Query 046715
Match_columns 501
No_of_seqs 305 out of 2050
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 06:00:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046715.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046715hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vvg_A Kinesin-2; motor protei 100.0 2.1E-87 7.1E-92 687.8 23.7 333 75-444 2-345 (350)
2 3b6u_A Kinesin-like protein KI 100.0 4E-87 1.4E-91 689.7 21.6 339 72-451 16-370 (372)
3 3lre_A Kinesin-like protein KI 100.0 1.2E-86 4.2E-91 684.4 24.0 328 71-434 4-355 (355)
4 3bfn_A Kinesin-like protein KI 100.0 1.4E-86 4.9E-91 687.8 23.9 329 73-444 17-357 (388)
5 3cob_A Kinesin heavy chain-lik 100.0 1E-85 3.4E-90 679.2 26.8 335 74-456 2-351 (369)
6 1goj_A Kinesin, kinesin heavy 100.0 4.5E-86 1.5E-90 679.7 23.6 322 75-444 4-340 (355)
7 1x88_A Kinesin-like protein KI 100.0 2.4E-86 8.3E-91 683.1 20.2 328 73-442 4-358 (359)
8 2owm_A Nckin3-434, related to 100.0 7.5E-86 2.6E-90 695.0 23.9 339 73-448 34-428 (443)
9 2wbe_C Bipolar kinesin KRP-130 100.0 3E-86 1E-90 685.1 20.0 327 73-443 19-370 (373)
10 2y65_A Kinesin, kinesin heavy 100.0 9.3E-86 3.2E-90 679.1 21.4 317 75-443 9-342 (365)
11 1t5c_A CENP-E protein, centrom 100.0 7E-85 2.4E-89 669.4 25.4 319 76-444 3-338 (349)
12 2zfi_A Kinesin-like protein KI 100.0 4.4E-85 1.5E-89 675.4 22.9 326 76-442 3-362 (366)
13 1bg2_A Kinesin; motor protein, 100.0 5.3E-85 1.8E-89 664.8 20.6 308 75-434 5-325 (325)
14 1ry6_A Internal kinesin; kines 100.0 1.3E-84 4.4E-89 669.5 23.0 327 78-446 1-343 (360)
15 3nwn_A Kinesin-like protein KI 100.0 1.5E-84 5.2E-89 668.7 23.1 318 74-434 21-359 (359)
16 2h58_A Kinesin-like protein KI 100.0 6.8E-84 2.3E-88 657.9 27.3 313 75-435 2-329 (330)
17 2rep_A Kinesin-like protein KI 100.0 4.4E-84 1.5E-88 668.5 24.4 336 67-434 12-376 (376)
18 2heh_A KIF2C protein; kinesin, 100.0 2.5E-84 8.6E-89 670.8 21.8 319 76-437 50-385 (387)
19 3gbj_A KIF13B protein; kinesin 100.0 1.1E-83 3.9E-88 662.1 24.1 322 77-434 1-350 (354)
20 3t0q_A AGR253WP; kinesin, alph 100.0 1.9E-83 6.5E-88 659.7 25.4 316 75-437 3-347 (349)
21 1f9v_A Kinesin-like protein KA 100.0 4.1E-83 1.4E-87 656.3 26.0 272 156-438 51-345 (347)
22 1v8k_A Kinesin-like protein KI 100.0 1E-83 3.5E-88 670.1 20.8 320 76-438 70-406 (410)
23 4a14_A Kinesin, kinesin-like p 100.0 2.8E-83 9.6E-88 657.7 22.9 309 75-432 9-344 (344)
24 2nr8_A Kinesin-like protein KI 100.0 1.6E-82 5.6E-87 653.4 22.8 318 73-434 19-358 (358)
25 3dc4_A Kinesin-like protein NO 100.0 2.6E-82 8.9E-87 648.7 23.9 304 75-436 20-337 (344)
26 4etp_A Kinesin-like protein KA 100.0 5.4E-83 1.8E-87 667.5 17.2 325 66-438 48-401 (403)
27 3u06_A Protein claret segregat 100.0 1.1E-82 3.8E-87 665.2 16.8 328 65-438 47-386 (412)
28 4h1g_A Maltose binding protein 100.0 1.3E-75 4.6E-80 655.8 24.9 285 136-436 414-713 (715)
29 2o0a_A S.cerevisiae chromosome 99.9 7.4E-27 2.5E-31 227.4 6.8 222 157-437 57-292 (298)
30 2kin_B Kinesin; motor protein, 99.9 5E-27 1.7E-31 197.0 3.6 79 365-443 2-85 (100)
31 3kin_B Kinesin heavy chain; mo 99.9 1.8E-25 6E-30 193.7 8.0 76 368-443 1-81 (117)
32 3ec2_A DNA replication protein 95.2 0.0054 1.8E-07 55.5 1.5 49 159-208 7-55 (180)
33 2w58_A DNAI, primosome compone 94.1 0.021 7.1E-07 52.4 2.5 49 159-208 22-71 (202)
34 2qgz_A Helicase loader, putati 92.7 0.046 1.6E-06 54.4 2.6 50 159-209 121-170 (308)
35 1jbk_A CLPB protein; beta barr 88.6 0.19 6.6E-06 44.3 2.4 30 179-208 31-60 (195)
36 3bos_A Putative DNA replicatio 87.7 0.31 1.1E-05 45.0 3.3 45 159-208 25-69 (242)
37 2r62_A Cell division protease 87.6 0.25 8.5E-06 47.2 2.7 49 159-208 8-61 (268)
38 2p65_A Hypothetical protein PF 86.7 0.22 7.6E-06 43.9 1.6 41 160-208 20-60 (187)
39 3t15_A Ribulose bisphosphate c 86.6 0.24 8.2E-06 48.5 1.9 37 172-208 13-53 (293)
40 2bjv_A PSP operon transcriptio 86.1 0.24 8.2E-06 47.3 1.6 44 159-208 3-46 (265)
41 3cf0_A Transitional endoplasmi 85.8 0.32 1.1E-05 47.7 2.3 50 159-208 12-66 (301)
42 3h4m_A Proteasome-activating n 85.7 0.32 1.1E-05 46.8 2.3 50 159-208 14-68 (285)
43 3te6_A Regulatory protein SIR3 85.3 0.3 1E-05 48.8 1.9 22 187-208 41-62 (318)
44 2kjq_A DNAA-related protein; s 85.3 0.4 1.4E-05 42.1 2.5 17 192-208 37-53 (149)
45 1ixz_A ATP-dependent metallopr 85.3 0.33 1.1E-05 46.0 2.1 49 159-208 13-66 (254)
46 1d2n_A N-ethylmaleimide-sensit 84.8 0.45 1.5E-05 45.6 2.9 21 188-208 61-81 (272)
47 4etp_B Spindle POLE BODY-assoc 84.8 3.5 0.00012 40.7 9.1 204 157-416 92-310 (333)
48 1l8q_A Chromosomal replication 84.5 0.46 1.6E-05 46.8 2.8 47 159-208 8-54 (324)
49 1g8p_A Magnesium-chelatase 38 84.0 0.3 1E-05 48.3 1.2 43 158-208 20-62 (350)
50 3b9p_A CG5977-PA, isoform A; A 83.4 0.38 1.3E-05 46.6 1.7 50 159-208 18-71 (297)
51 2v1u_A Cell division control p 83.2 0.4 1.4E-05 47.7 1.8 39 169-208 22-61 (387)
52 3d8b_A Fidgetin-like protein 1 82.9 0.36 1.2E-05 48.6 1.3 50 159-208 81-134 (357)
53 1qde_A EIF4A, translation init 81.9 0.55 1.9E-05 43.2 2.1 23 183-207 45-67 (224)
54 1iy2_A ATP-dependent metallopr 81.6 0.59 2E-05 45.0 2.2 49 159-208 37-90 (278)
55 1vec_A ATP-dependent RNA helic 81.6 0.62 2.1E-05 42.2 2.3 24 183-208 34-57 (206)
56 2gxq_A Heat resistant RNA depe 81.5 0.56 1.9E-05 42.5 2.0 23 184-208 33-55 (207)
57 1xwi_A SKD1 protein; VPS4B, AA 81.4 0.49 1.7E-05 47.0 1.6 50 159-208 9-62 (322)
58 4gkp_A Spindle POLE BODY-assoc 80.5 6.5 0.00022 38.1 9.0 215 157-436 46-271 (275)
59 2chg_A Replication factor C sm 80.3 0.69 2.4E-05 41.6 2.1 21 188-208 35-55 (226)
60 4b4t_M 26S protease regulatory 80.3 0.72 2.5E-05 48.0 2.5 50 159-208 178-232 (434)
61 3t34_A Dynamin-related protein 79.8 11 0.00039 37.4 11.2 16 193-208 36-51 (360)
62 3bor_A Human initiation factor 79.5 0.47 1.6E-05 44.5 0.7 25 182-208 60-84 (237)
63 1lv7_A FTSH; alpha/beta domain 79.4 0.5 1.7E-05 44.8 0.9 49 159-208 9-62 (257)
64 1p9r_A General secretion pathw 79.2 0.78 2.7E-05 47.5 2.3 27 182-208 158-184 (418)
65 1sxj_C Activator 1 40 kDa subu 78.9 0.96 3.3E-05 44.9 2.8 41 160-208 23-63 (340)
66 2z4s_A Chromosomal replication 78.8 0.94 3.2E-05 47.1 2.8 47 158-208 101-147 (440)
67 1fnn_A CDC6P, cell division co 78.7 1.4 4.8E-05 43.9 4.0 38 170-208 21-61 (389)
68 3uk6_A RUVB-like 2; hexameric 78.7 0.84 2.9E-05 45.5 2.3 45 159-208 41-87 (368)
69 3dkp_A Probable ATP-dependent 78.7 0.81 2.8E-05 42.9 2.1 25 182-208 59-83 (245)
70 3syl_A Protein CBBX; photosynt 77.6 1.2 4E-05 43.2 2.9 20 189-208 65-84 (309)
71 2qz4_A Paraplegin; AAA+, SPG7, 77.6 1.5 5.3E-05 41.1 3.7 19 190-208 38-56 (262)
72 2pl3_A Probable ATP-dependent 77.3 0.91 3.1E-05 42.2 2.0 24 183-208 56-79 (236)
73 2c9o_A RUVB-like 1; hexameric 77.2 1 3.4E-05 47.0 2.5 45 159-208 34-80 (456)
74 3jvv_A Twitching mobility prot 77.0 0.91 3.1E-05 46.0 2.0 27 182-208 114-140 (356)
75 1t6n_A Probable ATP-dependent 76.7 0.97 3.3E-05 41.5 2.0 24 183-208 45-68 (220)
76 3vfd_A Spastin; ATPase, microt 75.9 0.83 2.8E-05 46.4 1.4 50 159-208 112-165 (389)
77 1sxj_D Activator 1 41 kDa subu 75.8 1.2 4E-05 43.9 2.4 41 160-208 35-75 (353)
78 3eie_A Vacuolar protein sortin 75.8 0.93 3.2E-05 44.7 1.7 50 159-208 15-68 (322)
79 3ly5_A ATP-dependent RNA helic 75.5 0.85 2.9E-05 43.6 1.2 25 182-208 84-108 (262)
80 3b6e_A Interferon-induced heli 75.4 0.59 2E-05 42.4 0.1 34 165-208 32-65 (216)
81 1wrb_A DJVLGB; RNA helicase, D 75.3 1.1 3.8E-05 42.2 2.0 24 183-208 54-77 (253)
82 3iuy_A Probable ATP-dependent 75.2 1.1 3.9E-05 41.3 2.0 24 183-208 51-74 (228)
83 2qp9_X Vacuolar protein sortin 75.0 1 3.6E-05 45.2 1.8 50 159-208 48-101 (355)
84 3eiq_A Eukaryotic initiation f 73.9 1.4 4.7E-05 44.3 2.4 25 182-208 70-94 (414)
85 2qby_A CDC6 homolog 1, cell di 73.7 1.2 4.3E-05 44.0 2.0 20 189-208 43-62 (386)
86 3ber_A Probable ATP-dependent 73.4 1.3 4.4E-05 41.9 2.0 24 183-208 74-97 (249)
87 2eyu_A Twitching motility prot 73.2 1.4 4.7E-05 42.5 2.1 19 190-208 24-42 (261)
88 1iqp_A RFCS; clamp loader, ext 73.2 1.8 6E-05 42.0 2.9 41 160-208 23-63 (327)
89 3llm_A ATP-dependent RNA helic 73.1 1.2 4.1E-05 41.7 1.6 26 181-208 68-93 (235)
90 2qby_B CDC6 homolog 3, cell di 73.0 1.6 5.5E-05 43.4 2.6 44 160-208 18-62 (384)
91 2oxc_A Probable ATP-dependent 72.8 1.5 5E-05 40.8 2.1 24 183-208 55-78 (230)
92 2zan_A Vacuolar protein sortin 72.7 1.1 3.7E-05 46.6 1.3 50 159-208 131-184 (444)
93 3fe2_A Probable ATP-dependent 72.5 1.3 4.4E-05 41.5 1.7 24 183-208 60-83 (242)
94 2x8a_A Nuclear valosin-contain 72.3 0.9 3.1E-05 44.0 0.5 50 159-208 7-61 (274)
95 3pvs_A Replication-associated 72.2 1.8 6.1E-05 45.2 2.8 44 160-208 24-67 (447)
96 3fmo_B ATP-dependent RNA helic 71.8 1.4 4.8E-05 43.1 1.8 27 182-208 122-148 (300)
97 3pfi_A Holliday junction ATP-d 71.5 1.8 6.2E-05 42.5 2.6 44 160-208 27-72 (338)
98 3co5_A Putative two-component 71.1 1.8 6.1E-05 37.2 2.1 27 181-208 18-44 (143)
99 1w5s_A Origin recognition comp 71.0 2.7 9.1E-05 42.2 3.8 25 184-208 40-69 (412)
100 1q0u_A Bstdead; DEAD protein, 70.9 0.99 3.4E-05 41.5 0.4 23 184-208 36-58 (219)
101 3hu3_A Transitional endoplasmi 70.8 1.8 6.3E-05 45.6 2.6 50 159-208 201-255 (489)
102 4b4t_K 26S protease regulatory 70.5 0.8 2.7E-05 47.6 -0.3 50 159-208 169-223 (428)
103 1gvn_B Zeta; postsegregational 70.0 3.1 0.00011 40.5 3.8 31 178-208 15-50 (287)
104 4b4t_L 26S protease subunit RP 69.9 1.2 4E-05 46.5 0.8 50 159-208 178-232 (437)
105 1njg_A DNA polymerase III subu 69.6 2 6.8E-05 38.9 2.2 18 191-208 45-62 (250)
106 1u0j_A DNA replication protein 69.5 2.1 7.2E-05 41.5 2.5 29 180-208 90-121 (267)
107 4b4t_J 26S protease regulatory 69.3 1.9 6.4E-05 44.5 2.1 50 159-208 145-199 (405)
108 1hqc_A RUVB; extended AAA-ATPa 68.9 2.4 8.2E-05 41.2 2.8 44 160-208 10-55 (324)
109 2j0s_A ATP-dependent RNA helic 68.4 1.9 6.5E-05 43.3 2.0 24 183-208 68-91 (410)
110 1tue_A Replication protein E1; 68.0 1.4 4.8E-05 41.3 0.8 27 183-209 48-76 (212)
111 4fcw_A Chaperone protein CLPB; 67.7 2.8 9.5E-05 40.4 3.0 38 170-208 21-64 (311)
112 3h1t_A Type I site-specific re 67.5 2.2 7.7E-05 45.6 2.4 29 180-209 188-216 (590)
113 3n70_A Transport activator; si 67.5 2.8 9.5E-05 36.0 2.6 20 189-208 22-41 (145)
114 1in4_A RUVB, holliday junction 67.4 2.8 9.5E-05 41.5 2.9 44 160-208 23-68 (334)
115 3fmp_B ATP-dependent RNA helic 67.0 2.1 7.1E-05 44.4 2.0 26 182-207 122-147 (479)
116 2ewv_A Twitching motility prot 66.4 1.9 6.5E-05 43.8 1.5 27 182-208 127-153 (372)
117 1s2m_A Putative ATP-dependent 66.3 1.9 6.6E-05 43.1 1.5 24 183-208 52-75 (400)
118 1ofh_A ATP-dependent HSL prote 65.9 2.3 7.8E-05 40.9 1.9 18 191-208 50-67 (310)
119 3pey_A ATP-dependent RNA helic 65.8 2.1 7.2E-05 42.4 1.7 26 183-208 36-61 (395)
120 3fht_A ATP-dependent RNA helic 65.8 2.2 7.5E-05 42.7 1.8 27 182-208 55-81 (412)
121 2z0m_A 337AA long hypothetical 65.8 2.3 8E-05 41.1 2.0 23 184-208 26-48 (337)
122 4b4t_I 26S protease regulatory 65.7 2.8 9.5E-05 43.6 2.5 50 159-208 179-233 (437)
123 3u61_B DNA polymerase accessor 65.2 3.8 0.00013 39.9 3.4 41 160-208 24-65 (324)
124 2fz4_A DNA repair protein RAD2 65.0 2.2 7.5E-05 40.2 1.5 23 185-209 104-126 (237)
125 2oap_1 GSPE-2, type II secreti 64.8 2.6 8.9E-05 44.7 2.2 19 188-208 259-277 (511)
126 3pxg_A Negative regulator of g 63.6 3.7 0.00013 42.9 3.1 42 160-209 178-219 (468)
127 4b4t_H 26S protease regulatory 63.4 2.5 8.6E-05 44.3 1.7 50 159-208 206-260 (467)
128 2i4i_A ATP-dependent RNA helic 63.0 2.8 9.5E-05 42.1 2.0 24 183-208 46-69 (417)
129 3cf2_A TER ATPase, transitiona 62.8 7.5 0.00026 43.5 5.6 73 159-231 201-295 (806)
130 1jr3_A DNA polymerase III subu 61.7 5.2 0.00018 39.5 3.7 41 160-208 14-55 (373)
131 3oiy_A Reverse gyrase helicase 61.5 3.1 0.00011 42.0 2.0 24 183-208 30-53 (414)
132 2r44_A Uncharacterized protein 60.9 2.3 7.9E-05 41.7 0.9 33 170-208 31-63 (331)
133 2chq_A Replication factor C sm 60.8 2.5 8.5E-05 40.7 1.1 41 160-208 15-55 (319)
134 2jlq_A Serine protease subunit 60.7 2.5 8.5E-05 43.9 1.1 25 182-207 11-35 (451)
135 1n0w_A DNA repair protein RAD5 59.8 3.4 0.00011 38.1 1.8 30 179-208 9-41 (243)
136 1xti_A Probable ATP-dependent 59.6 3.5 0.00012 40.9 2.0 25 182-208 38-62 (391)
137 2dhr_A FTSH; AAA+ protein, hex 59.3 2.6 9E-05 44.6 1.0 49 159-208 28-81 (499)
138 1rif_A DAR protein, DNA helica 59.1 2.5 8.4E-05 40.6 0.7 22 186-209 125-146 (282)
139 3c8u_A Fructokinase; YP_612366 58.9 4.6 0.00016 36.8 2.5 29 180-208 9-39 (208)
140 2db3_A ATP-dependent RNA helic 58.7 3.7 0.00012 42.2 2.0 24 183-208 87-110 (434)
141 1w36_D RECD, exodeoxyribonucle 58.7 4.2 0.00014 44.0 2.5 18 191-208 164-181 (608)
142 3fho_A ATP-dependent RNA helic 57.9 3.1 0.0001 43.8 1.2 25 184-208 151-175 (508)
143 2p5t_B PEZT; postsegregational 57.8 3.7 0.00013 38.8 1.7 36 173-208 13-49 (253)
144 3i5x_A ATP-dependent RNA helic 57.5 4.4 0.00015 42.8 2.4 26 182-207 102-127 (563)
145 1sxj_E Activator 1 40 kDa subu 57.4 2.8 9.6E-05 41.3 0.8 15 194-208 39-53 (354)
146 1fuu_A Yeast initiation factor 57.3 2.5 8.7E-05 41.9 0.4 24 183-208 52-75 (394)
147 2w0m_A SSO2452; RECA, SSPF, un 57.1 4.4 0.00015 36.8 2.1 28 181-208 10-40 (235)
