T ss_pred CCceeecccccccCCccccccccchhHHHhcchHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHH
Confidence 67789999999875 68999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCccceEEEEEEEEeeccCCCcceeccCCCCcc--------cccccccccCceEEEecCHHHHHHHHHHhhcc
Q 046715 228 GTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVD--------LCMQQSTIKGLQEIIISDAAQAESLIARAMLK 299 (501)
Q Consensus 228 ~~~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~--------~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~ 299 (501)
.|.........|.|.|||+||||| +++|||.+... ..+-|.+|.||+++.|.|++|+-.++..|.++
T Consensus 131 ~I~k~~n~~~tfkVeVSymEIynE-----kv~DLLdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKs 205 (1714)
T KOG0241|consen 131 RIDKESNPSQTFKVEVSYMEIYNE-----KVRDLLDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKS 205 (1714)
T ss_pred HHHhccCCCceEEEEEEHHHHhhc-----chhhhhCCCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhcccc
Confidence 999988888999999999999998 99999987642 23346799999999999999999999999999
Q ss_pred ccccccCCCCCCCCceeEEEEEEeeeeccCCCcc-ccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHh
Q 046715 300 RATAMTNSNNQSSRSQCIINLRCAANELSRGDGV-HANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCL 378 (501)
Q Consensus 300 R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~-~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi 378 (501)
|++++|+||..|||||+||.|.|.|.-.+...+. -.+.|+|.|||||||||+.++++.|.+++|+++||+||.+||.||
T Consensus 206 rtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVI 285 (1714)
T KOG0241|consen 206 RTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVI 285 (1714)
T ss_pred ceeeeecccccccccceeEEEEEeeEEeccccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHH
Confidence 9999999999999999999999998765544332 356799999999999999999999999999999999999999999
Q ss_pred c----------CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCchhh---
Q 046715 379 R----------KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDSSNF--- 445 (501)
Q Consensus 379 ~----------~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~~~~--- 445 (501)
. +.++||||||.||+||+|+|||||+|+||+||||+..+|+|||+|||||.|||+|+|..++|.+..
T Consensus 286 saLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarv 365 (1714)
T KOG0241|consen 286 SALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARV 365 (1714)
T ss_pred HHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHH
Confidence 7 456999999999999999999999999999999999999999999999999999999999887743
Q ss_pred -hhhhhhccchhhHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046715 446 -LCSKRQLPSLSGKDQLKRVKLSG-LEACSERNDQIMQKFAKAMWNVLKEYNHKLK 499 (501)
Q Consensus 446 -~~~~~~~~~l~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~e~~~~l~ 499 (501)
++++.++..| ++++.. ......+.++.+++..+-+++....|++||.
T Consensus 366 irElReEve~l-------r~qL~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ 414 (1714)
T KOG0241|consen 366 IRELREEVEKL-------REQLEQAEAMKLPELKEKLEESEKLIKEITVTWEEKLR 414 (1714)
T ss_pred HHHHHHHHHHH-------HHHHhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3333333333 333332 2223444455555555555666666666654
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.9e-78 Score=623.23 Aligned_cols=312 Identities=27% Similarity=0.383 Sum_probs=274.8
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCccccccccccce
Q 046715 77 ETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTSKRIKSE 156 (501)
Q Consensus 77 ~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~~~~~~~ 156 (501)
++|+||||+||+...| ...+...|+...+++++.+.... .
T Consensus 1 ~~i~V~vRvRP~~~~e------------------------------~~~~~~~~v~~~~~~~~~~~~~~----------~ 40 (337)
T cd01373 1 PAVKVVVRIRPPNEIE------------------------------ADGGQGQCLKKLSSDTLVWHSHP----------P 40 (337)
T ss_pred CCeEEEEEcCcCChhh------------------------------cccCCCeEEEEcCCCcEEeeCCC----------C
Confidence 4799999999998766 13456678877776666665421 2
Q ss_pred eeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCC--------CCCCchhHHHHHHhh
Q 046715 157 VYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPR--------EPGMVPIALKRIFKG 228 (501)
Q Consensus 157 ~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~--------~~GIipr~~~~LF~~ 228 (501)
+.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|+.. ++|||||++++||+.
T Consensus 41 ~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~ 120 (337)
T cd01373 41 RMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSL 120 (337)
T ss_pred cEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999999999999753 679999999999998
Q ss_pred ccccc---CCCccceEEEEEEEEeeccCCCcceeccCCCCc-cccc-----ccccccCceEEEecCHHHHHHHHHHhhcc
Q 046715 229 TTKIR---SSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV-DLCM-----QQSTIKGLQEIIISDAAQAESLIARAMLK 299 (501)
Q Consensus 229 ~~~~~---~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~-~~~~-----~~~~v~~l~~~~v~s~~e~~~ll~~g~~~ 299 (501)
+.... .....|.|++||+||||| +|+|||.+.. .+.+ .+.+++|++++.|.|++|++++|..|.++
T Consensus 121 i~~~~~~~~~~~~~~v~~S~~EIyne-----~v~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~ 195 (337)
T cd01373 121 IQREEEKRGDGLKFLCKCSFLEIYNE-----QITDLLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSN 195 (337)
T ss_pred HHhhhhhcccCceEEEEEEEEeecCC-----EeeeCCCCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhc
Confidence 87532 245678999999999998 9999997653 3443 35689999999999999999999999999
Q ss_pred ccccccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc
Q 046715 300 RATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR 379 (501)
Q Consensus 300 R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~ 379 (501)
|++++|.+|..|||||+||+|+|.+....... .....|+|+|||||||||..++++.|.+++|+..||+||++|++||.
T Consensus 196 R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~-~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~ 274 (337)
T cd01373 196 RKVAATSMNSESSRSHAVFTCTIESWEKKASS-TNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIM 274 (337)
T ss_pred cCcccCcCCCCCCCccEEEEEEEEEeecCCCC-CcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHH
Confidence 99999999999999999999999876543322 23456999999999999999999999999999999999999999997
Q ss_pred --------CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccC
Q 046715 380 --------KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKI 434 (501)
Q Consensus 380 --------~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I 434 (501)
+..|+||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 275 aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 275 ALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred HHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 3589999999999999999999999999999999999999999999999999987
No 8
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=2.6e-78 Score=623.81 Aligned_cols=314 Identities=31% Similarity=0.504 Sum_probs=280.6
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCcccccc----cc
Q 046715 77 ETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTS----KR 152 (501)
Q Consensus 77 ~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~----~~ 152 (501)
++|+|||||||+...| ...+...|+.+.++++|.+++|...... ..
T Consensus 1 ~~i~V~vRvRP~~~~E------------------------------~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~ 50 (345)
T cd01368 1 DPVKVYLRVRPLSKDE------------------------------LESEDEGCIEVINSTTIQLHPPKGSAARKSERNG 50 (345)
T ss_pred CCEEEEEEeCcCCchh------------------------------hccCCCceEEEcCCCEEEEeCCcccccccccccc
Confidence 4799999999999877 2446788899999999999988653321 12
Q ss_pred ccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcccc
Q 046715 153 IKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKI 232 (501)
Q Consensus 153 ~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~ 232 (501)
...+..|.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+|+++++|||||++++||+.+..
T Consensus 51 ~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~- 129 (345)
T cd01368 51 GQKETKFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG- 129 (345)
T ss_pred CCCceEeecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-
Confidence 3345679999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cCCCccceEEEEEEEEeeccCCCcceeccCCCCc-------cccc-----ccccccCceEEEecCHHHHHHHHHHhhccc
Q 046715 233 RSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV-------DLCM-----QQSTIKGLQEIIISDAAQAESLIARAMLKR 300 (501)
Q Consensus 233 ~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~-------~~~~-----~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R 300 (501)
|.|+|||+||||| +|+|||.+.. .+.+ .+.+|+|++++.|.|++|++++|..|.++|
T Consensus 130 ------~~v~~S~~EIyne-----~v~DLL~~~~~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R 198 (345)
T cd01368 130 ------YSVFVSYVEIYNN-----YIYDLLEDSPSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNR 198 (345)
T ss_pred ------eeEEEEEEEEeCC-----EeEeCCCCccccccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccc
Confidence 8999999999998 9999997643 2333 345899999999999999999999999999
Q ss_pred cccccCCCCCCCCceeEEEEEEeeeeccCCC-----ccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHH
Q 046715 301 ATAMTNSNNQSSRSQCIINLRCAANELSRGD-----GVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFG 375 (501)
Q Consensus 301 ~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~-----~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~ 375 (501)
.+++|.+|..|||||+||+|++.+......+ ......|+|+|||||||||..++++.|.+++|+..||+||++|+
T Consensus 199 ~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~ 278 (345)
T cd01368 199 RVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLG 278 (345)
T ss_pred eeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHH
Confidence 9999999999999999999999887544321 12345689999999999999999999999999999999999999
Q ss_pred HHhc----------CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcc
Q 046715 376 LCLR----------KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYM 432 (501)
Q Consensus 376 ~vi~----------~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~ 432 (501)
+||. +..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 279 ~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 279 KCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9997 36799999999999999999999999999999999999999999999999985
No 9
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.9e-77 Score=620.47 Aligned_cols=327 Identities=26% Similarity=0.395 Sum_probs=290.8
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCccccccccccce
Q 046715 77 ETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTSKRIKSE 156 (501)
Q Consensus 77 ~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~~~~~~~ 156 (501)
++|+||||+||+...| ...+...|+.+.+ +++++.+|.... ......
T Consensus 1 ~~i~V~vRvRP~~~~E------------------------------~~~~~~~~~~~~~-~~v~v~~~~~~~--~~~~~~ 47 (356)
T cd01365 1 ANVKVAVRVRPFNSRE------------------------------KNRGSKCIVQMPG-KVTTLKNPKAAD--ATRKKP 47 (356)
T ss_pred CCEEEEEEeCcCChhh------------------------------hccCCceEEEECC-CEEEEEcCCccc--ccccCc
Confidence 5899999999999877 2345567777777 888888875421 112234
Q ss_pred eeecccccCCCC-------CchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhc
Q 046715 157 VYQGFSYVFSAD-------SSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGT 229 (501)
Q Consensus 157 ~~f~FD~Vf~~~-------~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~ 229 (501)
..|.||+||+++ ++|++||+.++.|+|+++++|+|+||||||||||||||||+|+..++|||||++++||+.+
T Consensus 48 ~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~ 127 (356)
T cd01365 48 KSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRI 127 (356)
T ss_pred eEEECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHH
Confidence 679999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccceEEEEEEEEeeccCCCcceeccCCCCc----cccc-----ccccccCceEEEecCHHHHHHHHHHhhccc
Q 046715 230 TKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV----DLCM-----QQSTIKGLQEIIISDAAQAESLIARAMLKR 300 (501)
Q Consensus 230 ~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~----~~~~-----~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R 300 (501)
.........|.|++||+||||| +|+|||++.. .+.+ .+.+++|++++.|.|++|++.+|..|.++|
T Consensus 128 ~~~~~~~~~~~v~~S~~EIy~e-----~v~DLL~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R 202 (356)
T cd01365 128 ESKKEQNLSYEVEVSYMEIYNE-----KVRDLLNPKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSR 202 (356)
T ss_pred hhccccCceEEEEEEEEEEECC-----eeeeCCCCCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcc
Confidence 8755557889999999999998 9999998763 3333 356899999999999999999999999999
Q ss_pred cccccCCCCCCCCceeEEEEEEeeeeccCC-CccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc
Q 046715 301 ATAMTNSNNQSSRSQCIINLRCAANELSRG-DGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR 379 (501)
Q Consensus 301 ~~~~t~~n~~SSRSH~If~i~v~~~~~~~~-~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~ 379 (501)
.+++|.+|..|||||+||+|++.+...... .......|+|+||||||||+..+++..+.+++|+..||+||++|++||.
T Consensus 203 ~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~ 282 (356)
T cd01365 203 TTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVIS 282 (356)
T ss_pred cccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999998765532 2334557999999999999999999999999999999999999999996
Q ss_pred ------------CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccC
Q 046715 380 ------------KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVED 441 (501)
Q Consensus 380 ------------~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~ 441 (501)
+..|+||||||||+||+|+||||++|+||+||||...+++||++||+||+++++|++.++.|
T Consensus 283 ~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 283 ALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred HHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 25899999999999999999999999999999999999999999999999999999988754
No 10
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9e-78 Score=658.30 Aligned_cols=290 Identities=33% Similarity=0.488 Sum_probs=262.8
Q ss_pred eeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcccccCC
Q 046715 156 EVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSS 235 (501)
Q Consensus 156 ~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~~~~ 235 (501)
...|.||+||+++++|++||+.+++|+|++|++|||++|||||||||||||||.|..++|||||+++.+||+.|... .
T Consensus 52 ~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~--~ 129 (675)
T KOG0242|consen 52 PEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKS--G 129 (675)
T ss_pred ccceeeeeecCCCCCHHHHHHhccHHHHHHHhcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhc--C
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999983 3
Q ss_pred CccceEEEEEEEEeeccCCCcceeccCCCCcc-ccc-----ccccccCceEEEecCHHHHHHHHHHhhccccccccCCCC
Q 046715 236 ESTRSFYLSIFEIYSERGKGEKLLDLLPDGVD-LCM-----QQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNN 309 (501)
Q Consensus 236 ~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~-~~~-----~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~ 309 (501)
+..|.|.|||+||||| .|+|||.+... +.+ ++.+|.||++..|.|+++++.+|..|.++|+++.|.+|.
T Consensus 130 ~r~f~v~vSYlEIYNE-----~I~DLL~~~~~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~ 204 (675)
T KOG0242|consen 130 EREFSVRVSYLEIYNE-----RIRDLLNPDGGDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNE 204 (675)
T ss_pred CceeEEEEEEEEEecc-----ccccccCCCCCCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCccccccccc
Confidence 8899999999999998 99999987643 444 477999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc------CCCC
Q 046715 310 QSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR------KPLQ 383 (501)
Q Consensus 310 ~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~------~~~~ 383 (501)
.|||||+||+|.+.+...... . ..++|+|||||||||+.++++.|.|++||.+||+||++||+||+ ...|
T Consensus 205 ~SSRSHaIl~i~i~s~~~~~~---~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~h 280 (675)
T KOG0242|consen 205 QSSRSHAILRITVESRGREAS---S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRH 280 (675)
T ss_pred ccchhhheeeEEEEecccccc---c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCC
Confidence 999999999999988765444 1 56899999999999999999999999999999999999999998 3458
Q ss_pred cccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCch-----hhhhhhhhccchh
Q 046715 384 KHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDSS-----NFLCSKRQLPSLS 456 (501)
Q Consensus 384 vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~~-----~~~~~~~~~~~l~ 456 (501)
|||||||||||||++|||||+|.|||||+|+..+|+||.+||+||+||++|+++.-+|.. ....+++++..|+
T Consensus 281 ipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~ 358 (675)
T KOG0242|consen 281 IPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELE 358 (675)
T ss_pred CCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987655433 2223345555553
No 11
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=7.7e-77 Score=607.87 Aligned_cols=312 Identities=29% Similarity=0.402 Sum_probs=280.9
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCccccccccccce
Q 046715 77 ETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTSKRIKSE 156 (501)
Q Consensus 77 ~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~~~~~~~ 156 (501)
++|+|||||||+...| ...+...++.+.++++|++++|............
T Consensus 1 ~~i~V~vRvRP~~~~e------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 50 (322)
T cd01367 1 MKITVAVRKRPLNDKE------------------------------LSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEK 50 (322)
T ss_pred CCeEEEEEcCcCChhh------------------------------hccCCceEEEECCCCEEEEecCccccccccccCC
Confidence 4899999999999766 2345566778877789999987655444333345
Q ss_pred eeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcccccCCC
Q 046715 157 VYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSSE 236 (501)
Q Consensus 157 ~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~~~~~ 236 (501)
..|.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+|+.+++|||||++++||+.++...
T Consensus 51 ~~f~FD~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~--- 127 (322)
T cd01367 51 HTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN--- 127 (322)
T ss_pred ceEecceEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc---
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999988732
Q ss_pred ccceEEEEEEEEeeccCCCcceeccCCCCcccccc-----cccccCceEEEecCHHHHHHHHHHhhccccccccCCCCCC
Q 046715 237 STRSFYLSIFEIYSERGKGEKLLDLLPDGVDLCMQ-----QSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQS 311 (501)
Q Consensus 237 ~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~~~~~-----~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~S 311 (501)
..|.|++||+||||| +++|||.+...+.++ +.++.|++++.|.|++|++++|..|.++|.+++|.+|..|
T Consensus 128 ~~~~v~~S~~EIy~e-----~v~DLL~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~S 202 (322)
T cd01367 128 DDLGVTVSFFEIYGG-----KLFDLLNDRKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQS 202 (322)
T ss_pred cccEEEEEEEeeecC-----chhhhccCccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCc
Confidence 679999999999998 999999887766654 4589999999999999999999999999999999999999
Q ss_pred CCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccC-CcchhhhHHHHHhhhHHHHHHHhc----CCCCccc
Q 046715 312 SRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTG-NQGARLLESNFINNTSMVFGLCLR----KPLQKHF 386 (501)
Q Consensus 312 SRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~-~~g~~~~E~~~IN~SL~~L~~vi~----~~~~vpy 386 (501)
||||+||+|++.+... ....|+|+||||||||+....+ ..+.+++|+..||+||++|++||. +..|+||
T Consensus 203 SRSH~i~~i~v~~~~~------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPy 276 (322)
T cd01367 203 SRSHAILQIILKNKKL------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPF 276 (322)
T ss_pred ccceEEEEEEEEEecC------CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCC
Confidence 9999999999987653 2346899999999999998765 468899999999999999999997 5689999
Q ss_pred CcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcc
Q 046715 387 QNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYM 432 (501)
Q Consensus 387 RdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~ 432 (501)
||||||+||+|+|||||+|+||+||||+..+++||++||+||+|+|
T Consensus 277 RdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 277 RGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred ccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999986
No 12
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=5.4e-77 Score=614.74 Aligned_cols=321 Identities=30% Similarity=0.384 Sum_probs=280.3
Q ss_pred CCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcC-CceEEecCCccccccccc
Q 046715 75 PSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVND-HNSVTLSPPLALQTSKRI 153 (501)
Q Consensus 75 ~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~v~l~~p~~~~~~~~~ 153 (501)
..++|+|+||+||++..|.. .++..+....+ .++|.+.....
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~------------------------------~~~~~i~~~~~~~~~v~~~~~~~------- 47 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENN------------------------------LGSKFIDCFENGENTVVLETTKE------- 47 (607)
T ss_pred CCCceEEEEEeecCCchhhh------------------------------cCCcCccCCCCCcceEEEecccc-------
Confidence 45899999999999988822 22222222222 44555543211
Q ss_pred cceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCC---CCCCchhHHHHHHhhcc
Q 046715 154 KSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPR---EPGMVPIALKRIFKGTT 230 (501)
Q Consensus 154 ~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~---~~GIipr~~~~LF~~~~ 230 (501)
...|.||+||+++++|++||+.++.|+|++||.|||+||||||||||||||||.|... ..|||||++++||..|.
T Consensus 48 --~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iy 125 (607)
T KOG0240|consen 48 --TKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIY 125 (607)
T ss_pred --cccceeeeecCCCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHh
Confidence 1348999999999999999999999999999999999999999999999999999766 45999999999999998
Q ss_pred cccCCCccceEEEEEEEEeeccCCCcceeccCCCCc-ccc-----cccccccCceEEEecCHHHHHHHHHHhhccccccc
Q 046715 231 KIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV-DLC-----MQQSTIKGLQEIIISDAAQAESLIARAMLKRATAM 304 (501)
Q Consensus 231 ~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~-~~~-----~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~ 304 (501)
. -.....|.|.|||||||+| +|+|||.+.+ .+. .++.+|+|+++..|.++++++++|+.|..+|+++.
T Consensus 126 s-~~~n~efhVkVsy~EIYmE-----Ki~DLL~~~k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~ 199 (607)
T KOG0240|consen 126 S-MEENLEFHVKVSYFEIYME-----KIRDLLDPEKTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAV 199 (607)
T ss_pred c-CcccceEEEEEEeehhhhh-----HHHHHhCcccCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhh
Confidence 8 3445789999999999999 9999997643 344 34569999999999999999999999999999999
Q ss_pred cCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc-----
Q 046715 305 TNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR----- 379 (501)
Q Consensus 305 t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~----- 379 (501)
|+||.+|||||+||+|+|.|.+.... ....|+|+||||||||+..++|++|.-+.|+++||+||.+||+||+
T Consensus 200 t~mn~~sSRSHsIF~i~VkQ~n~e~~---~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g 276 (607)
T KOG0240|consen 200 TNMNEHSSRSHSIFLIHVKQENVEDK---RKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEG 276 (607)
T ss_pred ccccccccccceEEEEEEEeccccch---hhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 99999999999999999998765443 3567999999999999999999999999999999999999999998
Q ss_pred CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCch
Q 046715 380 KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDSS 443 (501)
Q Consensus 380 ~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~~ 443 (501)
...|||||||||||+|+|+|||||+|++|.|++|+.-+..||.+||+|+.||+.|+|....|..
T Consensus 277 ~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e 340 (607)
T KOG0240|consen 277 PKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLE 340 (607)
T ss_pred CCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhH
Confidence 4789999999999999999999999999999999999999999999999999999998776644
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.5e-75 Score=601.26 Aligned_cols=317 Identities=29% Similarity=0.443 Sum_probs=282.2
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEc-CCceEEecCCccccccccccc
Q 046715 77 ETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVN-DHNSVTLSPPLALQTSKRIKS 155 (501)
Q Consensus 77 ~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~v~l~~p~~~~~~~~~~~ 155 (501)
++|+|+||+||+...| ...+...++.++ +..+|.+.+|.... ...
T Consensus 1 ~~i~V~vRvRP~~~~e------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~ 46 (333)
T cd01371 1 ENVKVVVRCRPLNKRE------------------------------KSEGAPEIVGVDENRGQVTVHNPKADA----KEP 46 (333)
T ss_pred CCeEEEEEcCcCChhh------------------------------hhcCCCeEEEEcCCCCEEEEeCCcccc----cCC
Confidence 5899999999999877 234556667775 47788888875421 123
Q ss_pred eeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCC---CCCCchhHHHHHHhhcccc
Q 046715 156 EVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPR---EPGMVPIALKRIFKGTTKI 232 (501)
Q Consensus 156 ~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~---~~GIipr~~~~LF~~~~~~ 232 (501)
...|.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+|+.. ++|||||++++||+.+...
T Consensus 47 ~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~ 126 (333)
T cd01371 47 PKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKA 126 (333)
T ss_pred CceeeeccccCCCccHHHHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhc
Confidence 4579999999999999999999999999999999999999999999999999999987 8999999999999998873
Q ss_pred cCCCccceEEEEEEEEeeccCCCcceeccCCCCc--cccc-----ccccccCceEEEecCHHHHHHHHHHhhcccccccc
Q 046715 233 RSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV--DLCM-----QQSTIKGLQEIIISDAAQAESLIARAMLKRATAMT 305 (501)
Q Consensus 233 ~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~--~~~~-----~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t 305 (501)
.+..|.|+|||+|||+| +|+|||.+.. .+.+ ++.+|.|++++.|.|++|+..+|..|.++|.++.|
T Consensus 127 --~~~~~~v~~S~~Eiy~e-----~v~DLL~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t 199 (333)
T cd01371 127 --ENVQFLVRVSYLEIYNE-----EVRDLLGKDQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGAT 199 (333)
T ss_pred --cCccEEEEEEEEEeeCC-----eeeeCCCCCCCCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccc
Confidence 34789999999999998 9999998665 3333 35689999999999999999999999999999999
Q ss_pred CCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc-----C
Q 046715 306 NSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR-----K 380 (501)
Q Consensus 306 ~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~-----~ 380 (501)
.+|..|||||+||+|+|.+.+....+......|+|+||||||||+..+++..+.+++|+..||+||.+|++||. +
T Consensus 200 ~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~ 279 (333)
T cd01371 200 NMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGK 279 (333)
T ss_pred cccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCC
Confidence 99999999999999999987765433444567999999999999999999999999999999999999999997 3
Q ss_pred CCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccC
Q 046715 381 PLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKI 434 (501)
Q Consensus 381 ~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I 434 (501)
..|+|||+||||+||+|+|||||+|+||+||+|...+++||++||+||+|+|+|
T Consensus 280 ~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 280 STHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred CCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 459999999999999999999999999999999999999999999999999987
No 14
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=2.1e-75 Score=604.58 Aligned_cols=324 Identities=28% Similarity=0.395 Sum_probs=287.6
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcC-CceEEecCCccccccccccc
Q 046715 77 ETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVND-HNSVTLSPPLALQTSKRIKS 155 (501)
Q Consensus 77 ~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~v~l~~p~~~~~~~~~~~ 155 (501)
.+|+|+||+||+...| ...+...++.+.+ +++|.+.++... ...
T Consensus 2 ~~i~V~vRvRP~~~~e------------------------------~~~~~~~~i~~~~~~~~i~~~~~~~~-----~~~ 46 (352)
T cd01364 2 SNIQVVVRCRPRNSRE------------------------------RKEKSSVVVEVSGSSKEIIVSTGGAD-----KQS 46 (352)
T ss_pred CCEEEEEEcCcCCccc------------------------------cccCCCeEEEEcCCCcEEEEcCCCcc-----ccc
Confidence 5899999999998876 2445667777775 578888765321 112
Q ss_pred eeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCC-----------CCCCCchhHHHH
Q 046715 156 EVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCP-----------REPGMVPIALKR 224 (501)
Q Consensus 156 ~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~-----------~~~GIipr~~~~ 224 (501)
...|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|+. +++|||||++++
T Consensus 47 ~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~ 126 (352)
T cd01364 47 TKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQ 126 (352)
T ss_pred ceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHH
Confidence 356999999999999999999999999999999999999999999999999999984 348999999999
Q ss_pred HHhhcccccCCCccceEEEEEEEEeeccCCCcceeccCCCCc----ccc-------cccccccCceEEEecCHHHHHHHH
Q 046715 225 IFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV----DLC-------MQQSTIKGLQEIIISDAAQAESLI 293 (501)
Q Consensus 225 LF~~~~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~----~~~-------~~~~~v~~l~~~~v~s~~e~~~ll 293 (501)
||+.+... ...|.|++||+|||+| +|+|||++.. .+. ..+.+|.|++++.|.|++|++.+|
T Consensus 127 Lf~~~~~~---~~~~~v~~S~~EIy~e-----~v~DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l 198 (352)
T cd01364 127 LFEKLESQ---NTEYSVKVSYLELYNE-----ELFDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLL 198 (352)
T ss_pred HHHHHHhc---cceeEEEEEEEEeeCC-----eeeeCCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHH
Confidence 99998872 6789999999999998 9999997653 332 345689999999999999999999
Q ss_pred HHhhccccccccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHH
Q 046715 294 ARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMV 373 (501)
Q Consensus 294 ~~g~~~R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~ 373 (501)
..|.++|++++|.+|..|||||+||+|++.+......+......|+|+||||||+|+..+.++.+.+++|+..||+||++
T Consensus 199 ~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~ 278 (352)
T cd01364 199 EKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLT 278 (352)
T ss_pred HHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHH
Confidence 99999999999999999999999999999887654433333456899999999999999999999999999999999999
Q ss_pred HHHHhc----CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCch
Q 046715 374 FGLCLR----KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDSS 443 (501)
Q Consensus 374 L~~vi~----~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~~ 443 (501)
|++||. +..|+|||+|+||+||+|+|||||+|+||+||||+..+++||++||+||+++++|+|.|+.|++
T Consensus 279 L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 279 LGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred HHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCCC
Confidence 999997 6789999999999999999999999999999999999999999999999999999999998863
No 15
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.3e-74 Score=591.02 Aligned_cols=304 Identities=30% Similarity=0.480 Sum_probs=272.4
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCC-----ceEEecCCcccccccc
Q 046715 78 TLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDH-----NSVTLSPPLALQTSKR 152 (501)
Q Consensus 78 ~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~v~l~~p~~~~~~~~ 152 (501)
+|+|||||||+...| .+...|+.+.++ .+|.+.+|.+...
T Consensus 1 ~i~V~vRvRP~~~~e--------------------------------~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~--- 45 (319)
T cd01376 1 NVRVVVRVRPFLDCE--------------------------------EDSSSCVRGIDSDQGQAKSVEIENPRNRGE--- 45 (319)
T ss_pred CcEEEEEeCcCCccc--------------------------------cCCCceEEEeCCCCCcceEEEEeCCCCCCC---
Confidence 689999999998765 234556666543 5888888754332
Q ss_pred ccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcccc
Q 046715 153 IKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKI 232 (501)
Q Consensus 153 ~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~ 232 (501)
...|.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+|+..++|||||++++||+.++.
T Consensus 46 ---~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~- 121 (319)
T cd01376 46 ---TKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRK- 121 (319)
T ss_pred ---ccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhh-
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999998866
Q ss_pred cCCCccceEEEEEEEEeeccCCCcceeccCCC-Ccccccc-----cccccCceEEEecCHHHHHHHHHHhhccccccccC
Q 046715 233 RSSESTRSFYLSIFEIYSERGKGEKLLDLLPD-GVDLCMQ-----QSTIKGLQEIIISDAAQAESLIARAMLKRATAMTN 306 (501)
Q Consensus 233 ~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~-~~~~~~~-----~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~ 306 (501)
....+.|++||+|||+| .|+|||.+ ...+.++ +.++.|++++.|.+++|+..+|..|.++|.+++|.
T Consensus 122 --~~~~~~v~~S~~EIy~e-----~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~ 194 (319)
T cd01376 122 --QAWTGAFSMSYYEIYNE-----KVYDLLEPAKKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATK 194 (319)
T ss_pred --ccccceEEEEEEEEECC-----EeeEccCCCCCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCc
Confidence 23679999999999998 99999976 3444443 45899999999999999999999999999999999
Q ss_pred CCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc----CCC
Q 046715 307 SNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR----KPL 382 (501)
Q Consensus 307 ~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~----~~~ 382 (501)
+|..|||||+||+|++.+.... ....|+|+||||||||+..+++..|.+++|+..||+||++|++||. +..
T Consensus 195 ~n~~SSRSH~i~~i~v~~~~~~-----~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~ 269 (319)
T cd01376 195 LNDNSSRSHAVLRIKVTQPASN-----IQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLP 269 (319)
T ss_pred CCCccCCCeEEEEEEEEEECCC-----ceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCC
Confidence 9999999999999999876432 1456899999999999999999999999999999999999999997 568
Q ss_pred CcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcc
Q 046715 383 QKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYM 432 (501)
Q Consensus 383 ~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~ 432 (501)
|+|||+|+||+||+|+|||||+|+||+||||...+++||++||+||+|+|
T Consensus 270 ~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 270 RIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred cCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999986
No 16
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.4e-74 Score=591.43 Aligned_cols=309 Identities=31% Similarity=0.491 Sum_probs=278.5
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCcccccccccccee
Q 046715 78 TLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTSKRIKSEV 157 (501)
Q Consensus 78 ~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~~~~~~~~ 157 (501)
+|+|+||+||+...| ..+...++.++++++|.+.++ ....
T Consensus 1 ~V~V~vRvRP~~~~e-------------------------------~~~~~~~~~~~~~~~v~~~~~---------~~~~ 40 (321)
T cd01374 1 KIKVSVRVRPLNPRE-------------------------------SDNEQVAWSIDNDNTISLEES---------TPGQ 40 (321)
T ss_pred CeEEEEEcCcCCccc-------------------------------ccCCcceEEECCCCEEEEcCC---------CCCe
Confidence 699999999998776 233456677777778888775 1245
Q ss_pred eecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcccccCCCc
Q 046715 158 YQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSSES 237 (501)
Q Consensus 158 ~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~~~~~~ 237 (501)
.|.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+|+..++|||||++++||+.+.+ ..+.
T Consensus 41 ~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~--~~~~ 118 (321)
T cd01374 41 SFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQD--TPDR 118 (321)
T ss_pred EEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhc--ccCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999977 3367
Q ss_pred cceEEEEEEEEeeccCCCcceeccCCCC-ccccc-----ccccccCceEEEecCHHHHHHHHHHhhccccccccCCCCCC
Q 046715 238 TRSFYLSIFEIYSERGKGEKLLDLLPDG-VDLCM-----QQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQS 311 (501)
Q Consensus 238 ~~~v~vS~~EIynE~~~~e~i~DLL~~~-~~~~~-----~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~S 311 (501)
.|.|++||+||||| +|+|||.+. ..+.+ .+.++.|++++.|.|++|+.++|..|.++|+.++|.+|..|
T Consensus 119 ~~~v~~S~~Eiy~e-----~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~s 193 (321)
T cd01374 119 EFLLRVSYLEIYNE-----KIKDLLSPSPQELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERS 193 (321)
T ss_pred eEEEEEEEEEEEcC-----EeEEccCCCCCCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCcc
Confidence 88999999999998 999999876 44444 35689999999999999999999999999999999999999
Q ss_pred CCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc----C--CCCcc
Q 046715 312 SRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR----K--PLQKH 385 (501)
Q Consensus 312 SRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~----~--~~~vp 385 (501)
||||+||+|+|.+.............|+|+||||||+|+..+.+ .+.+++|+..||+||++|++||. . ..|+|
T Consensus 194 sRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vp 272 (321)
T cd01374 194 SRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIP 272 (321)
T ss_pred ccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCC
Confidence 99999999999987655433334556999999999999999988 89999999999999999999997 3 48999
Q ss_pred cCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccC
Q 046715 386 FQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKI 434 (501)
Q Consensus 386 yRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I 434 (501)
||+||||+||+|+|||||+|+||+||||...+++||++||+||+|+++|
T Consensus 273 yR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 273 YRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred CcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999986
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=2.1e-74 Score=591.13 Aligned_cols=310 Identities=29% Similarity=0.429 Sum_probs=281.1
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCccccccccccce
Q 046715 77 ETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTSKRIKSE 156 (501)
Q Consensus 77 ~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~~~~~~~ 156 (501)
++|+|+|||||+...| ...+...|+.+.++++|++.++. ..
T Consensus 2 ~~i~V~vRvRP~~~~e------------------------------~~~~~~~~v~~~~~~~v~~~~~~---------~~ 42 (325)
T cd01369 2 CNIKVVCRFRPLNEKE------------------------------ELRGSKSIVKFPGEDTVSIAGSD---------DG 42 (325)
T ss_pred CCeEEEEEcCcCChhh------------------------------hccCCceEEEEcCCCEEEecCCC---------Cc
Confidence 6899999999998765 24577889999988999998752 23
Q ss_pred eeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCC---CCCCchhHHHHHHhhccccc
Q 046715 157 VYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPR---EPGMVPIALKRIFKGTTKIR 233 (501)
Q Consensus 157 ~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~---~~GIipr~~~~LF~~~~~~~ 233 (501)
..|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+.. ++|||||++++||+.+...