148 2v1x_A ATP-dependent DNA helic 56.8 5.1 0.00017 43.2 2.8 24 183-208 53-76 (591)
149 4b3f_X DNA-binding protein smu 56.8 4.1 0.00014 44.3 2.1 26 183-209 198-223 (646)
150 4gp7_A Metallophosphoesterase; 56.7 2.9 9.9E-05 37.0 0.7 18 192-209 10-27 (171)
151 1rz3_A Hypothetical protein rb 56.4 5.4 0.00019 36.1 2.5 29 180-208 8-39 (201)
152 3b85_A Phosphate starvation-in 55.5 4.9 0.00017 37.1 2.1 25 182-208 15-39 (208)
153 1sxj_B Activator 1 37 kDa subu 55.5 4.4 0.00015 39.0 1.9 41 160-208 19-59 (323)
154 2ce7_A Cell division protein F 55.2 4.4 0.00015 42.6 1.9 45 159-208 13-66 (476)
155 1sxj_A Activator 1 95 kDa subu 54.9 4.9 0.00017 42.4 2.2 18 191-208 77-94 (516)
156 1ojl_A Transcriptional regulat 54.8 4.8 0.00016 39.4 2.0 20 189-208 23-42 (304)
157 4a2p_A RIG-I, retinoic acid in 54.6 4.8 0.00016 42.0 2.1 25 182-208 15-39 (556)
158 4a74_A DNA repair and recombin 54.3 5.2 0.00018 36.4 2.1 29 180-208 11-42 (231)
159 1hv8_A Putative ATP-dependent 54.2 4.5 0.00015 39.5 1.7 24 184-208 38-61 (367)
160 2cvh_A DNA repair and recombin 53.7 4.9 0.00017 36.3 1.8 30 179-208 5-37 (220)
161 1qvr_A CLPB protein; coiled co 53.3 3.5 0.00012 46.5 0.8 43 160-210 168-210 (854)
162 3b9q_A Chloroplast SRP recepto 53.2 6.4 0.00022 38.6 2.6 16 193-208 102-117 (302)
163 3tbk_A RIG-I helicase domain; 52.3 5.5 0.00019 41.4 2.1 24 183-208 13-36 (555)
164 3e70_C DPA, signal recognition 52.0 7.8 0.00027 38.5 3.1 17 192-208 130-146 (328)
165 3hws_A ATP-dependent CLP prote 52.0 4.8 0.00016 40.1 1.5 18 191-208 51-68 (363)
166 2qag_C Septin-7; cell cycle, c 52.0 4 0.00014 42.1 0.9 24 185-208 25-48 (418)
167 1ypw_A Transitional endoplasmi 51.9 5.5 0.00019 44.7 2.1 51 158-208 200-255 (806)
168 4gl2_A Interferon-induced heli 51.8 5.1 0.00017 43.5 1.8 24 183-208 16-39 (699)
169 3tau_A Guanylate kinase, GMP k 51.1 4.7 0.00016 36.8 1.2 17 192-208 9-25 (208)
170 3pxi_A Negative regulator of g 50.9 7.8 0.00027 42.9 3.1 37 171-208 496-538 (758)
171 2fwr_A DNA repair protein RAD2 50.8 5.4 0.00019 41.0 1.7 22 185-208 104-125 (472)
172 3upu_A ATP-dependent DNA helic 50.7 6.8 0.00023 40.6 2.5 36 168-208 27-62 (459)
173 1kgd_A CASK, peripheral plasma 50.6 4.2 0.00014 36.2 0.7 16 193-208 7-22 (180)
174 3tr0_A Guanylate kinase, GMP k 50.5 4.2 0.00014 36.5 0.7 16 193-208 9-24 (205)
175 3lw7_A Adenylate kinase relate 50.3 4.5 0.00015 34.7 0.9 16 193-208 3-18 (179)
176 3sqw_A ATP-dependent RNA helic 49.7 7 0.00024 41.6 2.4 26 182-207 51-76 (579)
177 2qnr_A Septin-2, protein NEDD5 49.4 4.2 0.00014 39.8 0.6 24 185-208 12-35 (301)
178 2dr3_A UPF0273 protein PH0284; 48.9 6 0.00021 36.4 1.5 28 181-208 10-40 (247)
179 1qvr_A CLPB protein; coiled co 48.8 8.7 0.0003 43.2 3.1 17 192-208 589-605 (854)
180 3sop_A Neuronal-specific septi 48.3 4.7 0.00016 38.9 0.7 19 190-208 1-19 (270)
181 1r6b_X CLPA protein; AAA+, N-t 48.3 9.6 0.00033 42.1 3.3 17 192-208 489-505 (758)
182 1um8_A ATP-dependent CLP prote 48.3 4.4 0.00015 40.6 0.5 18 191-208 72-89 (376)
183 3a00_A Guanylate kinase, GMP k 48.2 4.3 0.00015 36.3 0.4 15 194-208 4-18 (186)
184 1c4o_A DNA nucleotide excision 48.0 12 0.0004 40.9 3.9 45 159-209 2-46 (664)
185 2b8t_A Thymidine kinase; deoxy 47.8 4.4 0.00015 38.0 0.4 20 191-210 12-31 (223)
186 2gk6_A Regulator of nonsense t 47.5 6.7 0.00023 42.5 1.9 18 192-209 196-213 (624)
187 1odf_A YGR205W, hypothetical 3 47.4 7.6 0.00026 37.8 2.1 20 189-208 29-48 (290)
188 1lvg_A Guanylate kinase, GMP k 47.2 4.7 0.00016 36.6 0.5 16 193-208 6-21 (198)
189 2gza_A Type IV secretion syste 47.2 7.7 0.00026 38.9 2.2 20 187-208 173-192 (361)
190 4ag6_A VIRB4 ATPase, type IV s 47.2 4.5 0.00015 40.8 0.4 16 193-208 37-52 (392)
191 2orw_A Thymidine kinase; TMTK, 46.6 4.4 0.00015 36.6 0.2 18 193-210 5-22 (184)
192 2ykg_A Probable ATP-dependent 46.6 7.5 0.00026 42.1 2.1 23 184-208 23-45 (696)
193 2px0_A Flagellar biosynthesis 46.5 7.4 0.00025 38.0 1.8 17 192-208 106-122 (296)
194 1gm5_A RECG; helicase, replica 46.5 6.1 0.00021 44.2 1.3 25 184-208 382-406 (780)
195 1rj9_A FTSY, signal recognitio 46.4 6 0.0002 38.9 1.1 17 192-208 103-119 (304)
196 2og2_A Putative signal recogni 46.4 9.9 0.00034 38.3 2.8 17 192-208 158-174 (359)
197 1zp6_A Hypothetical protein AT 46.4 5 0.00017 35.5 0.6 17 192-208 10-26 (191)
198 1wp9_A ATP-dependent RNA helic 46.2 6.3 0.00022 39.7 1.3 23 184-209 19-41 (494)
199 1ye8_A Protein THEP1, hypothet 45.8 5.1 0.00017 36.0 0.5 15 194-208 3-17 (178)
200 1lkx_A Myosin IE heavy chain; 45.0 11 0.00036 41.6 2.9 21 188-208 91-111 (697)
201 1ly1_A Polynucleotide kinase; 45.0 6.2 0.00021 34.3 0.9 17 192-208 3-19 (181)
202 1qhx_A CPT, protein (chloramph 44.8 6.2 0.00021 34.4 0.9 17 192-208 4-20 (178)
203 1e9r_A Conjugal transfer prote 44.4 5.2 0.00018 40.9 0.3 18 191-208 53-70 (437)
204 2yhs_A FTSY, cell division pro 44.3 10 0.00035 40.0 2.6 16 193-208 295-310 (503)
205 2j41_A Guanylate kinase; GMP, 44.3 6 0.0002 35.4 0.7 16 193-208 8-23 (207)
206 1r6b_X CLPA protein; AAA+, N-t 44.0 9.6 0.00033 42.0 2.5 42 160-209 184-225 (758)
207 1znw_A Guanylate kinase, GMP k 44.0 6.1 0.00021 35.9 0.7 16 193-208 22-37 (207)
208 3trf_A Shikimate kinase, SK; a 43.5 6.7 0.00023 34.5 0.9 16 193-208 7-22 (185)
209 3lnc_A Guanylate kinase, GMP k 43.4 7.4 0.00025 35.9 1.2 16 193-208 29-44 (231)
210 2bdt_A BH3686; alpha-beta prot 43.4 6.4 0.00022 35.0 0.7 16 193-208 4-19 (189)
211 1xx6_A Thymidine kinase; NESG, 43.2 5.1 0.00018 36.6 0.1 18 193-210 10-27 (191)
212 1w9i_A Myosin II heavy chain; 43.2 12 0.0004 41.8 2.9 21 188-208 169-189 (770)
213 3pxi_A Negative regulator of g 42.9 12 0.0004 41.4 2.9 42 160-209 178-219 (758)
214 2ehv_A Hypothetical protein PH 42.4 6.6 0.00023 36.2 0.7 17 192-208 31-47 (251)
215 3lfu_A DNA helicase II; SF1 he 42.3 7.2 0.00025 41.9 1.1 21 189-209 20-40 (647)
216 3nbx_X ATPase RAVA; AAA+ ATPas 42.3 9.5 0.00032 40.3 2.0 25 182-208 34-58 (500)
217 1oyw_A RECQ helicase, ATP-depe 42.3 6 0.00021 41.8 0.4 24 183-208 34-57 (523)
218 1i84_S Smooth muscle myosin he 42.3 14 0.00047 43.3 3.5 21 188-208 166-186 (1184)
219 2v26_A Myosin VI; calmodulin-b 42.2 12 0.00042 41.7 2.9 21 188-208 137-157 (784)
220 3e1s_A Exodeoxyribonuclease V, 42.2 8.3 0.00028 41.4 1.5 19 191-209 204-222 (574)
221 3iij_A Coilin-interacting nucl 41.7 6.9 0.00024 34.4 0.7 17 192-208 12-28 (180)
222 4a4z_A Antiviral helicase SKI2 41.7 10 0.00034 43.6 2.2 23 183-207 48-70 (997)
223 3uie_A Adenylyl-sulfate kinase 41.6 9.6 0.00033 34.3 1.7 19 190-208 24-42 (200)
224 2qen_A Walker-type ATPase; unk 41.2 10 0.00036 36.6 2.0 17 192-208 32-48 (350)
225 2r8r_A Sensor protein; KDPD, P 41.2 6.7 0.00023 37.1 0.5 18 192-209 7-24 (228)
226 4a2q_A RIG-I, retinoic acid in 40.5 9.7 0.00033 42.4 1.8 24 183-208 257-280 (797)
227 1w7j_A Myosin VA; motor protei 40.3 14 0.00046 41.4 2.9 21 188-208 153-173 (795)
228 1z6g_A Guanylate kinase; struc 40.2 6.6 0.00023 36.2 0.3 15 194-208 26-40 (218)
229 4db1_A Myosin-7; S1DC, cardiac 40.2 14 0.00047 41.3 2.9 21 188-208 168-188 (783)
230 4a2w_A RIG-I, retinoic acid in 40.2 9.8 0.00034 43.3 1.8 24 183-208 257-280 (936)
231 1g8x_A Myosin II heavy chain f 40.1 13 0.00044 42.8 2.8 21 188-208 169-189 (1010)
232 2xzl_A ATP-dependent helicase 39.8 10 0.00035 42.4 1.9 18 192-209 376-393 (802)
233 1kk8_A Myosin heavy chain, str 39.7 13 0.00044 41.9 2.6 21 188-208 166-186 (837)
234 2oca_A DAR protein, ATP-depend 39.6 7.6 0.00026 40.4 0.7 34 166-209 113-146 (510)
235 3kta_A Chromosome segregation 39.4 7.8 0.00027 34.1 0.7 16 193-208 28-43 (182)
236 2pt7_A CAG-ALFA; ATPase, prote 39.4 6.5 0.00022 39.0 0.1 20 187-208 169-188 (330)
237 2ycu_A Non muscle myosin 2C, a 39.3 14 0.00047 42.4 2.9 21 188-208 143-163 (995)
238 1kag_A SKI, shikimate kinase I 38.9 7.5 0.00026 33.7 0.5 16 193-208 6-21 (173)
239 1moz_A ARL1, ADP-ribosylation 38.7 11 0.00037 32.6 1.5 27 182-208 8-35 (183)
240 2wjy_A Regulator of nonsense t 38.7 11 0.00038 42.2 1.9 18 192-209 372-389 (800)
241 2w6b_A RHO guanine nucleotide 38.6 61 0.0021 23.3 5.0 43 444-486 11-53 (56)
242 3vaa_A Shikimate kinase, SK; s 38.6 8.8 0.0003 34.5 0.9 16 193-208 27-42 (199)
243 3t5d_A Septin-7; GTP-binding p 38.5 8.3 0.00028 36.8 0.7 21 188-208 5-25 (274)
244 3kl4_A SRP54, signal recogniti 38.5 22 0.00075 36.8 4.0 17 192-208 98-114 (433)
245 2i3b_A HCR-ntpase, human cance 38.4 7.7 0.00026 35.2 0.4 16 193-208 3-18 (189)
246 2ze6_A Isopentenyl transferase 38.3 8.9 0.0003 36.3 0.9 16 193-208 3-18 (253)
247 1knq_A Gluconate kinase; ALFA/ 38.0 8.6 0.0003 33.5 0.7 17 192-208 9-25 (175)
248 2dfs_A Myosin-5A; myosin-V, in 37.9 15 0.00052 42.5 2.9 21 188-208 153-173 (1080)
249 1j8m_F SRP54, signal recogniti 37.8 26 0.0009 34.0 4.3 16 193-208 100-115 (297)
250 1kht_A Adenylate kinase; phosp 37.6 8.6 0.00029 33.7 0.6 17 192-208 4-20 (192)
251 3kb2_A SPBC2 prophage-derived 37.6 9.3 0.00032 32.8 0.9 16 193-208 3-18 (173)
252 3dm5_A SRP54, signal recogniti 37.3 23 0.00078 36.8 3.9 19 191-209 100-118 (443)
253 1f2t_A RAD50 ABC-ATPase; DNA d 36.9 10 0.00035 32.8 1.0 16 193-208 25-40 (149)
254 4anj_A Unconventional myosin-V 36.8 16 0.00056 42.1 2.9 21 188-208 141-161 (1052)
255 1uaa_A REP helicase, protein ( 36.7 11 0.00037 41.0 1.4 20 190-209 14-33 (673)
256 2qor_A Guanylate kinase; phosp 36.5 8.6 0.00029 34.7 0.5 16 193-208 14-29 (204)
257 2fna_A Conserved hypothetical 36.2 13 0.00045 35.9 1.8 17 192-208 31-47 (357)
258 2v6i_A RNA helicase; membrane, 36.1 12 0.00041 38.3 1.6 16 193-208 4-19 (431)
259 1gku_B Reverse gyrase, TOP-RG; 36.1 15 0.0005 42.5 2.4 22 183-206 65-86 (1054)
260 1w4r_A Thymidine kinase; type 35.9 11 0.00036 34.8 1.0 21 188-208 17-37 (195)
261 2va8_A SSO2462, SKI2-type heli 35.8 11 0.00038 41.2 1.3 31 169-208 33-63 (715)
262 1v5w_A DMC1, meiotic recombina 35.2 14 0.00049 36.6 1.9 30 179-208 107-139 (343)
263 2eyq_A TRCF, transcription-rep 35.1 18 0.00063 42.1 3.0 27 181-207 614-640 (1151)
264 1a5t_A Delta prime, HOLB; zinc 34.9 18 0.00062 35.5 2.6 34 171-208 7-41 (334)
265 1s96_A Guanylate kinase, GMP k 34.9 10 0.00035 35.2 0.7 16 193-208 18-33 (219)
266 2qag_A Septin-2, protein NEDD5 34.8 11 0.00037 37.9 0.9 24 185-208 31-54 (361)
267 1vma_A Cell division protein F 34.7 10 0.00035 37.2 0.7 17 192-208 105-121 (306)
268 2rhm_A Putative kinase; P-loop 34.6 11 0.00037 33.2 0.8 17 192-208 6-22 (193)
269 2bbw_A Adenylate kinase 4, AK4 34.6 10 0.00036 35.3 0.7 17 192-208 28-44 (246)
270 1yks_A Genome polyprotein [con 34.6 13 0.00046 38.1 1.6 21 186-208 5-25 (440)
271 3tif_A Uncharacterized ABC tra 34.5 11 0.00036 35.4 0.7 16 193-208 33-48 (235)
272 3asz_A Uridine kinase; cytidin 34.5 10 0.00035 34.2 0.6 16 193-208 8-23 (211)
273 1uf9_A TT1252 protein; P-loop, 34.3 13 0.00045 32.9 1.3 21 188-208 5-25 (203)
274 1htw_A HI0065; nucleotide-bind 34.2 11 0.00037 33.1 0.7 17 192-208 34-50 (158)
275 2z83_A Helicase/nucleoside tri 34.2 15 0.00051 38.0 1.9 16 193-208 23-38 (459)
276 2zj8_A DNA helicase, putative 33.9 8.9 0.00031 42.0 0.1 30 170-208 27-56 (720)
277 1y63_A LMAJ004144AAA protein; 33.8 11 0.00037 33.4 0.7 16 193-208 12-27 (184)
278 1svm_A Large T antigen; AAA+ f 33.7 17 0.00059 36.8 2.3 17 192-208 170-186 (377)
279 3cm0_A Adenylate kinase; ATP-b 33.7 12 0.0004 32.9 0.9 16 193-208 6-21 (186)
280 1tev_A UMP-CMP kinase; ploop, 33.5 12 0.00041 32.8 0.9 17 192-208 4-20 (196)
281 4eun_A Thermoresistant glucoki 33.4 11 0.00038 33.8 0.7 17 192-208 30-46 (200)
282 1pzn_A RAD51, DNA repair and r 33.3 16 0.00054 36.4 1.9 30 179-208 116-148 (349)
283 2iut_A DNA translocase FTSK; n 32.5 11 0.00037 40.5 0.5 17 192-208 215-231 (574)
284 1e6c_A Shikimate kinase; phosp 32.4 12 0.00041 32.3 0.7 16 193-208 4-19 (173)
285 2z43_A DNA repair and recombin 32.2 16 0.00055 35.8 1.6 30 179-208 92-124 (324)
286 2ga8_A Hypothetical 39.9 kDa p 32.1 27 0.00091 35.2 3.3 21 188-208 21-41 (359)
287 2d7d_A Uvrabc system protein B 32.0 31 0.001 37.6 4.0 47 159-210 5-51 (661)
288 2xgj_A ATP-dependent RNA helic 32.0 15 0.0005 42.3 1.5 32 167-208 87-118 (1010)
289 2vli_A Antibiotic resistance p 31.8 14 0.00049 32.1 1.1 17 192-208 6-22 (183)
290 2p6r_A Afuhel308 helicase; pro 31.7 9.9 0.00034 41.5 -0.0 31 168-208 27-57 (702)
291 2xau_A PRE-mRNA-splicing facto 31.6 13 0.00045 41.3 1.0 15 193-207 111-125 (773)
292 3l9o_A ATP-dependent RNA helic 31.4 15 0.0005 42.7 1.4 24 183-208 193-216 (1108)
293 3rc3_A ATP-dependent RNA helic 31.4 12 0.00042 41.0 0.7 21 186-208 152-172 (677)
294 1nks_A Adenylate kinase; therm 31.4 13 0.00044 32.5 0.7 16 193-208 3-18 (194)
295 1xjc_A MOBB protein homolog; s 31.3 13 0.00044 33.3 0.7 16 193-208 6-21 (169)
296 2r2a_A Uncharacterized protein 31.2 12 0.00041 34.3 0.5 16 193-208 7-22 (199)
297 3ney_A 55 kDa erythrocyte memb 31.1 13 0.00044 34.1 0.7 16 193-208 21-36 (197)
298 2i1q_A DNA repair and recombin 31.1 18 0.00062 35.2 1.8 30 179-208 83-115 (322)
299 3t61_A Gluconokinase; PSI-biol 31.1 13 0.00044 33.3 0.7 17 192-208 19-35 (202)
300 2qmh_A HPR kinase/phosphorylas 30.8 14 0.00048 34.2 0.9 22 187-208 30-51 (205)
301 2iyv_A Shikimate kinase, SK; t 30.7 13 0.00045 32.6 0.7 16 193-208 4-19 (184)
302 2yvu_A Probable adenylyl-sulfa 30.7 15 0.00053 32.3 1.1 18 191-208 13-30 (186)
303 1cr0_A DNA primase/helicase; R 30.5 15 0.00053 35.1 1.2 27 182-208 24-52 (296)
304 1via_A Shikimate kinase; struc 30.4 13 0.00046 32.3 0.6 16 193-208 6-21 (175)
305 1sq5_A Pantothenate kinase; P- 30.3 27 0.00092 33.9 2.9 18 191-208 80-97 (308)
306 2ius_A DNA translocase FTSK; n 30.2 13 0.00043 39.5 0.5 16 193-208 169-184 (512)
307 3crm_A TRNA delta(2)-isopenten 30.1 17 0.00059 36.0 1.4 17 192-208 6-22 (323)
308 2bwj_A Adenylate kinase 5; pho 30.1 14 0.00048 32.6 0.8 16 193-208 14-29 (199)
309 2zr9_A Protein RECA, recombina 30.0 18 0.00062 36.1 1.6 30 179-208 45-78 (349)
310 4ddu_A Reverse gyrase; topoiso 30.0 20 0.0007 41.5 2.3 24 182-207 86-109 (1104)
311 3m6a_A ATP-dependent protease 29.8 14 0.00046 39.4 0.7 18 191-208 108-125 (543)
312 3aez_A Pantothenate kinase; tr 29.7 21 0.00071 35.0 2.0 17 192-208 91-107 (312)
313 2pt5_A Shikimate kinase, SK; a 29.4 15 0.00053 31.5 0.9 16 193-208 2-17 (168)
314 1ukz_A Uridylate kinase; trans 28.9 16 0.00055 32.6 0.9 17 192-208 16-32 (203)
315 2pcj_A ABC transporter, lipopr 28.8 14 0.00048 34.2 0.6 15 194-208 33-47 (224)
316 2v9p_A Replication protein E1; 28.7 15 0.0005 36.2 0.7 17 192-208 127-143 (305)
317 1zd8_A GTP:AMP phosphotransfer 28.7 14 0.00049 33.8 0.5 16 193-208 9-24 (227)
318 3a8t_A Adenylate isopentenyltr 28.7 17 0.00057 36.4 1.1 17 192-208 41-57 (339)
319 2ce2_X GTPase HRAS; signaling 28.6 14 0.00047 31.0 0.4 16 193-208 5-20 (166)
320 3fb4_A Adenylate kinase; psych 28.6 15 0.00052 33.1 0.7 15 194-208 3-17 (216)
321 3k1j_A LON protease, ATP-depen 28.4 21 0.00071 38.4 1.9 39 160-208 39-77 (604)
322 3o8b_A HCV NS3 protease/helica 28.4 21 0.00071 39.1 1.8 17 193-209 234-250 (666)
323 2ged_A SR-beta, signal recogni 28.3 14 0.00049 32.3 0.5 19 190-208 47-65 (193)
324 3tqc_A Pantothenate kinase; bi 28.3 27 0.00094 34.4 2.6 16 193-208 94-109 (321)
325 3a4m_A L-seryl-tRNA(SEC) kinas 28.3 16 0.00056 34.4 0.9 17 192-208 5-21 (260)
326 2c95_A Adenylate kinase 1; tra 28.3 16 0.00054 32.2 0.8 17 192-208 10-26 (196)
327 2onk_A Molybdate/tungstate ABC 28.2 16 0.00053 34.5 0.7 16 193-208 26-41 (240)
328 1jjv_A Dephospho-COA kinase; P 28.0 16 0.00054 32.8 0.7 16 193-208 4-19 (206)
329 1qf9_A UMP/CMP kinase, protein 28.0 16 0.00056 31.9 0.8 16 193-208 8-23 (194)
330 1ex7_A Guanylate kinase; subst 28.0 15 0.0005 33.4 0.5 15 194-208 4-18 (186)
331 1aky_A Adenylate kinase; ATP:A 27.9 16 0.00054 33.3 0.7 16 193-208 6-21 (220)
332 2gno_A DNA polymerase III, gam 27.9 22 0.00076 34.7 1.8 27 182-208 9-35 (305)
333 3qks_A DNA double-strand break 27.8 18 0.0006 32.9 1.0 16 193-208 25-40 (203)
334 1m3w_A H10H24; four-helix bund 27.7 88 0.003 19.2 3.7 23 479-501 9-31 (32)
335 2cbz_A Multidrug resistance-as 27.7 16 0.00055 34.2 0.7 16 193-208 33-48 (237)
336 1zu4_A FTSY; GTPase, signal re 27.4 16 0.00056 36.0 0.7 16 193-208 107-122 (320)
337 1g6h_A High-affinity branched- 27.2 17 0.00057 34.5 0.7 16 193-208 35-50 (257)
338 3sr0_A Adenylate kinase; phosp 27.2 17 0.00056 33.5 0.7 34 194-227 3-36 (206)
339 2zts_A Putative uncharacterize 27.0 17 0.00057 33.3 0.7 27 182-208 18-47 (251)
340 3dl0_A Adenylate kinase; phosp 27.0 17 0.00057 32.9 0.7 15 194-208 3-17 (216)
341 1ji0_A ABC transporter; ATP bi 27.0 17 0.00058 34.1 0.7 16 193-208 34-49 (240)
342 2cdn_A Adenylate kinase; phosp 26.9 21 0.00072 31.8 1.3 20 189-208 18-37 (201)
343 3foz_A TRNA delta(2)-isopenten 26.8 19 0.00064 35.7 1.0 17 192-208 11-27 (316)
344 3gfo_A Cobalt import ATP-bindi 26.7 17 0.00058 35.0 0.7 15 194-208 37-51 (275)
345 2dyk_A GTP-binding protein; GT 26.7 16 0.00055 30.6 0.5 16 193-208 3-18 (161)
346 1b0u_A Histidine permease; ABC 26.6 17 0.00059 34.6 0.7 15 194-208 35-49 (262)
347 1np6_A Molybdopterin-guanine d 26.6 17 0.00059 32.4 0.7 16 193-208 8-23 (174)
348 1c9k_A COBU, adenosylcobinamid 26.5 17 0.00059 32.8 0.7 13 194-206 2-14 (180)
349 2yz2_A Putative ABC transporte 26.4 18 0.0006 34.6 0.7 16 193-208 35-50 (266)
350 3hr8_A Protein RECA; alpha and 26.4 21 0.00072 35.9 1.4 31 178-208 44-78 (356)
351 1pjr_A PCRA; DNA repair, DNA r 26.3 18 0.0006 39.9 0.8 21 190-210 23-43 (724)
352 3umf_A Adenylate kinase; rossm 26.3 17 0.00059 33.8 0.6 35 193-227 31-65 (217)
353 2ff7_A Alpha-hemolysin translo 26.2 18 0.00061 34.2 0.7 16 193-208 37-52 (247)
354 2jaq_A Deoxyguanosine kinase; 26.2 17 0.0006 32.0 0.6 16 193-208 2-17 (205)
355 2ghi_A Transport protein; mult 26.1 18 0.00061 34.4 0.7 16 193-208 48-63 (260)
356 1ak2_A Adenylate kinase isoenz 26.1 18 0.0006 33.4 0.7 17 192-208 17-33 (233)
357 1mv5_A LMRA, multidrug resista 26.0 18 0.00061 33.9 0.7 16 193-208 30-45 (243)
358 1sgw_A Putative ABC transporte 25.9 17 0.00057 33.7 0.5 14 195-208 39-52 (214)
359 2if2_A Dephospho-COA kinase; a 25.9 17 0.00059 32.4 0.5 16 193-208 3-18 (204)
360 3fvq_A Fe(3+) IONS import ATP- 25.9 17 0.00059 36.6 0.6 16 193-208 32-47 (359)
361 3qf7_A RAD50; ABC-ATPase, ATPa 25.8 20 0.00067 36.0 1.0 16 193-208 25-40 (365)
362 2yyz_A Sugar ABC transporter, 25.7 18 0.00062 36.4 0.7 16 193-208 31-46 (359)
363 1g41_A Heat shock protein HSLU 25.6 17 0.0006 37.6 0.6 17 192-208 51-67 (444)
364 2pbr_A DTMP kinase, thymidylat 25.5 18 0.00063 31.6 0.7 16 193-208 2-17 (195)
365 2whx_A Serine protease/ntpase/ 25.4 24 0.00081 38.2 1.6 24 183-208 180-203 (618)
366 3exa_A TRNA delta(2)-isopenten 25.4 21 0.0007 35.5 1.0 16 193-208 5-20 (322)
367 2olj_A Amino acid ABC transpor 25.3 19 0.00064 34.5 0.7 16 193-208 52-67 (263)
368 1nlf_A Regulatory protein REPA 25.3 18 0.00062 34.3 0.6 17 192-208 31-47 (279)
369 3rlf_A Maltose/maltodextrin im 25.2 19 0.00064 36.6 0.7 16 193-208 31-46 (381)
370 1z47_A CYSA, putative ABC-tran 25.1 19 0.00065 36.2 0.7 16 193-208 43-58 (355)
371 1zak_A Adenylate kinase; ATP:A 25.0 18 0.00062 32.9 0.6 16 193-208 7-22 (222)
372 1z2a_A RAS-related protein RAB 25.0 18 0.00062 30.4 0.5 17 192-208 6-22 (168)
373 4g1u_C Hemin import ATP-bindin 25.0 19 0.00065 34.4 0.7 15 194-208 40-54 (266)
374 2pze_A Cystic fibrosis transme 24.9 19 0.00066 33.4 0.7 15 194-208 37-51 (229)
375 1cke_A CK, MSSA, protein (cyti 24.9 21 0.00071 32.4 0.9 16 193-208 7-22 (227)
376 1zj6_A ADP-ribosylation factor 24.8 33 0.0011 29.7 2.3 23 186-208 11-33 (187)
377 2plr_A DTMP kinase, probable t 24.8 19 0.00066 31.9 0.7 17 192-208 5-21 (213)
378 1g29_1 MALK, maltose transport 24.8 19 0.00066 36.3 0.7 16 193-208 31-46 (372)
379 2it1_A 362AA long hypothetical 24.7 19 0.00066 36.2 0.7 16 193-208 31-46 (362)
380 2b6h_A ADP-ribosylation factor 24.7 18 0.00061 32.0 0.4 25 184-208 22-46 (192)
381 1vpl_A ABC transporter, ATP-bi 24.7 20 0.00067 34.1 0.7 16 193-208 43-58 (256)
382 1f6b_A SAR1; gtpases, N-termin 24.6 27 0.00091 31.0 1.6 28 181-208 14-42 (198)
383 2qt1_A Nicotinamide riboside k 24.5 19 0.00066 32.2 0.6 16 193-208 23-38 (207)
384 2v3c_C SRP54, signal recogniti 24.4 24 0.0008 36.4 1.3 17 193-209 101-117 (432)
385 2ixe_A Antigen peptide transpo 24.3 20 0.00069 34.3 0.7 16 193-208 47-62 (271)
386 1zuh_A Shikimate kinase; alpha 24.2 20 0.0007 30.8 0.7 16 193-208 9-24 (168)
387 4a15_A XPD helicase, ATP-depen 24.1 28 0.00095 37.6 1.9 38 165-208 2-39 (620)
388 2pez_A Bifunctional 3'-phospho 24.1 23 0.00078 30.9 1.0 16 193-208 7-22 (179)
389 2nq2_C Hypothetical ABC transp 24.0 20 0.00069 33.9 0.7 15 194-208 34-48 (253)
390 2d2e_A SUFC protein; ABC-ATPas 24.0 21 0.00071 33.7 0.7 16 193-208 31-46 (250)
391 2zu0_C Probable ATP-dependent 24.0 21 0.0007 34.2 0.7 16 193-208 48-63 (267)
392 2ihy_A ABC transporter, ATP-bi 23.9 21 0.00071 34.5 0.7 15 194-208 50-64 (279)
393 2jeo_A Uridine-cytidine kinase 23.9 21 0.00072 33.2 0.7 16 193-208 27-42 (245)
394 1v43_A Sugar-binding transport 23.8 21 0.0007 36.1 0.7 16 193-208 39-54 (372)
395 2qi9_C Vitamin B12 import ATP- 23.8 21 0.00072 33.8 0.7 16 193-208 28-43 (249)
396 1nrj_B SR-beta, signal recogni 23.6 25 0.00084 31.5 1.1 21 188-208 9-29 (218)
397 1e4v_A Adenylate kinase; trans 23.6 20 0.00069 32.4 0.6 15 194-208 3-17 (214)
398 2w00_A HSDR, R.ECOR124I; ATP-b 23.5 18 0.00061 41.8 0.2 16 194-209 303-318 (1038)
399 2pjz_A Hypothetical protein ST 23.2 22 0.00074 34.0 0.7 16 193-208 32-47 (263)
400 1tf7_A KAIC; homohexamer, hexa 23.2 27 0.00092 36.7 1.5 28 181-208 26-56 (525)
401 1ksh_A ARF-like protein 2; sma 23.1 26 0.00088 30.3 1.2 20 189-208 16-35 (186)
402 3lda_A DNA repair protein RAD5 23.0 29 0.00099 35.4 1.6 30 179-208 163-195 (400)
403 1m7g_A Adenylylsulfate kinase; 23.0 22 0.00077 32.1 0.7 17 192-208 26-42 (211)
404 2f1r_A Molybdopterin-guanine d 23.0 11 0.00039 33.5 -1.3 16 193-208 4-19 (171)
405 2z0h_A DTMP kinase, thymidylat 22.9 22 0.00076 31.2 0.7 15 194-208 3-17 (197)
406 1ypw_A Transitional endoplasmi 22.9 13 0.00045 41.5 -1.1 50 159-208 474-528 (806)
407 3auy_A DNA double-strand break 22.8 26 0.00088 35.0 1.2 17 192-208 26-42 (371)
408 3d3q_A TRNA delta(2)-isopenten 22.8 24 0.00081 35.3 0.9 16 193-208 9-24 (340)
409 3p32_A Probable GTPase RV1496/ 22.7 46 0.0016 33.0 3.0 30 179-208 65-96 (355)
410 2vhj_A Ntpase P4, P4; non- hyd 22.6 27 0.00091 34.8 1.2 17 192-208 124-140 (331)
411 1ky3_A GTP-binding protein YPT 22.6 21 0.00073 30.4 0.5 18 191-208 8-25 (182)
412 1tq4_A IIGP1, interferon-induc 22.5 21 0.0007 36.7 0.4 16 193-208 71-86 (413)
413 1ltq_A Polynucleotide kinase; 22.4 24 0.00083 33.6 0.9 17 192-208 3-19 (301)
414 2f9l_A RAB11B, member RAS onco 22.4 22 0.00074 31.5 0.5 17 192-208 6-22 (199)
415 3be4_A Adenylate kinase; malar 22.4 22 0.00075 32.3 0.5 16 193-208 7-22 (217)
416 3tlx_A Adenylate kinase 2; str 22.3 23 0.00079 33.0 0.7 19 190-208 28-46 (243)
417 1u8z_A RAS-related protein RAL 22.2 22 0.00076 29.7 0.5 16 193-208 6-21 (168)
418 1ek0_A Protein (GTP-binding pr 22.1 22 0.00076 29.8 0.5 16 193-208 5-20 (170)
419 1z0j_A RAB-22, RAS-related pro 21.9 23 0.00077 29.9 0.5 17 192-208 7-23 (170)
420 1pui_A ENGB, probable GTP-bind 21.8 23 0.0008 31.4 0.6 17 192-208 27-43 (210)
421 2erx_A GTP-binding protein DI- 21.6 23 0.00078 29.8 0.5 17 192-208 4-20 (172)
422 1vht_A Dephospho-COA kinase; s 21.6 26 0.00089 31.6 0.9 17 192-208 5-21 (218)
423 1svi_A GTP-binding protein YSX 21.6 22 0.00074 31.0 0.3 17 192-208 24-40 (195)
424 3qkt_A DNA double-strand break 21.5 28 0.00095 34.3 1.1 16 193-208 25-40 (339)
425 1g16_A RAS-related protein SEC 21.4 23 0.00077 29.9 0.4 16 193-208 5-20 (170)
426 1e69_A Chromosome segregation 21.3 31 0.0011 33.6 1.4 16 193-208 26-41 (322)
427 2xb4_A Adenylate kinase; ATP-b 21.3 25 0.00084 32.2 0.6 15 194-208 3-17 (223)
428 2o5v_A DNA replication and rep 21.2 27 0.00094 35.0 1.0 16 193-208 28-43 (359)
429 1u94_A RECA protein, recombina 21.2 35 0.0012 34.2 1.8 30 179-208 47-80 (356)
430 2wwf_A Thymidilate kinase, put 21.1 26 0.0009 31.2 0.8 17 192-208 11-27 (212)
431 3d31_A Sulfate/molybdate ABC t 21.1 17 0.0006 36.3 -0.5 16 193-208 28-43 (348)
432 3ljm_A Coil Ser L9C; de novo d 21.1 89 0.003 19.0 2.8 18 483-500 9-26 (31)
433 1r2q_A RAS-related protein RAB 21.0 24 0.00083 29.6 0.5 17 192-208 7-23 (170)
434 4e22_A Cytidylate kinase; P-lo 20.9 26 0.00088 32.9 0.7 17 192-208 28-44 (252)
435 2grj_A Dephospho-COA kinase; T 20.9 29 0.001 31.3 1.1 18 191-208 12-29 (192)
436 3pqc_A Probable GTP-binding pr 20.9 23 0.00078 30.7 0.3 17 192-208 24-40 (195)
437 1wms_A RAB-9, RAB9, RAS-relate 20.9 24 0.00083 30.0 0.5 17 192-208 8-24 (177)
438 2lkc_A Translation initiation 20.8 24 0.00083 30.1 0.4 18 191-208 8-25 (178)
439 3u4q_A ATP-dependent helicase/ 20.7 26 0.00089 41.1 0.8 19 191-209 23-41 (1232)
440 2wsm_A Hydrogenase expression/ 20.7 35 0.0012 30.5 1.6 18 191-208 30-47 (221)
441 1kao_A RAP2A; GTP-binding prot 20.5 25 0.00086 29.3 0.5 17 192-208 4-20 (167)
442 3con_A GTPase NRAS; structural 20.4 25 0.00087 30.5 0.5 17 192-208 22-38 (190)
443 1z08_A RAS-related protein RAB 20.4 25 0.00086 29.6 0.5 17 192-208 7-23 (170)
444 2v54_A DTMP kinase, thymidylat 20.3 27 0.00092 30.9 0.7 16 193-208 6-21 (204)
445 2xtp_A GTPase IMAP family memb 20.3 24 0.00082 32.9 0.3 18 191-208 22-39 (260)
446 3gd7_A Fusion complex of cysti 20.2 26 0.00089 35.6 0.6 15 194-208 50-64 (390)
447 2bbs_A Cystic fibrosis transme 20.2 26 0.0009 33.9 0.6 15 194-208 67-81 (290)
448 1c1y_A RAS-related protein RAP 20.1 26 0.00089 29.3 0.5 16 193-208 5-20 (167)
No 1
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=2.1e-87 Score=687.84 Aligned_cols=333 Identities=26% Similarity=0.412 Sum_probs=264.0
Q ss_pred CCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcC-CceEEecCCcccccc-cc
Q 046715 75 PSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVND-HNSVTLSPPLALQTS-KR 152 (501)
Q Consensus 75 ~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~v~l~~p~~~~~~-~~ 152 (501)
.+++|+||||+||+...| ...+...|+.+++ ..+|.+.+|...... ..