T Consensus 43 ~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~- 121 (325)
T cd01369 43 KTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSM- 121 (325)
T ss_pred eEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhc-
Confidence 469999999999999999999999999999999999999999999999999999988 8999999999999999873
Q ss_pred CCCccceEEEEEEEEeeccCCCcceeccCCCCc-cccc-----ccccccCceEEEecCHHHHHHHHHHhhccccccccCC
Q 046715 234 SSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV-DLCM-----QQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNS 307 (501)
Q Consensus 234 ~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~-~~~~-----~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~ 307 (501)
.....|.|++||+|||+| .++|||++.. .+.+ .+.+++|++++.|.|++|++.+|..|.++|++++|.+
T Consensus 122 ~~~~~~~v~~S~~EIy~e-----~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~ 196 (325)
T cd01369 122 DENLEFHVKVSYLEIYME-----KIRDLLDVSKDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNM 196 (325)
T ss_pred cCCceEEEEEEEEEEECC-----ChhhcccCccCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcC
Confidence 456679999999999998 9999997643 3333 4568999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc----C-CC
Q 046715 308 NNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR----K-PL 382 (501)
Q Consensus 308 n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~----~-~~ 382 (501)
|..|||||+||+|+|.+...... ....|+|+||||||+|+..+.++.|.+++|+..||+||++|++||. + ..
T Consensus 197 n~~ssRSH~i~~i~v~~~~~~~~---~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~ 273 (325)
T cd01369 197 NEESSRSHSIFLITLKQENVETG---SKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKST 273 (325)
T ss_pred CCccccccEEEEEEEEEEecCCC---CEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999988764333 2346899999999999999999999999999999999999999997 3 37
Q ss_pred CcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccC
Q 046715 383 QKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKI 434 (501)
Q Consensus 383 ~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I 434 (501)
|+|||||+||+||+|+|||+|+|+||+||||+..+++||++||+||+|+++|
T Consensus 274 ~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 274 HIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred cCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999987
No 18
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.8e-73 Score=585.81 Aligned_cols=312 Identities=30% Similarity=0.435 Sum_probs=275.4
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCcccccc--ccccc
Q 046715 78 TLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTS--KRIKS 155 (501)
Q Consensus 78 ~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~--~~~~~ 155 (501)
+||||||+||+...+ ...+....+++++++..|...... .....
T Consensus 1 ~i~V~vRvRP~~~~~----------------------------------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 46 (334)
T cd01375 1 TIQVFVRVRPTPTKQ----------------------------------GSSIKLGPDGKSVSSNLPKDLVRGVVNNQQE 46 (334)
T ss_pred CeEEEEECCCCCCCC----------------------------------CccEEEcCCCCEEEEecccccccccccCCcC
Confidence 589999999997533 223455567889999888765433 22335
Q ss_pred eeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCC---CCCCCchhHHHHHHhhcccc
Q 046715 156 EVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCP---REPGMVPIALKRIFKGTTKI 232 (501)
Q Consensus 156 ~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~---~~~GIipr~~~~LF~~~~~~ 232 (501)
...|.||+||++ ++|++||+.++.|+|+++++|+|+||||||||||||||||+|+. .++|||||++++||+.++.
T Consensus 47 ~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~- 124 (334)
T cd01375 47 DFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAM- 124 (334)
T ss_pred ceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHh-
Confidence 567999999999 99999999999999999999999999999999999999999976 4789999999999999987
Q ss_pred cCCCccceEEEEEEEEeeccCCCcceeccCCCCc-------ccccc-----cccccCceEEEecCHHHHHHHHHHhhccc
Q 046715 233 RSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV-------DLCMQ-----QSTIKGLQEIIISDAAQAESLIARAMLKR 300 (501)
Q Consensus 233 ~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~-------~~~~~-----~~~v~~l~~~~v~s~~e~~~ll~~g~~~R 300 (501)
..+..|.|++||+||||| +++|||.+.. .+.++ +.+|+|++++.|.+++|++.+|..|.++|
T Consensus 125 -~~~~~~~v~~S~~Eiy~e-----~v~DLL~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R 198 (334)
T cd01375 125 -RATKTYTVHVSYLEIYNE-----QLYDLLGDTPEALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNR 198 (334)
T ss_pred -ccCcceEEEEEEEEEECC-----EeecCCCCCccccccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhc
Confidence 446679999999999998 9999998763 33333 45899999999999999999999999999
Q ss_pred cccccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc-
Q 046715 301 ATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR- 379 (501)
Q Consensus 301 ~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~- 379 (501)
.+++|.+|..|||||+||+|+|.+........ ....|+|+||||||||+..+++..+..++|+..||+||++|++||.
T Consensus 199 ~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~-~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~ 277 (334)
T cd01375 199 TIAETSMNQASSRSHCIFTIHLESRSREAGSE-VVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINA 277 (334)
T ss_pred ccccCcCcCCcCcCeEEEEEEEEEEecCCCCC-ceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999875443332 3456899999999999999999999999999999999999999997
Q ss_pred ---CC-CCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcc
Q 046715 380 ---KP-LQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYM 432 (501)
Q Consensus 380 ---~~-~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~ 432 (501)
+. .|+||||||||+||+|+|||||+|+||+||||...+++||++||+||+|++
T Consensus 278 l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 278 LSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred HHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 44 799999999999999999999999999999999999999999999999984
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.2e-73 Score=587.26 Aligned_cols=310 Identities=31% Similarity=0.468 Sum_probs=275.7
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcC-CceEEecCCccccccccccce
Q 046715 78 TLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVND-HNSVTLSPPLALQTSKRIKSE 156 (501)
Q Consensus 78 ~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~v~l~~p~~~~~~~~~~~~ 156 (501)
+|+|+||+||+...| ...+...|+.+.+ +.++++.+ +
T Consensus 2 ~i~V~vRvRP~~~~e------------------------------~~~~~~~~~~~~~~~~~v~~~~------------~ 39 (341)
T cd01372 2 SVRVAVRVRPLLPKE------------------------------LLEGCQVCVSVVPGEPQVTVGT------------D 39 (341)
T ss_pred CeEEEEECCCCCchh------------------------------cccCCCeEEEEeCCCCEEEecC------------C
Confidence 699999999998876 2345566776664 45666654 2
Q ss_pred eeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCC------CCCCCchhHHHHHHhhcc
Q 046715 157 VYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCP------REPGMVPIALKRIFKGTT 230 (501)
Q Consensus 157 ~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~------~~~GIipr~~~~LF~~~~ 230 (501)
+.|.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+|+. .++|||||++++||+.+.
T Consensus 40 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~ 119 (341)
T cd01372 40 KSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKID 119 (341)
T ss_pred cEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999984 578999999999999998
Q ss_pred cccCCCccceEEEEEEEEeeccCCCcceeccCCCCc----ccccc-----cccccCceEEEecCHHHHHHHHHHhhcccc
Q 046715 231 KIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV----DLCMQ-----QSTIKGLQEIIISDAAQAESLIARAMLKRA 301 (501)
Q Consensus 231 ~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~----~~~~~-----~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~ 301 (501)
. ......|.|.|||+||||| .++|||.+.. .+.++ +.+|.|++++.|.+++|++.+|..|.++|.
T Consensus 120 ~-~~~~~~~~v~vS~~EIy~e-----~v~DLL~~~~~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~ 193 (341)
T cd01372 120 E-KKDEPDFQLKVSFLELYNE-----EVRDLLSPSTSEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRT 193 (341)
T ss_pred h-ccccceEEEEEEEEEeECC-----eeecCCCCcccCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcc
Confidence 7 3345789999999999998 9999997653 44443 457999999999999999999999999999
Q ss_pred ccccCCCCCCCCceeEEEEEEeeeeccCC-------CccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHH
Q 046715 302 TAMTNSNNQSSRSQCIINLRCAANELSRG-------DGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVF 374 (501)
Q Consensus 302 ~~~t~~n~~SSRSH~If~i~v~~~~~~~~-------~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L 374 (501)
.++|.+|..|||||+||+|+|.+...... .......|+|+||||||+|+..++++.+.+++|+..||+||.+|
T Consensus 194 ~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL 273 (341)
T cd01372 194 TASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLAL 273 (341)
T ss_pred cccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHH
Confidence 99999999999999999999998875411 22335569999999999999999999999999999999999999
Q ss_pred HHHhc----C---CCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCc
Q 046715 375 GLCLR----K---PLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIK 435 (501)
Q Consensus 375 ~~vi~----~---~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik 435 (501)
++||. . ..|+|||+|+||+||+|+||||++|+||+||||...+++||++||+||+++++||
T Consensus 274 ~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 274 GNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99997 2 3799999999999999999999999999999999999999999999999999996
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.9e-72 Score=577.61 Aligned_cols=313 Identities=30% Similarity=0.479 Sum_probs=281.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCC--ceEEecCCccccccccc
Q 046715 76 SETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDH--NSVTLSPPLALQTSKRI 153 (501)
Q Consensus 76 ~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~v~l~~p~~~~~~~~~ 153 (501)
+|+|+|+|||||+...| ......++.+.+. ++|.+.++ .
T Consensus 1 ~~~i~V~vRirP~~~~e-------------------------------~~~~~~~~~~~~~~~~~i~~~~~--------~ 41 (329)
T cd01366 1 KGNIRVFCRVRPLLPSE-------------------------------STEYSSVISFPDEDGGTIELSKG--------T 41 (329)
T ss_pred CCCEEEEEEcCcCCccc-------------------------------cCCCccEEEEcCCCceEEEEeCC--------C
Confidence 48999999999998766 2344556677664 78877664 1
Q ss_pred cceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhccccc
Q 046715 154 KSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIR 233 (501)
Q Consensus 154 ~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~~ 233 (501)
.....|.||+||+++++|++||+. +.|+|+++++|+|+||||||+|||||||||+|+.+++|||||++++||+.++...
T Consensus 42 ~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~ 120 (329)
T cd01366 42 GKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELK 120 (329)
T ss_pred CCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhh
Confidence 234569999999999999999998 6999999999999999999999999999999999999999999999999998865
Q ss_pred CCCccceEEEEEEEEeeccCCCcceeccCCCC----ccccc-----ccccccCceEEEecCHHHHHHHHHHhhccccccc
Q 046715 234 SSESTRSFYLSIFEIYSERGKGEKLLDLLPDG----VDLCM-----QQSTIKGLQEIIISDAAQAESLIARAMLKRATAM 304 (501)
Q Consensus 234 ~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~----~~~~~-----~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~ 304 (501)
..+..|.|++||+|||+| +++|||.+. ..+.+ .+.++.|++++.|.|++|+.++|..|.++|.++.
T Consensus 121 ~~~~~~~v~~S~~EIy~e-----~v~DLL~~~~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~ 195 (329)
T cd01366 121 EKGWSYTITASMLEIYNE-----TIRDLLATKPAPKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVAS 195 (329)
T ss_pred ccCceEEEEEEEEEEECC-----EeEECCCCCcCCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhccccc
Confidence 557889999999999998 999999874 33443 3567999999999999999999999999999999
Q ss_pred cCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc----C
Q 046715 305 TNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR----K 380 (501)
Q Consensus 305 t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~----~ 380 (501)
|.+|..|||||+||+|+|.+.+... .....|+|+||||||+|+..+.++.+.+++|+..||+||.+|++||. +
T Consensus 196 t~~n~~sSRsH~i~~i~v~~~~~~~---~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~ 272 (329)
T cd01366 196 TNMNEHSSRSHAVFQLKIRGTNLQT---GEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK 272 (329)
T ss_pred ccccCCCCCccEEEEEEEEEEcCCC---CcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC
Confidence 9999999999999999998876442 23456899999999999999999999999999999999999999997 6
Q ss_pred CCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCcc
Q 046715 381 PLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKF 436 (501)
Q Consensus 381 ~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~ 436 (501)
..|+|||+|+||+||+|+|||+++|+||+||||...+++||++||+||+++++|++
T Consensus 273 ~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 273 DSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred CCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccC
Confidence 78999999999999999999999999999999999999999999999999999986
No 21
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=6.3e-73 Score=617.97 Aligned_cols=332 Identities=28% Similarity=0.438 Sum_probs=287.1
Q ss_pred CCCCCCCCCCCCCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecC
Q 046715 64 SQHKSSSATSSPSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSP 143 (501)
Q Consensus 64 ~~~~~~~~~~~~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~ 143 (501)
.++.+++...+.+|||||||||||+...+.. ......+...+...+.+..
T Consensus 301 ~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~------------------------------~~~~~~~~~~~~~~~~~~~ 350 (670)
T KOG0239|consen 301 ERRKLHNEILELKGNIRVFCRVRPLLPSEKQ------------------------------RLQSKVIDTEEQGEVQVDS 350 (670)
T ss_pred HHHHHHHHHHHhhcCceEEEEecCCCccccc------------------------------cccccccccCCcceeEeec
Confidence 4567788888899999999999999986611 1112222222223456655
Q ss_pred CccccccccccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccccc-CCCCCCCchhHH
Q 046715 144 PLALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG-CPREPGMVPIAL 222 (501)
Q Consensus 144 p~~~~~~~~~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G-~~~~~GIipr~~ 222 (501)
|....... ...|.||+||+|.++|++||.. +.|+|+++|+|||+||||||||||||||||.| +++++|||||++
T Consensus 351 ~~~~~~~~----~~~f~fdkVf~p~~sQ~~VF~e-~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral 425 (670)
T KOG0239|consen 351 PDKGDKLE----PQSFKFDKVFGPLASQDDVFEE-VSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRAL 425 (670)
T ss_pred CCCCCCCc----cccceeeeecCCcccHHHHHHH-HHHHHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHH
Confidence 54333221 1259999999999999999999 99999999999999999999999999999999 689999999999
Q ss_pred HHHHhhcccccCCCccceEEEEEEEEeeccCCCcceeccCCCCc---cccc-----ccccccCceEEEecCHHHHHHHHH
Q 046715 223 KRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV---DLCM-----QQSTIKGLQEIIISDAAQAESLIA 294 (501)
Q Consensus 223 ~~LF~~~~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~---~~~~-----~~~~v~~l~~~~v~s~~e~~~ll~ 294 (501)
+.||..+...+. ++.|.+.+||+||||| .|+|||++.. .+.+ ....|.+++.+.|.+.+++..+++
T Consensus 426 ~~lF~~~~~~~~-g~~y~~~~s~~EIYNe-----~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~ 499 (670)
T KOG0239|consen 426 EKLFRTITSLKS-GWKYDKTVSMLEIYNE-----AIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLE 499 (670)
T ss_pred HHHHHHHHhhcc-CceEEeeeehhHHHHH-----HHHHhccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHH
Confidence 999999998665 9999999999999998 9999998763 2222 246899999999999999999999
Q ss_pred HhhccccccccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHH
Q 046715 295 RAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVF 374 (501)
Q Consensus 295 ~g~~~R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L 374 (501)
.|..+|++++|.+|++|||||+||+|+|.......+ ....+.|+|||||||||+.+++..|+|++|+.+||+||++|
T Consensus 500 ~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~---~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~L 576 (670)
T KOG0239|consen 500 IGLSNRSVASTASNERSSRSHLVFRVRIRGINELTG---IRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSAL 576 (670)
T ss_pred HhhccccccccccchhhhccceEEEEEEeccccCcc---cccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhh
Confidence 999999999999999999999999999976643333 23458899999999999999999999999999999999999
Q ss_pred HHHhc----CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccc
Q 046715 375 GLCLR----KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNV 439 (501)
Q Consensus 375 ~~vi~----~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v 439 (501)
|.||. +..||||||||||+||+++|||++||+|+++|||...++.||+.+|+||.|++.+...+.
T Consensus 577 gdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a 645 (670)
T KOG0239|consen 577 GDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSA 645 (670)
T ss_pred HHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceecccc
Confidence 99997 788999999999999999999999999999999999999999999999999999886544
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=2.2e-70 Score=562.09 Aligned_cols=314 Identities=36% Similarity=0.565 Sum_probs=284.1
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCcccccccccccee
Q 046715 78 TLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTSKRIKSEV 157 (501)
Q Consensus 78 ~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~~~~~~~~ 157 (501)
+|+|||||||+...| ..+...|+.++++++|.+.+|... ....+.
T Consensus 1 ~i~V~vRvrP~~~~~-------------------------------~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~ 45 (328)
T cd00106 1 NIRVVVRIRPLNGRE-------------------------------SKSEESCITVDDNKTVTLTPPKDG----RKAGPK 45 (328)
T ss_pred CeEEEEEcCCCCccc-------------------------------ccCCCcEEEECCCCEEEEecCccc----cCcCce
Confidence 689999999998655 456788999999899999987643 223456
Q ss_pred eecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcccccCCCc
Q 046715 158 YQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSSES 237 (501)
Q Consensus 158 ~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~~~~~~ 237 (501)
.|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+.+++|||||++++||+.+........
T Consensus 46 ~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~ 125 (328)
T cd00106 46 SFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNK 125 (328)
T ss_pred EEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999987444467
Q ss_pred cceEEEEEEEEeeccCCCcceeccCCCC---cccccc-----cccccCceEEEecCHHHHHHHHHHhhccccccccCCCC
Q 046715 238 TRSFYLSIFEIYSERGKGEKLLDLLPDG---VDLCMQ-----QSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNN 309 (501)
Q Consensus 238 ~~~v~vS~~EIynE~~~~e~i~DLL~~~---~~~~~~-----~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~ 309 (501)
.+.|++||+|||+| +++|||.+. ..+.++ +.++.|++++.|.|++|++.+|..|.++|.++.|.+|.
T Consensus 126 ~~~v~~S~~Ei~~e-----~v~DLL~~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~ 200 (328)
T cd00106 126 SFSVSVSYLEIYNE-----KVYDLLSPEPPSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNE 200 (328)
T ss_pred eEEEEEEEEEEECC-----EeEECCCCCCCCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCC
Confidence 89999999999998 999999873 444443 46799999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc----CC--CC
Q 046715 310 QSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR----KP--LQ 383 (501)
Q Consensus 310 ~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~----~~--~~ 383 (501)
.|||||+||+|+|.+........ ....|+|+||||||+|+....+..+.++.|+..||+||.+|++||. .. .|
T Consensus 201 ~ssRSH~i~~i~v~~~~~~~~~~-~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ 279 (328)
T cd00106 201 RSSRSHAIFTIHVEQRNTTNDGR-SIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKH 279 (328)
T ss_pred CcCcCcEEEEEEEEEEecCCCCc-cEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999876544332 3456999999999999999999999999999999999999999997 44 89
Q ss_pred cccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcc
Q 046715 384 KHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYM 432 (501)
Q Consensus 384 vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~ 432 (501)
+|||+||||+||+|+|||+++|+||+||+|...+++||++||+||+|+|
T Consensus 280 ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 280 IPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred CCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999985
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=7.3e-70 Score=559.85 Aligned_cols=321 Identities=31% Similarity=0.469 Sum_probs=285.4
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcC--CceEEecCCccccccccccc
Q 046715 78 TLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVND--HNSVTLSPPLALQTSKRIKS 155 (501)
Q Consensus 78 ~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~v~l~~p~~~~~~~~~~~ 155 (501)
+|+|+|||||+...| ...+...++.+.+ +++|++.++.... .
T Consensus 1 ~v~v~vRvrP~~~~e------------------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~ 44 (335)
T smart00129 1 NIRVVVRVRPLNKRE------------------------------KSRKSPSVVPFDDKDGKTLNVNSPKNRK------E 44 (335)
T ss_pred CcEEEEEcCcCCccc------------------------------hhcCCceEEEEcCCCCCEEEEeCCCCCC------C
Confidence 689999999998766 2345667777765 4688887764332 3
Q ss_pred eeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcccccCC
Q 046715 156 EVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSS 235 (501)
Q Consensus 156 ~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~~~~ 235 (501)
...|.||+||+++++|++||+.++.|+|+++++|+|+|||+||+|||||||||+|+.+++|||||++++||+.+.. ...
T Consensus 45 ~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~-~~~ 123 (335)
T smart00129 45 EKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDK-LEE 123 (335)
T ss_pred CeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhh-ccc
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999976 334
Q ss_pred CccceEEEEEEEEeeccCCCcceeccCCCCc-ccccc-----cccccCceEEEecCHHHHHHHHHHhhccccccccCCCC
Q 046715 236 ESTRSFYLSIFEIYSERGKGEKLLDLLPDGV-DLCMQ-----QSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNN 309 (501)
Q Consensus 236 ~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~-~~~~~-----~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~ 309 (501)
+..+.|++||+|||+| .++|||.+.. .+.++ +.++.|++++.|.|++|+.++|..|.++|.+++|.+|.
T Consensus 124 ~~~~~v~~S~~ei~~e-----~v~DLL~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~ 198 (335)
T smart00129 124 GWQFQVKVSYLEIYNE-----KIRDLLNPSPKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNE 198 (335)
T ss_pred CceEEEEEEEEEEECC-----EEEECcCCCCCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCC
Confidence 6789999999999988 9999997543 33333 56899999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc------CCCC
Q 046715 310 QSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR------KPLQ 383 (501)
Q Consensus 310 ~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~------~~~~ 383 (501)
.|||||+||+|+|.+...... ......|+|+||||||+|+....++.+.+++|+..||+||.+|++||. +..|
T Consensus 199 ~ssRsH~i~~l~v~~~~~~~~-~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ 277 (335)
T smart00129 199 ESSRSHAVFTITVESKIKNSS-SGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRH 277 (335)
T ss_pred CCCcceEEEEEEEEEEecCCC-CCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999997643322 234567999999999999999999999999999999999999999997 4669
Q ss_pred cccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccC
Q 046715 384 KHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVED 441 (501)
Q Consensus 384 vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~ 441 (501)
+|||+|+||+||+++|||+++|+||+||||...+++||++||+||+++++|++.|+++
T Consensus 278 ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 278 IPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred CCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 9999999999999999999999999999999999999999999999999999998753
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=2.5e-69 Score=555.76 Aligned_cols=275 Identities=37% Similarity=0.550 Sum_probs=250.3
Q ss_pred ceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccC--CCCCCCchhHHHHHHhhcccc
Q 046715 155 SEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGC--PREPGMVPIALKRIFKGTTKI 232 (501)
Q Consensus 155 ~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~--~~~~GIipr~~~~LF~~~~~~ 232 (501)
....|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+ ..++|||||++++||+.+...
T Consensus 39 ~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~ 118 (335)
T PF00225_consen 39 KEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFAYGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEER 118 (335)
T ss_dssp EEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEEEESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHH
T ss_pred CceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEeeccccccccccccccccccccchhhhHHHHHhhhhccc
Confidence 456799999999999999999999999999999999999999999999999999999 889999999999999999874
Q ss_pred cCC-CccceEEEEEEEEeeccCCCcceeccCCCC-----cccccc-----c-ccccCceEEEecCHHHHHHHHHHhhccc
Q 046715 233 RSS-ESTRSFYLSIFEIYSERGKGEKLLDLLPDG-----VDLCMQ-----Q-STIKGLQEIIISDAAQAESLIARAMLKR 300 (501)
Q Consensus 233 ~~~-~~~~~v~vS~~EIynE~~~~e~i~DLL~~~-----~~~~~~-----~-~~v~~l~~~~v~s~~e~~~ll~~g~~~R 300 (501)
... ...+.|+|||+|||+| +|+|||.+. ..+.++ + .+++|++++.|.+++|++.+|..|.++|
T Consensus 119 ~~~~~~~~~v~vS~~EIy~e-----~v~DLL~~~~~~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R 193 (335)
T PF00225_consen 119 KEKSGYEFSVSVSYLEIYNE-----KVYDLLSPNNSKSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNR 193 (335)
T ss_dssp TTTSTEEEEEEEEEEEEETT-----EEEETTSTTSSSTTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhhhhh-----hhhhhcCccccccccccceeeccccccceeeccccccccccccccccccchhhcc
Confidence 333 4689999999999998 999999877 234443 2 6899999999999999999999999999
Q ss_pred cccccCCCCCCCCceeEEEEEEeeeeccCCCc-cccccceeEeeecCCCccccccCC-cchhhhHHHHHhhhHHHHHHHh
Q 046715 301 ATAMTNSNNQSSRSQCIINLRCAANELSRGDG-VHANDAVLTIIDLAGAEREKRTGN-QGARLLESNFINNTSMVFGLCL 378 (501)
Q Consensus 301 ~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~-~~~~~s~L~~VDLAGsEr~~~~~~-~g~~~~E~~~IN~SL~~L~~vi 378 (501)
.+..|.+|..|||||+||+|+|.+........ .....|+|+||||||+|+..+.++ .+.+++|+..||+||.+|++||
T Consensus 194 ~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi 273 (335)
T PF00225_consen 194 RTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVI 273 (335)
T ss_dssp TCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccceeecceeeeecccccccccccccccccccccceecchhhhhhhhH
Confidence 99999999999999999999999987665543 234679999999999999999886 4788999999999999999999
Q ss_pred c----C--CCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccC
Q 046715 379 R----K--PLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKI 434 (501)
Q Consensus 379 ~----~--~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I 434 (501)
. . ..|+|||+||||+||+|+|||||+|+||+||+|...+++||++||+||+++++|
T Consensus 274 ~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 274 RALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred hhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 7 5 889999999999999999999999999999999999999999999999999987
No 25
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-68 Score=565.29 Aligned_cols=325 Identities=30% Similarity=0.487 Sum_probs=288.8
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCcccccc---
Q 046715 74 SPSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTS--- 150 (501)
Q Consensus 74 ~~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~--- 150 (501)
...+.|.||||+||+.. ..++..|+.+.+..+|.|..|......
T Consensus 28 ~~~d~v~v~~rvrP~~~---------------------------------~~~~~g~l~v~n~~tivL~~P~d~~~~~~~ 74 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSD---------------------------------ASEDEGCLRVINEETIVLETPEDSFARRSV 74 (809)
T ss_pred hhhcchheeEeecCCCC---------------------------------CccccceEEEeccceeEeeCcHHHHhhhcc
Confidence 34699999999999974 346788999999999999988654432
Q ss_pred ccccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcc
Q 046715 151 KRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTT 230 (501)
Q Consensus 151 ~~~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~ 230 (501)
+....++.|.|.+||+++++|.+||+.++.|+|.+++.|.|..+|+||.|||||||||+|++.++||+||+++-||..++
T Consensus 75 n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq 154 (809)
T KOG0247|consen 75 NGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQ 154 (809)
T ss_pred CccceeeEeeeeeecCCCccHHHHHHHHhHHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhh
Confidence 23345778999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccc---------------------------------------------------------------CCCccceEEEEEEE
Q 046715 231 KIR---------------------------------------------------------------SSESTRSFYLSIFE 247 (501)
Q Consensus 231 ~~~---------------------------------------------------------------~~~~~~~v~vS~~E 247 (501)
... ..+..|.|+|||+|
T Consensus 155 ~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~E 234 (809)
T KOG0247|consen 155 GRQAKKPVFKPLRSNLFEIKAEEDALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVE 234 (809)
T ss_pred ceeccCceeccccchHHHHHHHHHHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHH
Confidence 610 13456899999999
Q ss_pred EeeccCCCcceeccCCCCccc------------ccccccccCceEEEecCHHHHHHHHHHhhccccccccCCCCCCCCce
Q 046715 248 IYSERGKGEKLLDLLPDGVDL------------CMQQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQ 315 (501)
Q Consensus 248 IynE~~~~e~i~DLL~~~~~~------------~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH 315 (501)
|||| -|||||.+.... ..+..+|+|+++|.|.+.+||+.+|+.|.++|++++|..|..|||||
T Consensus 235 IYN~-----~iYDLLe~~s~q~~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSH 309 (809)
T KOG0247|consen 235 IYNN-----YIYDLLEDASFQGKLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSH 309 (809)
T ss_pred HHHH-----HHHHhhccccccchhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccc
Confidence 9998 999999664211 12345899999999999999999999999999999999999999999
Q ss_pred eEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc---------CCCCccc
Q 046715 316 CIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR---------KPLQKHF 386 (501)
Q Consensus 316 ~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~---------~~~~vpy 386 (501)
+||+|.+.+..... +......|.|.|||||||||..++++.|.|++|+++||.||++||+||. ...+|||
T Consensus 310 sVFtIkl~q~~~~~-~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPy 388 (809)
T KOG0247|consen 310 SVFTIKLVQAPRSQ-DSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPY 388 (809)
T ss_pred eeEEEEeeeccccc-ccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcc
Confidence 99999998876552 2334567999999999999999999999999999999999999999996 4679999
Q ss_pred CcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccc
Q 046715 387 QNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFD 437 (501)
Q Consensus 387 RdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~ 437 (501)
||||||++++.+|.|..+.+||+||+|.+.+|+|+++.|+||..+..|.+.
T Consensus 389 RdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~ 439 (809)
T KOG0247|consen 389 RDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVA 439 (809)
T ss_pred hHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhccccccc
Confidence 999999999999999999999999999999999999999999999988753
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-66 Score=534.32 Aligned_cols=320 Identities=28% Similarity=0.374 Sum_probs=285.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCccccccccccc
Q 046715 76 SETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTSKRIKS 155 (501)
Q Consensus 76 ~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~~~~~~ 155 (501)
..+|.||||-||++.+| ......++|.+...+.++++.|...-+-.....
T Consensus 207 ehrI~VCVRKRPLnkkE------------------------------~~~keiDvisvps~~~l~vHEpk~kVDLtkYlE 256 (676)
T KOG0246|consen 207 EHRICVCVRKRPLNKKE------------------------------LTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLE 256 (676)
T ss_pred cceEEEEeecCCCCchh------------------------------ccccccceEeccccceEEeeccccccchHHHHh
Confidence 37899999999999988 255677888998899999999987777666667
Q ss_pred eeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCC------CCCCCchhHHHHHHhhc
Q 046715 156 EVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCP------REPGMVPIALKRIFKGT 229 (501)
Q Consensus 156 ~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~------~~~GIipr~~~~LF~~~ 229 (501)
.+.|.||++||+.+++++||..+++|||+.+|+|--+|+||||||||||||||-|+- ...||.-++.+++|..+
T Consensus 257 n~~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L 336 (676)
T KOG0246|consen 257 NQKFRFDYAFDESASNELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLL 336 (676)
T ss_pred hceEEEeeecccccchHHHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHh
Confidence 788999999999999999999999999999999999999999999999999998863 34599999999999998
Q ss_pred ccccCCCccceEEEEEEEEeeccCCCcceeccCCCCccccc-----ccccccCceEEEecCHHHHHHHHHHhhccccccc
Q 046715 230 TKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLCM-----QQSTIKGLQEIIISDAAQAESLIARAMLKRATAM 304 (501)
Q Consensus 230 ~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~~~~-----~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~ 304 (501)
..-.-....+.|+++|||||.. ++||||++...+.+ +++.|-||+|..|.+.+|++.+|+.|+.-|+++.
T Consensus 337 ~~p~Y~~~~l~v~~tFFEIYgG-----KvfDLL~~k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~ 411 (676)
T KOG0246|consen 337 RQPTYRKLDLKVYVTFFEIYGG-----KVYDLLNDKKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQ 411 (676)
T ss_pred cccchhhcceEEEEEEEEEeCc-----chhhhhccccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCc
Confidence 8744445678999999999976 99999999777665 3568999999999999999999999999999999
Q ss_pred cCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccC-CcchhhhHHHHHhhhHHHHHHHhc----
Q 046715 305 TNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTG-NQGARLLESNFINNTSMVFGLCLR---- 379 (501)
Q Consensus 305 t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~-~~g~~~~E~~~IN~SL~~L~~vi~---- 379 (501)
|..|+.|||||+||+|-+.... . ....+++.||||||+||...+. ++.+...||..||+||+||-.||+
T Consensus 412 TsANs~SSRSHAvfQIilr~~~---~---~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~ 485 (676)
T KOG0246|consen 412 TSANSNSSRSHAVFQIILRKHG---E---FKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGR 485 (676)
T ss_pred ccCcccccccceeEeeeeecCC---c---ceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcC
Confidence 9999999999999999985421 1 2345899999999999987764 466777899999999999999998
Q ss_pred CCCCcccCcchhhhhchhccCC-CceEEEEeecCCCCCChHHHHHHHHhHhhcccCcc
Q 046715 380 KPLQKHFQNSLLTRYLRDYLEG-KKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKF 436 (501)
Q Consensus 380 ~~~~vpyRdSkLT~LL~dsLgG-ns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~ 436 (501)
+..|+|||.||||.+|+|||=| |++|+||+||||+....+.||+|||||.|+|....
T Consensus 486 nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv 543 (676)
T KOG0246|consen 486 NKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSV 543 (676)
T ss_pred CCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcC
Confidence 7889999999999999999988 99999999999999999999999999999987653
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-64 Score=549.24 Aligned_cols=312 Identities=30% Similarity=0.391 Sum_probs=275.4
Q ss_pred cCCCCccEEEEcC-CceEEecCCccccccccccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCC
Q 046715 123 KSKHQEDCITVND-HNSVTLSPPLALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSG 201 (501)
Q Consensus 123 ~~~~~~~~i~~~~-~~~v~l~~p~~~~~~~~~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTg 201 (501)
...+...|+.+.+ ..+|++.. ...|+||+||+...+|.++|+.+|+|+++.+|+|||++++||||||
T Consensus 9 ~~~g~~~c~~~~~~~pqv~ig~------------~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtg 76 (913)
T KOG0244|consen 9 EEQGCRRCTEVSPRTPQVAIGK------------DASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTG 76 (913)
T ss_pred HHhcchhhcccCCCCCceeecC------------CcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccC
Confidence 3678888888554 56666643 2458999999999999999999999999999999999999999999
Q ss_pred CCcccccccC----CCCCCCchhHHHHHHhhcccccCCCccceEEEEEEEEeeccCCCcceeccCCCCc---ccccc---
Q 046715 202 SGKTHTIFGC----PREPGMVPIALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV---DLCMQ--- 271 (501)
Q Consensus 202 SGKTyTm~G~----~~~~GIipr~~~~LF~~~~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~---~~~~~--- 271 (501)
|||||||.+. .++.|+|||+++.+|..+...+. ..|.|.|||+|||+| .|+|||.+.. .+.++
T Consensus 77 sgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~--~~f~i~vs~vely~e-----~v~dl~~~~~~~~~i~~~e~~ 149 (913)
T KOG0244|consen 77 SGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES--FVFRITVSFVELYNE-----EVLDLLKPSRLKANIKLREPK 149 (913)
T ss_pred CCceeecccccccccccCCcCcchHHHHHHHHHhhhc--cceeeeeeeeeccch-----hhhhhcChhhhhhceeccccC
Confidence 9999999876 23459999999999999998333 778999999999998 9999997432 12223
Q ss_pred -cccccCceEEEecCHHHHHHHHHHhhccccccccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCcc
Q 046715 272 -QSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAER 350 (501)
Q Consensus 272 -~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr 350 (501)
+..+.|++++.|.+..++...|..|...|++++|+||.+|||||+||++.+.+...... ....+++|+|||||||||
T Consensus 150 g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~--~s~~~sKlhlVDLAGSER 227 (913)
T KOG0244|consen 150 GEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK--RSSFCSKLHLVDLAGSER 227 (913)
T ss_pred CceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc--cchhhhhhheeecccccc
Confidence 37899999999999999999999999999999999999999999999999987543322 224568999999999999
Q ss_pred ccccCCcchhhhHHHHHhhhHHHHHHHhc------CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHH
Q 046715 351 EKRTGNQGARLLESNFINNTSMVFGLCLR------KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYL 424 (501)
Q Consensus 351 ~~~~~~~g~~~~E~~~IN~SL~~L~~vi~------~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~T 424 (501)
.++++++|++++||++||.+|++||+||. +..|+|||||||||||+|+||||+.|+||+||||++.+.+||++|
T Consensus 228 ~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnT 307 (913)
T KOG0244|consen 228 VKKTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNT 307 (913)
T ss_pred ccccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHH
Confidence 99999999999999999999999999997 566999999999999999999999999999999999999999999
Q ss_pred HHhHhhcccCccccccCch----hhhhhhhhccch
Q 046715 425 LRQASPYMKIKFDNVEDSS----NFLCSKRQLPSL 455 (501)
Q Consensus 425 L~fa~ra~~Ik~~~v~~~~----~~~~~~~~~~~l 455 (501)
|+||.||+.|+|++++|.+ .+..+|.+++.|
T Consensus 308 l~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l 342 (913)
T KOG0244|consen 308 LRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPL 342 (913)
T ss_pred HHHhhHHHHhcccccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999985 456677777777
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-59 Score=510.34 Aligned_cols=277 Identities=32% Similarity=0.488 Sum_probs=257.2
Q ss_pred eeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcccccCCC
Q 046715 157 VYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSSE 236 (501)
Q Consensus 157 ~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~~~~~ 236 (501)
..|.||+||++.++|++||+.++.|++++++.||||||||||||||||||||.|..+++||||+++.+||+.+..... +
T Consensus 56 ~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~-~ 134 (568)
T COG5059 56 GTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSM-T 134 (568)
T ss_pred eEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhccc-C
Confidence 459999999999999999999999999999999999999999999999999999999999999999999999988444 7
Q ss_pred ccceEEEEEEEEeeccCCCcceeccCCCCccc------ccccccccCceEEEecCHHHHHHHHHHhhccccccccCCCCC
Q 046715 237 STRSFYLSIFEIYSERGKGEKLLDLLPDGVDL------CMQQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQ 310 (501)
Q Consensus 237 ~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~~------~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~ 310 (501)
..+.|.+||+||||| +++|||.+.... ...++.+.|+++..+.+++|++.+|+.|..+|+++.|.+|..