T Consensus 2 ~~~~i~V~vRvRP~~~~E------------------------------~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~ 51 (350)
T 2vvg_A 2 SSDNIKVIVRCRPLNARE------------------------------TRENALNIIRMDEASAQVIVDPPEQEKSATQA 51 (350)
T ss_dssp --CBCEEEEEECCCCHHH------------------------------HHTTCCBCEEEEGGGTEEEECC----------
T ss_pred CCCCeEEEEEeCCCChhh------------------------------hccCCceEEEEcCCCCEEEEeecccccccccc
Confidence 358999999999998766 2345566777764 668888876542211 11
Q ss_pred ccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcccc
Q 046715 153 IKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKI 232 (501)
Q Consensus 153 ~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~ 232 (501)
....+.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|+.+++|||||++++||+.+..
T Consensus 52 ~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~- 130 (350)
T 2vvg_A 52 KKVPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINS- 130 (350)
T ss_dssp ----EEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHT-
T ss_pred CCCceEeeCCEEECCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHh-
Confidence 2235679999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred cCCCccceEEEEEEEEeeccCCCcceeccCCCCcccccc-----cccccCceEEEecCHHHHHHHHHHhhccccccccCC
Q 046715 233 RSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLCMQ-----QSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNS 307 (501)
Q Consensus 233 ~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~~~~~-----~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~ 307 (501)
...+..|.|++||+||||| +|+|||.+...+.++ +.+|.|++++.|.+++|++.+|..|.++|++++|.+
T Consensus 131 ~~~~~~~~v~vS~~EIYnE-----~i~DLL~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~ 205 (350)
T 2vvg_A 131 SSSNQNFLVIGSYLELYNE-----EIRDLIKNNTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQM 205 (350)
T ss_dssp CCTTEEEEEEEEEEEEETT-----EEEETTTTEEEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC-------
T ss_pred hccCCcEEEEEEEEEEeCC-----EEEEcccCCcCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccC
Confidence 3556789999999999998 999999876666554 468999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc----CCCC
Q 046715 308 NNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR----KPLQ 383 (501)
Q Consensus 308 n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~----~~~~ 383 (501)
|..|||||+||+|+|.+.....+. .....|+|+|||||||||..++++.|.+++|+..||+||++||+||. +..|
T Consensus 206 N~~SSRSH~if~i~v~~~~~~~~~-~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~h 284 (350)
T 2vvg_A 206 NDTSSRSHSIFMVRIECSEVIENK-EVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATH 284 (350)
T ss_dssp ---CTTCEEEEEEEEEEEEC-----CEEEEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCcceEEEEEEEEEeeccCCC-ccEEEEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999887644322 23456999999999999999999999999999999999999999997 6689
Q ss_pred cccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCchh
Q 046715 384 KHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDSSN 444 (501)
Q Consensus 384 vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~~~ 444 (501)
|||||||||+||||+|||||+|+||+||||+..+++||++||+||+||++|+|++++|++.
T Consensus 285 vPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~ 345 (350)
T 2vvg_A 285 IPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDP 345 (350)
T ss_dssp CCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSC
T ss_pred CCccccHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhccccceecCCc
Confidence 9999999999999999999999999999999999999999999999999999999988653
No 2
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=4e-87 Score=689.70 Aligned_cols=339 Identities=27% Similarity=0.379 Sum_probs=275.6
Q ss_pred CCCCCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcC-CceEEecCCcccccc
Q 046715 72 TSSPSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVND-HNSVTLSPPLALQTS 150 (501)
Q Consensus 72 ~~~~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~v~l~~p~~~~~~ 150 (501)
.+..+++|+||||+||+...| ...+...|+.++. ..+|.+.+|....
T Consensus 16 ~~~~~~~irV~vRvRP~~~~E------------------------------~~~~~~~~v~~~~~~~~v~v~~~~~~~-- 63 (372)
T 3b6u_A 16 FQGSSESVRVVVRCRPMNGKE------------------------------KAASYDKVVDVDVKLGQVSVKNPKGTA-- 63 (372)
T ss_dssp -----CBCEEEEEECCCCHHH------------------------------HHTTCCBCEEEETTTTEEEECCTTCTT--
T ss_pred cCCCCCCeEEEEEcCCCChhh------------------------------hccCCceEEEEeCCCCEEEEECCCCCC--
Confidence 344679999999999998766 2344556676654 6788888775421
Q ss_pred ccccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCC---CCCCCchhHHHHHHh
Q 046715 151 KRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCP---REPGMVPIALKRIFK 227 (501)
Q Consensus 151 ~~~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~---~~~GIipr~~~~LF~ 227 (501)
....+.|.||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|.. +++|||||++++||+
T Consensus 64 --~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~ 141 (372)
T 3b6u_A 64 --HEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFT 141 (372)
T ss_dssp --TCCCEEEECSEEECTTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHH
T ss_pred --CCCceEEEcCeEeCCcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHH
Confidence 122457999999999999999999999999999999999999999999999999999975 456999999999999
Q ss_pred hcccccCCCccceEEEEEEEEeeccCCCcceeccCCCCc--cccc-----ccccccCceEEEecCHHHHHHHHHHhhccc
Q 046715 228 GTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV--DLCM-----QQSTIKGLQEIIISDAAQAESLIARAMLKR 300 (501)
Q Consensus 228 ~~~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~--~~~~-----~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R 300 (501)
.+.. ..+..|.|++||+||||| +|+|||.+.. .+.+ .+.+|.|++++.|.+++|++.+|..|.++|
T Consensus 142 ~i~~--~~~~~~~v~vS~~EIYnE-----~i~DLL~~~~~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R 214 (372)
T 3b6u_A 142 HISR--SQNQQYLVRASYLEIYQE-----EIRDLLSKDQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNR 214 (372)
T ss_dssp HHHT--CSSCEEEEEEEEEEEETT-----EEEETTSSCTTCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHH
T ss_pred Hhhh--ccCCceEEEEEEEEEeCC-----EEEECCCCCCCCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhc
Confidence 9987 566789999999999998 9999997643 3444 356899999999999999999999999999
Q ss_pred cccccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc-
Q 046715 301 ATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR- 379 (501)
Q Consensus 301 ~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~- 379 (501)
++++|.+|..|||||+||+|+|.+......+......|+|+|||||||||..++++.|.+++|+..||+||++||+||.
T Consensus 215 ~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~a 294 (372)
T 3b6u_A 215 SVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISA 294 (372)
T ss_dssp TTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHH
T ss_pred CcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHH
Confidence 9999999999999999999999886544333334556999999999999999999999999999999999999999997
Q ss_pred ----CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCchhhhhhhhh
Q 046715 380 ----KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDSSNFLCSKRQ 451 (501)
Q Consensus 380 ----~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~~~~~~~~~~ 451 (501)
+..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||++|+|++++|++....+.++
T Consensus 295 L~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~~~~~~ 370 (372)
T 3b6u_A 295 LVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLRE 370 (372)
T ss_dssp HHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC---------
T ss_pred HhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcccCHHHHHHHHHHHHHHhhccccceecCChHHHHHHh
Confidence 346999999999999999999999999999999999999999999999999999999999997755444443
No 3
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.2e-86 Score=684.38 Aligned_cols=328 Identities=27% Similarity=0.409 Sum_probs=254.5
Q ss_pred CCCCCCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCcccc--
Q 046715 71 ATSSPSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQ-- 148 (501)
Q Consensus 71 ~~~~~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~-- 148 (501)
..++.+++|||+||+||++..| ...+...|+.+.++..+.+.++....
T Consensus 4 ~~~d~~~~i~V~vRvRP~~~~E------------------------------~~~~~~~~v~~~~~~~~~~d~~~~~~~~ 53 (355)
T 3lre_A 4 TEEDLCHHMKVVVRVRPENTKE------------------------------KAAGFHKVVHVVDKHILVFDPKQEEVSF 53 (355)
T ss_dssp --------CEEEEEECCCCHHH------------------------------HHTTCCBSEEECSSSEEEEC--------
T ss_pred ChhhccCCCEEEEEeCcCChHH------------------------------HhcCCceEEEecCCceEEecCCCCccee
Confidence 4456789999999999999877 24556667777776655544332110
Q ss_pred ----------ccccccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCc
Q 046715 149 ----------TSKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMV 218 (501)
Q Consensus 149 ----------~~~~~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIi 218 (501)
..+.......|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|+.+++|||
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Gii 133 (355)
T 3lre_A 54 FHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVM 133 (355)
T ss_dssp ----------------CCEEEECSEEECTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHH
T ss_pred ecccccccccchhccCCCceEEeceEECCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCee
Confidence 0011123457999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccccCCCccceEEEEEEEEeeccCCCcceeccCCCCcccccc-----cccccCceEEEecCHHHHHHHH
Q 046715 219 PIALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLCMQ-----QSTIKGLQEIIISDAAQAESLI 293 (501)
Q Consensus 219 pr~~~~LF~~~~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~~~~~-----~~~v~~l~~~~v~s~~e~~~ll 293 (501)
||++++||+.+.+. .....|.|.|||+||||| +|+|||.+...+.++ +.+|.|++++.|.+++|++.+|
T Consensus 134 pr~~~~lf~~i~~~-~~~~~~~v~vS~~EIYnE-----~i~DLL~~~~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll 207 (355)
T 3lre_A 134 YLTMLHLYKCMDEI-KEEKICSTAVSYLEVYNE-----QIRDLLVNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLL 207 (355)
T ss_dssp HHHHHHHHHHHHHT-TTTEEEEEEEEEEEEETT-----EEEESSSCCCCBEEEECTTSCEEEETCCCBCCCSHHHHHHHH
T ss_pred ehhhhHHHHhhhhh-ccCceEEEEEEEEEEECC-----EEEECcCCCCCceeEEcCCCCEEeeeeeEEecCCHHHHHHHH
Confidence 99999999999873 345679999999999998 999999887766654 5689999999999999999999
Q ss_pred HHhhccccccccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHH
Q 046715 294 ARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMV 373 (501)
Q Consensus 294 ~~g~~~R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~ 373 (501)
..|.++|++++|.+|..|||||+||+|++.+.............|+|+|||||||||..++++.|.+++|+.+||+||++
T Consensus 208 ~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~a 287 (355)
T 3lre_A 208 DNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLA 287 (355)
T ss_dssp HHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSCTTCCCCCEEEEEEECCCCCC-----------------CHHHHH
T ss_pred HHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCCCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987655444444567999999999999999999999999999999999999
Q ss_pred HHHHhc-------CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccC
Q 046715 374 FGLCLR-------KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKI 434 (501)
Q Consensus 374 L~~vi~-------~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I 434 (501)
||+||. +..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 288 Lg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 288 LGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp HHHHHHHHC--------CCGGGSHHHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999997 2359999999999999999999999999999999999999999999999999987
No 4
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-86 Score=687.76 Aligned_cols=329 Identities=30% Similarity=0.446 Sum_probs=242.1
Q ss_pred CCCCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCcccccccc
Q 046715 73 SSPSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTSKR 152 (501)
Q Consensus 73 ~~~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~~~ 152 (501)
....++|+|+|||||+...| ...+...|+...++.++.+.++...
T Consensus 17 ~~~~~~irV~vRvRP~~~~E------------------------------~~~~~~~~v~~~~~~~~~i~~~~~~----- 61 (388)
T 3bfn_A 17 QGPPARVRVAVRLRPFVDGT------------------------------AGASDPPCVRGMDSCSLEIANWRNH----- 61 (388)
T ss_dssp SSCCCCCEEEEEECCCC---------------------------------------------------------------
T ss_pred cCCCCCEEEEEECCCCChhh------------------------------hccCCCceEEecCCCeEEEecCCCC-----
Confidence 34569999999999999877 1233456777667777777654321
Q ss_pred ccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcccc
Q 046715 153 IKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKI 232 (501)
Q Consensus 153 ~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~ 232 (501)
.....|.||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|+++++|||||++++||+.+...