T Consensus 135 ~~~~v~is~lEiYnE-----k~~DLl~~~~~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ 209 (568)
T COG5059 135 KDFAVSISYLEIYNE-----KIYDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDE 209 (568)
T ss_pred cceeeEeehhHHHhh-----HHHhhccCccccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccc
Confidence 789999999999998 999999776542 334678999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc------CCCCc
Q 046715 311 SSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR------KPLQK 384 (501)
Q Consensus 311 SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~------~~~~v 384 (501)
|||||+||++++.+.....+.. ..++|+||||||||++..++..+.+++|+..||+||.+||+||+ +..|+
T Consensus 210 ssRshsi~~i~~~~~~~~~~~~---~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~i 286 (568)
T COG5059 210 SSRSHSIFQIELASKNKVSGTS---ETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHI 286 (568)
T ss_pred cccceEEEEEEEEEeccCccce---ecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCcc
Confidence 9999999999998876443322 22789999999999999999999999999999999999999997 47899
Q ss_pred ccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCc
Q 046715 385 HFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDS 442 (501)
Q Consensus 385 pyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~ 442 (501)
|||+|||||+|+++|||+|+|+|||||+|...++++|.+||+||.+|+.|++....+.
T Consensus 287 pyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 287 PYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred chhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 9999999999999999999999999999999999999999999999999999888874
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1.4e-49 Score=376.38 Aligned_cols=175 Identities=28% Similarity=0.445 Sum_probs=164.3
Q ss_pred HHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcccccCCCccceEEEEEEEEeeccC
Q 046715 174 VYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSSESTRSFYLSIFEIYSERG 253 (501)
Q Consensus 174 vf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~~~~~~~~~v~vS~~EIynE~~ 253 (501)
||+.++ |+|+.+++|+|+||||||||||||||||+|+++++||||+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 999988 99999999999999999999999999999999999999999987
Q ss_pred CCcceeccCCCCcccccccccccCceEEEecCHHHHHHHHHHhhccccccccCCCCCCCCceeEEEEEEeeeeccCCCcc
Q 046715 254 KGEKLLDLLPDGVDLCMQQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGV 333 (501)
Q Consensus 254 ~~e~i~DLL~~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~ 333 (501)
++++|..|.++|+.+.|.+|..|||||+||+|++.+.........
T Consensus 58 -----------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~ 102 (186)
T cd01363 58 -----------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATE 102 (186)
T ss_pred -----------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCcc
Confidence 778899999999999999999999999999999998765553334
Q ss_pred ccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc----CCCCcccCcchhhhhchhccCCCceEEEEe
Q 046715 334 HANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR----KPLQKHFQNSLLTRYLRDYLEGKKRMTLIL 409 (501)
Q Consensus 334 ~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~----~~~~vpyRdSkLT~LL~dsLgGns~t~~I~ 409 (501)
....++|+||||||||+..+++..+++++|+..||+||++|++||. +..|+||||||||+||+|+|||||+|+||+
T Consensus 103 ~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~ 182 (186)
T cd01363 103 QPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMVA 182 (186)
T ss_pred ceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEEE
Confidence 4567999999999999999999999999999999999999999997 578999999999999999999999999999
Q ss_pred ecCC
Q 046715 410 TVKS 413 (501)
Q Consensus 410 ~isp 413 (501)
||||
T Consensus 183 ~vsP 186 (186)
T cd01363 183 CISP 186 (186)
T ss_pred EeCc
Confidence 9998
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.01 E-value=3.5e-08 Score=108.45 Aligned_cols=203 Identities=20% Similarity=0.168 Sum_probs=134.9
Q ss_pred eeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcccccCCC
Q 046715 157 VYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSSE 236 (501)
Q Consensus 157 ~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~~~~~ 236 (501)
..|.||.+|.....+..++.. ...+++..++| +++||++++|+++||.- ...++..-.+...|......+...
T Consensus 353 ~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~ 425 (568)
T COG5059 353 EEIKFDLSEDRSEIEILVFRE-QSQLSQSSLSG----IFAYMQSLKKETETLKS--RIDLIMKSIISGTFERKKLLKEEG 425 (568)
T ss_pred HHHHhhhhhhhhhhhhHHHHH-HHhhhhhhhhh----HHHHHhhhhhhhhcccc--hhhhhhhhhhhhhhhhhhhhhhhH
Confidence 457899999999999888887 66777888888 99999999999999942 334666666688888777655555
Q ss_pred ccceEEEEEEEEeeccCCCcceeccCCCCcccc---------cccccccCceEEEecCHHHHHHHHHHhhccccccccCC
Q 046715 237 STRSFYLSIFEIYSERGKGEKLLDLLPDGVDLC---------MQQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNS 307 (501)
Q Consensus 237 ~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~~~---------~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~ 307 (501)
+.+...+-+.++|-. .+.++......-. .+......++ .......+..... .+...+....++.
T Consensus 426 ~~~~~~~~~~~~~~~-----~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 498 (568)
T COG5059 426 WKYKSTLQFLRIEID-----RLLLLREEELSKKKTKIHKLNKLRHDLSSLLS-SIPEETSDRVESE-KASKLRSSASTKL 498 (568)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHhcCChHHHHHHHHHHHHHHHHhhh-hcchhhhhhhhhh-hhccchhhcccch
Confidence 555555555555521 2222221111000 0111111111 1111111111111 5667788899999
Q ss_pred CCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhcC
Q 046715 308 NNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLRK 380 (501)
Q Consensus 308 n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~ 380 (501)
|..++++|.+|............ ... ++.|||||+|+. ....-|.++++...+|++|..++.++..
T Consensus 499 n~~~~~~~~~~~~~~~~~~~~~~-----~~~-~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~ 564 (568)
T COG5059 499 NLRSSRSHSKFRDHLNGSNSSTK-----ELS-LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHA 564 (568)
T ss_pred hhhhcccchhhhhcccchhhhhH-----HHH-hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhh
Confidence 99999999999887633221111 111 799999999999 8889999999999999999999988753
No 31
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.46 E-value=0.024 Score=55.12 Aligned_cols=49 Identities=27% Similarity=0.304 Sum_probs=30.8
Q ss_pred eecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 158 YQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 158 ~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
.|+||.-+. ...++..|.. +..+.+.--..+| .+|-||++|+||||-|.
T Consensus 4 ~~tFdnfv~-g~~N~~a~~~-~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 4 KYTFDNFVV-GESNELAYAA-AKAIAENPGERYN-PLFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp T-SCCCS---TTTTHHHHHH-HHHHHHSTTTSSS-EEEEEESTTSSHHHHHH
T ss_pred CCccccCCc-CCcHHHHHHH-HHHHHhcCCCCCC-ceEEECCCCCCHHHHHH
Confidence 389998764 3456666654 4455554212234 47889999999999874
No 32
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.27 E-value=0.059 Score=57.98 Aligned_cols=88 Identities=23% Similarity=0.349 Sum_probs=56.5
Q ss_pred eecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccC---CCCCCCch----hHHHHHHhhcc
Q 046715 158 YQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGC---PREPGMVP----IALKRIFKGTT 230 (501)
Q Consensus 158 ~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~---~~~~GIip----r~~~~LF~~~~ 230 (501)
.|....-|.|.-+|-+ .++.+++.+-+|.-. -.-.|.|||||||||--- -.-|-||- -...+||....
T Consensus 4 ~F~l~s~f~PaGDQP~----AI~~Lv~gi~~g~~~-QtLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 4 PFKLHSPFKPAGDQPE----AIAELVEGIENGLKH-QTLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred ceEeccCCCCCCCcHH----HHHHHHHHHhcCcee-eEEeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 3666677888888864 455677777777543 345699999999999331 11222221 13445666555
Q ss_pred cccCCCccceEEEEEEEEeec
Q 046715 231 KIRSSESTRSFYLSIFEIYSE 251 (501)
Q Consensus 231 ~~~~~~~~~~v~vS~~EIynE 251 (501)
+ --++..+..+||||..|+-
T Consensus 79 ~-fFP~NaVEYFVSYYDYYQP 98 (663)
T COG0556 79 E-FFPENAVEYFVSYYDYYQP 98 (663)
T ss_pred H-hCcCcceEEEeeeccccCc
Confidence 4 2345667889999999964
No 33
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.84 E-value=0.037 Score=55.81 Aligned_cols=30 Identities=33% Similarity=0.778 Sum_probs=28.0
Q ss_pred hhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+.+++..+.+--++.|+.-|+||||||.||
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 667888899999999999999999999999
No 34
>PRK06893 DNA replication initiation factor; Validated
Probab=93.36 E-value=0.06 Score=52.57 Aligned_cols=46 Identities=15% Similarity=0.302 Sum_probs=31.4
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G 210 (501)
++||..+.... ..- +..+.+.+-.+++..++-||++|+||||.+.+
T Consensus 13 ~~fd~f~~~~~-~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 13 ETLDNFYADNN-LLL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred ccccccccCCh-HHH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 68999886542 211 22223333457788899999999999999843
No 35
>PRK06620 hypothetical protein; Validated
Probab=92.34 E-value=0.083 Score=51.18 Aligned_cols=48 Identities=25% Similarity=0.155 Sum_probs=32.4
Q ss_pred eecccccCCCCCchhHHHHhhhhhHHHHHhcCCC---eEEEeccCCCCCcccccc
Q 046715 158 YQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKS---GMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 158 ~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n---~tI~aYGqTgSGKTyTm~ 209 (501)
.|+||..+.. .++...|.. +..+.+. -|+| -.++-||++|+||||.+.
T Consensus 12 ~~tfd~Fvvg-~~N~~a~~~-~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 12 KYHPDEFIVS-SSNDQAYNI-IKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCchhhEec-ccHHHHHHH-HHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 3789887753 445667766 3333331 1343 458999999999999994
No 36
>PRK12377 putative replication protein; Provisional
Probab=91.81 E-value=0.12 Score=51.16 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=35.8
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G 210 (501)
+||........|..++.. +..+++.+..+. ..++-||++|+||||.+.+
T Consensus 72 tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 577655455567777765 667777776654 4688999999999999943
No 37
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.00 E-value=0.11 Score=55.88 Aligned_cols=38 Identities=32% Similarity=0.554 Sum_probs=30.8
Q ss_pred hhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHh
Q 046715 180 NPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFK 227 (501)
Q Consensus 180 ~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~ 227 (501)
...+.++++.-++.|+.-|+||||||.||+. ++.+++.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~----------~L~~ln~ 284 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA----------ALSELNT 284 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH----------HHHHhcC
Confidence 3455677888899999999999999999964 6666665
No 38
>PRK06526 transposase; Provisional
Probab=90.96 E-value=0.14 Score=51.08 Aligned_cols=46 Identities=24% Similarity=0.405 Sum_probs=30.0
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G 210 (501)
.||.-+.+..++..+..-.....++ .+.| |+.||++|+||||.+.+
T Consensus 72 ~fd~~~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 72 EFDFDHQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hccCccCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 4555555555665555443444443 3444 78999999999999954
No 39
>PRK08084 DNA replication initiation factor; Provisional
Probab=90.94 E-value=0.18 Score=49.47 Aligned_cols=45 Identities=13% Similarity=0.391 Sum_probs=30.2
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
|+||.-+.. .+...+.. +..+.. ......++-||++|+||||.+.
T Consensus 19 ~~fd~f~~~--~n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 19 ETFASFYPG--DNDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCccccccC--ccHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 678876643 56666654 333332 2223478999999999999994
No 40
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.92 E-value=0.14 Score=56.90 Aligned_cols=51 Identities=24% Similarity=0.173 Sum_probs=33.5
Q ss_pred eeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccccc
Q 046715 157 VYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 157 ~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G 210 (501)
..|+||..+-.. ++...|.. +..+++..-.++|. ||-||.+|+||||.+..
T Consensus 283 ~~~TFDnFvvG~-sN~~A~aa-a~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIGA-SNRFAHAA-AVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCCC-ccHHHHHH-HHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 347888755323 34445543 44555543346775 89999999999999854
No 41
>PRK09087 hypothetical protein; Validated
Probab=90.72 E-value=0.16 Score=49.60 Aligned_cols=46 Identities=26% Similarity=0.316 Sum_probs=30.6
Q ss_pred eecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 158 YQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 158 ~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
.|+||.-+..+ .+..+|.. ++....-.+..++-||++||||||.+.
T Consensus 17 ~~~~~~Fi~~~-~N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 17 AYGRDDLLVTE-SNRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCChhceeecC-chHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 36888877433 34557763 333222235568999999999999994
No 42
>PRK08116 hypothetical protein; Validated
Probab=90.36 E-value=0.18 Score=50.58 Aligned_cols=49 Identities=22% Similarity=0.292 Sum_probs=34.4
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhc--CCCeEEEeccCCCCCcccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLK--GKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~--G~n~tI~aYGqTgSGKTyTm~ 209 (501)
++||.-. .+..+...|.. +...++.+.+ ..+..++-||.+|+||||.+.
T Consensus 82 ~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 82 STFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred cchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 5677544 35556666655 6666776643 345569999999999999984
No 43
>PRK07952 DNA replication protein DnaC; Validated
Probab=89.97 E-value=0.26 Score=48.76 Aligned_cols=50 Identities=22% Similarity=0.218 Sum_probs=33.6
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G 210 (501)
.+||.-......|..++.. +...++....|. ..++.||.+|+||||.+.+
T Consensus 69 ~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 69 CSFENYRVECEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CccccccCCCchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 4677654334556667666 555555554443 3689999999999999843
No 44
>PRK05642 DNA replication initiation factor; Validated
Probab=89.79 E-value=0.24 Score=48.55 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=27.8
Q ss_pred eecccccCCCCCchhHHHHhhhhhHHHHHhcCC-CeEEEeccCCCCCcccccc
Q 046715 158 YQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGK-SGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 158 ~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~-n~tI~aYGqTgSGKTyTm~ 209 (501)
.|+||.-+.. .+...++. +..+.+.. .+. ...++-||++|+||||-+.
T Consensus 15 ~~tfdnF~~~--~~~~a~~~-~~~~~~~~-~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 15 DATFANYYPG--ANAAALGY-VERLCEAD-AGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred cccccccCcC--ChHHHHHH-HHHHhhcc-ccCCCCeEEEECCCCCCHHHHHH
Confidence 3788887733 23333322 22222211 122 2468899999999999984
No 45
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=89.63 E-value=0.22 Score=53.51 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=32.2
Q ss_pred eecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 158 YQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 158 ~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
.|+||.-+- ..++...|.. +..+.+. -..+|. +|-||++|+||||.+.
T Consensus 101 ~~tFdnFv~-g~~n~~a~~~-~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 101 DYTFENFVV-GPGNSFAYHA-ALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCccccccc-CCchHHHHHH-HHHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 478988664 3455556665 3334433 122665 9999999999999984
No 46
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=88.87 E-value=0.24 Score=45.33 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=23.6
Q ss_pred hhHHHHhhhhhHHHHHhcC-CCeEEEeccCCCCCccccccc
Q 046715 171 QGEVYEKMVNPLVEDFLKG-KSGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 171 Q~evf~~~v~plv~~~l~G-~n~tI~aYGqTgSGKTyTm~G 210 (501)
|.++.+. +++.+-.+ ...-++..++||||||++|..
T Consensus 8 Q~~ai~~----i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 8 QQEAIAR----IINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHH----HHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHH----HHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 4444444 44444343 355667788999999999964
No 47
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=88.66 E-value=0.4 Score=49.73 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=28.8
Q ss_pred ccccCCCCCchhHHHHhhhhhHHHHHhc-CCCeEEEeccCCCCCccccc
Q 046715 161 FSYVFSADSSQGEVYEKMVNPLVEDFLK-GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 161 FD~Vf~~~~sQ~evf~~~v~plv~~~l~-G~n~tI~aYGqTgSGKTyTm 208 (501)
-|++.+.=...++-++. +...+..++. +....++.||++|+|||+++
T Consensus 10 ~~~~p~~l~gRe~e~~~-l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEE-LAKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCCCCCCcHHHHHH-HHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 34444333344444444 2333444444 45668999999999999987
No 48
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=88.55 E-value=0.37 Score=46.30 Aligned_cols=44 Identities=25% Similarity=0.427 Sum_probs=29.7
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
++||.... + .+..+++. ++.++ ..+....|+-||++|+||||.+
T Consensus 12 ~~~~~~~~-~-~~~~~~~~-l~~~~---~~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 12 PTFDNFYA-G-GNAELLAA-LRQLA---AGKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred hhhcCcCc-C-CcHHHHHH-HHHHH---hcCCCCeEEEECCCCCCHHHHH
Confidence 56777663 2 44555554 33332 2456778999999999999988
No 49
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=88.21 E-value=0.34 Score=51.39 Aligned_cols=49 Identities=22% Similarity=0.160 Sum_probs=30.4
Q ss_pred eecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 158 YQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 158 ~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
.|+||.-.- ...+...|.. +..+.+.--..+| .++-||++|+||||.+.
T Consensus 106 ~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 106 KYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 478888432 3455556654 4444443111234 47889999999999984
No 50
>PRK08181 transposase; Validated
Probab=87.93 E-value=0.39 Score=48.26 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=28.3
Q ss_pred cccccCCCCCchhHHHHhh-hhhHHHHHhcCCCeEEEeccCCCCCccccccc
Q 046715 160 GFSYVFSADSSQGEVYEKM-VNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~-v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G 210 (501)
.||.-+.+..+...+..-. +...++ .|.| |+-||++|+||||.+.+
T Consensus 79 ~fd~~~~~~~~~~~~~~L~~~~~~~~---~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 79 SFDFEAVPMVSKAQVMAIAAGDSWLA---KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred hCCccCCCCCCHHHHHHHHHHHHHHh---cCce--EEEEecCCCcHHHHHHH
Confidence 4555555555554444332 222333 4555 89999999999999855
No 51
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=87.81 E-value=0.36 Score=52.02 Aligned_cols=49 Identities=22% Similarity=0.160 Sum_probs=30.8
Q ss_pred eecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 158 YQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 158 ~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
.|+||.-.. ...+...|.. +..+.+.--..+| .++-||++|+||||.+.
T Consensus 118 ~~tfd~fv~-g~~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 118 KYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCccccccc-CCCcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 368887442 2355556655 4444443212344 47889999999999984
No 52
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.73 E-value=0.43 Score=46.15 Aligned_cols=45 Identities=18% Similarity=0.370 Sum_probs=29.1
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
|+||..+.. .+++++.. ++.++.. .+.+..++-||++|+||||.+
T Consensus 15 ~~~d~f~~~--~~~~~~~~-l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 15 PTFDNFVAG--ENAELVAR-LRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred hhhcccccC--CcHHHHHH-HHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 678887732 23334332 4444431 234567899999999999988
No 53
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=87.62 E-value=0.39 Score=41.44 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=19.0
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+...+.......++.+|++|+|||+.+
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 333333334457889999999999877
No 54
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=87.54 E-value=0.38 Score=51.90 Aligned_cols=48 Identities=25% Similarity=0.267 Sum_probs=30.7
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
|+||.-+.. .+++..|.. +..+.+.-=..+| .+|-||.+|+||||.|.
T Consensus 112 ~tFdnFv~g-~~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 112 NTFENFVIG-SSNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred cchhcccCC-CcHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 789886643 345556644 4444432111234 48899999999999994
No 55
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=87.01 E-value=0.59 Score=49.06 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=24.5
Q ss_pred chhHHHHhhhhhHHHHHhc-CCCeEEEeccCCCCCccccc
Q 046715 170 SQGEVYEKMVNPLVEDFLK-GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 170 sQ~evf~~~v~plv~~~l~-G~n~tI~aYGqTgSGKTyTm 208 (501)
.-++-++. +...+..+++ +....++-||++|+|||+++
T Consensus 34 ~Re~e~~~-l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 34 HREEQIEE-LAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CHHHHHHH-HHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 33444444 3333444443 45567899999999999987
No 56
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.90 E-value=0.48 Score=47.24 Aligned_cols=35 Identities=29% Similarity=0.661 Sum_probs=28.8
Q ss_pred HHHhh-hhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 174 VYEKM-VNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 174 vf~~~-v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
-|++. +.++++++.--.-+.|+..|+|||||+.||
T Consensus 109 t~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 109 TFEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred cHHhcCCcHHHHHhhcccCceEEEECCCCCCchhhH
Confidence 34554 667888887778889999999999999998
No 57
>PRK08939 primosomal protein DnaI; Reviewed
Probab=86.77 E-value=0.41 Score=48.98 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=33.1
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcC-CCeEEEeccCCCCCccccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKG-KSGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G-~n~tI~aYGqTgSGKTyTm~G 210 (501)
+||.+-..+..+..++.. +...++....| ..-.++-||++|+||||.+.+
T Consensus 125 tf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 125 SLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred cHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 455443233356667764 46666665543 234699999999999999954
No 58
>PRK08727 hypothetical protein; Validated
Probab=85.94 E-value=0.51 Score=46.17 Aligned_cols=18 Identities=44% Similarity=0.726 Sum_probs=16.0
Q ss_pred eEEEeccCCCCCcccccc
Q 046715 192 GMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm~ 209 (501)
-.|+-||++|+||||.+.
T Consensus 42 ~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999999984
No 59
>PRK06835 DNA replication protein DnaC; Validated
Probab=85.51 E-value=0.49 Score=48.95 Aligned_cols=36 Identities=31% Similarity=0.428 Sum_probs=26.0
Q ss_pred HHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccccc
Q 046715 173 EVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 173 evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G 210 (501)
.+++. +...++.+-.+. -.++-||++|+||||.+.+
T Consensus 167 ~~~~~-~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 167 KILEK-CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHH-HHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 34443 555777766554 5699999999999998843
No 60
>PRK10436 hypothetical protein; Provisional
Probab=85.40 E-value=0.39 Score=51.98 Aligned_cols=28 Identities=36% Similarity=0.674 Sum_probs=23.4
Q ss_pred HHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
.+..++..-++.|+..|+||||||.||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3455666778899999999999999994
No 61
>PF13245 AAA_19: Part of AAA domain
Probab=85.38 E-value=0.46 Score=38.17 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=18.4
Q ss_pred HHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
|..++. -+..++.-|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 444555 34445568999999999983
No 62
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=84.79 E-value=0.7 Score=48.52 Aligned_cols=27 Identities=33% Similarity=0.692 Sum_probs=19.8
Q ss_pred HHHHHhcCC-CeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGK-SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~-n~tI~aYGqTgSGKTyTm 208 (501)
++..++.|. ...++.||.||+|||.|+
T Consensus 32 ~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 32 FLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 344455443 444999999999999987
No 63
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=84.45 E-value=0.48 Score=52.65 Aligned_cols=29 Identities=34% Similarity=0.655 Sum_probs=24.1
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm~G 210 (501)
.+..++..-++.|+..|+||||||.||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 45566777789999999999999999843
No 64
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=84.00 E-value=0.54 Score=51.28 Aligned_cols=28 Identities=36% Similarity=0.754 Sum_probs=23.5
Q ss_pred HHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
.+..++..-++.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4556677778899999999999999994
No 65
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=83.94 E-value=0.55 Score=42.51 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=20.4
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm~G 210 (501)
+++.+.+|.| ++..|+||+|||+....
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 3444556766 77899999999999853
No 66
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=83.82 E-value=0.43 Score=40.70 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.8
Q ss_pred EEeccCCCCCccccccc
Q 046715 194 LAALGPSGSGKTHTIFG 210 (501)
Q Consensus 194 I~aYGqTgSGKTyTm~G 210 (501)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57889999999999954
No 67
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=83.06 E-value=0.74 Score=48.82 Aligned_cols=49 Identities=24% Similarity=0.255 Sum_probs=29.4
Q ss_pred eecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 158 YQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 158 ~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
.|+||.... ..+++-.|.. +.. +...-.+.---||-||.+|+||||.|.
T Consensus 83 ~ytFdnFv~-g~~N~~A~aa-~~~-va~~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 83 KYTFDNFVV-GPSNRLAYAA-AKA-VAENPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCchhheee-CCchHHHHHH-HHH-HHhccCCcCCcEEEECCCCCCHHHHHH
Confidence 478988664 3444444433 222 222222223358999999999999994
No 68
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=82.90 E-value=0.46 Score=45.95 Aligned_cols=15 Identities=47% Similarity=0.922 Sum_probs=13.2
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
+..+|.||||||+|+
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999999
No 69
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=82.72 E-value=0.42 Score=41.44 Aligned_cols=18 Identities=50% Similarity=0.759 Sum_probs=13.3
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
..+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999988
No 70
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=82.61 E-value=0.56 Score=46.67 Aligned_cols=18 Identities=44% Similarity=0.757 Sum_probs=16.1
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
.+.|+..|.||||||.+|
T Consensus 127 ~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCccccchHH
Confidence 567888899999999998
No 71
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=82.37 E-value=0.54 Score=44.79 Aligned_cols=19 Identities=42% Similarity=0.826 Sum_probs=16.4
Q ss_pred CeEEEeccCCCCCcccccc
Q 046715 191 SGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm~ 209 (501)
.+.|+..|+||||||.++.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678899999999999983
No 72
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=82.29 E-value=0.72 Score=47.93 Aligned_cols=28 Identities=29% Similarity=0.657 Sum_probs=21.0
Q ss_pred HHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
.+..++.--.+.|+..|+||||||+||.
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 3444444345789999999999999993
No 73
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=81.95 E-value=0.78 Score=48.27 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.9
Q ss_pred CCeEEEeccCCCCCccccc
Q 046715 190 KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 190 ~n~tI~aYGqTgSGKTyTm 208 (501)
.++.|+..|+||||||+||
T Consensus 148 ~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 4567889999999999999
No 74
>PRK06921 hypothetical protein; Provisional
Probab=81.92 E-value=1.3 Score=44.47 Aligned_cols=35 Identities=43% Similarity=0.631 Sum_probs=23.7
Q ss_pred HHHhhhhhHHHHHhc---CCCeEEEeccCCCCCcccccc
Q 046715 174 VYEKMVNPLVEDFLK---GKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 174 vf~~~v~plv~~~l~---G~n~tI~aYGqTgSGKTyTm~ 209 (501)
++.. +...++++-+ +....++.||++|+||||.+.
T Consensus 98 ~~~~-~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~ 135 (266)
T PRK06921 98 AYEC-AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLT 135 (266)
T ss_pred HHHH-HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHH
Confidence 4433 4555665532 234568999999999999984
No 75
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=81.56 E-value=0.81 Score=47.90 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=18.6
Q ss_pred hcCCCeEEEeccCCCCCccccc
Q 046715 187 LKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 187 l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+.--.+.|+..|+||||||.||
T Consensus 130 ~~~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 130 IAPQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred HhccCCEEEEECCCCCCHHHHH
Confidence 3335689999999999999999
No 76
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=81.39 E-value=0.84 Score=43.44 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=19.5
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..++...+..++..|..||||||+|
T Consensus 10 ~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 10 VRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 34455555556667899999999998
No 77
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=81.39 E-value=0.88 Score=45.53 Aligned_cols=27 Identities=37% Similarity=0.774 Sum_probs=21.3
Q ss_pred HHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
+..++..-.+.|+..|.||||||.||.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 355555556778999999999999993
No 78
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=81.35 E-value=0.62 Score=39.63 Aligned_cols=17 Identities=41% Similarity=0.720 Sum_probs=15.3
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..++-+|++|||||+++
T Consensus 3 ~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 3 EVILIVGPPGSGKTTLA 19 (148)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 46788999999999998
No 79
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=81.25 E-value=1.3 Score=44.16 Aligned_cols=41 Identities=37% Similarity=0.584 Sum_probs=29.1
Q ss_pred CCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccccc
Q 046715 167 ADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 167 ~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G 210 (501)
....+..+|.. +..+++.+-+|.| ++-||+.|+||||...+
T Consensus 84 ~~~~~~~~l~~-~~~~~~~~~~~~n--l~l~G~~G~GKThLa~A 124 (254)
T COG1484 84 QPGIDKKALED-LASLVEFFERGEN--LVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CcchhHHHHHH-HHHHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence 34466777766 6666666555544 67799999999999854
No 80
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=80.73 E-value=1.1 Score=44.23 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=18.3
Q ss_pred HHhcCCCeEEEeccCCCCCccccc
Q 046715 185 DFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 185 ~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
..++.....++.+|+.|+|||+.+
T Consensus 37 ~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 37 YGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHH
Confidence 334444567888999999999877
No 81
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=80.69 E-value=1.2 Score=46.74 Aligned_cols=37 Identities=22% Similarity=0.485 Sum_probs=28.2
Q ss_pred CCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 168 DSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 168 ~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..|+.+|+.++..+.. .....+|.-|+-|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHH
Confidence 45799999996555433 34456788999999999998
No 82
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=80.00 E-value=0.9 Score=43.12 Aligned_cols=30 Identities=37% Similarity=0.512 Sum_probs=21.6
Q ss_pred hhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+.+.+-.|.+.+++.||+.|+|||+.|
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 344444444677889999999999999977
No 83
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=79.66 E-value=0.6 Score=48.71 Aligned_cols=38 Identities=21% Similarity=0.501 Sum_probs=28.3
Q ss_pred eEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcccccCCCccceEEEEEEEEee
Q 046715 192 GMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSSESTRSFYLSIFEIYS 250 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~~~~~~~~~v~vS~~EIyn 250 (501)
+-|+-||.+||||||++ +.+|+..+. -.|++.++|-|.
T Consensus 31 S~~~iyG~sgTGKT~~~--------------r~~l~~~n~-------~~vw~n~~ecft 68 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLV--------------RQLLRKLNL-------ENVWLNCVECFT 68 (438)
T ss_pred eeEEEeccCCCchhHHH--------------HHHHhhcCC-------cceeeehHHhcc
Confidence 34689999999999987 556665432 358888888883
No 84
>PRK09183 transposase/IS protein; Provisional
Probab=79.65 E-value=1.2 Score=44.41 Aligned_cols=44 Identities=25% Similarity=0.512 Sum_probs=26.3
Q ss_pred ccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 161 FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
||.-|.+..+...+..-..-.. +-.|.| ++-+|++|+||||.+.
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~~--v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNEN--IVLLGPSGVGKTHLAI 120 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCCe--EEEEeCCCCCHHHHHH
Confidence 5555666655544433211112 224554 5679999999999884
No 85
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=79.51 E-value=1 Score=52.07 Aligned_cols=27 Identities=33% Similarity=0.536 Sum_probs=20.2
Q ss_pred HHHHHh--cCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFL--KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l--~G~n~tI~aYGqTgSGKTyTm 208 (501)
++..++ .|-+.+||.||++|+|||.|+
T Consensus 770 fL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 770 FLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 334444 345567889999999999998
No 86
>PF12846 AAA_10: AAA-like domain
Probab=79.33 E-value=0.75 Score=45.66 Aligned_cols=19 Identities=37% Similarity=0.443 Sum_probs=16.1
Q ss_pred CeEEEeccCCCCCcccccc
Q 046715 191 SGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm~ 209 (501)
|.-++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999999983
No 87
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=79.32 E-value=0.8 Score=42.09 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=13.3
Q ss_pred hcCCCeEEEeccCCCCCccccc
Q 046715 187 LKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 187 l~G~n~tI~aYGqTgSGKTyTm 208 (501)
..|....++.+|..|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 4566778999999999999986
No 88
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=78.80 E-value=1.4 Score=47.41 Aligned_cols=49 Identities=22% Similarity=0.275 Sum_probs=31.3
Q ss_pred eecccccCCCCCchhHHHHhhhhhHHHHH--hcC--CCeEEEeccCCCCCcccccc
Q 046715 158 YQGFSYVFSADSSQGEVYEKMVNPLVEDF--LKG--KSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 158 ~f~FD~Vf~~~~sQ~evf~~~v~plv~~~--l~G--~n~tI~aYGqTgSGKTyTm~ 209 (501)
.|+||.-+- ..+++..|.. +..+.+.. ..| || -++-||++|+||||.+.
T Consensus 107 ~~tFdnFv~-g~~N~~a~~~-a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 107 LMTFANFLV-TPENDLPHRI-LQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQ 159 (445)
T ss_pred cccccceee-CCcHHHHHHH-HHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHH
Confidence 378988664 3355555544 44454432 223 44 36789999999999984
No 89
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=78.38 E-value=1 Score=46.32 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=20.2
Q ss_pred hhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 180 NPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 180 ~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
..++..++.+. ..|+..|.||||||++|
T Consensus 138 ~~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 138 REAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 34566666653 45666799999999877
No 90
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=78.25 E-value=1.3 Score=41.56 Aligned_cols=19 Identities=42% Similarity=0.676 Sum_probs=15.9
Q ss_pred eEEEeccCCCCCccccccc
Q 046715 192 GMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm~G 210 (501)
-.++-+|++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 4589999999999999854
No 91
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=78.25 E-value=0.9 Score=46.32 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=21.1
Q ss_pred hhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 180 NPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 180 ~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
..++..++.+ ...|+..|.||||||.+|
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 3455556654 456789999999999998
No 92
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=76.78 E-value=7.4 Score=38.41 Aligned_cols=52 Identities=27% Similarity=0.299 Sum_probs=32.5
Q ss_pred ecCHHHHHHHHHHhhccccccccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCcc
Q 046715 283 ISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAER 350 (501)
Q Consensus 283 v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr 350 (501)
+.+++++...+..+... .... ...-|.-++.|++.... .-.|+||||+|-.+
T Consensus 86 ~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p~----------~~~ltLIDlPGl~~ 137 (240)
T smart00053 86 FTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSPH----------VLNLTLIDLPGITK 137 (240)
T ss_pred cCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCCC----------CCceEEEeCCCccc
Confidence 46788888888766542 1111 12335667888775422 24599999999854
No 93
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=76.63 E-value=0.92 Score=44.81 Aligned_cols=45 Identities=20% Similarity=0.402 Sum_probs=31.2
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeE-EEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGM-LAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~t-I~aYGqTgSGKTyTm 208 (501)
..+|...+-+...+.+.+.+ ..+++|..+- ++.||..|+|||.++
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlV 69 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLV 69 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHH
Confidence 35677776665555555542 5677777443 667999999999887
No 94
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=76.52 E-value=0.99 Score=43.07 Aligned_cols=17 Identities=53% Similarity=0.880 Sum_probs=14.8
Q ss_pred EEEeccCCCCCcccccc
Q 046715 193 MLAALGPSGSGKTHTIF 209 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm~ 209 (501)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 46788999999999993
No 95
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=76.48 E-value=2.7 Score=47.61 Aligned_cols=84 Identities=26% Similarity=0.434 Sum_probs=54.3
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcccccCCCcc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSSEST 238 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~~~~~~~ 238 (501)
+.|+.+......+.-.+.. ..+.+..++++++.. +|++|++.+.....|++-+....++........ ..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 96 (670)
T KOG0239|consen 28 FELARVYSPSVGQPSLFSD-VQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFKELIDLANSDKT--SN 96 (670)
T ss_pred cCccccccccccccccCCc-cccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhhhcccccccCCC--ch
Confidence 5666666554444333433 444455666666554 899999999998889988888888876544111 11
Q ss_pred ceEEEEEEEEeeccCCCcceeccCCC
Q 046715 239 RSFYLSIFEIYSERGKGEKLLDLLPD 264 (501)
Q Consensus 239 ~~v~vS~~EIynE~~~~e~i~DLL~~ 264 (501)
.++.|.+ .+.|++..
T Consensus 97 ------~~~~~~~-----~~~~~~~~ 111 (670)
T KOG0239|consen 97 ------VVEAYNE-----RLRDLLSE 111 (670)
T ss_pred ------hHHHHHH-----HHhhhccc
Confidence 5677766 77777754
No 96
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=75.59 E-value=2.3 Score=48.10 Aligned_cols=87 Identities=23% Similarity=0.392 Sum_probs=52.8
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCC---CCCCCch----hHHHHHHhhccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCP---REPGMVP----IALKRIFKGTTK 231 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~---~~~GIip----r~~~~LF~~~~~ 231 (501)
|....=|.|.-+|..-|+. +++.+-+|...- ..+|.||||||+||-.-- ..+-||- .....|+..+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 3444557888889887776 455555664222 378999999999985421 1222221 133455555444
Q ss_pred ccCCCccceEEEEEEEEeec
Q 046715 232 IRSSESTRSFYLSIFEIYSE 251 (501)
Q Consensus 232 ~~~~~~~~~v~vS~~EIynE 251 (501)
.- .+..+.++||||..|.-
T Consensus 77 f~-p~~~V~~f~sy~d~y~p 95 (655)
T TIGR00631 77 FF-PENAVEYFVSYYDYYQP 95 (655)
T ss_pred hC-CCCeEEEEeeecccCCc
Confidence 21 23447788999998864
No 97
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=75.58 E-value=2.1 Score=43.61 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=19.1
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+...+..+.---.+-||+.|+|||.|.
T Consensus 48 L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 48 LKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred HHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 333333434445788999999999998
No 98
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=75.43 E-value=1.1 Score=38.62 Aligned_cols=15 Identities=40% Similarity=0.691 Sum_probs=13.5
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999977
No 99
>PF13479 AAA_24: AAA domain
Probab=75.18 E-value=1.3 Score=42.56 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=16.8
Q ss_pred CeEEEeccCCCCCccccccc
Q 046715 191 SGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm~G 210 (501)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45689999999999998744
No 100
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=75.15 E-value=1.2 Score=38.12 Aligned_cols=16 Identities=38% Similarity=0.688 Sum_probs=14.3
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
+|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999877
No 101
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=74.48 E-value=1.8 Score=38.48 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=20.3
Q ss_pred eEEEec-cCCCCCcccccccCCCCCCCchhHHHHHHhh
Q 046715 192 GMLAAL-GPSGSGKTHTIFGCPREPGMVPIALKRIFKG 228 (501)
Q Consensus 192 ~tI~aY-GqTgSGKTyTm~G~~~~~GIipr~~~~LF~~ 228 (501)
..|+++ |.||+||||+- ..+.+.||..
T Consensus 53 pLVlSfHG~tGtGKn~v~----------~liA~~ly~~ 80 (127)
T PF06309_consen 53 PLVLSFHGWTGTGKNFVS----------RLIAEHLYKS 80 (127)
T ss_pred CEEEEeecCCCCcHHHHH----------HHHHHHHHhc
Confidence 356655 99999999986 4567778863
No 102
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=72.99 E-value=2.4 Score=43.18 Aligned_cols=41 Identities=32% Similarity=0.405 Sum_probs=26.5
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.||.+.+ |+++.+. +..++ -.|....++-||++|+|||+++
T Consensus 13 ~~~~~~g----~~~~~~~-L~~~~---~~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 13 LLEDILG----QDEVVER-LSRAV---DSPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred cHHHhcC----CHHHHHH-HHHHH---hCCCCceEEEECCCCCCHHHHH
Confidence 5788775 4554444 22222 2344335788999999999988
No 103
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=72.92 E-value=2.2 Score=40.10 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=20.3
Q ss_pred hhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
..+++..++.. ...+.-.|++|||||.+|
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 34455555543 345777899999999887
No 104
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=72.66 E-value=1.8 Score=40.94 Aligned_cols=17 Identities=41% Similarity=0.692 Sum_probs=12.8
Q ss_pred EEEeccCCCCCcccccc
Q 046715 193 MLAALGPSGSGKTHTIF 209 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm~ 209 (501)
..+..|+.|||||+|+.
T Consensus 19 ~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp -EEEE-STTSSHHHHHH
T ss_pred CEEEECCCCCChHHHHH
Confidence 45668999999999884
No 105
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=72.08 E-value=2.1 Score=44.24 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=22.0
Q ss_pred hhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..++-.++.+. +.|+..|.||||||+++
T Consensus 162 ~a~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 162 AAKFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 444555555555 77899999999999887
No 106
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=72.08 E-value=1.8 Score=44.64 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=19.9
Q ss_pred hHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 181 PLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 181 plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.++..++.+. ..|+..|.||||||.+|
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 4455555432 35788999999999998
No 107
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=71.73 E-value=3.2 Score=41.94 Aligned_cols=37 Identities=30% Similarity=0.467 Sum_probs=27.0
Q ss_pred HhhhhhHHHHHhcCCCeEEEeccCCCCCccccc------ccCCC
Q 046715 176 EKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI------FGCPR 213 (501)
Q Consensus 176 ~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm------~G~~~ 213 (501)
...+.||+ ..+.--+..+-.||+|++|||.++ +|++.
T Consensus 179 ~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~~~a~Sv~G~p~ 221 (286)
T PF06048_consen 179 AAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTALQLAASVWGNPD 221 (286)
T ss_pred HHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHHHHhhhhCcCch
Confidence 34455666 456666778889999999999876 66654
No 108
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=71.41 E-value=2.6 Score=38.28 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=14.9
Q ss_pred eEEEeccCCCCCccccccc
Q 046715 192 GMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm~G 210 (501)
..++..|++|||||.++..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 25 RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred CcEEEECCCCCchhHHHHH
Confidence 3457788999999998843
No 109
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=71.17 E-value=2.2 Score=44.23 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=21.2
Q ss_pred hhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..++..++.+. ..|+..|.||||||.+|
T Consensus 149 ~~~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 149 IKEFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 445566565443 44788899999999998
No 110
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=70.96 E-value=11 Score=42.71 Aligned_cols=10 Identities=10% Similarity=-0.077 Sum_probs=4.1
Q ss_pred hHHHHHHHhc
Q 046715 370 TSMVFGLCLR 379 (501)
Q Consensus 370 SL~~L~~vi~ 379 (501)
+...|.+++.
T Consensus 909 ~ik~Le~dlk 918 (1102)
T KOG1924|consen 909 QIKKLERDLK 918 (1102)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 111
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=70.63 E-value=1.7 Score=45.91 Aligned_cols=50 Identities=24% Similarity=0.335 Sum_probs=30.6
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHH-Hhc--C--CCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVED-FLK--G--KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~-~l~--G--~n~tI~aYGqTgSGKTyTm 208 (501)
+.||.|.+-+..-+++.+.+..|+... .+. | ....|+-||++|+|||+..
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 456766665544455555544444432 222 2 2346889999999999876
No 112
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=70.38 E-value=3.9 Score=43.33 Aligned_cols=18 Identities=44% Similarity=0.783 Sum_probs=16.3
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...|+.+|+||+|||.|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467889999999999999
No 113
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=70.16 E-value=2.5 Score=44.05 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=20.8
Q ss_pred hhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
...++..++.+ ...|+..|+||||||.+|
T Consensus 151 ~~~~l~~~v~~-~~nilI~G~tGSGKTTll 179 (344)
T PRK13851 151 LEAFLHACVVG-RLTMLLCGPTGSGKTTMS 179 (344)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCccHHHHH
Confidence 44455555542 345788999999999988
No 114
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=69.66 E-value=4.1 Score=41.07 Aligned_cols=17 Identities=47% Similarity=0.856 Sum_probs=14.4
Q ss_pred EEEeccCCCCCcccccc
Q 046715 193 MLAALGPSGSGKTHTIF 209 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm~ 209 (501)
.|+..|+||+|||+|+.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56666999999999994
No 115
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=69.39 E-value=3.1 Score=42.20 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=16.8
Q ss_pred cCC-CeEEEeccCCCCCccccc
Q 046715 188 KGK-SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~-n~tI~aYGqTgSGKTyTm 208 (501)
.|. ...++-||++|+|||+.+
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHH
Confidence 453 456777999999999987
No 116
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=68.85 E-value=1.9 Score=45.04 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=30.0
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHH-Hhc--CC--CeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVED-FLK--GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~-~l~--G~--n~tI~aYGqTgSGKTyTm 208 (501)
+.||.+.+-+..-+++.+.+..|+... .+. |. ...|+-||++|+|||++.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 467777765544445544443343321 121 21 345889999999999887
No 117
>PRK06547 hypothetical protein; Provisional
Probab=68.84 E-value=3.6 Score=38.35 Aligned_cols=29 Identities=28% Similarity=0.241 Sum_probs=19.7
Q ss_pred hhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 180 NPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 180 ~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
..++..+..+.---|..+|.+|||||+.-
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 34445555444555666799999999876
No 118
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=68.63 E-value=1.8 Score=41.12 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=13.0
Q ss_pred EEEeccCCCCCcccccc
Q 046715 193 MLAALGPSGSGKTHTIF 209 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm~ 209 (501)
-++.+|.||||||.+|.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 57889999999999983
No 119
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=68.54 E-value=3.2 Score=38.94 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=17.3
Q ss_pred HHHhcCCCeEEEeccCCCCCccccc
Q 046715 184 EDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 184 ~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+.+++|.| ++..++||+|||.+.
T Consensus 31 ~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 31 PPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHhcCCc--EEEECCCCCcHHHHH
Confidence 34445777 577899999999873
No 120
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=68.48 E-value=2.8 Score=42.28 Aligned_cols=38 Identities=29% Similarity=0.342 Sum_probs=24.1
Q ss_pred chhHHHHhhhhhHHHHHhc--CCCeEEEeccCCCCCccccc
Q 046715 170 SQGEVYEKMVNPLVEDFLK--GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 170 sQ~evf~~~v~plv~~~l~--G~n~tI~aYGqTgSGKTyTm 208 (501)
.|+++.+. +..++..... +....++-||+.|+|||+..
T Consensus 8 G~~~~~~~-l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 8 GQEKVKEQ-LQLFIEAAKMRQEALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CHHHHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 46666665 4444443322 22234677999999999887
No 121
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=68.26 E-value=1.7 Score=37.03 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEeccCCCCCcccccccCCCCCCCchhHHHHHHhhc
Q 046715 194 LAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGT 229 (501)
Q Consensus 194 I~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~ 229 (501)
|+-||++|.|||+.+ ..++.+|.+.+
T Consensus 1 I~i~G~~G~GKS~l~----------~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA----------KELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHH----------HHHHHHHHHHh
Confidence 578999999999988 34566666655
No 122
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=68.21 E-value=2.3 Score=42.52 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=16.3
Q ss_pred CCCeEEEeccCCCCCcccccc
Q 046715 189 GKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 189 G~n~tI~aYGqTgSGKTyTm~ 209 (501)
-.++.++..|..|||||+||.
T Consensus 11 ~~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 11 STEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp S-SSEEEEEE-TTSSHHHHHH
T ss_pred CCCCCEEEEeCCCCCchHHHH
Confidence 367788888999999999993
No 123
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=67.91 E-value=2.4 Score=44.19 Aligned_cols=43 Identities=28% Similarity=0.417 Sum_probs=29.6
Q ss_pred eecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 158 YQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 158 ~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|.|+.|-+ |+++=.. ++..+.+-.-+.|+.+|.+||||||.+
T Consensus 13 ~~pf~~ivG----q~~~k~a----l~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 13 VFPFTAIVG----QEEMKLA----LILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCHHHHhC----hHHHHHH----HHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 588999987 4444333 444444433345889999999999998
No 124
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=67.90 E-value=3.1 Score=40.06 Aligned_cols=19 Identities=32% Similarity=0.635 Sum_probs=14.0
Q ss_pred CCeEEEeccCCCCCccccc
Q 046715 190 KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 190 ~n~tI~aYGqTgSGKTyTm 208 (501)
.+-.+++.|+.||||||.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 4558999999999999877
No 125
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=67.84 E-value=2.3 Score=39.62 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=15.0
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46888999999999976
No 126
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=67.51 E-value=2 Score=45.58 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=34.3
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHH-HHhc--C--CCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVE-DFLK--G--KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~-~~l~--G--~n~tI~aYGqTgSGKTyTm 208 (501)
.+|+.|.+.+..-+++-+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 57888888666556666555555543 2333 2 2456889999999999987
No 127
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=67.49 E-value=2.3 Score=37.38 Aligned_cols=16 Identities=38% Similarity=0.717 Sum_probs=14.0
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|..|||||+..
T Consensus 1 lii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3788999999999876
No 128
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=67.29 E-value=3.1 Score=44.79 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=18.5
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|.| +++.++||||||.+.
T Consensus 35 i~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 35 LPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHhcCCC--EEEECCCCCcHHHHH
Confidence 345668888 677889999999763
No 129
>PRK10536 hypothetical protein; Provisional
Probab=66.98 E-value=3.5 Score=41.16 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=28.4
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
|.|..|-+-+..|...... +.+ +..++..|+.||||||..
T Consensus 52 ~~~~~i~p~n~~Q~~~l~a--------l~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKA--------IES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred cCCccccCCCHHHHHHHHH--------Hhc--CCeEEEECCCCCCHHHHH
Confidence 5666677766666654442 223 348899999999999987
No 130
>PTZ00424 helicase 45; Provisional
Probab=66.83 E-value=3.1 Score=43.63 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=19.1
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+..+++|.|. +..++||||||.+.
T Consensus 58 ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 58 GIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 44557789885 46789999999765
No 131
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=66.78 E-value=3.6 Score=46.27 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=29.6
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.||.++++ ...... ++..+..++...++-||++|+|||+..
T Consensus 152 ~~~~iiGq----s~~~~~----l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 152 AFSEIVGQ----ERAIKA----LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cHHhceeC----cHHHHH----HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 68888753 334333 445556677778899999999999876
No 132
>PHA00729 NTP-binding motif containing protein
Probab=66.49 E-value=4.2 Score=39.77 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=22.1
Q ss_pred hhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 179 VNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 179 v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
+..+++.+..|--..|+.+|.+|+||||...
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 3445555554333579999999999998773
No 133
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=65.92 E-value=3.6 Score=45.23 Aligned_cols=30 Identities=43% Similarity=0.740 Sum_probs=23.6
Q ss_pred hhhHHHHHhcCCC--eEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKGKS--GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G~n--~tI~aYGqTgSGKTyTm 208 (501)
|+..++..+.|.. ..++.+|++|+|||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 6666777666653 46788999999999998
No 134
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=65.78 E-value=6.8 Score=38.39 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=27.0
Q ss_pred CCCchhHHHHhhhhhHHHHHhc-C-CCeEEEeccCCCCCccccc
Q 046715 167 ADSSQGEVYEKMVNPLVEDFLK-G-KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 167 ~~~sQ~evf~~~v~plv~~~l~-G-~n~tI~aYGqTgSGKTyTm 208 (501)
+-..|+++-.. ...+++.+.. | .=..++-||+.|.|||..-
T Consensus 25 efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 25 EFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp CS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred HccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 33458888876 7777877753 2 2345788999999998654
No 135
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=65.66 E-value=3.9 Score=46.62 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=25.8
Q ss_pred HHHHhhhhhHHHHH-hcCCCeEEEeccCCCCCccccc
Q 046715 173 EVYEKMVNPLVEDF-LKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 173 evf~~~v~plv~~~-l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.||.. +......+ -.+.|-||+..|.+|||||.+.
T Consensus 67 Hif~~-a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAV-AQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHH-HHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchh-hhcccccccccccccceeeccccccccccch
Confidence 35654 33333444 3689999999999999999885
No 136
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=65.14 E-value=2.3 Score=37.45 Aligned_cols=15 Identities=40% Similarity=0.751 Sum_probs=13.7
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999987
No 137
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=64.72 E-value=2.6 Score=36.07 Aligned_cols=15 Identities=40% Similarity=0.539 Sum_probs=13.3
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999877
No 138
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=64.06 E-value=5.3 Score=42.31 Aligned_cols=38 Identities=24% Similarity=0.517 Sum_probs=24.5
Q ss_pred hhHHHHhhhhhHHHHHhcC----CCeEEEeccCCCCCccccc
Q 046715 171 QGEVYEKMVNPLVEDFLKG----KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 171 Q~evf~~~v~plv~~~l~G----~n~tI~aYGqTgSGKTyTm 208 (501)
+...|.+....++..+.+- ...-|.-.|+||-|||+|+
T Consensus 179 ~~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 179 DLRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTL 220 (407)
T ss_pred hhhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHH
Confidence 3444555444444444443 2556667799999999999
No 139
>PRK13342 recombination factor protein RarA; Reviewed
Probab=63.73 E-value=4.1 Score=43.39 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=27.1
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.||.+.+ |+.+... ...+...+-.+.-..++-||+.|+|||+..
T Consensus 10 ~l~d~vG----q~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 10 TLDEVVG----QEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred CHHHhcC----cHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 4666665 4444433 222333333555556777999999999877
No 140
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=63.69 E-value=4.1 Score=43.48 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=19.6
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+..+++|.| +++.++||||||.+.
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3455668887 788899999999863
No 141
>PRK13764 ATPase; Provisional
Probab=63.41 E-value=3.7 Score=45.88 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=16.4
Q ss_pred CeEEEeccCCCCCcccccc
Q 046715 191 SGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm~ 209 (501)
...|+..|+||||||+++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4458999999999999994
No 142
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=62.83 E-value=5.2 Score=45.58 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=15.6
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
|-.++.+|+||||||+-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 556788999999999877
No 143
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=62.60 E-value=3.4 Score=39.17 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=15.1
Q ss_pred CCCeEEEeccCCCCCccccc
Q 046715 189 GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 189 G~n~tI~aYGqTgSGKTyTm 208 (501)
.....+|..|+.|||||+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHH
Confidence 34567889999999999887
No 144
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=62.40 E-value=4.3 Score=43.20 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=18.8
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+..+++|.| |++-++||||||.+.
T Consensus 38 aip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCc--EEEECCCCchHHHHH
Confidence 3455778988 456679999999764
No 145
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=62.15 E-value=4.6 Score=40.59 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=21.4
Q ss_pred HHhcCCCeEEEeccCCCCCccccc
Q 046715 185 DFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 185 ~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
++-+||.--|+|.|.||.|||..|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHH
Confidence 455899999999999999999876
No 146
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=61.91 E-value=3.5 Score=43.46 Aligned_cols=18 Identities=50% Similarity=0.922 Sum_probs=15.8
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...++-+|+||+|||+|+
T Consensus 137 g~ii~lvGptGvGKTTti 154 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT 154 (374)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457778999999999999
No 147
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=61.86 E-value=2.9 Score=42.67 Aligned_cols=17 Identities=35% Similarity=0.659 Sum_probs=14.0
Q ss_pred EEEeccCCCCCcccccc
Q 046715 193 MLAALGPSGSGKTHTIF 209 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm~ 209 (501)
-...||+|||||++.+-
T Consensus 89 I~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 34679999999999873
No 148
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=61.41 E-value=3.5 Score=41.20 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.2
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
--.|+-||++|+|||++-
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 456889999999999875
No 149
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=61.24 E-value=7.2 Score=40.14 Aligned_cols=18 Identities=39% Similarity=0.558 Sum_probs=15.1
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...|...|++|+|||.|+
T Consensus 114 ~~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTI 131 (318)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 346667799999999999
No 150
>PRK04195 replication factor C large subunit; Provisional
Probab=61.19 E-value=6.3 Score=42.88 Aligned_cols=44 Identities=34% Similarity=0.510 Sum_probs=29.4
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCC-CeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGK-SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~-n~tI~aYGqTgSGKTyTm 208 (501)
.|+.+.+ |+++-+. +..++.....|. ...++.||+.|+|||++.
T Consensus 12 ~l~dlvg----~~~~~~~-l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 12 TLSDVVG----NEKAKEQ-LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CHHHhcC----CHHHHHH-HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 3666664 3333333 555566655665 567889999999999887
No 151
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=61.04 E-value=5.4 Score=45.31 Aligned_cols=31 Identities=35% Similarity=0.426 Sum_probs=21.7
Q ss_pred hhhHHHHHhc-----CCCeEEEeccCCCCCccccccc
Q 046715 179 VNPLVEDFLK-----GKSGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 179 v~plv~~~l~-----G~n~tI~aYGqTgSGKTyTm~G 210 (501)
+..+++++.+ |.+..++.. +||||||+||..
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 5566666665 445555444 899999999954
No 152
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=60.51 E-value=5.3 Score=43.09 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=19.0
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|.| +++-.+||||||.+.
T Consensus 32 i~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 32 IPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 455678888 677889999999874
No 153
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=60.32 E-value=4.8 Score=48.42 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=21.7
Q ss_pred hhhHHHHHhcCCCeEEEeccCCCCCccccccc
Q 046715 179 VNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 179 v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G 210 (501)
+..+++.+-+|....++. .+||||||+||++
T Consensus 422 I~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 422 IQAVEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHHhccCCeEEE-eCCCCCHHHHHHH
Confidence 444555555676655544 8999999999865
No 154
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.88 E-value=5.8 Score=41.50 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=27.3
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcC-CCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKG-KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G-~n~tI~aYGqTgSGKTyTm 208 (501)
.||.|.+ |+.+-+. +...+-.| ...+++-||+.|+|||.+.
T Consensus 14 ~~~~iiG----q~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDIIG----QKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhccC----hHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 5788775 4444433 33333344 4567899999999999876
No 155
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=59.72 E-value=12 Score=43.25 Aligned_cols=25 Identities=36% Similarity=0.727 Sum_probs=20.4
Q ss_pred HHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
+..+.+|.|+.|.| +||||||-+-|
T Consensus 31 ~~~i~~G~nvLiiA--PTGsGKTeAAf 55 (814)
T COG1201 31 IPEIHSGENVLIIA--PTGSGKTEAAF 55 (814)
T ss_pred HHHHhCCCceEEEc--CCCCChHHHHH
Confidence 45567999998876 89999998753
No 156
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=59.65 E-value=8.8 Score=37.92 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=19.2
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
.||..-|+..||+|.|||..+
T Consensus 43 ~GF~FNIMVVgqSglgkstli 63 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLI 63 (336)
T ss_pred ccCceEEEEEecCCCCchhhH
Confidence 799999999999999999654
No 157
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=59.54 E-value=5.6 Score=42.91 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=18.6
Q ss_pred hhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 180 NPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 180 ~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
..++..+..|.| |+-||++|+||||..
T Consensus 185 e~l~~~L~~~~~--iil~GppGtGKT~lA 211 (459)
T PRK11331 185 ETILKRLTIKKN--IILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHhcCCC--EEEECCCCCCHHHHH
Confidence 334444445555 445999999999876
No 158
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=58.73 E-value=3.9 Score=40.57 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=15.0
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
.-++-||++|+|||++.
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45788999999999988
No 159
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=58.41 E-value=4.3 Score=31.37 Aligned_cols=15 Identities=40% Similarity=0.707 Sum_probs=12.8
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
.+-.|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999776
No 160
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=58.27 E-value=9 Score=40.42 Aligned_cols=73 Identities=15% Similarity=0.297 Sum_probs=47.3
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhc----CCCeEEEeccCCCCCccccc------ccC-----------CCCCCC
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLK----GKSGMLAALGPSGSGKTHTI------FGC-----------PREPGM 217 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~----G~n~tI~aYGqTgSGKTyTm------~G~-----------~~~~GI 217 (501)
+.||.+.+.-.--..+.+.++..+.++.+. -.---+.-||+.|+|||+.. +|- ....|=
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGE 191 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGE 191 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCc
Confidence 567777665555566677766677777663 22345778999999999873 221 123455
Q ss_pred chhHHHHHHhhccc
Q 046715 218 VPIALKRIFKGTTK 231 (501)
Q Consensus 218 ipr~~~~LF~~~~~ 231 (501)
-.+.++++|....+
T Consensus 192 sEk~IR~~F~~A~~ 205 (413)
T PLN00020 192 PGKLIRQRYREAAD 205 (413)
T ss_pred HHHHHHHHHHHHHH
Confidence 56777777776543
No 161
>PLN03025 replication factor C subunit; Provisional
Probab=57.88 E-value=7.3 Score=39.86 Aligned_cols=42 Identities=21% Similarity=0.442 Sum_probs=26.0
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
.||.|.+ |+++.+. ++.++. .|.-.-++-||+.|+|||++..
T Consensus 11 ~l~~~~g----~~~~~~~-L~~~~~---~~~~~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 11 KLDDIVG----NEDAVSR-LQVIAR---DGNMPNLILSGPPGTGKTTSIL 52 (319)
T ss_pred CHHHhcC----cHHHHHH-HHHHHh---cCCCceEEEECCCCCCHHHHHH
Confidence 4777774 4454443 233322 3333346669999999999984
No 162
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=57.66 E-value=7.3 Score=39.26 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=16.7
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|...-++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 444445788999999999887
No 163
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=57.63 E-value=31 Score=39.34 Aligned_cols=12 Identities=8% Similarity=-0.006 Sum_probs=5.6
Q ss_pred HhhhHHHHHHHh
Q 046715 367 INNTSMVFGLCL 378 (501)
Q Consensus 367 IN~SL~~L~~vi 378 (501)
|.+.+..+.+-|
T Consensus 899 ikK~~~~m~~~i 910 (1102)
T KOG1924|consen 899 IKKNLQQMENQI 910 (1102)
T ss_pred HHHHHHHHHHHH
Confidence 444454444444
No 164
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=57.56 E-value=8.9 Score=40.55 Aligned_cols=118 Identities=20% Similarity=0.270 Sum_probs=58.9
Q ss_pred CCceEEecCCccccccccccceeeecccccCCCCCchhHHHHhhhh-------hHH----HHHhcCCCeEEEeccCCCCC
Q 046715 135 DHNSVTLSPPLALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVN-------PLV----EDFLKGKSGMLAALGPSGSG 203 (501)
Q Consensus 135 ~~~~v~l~~p~~~~~~~~~~~~~~f~FD~Vf~~~~sQ~evf~~~v~-------plv----~~~l~G~n~tI~aYGqTgSG 203 (501)
.+..|++.+..... ++....-..+||..|... .+|.+.+-+ |+- .=+|+|.++.- ..|||+|
T Consensus 197 en~~it~dd~K~ge--krpIPnP~ctFddAFq~~---pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliG--VAQTgtg 269 (629)
T KOG0336|consen 197 ENFNITCDDLKEGE--KRPIPNPVCTFDDAFQCY---PEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIG--VAQTGTG 269 (629)
T ss_pred cCCcEEecccccCC--cccCCCCcCcHHHHHhhh---HHHHHHHHhccCCCCCcchhcccceeecCcceEE--EEecCCC
Confidence 35566666654433 222233346899999643 233333211 111 12679999754 4599999
Q ss_pred ccccc--ccC------------CCCCCCchhHH-HHHHhhcccccCCCccceEE-EEEEEEeeccCCCcceeccC
Q 046715 204 KTHTI--FGC------------PREPGMVPIAL-KRIFKGTTKIRSSESTRSFY-LSIFEIYSERGKGEKLLDLL 262 (501)
Q Consensus 204 KTyTm--~G~------------~~~~GIipr~~-~~LF~~~~~~~~~~~~~~v~-vS~~EIynE~~~~e~i~DLL 262 (501)
||... -|- ...+|++-.+. ++|--+++. ....|+.. +-.+++|.-..+++++-||-
T Consensus 270 KtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~---e~~kysyng~ksvc~ygggnR~eqie~lk 341 (629)
T KOG0336|consen 270 KTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEG---EVKKYSYNGLKSVCVYGGGNRNEQIEDLK 341 (629)
T ss_pred cCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHh---HHhHhhhcCcceEEEecCCCchhHHHHHh
Confidence 99544 331 12344443322 222222221 11112221 22467886656677887775
No 165
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=57.47 E-value=6.8 Score=40.13 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=19.8
Q ss_pred hcCCCeEEEeccCCCCCcccccc
Q 046715 187 LKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 187 l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
-...+..++-||..|||||.+|.
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHHH
Confidence 45677889999999999999993
No 166
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=57.34 E-value=8.8 Score=43.76 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=19.5
Q ss_pred CCCCchhHHHHHHhhcccccCCCcc
Q 046715 214 EPGMVPIALKRIFKGTTKIRSSEST 238 (501)
Q Consensus 214 ~~GIipr~~~~LF~~~~~~~~~~~~ 238 (501)
.-|++-|++.+|+..+....+...+
T Consensus 786 SGGVMDRVVSQLLAELDgls~~~s~ 810 (953)
T KOG0736|consen 786 SGGVMDRVVSQLLAELDGLSDSSSQ 810 (953)
T ss_pred ccccHHHHHHHHHHHhhcccCCCCC
Confidence 4599999999999999886543333
No 167
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=57.10 E-value=8.7 Score=43.75 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=25.5
Q ss_pred HHHHhhhhhHHHHHh-cCCCeEEEeccCCCCCccccc
Q 046715 173 EVYEKMVNPLVEDFL-KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 173 evf~~~v~plv~~~l-~G~n~tI~aYGqTgSGKTyTm 208 (501)
.||.- +......++ .|.|.||+.-|.+|||||.|.
T Consensus 74 Hifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 74 HVFAI-ADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CHHHH-HHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 35544 333333333 689999999999999999887
No 168
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=56.94 E-value=4.8 Score=43.92 Aligned_cols=48 Identities=29% Similarity=0.424 Sum_probs=28.8
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHH--Hhc--C--CCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVED--FLK--G--KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~--~l~--G--~n~tI~aYGqTgSGKTyTm 208 (501)
..||.|.+.+.-.+++.+ ++..+ .+ .+. | ..-.++.||++|+|||+..
T Consensus 52 ~~~~di~g~~~~k~~l~~-~~~~l-~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELME-IVDFL-KNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCHHHhCCHHHHHHHHHH-HHHHH-HCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 578888876554444443 22221 11 111 2 2335888999999999886
No 169
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=56.82 E-value=4.7 Score=41.40 Aligned_cols=18 Identities=39% Similarity=0.636 Sum_probs=14.5
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
-+-|+..|+||||||+.-
T Consensus 97 KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eccEEEECCCCCcHHHHH
Confidence 356889999999999743
No 170
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=56.80 E-value=11 Score=39.53 Aligned_cols=43 Identities=33% Similarity=0.597 Sum_probs=27.4
Q ss_pred cc-ccCCCCCchhHHHHhhhhhHHHHHhcC---CCeEEEeccCCCCCccccc
Q 046715 161 FS-YVFSADSSQGEVYEKMVNPLVEDFLKG---KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 161 FD-~Vf~~~~sQ~evf~~~v~plv~~~l~G---~n~tI~aYGqTgSGKTyTm 208 (501)
|| .||+ +++.-+.++. .+.....| .+-.+.-.|+.|||||...
T Consensus 49 F~~~~~G----~~~~i~~lv~-~l~~~a~g~~~~r~il~L~GPPGsGKStla 95 (361)
T smart00763 49 FDHDFFG----MEEAIERFVN-YFKSAAQGLEERKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred cchhccC----cHHHHHHHHH-HHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 67 7887 4455555443 33333343 4566788899999999654
No 171
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=56.07 E-value=6.6 Score=39.46 Aligned_cols=26 Identities=38% Similarity=0.622 Sum_probs=18.8
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+++..+.. +--++-.|++|+|||-++
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 44444433 556789999999999877
No 172
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=56.00 E-value=9.4 Score=43.74 Aligned_cols=37 Identities=30% Similarity=0.604 Sum_probs=28.4
Q ss_pred HHHHhh-hhhHHHHHhcCCCeEEEeccCCCCCccccccc
Q 046715 173 EVYEKM-VNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 173 evf~~~-v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G 210 (501)
.-|+.. +..+++++-+|.+-.+++. +||+|||||-+-
T Consensus 167 RyyQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAia 204 (875)
T COG4096 167 RYYQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIA 204 (875)
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHHH
Confidence 344433 7778889999999966665 799999999854
No 173
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=55.98 E-value=6.8 Score=40.22 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=26.4
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhc--CCCeEEEeccCCCCCcccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLK--GKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~--G~n~tI~aYGqTgSGKTyTm~ 209 (501)
.|+.+.+ |+++-+. +..++..... +....++-||++|+|||+...