T Consensus 62 -~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~ 140 (388)
T 3bfn_A 62 -QETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREE 140 (388)
T ss_dssp --CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHH
T ss_pred -CCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHh
Confidence 1245699999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred c--CCCccceEEEEEEEEeeccCCCcceeccCCCCc-ccccc-----cccccCceEEEecCHHHHHHHHHHhhccccccc
Q 046715 233 R--SSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV-DLCMQ-----QSTIKGLQEIIISDAAQAESLIARAMLKRATAM 304 (501)
Q Consensus 233 ~--~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~-~~~~~-----~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~ 304 (501)
. .....|.|+|||+||||| +|+|||.+.. .+.++ +.+|.|++++.|.+++|++.+|..|.++|++++
T Consensus 141 ~~~~~~~~~~V~vS~lEIYnE-----~i~DLL~~~~~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~ 215 (388)
T 3bfn_A 141 GAEGRPWALSVTMSYLEIYQE-----KVLDLLDPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGA 215 (388)
T ss_dssp TSTTCSEEEEEEEEEEEEETT-----EEEESSSCSSCBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC------
T ss_pred hccCCCceEEEEEEEEEEECC-----eeeehhccCCCCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhcccccc
Confidence 2 345679999999999998 9999997653 44443 568999999999999999999999999999999
Q ss_pred cCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc----C
Q 046715 305 TNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR----K 380 (501)
Q Consensus 305 t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~----~ 380 (501)
|.+|..|||||+||+|+|.+...... .....|+|+|||||||||..++++.|.+++|+..||+||++||+||. +
T Consensus 216 T~~N~~SSRSH~If~i~v~~~~~~~~--~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~ 293 (388)
T 3bfn_A 216 TRLNQRSSRSHAVLLVKVDQRERLAP--FRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQG 293 (388)
T ss_dssp -----CGGGSEEEEEEEEEEEESSTT--CCEEEEEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCCeEEEEEEEEEeccCCC--CceeEEEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcC
Confidence 99999999999999999988654322 12346899999999999999999999999999999999999999997 6
Q ss_pred CCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCchh
Q 046715 381 PLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDSSN 444 (501)
Q Consensus 381 ~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~~~ 444 (501)
..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||++|+|++++|.+.
T Consensus 294 ~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~ 357 (388)
T 3bfn_A 294 LPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESL 357 (388)
T ss_dssp CSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHHHHHHHHHHHCSEEEEC---------
T ss_pred CCCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHHHHHHHHHHHHHHhhCcCcCcccCCC
Confidence 6799999999999999999999999999999999999999999999999999999999988663
No 5
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=1e-85 Score=679.21 Aligned_cols=335 Identities=25% Similarity=0.361 Sum_probs=286.5
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCccccccccc
Q 046715 74 SPSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTSKRI 153 (501)
Q Consensus 74 ~~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~~~~ 153 (501)
+.+++|+||||+||+...|. ..+...++...+..++......
T Consensus 2 e~~~~i~V~vRvRP~~~~E~------------------------------~~~~~~~~~~~~~~~v~~~~~~-------- 43 (369)
T 3cob_A 2 DMKGKIRVYCRLRPLCEKEI------------------------------IAKERNAIRSVDEFTVEHLWKD-------- 43 (369)
T ss_dssp --CCBCEEEEEECCCCHHHH------------------------------HTTCCBCEEECSSSEEEEECTT--------
T ss_pred CCCCCeEEEEECCCCChhhc------------------------------cCCCcEEEEcCCcEEEEecCCC--------
Confidence 46799999999999987651 1122223333333333332110
Q ss_pred cceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhccccc
Q 046715 154 KSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIR 233 (501)
Q Consensus 154 ~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~~ 233 (501)
...+.|.||+||+++++|++||+. +.|+|+++++|||+||||||||||||||||+|++.++|||||++++||+.+.. .
T Consensus 44 ~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~-~ 121 (369)
T 3cob_A 44 DKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKK-D 121 (369)
T ss_dssp SCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHH-T
T ss_pred CCceEEecCEEECCCCCcceehhh-hhhhhHhhhcCCceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHh-h
Confidence 123569999999999999999999 79999999999999999999999999999999999999999999999999987 3
Q ss_pred CCCccceEEEEEEEEeeccCCCcceeccCCCCc----cccc-----ccccccCceEEEecCHHHHHHHHHHhhccccccc
Q 046715 234 SSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV----DLCM-----QQSTIKGLQEIIISDAAQAESLIARAMLKRATAM 304 (501)
Q Consensus 234 ~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~----~~~~-----~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~ 304 (501)
.....|.|++||+||||| +|+|||.+.. .+.+ .+.+|.|++++.|.+++|++.+|..|.++|++++
T Consensus 122 ~~~~~~~v~vS~~EIYnE-----~i~DLL~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~ 196 (369)
T 3cob_A 122 SNKFSFSLKAYMVELYQD-----TLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTG 196 (369)
T ss_dssp TTTEEEEEEEEEEEECSS-----CEEESSCCSSSCCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCS
T ss_pred ccCceeEEEEEEEEEeCc-----eeeecCCCcccCCcceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeec
Confidence 334789999999999998 9999997642 3333 3468999999999999999999999999999999
Q ss_pred cCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc----C
Q 046715 305 TNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR----K 380 (501)
Q Consensus 305 t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~----~ 380 (501)
|.+|..|||||+||+|+|.+...... ....|+|+|||||||||..++++.|.+++|+.+||+||++||+||. +
T Consensus 197 T~~N~~SSRSH~if~i~v~~~~~~~~---~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~ 273 (369)
T 3cob_A 197 TLMNEQSSRSHLIVSVIIESTNLQTQ---AIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSG 273 (369)
T ss_dssp CCTTCHHHHSEEEEEEEEEEEETTTC---CEEEEEEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCcceEEEEEEEEEecCCCC---cEEEEEEEEEeCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999988764332 2446899999999999999999999999999999999999999997 6
Q ss_pred CCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCch--hhhhhhhhccchh
Q 046715 381 PLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDSS--NFLCSKRQLPSLS 456 (501)
Q Consensus 381 ~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~~--~~~~~~~~~~~l~ 456 (501)
..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||++|+|.+++|.+ ++..|+++++.++
T Consensus 274 ~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~~ei~~L~~~l~~~~ 351 (369)
T 3cob_A 274 NQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKKLVSYWK 351 (369)
T ss_dssp CSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCEECHHHHHHHHHTTCC-
T ss_pred CCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhcccCCcccCCHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999988865 5556666666663
No 6
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=4.5e-86 Score=679.67 Aligned_cols=322 Identities=27% Similarity=0.419 Sum_probs=287.5
Q ss_pred CCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCcccccccccc
Q 046715 75 PSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTSKRIK 154 (501)
Q Consensus 75 ~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~~~~~ 154 (501)
..++|+|+||+||+...| ...+...|+.+.++.++.+....
T Consensus 4 ~~~~i~V~vRvRP~~~~E------------------------------~~~~~~~~v~~~~~~~~~~~~~~--------- 44 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVE------------------------------IESGGQPIVTFQGPDTCTVDSKE--------- 44 (355)
T ss_dssp SSCBCEEEEEECCCCHHH------------------------------HTTTCCBCEEECSTTEEEECSTT---------
T ss_pred CCCCeEEEEECCCCChHH------------------------------hhcCCceEEEEcCCCeEEEccCC---------
Confidence 469999999999998766 23456677888877777664321
Q ss_pred ceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccC----CCCCCCchhHHHHHHhhcc
Q 046715 155 SEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGC----PREPGMVPIALKRIFKGTT 230 (501)
Q Consensus 155 ~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~----~~~~GIipr~~~~LF~~~~ 230 (501)
....|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|+ ++++|||||++++||+.+.
T Consensus 45 ~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~ 124 (355)
T 1goj_A 45 AQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSIL 124 (355)
T ss_dssp CCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHH
T ss_pred CccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHH
Confidence 235699999999999999999999999999999999999999999999999999996 3568999999999999987
Q ss_pred cccCCCccceEEEEEEEEeeccCCCcceeccCCCCc-cccc-----ccccccCceEEEecCHHHHHHHHHHhhccccccc
Q 046715 231 KIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV-DLCM-----QQSTIKGLQEIIISDAAQAESLIARAMLKRATAM 304 (501)
Q Consensus 231 ~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~-~~~~-----~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~ 304 (501)
. ...+..|.|++||+||||| +|+|||.+.. .+.+ ++.+|+|++++.|.+++|++.+|..|.++|++++
T Consensus 125 ~-~~~~~~~~v~vS~~EIYnE-----~i~DLL~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~ 198 (355)
T 1goj_A 125 S-SAANIEYTVRVSYMEIYME-----RIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAA 198 (355)
T ss_dssp T-SCTTEEEEEEEEEEEEETT-----EEEETTSTTCCSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHH
T ss_pred h-cccCceEEEEEEEEEEECC-----EEEEcccCccCCceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCccc
Confidence 6 3456789999999999998 9999997653 3443 3578999999999999999999999999999999
Q ss_pred cCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc-----
Q 046715 305 TNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR----- 379 (501)
Q Consensus 305 t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~----- 379 (501)
|.+|..|||||+||+|+|.+.....+ ....|+|+|||||||||..++++.|.+++|+.+||+||++||+||.
T Consensus 199 T~~N~~SSRSH~if~i~v~~~~~~~~---~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~ 275 (355)
T 1goj_A 199 TNMNQESSRSHSIFVITITQKNVETG---SAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDG 275 (355)
T ss_dssp HHTTCCGGGCEEEEEEEEEEEETTTT---EEEEEEEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCceEEEEEEEEEeccCCC---ceeeeEEEEEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 99999999999999999988764332 2346899999999999999999999999999999999999999997
Q ss_pred CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCchh
Q 046715 380 KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDSSN 444 (501)
Q Consensus 380 ~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~~~ 444 (501)
+..||||||||||+||||+||||++|+||+||||+..+++||++||+||+||++|+|++++|.+.
T Consensus 276 ~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~ 340 (355)
T 1goj_A 276 KSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAEL 340 (355)
T ss_dssp SCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSS
T ss_pred CCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHHHHHHHHHHHhhccCCceeCCCC
Confidence 45799999999999999999999999999999999999999999999999999999999988653
No 7
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=2.4e-86 Score=683.12 Aligned_cols=328 Identities=27% Similarity=0.391 Sum_probs=265.5
Q ss_pred CCCCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcC-CceEEecCCccccccc
Q 046715 73 SSPSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVND-HNSVTLSPPLALQTSK 151 (501)
Q Consensus 73 ~~~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~v~l~~p~~~~~~~ 151 (501)
+...++|+|+||+||+...| ...+...++.+++ ...|.+..+...
T Consensus 4 ~~~~~~i~V~vRvRP~~~~E------------------------------~~~~~~~~v~~~~~~~~v~~~~~~~~---- 49 (359)
T 1x88_A 4 EEKGKNIQVVVRCRPFNLAE------------------------------RKASAHSIVECDPVRKEVSVRTGGLA---- 49 (359)
T ss_dssp -----CCEEEEEECCCCHHH------------------------------HHTTCCCCEEEETTTTEEEEEEEEET----
T ss_pred CCCCCCeEEEEEeCCCChhh------------------------------hhcCCceEEEEcCCCcEEEEeCCCcc----
Confidence 34579999999999998766 1234445555554 456666432111
Q ss_pred cccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCC-----------CCCCchh
Q 046715 152 RIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPR-----------EPGMVPI 220 (501)
Q Consensus 152 ~~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~-----------~~GIipr 220 (501)
.....+.|.||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|+.. .+|||||
T Consensus 50 ~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr 129 (359)
T 1x88_A 50 DKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPR 129 (359)
T ss_dssp TEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHH
T ss_pred CCcCceEEeceEEEeccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHH
Confidence 11134679999999999999999999999999999999999999999999999999999753 3699999
Q ss_pred HHHHHHhhcccccCCCccceEEEEEEEEeeccCCCcceeccCCCCcc----ccc-------ccccccCceEEEecCHHHH
Q 046715 221 ALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVD----LCM-------QQSTIKGLQEIIISDAAQA 289 (501)
Q Consensus 221 ~~~~LF~~~~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~----~~~-------~~~~v~~l~~~~v~s~~e~ 289 (501)
++++||+.+.. .+..|.|+|||+||||| +|+|||.+... +.+ .+.+|.||+++.|.+++|+
T Consensus 130 ~~~~lF~~i~~---~~~~~~v~vS~~EIYnE-----~i~DLL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~ 201 (359)
T 1x88_A 130 TLHQIFEKLTD---NGTEFSVKVSLLEIYNE-----ELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEV 201 (359)
T ss_dssp HHHHHHHHTSS---SSEEEEEEEEEEEEETT-----EEEETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGH
T ss_pred HHHHHHHHHhc---cCceEEEEEEEEEEeCc-----eeeehhcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHH
Confidence 99999998876 46789999999999998 99999976532 232 3568999999999999999
Q ss_pred HHHHHHhhccccccccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhh
Q 046715 290 ESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINN 369 (501)
Q Consensus 290 ~~ll~~g~~~R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~ 369 (501)
+.+|..|.++|++++|.+|..|||||+||+|+|.+.....++......|+|+|||||||||..++++.|.+++|+.+||+
T Consensus 202 ~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INk 281 (359)
T 1x88_A 202 YQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQ 281 (359)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSCEEEEEEEEEEEECCCCCC---------------CCCH
T ss_pred HHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCCCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhH
Confidence 99999999999999999999999999999999987654444443455799999999999999999999999999999999
Q ss_pred hHHHHHHHhc----CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCc
Q 046715 370 TSMVFGLCLR----KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDS 442 (501)
Q Consensus 370 SL~~L~~vi~----~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~ 442 (501)
||++||+||. +..||||||||||+||||+||||++|+||+||||+..+++||++||+||+||++|+|++++|+
T Consensus 282 SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 282 SLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp HHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred HHHHHHHHHHHHhcCCCCCccccchHHHHHHHHhCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 9999999997 678999999999999999999999999999999999999999999999999999999999875
No 8
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=7.5e-86 Score=694.98 Aligned_cols=339 Identities=24% Similarity=0.383 Sum_probs=267.0
Q ss_pred CCCCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcC-CceEEecCCccccc--
Q 046715 73 SSPSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVND-HNSVTLSPPLALQT-- 149 (501)
Q Consensus 73 ~~~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~v~l~~p~~~~~-- 149 (501)
.+.+++|||||||||+...| ...+...++.+++ ...+++..|.....
T Consensus 34 ~~~~~~vrV~vRvRP~~~~E------------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (443)
T 2owm_A 34 KDPGANVRVVVRVRAFLPRE------------------------------LERNAECIVEMDPATERTSLLVPQETDFAD 83 (443)
T ss_dssp CCCCEECEEEEEEECCCHHH------------------------------HHTTCCCCEEECSSSCEEEECCCC------
T ss_pred CCCCCCeEEEEEeCCCChHH------------------------------hhcCCceEEEEcCCCccEEEecCCCccccc
Confidence 44679999999999998766 1234445556654 45666665542111
Q ss_pred -----cccccceeeecccccCCC-------CCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCC
Q 046715 150 -----SKRIKSEVYQGFSYVFSA-------DSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGM 217 (501)
Q Consensus 150 -----~~~~~~~~~f~FD~Vf~~-------~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GI 217 (501)
.......+.|.||+||++ .++|++||+.++.|+|+++|+|||+||||||||||||||||+|+++++||
T Consensus 84 ~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GI 163 (443)
T 2owm_A 84 ARGARSRRVLEEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGL 163 (443)
T ss_dssp ---------CCCEEEECSEEEEESCTTSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCH
T ss_pred ccccccccccCCceEecCeEeCCCCcCCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCch
Confidence 111223567999999976 48999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhhccccc--CCCccceEEEEEEEEeeccCCCcceeccCCCCc------cccc-----ccccccCceEEEec
Q 046715 218 VPIALKRIFKGTTKIR--SSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV------DLCM-----QQSTIKGLQEIIIS 284 (501)
Q Consensus 218 ipr~~~~LF~~~~~~~--~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~------~~~~-----~~~~v~~l~~~~v~ 284 (501)
|||++++||+.+.... ..+..|.|+|||+||||| +|+|||.+.. .+.+ .+.+|.||+++.|.
T Consensus 164 ipr~~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE-----~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~ 238 (443)
T 2owm_A 164 IPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNE-----HVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVR 238 (443)
T ss_dssp HHHHHHHHHHHHHHTTTTSTTCEEEEEEEEEEEETT-----EEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECC
T ss_pred HHHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECC-----EeeEccCccccCCcccccceeECCCCCEeccCCEEEEcC
Confidence 9999999999988642 346789999999999998 9999997621 2333 35689999999999
Q ss_pred CHHHHHHHHHHhhccccccccCCCCCCCCceeEEEEEEeeeeccC-CCccccccceeEeeecCCCccccccCCcchhhhH
Q 046715 285 DAAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSR-GDGVHANDAVLTIIDLAGAEREKRTGNQGARLLE 363 (501)
Q Consensus 285 s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~If~i~v~~~~~~~-~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E 363 (501)
+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+..... .+......|+|+|||||||||..++++.|.+++|
T Consensus 239 s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE 318 (443)
T 2owm_A 239 GLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLRE 318 (443)
T ss_dssp SHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEEEEEEEC-------CCEEEEEEEEEECCCCCC-------------
T ss_pred CHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccc
Confidence 999999999999999999999999999999999999998764332 1222345699999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHhc-----C---------------------CCCcccCcchhhhhchhccCCCceEEEEeecCCCCCC
Q 046715 364 SNFINNTSMVFGLCLR-----K---------------------PLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEED 417 (501)
Q Consensus 364 ~~~IN~SL~~L~~vi~-----~---------------------~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~ 417 (501)
+.+||+||++||+||. + ..||||||||||+||||+|||||+|+||+||||+ +
T Consensus 319 ~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~ 396 (443)
T 2owm_A 319 GSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--D 396 (443)
T ss_dssp -CCSSHHHHHHHHHHHHHCC-------------------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--C
T ss_pred hhhhcHHHHHHHHHHHHHhcccccccccccccccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--c
Confidence 9999999999999997 1 1389999999999999999999999999999997 5
Q ss_pred hHHHHHHHHhHhhcccCccccccCc-hhhhhh
Q 046715 418 YLDTSYLLRQASPYMKIKFDNVEDS-SNFLCS 448 (501)
Q Consensus 418 ~~eTl~TL~fa~ra~~Ik~~~v~~~-~~~~~~ 448 (501)
++||++||+||+||++|+|++++|+ +.....
T Consensus 397 ~~ETlsTLrfA~rak~I~n~~~vN~~d~~~~~ 428 (443)
T 2owm_A 397 YDETLSTLRYADQAKRIRTRAVVNQVDGVSAA 428 (443)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCCCC------
T ss_pred HHHHHHHHHHHHHHhhccccceecccCCccHH
Confidence 9999999999999999999999987 443333
No 9
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=3e-86 Score=685.12 Aligned_cols=327 Identities=27% Similarity=0.420 Sum_probs=269.3
Q ss_pred CCCCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCcccccccc
Q 046715 73 SSPSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTSKR 152 (501)
Q Consensus 73 ~~~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~~~ 152 (501)
...+++|+||||+||+...| ...+...|+.+.+...+.+..+...
T Consensus 19 ~~~~~~i~V~vRvRP~~~~E------------------------------~~~~~~~~v~~~~~~~~~~~~~~~~----- 63 (373)
T 2wbe_C 19 KKSNQNIQVYVRVRPLNSRE------------------------------RCIRSAEVVDVVGPREVVTRHTLDS----- 63 (373)
T ss_dssp CCCCEECEEEEEECCCCHHH------------------------------HHHTCCBCEEEETTTEEEESSSSSS-----
T ss_pred cCCCCCeEEEEEcCCCChhh------------------------------hccCCCceEEEcCCCeEEEecCCCC-----
Confidence 34579999999999998766 1234556777878778877654321
Q ss_pred ccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCC-----------CCCCchhH
Q 046715 153 IKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPR-----------EPGMVPIA 221 (501)
Q Consensus 153 ~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~-----------~~GIipr~ 221 (501)
...+.|.||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|+.. ++|||||+
T Consensus 64 -~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~ 142 (373)
T 2wbe_C 64 -KLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRA 142 (373)
T ss_dssp -TTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHH
T ss_pred -CCceEEeccEEeccccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHH
Confidence 124569999999999999999999999999999999999999999999999999999754 67999999
Q ss_pred HHHHHhhcccccCCCccceEEEEEEEEeeccCCCcceeccCCCCcc--ccc-------ccccccCceEEEecCHHHHHHH
Q 046715 222 LKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVD--LCM-------QQSTIKGLQEIIISDAAQAESL 292 (501)
Q Consensus 222 ~~~LF~~~~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~--~~~-------~~~~v~~l~~~~v~s~~e~~~l 292 (501)
+++||+.+.. .+..|.|+|||+||||| +|+|||.+... +.+ .+.+|.||+++.|.+++|++.+
T Consensus 143 ~~~lF~~i~~---~~~~~~v~vS~~EIYnE-----~i~DLL~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~l 214 (373)
T 2wbe_C 143 LSHLFDELRM---MEVEYTMRISYLELYNE-----ELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKL 214 (373)
T ss_dssp HHHHHHHHHH---CCSCEEEEEEEEEEETT-----EEEESSCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHH
T ss_pred HHHHHHHHHh---cCceEEEEEEEEEEeCC-----eEEECCCCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHH
Confidence 9999999876 34689999999999998 99999976532 222 2468999999999999999999
Q ss_pred HHHhhccccccccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCc-chhhhHHHHHhhhH
Q 046715 293 IARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQ-GARLLESNFINNTS 371 (501)
Q Consensus 293 l~~g~~~R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~-g~~~~E~~~IN~SL 371 (501)
|..|.++|++++|.+|..|||||+||+|+|.+......+......|+|+|||||||||..++++. |.+++|+.+||+||
T Consensus 215 l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL 294 (373)
T 2wbe_C 215 LEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSL 294 (373)
T ss_dssp HHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTCCEEEEEEEEEEECCCC--------------------CHHH
T ss_pred HHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCCCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHH
Confidence 99999999999999999999999999999987543333333345699999999999999999987 99999999999999
Q ss_pred HHHHHHhc----CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCch
Q 046715 372 MVFGLCLR----KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDSS 443 (501)
Q Consensus 372 ~~L~~vi~----~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~~ 443 (501)
++||+||. +..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|||+|+|++++|++
T Consensus 295 ~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~ 370 (373)
T 2wbe_C 295 LTLGRVITALVDRAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQK 370 (373)
T ss_dssp HHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHHHSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEE
T ss_pred HHHHHHHHHHHcCCCcCccccchHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceeccc
Confidence 99999997 6789999999999999999999999999999999999999999999999999999999998854
No 10
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=9.3e-86 Score=679.14 Aligned_cols=317 Identities=26% Similarity=0.377 Sum_probs=262.7
Q ss_pred CCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcC---CceEEecCCccccccc
Q 046715 75 PSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVND---HNSVTLSPPLALQTSK 151 (501)
Q Consensus 75 ~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~v~l~~p~~~~~~~ 151 (501)
.+++|+||||+||+...|. ..+...++.+.+ ..++.+.
T Consensus 9 ~~~~i~V~vRvRP~~~~E~------------------------------~~~~~~~v~~~~~~~~~~i~~~--------- 49 (365)
T 2y65_A 9 AEDSIKVVCRFRPLNDSEE------------------------------KAGSKFVVKFPNNVEENCISIA--------- 49 (365)
T ss_dssp CEEECEEEEEECCCCHHHH------------------------------HTTCCBCEECCSSSTTCEEEET---------
T ss_pred CCCCeEEEEEcCcCChhHh------------------------------ccCCceEEEeCCCCCCcEEEEC---------
Confidence 4699999999999987661 223333444433 3344332
Q ss_pred cccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCC---CCCCCchhHHHHHHhh
Q 046715 152 RIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCP---REPGMVPIALKRIFKG 228 (501)
Q Consensus 152 ~~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~---~~~GIipr~~~~LF~~ 228 (501)
.+.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|.. .++|||||++++||+.
T Consensus 50 ----~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~ 125 (365)
T 2y65_A 50 ----GKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNH 125 (365)
T ss_dssp ----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHH
T ss_pred ----CEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHH
Confidence 145999999999999999999999999999999999999999999999999999974 3569999999999999
Q ss_pred cccccCCCccceEEEEEEEEeeccCCCcceeccCCCCc-cccc-----ccccccCceEEEecCHHHHHHHHHHhhccccc
Q 046715 229 TTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV-DLCM-----QQSTIKGLQEIIISDAAQAESLIARAMLKRAT 302 (501)
Q Consensus 229 ~~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~-~~~~-----~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~ 302 (501)
+.. ...+..|.|++||+||||| +|+|||.+.. .+.+ ++.+|.|++++.|.|++|++.+|..|.++|++
T Consensus 126 i~~-~~~~~~~~v~vS~~EIYnE-----~i~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~ 199 (365)
T 2y65_A 126 IYA-MEVNLEFHIKVSYYEIYMD-----KIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHI 199 (365)
T ss_dssp HHH-CCSCEEEEEEEEEEEEETT-----EEEETTCTTCCSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTT
T ss_pred HHh-ccCCceEEEEEEEEEEECC-----eeeecccCCcCCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhccc
Confidence 976 3456789999999999998 9999997543 3433 35689999999999999999999999999999
Q ss_pred cccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc---
Q 046715 303 AMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR--- 379 (501)
Q Consensus 303 ~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~--- 379 (501)
++|.+|..|||||+||+|+|.+...... ....|+|+|||||||||..++++.|.+++|+.+||+||++||+||.
T Consensus 200 ~~T~~N~~SSRSH~if~i~v~~~~~~~~---~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~ 276 (365)
T 2y65_A 200 AVTNMNEHSSRSHSVFLINVKQENLENQ---KKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALA 276 (365)
T ss_dssp TCSCHHHHHHTSEEEEEEEEEEEETTTC---CEEEEEEEEEECCCCCC----------------CCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCceEEEEEEEEEEecCCC---CEeEEEEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988764433 2345899999999999999999999999999999999999999997
Q ss_pred --CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCch
Q 046715 380 --KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDSS 443 (501)
Q Consensus 380 --~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~~ 443 (501)
+..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||++|+|.+++|.+
T Consensus 277 ~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~ 342 (365)
T 2y65_A 277 DGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEE 342 (365)
T ss_dssp HCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEEE
T ss_pred cCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHHHHHHHHHHHHHHhcccCcceeCCC
Confidence 3579999999999999999999999999999999999999999999999999999999988865
No 11
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=7e-85 Score=669.39 Aligned_cols=319 Identities=25% Similarity=0.367 Sum_probs=269.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEc-CCceEEecCCcccccccccc
Q 046715 76 SETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVN-DHNSVTLSPPLALQTSKRIK 154 (501)
Q Consensus 76 ~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~v~l~~p~~~~~~~~~~ 154 (501)
.|+|+||||+||+...|.. .+...++.+. +++.+...+
T Consensus 3 ~~~i~V~vRvRP~~~~E~~------------------------------~~~~~~v~~~~~~~~i~~~~----------- 41 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREES------------------------------LGETAQVYWKTDNNVIYQVD----------- 41 (349)
T ss_dssp CCCEEEEEEECCCSCSSCT------------------------------TTTCCCCCEEEETTEEEETT-----------
T ss_pred CCCEEEEEECCCCChhhhc------------------------------cCCCcEEEEeCCCCeEEECC-----------
Confidence 5899999999999987721 1222222222 333443222
Q ss_pred ceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcccccC
Q 046715 155 SEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRS 234 (501)
Q Consensus 155 ~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~~~ 234 (501)
..+.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|+++++|||||++++||+.++. .
T Consensus 42 ~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~--~ 119 (349)
T 1t5c_A 42 GSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKK--F 119 (349)
T ss_dssp SSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGG--C
T ss_pred CCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHh--C
Confidence 12469999999999999999999999999999999999999999999999999999999999999999999999987 4
Q ss_pred CCccceEEEEEEEEeeccCCCcceeccCCCCc---cccc-----ccccccCceEEEecCHHHHHHHHHHhhccccccccC
Q 046715 235 SESTRSFYLSIFEIYSERGKGEKLLDLLPDGV---DLCM-----QQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTN 306 (501)
Q Consensus 235 ~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~---~~~~-----~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~ 306 (501)
.+..|.|+|||+||||| +|+|||.+.. .+.+ ++.+|.|++++.|.+++|++.+|..|.++|++++|.
T Consensus 120 ~~~~~~v~vS~~EIYnE-----~i~DLL~~~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~ 194 (349)
T 1t5c_A 120 PDREFLLRVSYMEIYNE-----TITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETK 194 (349)
T ss_dssp TTEEEEEEEEEEEEETT-----EEEESSSSSCTTCCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSS
T ss_pred cCCcEEEEEEEEEEeCC-----EEEEccCCCCCCCCceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccccccccc
Confidence 56789999999999998 9999997643 3333 356899999999999999999999999999999999
Q ss_pred CCCCCCCceeEEEEEEeeeeccCCCc--cccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc-----
Q 046715 307 SNNQSSRSQCIINLRCAANELSRGDG--VHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR----- 379 (501)
Q Consensus 307 ~n~~SSRSH~If~i~v~~~~~~~~~~--~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~----- 379 (501)
+|..|||||+||+|.+.+........ .....|+|+|||||||||..++++.|.+++|+..||+||++||+||.
T Consensus 195 ~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~ 274 (349)
T 1t5c_A 195 MNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDG 274 (349)
T ss_dssp SSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhcc
Confidence 99999999999999998876443221 22456899999999999999999999999999999999999999997
Q ss_pred -CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCchh
Q 046715 380 -KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDSSN 444 (501)
Q Consensus 380 -~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~~~ 444 (501)
...||||||||||+||||+|||||+|+|||||||+ +++||++||+||+||++|+|++++|.+.
T Consensus 275 ~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~~ETlsTL~fA~rak~I~n~~~vn~~~ 338 (349)
T 1t5c_A 275 QVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVS 338 (349)
T ss_dssp CCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CSHHHHHHHHHHHHHTTCCCCCCCCEEC
T ss_pred CCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CHHHHHHHHHHHHHHhhcccCceeccCC
Confidence 23699999999999999999999999999999997 5999999999999999999999988664
No 12
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=4.4e-85 Score=675.37 Aligned_cols=326 Identities=24% Similarity=0.382 Sum_probs=267.3
Q ss_pred CCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCccccccccccc
Q 046715 76 SETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTSKRIKS 155 (501)
Q Consensus 76 ~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~~~~~~ 155 (501)
.++|+|+||+||+...| ...+...++.+++ +.+.+.+|.... ..
T Consensus 3 ~~~i~V~vRvRP~~~~E------------------------------~~~~~~~~v~~~~-~~~~i~~~~~~~-----~~ 46 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSRE------------------------------MSRDSKCIIQMSG-STTTIVNPKQPK-----ET 46 (366)
T ss_dssp -CCEEEEEEECCCCHHH------------------------------HHTTCCBCEEEET-TEEEECCTTCTT-----SC
T ss_pred CCCcEEEEECCCCChhh------------------------------ccCCCCeEEEECC-CcEEEeccCCCC-----CC
Confidence 47999999999998766 1233444555554 455565554321 12
Q ss_pred eeeecccccCCCC--------CchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCC--CCCCCchhHHHHH
Q 046715 156 EVYQGFSYVFSAD--------SSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCP--REPGMVPIALKRI 225 (501)
Q Consensus 156 ~~~f~FD~Vf~~~--------~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~--~~~GIipr~~~~L 225 (501)
.+.|.||+||+++ ++|++||+.++.|+|+++|+|||+||||||||||||||||+|+. +++|||||++++|
T Consensus 47 ~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~l 126 (366)
T 2zfi_A 47 PKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDL 126 (366)
T ss_dssp CEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHH
T ss_pred ceEEecceEeecCccccccccCcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHH
Confidence 4579999999987 89999999999999999999999999999999999999999984 5789999999999
Q ss_pred HhhcccccCCCccceEEEEEEEEeeccCCCcceeccCCCCc--cccc-----ccccccCceEEEecCHHHHHHHHHHhhc
Q 046715 226 FKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV--DLCM-----QQSTIKGLQEIIISDAAQAESLIARAML 298 (501)
Q Consensus 226 F~~~~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~--~~~~-----~~~~v~~l~~~~v~s~~e~~~ll~~g~~ 298 (501)
|+.+.+....+..|.|+|||+||||| +|+|||.+.. .+.+ .+.+|+||+++.|.+++|++.+|..|.+
T Consensus 127 F~~i~~~~~~~~~~~v~vS~~EIYnE-----~v~DLL~~~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~ 201 (366)
T 2zfi_A 127 FSRINDTTNDNMSYSVEVSYMEIYCE-----RVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNK 201 (366)
T ss_dssp HHHHHTCCCTTEEEEEEEEEEEEETT-----EEEETTCTTTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHH
T ss_pred HHHHhhcccCCeeEEEEEEEEEeeCC-----eEEEccccccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhh
Confidence 99998755567889999999999998 9999997653 3444 3568999999999999999999999999
Q ss_pred cccccccCCCCCCCCceeEEEEEEeeeeccCCCc-cccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHH
Q 046715 299 KRATAMTNSNNQSSRSQCIINLRCAANELSRGDG-VHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLC 377 (501)
Q Consensus 299 ~R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~-~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~v 377 (501)
+|++++|.+|..|||||+||+|+|.+.......+ .....|+|+|||||||||..++++.|.+++|+..||+||++||+|
T Consensus 202 ~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~v 281 (366)
T 2zfi_A 202 PRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKV 281 (366)
T ss_dssp HHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCCCcceEEEEEEEEEecccCCCCccceeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHH
Confidence 9999999999999999999999998876544322 234569999999999999999999999999999999999999999
Q ss_pred hc----------------CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccC
Q 046715 378 LR----------------KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVED 441 (501)
Q Consensus 378 i~----------------~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~ 441 (501)
|. +..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||++|+|+++++
T Consensus 282 I~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~ 361 (366)
T 2zfi_A 282 ISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361 (366)
T ss_dssp HHHHHHHC--------------CCGGGSHHHHHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC---------
T ss_pred HHHHHhcccccccccccccCCcccccccHHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCC
Confidence 96 13699999999999999999999999999999999999999999999999999999988866
Q ss_pred c
Q 046715 442 S 442 (501)
Q Consensus 442 ~ 442 (501)
.
T Consensus 362 ~ 362 (366)
T 2zfi_A 362 H 362 (366)
T ss_dssp -
T ss_pred C
Confidence 3
No 13
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=5.3e-85 Score=664.75 Aligned_cols=308 Identities=27% Similarity=0.384 Sum_probs=275.3
Q ss_pred CCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCcccccccccc
Q 046715 75 PSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTSKRIK 154 (501)
Q Consensus 75 ~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~~~~~ 154 (501)
.+++|+|+||+||+...| ...+...|+.+.+++++.+..
T Consensus 5 ~~~~i~V~vRvRP~~~~E------------------------------~~~~~~~~~~~~~~~~~~~~~----------- 43 (325)
T 1bg2_A 5 AECNIKVMCRFRPLNESE------------------------------VNRGDKYIAKFQGEDTVVIAS----------- 43 (325)
T ss_dssp SSCEEEEEEEECCCCHHH------------------------------HHHTCCBCCEEETTTEEEETT-----------
T ss_pred CCCCEEEEEEcCCCChhH------------------------------hccCCeeEEEECCCCeEEECC-----------
Confidence 469999999999998766 123445566677777776632
Q ss_pred ceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCC---CCCchhHHHHHHhhccc
Q 046715 155 SEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPRE---PGMVPIALKRIFKGTTK 231 (501)
Q Consensus 155 ~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~---~GIipr~~~~LF~~~~~ 231 (501)
+.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|+..+ .|||||++++||+.+..
T Consensus 44 --~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~ 121 (325)
T 1bg2_A 44 --KPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYS 121 (325)
T ss_dssp --EEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHH
T ss_pred --EEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHh
Confidence 3599999999999999999999999999999999999999999999999999997544 59999999999999876
Q ss_pred ccCCCccceEEEEEEEEeeccCCCcceeccCCCC-ccccc-----ccccccCceEEEecCHHHHHHHHHHhhcccccccc
Q 046715 232 IRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDG-VDLCM-----QQSTIKGLQEIIISDAAQAESLIARAMLKRATAMT 305 (501)
Q Consensus 232 ~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~-~~~~~-----~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t 305 (501)
...+..|.|++||+||||| +|+|||.+. ..+.+ ++.+|.|++++.|.+++|++++|..|.++|++++|
T Consensus 122 -~~~~~~~~v~vS~~EIYnE-----~v~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T 195 (325)
T 1bg2_A 122 -MDENLEFHIKVSYFEIYLD-----KIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVT 195 (325)
T ss_dssp -HCSSEEEEEEEEEEEEETT-----EEEESSCTTCCSBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCS
T ss_pred -ccCCceEEEEEEEEEEecC-----eeeecccCCCCCceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeec
Confidence 3456789999999999998 999999754 23443 35689999999999999999999999999999999
Q ss_pred CCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc----CC
Q 046715 306 NSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR----KP 381 (501)
Q Consensus 306 ~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~----~~ 381 (501)
.+|..|||||+||+|++.+...... ....|+|+|||||||||..++++.|.+++|+.+||+||++||+||. +.