T Consensus 23 ~~~~~vG----~~~~~~~-l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 23 SLDEFIG----QEKVKEN-LKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CHHHhcC----cHHHHHH-HHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 3555443 4444444 3344443322 223357789999999999883
No 174
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=55.90 E-value=6.4 Score=44.40 Aligned_cols=25 Identities=28% Similarity=0.610 Sum_probs=19.6
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+..+++|.+ +++.++||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4455678877 678889999999874
No 175
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.88 E-value=7.4 Score=42.17 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=18.6
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|..+++|.|+ ++..+||||||.+.
T Consensus 19 ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 19 VINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 34557788874 55679999999764
No 176
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=55.61 E-value=4.8 Score=39.20 Aligned_cols=20 Identities=40% Similarity=0.483 Sum_probs=16.9
Q ss_pred CeEEEeccCCCCCccccccc
Q 046715 191 SGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm~G 210 (501)
...++-||..|+|||++.-+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 45699999999999998844
No 177
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=55.41 E-value=8.2 Score=39.41 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=21.6
Q ss_pred hhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+.+++..++.+. ..|+-.|.||||||..|
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 456666666543 46777899999999976
No 178
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=55.26 E-value=4.7 Score=35.60 Aligned_cols=15 Identities=47% Similarity=0.846 Sum_probs=13.2
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
++-+|++|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 467999999999987
No 179
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=55.24 E-value=7 Score=37.69 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=23.6
Q ss_pred hhhHHHHHhcC---CCeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKG---KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G---~n~tI~aYGqTgSGKTyTm 208 (501)
+-+-+|.++.| ....+.-+|++|||||..+
T Consensus 4 G~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 4 GSKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred CchhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 44567888875 4677889999999999876
No 180
>PF13173 AAA_14: AAA domain
Probab=55.15 E-value=5.2 Score=34.96 Aligned_cols=16 Identities=38% Similarity=0.731 Sum_probs=14.5
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.++-+|+.|+|||+.+
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999988
No 181
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=54.86 E-value=4.5 Score=43.62 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=19.7
Q ss_pred HHhcCCCeEEEeccCCCCCcccccccC
Q 046715 185 DFLKGKSGMLAALGPSGSGKTHTIFGC 211 (501)
Q Consensus 185 ~~l~G~n~tI~aYGqTgSGKTyTm~G~ 211 (501)
.+.+|.+ ++|++|||||||+...++
T Consensus 107 ~i~~Grd--l~acAqTGsGKT~aFLiP 131 (482)
T KOG0335|consen 107 IISGGRD--LMACAQTGSGKTAAFLIP 131 (482)
T ss_pred eeecCCc--eEEEccCCCcchHHHHHH
Confidence 3456666 489999999999998764
No 182
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=54.72 E-value=5.8 Score=39.90 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=19.0
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 489999999999999999765
No 183
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=54.59 E-value=6.7 Score=43.74 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=19.7
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|..+++|.| |++.++||||||.+.
T Consensus 39 ~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 3456789998 567889999999764
No 184
>PF05729 NACHT: NACHT domain
Probab=54.55 E-value=5.7 Score=35.38 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=14.3
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.++.+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4678999999999988
No 185
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=54.50 E-value=7.3 Score=39.74 Aligned_cols=72 Identities=19% Similarity=0.324 Sum_probs=52.1
Q ss_pred cccccCCCCCchhHHHHhhhhhH-HHHHhcCCC---eEEEeccCCCCCccccccc-----------CC------CCCCCc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPL-VEDFLKGKS---GMLAALGPSGSGKTHTIFG-----------CP------REPGMV 218 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~pl-v~~~l~G~n---~tI~aYGqTgSGKTyTm~G-----------~~------~~~GIi 218 (501)
.++.|-+-+.--+.+=+.++-|+ ..++|.|.- ..|+.||+.|+||+|.--. -. ..-|=-
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGES 210 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 210 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccH
Confidence 46777777776677777777776 456777764 6799999999999996422 11 123666
Q ss_pred hhHHHHHHhhccc
Q 046715 219 PIALKRIFKGTTK 231 (501)
Q Consensus 219 pr~~~~LF~~~~~ 231 (501)
.+.+..||+...+
T Consensus 211 EkLVknLFemARe 223 (439)
T KOG0739|consen 211 EKLVKNLFEMARE 223 (439)
T ss_pred HHHHHHHHHHHHh
Confidence 7888999987776
No 186
>PRK14974 cell division protein FtsY; Provisional
Probab=54.38 E-value=11 Score=39.05 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=16.0
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...|...|.+|+|||.|+
T Consensus 140 ~~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTI 157 (336)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 467888899999999998
No 187
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=54.26 E-value=3.7 Score=41.48 Aligned_cols=21 Identities=43% Similarity=0.487 Sum_probs=18.4
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
+|++-+|+..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 488899999999999999744
No 188
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=54.23 E-value=5.3 Score=39.91 Aligned_cols=12 Identities=75% Similarity=1.257 Sum_probs=11.3
Q ss_pred ccCCCCCccccc
Q 046715 197 LGPSGSGKTHTI 208 (501)
Q Consensus 197 YGqTgSGKTyTm 208 (501)
.|++|||||+||
T Consensus 33 iGpSGsGKTTtL 44 (309)
T COG1125 33 IGPSGSGKTTTL 44 (309)
T ss_pred ECCCCCcHHHHH
Confidence 499999999999
No 189
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=54.04 E-value=12 Score=42.75 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=26.0
Q ss_pred HHHHhhhhhHHHHHh-cCCCeEEEeccCCCCCccccc
Q 046715 173 EVYEKMVNPLVEDFL-KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 173 evf~~~v~plv~~~l-~G~n~tI~aYGqTgSGKTyTm 208 (501)
.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 Hifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 74 HVYAI-ADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 35544 334444444 689999999999999999886
No 190
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=54.03 E-value=7.9 Score=42.78 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=27.6
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|+.+++++. . +..+...+..+...-|+-||++|+|||+.-
T Consensus 63 ~f~~iiGqs~----~----i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 63 SFDEIIGQEE----G----IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CHHHeeCcHH----H----HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 5888887542 2 233333445566677888999999998655
No 191
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=53.99 E-value=11 Score=42.95 Aligned_cols=21 Identities=48% Similarity=0.651 Sum_probs=19.7
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|.|.||+.-|.+|||||.|.
T Consensus 85 ~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 85 EGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred cCCCceEEEECCCCCCchhHH
Confidence 689999999999999999886
No 192
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=53.85 E-value=10 Score=37.72 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=19.4
Q ss_pred hhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+.++..+..|.+. +-+|++|+|||...
T Consensus 11 ~~~~l~~l~~g~~v--LL~G~~GtGKT~lA 38 (262)
T TIGR02640 11 TSRALRYLKSGYPV--HLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 34445555566554 56899999999876
No 193
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=53.79 E-value=14 Score=39.72 Aligned_cols=18 Identities=39% Similarity=0.529 Sum_probs=16.0
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...|+.+|.+|+|||+|.
T Consensus 95 p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 457888999999999998
No 194
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=53.68 E-value=14 Score=38.39 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=23.6
Q ss_pred hHHHHHhcCCCeEEEeccCCCCCcccccccC
Q 046715 181 PLVEDFLKGKSGMLAALGPSGSGKTHTIFGC 211 (501)
Q Consensus 181 plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~ 211 (501)
.+|..+|+|.+| +....||||||..+-++
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AFaLP 64 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAFALP 64 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhhhHH
Confidence 467778899997 56778999999998764
No 195
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=53.43 E-value=7.4 Score=42.15 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=19.1
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+..+++|.|..+ ..+||||||.+.
T Consensus 117 ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 117 VLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 4566789998654 559999999664
No 196
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.41 E-value=12 Score=44.92 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=13.6
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
+.+.-+|+||||||..|
T Consensus 27 gl~~I~G~nGaGKSTil 43 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLL 43 (1042)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56678899999998544
No 197
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=53.32 E-value=12 Score=36.17 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=22.0
Q ss_pred hHHHHhhhhhHHHHHhc-CCCeEEEeccCCCCCccccc
Q 046715 172 GEVYEKMVNPLVEDFLK-GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 172 ~evf~~~v~plv~~~l~-G~n~tI~aYGqTgSGKTyTm 208 (501)
..+|..++.-+...+-. +..-.|.-.|.+|||||+.+
T Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 13 EAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 34555544443333323 44445556699999999977
No 198
>PRK04328 hypothetical protein; Provisional
Probab=53.01 E-value=9.2 Score=37.76 Aligned_cols=29 Identities=24% Similarity=0.396 Sum_probs=23.0
Q ss_pred hhhHHHHHhcC---CCeEEEeccCCCCCcccc
Q 046715 179 VNPLVEDFLKG---KSGMLAALGPSGSGKTHT 207 (501)
Q Consensus 179 v~plv~~~l~G---~n~tI~aYGqTgSGKTyT 207 (501)
+-+-+|.++.| ....++.+|.+|+|||.-
T Consensus 8 Gi~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 8 GIPGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred CchhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 34567888876 588899999999999853
No 199
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=52.59 E-value=12 Score=42.75 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=25.9
Q ss_pred HHHhhhhhHHHHHh-cCCCeEEEeccCCCCCccccc
Q 046715 174 VYEKMVNPLVEDFL-KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 174 vf~~~v~plv~~~l-~G~n~tI~aYGqTgSGKTyTm 208 (501)
||.- +.....+++ .|.|.||+.-|.+|||||.+.
T Consensus 69 ifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 69 VFAI-ADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred HHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 5543 444445554 589999999999999999886
No 200
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=52.39 E-value=8 Score=40.19 Aligned_cols=42 Identities=24% Similarity=0.424 Sum_probs=30.1
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
|.|..|.+ |+++ ..-++-.+++..-+-++-.|.+|+|||..+
T Consensus 1 ~pf~~ivg----q~~~----~~al~~~~~~~~~g~vli~G~~G~gKttl~ 42 (337)
T TIGR02030 1 FPFTAIVG----QDEM----KLALLLNVIDPKIGGVMVMGDRGTGKSTAV 42 (337)
T ss_pred CCcccccc----HHHH----HHHHHHHhcCCCCCeEEEEcCCCCCHHHHH
Confidence 45677665 4444 444566666766667889999999999988
No 201
>PHA02244 ATPase-like protein
Probab=52.35 E-value=14 Score=38.97 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=17.8
Q ss_pred hHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 181 PLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 181 plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+..-+-.|.+. +-+|++|+|||+..
T Consensus 111 ri~r~l~~~~PV--LL~GppGtGKTtLA 136 (383)
T PHA02244 111 DIAKIVNANIPV--FLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHhcCCCE--EEECCCCCCHHHHH
Confidence 333333356654 55899999999877
No 202
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=52.19 E-value=11 Score=43.16 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=25.1
Q ss_pred HHHhhhhhHHHHHh-cCCCeEEEeccCCCCCccccc
Q 046715 174 VYEKMVNPLVEDFL-KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 174 vf~~~v~plv~~~l-~G~n~tI~aYGqTgSGKTyTm 208 (501)
||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 ifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 74 VFAI-ADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred HHHH-HHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 5543 333334433 689999999999999999887
No 203
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=52.16 E-value=13 Score=42.44 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=25.0
Q ss_pred HHHhhhhhHHHHHh-cCCCeEEEeccCCCCCccccc
Q 046715 174 VYEKMVNPLVEDFL-KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 174 vf~~~v~plv~~~l-~G~n~tI~aYGqTgSGKTyTm 208 (501)
||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 69 ifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 69 IFAI-SDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred HHHH-HHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 5543 333334433 689999999999999999886
No 204
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=52.00 E-value=8.8 Score=39.89 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=22.7
Q ss_pred hhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..++..++.+. +.|+..|.||||||.+|
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 456666677653 68899999999999877
No 205
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=51.80 E-value=12 Score=42.76 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=25.6
Q ss_pred HHHHhhhhhHHHHHh-cCCCeEEEeccCCCCCccccc
Q 046715 173 EVYEKMVNPLVEDFL-KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 173 evf~~~v~plv~~~l-~G~n~tI~aYGqTgSGKTyTm 208 (501)
.||.- +......++ .|.|-||+.-|.+|||||.+.
T Consensus 73 Hiyai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 73 HIFAI-ADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 35543 333334443 699999999999999999876
No 206
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=51.62 E-value=12 Score=42.65 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=24.8
Q ss_pred HHHhhhhhHHHHHh-cCCCeEEEeccCCCCCccccc
Q 046715 174 VYEKMVNPLVEDFL-KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 174 vf~~~v~plv~~~l-~G~n~tI~aYGqTgSGKTyTm 208 (501)
||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 77 iy~i-A~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 77 IFAI-ADVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred HHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 5543 333333333 689999999999999999886
No 207
>PRK05580 primosome assembly protein PriA; Validated
Probab=51.39 E-value=7.3 Score=44.39 Aligned_cols=40 Identities=23% Similarity=0.205 Sum_probs=25.1
Q ss_pred ccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 163 YVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 163 ~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
.-+.....|+++++.+... . ++ ..++.+|+||||||...+
T Consensus 141 ~~~~Lt~~Q~~ai~~i~~~----~--~~-~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 141 EPPTLNPEQAAAVEAIRAA----A--GF-SPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CCCCCCHHHHHHHHHHHhc----c--CC-CcEEEECCCCChHHHHHH
Confidence 3344455677666553322 1 23 348899999999997663
No 208
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=51.37 E-value=6.4 Score=42.41 Aligned_cols=49 Identities=22% Similarity=0.305 Sum_probs=29.3
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHH-hc--CC--CeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDF-LK--GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~-l~--G~--n~tI~aYGqTgSGKTyTm 208 (501)
+|+.|.+-+..-+++.+.+..|+...- +. |. ...++-||++|+|||++.
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 567776555444555555444444321 11 21 234778999999999887
No 209
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=51.34 E-value=6.1 Score=35.25 Aligned_cols=15 Identities=40% Similarity=0.625 Sum_probs=13.0
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+..|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999875
No 210
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=51.07 E-value=6.6 Score=38.26 Aligned_cols=23 Identities=48% Similarity=0.722 Sum_probs=16.4
Q ss_pred HhcCCCeE------EEeccCCCCCccccc
Q 046715 186 FLKGKSGM------LAALGPSGSGKTHTI 208 (501)
Q Consensus 186 ~l~G~n~t------I~aYGqTgSGKTyTm 208 (501)
+|+|.|.. +.-.|++|||||+.+
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHH
Confidence 45555544 355799999999877
No 211
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=51.00 E-value=8.4 Score=40.73 Aligned_cols=43 Identities=26% Similarity=0.377 Sum_probs=31.4
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHT 207 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyT 207 (501)
+||.|++ |+.+... ..++-.-+-.|.-...+-||+.|+|||..
T Consensus 22 ~lde~vG----Q~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 22 SLDEVVG----QEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred CHHHhcC----hHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 4777775 6666655 55555445567777888999999999964
No 212
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=50.80 E-value=6.6 Score=42.13 Aligned_cols=18 Identities=50% Similarity=0.912 Sum_probs=14.9
Q ss_pred eEEEeccCCCCCcccccc
Q 046715 192 GMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm~ 209 (501)
..|+..|++|+|||+|+.
T Consensus 222 ~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLA 239 (424)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 366677999999999983
No 213
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=50.75 E-value=13 Score=42.29 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=25.5
Q ss_pred HHHhhhhhHHHHHh-cCCCeEEEeccCCCCCccccc
Q 046715 174 VYEKMVNPLVEDFL-KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 174 vf~~~v~plv~~~l-~G~n~tI~aYGqTgSGKTyTm 208 (501)
||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 70 ifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 70 LFAI-ANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred HHHH-HHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 5544 333344443 699999999999999999886
No 214
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=50.67 E-value=14 Score=42.16 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=25.1
Q ss_pred HHHhhhhhHHHHHh-cCCCeEEEeccCCCCCccccc
Q 046715 174 VYEKMVNPLVEDFL-KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 174 vf~~~v~plv~~~l-~G~n~tI~aYGqTgSGKTyTm 208 (501)
||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 69 ifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 69 IYAL-ADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred HHHH-HHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 5543 333333433 689999999999999999886
No 215
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=50.60 E-value=9.7 Score=43.68 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=26.9
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
+||.+++ |+.+-.. ...+...+-.|.-..++-||++|+|||++..
T Consensus 26 tldd~vG----Qe~ii~~-~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 26 TLEEFVG----QDHILGE-GRLLRRAIKADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cHHHhcC----cHHHhhh-hHHHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 4777665 4444322 1222222224555577889999999998873
No 216
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=50.55 E-value=9.3 Score=43.19 Aligned_cols=18 Identities=39% Similarity=0.761 Sum_probs=15.3
Q ss_pred EEEeccCCCCCccccccc
Q 046715 193 MLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm~G 210 (501)
.++..|+.|+|||||+..
T Consensus 175 ~~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVE 192 (637)
T ss_pred eEEEEcCCCCCHHHHHHH
Confidence 456899999999999954
No 217
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=50.50 E-value=7 Score=36.07 Aligned_cols=18 Identities=39% Similarity=0.800 Sum_probs=15.3
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
++..+-||.+|+|||..|
T Consensus 19 ~g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp SEEEEEEESTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356678999999999888
No 218
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=50.35 E-value=13 Score=39.60 Aligned_cols=17 Identities=47% Similarity=0.858 Sum_probs=15.4
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+..|++|+|||+|+
T Consensus 242 ~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 242 QTIALIGPTGVGKTTTL 258 (436)
T ss_pred cEEEEECCCCCcHHHHH
Confidence 56788899999999999
No 219
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=50.30 E-value=17 Score=42.90 Aligned_cols=35 Identities=29% Similarity=0.728 Sum_probs=22.6
Q ss_pred CeEEEeccCCCCCcc-------cccccCCCCCCCchhHHHHHHh
Q 046715 191 SGMLAALGPSGSGKT-------HTIFGCPREPGMVPIALKRIFK 227 (501)
Q Consensus 191 n~tI~aYGqTgSGKT-------yTm~G~~~~~GIipr~~~~LF~ 227 (501)
++..+-+|+|||||| |.+||...-.| .....++..
T Consensus 25 ~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~--~~~~~~~i~ 66 (908)
T COG0419 25 SGIFLIVGPNGAGKSSILDAITFALYGKTPRLG--AFSLDDLIR 66 (908)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc--chhhhHHHh
Confidence 345567899999998 56688765444 344444443
No 220
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=50.17 E-value=6.3 Score=37.94 Aligned_cols=16 Identities=50% Similarity=0.902 Sum_probs=13.2
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|+.|||||.+|
T Consensus 27 i~~ivGpNGaGKSTll 42 (212)
T cd03274 27 FSAIVGPNGSGKSNVI 42 (212)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3446699999999998
No 221
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=50.16 E-value=8.7 Score=36.35 Aligned_cols=25 Identities=36% Similarity=0.674 Sum_probs=18.8
Q ss_pred HHHhcCC---CeEEEeccCCCCCccccc
Q 046715 184 EDFLKGK---SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 184 ~~~l~G~---n~tI~aYGqTgSGKTyTm 208 (501)
|.++.|- ...+.-||.+|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4455443 677889999999999765
No 222
>PRK00131 aroK shikimate kinase; Reviewed
Probab=49.96 E-value=7.4 Score=35.24 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.9
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
-.|+.+|..|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 47899999999999875
No 223
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=49.54 E-value=14 Score=42.23 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=24.7
Q ss_pred HHHhhhhhHHHHHh-cCCCeEEEeccCCCCCccccc
Q 046715 174 VYEKMVNPLVEDFL-KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 174 vf~~~v~plv~~~l-~G~n~tI~aYGqTgSGKTyTm 208 (501)
||.- +......++ .|.|-||+.-|.+|||||.+.
T Consensus 69 ifai-A~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 69 IFAI-AEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred HHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 4533 333333333 799999999999999999876
No 224
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=49.50 E-value=8.6 Score=44.17 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=28.4
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHH-HHhc--C--CCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVE-DFLK--G--KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~-~~l~--G--~n~tI~aYGqTgSGKTyTm 208 (501)
++||.|-+.+..-+.+.+.+..|+-. .+++ | ..-.|+-||++|+|||+.+
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 57888775444334443333222211 1222 2 1246889999999999875
No 225
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=49.39 E-value=7.1 Score=36.02 Aligned_cols=15 Identities=40% Similarity=0.558 Sum_probs=13.2
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+.+|..|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999864
No 226
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=49.32 E-value=7.7 Score=33.40 Aligned_cols=17 Identities=35% Similarity=0.300 Sum_probs=14.1
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..+.-.|++|||||.++
T Consensus 16 e~v~I~GpSGsGKSTLl 32 (107)
T cd00820 16 VGVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 34667799999999987
No 227
>PRK07261 topology modulation protein; Provisional
Probab=49.17 E-value=7.2 Score=36.12 Aligned_cols=15 Identities=47% Similarity=0.680 Sum_probs=13.2
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+..|.+|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678899999999866
No 228
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=49.15 E-value=11 Score=42.84 Aligned_cols=22 Identities=32% Similarity=0.170 Sum_probs=16.9
Q ss_pred cCCCeEEEeccCCCCCcccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
.+...-++..|+||||||....
T Consensus 279 ~~~~~~~Ll~~~TGSGKT~va~ 300 (681)
T PRK10917 279 SPKPMNRLLQGDVGSGKTVVAA 300 (681)
T ss_pred ccCCceEEEECCCCCcHHHHHH
Confidence 3444568999999999997653
No 229
>PHA02624 large T antigen; Provisional
Probab=48.87 E-value=13 Score=41.68 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=22.2
Q ss_pred HHHHHhcCCCe--EEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSG--MLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~--tI~aYGqTgSGKTyTm 208 (501)
+++.++.|... ||+-||+.|||||+-.
T Consensus 420 ~lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 420 ILKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 46677788766 9999999999999755
No 230
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=48.74 E-value=10 Score=39.53 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=20.9
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
++.+.+|-+..++..++||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 34567787778888999999999874
No 231
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=48.63 E-value=12 Score=41.27 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=19.3
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+..+++|.| +++..+||||||.+.
T Consensus 151 aip~il~g~d--viv~ApTGSGKTlay 175 (518)
T PLN00206 151 AIPAALSGRS--LLVSADTGSGKTASF 175 (518)
T ss_pred HHHHHhcCCC--EEEEecCCCCccHHH
Confidence 4566778887 577889999999653
No 232
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=48.44 E-value=27 Score=36.53 Aligned_cols=60 Identities=37% Similarity=0.693 Sum_probs=41.1
Q ss_pred ccCCCCCchhHHHHhhhhhHHHHHhcCCC---eEEEeccCCCCCcc---------------cccccCC--CCC-CCchhH
Q 046715 163 YVFSADSSQGEVYEKMVNPLVEDFLKGKS---GMLAALGPSGSGKT---------------HTIFGCP--REP-GMVPIA 221 (501)
Q Consensus 163 ~Vf~~~~sQ~evf~~~v~plv~~~l~G~n---~tI~aYGqTgSGKT---------------yTm~G~~--~~~-GIipr~ 221 (501)
.+|+- ++.-+..|. .+.++-+|.. -.+.-.|+.|+||| ||+.|++ ++| +|+|.-
T Consensus 62 ~~~G~----~~~i~~lV~-~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L~P~~ 136 (358)
T PF08298_consen 62 EFYGM----EETIERLVN-YFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHLFPKE 136 (358)
T ss_pred cccCc----HHHHHHHHH-HHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhhCCHh
Confidence 67763 333444344 4556666654 45788899999998 7788875 333 999998
Q ss_pred HHHHHh
Q 046715 222 LKRIFK 227 (501)
Q Consensus 222 ~~~LF~ 227 (501)
+...|.
T Consensus 137 ~r~~~~ 142 (358)
T PF08298_consen 137 LRREFE 142 (358)
T ss_pred HHHHHH
Confidence 888775
No 233
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=48.34 E-value=7.4 Score=42.40 Aligned_cols=17 Identities=53% Similarity=0.968 Sum_probs=14.9
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|.-.|++|+|||.|+
T Consensus 257 ~Vi~LvGpnGvGKTTTi 273 (484)
T PRK06995 257 GVFALMGPTGVGKTTTT 273 (484)
T ss_pred cEEEEECCCCccHHHHH
Confidence 46777799999999999
No 234
>CHL00176 ftsH cell division protein; Validated
Probab=47.87 E-value=9.3 Score=43.20 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=14.9
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+-||++|+|||+..
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999876
No 235
>PRK10865 protein disaggregation chaperone; Provisional
Probab=47.85 E-value=14 Score=43.39 Aligned_cols=17 Identities=47% Similarity=0.771 Sum_probs=15.1
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
+.++-+|++|+|||++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 599 GSFLFLGPTGVGKTELC 615 (857)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57888899999999977
No 236
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=47.71 E-value=7.3 Score=41.48 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=15.0
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
+--++.+|.||||||..|
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 345788999999999876
No 237
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.68 E-value=14 Score=42.62 Aligned_cols=17 Identities=59% Similarity=0.987 Sum_probs=15.1
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
.+|.-.|++|+|||+|+
T Consensus 186 ~Vi~lVGpnGvGKTTTi 202 (767)
T PRK14723 186 GVLALVGPTGVGKTTTT 202 (767)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46777899999999999
No 238
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=47.66 E-value=12 Score=42.13 Aligned_cols=24 Identities=25% Similarity=0.621 Sum_probs=17.5
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|.|+.+ .++||||||.+.
T Consensus 34 i~~il~g~dvlv--~apTGsGKTl~y 57 (607)
T PRK11057 34 IDAVLSGRDCLV--VMPTGGGKSLCY 57 (607)
T ss_pred HHHHHcCCCEEE--EcCCCchHHHHH
Confidence 345668888654 579999999753
No 239
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=47.63 E-value=10 Score=39.60 Aligned_cols=24 Identities=46% Similarity=0.689 Sum_probs=20.6
Q ss_pred cCCCeEEEeccCCCCCccc---ccccC
Q 046715 188 KGKSGMLAALGPSGSGKTH---TIFGC 211 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTy---Tm~G~ 211 (501)
.|+.-+|++.|++|+|||. ||+|.
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~ 46 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGT 46 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHh
Confidence 6999999999999999996 44554
No 240
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=47.60 E-value=13 Score=37.55 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=23.6
Q ss_pred HHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 175 YEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 175 f~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
|...+..+|.+.=..-+.+|.-+|+=|||||+-|
T Consensus 4 ~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 4 YAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred HHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHH
Confidence 3344444444432356788999999999999977
No 241
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=47.57 E-value=13 Score=40.78 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=29.6
Q ss_pred eeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcc
Q 046715 157 VYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKT 205 (501)
Q Consensus 157 ~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKT 205 (501)
..|+||.+.+.+..=.++- .++ .-..+.+++|+-+|.||+||-
T Consensus 240 a~y~f~~Iig~S~~m~~~~-----~~a-kr~A~tdstVLi~GESGTGKE 282 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVL-----ELA-KRIAKTDSTVLILGESGTGKE 282 (560)
T ss_pred cccchhhhccCCHHHHHHH-----HHH-HhhcCCCCcEEEecCCCccHH
Confidence 4578999987653322111 111 335789999999999999996
No 242
>PRK06696 uridine kinase; Validated
Probab=47.57 E-value=15 Score=35.34 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=19.8
Q ss_pred hhhHHHHHh---cCCCeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFL---KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l---~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+.+.++ .+....|..-|.+|||||+..
T Consensus 7 ~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 7 IKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 333444443 344556667799999999866
No 243
>PHA02653 RNA helicase NPH-II; Provisional
Probab=47.40 E-value=13 Score=42.32 Aligned_cols=33 Identities=33% Similarity=0.455 Sum_probs=22.9
Q ss_pred CchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccc
Q 046715 169 SSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHT 207 (501)
Q Consensus 169 ~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyT 207 (501)
+-|.++=+. ++..+++|.+ ++..|+||||||..
T Consensus 163 ~~~~~iQ~q----il~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 163 SLQPDVQLK----IFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred chhHHHHHH----HHHHHHhCCC--EEEECCCCCCchhH
Confidence 445555544 4445566765 58899999999976
No 244
>PRK08118 topology modulation protein; Reviewed
Probab=47.29 E-value=8.1 Score=35.70 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=12.6
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+..|+.|||||+..
T Consensus 4 I~I~G~~GsGKSTla 18 (167)
T PRK08118 4 IILIGSGGSGKSTLA 18 (167)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999643
No 245
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=47.28 E-value=9.2 Score=40.15 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=13.9
Q ss_pred EEeccCCCCCcccccc
Q 046715 194 LAALGPSGSGKTHTIF 209 (501)
Q Consensus 194 I~aYGqTgSGKTyTm~ 209 (501)
++.+|+||||||+++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5788999999999873
No 246
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=47.01 E-value=8.2 Score=35.57 Aligned_cols=16 Identities=38% Similarity=0.841 Sum_probs=14.3
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|++|||||..+
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999988
No 247
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=46.77 E-value=16 Score=42.27 Aligned_cols=18 Identities=39% Similarity=0.647 Sum_probs=16.0
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
.+.++-+|++|+|||++.
T Consensus 488 ~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 367899999999999987
No 248
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.47 E-value=11 Score=42.52 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=24.3
Q ss_pred chhHHHHhhhhhHHHHHhcCC--CeEEEeccCCCCCcccccc
Q 046715 170 SQGEVYEKMVNPLVEDFLKGK--SGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 170 sQ~evf~~~v~plv~~~l~G~--n~tI~aYGqTgSGKTyTm~ 209 (501)
-|++.... +..++..+.-+. .-.++.||++|+|||.++.
T Consensus 88 ~~~~ki~~-l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 88 VHKKKIEE-VETWLKAQVLENAPKRILLITGPSGCGKSTTIK 128 (637)
T ss_pred CcHHHHHH-HHHHHHhcccccCCCcEEEEECCCCCCHHHHHH
Confidence 34544444 444455444332 2247889999999999883
No 249
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=46.40 E-value=14 Score=38.30 Aligned_cols=40 Identities=38% Similarity=0.581 Sum_probs=30.4
Q ss_pred CCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 165 FSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 165 f~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
|+-...|.++++- +-+.++.|-.-.++-.|+.|||||+.+
T Consensus 27 ~g~~~~~~~l~~~----lkqt~~~gEsnsviiigprgsgkT~li 66 (408)
T KOG2228|consen 27 FGVQDEQKHLSEL----LKQTILHGESNSVIIIGPRGSGKTILI 66 (408)
T ss_pred eehHHHHHHHHHH----HHHHHHhcCCCceEEEccCCCCceEee
Confidence 4445567777655 334567898888999999999999987
No 250
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=46.16 E-value=9.1 Score=39.43 Aligned_cols=62 Identities=26% Similarity=0.287 Sum_probs=39.6
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHh-cCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHh
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFL-KGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFK 227 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l-~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~ 227 (501)
.|-.|=+.+.++.+-=.+....+|+.++ +|+. .|.||..|.|||+.+. ..+|.--+-.++|-
T Consensus 59 ~f~~v~a~~~~~~eWdrs~~P~lId~~fr~g~~--~~~~gdsg~GKttllL----~l~IalaaG~~lfG 121 (402)
T COG3598 59 SFIQVQAEAMRLSEWDRSNSPQLIDEFFRKGYV--SILYGDSGVGKTTLLL----YLCIALAAGKNLFG 121 (402)
T ss_pred heeEehhhhcChhhcCcccChhhhhHHhhcCee--EEEecCCcccHhHHHH----HHHHHHHhhHHHhc
Confidence 3455555555555544555667777776 6665 5789999999999873 23444444455665
No 251
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=46.14 E-value=9.1 Score=38.90 Aligned_cols=44 Identities=20% Similarity=0.300 Sum_probs=28.6
Q ss_pred ccccCCCCCchhHHHHhhhhhHHHHHhcC---CCeEEEeccCCCCCccccc
Q 046715 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKG---KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 161 FD~Vf~~~~sQ~evf~~~v~plv~~~l~G---~n~tI~aYGqTgSGKTyTm 208 (501)
.+.+|+.+....+.+. .++-.+|.| .-..+|.||..|+|||..+
T Consensus 47 L~~~~~~d~~~~~~l~----~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~ 93 (304)
T TIGR01613 47 LLETFGGDNELIEYLQ----RVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQ 93 (304)
T ss_pred HHHHhCCCHHHHHHHH----HHHhHHhcCCCCceEEEEEECCCCCcHHHHH
Confidence 4667765544433333 344444544 4567999999999999877
No 252
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=45.91 E-value=8 Score=37.83 Aligned_cols=15 Identities=53% Similarity=0.953 Sum_probs=12.8
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
+.-.|++|||||+.|
T Consensus 34 vaI~GpSGSGKSTLL 48 (226)
T COG1136 34 VAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEECCCCCCHHHHH
Confidence 466799999999876
No 253
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=45.63 E-value=14 Score=35.81 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=22.9
Q ss_pred hhhHHHHHhc-CC--CeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLK-GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~-G~--n~tI~aYGqTgSGKTyTm 208 (501)
+-+-+|.++. |+ ..+++.+|.+|||||+-.
T Consensus 10 Gi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 10 GNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 4456677775 43 677888899999999765
No 254
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=45.53 E-value=7.3 Score=35.31 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=11.6
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+..|++|||||+..
T Consensus 1 i~l~G~~GsGKSTla 15 (163)
T TIGR01313 1 FVLMGVAGSGKSTIA 15 (163)
T ss_pred CEEECCCCCCHHHHH
Confidence 356799999998654
No 255
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=45.18 E-value=9.7 Score=41.78 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=29.4
Q ss_pred EEEeccCCCCCcccccccC---C---CCCCCchhHHHHHHhhccc
Q 046715 193 MLAALGPSGSGKTHTIFGC---P---REPGMVPIALKRIFKGTTK 231 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm~G~---~---~~~GIipr~~~~LF~~~~~ 231 (501)
-||..|+|+|||||--.-- . --.|=+-....++|++...
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na 237 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNA 237 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhh
Confidence 4899999999999987432 1 1236677788899998776
No 256
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=45.03 E-value=15 Score=37.10 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=24.3
Q ss_pred CCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 168 DSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 168 ~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
-..|.++-+. +.+.+-+|.+ ++.=.+||+|||.+.+
T Consensus 10 r~~Q~~~m~~----v~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00489 10 YPIQYEFMEE----LKRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred CHHHHHHHHH----HHHHHHcCCc--EEEECCCCcchhHHHH
Confidence 4567665555 4444556754 4667799999998874
No 257
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=45.03 E-value=15 Score=37.10 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=24.3
Q ss_pred CCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 168 DSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 168 ~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
-..|.++-+. +.+.+-+|.+ ++.=.+||+|||.+.+
T Consensus 10 r~~Q~~~m~~----v~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00488 10 YPIQYEFMEE----LKRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred CHHHHHHHHH----HHHHHHcCCc--EEEECCCCcchhHHHH
Confidence 4567665555 4444556754 4667799999998874
No 258
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=44.87 E-value=14 Score=41.70 Aligned_cols=18 Identities=33% Similarity=0.220 Sum_probs=14.8
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
..-++..|+||||||...
T Consensus 256 ~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 256 PMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CccEEEECCCCCcHHHHH
Confidence 345789999999999865
No 259
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=44.65 E-value=8.5 Score=42.27 Aligned_cols=16 Identities=38% Similarity=0.546 Sum_probs=14.0
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+-||++|+|||+..