T Consensus 196 ~~N~~SSRSH~if~i~v~~~~~~~~---~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~ 272 (325)
T 1bg2_A 196 NMNEHSSRSHSIFLINVKQENTQTE---QKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS 272 (325)
T ss_dssp CHHHHHHHSEEEEEEEEEEEETTTC---CEEEEEEEEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCeEEEEEEEEEEecCCC---cEEEEEEEEEECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999988764332 2345899999999999999999999999999999999999999997 67
Q ss_pred CCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccC
Q 046715 382 LQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKI 434 (501)
Q Consensus 382 ~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I 434 (501)
.||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 273 ~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 273 TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp SCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred CCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHHHHHHHHHHHhccC
Confidence 89999999999999999999999999999999999999999999999999987
No 14
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=1.3e-84 Score=669.49 Aligned_cols=327 Identities=26% Similarity=0.340 Sum_probs=274.9
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCcccccccccccee
Q 046715 78 TLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTSKRIKSEV 157 (501)
Q Consensus 78 ~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~~~~~~~~ 157 (501)
+||||||+||+...| ...+...|+.+.++.+|.+.+|............+
T Consensus 1 ~IrV~vRvRP~~~~E------------------------------~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~ 50 (360)
T 1ry6_A 1 MIKVVVRKRPLSELE------------------------------KKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERH 50 (360)
T ss_dssp CEEEEEEECCCCHHH------------------------------HHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEE
T ss_pred CeEEEEECCCCChHH------------------------------hccCCceEEEECCCCEEEEeCCccccccccccccc
Confidence 699999999998766 23455678888888888888765433322223456
Q ss_pred eecccccCCCCCchhHHHHhhhhhHHHHHhc-CCCeEEEeccCCCCCcccccccCC-----CCCCCchhHHHHHHhhccc
Q 046715 158 YQGFSYVFSADSSQGEVYEKMVNPLVEDFLK-GKSGMLAALGPSGSGKTHTIFGCP-----REPGMVPIALKRIFKGTTK 231 (501)
Q Consensus 158 ~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~-G~n~tI~aYGqTgSGKTyTm~G~~-----~~~GIipr~~~~LF~~~~~ 231 (501)
.|.||+||+++++|++||+.++.|+|+++++ ||||||||||||||||||||+|+. +++|||||++++||+.++.
T Consensus 51 ~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~ 130 (360)
T 1ry6_A 51 EFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNI 130 (360)
T ss_dssp EEECSEEECTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHH
T ss_pred eEEeeeEecCCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHh
Confidence 7999999999999999999999999999995 999999999999999999999974 6789999999999999876
Q ss_pred ccCCCccceEEEEEEEEeeccCCCcceeccCCCCccccc-----ccccccCceEEEecCHHHHHHHHHHhhccccccccC
Q 046715 232 IRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLCM-----QQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTN 306 (501)
Q Consensus 232 ~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~~~~-----~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~ 306 (501)
...+..+.|+|||+||||| +|+|||.+...+.+ .+.+|+|++++.|.+++|++.+|..|.++|++++|.
T Consensus 131 -~~~~~~~~v~vS~~EIYnE-----~v~DLL~~~~~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~ 204 (360)
T 1ry6_A 131 -YDKDNTKGIFISFYEIYCG-----KLYDLLQKRKMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNS 204 (360)
T ss_dssp -HCSSSCEEEEEEEEEEETT-----EEEESCCC-----------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTC
T ss_pred -hccCCceEEEEEEEEeeCC-----eeEEcccCCccceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhccccc
Confidence 3445678999999999998 99999987654433 357899999999999999999999999999999999
Q ss_pred CCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcc-hhhhHHHHHhhhHHHHHHHhc----CC
Q 046715 307 SNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQG-ARLLESNFINNTSMVFGLCLR----KP 381 (501)
Q Consensus 307 ~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g-~~~~E~~~IN~SL~~L~~vi~----~~ 381 (501)
+|..|||||+||+|++.+.. . ....|+|+|||||||||..++++.| .+++|+..||+||++||+||. +.
T Consensus 205 ~N~~SSRSH~if~i~v~~~~---~---~~~~skL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~ 278 (360)
T 1ry6_A 205 QNDESSRSHAILNIDLKDIN---K---NTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK 278 (360)
T ss_dssp CTTGGGGSEEEEEEEEEETT---T---TEEEEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred ccCCCccceEEEEEEEEecc---C---CcceeEEEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999997642 1 1345899999999999999998876 568899999999999999997 67
Q ss_pred CCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCchhhh
Q 046715 382 LQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDSSNFL 446 (501)
Q Consensus 382 ~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~~~~~ 446 (501)
.||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|||+|+|.++.+....+
T Consensus 279 ~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~i~n~~~~~~~~~n 343 (360)
T 1ry6_A 279 NHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGKPIPN 343 (360)
T ss_dssp TSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC-------------
T ss_pred CCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCcccHHHHHHHHHHHHHHhhcccCcccCCCCcc
Confidence 89999999999999999999999999999999999999999999999999999998776644433
No 15
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-84 Score=668.72 Aligned_cols=318 Identities=27% Similarity=0.377 Sum_probs=250.9
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCcccccc--c
Q 046715 74 SPSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTS--K 151 (501)
Q Consensus 74 ~~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~--~ 151 (501)
..+++|||||||||+...| ...+...++++.|.+..+...... .
T Consensus 21 ~~~~~i~V~vRvRP~~~~e----------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~ 66 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFA----------------------------------HEMIRYGDDKRSIDIHLKKDIRRGVVN 66 (359)
T ss_dssp ---CCEEEEEEECCCSSCC----------------------------------TTTEEECTTSSEEEEECCCCSSHHHHT
T ss_pred CCCCCEEEEEEcCCCCccc----------------------------------ccceeecCCCcEEEEecCCcccccccc
Confidence 3569999999999987544 112223345677777766543211 1
Q ss_pred cccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCC---CCCCchhHHHHHHhh
Q 046715 152 RIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPR---EPGMVPIALKRIFKG 228 (501)
Q Consensus 152 ~~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~---~~GIipr~~~~LF~~ 228 (501)
.....+.|.||+||+ +++|++||+.+++|+|+++|+|||+||||||||||||||||+|+.. ++|||||++++||+.
T Consensus 67 ~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~ 145 (359)
T 3nwn_A 67 NQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRM 145 (359)
T ss_dssp TSCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHH
T ss_pred CCcCceEeecCccCC-CCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHH
Confidence 223456799999997 6899999999999999999999999999999999999999999754 479999999999998
Q ss_pred cccccCCCccceEEEEEEEEeeccCCCcceeccCCCCcc-------ccc----ccccccCceEEEecCHHHHHHHHHHhh
Q 046715 229 TTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVD-------LCM----QQSTIKGLQEIIISDAAQAESLIARAM 297 (501)
Q Consensus 229 ~~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~-------~~~----~~~~v~~l~~~~v~s~~e~~~ll~~g~ 297 (501)
+.. ..+..|.|+|||+||||| +|+|||.+... ..+ .+.++.|++++.|.+++|++.+|..|.
T Consensus 146 ~~~--~~~~~~~v~vS~~EIYnE-----~i~DLL~~~~~~~~~~~~~~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~ 218 (359)
T 3nwn_A 146 IEE--RPTHAITVRVSYLEIYNE-----SLFDLLSTLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGE 218 (359)
T ss_dssp HHT--CTTSCEEEEEEEEEEETT-----EEEETTSSSTTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHH
T ss_pred hhc--CCCCcEEEEEEEEEEecc-----ccccccccccccccccccceEEecCCceEEeccEEEEecCHHHHHHHHHhhh
Confidence 876 456789999999999998 99999975322 111 357899999999999999999999999
Q ss_pred ccccccccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHH
Q 046715 298 LKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLC 377 (501)
Q Consensus 298 ~~R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~v 377 (501)
++|.+++|.+|..|||||+||+|+|.+......+. ....|+|+|||||||||..++++.|++++|+.+||+||++||+|
T Consensus 219 ~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~-~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~v 297 (359)
T 3nwn_A 219 TNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEE-KYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQA 297 (359)
T ss_dssp HHHHHHHHHHTCCGGGCEEEEEEEEEEC--------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHH
T ss_pred hhcccccccCccccCcceEEEEEEEEeecccccCc-ccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHH
Confidence 99999999999999999999999998765433322 24469999999999999999999999999999999999999999
Q ss_pred hc-----CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccC
Q 046715 378 LR-----KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKI 434 (501)
Q Consensus 378 i~-----~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I 434 (501)
|. +..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 298 I~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 298 IIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp HHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred HHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 97 4569999999999999999999999999999999999999999999999999987
No 16
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=6.8e-84 Score=657.89 Aligned_cols=313 Identities=27% Similarity=0.415 Sum_probs=262.1
Q ss_pred CCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEc--CCceEEecCCcccccccc
Q 046715 75 PSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVN--DHNSVTLSPPLALQTSKR 152 (501)
Q Consensus 75 ~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~v~l~~p~~~~~~~~ 152 (501)
.+|+|+|+|||||+...|.. ..+...++.++ ++..+.+...
T Consensus 2 ~~~~i~V~vRvRP~~~~e~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~-------- 44 (330)
T 2h58_A 2 SKGNIRVIARVRPVTKEDGE-----------------------------GPEATNAVTFDADDDSIIHLLHK-------- 44 (330)
T ss_dssp ---CEEEEEEECCCCGGGCS-----------------------------SGGGSBCEEECSSCTTEEEEEET--------
T ss_pred CCCCEEEEEEcCCCChhhcc-----------------------------cCCCccEEEEeCCCCcEEEEcCC--------
Confidence 46999999999999876611 11122344443 3334443221
Q ss_pred ccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcccc
Q 046715 153 IKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKI 232 (501)
Q Consensus 153 ~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~ 232 (501)
.....|.||+||+++++|++||+. +.|+|+++++|||+||||||||||||||||+|+++++|||||++++||+.+++
T Consensus 45 -~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~- 121 (330)
T 2h58_A 45 -GKPVSFELDKVFSPQASQQDVFQE-VQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQE- 121 (330)
T ss_dssp -TEEEEEECSEEECTTCCHHHHHTT-THHHHHHHHTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHT-
T ss_pred -CCeeEEecCeEeCCCCCcHhHHHH-HHHHHHHHhCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhc-
Confidence 124569999999999999999998 69999999999999999999999999999999999999999999999999976
Q ss_pred cCCCccceEEEEEEEEeeccCCCcceeccCCCCc--cccc-------ccccccCceEEEecCHHHHHHHHHHhhcccccc
Q 046715 233 RSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV--DLCM-------QQSTIKGLQEIIISDAAQAESLIARAMLKRATA 303 (501)
Q Consensus 233 ~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~--~~~~-------~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~ 303 (501)
...+..|.|+|||+||||| +|+|||.+.. .+.+ .+.+|.|++++.|.|++|++.+|..|.++|+++
T Consensus 122 ~~~~~~~~v~vS~~EIYnE-----~i~DLL~~~~~~~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~ 196 (330)
T 2h58_A 122 KASDWEYTITVSAAEIYNE-----VLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTE 196 (330)
T ss_dssp SCTTEEEEEEEEEEEEETT-----EEEETTSCSSCCCCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCT
T ss_pred ccCCceEEEEEEEEEEECC-----ChhhcccccccccceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcc
Confidence 4456789999999999998 9999997542 2222 356899999999999999999999999999999
Q ss_pred ccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc----
Q 046715 304 MTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR---- 379 (501)
Q Consensus 304 ~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~---- 379 (501)
+|.+|..|||||+||+|++.+.....+ ....|+|+|||||||||..++++.|.+++|+..||+||++|++||.
T Consensus 197 ~T~~N~~SSRSH~if~i~v~~~~~~~~---~~~~skL~lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~ 273 (330)
T 2h58_A 197 FTNLNEHSSRSHALLIVTVRGVDCSTG---LRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRS 273 (330)
T ss_dssp TCCSCSCGGGSEEEEEEEEEEEETTTT---EEEEEEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCCcCCccEEEEEEEEEEecCCC---cEEEEEEEEEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhc
Confidence 999999999999999999988654322 2346899999999999999999999999999999999999999997
Q ss_pred CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCc
Q 046715 380 KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIK 435 (501)
Q Consensus 380 ~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik 435 (501)
+..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||++|+
T Consensus 274 ~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 274 RQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp TCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC---
T ss_pred CCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhhCc
Confidence 67899999999999999999999999999999999999999999999999999986
No 17
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.4e-84 Score=668.55 Aligned_cols=336 Identities=28% Similarity=0.380 Sum_probs=241.0
Q ss_pred CCCCCCCCCCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCcc
Q 046715 67 KSSSATSSPSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLA 146 (501)
Q Consensus 67 ~~~~~~~~~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~ 146 (501)
++|+...+.+++|||||||||+...|...... ...++.. ......+..+|.+..|..
T Consensus 12 ~~hn~~~~~~~~irV~vRvRP~~~~E~~~~~~-----~~~~~~~------------------~~~~~~~~~~i~~~~~~~ 68 (376)
T 2rep_A 12 SGLVPRGSLKGNIRVFCRVRPVLPGEPTPPPG-----LLLFPSG------------------PGGPSDPPTRLSLSRSDE 68 (376)
T ss_dssp -----------CEEEEEEECCCCTTSCCCCGG-----GSBCCC------------------------CCCCEEECCC---
T ss_pred cccchhhccCCCeEEEEEcCCCChhhcccCCc-----eEEEccC------------------cccccCCCcEEEEecCCc
Confidence 57888899999999999999999887221000 0001000 000112345555554321
Q ss_pred cc----ccccccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCC----CCCCc
Q 046715 147 LQ----TSKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPR----EPGMV 218 (501)
Q Consensus 147 ~~----~~~~~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~----~~GIi 218 (501)
.. ........+.|.||+||+++++|++||+. +.++|+++|+|||+||||||||||||||||+|+.. ++|||
T Consensus 69 ~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Gii 147 (376)
T 2rep_A 69 RRGTLSGAPAPPPRHDFSFDRVFPPGSGQDEVFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLI 147 (376)
T ss_dssp --------------CEEECSEEECTTCCHHHHHHH-HHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHH
T ss_pred cccccccccCCCCceeeeecEEcCCcccchhhhhh-HHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcH
Confidence 10 00111123569999999999999999998 56999999999999999999999999999999753 68999
Q ss_pred hhHHHHHHhhcccccCCCccceEEEEEEEEeeccCCCcceeccCCCCc------cccc-------ccccccCceEEEecC
Q 046715 219 PIALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV------DLCM-------QQSTIKGLQEIIISD 285 (501)
Q Consensus 219 pr~~~~LF~~~~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~------~~~~-------~~~~v~~l~~~~v~s 285 (501)
||++++||+.++.....+..|.|++||+||||| +|+|||.+.. .+.+ .+.+|.|++++.|.+
T Consensus 148 pr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE-----~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s 222 (376)
T 2rep_A 148 PRALRHLFSVAQELSGQGWTYSFVASYVEIYNE-----TVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSC 222 (376)
T ss_dssp HHHHHHHHHHHHHGGGGTEEEEEEEEEEEEETT-----EEEETTCCC--------CCEEEC---CCCEEETTCCCEEECS
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEEEEEEECC-----EeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCC
Confidence 999999999998765667899999999999998 9999997641 2322 356899999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcc----hhh
Q 046715 286 AAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQG----ARL 361 (501)
Q Consensus 286 ~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g----~~~ 361 (501)
++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.....+ ....|+|+|||||||||..++++.| +++
T Consensus 223 ~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~---~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rl 299 (376)
T 2rep_A 223 EKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHSSRG---LQCGAPLSLVDLAGSERLDPGLALGPGERERL 299 (376)
T ss_dssp HHHHHHHHHHHHHHHHHCC-----CGGGSEEEEEEEEEEEESSSC---CEEEEEEEEEECCCCC----------------
T ss_pred HHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCC---cEEEeEEEEEECCCCcccccccccCccccchh
Confidence 999999999999999999999999999999999999988654332 2345899999999999999999999 999
Q ss_pred hHHHHHhhhHHHHHHHhc----CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccC
Q 046715 362 LESNFINNTSMVFGLCLR----KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKI 434 (501)
Q Consensus 362 ~E~~~IN~SL~~L~~vi~----~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I 434 (501)
+|+..||+||++||+||. +..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|++++
T Consensus 300 kE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 300 RETQAINSSLSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp --------CHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred hHHhHhhHHHHHHHHHHHHHhcCCCccCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 999999999999999997 6789999999999999999999999999999999999999999999999999864
No 18
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=2.5e-84 Score=670.77 Aligned_cols=319 Identities=26% Similarity=0.356 Sum_probs=255.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCccccccccccc
Q 046715 76 SETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTSKRIKS 155 (501)
Q Consensus 76 ~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~~~~~~ 155 (501)
.++|+||||+||++..| ...+...|+.+.+..++.+..|...........