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999999865
No 260
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=44.65 E-value=14 Score=35.51 Aligned_cols=28 Identities=39% Similarity=0.697 Sum_probs=21.3
Q ss_pred hHHHHHhc-C--CCeEEEeccCCCCCccccc
Q 046715 181 PLVEDFLK-G--KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 181 plv~~~l~-G--~n~tI~aYGqTgSGKTyTm 208 (501)
+-+|.++. | .++.++.+|++|||||.-.
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~l~ 36 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTTLA 36 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHHHH
Confidence 45677774 4 3788999999999998543
No 261
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=44.56 E-value=15 Score=42.82 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=20.6
Q ss_pred hhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
...+++.+-++. .|+..|+||||||..+
T Consensus 10 ~~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 10 LPELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 555666665554 4678999999999876
No 262
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=44.53 E-value=9.4 Score=35.42 Aligned_cols=15 Identities=47% Similarity=0.787 Sum_probs=13.1
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+.+|..|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999655
No 263
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=44.52 E-value=18 Score=38.76 Aligned_cols=17 Identities=47% Similarity=0.813 Sum_probs=14.8
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+..|++|+|||+|+
T Consensus 224 ~vi~lvGptGvGKTTta 240 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSI 240 (432)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45777899999999998
No 264
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=44.42 E-value=8.9 Score=32.34 Aligned_cols=15 Identities=53% Similarity=0.789 Sum_probs=13.2
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+..|..|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678899999999876
No 265
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=44.35 E-value=8.9 Score=34.06 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=13.8
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
+|+.+|..|||||+..
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999999865
No 266
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=44.30 E-value=13 Score=40.52 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=20.0
Q ss_pred HHHHhcCCC------eEEEeccCCCCCcccccc
Q 046715 183 VEDFLKGKS------GMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 183 v~~~l~G~n------~tI~aYGqTgSGKTyTm~ 209 (501)
+..+++|.+ -.|+-.|++|||||+.|-
T Consensus 18 l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 18 LERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 445566643 346788999999999985
No 267
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=44.28 E-value=14 Score=35.44 Aligned_cols=30 Identities=30% Similarity=0.525 Sum_probs=22.9
Q ss_pred hhhHHHHHhc-CC--CeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLK-GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~-G~--n~tI~aYGqTgSGKTyTm 208 (501)
+-+-+|.++. |+ ...+..+|.+|||||...
T Consensus 8 Gi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 8 GCKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred CcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4455788885 43 457789999999999876
No 268
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=43.96 E-value=18 Score=41.83 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=24.7
Q ss_pred HHHhhhhhHHHHHh-cCCCeEEEeccCCCCCccccc
Q 046715 174 VYEKMVNPLVEDFL-KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 174 vf~~~v~plv~~~l-~G~n~tI~aYGqTgSGKTyTm 208 (501)
||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 69 ifai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 69 IYSL-AQTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred HHHH-HHHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 5543 333333333 699999999999999999876
No 269
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=43.92 E-value=14 Score=41.19 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=18.5
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+|..+++|.|+ ++..+||+|||.+.
T Consensus 21 ~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 21 IISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 34456789885 55569999999874
No 270
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=43.61 E-value=21 Score=36.11 Aligned_cols=39 Identities=28% Similarity=0.506 Sum_probs=25.3
Q ss_pred hhhHHHHHhc-CCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHh
Q 046715 179 VNPLVEDFLK-GKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFK 227 (501)
Q Consensus 179 v~plv~~~l~-G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~ 227 (501)
.++.+.++.. |-=--++.||++|+||-..+ -..+++||-
T Consensus 21 ~~~~Lksl~~~~d~PHll~yGPSGaGKKTri----------mclL~elYG 60 (351)
T KOG2035|consen 21 LANLLKSLSSTGDFPHLLVYGPSGAGKKTRI----------MCLLRELYG 60 (351)
T ss_pred HHHHHHHhcccCCCCeEEEECCCCCCchhhH----------HHHHHHHhC
Confidence 4444455443 42234788999999997665 356777775
No 271
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=43.57 E-value=10 Score=40.93 Aligned_cols=30 Identities=40% Similarity=0.718 Sum_probs=21.7
Q ss_pred HhcCCCeEEEeccCCCCCcccccccCCCCCCCchh
Q 046715 186 FLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPI 220 (501)
Q Consensus 186 ~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr 220 (501)
+..|.| ++.||+.|||||... ..-+||+|-
T Consensus 195 AAGgHn--Ll~~GpPGtGKTmla---~Rl~~lLPp 224 (490)
T COG0606 195 AAGGHN--LLLVGPPGTGKTMLA---SRLPGLLPP 224 (490)
T ss_pred HhcCCc--EEEecCCCCchHHhh---hhhcccCCC
Confidence 334555 688999999999887 234677765
No 272
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=43.27 E-value=26 Score=42.04 Aligned_cols=18 Identities=44% Similarity=0.916 Sum_probs=13.8
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
.+.+.-+|+||||||..+
T Consensus 30 ~~l~~I~G~tGaGKStil 47 (1047)
T PRK10246 30 NGLFAITGPTGAGKTTLL 47 (1047)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 356677899999998643
No 273
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=43.25 E-value=9.3 Score=44.22 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.8
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
|.-++..|.||||||++|
T Consensus 430 n~n~~I~G~tGsGKS~~~ 447 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFM 447 (797)
T ss_pred ccceEEEcCCCCCHHHHH
Confidence 456788999999999999
No 274
>PRK06217 hypothetical protein; Validated
Probab=43.16 E-value=9.9 Score=35.39 Aligned_cols=15 Identities=40% Similarity=0.465 Sum_probs=13.2
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+..|.+|||||+.-
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788899999999765
No 275
>CHL00181 cbbX CbbX; Provisional
Probab=42.96 E-value=9.9 Score=38.49 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=13.6
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 677999999999987
No 276
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=42.77 E-value=16 Score=39.57 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=27.1
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCC-CeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGK-SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~-n~tI~aYGqTgSGKTyTm 208 (501)
.||.|+++ +.+ +..+...+-.|. ...++-||+.|+|||.+.
T Consensus 15 ~~~diiGq----~~~----v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 15 TFSEILGQ----DAV----VAVLKNALRFNRAAHAYLFSGIRGTGKTTLA 56 (451)
T ss_pred CHHHhcCc----HHH----HHHHHHHHHcCCCceEEEEEcCCCCCHHHHH
Confidence 58888864 333 333433444554 355777999999999877
No 277
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=42.72 E-value=17 Score=34.70 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=23.0
Q ss_pred hhhHHHHHhc-CC--CeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLK-GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~-G~--n~tI~aYGqTgSGKTyTm 208 (501)
+-+-+|.++. |+ ...+.-+|++|+|||..+
T Consensus 4 G~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~ 36 (226)
T cd01393 4 GSKALDELLGGGIPTGRITEIFGEFGSGKTQLC 36 (226)
T ss_pred CcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHH
Confidence 4466788885 43 456788999999999877
No 278
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.69 E-value=15 Score=40.26 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=26.7
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCC-CeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGK-SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~-n~tI~aYGqTgSGKTyTm 208 (501)
+||.|.+ |+.+-+ .+-..+-.|. .-.++-||+.|+|||.+.
T Consensus 11 ~f~dliG----Qe~vv~----~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 11 SFKDLVG----QDVLVR----ILRNAFTLNKIPQSILLVGASGVGKTTCA 52 (491)
T ss_pred CHHHhcC----cHHHHH----HHHHHHHcCCCCceEEEECCCCccHHHHH
Confidence 5888876 443333 2323333454 347999999999999865
No 279
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=42.64 E-value=9.8 Score=38.42 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=14.2
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
-++-+|++|+|||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4788999999999876
No 280
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=42.63 E-value=19 Score=41.43 Aligned_cols=17 Identities=41% Similarity=0.673 Sum_probs=15.0
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
+.++-+|+||+|||++.
T Consensus 485 ~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELA 501 (731)
T ss_pred eeEEEECCCCccHHHHH
Confidence 46888999999999887
No 281
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=42.59 E-value=11 Score=36.13 Aligned_cols=16 Identities=38% Similarity=0.507 Sum_probs=14.0
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999765
No 282
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=42.51 E-value=9.7 Score=35.83 Aligned_cols=15 Identities=53% Similarity=0.809 Sum_probs=12.8
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|.-.|++|||||+.-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999876
No 283
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=42.42 E-value=12 Score=37.51 Aligned_cols=18 Identities=39% Similarity=0.617 Sum_probs=14.6
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
..+|...|++|+|||.|.
T Consensus 72 ~~vi~l~G~~G~GKTTt~ 89 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTI 89 (272)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 345666699999999998
No 284
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=42.29 E-value=20 Score=40.61 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=24.6
Q ss_pred HHHhhhhhHHHHHh-cCCCeEEEeccCCCCCccccc
Q 046715 174 VYEKMVNPLVEDFL-KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 174 vf~~~v~plv~~~l-~G~n~tI~aYGqTgSGKTyTm 208 (501)
+|.- +......++ .+.|-||+.-|.+|||||.|.
T Consensus 69 ifav-A~~Ay~~m~~~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 69 IFAI-ADAAYQSLVTYNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred HHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 5543 333333333 589999999999999999887
No 285
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=42.23 E-value=11 Score=39.97 Aligned_cols=18 Identities=33% Similarity=0.702 Sum_probs=15.2
Q ss_pred eEEEeccCCCCCcccccc
Q 046715 192 GMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm~ 209 (501)
-.|+..|++|+|||+|+.
T Consensus 207 ~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLV 224 (407)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 356778999999999994
No 286
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=42.17 E-value=20 Score=35.40 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=23.3
Q ss_pred hhhHHHHHhc--CCCeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLK--GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~--G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+.+.+.+ .-...|.-+|..|.|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 4556666665 66778999999999999866
No 287
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=41.89 E-value=11 Score=39.36 Aligned_cols=49 Identities=24% Similarity=0.321 Sum_probs=33.4
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHH-Hh--cCCC--eEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVED-FL--KGKS--GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~-~l--~G~n--~tI~aYGqTgSGKTyTm 208 (501)
+|+.|=+-+..-++|.+.+--||.+- .| =|.. --|+.||+.|+|||-.-
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHH
Confidence 56677666666677777776676553 22 2443 35899999999998543
No 288
>PRK08233 hypothetical protein; Provisional
Probab=41.88 E-value=11 Score=34.57 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=12.7
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+.-|.+|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455699999999876
No 289
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=41.82 E-value=9.8 Score=39.04 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.4
Q ss_pred eEEEeccCCCCCcccccc
Q 046715 192 GMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm~ 209 (501)
-+|+-.|.||||||++|.
T Consensus 144 ~siii~G~t~sGKTt~ln 161 (312)
T COG0630 144 KSIIICGGTASGKTTLLN 161 (312)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 357889999999999993
No 290
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=41.75 E-value=10 Score=44.72 Aligned_cols=18 Identities=44% Similarity=0.839 Sum_probs=16.5
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
|+-.+.+|+||||||++|
T Consensus 475 n~n~~I~G~TGSGKS~l~ 492 (893)
T TIGR03744 475 NAHLLILGPTGAGKSATL 492 (893)
T ss_pred cccEEEECCCCCCHHHHH
Confidence 777889999999999998
No 291
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=41.73 E-value=11 Score=40.26 Aligned_cols=18 Identities=50% Similarity=0.885 Sum_probs=15.7
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...|...|++|+|||.|+
T Consensus 191 g~vi~lvGpnG~GKTTtl 208 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTT 208 (420)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356778899999999999
No 292
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=41.70 E-value=20 Score=38.30 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=25.4
Q ss_pred hhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..-++.+-+|....-|..|.-||||||.+
T Consensus 37 l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 37 LDRDLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 333467788999999999999999999987
No 293
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=41.65 E-value=10 Score=32.62 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=13.6
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
-|..+|.+|||||..+
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999876
No 294
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=41.41 E-value=11 Score=32.94 Aligned_cols=15 Identities=47% Similarity=0.771 Sum_probs=12.7
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+..|++|||||..-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999864
No 295
>PHA01747 putative ATP-dependent protease
Probab=41.32 E-value=16 Score=38.33 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=26.5
Q ss_pred hhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 178 MVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 178 ~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
-+-|+|+.-..+-|.-++=.|+.|+||||+.
T Consensus 177 RLiPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 177 RLLPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred hhhhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 3667888667788889999999999999987
No 296
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=41.30 E-value=16 Score=35.73 Aligned_cols=40 Identities=40% Similarity=0.453 Sum_probs=27.0
Q ss_pred eEEEeccCCCCCccccc------ccC-----CCCCCCchhHHHHHHhhccc
Q 046715 192 GMLAALGPSGSGKTHTI------FGC-----PREPGMVPIALKRIFKGTTK 231 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm------~G~-----~~~~GIipr~~~~LF~~~~~ 231 (501)
-+-..+|++|+|||.|+ +|. .-.+++=..++..||.-+..
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~ 83 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQ 83 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhh
Confidence 33456999999999998 332 13456777777777776655
No 297
>PRK13767 ATP-dependent helicase; Provisional
Probab=41.29 E-value=15 Score=43.11 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=17.3
Q ss_pred HHHhcCCCeEEEeccCCCCCccccc
Q 046715 184 EDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 184 ~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
..+++|.|+.| ..+||||||...
T Consensus 42 ~~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 42 PLIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHHcCCCEEE--ECCCCCcHHHHH
Confidence 34578988644 569999999864
No 298
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=41.24 E-value=12 Score=34.45 Aligned_cols=16 Identities=38% Similarity=0.783 Sum_probs=13.7
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999865
No 299
>PRK00300 gmk guanylate kinase; Provisional
Probab=41.08 E-value=12 Score=35.33 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=14.5
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...|...|++|||||..+
T Consensus 5 g~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346778899999999765
No 300
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=41.03 E-value=11 Score=35.54 Aligned_cols=15 Identities=47% Similarity=0.634 Sum_probs=12.7
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999988
No 301
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=40.92 E-value=18 Score=33.58 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=17.2
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
..++..|+-+|.+||||+..-
T Consensus 19 a~~~~pVlI~GE~GtGK~~lA 39 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKELLA 39 (168)
T ss_dssp TTSTS-EEEECSTTSSHHHHH
T ss_pred hCCCCCEEEEcCCCCcHHHHH
Confidence 477899999999999998754
No 302
>PRK14531 adenylate kinase; Provisional
Probab=40.83 E-value=12 Score=34.95 Aligned_cols=16 Identities=44% Similarity=0.681 Sum_probs=13.7
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
-|+.+|..|||||+.-
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999874
No 303
>PRK10867 signal recognition particle protein; Provisional
Probab=40.63 E-value=25 Score=37.82 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=15.5
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...|+..|.+|||||.|.
T Consensus 100 p~vI~~vG~~GsGKTTta 117 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTA 117 (433)
T ss_pred CEEEEEECCCCCcHHHHH
Confidence 456788899999999987
No 304
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=40.47 E-value=18 Score=34.72 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=21.3
Q ss_pred hHHHHHh-cCC--CeEEEeccCCCCCccccc
Q 046715 181 PLVEDFL-KGK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 181 plv~~~l-~G~--n~tI~aYGqTgSGKTyTm 208 (501)
+-+|.++ .|+ ..++..+|++|+|||+..
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 4467776 454 567888999999999866
No 305
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.18 E-value=17 Score=39.66 Aligned_cols=41 Identities=29% Similarity=0.339 Sum_probs=27.2
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCC-CeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGK-SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~-n~tI~aYGqTgSGKTyTm 208 (501)
.|+.|.+ |+.+... +...+-.|. ..+++-||+.|+|||.+.
T Consensus 16 ~f~dvVG----Qe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlA 57 (484)
T PRK14956 16 FFRDVIH----QDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIA 57 (484)
T ss_pred CHHHHhC----hHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5777765 5555543 333333444 456899999999999876
No 306
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=40.02 E-value=10 Score=40.06 Aligned_cols=16 Identities=44% Similarity=0.783 Sum_probs=12.5
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
-++..|.||||||.+|
T Consensus 17 ~~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 17 HILIIGATGSGKTQAI 32 (386)
T ss_dssp -EEEEE-TTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4678999999999877
No 307
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=39.89 E-value=20 Score=35.01 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=20.8
Q ss_pred hhHHHHHhc-CC--CeEEEeccCCCCCcccc
Q 046715 180 NPLVEDFLK-GK--SGMLAALGPSGSGKTHT 207 (501)
Q Consensus 180 ~plv~~~l~-G~--n~tI~aYGqTgSGKTyT 207 (501)
-+-+|.++. |+ ..+++.+|.+|||||.-
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~l 37 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIF 37 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHH
Confidence 344677665 44 67789999999999963
No 308
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=39.51 E-value=12 Score=34.82 Aligned_cols=16 Identities=44% Similarity=0.831 Sum_probs=13.7
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+-.|++|||||..+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999877
No 309
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=39.42 E-value=15 Score=40.56 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=29.6
Q ss_pred eecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 158 YQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 158 ~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+.||.+++.+..=.++.+. +..+ ...+..|+-+|.+||||++.-
T Consensus 192 ~~~~~~liG~s~~~~~~~~~-----~~~~-a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQ-----ARVV-ARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHHH-----HHHH-hCcCCCEEEECCCCccHHHHH
Confidence 36788888755433333322 2222 356788999999999999865
No 310
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=39.35 E-value=25 Score=41.22 Aligned_cols=17 Identities=53% Similarity=0.901 Sum_probs=15.1
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
+.++-+|+||+|||++.
T Consensus 597 ~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA 613 (852)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999987
No 311
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=39.11 E-value=21 Score=40.66 Aligned_cols=25 Identities=48% Similarity=0.683 Sum_probs=19.8
Q ss_pred hHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 181 PLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 181 plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+++.+| |.|+.|. =+||+|||+.-
T Consensus 69 eivq~AL-gkNtii~--lPTG~GKTfIA 93 (746)
T KOG0354|consen 69 ELVQPAL-GKNTIIA--LPTGSGKTFIA 93 (746)
T ss_pred HHhHHhh-cCCeEEE--eecCCCccchH
Confidence 5788889 9997554 49999999754
No 312
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=39.11 E-value=9.7 Score=36.91 Aligned_cols=12 Identities=33% Similarity=0.473 Sum_probs=11.0
Q ss_pred ccCCCCCccccc
Q 046715 197 LGPSGSGKTHTI 208 (501)
Q Consensus 197 YGqTgSGKTyTm 208 (501)
-|++|||||+++
T Consensus 5 ~G~sGSGKTTla 16 (220)
T cd02025 5 AGSVAVGKSTTA 16 (220)
T ss_pred eCCCCCCHHHHH
Confidence 499999999998
No 313
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=39.07 E-value=12 Score=39.11 Aligned_cols=13 Identities=62% Similarity=1.009 Sum_probs=11.7
Q ss_pred eccCCCCCccccc
Q 046715 196 ALGPSGSGKTHTI 208 (501)
Q Consensus 196 aYGqTgSGKTyTm 208 (501)
-.|++|||||++|
T Consensus 36 lLGPSGcGKTTlL 48 (352)
T COG3842 36 LLGPSGCGKTTLL 48 (352)
T ss_pred EECCCCCCHHHHH
Confidence 4599999999998
No 314
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.85 E-value=18 Score=39.74 Aligned_cols=42 Identities=29% Similarity=0.287 Sum_probs=26.9
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.||.|.+ |+.+.+. +...+.. ......++-||+.|+|||.+.
T Consensus 12 ~~~dvvG----q~~v~~~-L~~~i~~--~~l~ha~Lf~GppGtGKTTlA 53 (504)
T PRK14963 12 TFDEVVG----QEHVKEV-LLAALRQ--GRLGHAYLFSGPRGVGKTTTA 53 (504)
T ss_pred CHHHhcC----hHHHHHH-HHHHHHc--CCCCeEEEEECCCCCCHHHHH
Confidence 5788775 5555443 2333322 223456799999999999877
No 315
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=38.66 E-value=15 Score=35.37 Aligned_cols=16 Identities=50% Similarity=0.945 Sum_probs=13.9
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+...|++|+|||..+
T Consensus 33 ~vv~lGpSGcGKTTLL 48 (259)
T COG4525 33 LVVVLGPSGCGKTTLL 48 (259)
T ss_pred EEEEEcCCCccHHHHH
Confidence 4678999999999876
No 316
>PRK01172 ski2-like helicase; Provisional
Probab=38.65 E-value=18 Score=41.00 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=20.8
Q ss_pred CCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccc
Q 046715 168 DSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHT 207 (501)
Q Consensus 168 ~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyT 207 (501)
..-|.+++. .+.+|.| ++..++||||||..
T Consensus 24 ~~~Q~~ai~--------~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 24 YDHQRMAIE--------QLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred CHHHHHHHH--------HHhcCCc--EEEECCCCchHHHH
Confidence 335655554 3467776 57778999999975
No 317
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=38.58 E-value=18 Score=33.52 Aligned_cols=26 Identities=38% Similarity=0.581 Sum_probs=19.9
Q ss_pred hHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 181 PLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 181 plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+-+...+.| -+++-.|++|.|||..+
T Consensus 27 ~~l~~~l~~--k~~vl~G~SGvGKSSLi 52 (161)
T PF03193_consen 27 EELKELLKG--KTSVLLGQSGVGKSSLI 52 (161)
T ss_dssp HHHHHHHTT--SEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcC--CEEEEECCCCCCHHHHH
Confidence 344566777 56777899999999876
No 318
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=38.53 E-value=14 Score=34.09 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=13.5
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|..|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999876
No 319
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=38.49 E-value=13 Score=29.40 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=12.3
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
++.+|..|+|||.+.
T Consensus 2 ~~~~g~~G~Gktt~~ 16 (99)
T cd01983 2 IVVTGKGGVGKTTLA 16 (99)
T ss_pred EEEECCCCCCHHHHH
Confidence 456688899999987
No 320
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=38.48 E-value=15 Score=36.85 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=16.2
Q ss_pred cCCC--eEEEeccCCCCCccccc
Q 046715 188 KGKS--GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n--~tI~aYGqTgSGKTyTm 208 (501)
-|.+ --|++||+.|+|||..-
T Consensus 206 lgidppkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHH
Confidence 3554 35899999999999654
No 321
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=38.44 E-value=15 Score=40.76 Aligned_cols=17 Identities=47% Similarity=0.868 Sum_probs=14.4
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
-..+-.|+.|+|||||+
T Consensus 202 ~l~~I~GPPGTGKT~Tl 218 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTL 218 (649)
T ss_pred CceEeeCCCCCCceeeH
Confidence 34566899999999999
No 322
>PTZ00110 helicase; Provisional
Probab=38.32 E-value=19 Score=39.84 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=19.3
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+..++.|.|. ++.++||||||.+.
T Consensus 160 aip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 160 GWPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHHhcCCCE--EEEeCCCChHHHHH
Confidence 35567889876 56689999999764
No 323
>PRK14532 adenylate kinase; Provisional
Probab=38.31 E-value=15 Score=34.19 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.6
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|..|||||+.-
T Consensus 2 ~i~~~G~pGsGKsT~a 17 (188)
T PRK14532 2 NLILFGPPAAGKGTQA 17 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999764
No 324
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=38.29 E-value=13 Score=38.51 Aligned_cols=15 Identities=47% Similarity=0.895 Sum_probs=13.0
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
+.-.|++|+|||++|
T Consensus 32 ~vllGPSGcGKSTlL 46 (338)
T COG3839 32 VVLLGPSGCGKSTLL 46 (338)
T ss_pred EEEECCCCCCHHHHH
Confidence 456699999999998
No 325
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=38.23 E-value=23 Score=33.68 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=21.9
Q ss_pred hhHHHHHhc-CC--CeEEEeccCCCCCccccc
Q 046715 180 NPLVEDFLK-GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 180 ~plv~~~l~-G~--n~tI~aYGqTgSGKTyTm 208 (501)
-+-+|.++. |+ ...+..+|.+|||||...
T Consensus 5 i~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 5 CKGLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred hhHHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 345677785 54 345789999999999876
No 326
>PRK06851 hypothetical protein; Provisional
Probab=38.21 E-value=17 Score=38.18 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=22.3
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+.+++++|.+-.++.-|..|+|||++|
T Consensus 21 ~~~~~~~~~~~~~il~G~pGtGKStl~ 47 (367)
T PRK06851 21 LYDSIIDGANRIFILKGGPGTGKSTLM 47 (367)
T ss_pred hhhhhccccceEEEEECCCCCCHHHHH
Confidence 445566777888999999999999998
No 327
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=38.08 E-value=13 Score=33.14 Aligned_cols=15 Identities=40% Similarity=0.758 Sum_probs=11.9
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+..|++|||||..+
T Consensus 2 i~i~GpsGsGKstl~ 16 (137)
T cd00071 2 IVLSGPSGVGKSTLL 16 (137)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999654
No 328
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=37.86 E-value=28 Score=39.62 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=16.1
Q ss_pred CCeEEEeccCCCCCccccc
Q 046715 190 KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 190 ~n~tI~aYGqTgSGKTyTm 208 (501)
...-|+-||+.|+||||..
T Consensus 700 ~~~giLLyGppGcGKT~la 718 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLA 718 (952)
T ss_pred cccceEEECCCCCcHHHHH
Confidence 3456999999999999976
No 329
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=37.84 E-value=24 Score=36.28 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=26.5
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCC-CeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGK-SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~-n~tI~aYGqTgSGKTyTm 208 (501)
.|+.+.+ |+++.+. +...+-.|. ...++-||+.|+|||.+.
T Consensus 12 ~~~~iig----~~~~~~~----l~~~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 12 TFEDVIG----QEHIVQT----LKNAIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred cHhhccC----cHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3666654 5555443 333333453 557899999999999876
No 330
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=37.78 E-value=15 Score=37.50 Aligned_cols=16 Identities=25% Similarity=0.690 Sum_probs=13.7
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|+||||||-.-
T Consensus 6 ii~I~GpTasGKS~LA 21 (300)
T PRK14729 6 IVFIFGPTAVGKSNIL 21 (300)
T ss_pred EEEEECCCccCHHHHH
Confidence 6888999999999744
No 331
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=37.68 E-value=14 Score=36.39 Aligned_cols=17 Identities=35% Similarity=0.708 Sum_probs=14.6
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
-++..+|++|||||..+
T Consensus 31 e~~~i~G~nGsGKSTL~ 47 (235)
T COG1122 31 ERVLLIGPNGSGKSTLL 47 (235)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46788999999999876
No 332
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=37.67 E-value=17 Score=40.01 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=29.7
Q ss_pred eecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 158 YQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 158 ~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+.||.+++.+..=..+.+. + .. +...+.-|+-+|.+||||++..
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~----~-~~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQ----A-RK-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred cccccceeECCHHHHHHHHH----H-HH-HhCCCCCEEEECCCCccHHHHH
Confidence 46899988765433333332 1 22 2335777999999999999876
No 333
>CHL00195 ycf46 Ycf46; Provisional
Probab=37.64 E-value=13 Score=40.65 Aligned_cols=18 Identities=33% Similarity=0.422 Sum_probs=15.5
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
.-.|+-||+.|+|||++.
T Consensus 259 pkGILL~GPpGTGKTllA 276 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTA 276 (489)
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356999999999999876
No 334
>PTZ00014 myosin-A; Provisional
Probab=37.59 E-value=28 Score=40.62 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=24.2
Q ss_pred HHHhhhhhHHHHHh-cCCCeEEEeccCCCCCccccc
Q 046715 174 VYEKMVNPLVEDFL-KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 174 vf~~~v~plv~~~l-~G~n~tI~aYGqTgSGKTyTm 208 (501)
||.- +......++ .+.|-||+.-|.+|||||.+.
T Consensus 166 ifav-A~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 166 VFTT-ARRALENLHGVKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred HHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 5543 333333443 689999999999999999654
No 335
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=37.48 E-value=19 Score=40.36 Aligned_cols=41 Identities=27% Similarity=0.407 Sum_probs=26.8
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCC-CeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGK-SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~-n~tI~aYGqTgSGKTyTm 208 (501)
+||.|.+ |+.+- .-+...+-.|. .-.++-||+.|+|||.+.
T Consensus 22 ~f~dliG----q~~~v----~~L~~~~~~gri~ha~L~~Gp~GvGKTt~A 63 (598)
T PRK09111 22 TFDDLIG----QEAMV----RTLTNAFETGRIAQAFMLTGVRGVGKTTTA 63 (598)
T ss_pred CHHHhcC----cHHHH----HHHHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 5777776 33333 22333334564 447888999999999886
No 336
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=37.44 E-value=14 Score=33.48 Aligned_cols=16 Identities=44% Similarity=0.783 Sum_probs=13.6
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|..+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999765
No 337
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.08 E-value=24 Score=36.65 Aligned_cols=41 Identities=29% Similarity=0.417 Sum_probs=26.9
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCC-CeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGK-SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~-n~tI~aYGqTgSGKTyTm 208 (501)
.||.|.+ |+++. ..+...+-.|. ...++-||+.|+|||++.
T Consensus 15 ~~~~iig----~~~~~----~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 15 TFDDVVG----QSHIT----NTLLNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred cHHhcCC----cHHHH----HHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5777764 44443 33333334564 457888999999999887
No 338
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=37.06 E-value=15 Score=33.75 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=13.0
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
++.+|++|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999765
No 339
>PRK06762 hypothetical protein; Provisional
Probab=36.91 E-value=16 Score=33.23 Aligned_cols=16 Identities=44% Similarity=0.607 Sum_probs=12.8
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|...|..|||||+.-
T Consensus 4 li~i~G~~GsGKST~A 19 (166)
T PRK06762 4 LIIIRGNSGSGKTTIA 19 (166)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999998744
No 340
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=36.70 E-value=18 Score=41.30 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=17.5
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
...+..|+-+|.+|||||+.-
T Consensus 396 a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 396 AQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred hCCCCCEEEECCCCcCHHHHH
Confidence 456778999999999999854
No 341
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=36.56 E-value=15 Score=35.76 Aligned_cols=15 Identities=40% Similarity=0.733 Sum_probs=11.9
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
++-+|+||+|||..-
T Consensus 4 ~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 4 YLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEE-STTSSHHHHH
T ss_pred EEEECCCCCChhHHH
Confidence 567899999999876
No 342
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.49 E-value=25 Score=38.34 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=26.8
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCC-CeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGK-SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~-n~tI~aYGqTgSGKTyTm 208 (501)
.||.|.++ +.+ +..+...+-.|. ...++-||+.|+|||++.
T Consensus 12 ~~~divGq----~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 12 TFSEVVGQ----DHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CHHHccCc----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 58888874 444 222333333443 356899999999999887
No 343
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=36.30 E-value=13 Score=31.35 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=12.7
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|.-.|.+|+|||..+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999866
No 344
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.20 E-value=22 Score=40.33 Aligned_cols=41 Identities=24% Similarity=0.360 Sum_probs=27.4
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCC-CeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGK-SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~-n~tI~aYGqTgSGKTyTm 208 (501)
.||.|++ |+.+ ++.+...+-.|. ...++-||+.|+|||.+.
T Consensus 13 tFddVIG----Qe~v----v~~L~~aI~~grl~HAyLF~GPpGvGKTTlA 54 (702)
T PRK14960 13 NFNELVG----QNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIA 54 (702)
T ss_pred CHHHhcC----cHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5888887 4443 223333333453 567899999999999876
No 345
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=36.07 E-value=21 Score=35.38 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=14.6
Q ss_pred CeEEEeccCCCCCcccc
Q 046715 191 SGMLAALGPSGSGKTHT 207 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyT 207 (501)
..+++.+|.+|+|||.-
T Consensus 36 gs~~lI~G~pGtGKT~l 52 (259)
T TIGR03878 36 YSVINITGVSDTGKSLM 52 (259)
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 57788999999999963
No 346
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=35.84 E-value=15 Score=42.38 Aligned_cols=18 Identities=44% Similarity=0.739 Sum_probs=16.5
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
|.-++..|.||||||+++
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 677889999999999998
No 347
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.81 E-value=22 Score=40.09 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=27.7
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCC-CeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGK-SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~-n~tI~aYGqTgSGKTyTm 208 (501)
.||.|.+ |+.+.+. |...+-.|. ...++-||+.|+|||++.
T Consensus 14 ~f~dviG----Qe~vv~~----L~~~l~~~rl~ha~Lf~Gp~GvGKTtlA 55 (618)
T PRK14951 14 SFSEMVG----QEHVVQA----LTNALTQQRLHHAYLFTGTRGVGKTTVS 55 (618)
T ss_pred CHHHhcC----cHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5888885 5555443 333333443 456789999999999887
No 348
>PRK04040 adenylate kinase; Provisional
Probab=35.80 E-value=15 Score=34.64 Aligned_cols=16 Identities=31% Similarity=0.582 Sum_probs=14.2
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+.+|..|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4788999999999877
No 349
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.77 E-value=22 Score=39.12 Aligned_cols=41 Identities=24% Similarity=0.220 Sum_probs=26.9
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcC-CCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKG-KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G-~n~tI~aYGqTgSGKTyTm 208 (501)
.||.|.+ |+.|-+. +...+-.| ....++-||+.|+|||.+.
T Consensus 14 ~f~divG----q~~v~~~----L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A 55 (509)
T PRK14958 14 CFQEVIG----QAPVVRA----LSNALDQQYLHHAYLFTGTRGVGKTTIS 55 (509)
T ss_pred CHHHhcC----CHHHHHH----HHHHHHhCCCCeeEEEECCCCCCHHHHH
Confidence 5888876 5544433 33333333 4567899999999999765
No 350
>PRK03839 putative kinase; Provisional
Probab=35.70 E-value=15 Score=33.87 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=12.8
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+-.|..|||||+.-
T Consensus 3 I~l~G~pGsGKsT~~ 17 (180)
T PRK03839 3 IAITGTPGVGKTTVS 17 (180)
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999754
No 351
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=35.69 E-value=33 Score=36.89 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=15.9
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...|+..|.+|+|||+|.
T Consensus 100 ~~vi~lvG~~GvGKTTta 117 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTC 117 (429)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457888899999999998
No 352
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=35.58 E-value=16 Score=34.87 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=14.3
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
+++-+|++|||||..+
T Consensus 24 ~~~i~G~NGsGKTTLl 39 (204)
T cd03240 24 LTLIVGQNGAGKTTII 39 (204)
T ss_pred eEEEECCCCCCHHHHH
Confidence 7788999999999776
No 353
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=35.51 E-value=21 Score=39.51 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=18.4
Q ss_pred hcCCCeEEEeccCCCCCccccc
Q 046715 187 LKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 187 l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+...+..|+-+|.+||||++.-
T Consensus 238 ~A~s~~pVLI~GE~GTGKe~~A 259 (538)
T PRK15424 238 YARSSAAVLIQGETGTGKELAA 259 (538)
T ss_pred HhCCCCcEEEECCCCCCHHHHH
Confidence 3556889999999999998765
No 354
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=35.51 E-value=17 Score=32.14 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=16.9
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
...+.-|+-+|..||||++..
T Consensus 18 a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHHH
T ss_pred hCCCCcEEEEcCCCCCHHHHH
Confidence 366778899999999999865
No 355
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=35.42 E-value=24 Score=34.83 Aligned_cols=25 Identities=32% Similarity=0.692 Sum_probs=18.3
Q ss_pred HHHHhcC---CCeEEEeccCCCCCcccc
Q 046715 183 VEDFLKG---KSGMLAALGPSGSGKTHT 207 (501)
Q Consensus 183 v~~~l~G---~n~tI~aYGqTgSGKTyT 207 (501)
++.++.| ....++.||..|||||.-
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f 39 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIF 39 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHH
Confidence 4555553 367789999999999843
No 356
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=35.42 E-value=23 Score=41.80 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=19.7
Q ss_pred hhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+..+.-.+...-++..|+||||||.+.
T Consensus 460 I~~I~~d~~~~~~~d~Ll~adTGsGKT~va 489 (926)
T TIGR00580 460 IEEIKADMESPRPMDRLVCGDVGFGKTEVA 489 (926)
T ss_pred HHHHHhhhcccCcCCEEEECCCCccHHHHH
Confidence 333444443444445789999999999765
No 357
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=35.41 E-value=17 Score=34.78 Aligned_cols=18 Identities=33% Similarity=0.840 Sum_probs=14.5
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
+..+.-.|++|||||..|
T Consensus 28 ~~~~~i~G~NGsGKSTll 45 (213)
T cd03279 28 NGLFLICGPTGAGKSTIL 45 (213)
T ss_pred cCEEEEECCCCCCHHHHH
Confidence 345667899999999876
No 358
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.41 E-value=18 Score=37.86 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=20.5
Q ss_pred HHhcCCCeEEEeccCCCCCccccc
Q 046715 185 DFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 185 ~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+-.|+.-++++.|++|+|||.-+
T Consensus 15 ~~KkG~~ftlmvvG~sGlGKsTfi 38 (366)
T KOG2655|consen 15 SVKKGFDFTLMVVGESGLGKSTFI 38 (366)
T ss_pred HHhcCCceEEEEecCCCccHHHHH
Confidence 345899999999999999998643
No 359
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=35.29 E-value=21 Score=40.96 Aligned_cols=40 Identities=30% Similarity=0.328 Sum_probs=32.1
Q ss_pred CchhHHHHhhhhhHHHHHh-cCCCeEEEeccCCCCCcccccc
Q 046715 169 SSQGEVYEKMVNPLVEDFL-KGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 169 ~sQ~evf~~~v~plv~~~l-~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
--|.|-|+-....+.-.+. .|.++||+|-.+ |+|||+-++
T Consensus 241 PHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~-GlGKTlq~I 281 (776)
T KOG0390|consen 241 PHQREGFEFLYKNLAGLIRPKNSGGCIMADEP-GLGKTLQCI 281 (776)
T ss_pred chHHHHHHHHHhhhhcccccCCCCceEeeCCC-CcchHHHHH
Confidence 3588888887777766666 499999999976 899998773
No 360
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=35.27 E-value=16 Score=39.01 Aligned_cols=17 Identities=41% Similarity=0.671 Sum_probs=15.4
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
+.|+-+|+||+|||+..
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 57999999999999877
No 361
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=35.27 E-value=16 Score=34.75 Aligned_cols=17 Identities=41% Similarity=0.458 Sum_probs=13.3
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|.-.|++|||||+.+
T Consensus 7 ~vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVA 23 (207)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34567799999999755
No 362
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=35.21 E-value=23 Score=34.90 Aligned_cols=28 Identities=50% Similarity=0.856 Sum_probs=20.3
Q ss_pred HHhcCCCeEE------EeccCCCCCcc---cccccCC
Q 046715 185 DFLKGKSGML------AALGPSGSGKT---HTIFGCP 212 (501)
Q Consensus 185 ~~l~G~n~tI------~aYGqTgSGKT---yTm~G~~ 212 (501)
.++.|.|-+| .-.|+.||||| ||+.|.+
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5677887765 45699999998 5666644
No 363
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.18 E-value=17 Score=36.25 Aligned_cols=72 Identities=24% Similarity=0.334 Sum_probs=47.6
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHh---cCCC--eEEEeccCCCCCcccccc--------------cC---CCCCCC
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFL---KGKS--GMLAALGPSGSGKTHTIF--------------GC---PREPGM 217 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l---~G~n--~tI~aYGqTgSGKTyTm~--------------G~---~~~~GI 217 (501)
.|..|=+-+..-++|-+.+--|+.+.-+ =|.+ -.++.||+.|+|||-..- |+ ....|=
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylge 232 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 232 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhcc
Confidence 3555666666666677666666665433 2443 358999999999985432 21 123477
Q ss_pred chhHHHHHHhhccc
Q 046715 218 VPIALKRIFKGTTK 231 (501)
Q Consensus 218 ipr~~~~LF~~~~~ 231 (501)
=||.++++|....+
T Consensus 233 gprmvrdvfrlake 246 (408)
T KOG0727|consen 233 GPRMVRDVFRLAKE 246 (408)
T ss_pred CcHHHHHHHHHHhc
Confidence 79999999987766
No 364
>PRK14527 adenylate kinase; Provisional
Probab=35.07 E-value=18 Score=33.92 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=14.5
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
-.|+.+|+.|||||...
T Consensus 7 ~~i~i~G~pGsGKsT~a 23 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQA 23 (191)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46889999999998765
No 365
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=34.99 E-value=23 Score=38.14 Aligned_cols=17 Identities=41% Similarity=0.786 Sum_probs=15.4
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
.-++.+|+||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 56889999999999988
No 366
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=34.92 E-value=22 Score=39.79 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=26.8
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcC-CCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKG-KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G-~n~tI~aYGqTgSGKTyTm 208 (501)
.|+.|.+ |+.+- ..+...+-.| ..-+++-||+.|+|||.++
T Consensus 14 ~F~dIIG----Qe~iv----~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA 55 (605)
T PRK05896 14 NFKQIIG----QELIK----KILVNAILNNKLTHAYIFSGPRGIGKTSIA 55 (605)
T ss_pred CHHHhcC----cHHHH----HHHHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 5787775 44333 2333333344 3457899999999999877
No 367
>PRK14530 adenylate kinase; Provisional
Probab=34.90 E-value=16 Score=34.96 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=13.6
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|++|||||+..
T Consensus 5 ~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 5 RILLLGAPGAGKGTQS 20 (215)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999765
No 368
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=34.79 E-value=25 Score=36.61 Aligned_cols=27 Identities=41% Similarity=0.781 Sum_probs=19.6
Q ss_pred hHHHHHhcCCC---eEEEeccCCCCCccccc
Q 046715 181 PLVEDFLKGKS---GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 181 plv~~~l~G~n---~tI~aYGqTgSGKTyTm 208 (501)
|+++..+.|.- -|| --|+||||||.-|
T Consensus 261 pvLNk~LkGhR~GElTv-lTGpTGsGKTTFl 290 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTV-LTGPTGSGKTTFL 290 (514)
T ss_pred hHHHHHhccCCCCceEE-EecCCCCCceeEe
Confidence 56677787763 233 3599999999876
No 369
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=34.57 E-value=22 Score=32.82 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=22.0
Q ss_pred hHHHHHhc-CCCeEEEeccCCCCCccccc
Q 046715 181 PLVEDFLK-GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 181 plv~~~l~-G~n~tI~aYGqTgSGKTyTm 208 (501)
.++..+.. .....|+..|..|||||..+
T Consensus 3 ~~~~~~~~~~~~~~ililGl~~sGKTtll 31 (175)
T PF00025_consen 3 SVLSKLKSKKKEIKILILGLDGSGKTTLL 31 (175)
T ss_dssp HHHHHCTTTTSEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcccCcEEEEEEECCCccchHHHH
Confidence 35566654 67888999999999999755
No 370
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=34.55 E-value=22 Score=42.18 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=20.5
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|..++.+.+. ++..|..|+||||+|
T Consensus 354 Av~~il~s~~v-~vv~G~AGTGKTT~l 379 (988)
T PRK13889 354 ALAHVTDGRDL-GVVVGYAGTGKSAML 379 (988)
T ss_pred HHHHHhcCCCe-EEEEeCCCCCHHHHH
Confidence 45667777664 458899999999987
No 371
>PRK04296 thymidine kinase; Provisional
Probab=34.49 E-value=13 Score=34.94 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=14.8
Q ss_pred EEEeccCCCCCccccccc
Q 046715 193 MLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm~G 210 (501)
.++-+|+.|+|||..+++
T Consensus 4 i~litG~~GsGKTT~~l~ 21 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQ 21 (190)
T ss_pred EEEEECCCCCHHHHHHHH
Confidence 567899999999977743
No 372
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=34.47 E-value=27 Score=39.50 Aligned_cols=82 Identities=20% Similarity=0.247 Sum_probs=46.6
Q ss_pred ccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhcCCCCcccCcchhhhhchhccCCCceE-----E----
Q 046715 336 NDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLRKPLQKHFQNSLLTRYLRDYLEGKKRM-----T---- 406 (501)
Q Consensus 336 ~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~~~~vpyRdSkLT~LL~dsLgGns~t-----~---- 406 (501)
..|+|.++=.|+.=- +-|-..-|+--+-|| +....+-||-...|-.++...|.|-... =
T Consensus 538 ~~sKLvvi~IaNTmd----------lPEr~l~nrvsSRlg--~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvar 605 (767)
T KOG1514|consen 538 KNSKLVVIAIANTMD----------LPERLLMNRVSSRLG--LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVAR 605 (767)
T ss_pred CCCceEEEEeccccc----------CHHHHhccchhhhcc--ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHH
Confidence 358888887777521 122222222222222 2245567899999999999999885100 0
Q ss_pred EEeecCCCCCChHHHHHHHHhHhhcccCc
Q 046715 407 LILTVKSGEEDYLDTSYLLRQASPYMKIK 435 (501)
Q Consensus 407 ~I~~isp~~~~~~eTl~TL~fa~ra~~Ik 435 (501)
=||.|| -++-..|.++.||..|.
T Consensus 606 kVAavS------GDaRraldic~RA~Eia 628 (767)
T KOG1514|consen 606 KVAAVS------GDARRALDICRRAAEIA 628 (767)
T ss_pred HHHhcc------ccHHHHHHHHHHHHHHh
Confidence 122232 34566788888887775
No 373
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=34.46 E-value=30 Score=30.50 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=16.0
Q ss_pred eEEEeccCCCCCccccccc
Q 046715 192 GMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm~G 210 (501)
..|+-+|.-|||||+-.-|
T Consensus 16 ~vi~L~GdLGaGKTtf~r~ 34 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRG 34 (123)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5688999999999987733
No 374
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=34.43 E-value=16 Score=37.10 Aligned_cols=13 Identities=54% Similarity=1.002 Sum_probs=11.5
Q ss_pred eccCCCCCccccc
Q 046715 196 ALGPSGSGKTHTI 208 (501)
Q Consensus 196 aYGqTgSGKTyTm 208 (501)
-.|+.|||||.+|
T Consensus 36 llG~NGAGKTTll 48 (293)
T COG1131 36 LLGPNGAGKTTLL 48 (293)
T ss_pred EECCCCCCHHHHH
Confidence 3499999999998
No 375
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=34.42 E-value=17 Score=34.65 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=20.6
Q ss_pred EEeccCCCCCcccccccCCCCCCCchhHHHHHHh
Q 046715 194 LAALGPSGSGKTHTIFGCPREPGMVPIALKRIFK 227 (501)
Q Consensus 194 I~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~ 227 (501)
|+.+|+.|||||+.---=.+..|+....+.+|+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHH
Confidence 6789999999987531111233555555555554
No 376
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=34.41 E-value=17 Score=38.77 Aligned_cols=18 Identities=39% Similarity=0.636 Sum_probs=15.5
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...|+.+|++|+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 366899999999999876
No 377
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=34.41 E-value=23 Score=40.76 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=26.4
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCC-CeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGK-SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~-n~tI~aYGqTgSGKTyTm 208 (501)
+||.|.+ |+.+-+. |...+-.|. ...++-||..|+|||.+.
T Consensus 14 tFdEVIG----Qe~Vv~~----L~~aL~~gRL~HAyLFtGPpGvGKTTlA 55 (830)
T PRK07003 14 DFASLVG----QEHVVRA----LTHALDGGRLHHAYLFTGTRGVGKTTLS 55 (830)
T ss_pred cHHHHcC----cHHHHHH----HHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 5888886 4444332 222222343 566789999999999875
No 378
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=34.35 E-value=36 Score=34.46 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=14.2
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+.-|.+|||||..|
T Consensus 3 ~vIiTGlSGaGKs~Al 18 (284)
T PF03668_consen 3 LVIITGLSGAGKSTAL 18 (284)
T ss_pred EEEEeCCCcCCHHHHH
Confidence 4678899999999998
No 379
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=34.28 E-value=16 Score=28.27 Aligned_cols=15 Identities=47% Similarity=0.651 Sum_probs=12.0
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+-.|..|||||...
T Consensus 2 i~i~G~~gsGKst~~ 16 (69)
T cd02019 2 IAITGGSGSGKSTVA 16 (69)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999998776
No 380
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=34.14 E-value=23 Score=40.85 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=19.6
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm~G 210 (501)
|..++.+ +..++..|..|+||||+|-+
T Consensus 361 v~~i~~s-~~~~il~G~aGTGKTtll~~ 387 (744)
T TIGR02768 361 VRHVTGS-GDIAVVVGRAGTGKSTMLKA 387 (744)
T ss_pred HHHHhcC-CCEEEEEecCCCCHHHHHHH
Confidence 4445554 34667889999999999844
No 381
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=34.11 E-value=26 Score=39.59 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=22.1
Q ss_pred chhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 170 SQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 170 sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|.++++.+...+ -+ +..+++-.+||+|||+..
T Consensus 1 ~Q~~~~~~i~~al----~~--~~~lliEA~TGtGKTlAY 33 (636)
T TIGR03117 1 EQALFYLNCLTSL----RQ--KRIGMLEASTGVGKTLAM 33 (636)
T ss_pred CHHHHHHHHHHHH----hc--CCeEEEEcCCCCcHHHHH
Confidence 3777776633322 23 356888999999999654
No 382
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=34.11 E-value=18 Score=36.26 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=13.5
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
-++.||+.|+|||..-
T Consensus 207 GvLmYGPPGTGKTlmA 222 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLMA 222 (424)
T ss_pred ceEeeCCCCCcHHHHH
Confidence 4899999999998643
No 383
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=34.08 E-value=22 Score=39.32 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=28.0
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
|.||.+++.+. ..+. +...+.. +...+..|+-+|.+||||++.-
T Consensus 209 ~~f~~iiG~S~----~m~~-~~~~i~~-~A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 209 YRLDDLLGASA----PMEQ-VRALVRL-YARSDATVLILGESGTGKELVA 252 (526)
T ss_pred cchhheeeCCH----HHHH-HHHHHHH-HhCCCCcEEEECCCCcCHHHHH
Confidence 56777776433 2222 2222222 3556889999999999998765
No 384
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=34.04 E-value=29 Score=35.11 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=21.7
Q ss_pred CCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHh
Q 046715 190 KSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFK 227 (501)
Q Consensus 190 ~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~ 227 (501)
.-+||++.|..|||||.-| +|...+|++
T Consensus 18 ~p~~ilVvGMAGSGKTTF~----------QrL~~hl~~ 45 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFM----------QRLNSHLHA 45 (366)
T ss_pred CCcEEEEEecCCCCchhHH----------HHHHHHHhh
Confidence 3579999999999999866 556666654
No 385
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=33.97 E-value=24 Score=35.77 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=22.5
Q ss_pred hhhHHHHHhcCC---CeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKGK---SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G~---n~tI~aYGqTgSGKTyTm 208 (501)
..+-++.++.|- ...+..||.+|||||..+
T Consensus 80 g~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~ 112 (310)
T TIGR02236 80 GSKELDELLGGGIETQAITEVFGEFGSGKTQIC 112 (310)
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 445577777642 556789999999999766
No 386
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=33.94 E-value=19 Score=38.66 Aligned_cols=17 Identities=47% Similarity=0.675 Sum_probs=13.6
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
+-|+..|+||||||+.-
T Consensus 227 SNvLllGPtGsGKTlla 243 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLA 243 (564)
T ss_pred ccEEEECCCCCchhHHH
Confidence 34788999999999643
No 387
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.87 E-value=18 Score=40.01 Aligned_cols=17 Identities=59% Similarity=1.095 Sum_probs=14.3
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|...|++|+|||+|+
T Consensus 351 ~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 351 GVIALVGPTGAGKTTTI 367 (559)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45666699999999998
No 388
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=33.70 E-value=18 Score=33.87 Aligned_cols=15 Identities=40% Similarity=0.800 Sum_probs=12.3
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+-.|++|||||+--
T Consensus 3 iiilG~pGaGK~T~A 17 (178)
T COG0563 3 ILILGPPGAGKSTLA 17 (178)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999998643
No 389
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.31 E-value=25 Score=37.23 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=25.5
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHh-cCC-CeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFL-KGK-SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l-~G~-n~tI~aYGqTgSGKTyTm 208 (501)
.||.|++ |+.+-+ .+.+++ +|. ...++-||+.|+|||.+.
T Consensus 14 ~~~eiiG----q~~~~~-----~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A 55 (397)
T PRK14955 14 KFADITA----QEHITR-----TIQNSLRMGRVGHGYIFSGLRGVGKTTAA 55 (397)
T ss_pred cHhhccC----hHHHHH-----HHHHHHHhCCcceeEEEECCCCCCHHHHH
Confidence 5888886 444432 233333 453 345777999999999765
No 390
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=33.29 E-value=23 Score=40.69 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=14.3
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+-||++|+|||+..
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34778999999999876
No 391
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=33.27 E-value=19 Score=34.88 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=13.4
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
...-.|+.|||||..|
T Consensus 25 ~~~i~GpNGsGKStll 40 (243)
T cd03272 25 HNVVVGRNGSGKSNFF 40 (243)
T ss_pred cEEEECCCCCCHHHHH
Confidence 4456799999999987
No 392
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=33.22 E-value=22 Score=38.72 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.8
Q ss_pred CCCeEEEeccCCCCCccccc
Q 046715 189 GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 189 G~n~tI~aYGqTgSGKTyTm 208 (501)
+....|+-||+.|+|||++-
T Consensus 274 ~~~~giLl~GpPGtGKT~lA 293 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLA 293 (494)
T ss_pred CCCCeeEEECCCCCCHHHHH
Confidence 44557999999999999875
No 393
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=33.18 E-value=17 Score=32.82 Aligned_cols=15 Identities=40% Similarity=0.481 Sum_probs=12.5
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+..|.+|||||+..
T Consensus 2 i~i~G~~GsGKSTla 16 (149)
T cd02027 2 IWLTGLSGSGKSTIA 16 (149)
T ss_pred EEEEcCCCCCHHHHH
Confidence 567799999998765
No 394
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=33.09 E-value=20 Score=35.55 Aligned_cols=39 Identities=31% Similarity=0.273 Sum_probs=24.6
Q ss_pred CCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 167 ADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 167 ~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
++++|....+. -..+-+ ..-....|+..|.||+|||.++
T Consensus 10 ~~~~~~~~~~~-~~~~~~--~~~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 10 PDAAQTKALEL-EAKGKE--ELDFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred cHHHHHHHHHH-HHHhhh--hccCCeEEEEECCCCCcHHHHH
Confidence 35556555544 222222 2344567889999999999886
No 395
>KOG0987 consensus DNA helicase PIF1/RRM3 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.88 E-value=35 Score=37.81 Aligned_cols=35 Identities=29% Similarity=0.492 Sum_probs=25.8
Q ss_pred CchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 169 SSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 169 ~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
..|..||+. ++..+.+..-..+| ||.-|+||||..
T Consensus 120 ~eqk~v~d~----~~~~v~~~~g~~ff-~g~~gtgKt~l~ 154 (540)
T KOG0987|consen 120 PEQKRVYDA----ILEAVENNLGGVFF-YGFGGTGKTYLL 154 (540)
T ss_pred HHHHHHHHH----HHHHHhccccceee-eccCCccceeeH
Confidence 468888873 34445555666777 999999999966
No 396
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.75 E-value=25 Score=39.80 Aligned_cols=41 Identities=22% Similarity=0.245 Sum_probs=27.2
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcC-CCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKG-KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G-~n~tI~aYGqTgSGKTyTm 208 (501)
+||.|++ |+.+.+ .|.+.+-.| ....++-||+.|.|||.+.
T Consensus 14 tFddVIG----Qe~vv~----~L~~al~~gRLpHA~LFtGP~GvGKTTLA 55 (700)
T PRK12323 14 DFTTLVG----QEHVVR----ALTHALEQQRLHHAYLFTGTRGVGKTTLS 55 (700)
T ss_pred cHHHHcC----cHHHHH----HHHHHHHhCCCceEEEEECCCCCCHHHHH
Confidence 5888887 444443 233333344 3556788999999999776
No 397
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=32.73 E-value=24 Score=36.50 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.2
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
+.-|+..|++|+|||...
T Consensus 64 ~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCcEEEEeCCCChHHHHH
Confidence 345888999999999876
No 398
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=32.68 E-value=16 Score=42.53 Aligned_cols=26 Identities=8% Similarity=-0.215 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCCeEEEEEecCCCCCC
Q 046715 67 KSSSATSSPSETLKVFLRIKPLIYPK 92 (501)
Q Consensus 67 ~~~~~~~~~~~~ikV~vRiRPl~~~E 92 (501)
..........-.+.+..++.|+...+
T Consensus 244 g~l~~L~~l~~e~~~t~~f~~~~~~~ 269 (811)
T PRK13873 244 GILDDLNRLAFPYRWSTRAICLDKTD 269 (811)
T ss_pred chhHHHhcCCccEEEEEEEEecCHHH
Confidence 33334444457888999999987655
No 399
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=32.61 E-value=14 Score=33.85 Aligned_cols=12 Identities=50% Similarity=0.786 Sum_probs=10.9
Q ss_pred ccCCCCCccccc
Q 046715 197 LGPSGSGKTHTI 208 (501)
Q Consensus 197 YGqTgSGKTyTm 208 (501)
.|.+|||||+.+
T Consensus 1 ~G~sGsGKSTla 12 (163)
T PRK11545 1 MGVSGSGKSAVA 12 (163)
T ss_pred CCCCCCcHHHHH
Confidence 499999999988
No 400
>PRK09401 reverse gyrase; Reviewed
Probab=32.59 E-value=26 Score=42.58 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=18.1
Q ss_pred HHHHHhcCCCeEEEeccCCCCCcccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHT 207 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyT 207 (501)
.+..++.|.|..+. ++||||||..
T Consensus 88 ~i~~il~g~dv~i~--ApTGsGKT~f 111 (1176)
T PRK09401 88 WAKRLLLGESFAII--APTGVGKTTF 111 (1176)
T ss_pred HHHHHHCCCcEEEE--cCCCCCHHHH
Confidence 45567899887554 5999999953
No 401
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=32.50 E-value=19 Score=33.56 Aligned_cols=16 Identities=38% Similarity=0.407 Sum_probs=13.9
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+...|.+|||||+.+
T Consensus 5 ~i~l~G~sGsGKSTl~ 20 (176)
T PRK09825 5 SYILMGVSGSGKSLIG 20 (176)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999999877
No 402
>PHA02774 E1; Provisional
Probab=32.27 E-value=28 Score=38.84 Aligned_cols=26 Identities=38% Similarity=0.673 Sum_probs=19.8
Q ss_pred HHHHhcCCC--eEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKS--GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n--~tI~aYGqTgSGKTyTm 208 (501)
+..++.|.- .||+-||+.|+||||--
T Consensus 424 lk~~l~~~PKknciv~~GPP~TGKS~fa 451 (613)
T PHA02774 424 LKDFLKGIPKKNCLVIYGPPDTGKSMFC 451 (613)
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 444555543 59999999999999865
No 403
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=32.20 E-value=30 Score=33.16 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=19.7
Q ss_pred HHHHHhc-CC--CeEEEeccCCCCCccccc
Q 046715 182 LVEDFLK-GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~-G~--n~tI~aYGqTgSGKTyTm 208 (501)
-+|.++. |+ ...++-+|.+|+|||.-.
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~ 33 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFS 33 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3566774 53 567778999999998754
No 404
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=32.03 E-value=27 Score=36.42 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=21.1
Q ss_pred HHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 175 YEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 175 f~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
|...+.+.++......+. +.-.|.||||||++|
T Consensus 126 wr~~~~~~~~~~~~~~~~-ivl~G~TGsGKT~iL 158 (345)
T PRK11784 126 YRRFVIDTLEEAPAQFPL-VVLGGNTGSGKTELL 158 (345)
T ss_pred HHHhhHHHHhhhcccCce-EecCCCCcccHHHHH
Confidence 333344555544344443 557799999999988
No 405
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=31.98 E-value=18 Score=42.05 Aligned_cols=18 Identities=50% Similarity=0.818 Sum_probs=15.3
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
.+-.+.+|+||||||.++
T Consensus 426 ~g~~~I~G~tGsGKS~l~ 443 (789)
T PRK13853 426 VGMTAIFGPIGRGKTTLM 443 (789)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 355778999999999987
No 406
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=31.76 E-value=37 Score=39.85 Aligned_cols=18 Identities=44% Similarity=0.700 Sum_probs=15.4
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
.+.++-+|++|+|||++.
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA 612 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELA 612 (852)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 367788899999999877
No 407
>PRK06851 hypothetical protein; Provisional
Probab=31.72 E-value=28 Score=36.65 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.3
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.++.++++.+-.++.-|.+|+|||..|
T Consensus 205 ~~~~l~~~~~~~~~i~G~pG~GKstl~ 231 (367)
T PRK06851 205 FVPSLTEGVKNRYFLKGRPGTGKSTML 231 (367)
T ss_pred hHHhHhcccceEEEEeCCCCCcHHHHH
Confidence 566777888888999999999999887
No 408
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=31.65 E-value=29 Score=31.22 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=16.2
Q ss_pred CCCeEEEeccCCCCCccccc
Q 046715 189 GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 189 G~n~tI~aYGqTgSGKTyTm 208 (501)
+....|...|++|.|||..+
T Consensus 100 ~~~~~v~~~G~~nvGKStli 119 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSII 119 (157)
T ss_pred ccceEEEEEeCCCCChHHHH
Confidence 34567778999999999876
No 409
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=31.58 E-value=1e+02 Score=35.20 Aligned_cols=9 Identities=44% Similarity=0.962 Sum_probs=4.5
Q ss_pred CCCCCCCcc
Q 046715 5 SPPSTCPKT 13 (501)
Q Consensus 5 ~~~~~~~~~ 13 (501)
.+|+|-|.+
T Consensus 283 pppap~p~~ 291 (830)
T KOG1923|consen 283 PPPAPLPHT 291 (830)
T ss_pred CCCCCCCCc
Confidence 344555555
No 410
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=31.51 E-value=19 Score=42.19 Aligned_cols=18 Identities=44% Similarity=0.532 Sum_probs=15.5
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
|.-++..|.||||||++|
T Consensus 449 N~N~~I~G~sGsGKS~l~ 466 (844)
T PRK13721 449 NYNMAVCGTSGAGKTGLI 466 (844)
T ss_pred cccEEEEcCCCCCHHHHH
Confidence 445788899999999998
No 411
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=31.45 E-value=20 Score=33.10 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=15.0
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+..|++|||||...
T Consensus 5 ~~I~liG~~GaGKStl~ 21 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIG 21 (172)
T ss_pred CEEEEECCCCcCHHHHH
Confidence 46899999999999877
No 412
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=31.45 E-value=19 Score=38.66 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=26.2
Q ss_pred hcCCCeEEEeccCCCCCcccccccCCC----CCCCchhHHHHHHhhccc
Q 046715 187 LKGKSGMLAALGPSGSGKTHTIFGCPR----EPGMVPIALKRIFKGTTK 231 (501)
Q Consensus 187 l~G~n~tI~aYGqTgSGKTyTm~G~~~----~~GIipr~~~~LF~~~~~ 231 (501)
=.++|. +-.|++|+||||...+-.. ..| -.-.+..||..+..
T Consensus 207 e~~~Nl--i~lGp~GTGKThla~~l~~~~a~~sG-~f~T~a~Lf~~L~~ 252 (449)
T TIGR02688 207 EPNYNL--IELGPKGTGKSYIYNNLSPYVILISG-GTITVAKLFYNIST 252 (449)
T ss_pred hcCCcE--EEECCCCCCHHHHHHHHhHHHHHHcC-CcCcHHHHHHHHHH
Confidence 366775 5679999999988755211 235 33445566665554
No 413
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=31.42 E-value=24 Score=40.91 Aligned_cols=16 Identities=44% Similarity=0.711 Sum_probs=13.7
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.++-||++|+|||+..
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999999765
No 414
>PRK05480 uridine/cytidine kinase; Provisional
Probab=31.42 E-value=24 Score=33.43 Aligned_cols=17 Identities=41% Similarity=0.520 Sum_probs=13.8
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
-.|.--|.+|||||+..
T Consensus 7 ~iI~I~G~sGsGKTTl~ 23 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVA 23 (209)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45667799999999776
No 415
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=31.35 E-value=29 Score=37.78 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=21.2
Q ss_pred hHHHHHhcC---CCeEEEeccCCCCCcccc
Q 046715 181 PLVEDFLKG---KSGMLAALGPSGSGKTHT 207 (501)
Q Consensus 181 plv~~~l~G---~n~tI~aYGqTgSGKTyT 207 (501)
+=+|.++.| .+.+++.+|++|||||.-
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~l 37 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLF 37 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHH
Confidence 446777764 478899999999999943
No 416
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=31.26 E-value=29 Score=38.00 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=22.4
Q ss_pred hhhHHHHHhcC---CCeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKG---KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G---~n~tI~aYGqTgSGKTyTm 208 (501)
+-+-+|.++.| ....++.+|.+|+|||.-.
T Consensus 16 GI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~ 48 (509)
T PRK09302 16 GIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFA 48 (509)
T ss_pred CchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHH
Confidence 44456777754 4678899999999999644
No 417
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=31.22 E-value=38 Score=34.74 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=23.7
Q ss_pred hhhhHHHHHhcC-C--CeEEEeccCCCCCccccc
Q 046715 178 MVNPLVEDFLKG-K--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 178 ~v~plv~~~l~G-~--n~tI~aYGqTgSGKTyTm 208 (501)
++-+-+|.+|.| + ...+..||+.|||||.-.
T Consensus 80 TG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~ 113 (313)
T TIGR02238 80 TGSQALDGILGGGIESMSITEVFGEFRCGKTQLS 113 (313)
T ss_pred CCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHH
Confidence 356678888875 3 455679999999999765
No 418
>PTZ00301 uridine kinase; Provisional
Probab=31.12 E-value=16 Score=35.17 Aligned_cols=14 Identities=43% Similarity=0.560 Sum_probs=11.1
Q ss_pred EeccCCCCCccccc
Q 046715 195 AALGPSGSGKTHTI 208 (501)
Q Consensus 195 ~aYGqTgSGKTyTm 208 (501)
---|.+|||||+.-
T Consensus 7 gIaG~SgSGKTTla 20 (210)
T PTZ00301 7 GISGASGSGKSSLS 20 (210)
T ss_pred EEECCCcCCHHHHH
Confidence 34599999999865
No 419
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.02 E-value=30 Score=38.69 Aligned_cols=41 Identities=29% Similarity=0.302 Sum_probs=26.7
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcC-CCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKG-KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G-~n~tI~aYGqTgSGKTyTm 208 (501)
.||.|.+ |+.+-+. +...+-.| ....++-||+.|+|||.+.
T Consensus 14 ~f~~iiG----q~~v~~~----L~~~i~~~~~~hayLf~Gp~G~GKtt~A 55 (576)
T PRK14965 14 TFSDLTG----QEHVSRT----LQNAIDTGRVAHAFLFTGARGVGKTSTA 55 (576)
T ss_pred CHHHccC----cHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5787775 4444433 33333355 3556778999999999876
No 420
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=30.91 E-value=20 Score=38.38 Aligned_cols=17 Identities=35% Similarity=0.648 Sum_probs=14.7
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
.-|+.+|++|+|||+..
T Consensus 48 ~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIA 64 (441)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46889999999999765
No 421
>PRK00279 adk adenylate kinase; Reviewed
Probab=30.84 E-value=21 Score=34.12 Aligned_cols=15 Identities=47% Similarity=0.778 Sum_probs=13.0
Q ss_pred EEEeccCCCCCcccc
Q 046715 193 MLAALGPSGSGKTHT 207 (501)
Q Consensus 193 tI~aYGqTgSGKTyT 207 (501)
.|+.+|+.|||||..
T Consensus 2 ~I~v~G~pGsGKsT~ 16 (215)
T PRK00279 2 RLILLGPPGAGKGTQ 16 (215)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999965
No 422
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=30.74 E-value=22 Score=40.20 Aligned_cols=20 Identities=40% Similarity=0.517 Sum_probs=16.6
Q ss_pred CeEEEeccCCCCCccccccc
Q 046715 191 SGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm~G 210 (501)
.+-++..|..|||||.||..
T Consensus 14 ~~~~~V~Ag~GSGKT~~L~~ 33 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVITN 33 (664)
T ss_pred CCCEEEEecCCCCHHHHHHH
Confidence 45578889999999999954
No 423
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=30.70 E-value=25 Score=37.77 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=15.6
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...|+..|.+|||||.|.
T Consensus 99 p~vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTC 116 (428)
T ss_pred CEEEEEECCCCCcHHHHH
Confidence 457888899999999996
No 424
>PRK10689 transcription-repair coupling factor; Provisional
Probab=30.62 E-value=35 Score=41.34 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=22.6
Q ss_pred CCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 167 ADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 167 ~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+...|.+.+..+...+ -.+...-++++|+||||||-+.
T Consensus 601 ~T~~Q~~aI~~il~d~----~~~~~~d~Ll~a~TGsGKT~va 638 (1147)
T PRK10689 601 TTPDQAQAINAVLSDM----CQPLAMDRLVCGDVGFGKTEVA 638 (1147)
T ss_pred CCHHHHHHHHHHHHHh----hcCCCCCEEEEcCCCcCHHHHH
Confidence 4445655554433322 2233345789999999999643
No 425
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=30.62 E-value=22 Score=32.53 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=12.8
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
++..|.+|+|||.+.
T Consensus 3 ~~~~G~~G~GKTt~~ 17 (173)
T cd03115 3 ILLVGLQGVGKTTTA 17 (173)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999987
No 426
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=30.62 E-value=20 Score=32.76 Aligned_cols=14 Identities=50% Similarity=0.771 Sum_probs=11.8
Q ss_pred EeccCCCCCccccc
Q 046715 195 AALGPSGSGKTHTI 208 (501)
Q Consensus 195 ~aYGqTgSGKTyTm 208 (501)
...|.+|||||+.+
T Consensus 3 ~i~G~~gsGKTtl~ 16 (155)
T TIGR00176 3 QIVGPKNSGKTTLI 16 (155)
T ss_pred EEECCCCCCHHHHH
Confidence 44599999999877
No 427
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=30.60 E-value=21 Score=35.96 Aligned_cols=17 Identities=47% Similarity=0.858 Sum_probs=15.2
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
-.+..+|++|+|||.++
T Consensus 76 ~~i~~~G~~g~GKTtl~ 92 (270)
T PRK06731 76 QTIALIGPTGVGKTTTL 92 (270)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 47788899999999988
No 428
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=30.54 E-value=34 Score=31.74 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=18.6
Q ss_pred HHhcC-CCeEEEeccCCCCCccccc
Q 046715 185 DFLKG-KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 185 ~~l~G-~n~tI~aYGqTgSGKTyTm 208 (501)
.+-.| ...+++-||+.|.|||...
T Consensus 7 ~i~~~~~~~~~L~~G~~G~gkt~~a 31 (188)
T TIGR00678 7 ALEKGRLAHAYLFAGPEGVGKELLA 31 (188)
T ss_pred HHHcCCCCeEEEEECCCCCCHHHHH
Confidence 33455 4567888999999999877
No 429
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=30.43 E-value=36 Score=34.58 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=18.9
Q ss_pred eEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhh
Q 046715 192 GMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKG 228 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~ 228 (501)
..|---|++|||||+++ +.+..++..
T Consensus 63 ~IIGIaG~~GSGKSTla-----------r~L~~ll~~ 88 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTA-----------RILQALLSR 88 (290)
T ss_pred EEEEEECCCCCCHHHHH-----------HHHHHHHhh
Confidence 34555699999999988 456666653
No 430
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=30.30 E-value=35 Score=35.21 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=24.6
Q ss_pred hhhhHHHHHhc--CC--CeEEEeccCCCCCccccc
Q 046715 178 MVNPLVEDFLK--GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 178 ~v~plv~~~l~--G~--n~tI~aYGqTgSGKTyTm 208 (501)
+.-+-+|.++. |+ ...+..||+.|||||...
T Consensus 38 TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLa 72 (321)
T TIGR02012 38 TGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLA 72 (321)
T ss_pred CCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHH
Confidence 36677888885 66 356889999999999765
No 431
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=30.30 E-value=22 Score=40.09 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=14.8
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
.-++++|+||||||.++
T Consensus 212 ~H~lv~ApTgsGKgvg~ 228 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSV 228 (623)
T ss_pred ceEEEEeCCCCCcccee
Confidence 35789999999999976
No 432
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=30.24 E-value=24 Score=37.63 Aligned_cols=13 Identities=46% Similarity=0.823 Sum_probs=11.9
Q ss_pred EEEeccCCCCCcc
Q 046715 193 MLAALGPSGSGKT 205 (501)
Q Consensus 193 tI~aYGqTgSGKT 205 (501)
-|+.||+.|+|||
T Consensus 386 NilfyGPPGTGKT 398 (630)
T KOG0742|consen 386 NILFYGPPGTGKT 398 (630)
T ss_pred heeeeCCCCCCch
Confidence 4889999999998
No 433
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=30.18 E-value=23 Score=35.59 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=13.6
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|..|||||+.-
T Consensus 4 liil~G~pGSGKSTla 19 (300)
T PHA02530 4 IILTVGVPGSGKSTWA 19 (300)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788999999998764
No 434
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=30.15 E-value=28 Score=39.03 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=17.3
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..++.. ...+..|..|||||||+
T Consensus 154 ~~~al~~--~~~vitGgpGTGKTt~v 177 (586)
T TIGR01447 154 VALALKS--NFSLITGGPGTGKTTTV 177 (586)
T ss_pred HHHHhhC--CeEEEEcCCCCCHHHHH
Confidence 4445543 45566889999999997
No 435
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=30.14 E-value=19 Score=37.06 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=12.5
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
++..++||||||.+.
T Consensus 2 vvi~apTGsGKT~~~ 16 (358)
T TIGR01587 2 LVIEAPTGYGKTEAA 16 (358)
T ss_pred EEEEeCCCCCHHHHH
Confidence 567899999999764
No 436
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=30.06 E-value=25 Score=36.10 Aligned_cols=16 Identities=38% Similarity=0.657 Sum_probs=14.2
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+-+|+|+||||..-
T Consensus 5 ~i~I~GPTAsGKT~la 20 (308)
T COG0324 5 LIVIAGPTASGKTALA 20 (308)
T ss_pred EEEEECCCCcCHHHHH
Confidence 5788999999999876
No 437
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=30.00 E-value=30 Score=42.06 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=19.2
Q ss_pred hHHHHHhcCCCeEEEeccCCCCCcccc
Q 046715 181 PLVEDFLKGKSGMLAALGPSGSGKTHT 207 (501)
Q Consensus 181 plv~~~l~G~n~tI~aYGqTgSGKTyT 207 (501)
..+..++.|.+.. +.++||||||+.
T Consensus 85 ~~i~~il~G~d~v--i~ApTGsGKT~f 109 (1171)
T TIGR01054 85 MWAKRVLRGDSFA--IIAPTGVGKTTF 109 (1171)
T ss_pred HHHHHHhCCCeEE--EECCCCCCHHHH
Confidence 3456788998754 567999999963
No 438
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=29.97 E-value=20 Score=39.93 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=13.4
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
-++.+|.||||||..|
T Consensus 178 h~li~G~tGsGKs~~i 193 (566)
T TIGR02759 178 HILIHGTTGSGKSVAI 193 (566)
T ss_pred ceEEEcCCCCCHHHHH
Confidence 4688999999999654
No 439
>PRK02496 adk adenylate kinase; Provisional
Probab=29.77 E-value=23 Score=32.83 Aligned_cols=15 Identities=47% Similarity=0.773 Sum_probs=12.8
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+..|+.|||||...
T Consensus 4 i~i~G~pGsGKst~a 18 (184)
T PRK02496 4 LIFLGPPGAGKGTQA 18 (184)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999998765
No 440
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=29.69 E-value=24 Score=32.50 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=14.0
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|++|||||...
T Consensus 4 ~i~l~G~~gsGKst~a 19 (175)
T cd00227 4 IIILNGGSSAGKSSIA 19 (175)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999765
No 441
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=29.63 E-value=33 Score=37.73 Aligned_cols=41 Identities=24% Similarity=0.303 Sum_probs=26.4
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCC-CeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGK-SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~-n~tI~aYGqTgSGKTyTm 208 (501)
.|+.+.+ |+.+... +...+..|. ...++-||+.|+|||.+.
T Consensus 19 ~f~dliG----q~~vv~~----L~~ai~~~ri~~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 19 NFAELQG----QEVLVKV----LSYTILNDRLAGGYLLTGIRGVGKTTSA 60 (507)
T ss_pred CHHHhcC----cHHHHHH----HHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 4666654 5554442 333334454 457899999999999887
No 442
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=29.47 E-value=23 Score=36.26 Aligned_cols=16 Identities=38% Similarity=0.694 Sum_probs=13.6
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|+||||||..-
T Consensus 6 ~i~i~GptgsGKt~la 21 (307)
T PRK00091 6 VIVIVGPTASGKTALA 21 (307)
T ss_pred EEEEECCCCcCHHHHH
Confidence 5788899999999754
No 443
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=29.46 E-value=31 Score=40.30 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=18.5
Q ss_pred hhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 180 NPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 180 ~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
..+++.+ +. |..++..|+||||||..+
T Consensus 8 ~~i~~~l-~~-~~~vIi~a~TGSGKTT~v 34 (819)
T TIGR01970 8 PALRDAL-AA-HPQVVLEAPPGAGKSTAV 34 (819)
T ss_pred HHHHHHH-Hc-CCcEEEECCCCCCHHHHH
Confidence 3344443 32 446788999999999765
No 444
>PLN02200 adenylate kinase family protein
Probab=29.44 E-value=25 Score=34.47 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=21.6
Q ss_pred eEEEeccCCCCCcccccccCCCCCCCchhHHHHHHh
Q 046715 192 GMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFK 227 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~ 227 (501)
..|+..|..|||||+---.=....|+....+.+|+.
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR 79 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLR 79 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHH
Confidence 468899999999998642111223444444444443
No 445
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=29.28 E-value=22 Score=36.02 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=14.8
Q ss_pred EEEeccCCCCCcccccc
Q 046715 193 MLAALGPSGSGKTHTIF 209 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm~ 209 (501)
.|+..|.+|||||..+-
T Consensus 8 ~i~i~G~~GsGKtt~~~ 24 (288)
T PRK05416 8 LVIVTGLSGAGKSVALR 24 (288)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 57889999999998873
No 446
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=29.19 E-value=39 Score=35.20 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=23.8
Q ss_pred hhhhHHHHHhcC---CCeEEEeccCCCCCccccc
Q 046715 178 MVNPLVEDFLKG---KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 178 ~v~plv~~~l~G---~n~tI~aYGqTgSGKTyTm 208 (501)
++-+-+|.+|.| ......-||..|||||.-.
T Consensus 110 TG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~ 143 (344)
T PLN03187 110 TGSQALDELLGGGIETRCITEAFGEFRSGKTQLA 143 (344)
T ss_pred CCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHH
Confidence 466778899875 2455679999999999754
No 447
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=29.17 E-value=21 Score=31.28 Aligned_cols=15 Identities=40% Similarity=0.508 Sum_probs=12.8
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|...|.+|+|||..+
T Consensus 2 i~l~G~~g~GKTtL~ 16 (170)
T cd01876 2 IAFAGRSNVGKSSLI 16 (170)
T ss_pred EEEEcCCCCCHHHHH
Confidence 466799999999877
No 448
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=29.11 E-value=23 Score=30.78 Aligned_cols=17 Identities=41% Similarity=0.849 Sum_probs=13.7
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..+.-.|+.|||||..+
T Consensus 12 ~~~~i~G~nGsGKStLl 28 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLL 28 (137)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CEEEEEccCCCccccce
Confidence 34567899999999876
No 449
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=29.09 E-value=24 Score=41.37 Aligned_cols=26 Identities=12% Similarity=-0.160 Sum_probs=18.5
Q ss_pred CCCCCCCCCCCCeEEEEEecCCCCCC
Q 046715 67 KSSSATSSPSETLKVFLRIKPLIYPK 92 (501)
Q Consensus 67 ~~~~~~~~~~~~ikV~vRiRPl~~~E 92 (501)
.....-......+.+..|..|+...+
T Consensus 291 g~ld~L~~l~~e~~~t~~f~~~~~~~ 316 (852)
T PRK13891 291 GILSALAELPIEYRWSSRFIFMDQHE 316 (852)
T ss_pred hHHHHHhcCCCcEEEEEEEEecCHHH
Confidence 33444445668899999999987655
No 450
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=29.00 E-value=24 Score=30.76 Aligned_cols=16 Identities=25% Similarity=0.518 Sum_probs=13.3
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|...|.+|+|||..+
T Consensus 5 ~i~~~G~~g~GKttl~ 20 (168)
T cd04163 5 FVAIVGRPNVGKSTLL 20 (168)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999999866
No 451
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=28.95 E-value=43 Score=37.89 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=30.1
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
|.|..|.+ |+++- ..++-.++++..+-|+-+|..|+|||...
T Consensus 1 ~pf~~ivG----q~~~~----~al~~~av~~~~g~vli~G~~GtgKs~la 42 (633)
T TIGR02442 1 FPFTAIVG----QEDLK----LALLLNAVDPRIGGVLIRGEKGTAKSTAA 42 (633)
T ss_pred CCcchhcC----hHHHH----HHHHHHhhCCCCCeEEEEcCCCCcHHHHH
Confidence 56777776 55444 44555566666667999999999999755
No 452
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.95 E-value=42 Score=38.43 Aligned_cols=44 Identities=25% Similarity=0.442 Sum_probs=29.6
Q ss_pred eeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 157 VYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 157 ~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
.+|.|+.+++ .|.++-+. +++.+-+|.++ +.=.+||+|||-+++
T Consensus 4 v~FPy~~~y~---~Q~~~m~~----v~~~l~~~~~~--llEsPTGtGKTlslL 47 (705)
T TIGR00604 4 VYFPYEKIYP---EQRSYMRD----LKRSLDRGDEA--ILEMPSGTGKTISLL 47 (705)
T ss_pred eecCCCCCCH---HHHHHHHH----HHHHhccCCce--EEeCCCCCCccHHHH
Confidence 4678887774 56655544 45555567664 458899999996653
No 453
>PRK14528 adenylate kinase; Provisional
Probab=28.65 E-value=24 Score=33.02 Aligned_cols=16 Identities=31% Similarity=0.630 Sum_probs=13.5
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
-|+..|+.|||||+..
T Consensus 3 ~i~i~G~pGsGKtt~a 18 (186)
T PRK14528 3 NIIFMGPPGAGKGTQA 18 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999998775
No 454
>PRK14738 gmk guanylate kinase; Provisional
Probab=28.58 E-value=28 Score=33.19 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=14.6
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...|+-.|++|+|||..+
T Consensus 13 ~~~ivi~GpsG~GK~tl~ 30 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVL 30 (206)
T ss_pred CeEEEEECcCCCCHHHHH
Confidence 345667899999999876
No 455
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=28.57 E-value=41 Score=34.34 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=22.4
Q ss_pred hhhHHHHHhcC-C--CeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKG-K--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G-~--n~tI~aYGqTgSGKTyTm 208 (501)
..+-++.++.| + ...+.-||++|||||...
T Consensus 87 g~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~ 119 (317)
T PRK04301 87 GSKELDELLGGGIETQSITEFYGEFGSGKTQIC 119 (317)
T ss_pred CCHHHHHHhcCCccCCcEEEEECCCCCCHhHHH
Confidence 44556777764 3 566789999999999766
No 456
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=28.55 E-value=31 Score=33.57 Aligned_cols=15 Identities=40% Similarity=0.725 Sum_probs=12.8
Q ss_pred EEEeccCCCCCcccc
Q 046715 193 MLAALGPSGSGKTHT 207 (501)
Q Consensus 193 tI~aYGqTgSGKTyT 207 (501)
.+|.+|+.||||++-
T Consensus 5 a~lV~GpAgSGKSTy 19 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTY 19 (273)
T ss_pred eEEEEccCCCCcchH
Confidence 578999999999853
No 457
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=28.55 E-value=25 Score=36.07 Aligned_cols=16 Identities=50% Similarity=0.966 Sum_probs=13.2
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+--+|++|||||.++
T Consensus 30 ~vaLlGpSGaGKsTlL 45 (345)
T COG1118 30 LVALLGPSGAGKSTLL 45 (345)
T ss_pred EEEEECCCCCcHHHHH
Confidence 3456799999999887
No 458
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=28.43 E-value=61 Score=35.34 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=23.6
Q ss_pred hhhHHHHHhcC-C--CeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKG-K--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G-~--n~tI~aYGqTgSGKTyTm 208 (501)
.-+-+|.++.| + .++++..|++|+|||...
T Consensus 248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~ 280 (484)
T TIGR02655 248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLV 280 (484)
T ss_pred ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHH
Confidence 55667888865 3 678899999999999744
No 459
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=28.41 E-value=25 Score=35.67 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=13.1
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+..|+||||||...
T Consensus 2 i~i~G~t~~GKs~la 16 (287)
T TIGR00174 2 IFIMGPTAVGKSQLA 16 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999765
No 460
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=28.35 E-value=24 Score=32.91 Aligned_cols=15 Identities=53% Similarity=0.767 Sum_probs=12.7
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|..-|.+|||||+..
T Consensus 2 i~i~G~sgsGKttla 16 (179)
T cd02028 2 VGIAGPSGSGKTTFA 16 (179)
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999877
No 461
>PRK13531 regulatory ATPase RavA; Provisional
Probab=28.35 E-value=35 Score=37.26 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=20.2
Q ss_pred hhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+.-++..++.|-+ |+-+|++|+|||+..
T Consensus 29 I~lll~aalag~h--VLL~GpPGTGKT~LA 56 (498)
T PRK13531 29 IRLCLLAALSGES--VFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHHccCCC--EEEECCCChhHHHHH
Confidence 4445555555544 678999999999876
No 462
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=28.22 E-value=24 Score=34.92 Aligned_cols=15 Identities=53% Similarity=0.813 Sum_probs=12.4
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
+..-|.+|||||..+
T Consensus 16 ~viIG~sGSGKT~li 30 (241)
T PF04665_consen 16 MVIIGKSGSGKTTLI 30 (241)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999876
No 463
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=27.76 E-value=43 Score=34.68 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=24.9
Q ss_pred hhhhhHHHHHhc--CC--CeEEEeccCCCCCccccc
Q 046715 177 KMVNPLVEDFLK--GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 177 ~~v~plv~~~l~--G~--n~tI~aYGqTgSGKTyTm 208 (501)
.++-+-+|.+|. |+ ...+..||+.|||||...
T Consensus 37 sTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLa 72 (325)
T cd00983 37 PTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLA 72 (325)
T ss_pred cCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 447778899887 55 456789999999999654
No 464
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=27.66 E-value=22 Score=41.52 Aligned_cols=19 Identities=37% Similarity=0.711 Sum_probs=16.4
Q ss_pred CCeEEEeccCCCCCccccc
Q 046715 190 KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 190 ~n~tI~aYGqTgSGKTyTm 208 (501)
-++-.+..|+||||||+.|
T Consensus 455 d~g~~~i~G~tGsGKS~l~ 473 (818)
T PRK13830 455 DVGHTLIFGPTGSGKSTLL 473 (818)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3556889999999999998
No 465
>PRK01184 hypothetical protein; Provisional
Probab=27.57 E-value=27 Score=32.22 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=12.8
Q ss_pred EEEeccCCCCCcccc
Q 046715 193 MLAALGPSGSGKTHT 207 (501)
Q Consensus 193 tI~aYGqTgSGKTyT 207 (501)
.|+..|..|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (184)
T PRK01184 3 IIGVVGMPGSGKGEF 17 (184)
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999984
No 466
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=27.56 E-value=25 Score=34.48 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=13.3
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+..|..|||||+..
T Consensus 2 Ivl~G~pGSGKST~a 16 (249)
T TIGR03574 2 IILTGLPGVGKSTFS 16 (249)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678899999999876
No 467
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=27.56 E-value=23 Score=32.84 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=17.6
Q ss_pred HHHHhcCCC---eEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKS---GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n---~tI~aYGqTgSGKTyTm 208 (501)
++.++.|+- ..++-+|++|+|||+.+
T Consensus 21 ~~~li~g~~~~g~l~~i~g~~g~GKT~~~ 49 (193)
T PF13481_consen 21 LDWLIDGLLPRGELTLIAGPPGSGKTTLA 49 (193)
T ss_dssp --EEETTEE-TTSEEEEEECSTSSHHHHH
T ss_pred cceeECCcccCCeEEEEEeCCCCCHHHHH
Confidence 344444432 35788999999999987
No 468
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=27.45 E-value=37 Score=37.58 Aligned_cols=41 Identities=24% Similarity=0.226 Sum_probs=26.7
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcC-CCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKG-KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G-~n~tI~aYGqTgSGKTyTm 208 (501)
+||.|.+ |+.+-+ .+...+-.| ....++-||+.|+|||.+.
T Consensus 12 ~fdeiiG----qe~v~~----~L~~~I~~grl~hayLf~Gp~G~GKTt~A 53 (535)
T PRK08451 12 HFDELIG----QESVSK----TLSLALDNNRLAHAYLFSGLRGSGKTSSA 53 (535)
T ss_pred CHHHccC----cHHHHH----HHHHHHHcCCCCeeEEEECCCCCcHHHHH
Confidence 5888886 444432 233333345 3456789999999999876
No 469
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=27.44 E-value=29 Score=32.80 Aligned_cols=17 Identities=47% Similarity=0.694 Sum_probs=12.8
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
-+|+-.|+.|||||.-+
T Consensus 4 ~~vlL~Gps~SGKTaLf 20 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALF 20 (181)
T ss_dssp -EEEEE-STTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 46888999999999655
No 470
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=27.34 E-value=26 Score=42.69 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=16.4
Q ss_pred HhcCCCeEEEeccCCCCCccccc
Q 046715 186 FLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 186 ~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
++.+ |-.++..|+||||||.-+
T Consensus 85 ai~~-~~VviI~GeTGSGKTTql 106 (1294)
T PRK11131 85 AIRD-HQVVIVAGETGSGKTTQL 106 (1294)
T ss_pred HHHh-CCeEEEECCCCCCHHHHH
Confidence 3444 346788899999999855
No 471
>PRK05541 adenylylsulfate kinase; Provisional
Probab=27.28 E-value=28 Score=31.96 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=14.1
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+-.|..|||||...
T Consensus 8 ~~I~i~G~~GsGKst~a 24 (176)
T PRK05541 8 YVIWITGLAGSGKTTIA 24 (176)
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36778899999998765
No 472
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=27.14 E-value=18 Score=42.61 Aligned_cols=14 Identities=29% Similarity=0.247 Sum_probs=11.6
Q ss_pred cCCCCCcccccccC
Q 046715 198 GPSGSGKTHTIFGC 211 (501)
Q Consensus 198 GqTgSGKTyTm~G~ 211 (501)
=+||||||||+.+.
T Consensus 66 M~TGtGKT~~~~~~ 79 (986)
T PRK15483 66 METGTGKTYVYTRL 79 (986)
T ss_pred eCCCCCHHHHHHHH
Confidence 37999999988764
No 473
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=27.05 E-value=33 Score=39.48 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=27.2
Q ss_pred ccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccccc
Q 046715 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 161 FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G 210 (501)
+|.|++ |++..+ .+++-+..+....++-||++|+|||+...|
T Consensus 181 l~~~ig----r~~ei~----~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 181 IDPLIG----REDELE----RTIQVLCRRKKNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CCcccC----cHHHHH----HHHHHHhcCCCCceEEECCCCCCHHHHHHH
Confidence 566664 444443 355444444445678899999999998855
No 474
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=27.04 E-value=25 Score=32.88 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=13.0
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
+.-.|++|||||..+
T Consensus 24 ~~l~G~nG~GKSTLl 38 (176)
T cd03238 24 VVVTGVSGSGKSTLV 38 (176)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999988
No 475
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=27.02 E-value=26 Score=36.86 Aligned_cols=17 Identities=41% Similarity=0.409 Sum_probs=14.8
Q ss_pred EEEeccCCCCCcccccc
Q 046715 193 MLAALGPSGSGKTHTIF 209 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm~ 209 (501)
-++++|..|||||+++.
T Consensus 3 ~~i~~GgrgSGKS~~~~ 19 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIA 19 (396)
T ss_pred eEEEeCCCCcccHHHHH
Confidence 46899999999999884
No 476
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=27.01 E-value=24 Score=41.24 Aligned_cols=18 Identities=44% Similarity=0.558 Sum_probs=16.2
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
|.-.+..|+||||||+.|
T Consensus 438 n~N~~I~G~sGsGKS~l~ 455 (829)
T TIGR03783 438 NRNKFILGPSGSGKSFFT 455 (829)
T ss_pred cCceEEECCCCCCHHHHH
Confidence 667789999999999988
No 477
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=26.96 E-value=34 Score=39.29 Aligned_cols=57 Identities=23% Similarity=0.271 Sum_probs=35.2
Q ss_pred CCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccC--------------CCCCCCchhHHHHHHhhcc
Q 046715 168 DSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGC--------------PREPGMVPIALKRIFKGTT 230 (501)
Q Consensus 168 ~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~--------------~~~~GIipr~~~~LF~~~~ 230 (501)
+..|...++.+ ..++ |...+.+-+|.||||||-..+.- -.+-++.|++++.+-.+..
T Consensus 200 n~~Q~~a~~~i----~~~~--~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg 270 (730)
T COG1198 200 NQEQQAAVEAI----LSSL--GGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG 270 (730)
T ss_pred CHHHHHHHHHH----HHhc--ccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC
Confidence 44566565553 3333 44456678999999999655431 1355788887776655443
No 478
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=26.95 E-value=25 Score=33.10 Aligned_cols=15 Identities=33% Similarity=0.408 Sum_probs=10.7
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
.+-.|..||||||.+
T Consensus 3 ~~~~G~pGsGKS~~a 17 (193)
T PF05707_consen 3 YLITGKPGSGKSYYA 17 (193)
T ss_dssp EEEE--TTSSHHHHH
T ss_pred EEEEcCCCCcHhHHH
Confidence 456799999999876
No 479
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=26.89 E-value=25 Score=33.28 Aligned_cols=16 Identities=50% Similarity=0.931 Sum_probs=13.3
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-+|++|||||..+
T Consensus 24 ~~~i~G~nGsGKStll 39 (197)
T cd03278 24 LTAIVGPNGSGKSNII 39 (197)
T ss_pred cEEEECCCCCCHHHHH
Confidence 3457899999999887
No 480
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=26.87 E-value=26 Score=30.54 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=13.2
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
-|...|.+|+|||..+
T Consensus 3 ~i~l~G~~~~GKstli 18 (157)
T cd04164 3 KVVIVGKPNVGKSSLL 18 (157)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999766
No 481
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=26.79 E-value=25 Score=37.91 Aligned_cols=15 Identities=40% Similarity=0.585 Sum_probs=12.6
Q ss_pred EeccCCCCCcccccc
Q 046715 195 AALGPSGSGKTHTIF 209 (501)
Q Consensus 195 ~aYGqTgSGKTyTm~ 209 (501)
+.-|.||+|||-|+.
T Consensus 23 LIaGATGTGKTvTLq 37 (502)
T PF05872_consen 23 LIAGATGTGKTVTLQ 37 (502)
T ss_pred eeeccCCCCceehHH
Confidence 346999999999993
No 482
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=26.71 E-value=28 Score=39.48 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=14.8
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
.-++++|+||||||..+
T Consensus 225 ~H~Lv~ApTgsGKt~g~ 241 (641)
T PRK13822 225 THGLVFAGSGGFKTTSV 241 (641)
T ss_pred ceEEEEeCCCCCccceE
Confidence 45789999999999976
No 483
>PLN02796 D-glycerate 3-kinase
Probab=26.64 E-value=20 Score=37.37 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=12.4
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|-.-|.+|||||+.+
T Consensus 103 IGI~G~sGSGKSTLa 117 (347)
T PLN02796 103 IGISAPQGCGKTTLV 117 (347)
T ss_pred EEEECCCCCcHHHHH
Confidence 444599999999987
No 484
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.61 E-value=42 Score=37.63 Aligned_cols=41 Identities=32% Similarity=0.381 Sum_probs=27.9
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcC-CCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKG-KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G-~n~tI~aYGqTgSGKTyTm 208 (501)
.||.|.+ |+.+.+. |...+-.| ...+++-||+.|+|||.+.
T Consensus 11 ~f~eivG----q~~i~~~----L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A 52 (584)
T PRK14952 11 TFAEVVG----QEHVTEP----LSSALDAGRINHAYLFSGPRGCGKTSSA 52 (584)
T ss_pred cHHHhcC----cHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5888885 5555544 33333344 3556889999999999876
No 485
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=26.54 E-value=26 Score=33.65 Aligned_cols=16 Identities=38% Similarity=0.733 Sum_probs=13.2
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
-+|..|++|+|||.-|
T Consensus 30 f~fl~GpSGAGKSTll 45 (223)
T COG2884 30 FVFLTGPSGAGKSTLL 45 (223)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3577799999999866
No 486
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=26.51 E-value=29 Score=32.52 Aligned_cols=14 Identities=43% Similarity=0.470 Sum_probs=11.4
Q ss_pred EeccCCCCCccccc
Q 046715 195 AALGPSGSGKTHTI 208 (501)
Q Consensus 195 ~aYGqTgSGKTyTm 208 (501)
...|.+|||||..+
T Consensus 10 ~ivG~sgsGKTTLi 23 (173)
T PRK10751 10 AIAAWSGTGKTTLL 23 (173)
T ss_pred EEECCCCChHHHHH
Confidence 34499999999877
No 487
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=26.39 E-value=33 Score=31.30 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=15.7
Q ss_pred CCeEEEeccCCCCCccccc
Q 046715 190 KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 190 ~n~tI~aYGqTgSGKTyTm 208 (501)
++..|+-.|++|+|||.+.
T Consensus 13 ~g~gvLi~G~sG~GKStla 31 (149)
T cd01918 13 GGIGVLITGPSGIGKSELA 31 (149)
T ss_pred CCEEEEEEcCCCCCHHHHH
Confidence 4567889999999999665
No 488
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=26.28 E-value=36 Score=34.99 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=26.6
Q ss_pred ccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 161 FSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 161 FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
||.+++.+..-.++.+. +..+. ..+.-|+-+|.+||||++.-
T Consensus 5 ~~~liG~S~~~~~~~~~-----i~~~a-~~~~pVlI~GE~GtGK~~lA 46 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQ-----VSRLA-PLDKPVLIIGERGTGKELIA 46 (326)
T ss_pred cCccEECCHHHHHHHHH-----HHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 66666654433333333 23332 45677888999999999765
No 489
>PRK04182 cytidylate kinase; Provisional
Probab=26.27 E-value=30 Score=31.44 Aligned_cols=16 Identities=44% Similarity=0.783 Sum_probs=13.3
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|.+|||||...
T Consensus 2 ~I~i~G~~GsGKstia 17 (180)
T PRK04182 2 IITISGPPGSGKTTVA 17 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999855
No 490
>PLN02165 adenylate isopentenyltransferase
Probab=26.26 E-value=32 Score=35.66 Aligned_cols=17 Identities=29% Similarity=0.597 Sum_probs=14.3
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
-.|+-.|+||||||...
T Consensus 44 ~iivIiGPTGSGKStLA 60 (334)
T PLN02165 44 KVVVIMGATGSGKSRLS 60 (334)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 35777899999999876
No 491
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=26.24 E-value=29 Score=35.43 Aligned_cols=72 Identities=21% Similarity=0.281 Sum_probs=42.3
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHh---cCC--CeEEEeccCCCCCccccc--------------ccC---CCCCCC
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFL---KGK--SGMLAALGPSGSGKTHTI--------------FGC---PREPGM 217 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l---~G~--n~tI~aYGqTgSGKTyTm--------------~G~---~~~~GI 217 (501)
+|+.+=+-+..-++|-+.+--|+-+--+ -|. ---|+.||..|+|||..- .|+ ....|=
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGd 262 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD 262 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhcc
Confidence 4666655554444444444333322111 133 224789999999998543 222 134577
Q ss_pred chhHHHHHHhhccc
Q 046715 218 VPIALKRIFKGTTK 231 (501)
Q Consensus 218 ipr~~~~LF~~~~~ 231 (501)
=|+.+++||+...+
T Consensus 263 GpklvRqlF~vA~e 276 (440)
T KOG0726|consen 263 GPKLVRELFRVAEE 276 (440)
T ss_pred chHHHHHHHHHHHh
Confidence 79999999997766
No 492
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.09 E-value=20 Score=39.45 Aligned_cols=14 Identities=43% Similarity=0.712 Sum_probs=11.9
Q ss_pred eccCCCCCcccccc
Q 046715 196 ALGPSGSGKTHTIF 209 (501)
Q Consensus 196 aYGqTgSGKTyTm~ 209 (501)
-+|.||||||..++
T Consensus 2 L~g~TGsGKT~v~l 15 (505)
T TIGR00595 2 LFGVTGSGKTEVYL 15 (505)
T ss_pred ccCCCCCCHHHHHH
Confidence 58999999998764
No 493
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=26.04 E-value=33 Score=38.79 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=17.8
Q ss_pred CCCeEEEeccCCCCCccccc
Q 046715 189 GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 189 G~n~tI~aYGqTgSGKTyTm 208 (501)
+-|-.|+..|.||||||.-+
T Consensus 369 r~n~vvvivgETGSGKTTQl 388 (1042)
T KOG0924|consen 369 RENQVVVIVGETGSGKTTQL 388 (1042)
T ss_pred hhCcEEEEEecCCCCchhhh
Confidence 66889999999999999766
No 494
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=26.01 E-value=51 Score=36.72 Aligned_cols=41 Identities=29% Similarity=0.394 Sum_probs=25.6
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcC-CCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKG-KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G-~n~tI~aYGqTgSGKTyTm 208 (501)
+||.|.+ |+.+.+. +...+-.| ..-.++-||+.|+|||.+.
T Consensus 14 ~f~~viG----q~~v~~~----L~~~i~~~~~~hayLf~Gp~GtGKTt~A 55 (559)
T PRK05563 14 TFEDVVG----QEHITKT----LKNAIKQGKISHAYLFSGPRGTGKTSAA 55 (559)
T ss_pred cHHhccC----cHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5777775 5555443 22222234 3455667999999999765
No 495
>PRK09354 recA recombinase A; Provisional
Probab=25.92 E-value=48 Score=34.63 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=25.0
Q ss_pred hhhhhHHHHHhc--CC--CeEEEeccCCCCCccccc
Q 046715 177 KMVNPLVEDFLK--GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 177 ~~v~plv~~~l~--G~--n~tI~aYGqTgSGKTyTm 208 (501)
.++-+-+|.+|. |+ ...+..||+.|||||...
T Consensus 42 sTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLa 77 (349)
T PRK09354 42 STGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLA 77 (349)
T ss_pred cCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHH
Confidence 347778888887 44 456789999999999765
No 496
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=25.90 E-value=30 Score=32.09 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=11.9
Q ss_pred EEeccCCCCCcccc
Q 046715 194 LAALGPSGSGKTHT 207 (501)
Q Consensus 194 I~aYGqTgSGKTyT 207 (501)
++..|.+|||||.-
T Consensus 2 ~li~G~~~sGKS~~ 15 (169)
T cd00544 2 ILVTGGARSGKSRF 15 (169)
T ss_pred EEEECCCCCCHHHH
Confidence 57799999999954
No 497
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=25.89 E-value=39 Score=35.58 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=22.7
Q ss_pred hhhHHHHHhcC-C--CeEEEeccCCCCCcccccc
Q 046715 179 VNPLVEDFLKG-K--SGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 179 v~plv~~~l~G-~--n~tI~aYGqTgSGKTyTm~ 209 (501)
.-+-+|.++.| + ...++-+|.+|+|||..+.
T Consensus 67 Gi~eLD~vLgGGi~~GslvLI~G~pG~GKStLll 100 (372)
T cd01121 67 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLL 100 (372)
T ss_pred CCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHH
Confidence 34455677754 2 4678999999999998773
No 498
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=25.88 E-value=32 Score=33.50 Aligned_cols=18 Identities=17% Similarity=0.291 Sum_probs=15.4
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...+..+|++|+|||+..
T Consensus 24 g~~~~i~G~~G~GKTtl~ 41 (230)
T PRK08533 24 GSLILIEGDESTGKSILS 41 (230)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357889999999999874
No 499
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=25.86 E-value=35 Score=36.09 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=19.4
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|..+++|.++ ++.-+||||||-+.
T Consensus 91 aiP~~L~g~dv--IglAeTGSGKT~af 115 (476)
T KOG0330|consen 91 AIPVALGGRDV--IGLAETGSGKTGAF 115 (476)
T ss_pred hcchhhCCCcE--EEEeccCCCchhhh
Confidence 45567899886 55569999999776
No 500
>CHL00095 clpC Clp protease ATP binding subunit
Probab=25.84 E-value=55 Score=38.25 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=14.1
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
+.++-+|++|+|||++.
T Consensus 540 ~~~lf~Gp~GvGKt~lA 556 (821)
T CHL00095 540 ASFLFSGPTGVGKTELT 556 (821)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 45666999999999876
Done!