T Consensus 50 ~~~I~V~vRvRP~~~~E------------------------------~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~ 99 (387)
T 2heh_A 50 EHRICVCVRKRPLNKQE------------------------------LAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLE 99 (387)
T ss_dssp CCSEEEEEEECCCCHHH------------------------------HHTTCCBCEECCBSSEEEEEEEEECTTCCEEEE
T ss_pred CCCeEEEEECCCCChHH------------------------------hccCCceEEEECCCCEEEEeCCCcccccccccc
Confidence 79999999999998766 234455677777777888876654332222234
Q ss_pred eeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccC------CCCCCCchhHHHHHHhhc
Q 046715 156 EVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGC------PREPGMVPIALKRIFKGT 229 (501)
Q Consensus 156 ~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~------~~~~GIipr~~~~LF~~~ 229 (501)
.+.|.||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|+ ..++|||||++++||..+
T Consensus 100 ~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~ 179 (387)
T 2heh_A 100 NQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLK 179 (387)
T ss_dssp EEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHH
T ss_pred ccEEeeeEEEecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHh
Confidence 56799999999999999999999999999999999999999999999999999996 356899999999999998
Q ss_pred ccccCCCccceEEEEEEEEeeccCCCcceeccCCCCcccccc-----cccccCceEEEecCHHHHHHHHHHhhccccccc
Q 046715 230 TKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLCMQ-----QSTIKGLQEIIISDAAQAESLIARAMLKRATAM 304 (501)
Q Consensus 230 ~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~~~~~-----~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~ 304 (501)
......+..|.|+|||+||||| +|+|||.+...+.++ +.+|.||+++.|.+++|++.+|..|.++|++++
T Consensus 180 ~~~~~~~~~~~V~vS~~EIYnE-----~v~DLL~~~~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~ 254 (387)
T 2heh_A 180 NQPCYRKLGLEVYVTFFEIYNG-----KLFDLLNKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQ 254 (387)
T ss_dssp TSHHHHTTTCEEEEEEEEEETT-----EEEETTTTTEECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC----
T ss_pred hcccccCceEEEEEEEEEecCC-----eEEECCCCCccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCccc
Confidence 7644456789999999999998 999999887766654 568999999999999999999999999999999
Q ss_pred cCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccC-CcchhhhHHHHHhhhHHHHHHHhc----
Q 046715 305 TNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTG-NQGARLLESNFINNTSMVFGLCLR---- 379 (501)
Q Consensus 305 t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~-~~g~~~~E~~~IN~SL~~L~~vi~---- 379 (501)
|.+|..|||||+||+|+|.+.. ...|+|+|||||||||..+++ +.+.+++|+..||+||++||+||.
T Consensus 255 T~~N~~SSRSH~Ifti~v~~~~--------~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~ 326 (387)
T 2heh_A 255 TFANSNSSRSHACFQIILRAKG--------RMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ 326 (387)
T ss_dssp -----CGGGSEEEEEEEEESSS--------SEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHT
T ss_pred CcCcCCcccceEEEEEEEEECC--------eeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhc
Confidence 9999999999999999997531 245899999999999998876 466788999999999999999997
Q ss_pred CCCCcccCcchhhhhchhc-cCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccc
Q 046715 380 KPLQKHFQNSLLTRYLRDY-LEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFD 437 (501)
Q Consensus 380 ~~~~vpyRdSkLT~LL~ds-LgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~ 437 (501)
+..||||||||||+||||+ |||||+|+||+||||+..+++||++||+||+|||+|++.
T Consensus 327 ~~~hvPYRdSKLTrlLqdsllGgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 327 NKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp TCSCCCGGGSHHHHHTGGGGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred CCCCCCccccHHHHHHhhhccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 6789999999999999999 699999999999999999999999999999999999863
No 19
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=1.1e-83 Score=662.09 Aligned_cols=322 Identities=27% Similarity=0.400 Sum_probs=254.7
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCcccc-ccccccc
Q 046715 77 ETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQ-TSKRIKS 155 (501)
Q Consensus 77 ~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~-~~~~~~~ 155 (501)
.+|+|+|||||++..| ...+...++.++ ++++.+.++.... .......
T Consensus 1 S~VkV~vRvRPl~~~E------------------------------~~~~~~~vv~~~-~~~~~~~~~~~~~~~~~~~~~ 49 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRE------------------------------TDLHTKCVVDVD-ANKVILNPVNTNLSKGDARGQ 49 (354)
T ss_dssp -CEEEEEEECCCCHHH------------------------------HHHTCCBCEEEE-TTEEEECCC-----------C
T ss_pred CCcEEEEECCCCChhh------------------------------hccCCceEEEeC-CCeEEEeCCccccccccccCC
Confidence 3799999999998766 122334444444 4566666553211 1111223
Q ss_pred eeeecccccC--------CCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHh
Q 046715 156 EVYQGFSYVF--------SADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFK 227 (501)
Q Consensus 156 ~~~f~FD~Vf--------~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~ 227 (501)
.+.|.||+|| ++.++|++||+.++.|+|+++|+|||+||||||||||||||||+|+.+++|||||++++||+
T Consensus 50 ~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~ 129 (354)
T 3gbj_A 50 PKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFE 129 (354)
T ss_dssp CEEEECSEEEECSCTTCTTTBCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHH
T ss_pred ceEEEeeEEeccCccccccccccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHH
Confidence 5679999999 45689999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCccceEEEEEEEEeeccCCCcceeccCCCCc---ccccc-----cccccCceEEEecCHHHHHHHHHHhhcc
Q 046715 228 GTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV---DLCMQ-----QSTIKGLQEIIISDAAQAESLIARAMLK 299 (501)
Q Consensus 228 ~~~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~---~~~~~-----~~~v~~l~~~~v~s~~e~~~ll~~g~~~ 299 (501)
.+......+..|.|+|||+||||| +|+|||.+.. .+.++ +.+|+|++++.|.+++|++.+|..|.++
T Consensus 130 ~i~~~~~~~~~~~v~vS~~EIYnE-----~i~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~ 204 (354)
T 3gbj_A 130 RTQKEENEEQSFKVEVSYMEIYNE-----KVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKS 204 (354)
T ss_dssp HHHHHCBTTEEEEEEEEEEEEETT-----EEEETTC------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHC
T ss_pred HHHhhcccccceeeeceeEEEecC-----eeeEccCCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhc
Confidence 987655667889999999999998 9999997642 34443 5689999999999999999999999999
Q ss_pred ccccccCCCCCCCCceeEEEEEEeeeeccCC-CccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHh
Q 046715 300 RATAMTNSNNQSSRSQCIINLRCAANELSRG-DGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCL 378 (501)
Q Consensus 300 R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~-~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi 378 (501)
|++++|.+|..|||||+||+|++.+...... +......|+|+|||||||||..++++.|.+++|+..||+||++||+||
T Consensus 205 R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI 284 (354)
T 3gbj_A 205 RTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVI 284 (354)
T ss_dssp C----------CTTSEEEEEEEEEEEEECTTSCEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHH
T ss_pred CCeeecCCCCCCCcccEEEEEEEEEEecccCCCCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHH
Confidence 9999999999999999999999987644332 223345689999999999999999999999999999999999999999
Q ss_pred c----------CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccC
Q 046715 379 R----------KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKI 434 (501)
Q Consensus 379 ~----------~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I 434 (501)
. +..||||||||||+||||+|||||+|+||+||||+..+++||++||+||.||+.-
T Consensus 285 ~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~~ 350 (354)
T 3gbj_A 285 SALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKHH 350 (354)
T ss_dssp HHHHHC------CCCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHhhhcccCCCCcccccccHHHHHHHHHhCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhhc
Confidence 6 2469999999999999999999999999999999999999999999999999853
No 20
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=1.9e-83 Score=659.69 Aligned_cols=316 Identities=26% Similarity=0.378 Sum_probs=249.6
Q ss_pred CCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEc----CCceEEecCCcccccc
Q 046715 75 PSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVN----DHNSVTLSPPLALQTS 150 (501)
Q Consensus 75 ~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~v~l~~p~~~~~~ 150 (501)
.+|||||||||||+...|.. .+...++... +...+.+..+...
T Consensus 3 lkgnIrV~vRvRP~~~~E~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 49 (349)
T 3t0q_A 3 LRGNIRVYCRVRPPLLNEPQ------------------------------DMSHILIEKFNEAKGAQSLTINRNEGR--- 49 (349)
T ss_dssp --CEEEEEEEECCCCTTSCC------------------------------CCTTEEECCCBC--CBEEEEEEECC-----
T ss_pred CCCCcEEEEEeCCCCccccc------------------------------cCceEEEeeccCCCCceEEEEcCCCCc---
Confidence 46999999999999987711 1122222211 1234444332211
Q ss_pred ccccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcc
Q 046715 151 KRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTT 230 (501)
Q Consensus 151 ~~~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~ 230 (501)
.....|.||+||+++++|++||+. +.|+|+++++|||+||||||||||||||||+|+ ++|||||++++||+.+.
T Consensus 50 ---~~~~~f~FD~Vf~~~~~Q~~vf~~-v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~ 123 (349)
T 3t0q_A 50 ---ILSYNFQFDMIFEPSHTNKEIFEE-IRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTA 123 (349)
T ss_dssp ---CEEEEEEESEEECTTCCHHHHHHH-HHHHHHGGGTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHH
T ss_pred ---ccceeeecCEEECCCccHHHHHHH-HHHHHHHHHCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHH
Confidence 123569999999999999999998 679999999999999999999999999999996 46999999999999998
Q ss_pred cccCCCccceEEEEEEEEeeccCCCcceeccCCCCc------------cccc------ccccccCceEEEecCHHHHHHH
Q 046715 231 KIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV------------DLCM------QQSTIKGLQEIIISDAAQAESL 292 (501)
Q Consensus 231 ~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~------------~~~~------~~~~v~~l~~~~v~s~~e~~~l 292 (501)
..+..+..|.|+|||+||||| +|+|||.+.. .+.+ ++.+|.|++++.|.+++|++.+
T Consensus 124 ~~~~~~~~~~v~vS~~EIYnE-----~i~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~l 198 (349)
T 3t0q_A 124 NLKERGWNYEMECEYIEIYNE-----TILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTI 198 (349)
T ss_dssp HHGGGTEEEEEEEEEEEEETT-----EEEETTC---------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHH
T ss_pred HhhhcCceeEEEEEEEEEEcc-----hhhccccccccccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHH
Confidence 766677899999999999998 9999997532 1222 3578999999999999999999
Q ss_pred HHHhhccccccccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHH
Q 046715 293 IARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSM 372 (501)
Q Consensus 293 l~~g~~~R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~ 372 (501)
|..|.++|++++|.+|..|||||+||+|+|.+.....+. ...|+|+|||||||||..++++.|++++|+.+||+||+
T Consensus 199 l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~---~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~ 275 (349)
T 3t0q_A 199 LKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGE---TSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLS 275 (349)
T ss_dssp HHHC------------CTGGGSEEEEEEEEEEEETTTCC---EEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccccccccccCCcceEEEEEEEEEecCCCC---eeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHH
Confidence 999999999999999999999999999999887654332 34589999999999999999999999999999999999
Q ss_pred HHHHHhc-------CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccc
Q 046715 373 VFGLCLR-------KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFD 437 (501)
Q Consensus 373 ~L~~vi~-------~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~ 437 (501)
+||+||. +..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|++.||..
T Consensus 276 aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~ 347 (349)
T 3t0q_A 276 CLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347 (349)
T ss_dssp HHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccC
Confidence 9999997 2359999999999999999999999999999999999999999999999999999853
No 21
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=4.1e-83 Score=656.29 Aligned_cols=272 Identities=26% Similarity=0.361 Sum_probs=234.3
Q ss_pred eeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcccccCC
Q 046715 156 EVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSS 235 (501)
Q Consensus 156 ~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~~~~ 235 (501)
.+.|.||+||+++++|++||+. +.|+|+++++|||+||||||||||||||||+|+ ++|||||++++||+.+......
T Consensus 51 ~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~ 127 (347)
T 1f9v_A 51 VHEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTK 127 (347)
T ss_dssp EEEEEESEEECTTCCHHHHHHH-HHHHHGGGGGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGG
T ss_pred ceEEeeCEEECCCCCHHHHHHH-HHHHHHHhcCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhc
Confidence 4679999999999999999998 679999999999999999999999999999996 4799999999999999876566
Q ss_pred CccceEEEEEEEEeeccCCCcceeccCCCCcc----------ccc------ccccccCceEEEecCHHHHHHHHHHhhcc
Q 046715 236 ESTRSFYLSIFEIYSERGKGEKLLDLLPDGVD----------LCM------QQSTIKGLQEIIISDAAQAESLIARAMLK 299 (501)
Q Consensus 236 ~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~----------~~~------~~~~v~~l~~~~v~s~~e~~~ll~~g~~~ 299 (501)
+..|.|+|||+||||| +|+|||.+... +.+ ++.+|.|++++.|.+++|++.+|..|.++
T Consensus 128 ~~~~~v~vS~~EIYnE-----~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~ 202 (347)
T 1f9v_A 128 GWDYKVNCEFIEIYNE-----NIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKL 202 (347)
T ss_dssp TCEEEEEEEEEEEETT-----EEEETTC-------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC--
T ss_pred CCceEEEEEEEEEECC-----eeeeccCCccccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhc
Confidence 7889999999999998 99999976432 222 34689999999999999999999999999
Q ss_pred ccccccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc
Q 046715 300 RATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR 379 (501)
Q Consensus 300 R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~ 379 (501)
|++++|.+|..|||||+||+|+|.+.....+ ....|+|+|||||||||..++++.|.+++|+..||+||++||+||.
T Consensus 203 R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~---~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~ 279 (347)
T 1f9v_A 203 RSTASTASNEHSSASHSIFIIHLSGSNAKTG---AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIH 279 (347)
T ss_dssp ---------CCGGGSEEEEEEEEEEECC--C---CEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeeccCCCCCCCceEEEEEEEEEecCCCC---ceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999987653322 2345899999999999999999999999999999999999999997
Q ss_pred ----C---CCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCcccc
Q 046715 380 ----K---PLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDN 438 (501)
Q Consensus 380 ----~---~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~ 438 (501)
+ ..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|+++|+..+
T Consensus 280 aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~ 345 (347)
T 1f9v_A 280 ALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 345 (347)
T ss_dssp HHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC-
T ss_pred HHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCC
Confidence 2 3799999999999999999999999999999999999999999999999999998654
No 22
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=1e-83 Score=670.10 Aligned_cols=320 Identities=26% Similarity=0.358 Sum_probs=258.9
Q ss_pred CCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCccccccccccc
Q 046715 76 SETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTSKRIKS 155 (501)
Q Consensus 76 ~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~~~~~~ 155 (501)
.++|+||||+||++..| ...+...|+.+.++.++.+..|...........
T Consensus 70 ~~~I~V~vRvRPl~~~E------------------------------~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~ 119 (410)
T 1v8k_A 70 EHRICVCVRKRPLNKQE------------------------------LAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLE 119 (410)
T ss_dssp CCCEEEEEEECCCCHHH------------------------------HHTTCCBCEECCSSSEEEEEEEEECTTCCEEEE
T ss_pred CCCeEEEEEeCCCChhH------------------------------hhcCCccEEEECCCCEEEEecCccccccccccc
Confidence 79999999999998766 234556677887778888876654332222233
Q ss_pred eeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCC------CCCCCchhHHHHHHhhc
Q 046715 156 EVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCP------REPGMVPIALKRIFKGT 229 (501)
Q Consensus 156 ~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~------~~~GIipr~~~~LF~~~ 229 (501)
...|.||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|+. .++|||||++++||..+
T Consensus 120 ~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~ 199 (410)
T 1v8k_A 120 NQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLK 199 (410)
T ss_dssp EEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHH
T ss_pred ceEEeeeEEEecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999999999963 46899999999999998
Q ss_pred ccccCCCccceEEEEEEEEeeccCCCcceeccCCCCcccccc-----cccccCceEEEecCHHHHHHHHHHhhccccccc
Q 046715 230 TKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLCMQ-----QSTIKGLQEIIISDAAQAESLIARAMLKRATAM 304 (501)
Q Consensus 230 ~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~~~~~-----~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~ 304 (501)
......+..|.|+|||+||||| +|+|||.+...+.++ +.+|.||+++.|.|++|++.+|..|.++|++++
T Consensus 200 ~~~~~~~~~~~V~vS~lEIYnE-----~i~DLL~~~~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~ 274 (410)
T 1v8k_A 200 NQPRYRNLNLEVYVTFFEIYNG-----KVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQ 274 (410)
T ss_dssp TSHHHHTTCCEEEEEEEEEETT-----EEEETTTTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC---
T ss_pred hhhcccCccEEEEEEEEEeeCC-----EEEECCCCCCCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCccc
Confidence 7644456789999999999998 999999887666554 568999999999999999999999999999999
Q ss_pred cCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccC-CcchhhhHHHHHhhhHHHHHHHhc----
Q 046715 305 TNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTG-NQGARLLESNFINNTSMVFGLCLR---- 379 (501)
Q Consensus 305 t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~-~~g~~~~E~~~IN~SL~~L~~vi~---- 379 (501)
|.+|..|||||+||+|+|.+.. ...|+|+|||||||||..+++ +.+.+++|+.+||+||++||+||.
T Consensus 275 T~~N~~SSRSH~Ifti~v~~~~--------~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~ 346 (410)
T 1v8k_A 275 TFANSNSSRSHACFQILLRTKG--------RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ 346 (410)
T ss_dssp -----CCCSSEEEEEEEEESSS--------SEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCCCCCCceEEEEEEEEeCC--------cceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhc
Confidence 9999999999999999997541 245899999999999998876 467788999999999999999997
Q ss_pred CCCCcccCcchhhhhchhc-cCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCcccc
Q 046715 380 KPLQKHFQNSLLTRYLRDY-LEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDN 438 (501)
Q Consensus 380 ~~~~vpyRdSkLT~LL~ds-LgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~ 438 (501)
+..||||||||||+||||+ |||||+|+|||||||+..+++||++||+||+||++|...+
T Consensus 347 ~~~hIPYRdSKLTrLLqdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~ 406 (410)
T 1v8k_A 347 NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHH 406 (410)
T ss_dssp ------CCCCHHHHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC---
T ss_pred CCCCCCcccchhHHHHhhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCC
Confidence 5679999999999999999 6999999999999999999999999999999999997644
No 23
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=2.8e-83 Score=657.68 Aligned_cols=309 Identities=29% Similarity=0.413 Sum_probs=250.4
Q ss_pred CCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcC-CceEEecCCccccccccc
Q 046715 75 PSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVND-HNSVTLSPPLALQTSKRI 153 (501)
Q Consensus 75 ~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~v~l~~p~~~~~~~~~ 153 (501)
..++|+|+||+||+...| ...+...|+.+.+ ...+.+..
T Consensus 9 ~~~~i~V~vRvRP~~~~E------------------------------~~~~~~~~~~~~~~~~~~~~~~---------- 48 (344)
T 4a14_A 9 EEAPVRVALRVRPLLPKE------------------------------LLHGHQSCLQVEPGLGRVTLGR---------- 48 (344)
T ss_dssp CCCCCEEEEEECCCCHHH------------------------------HHTTCCBCEEEEGGGTEEEETT----------
T ss_pred cccceEEEEEecccchHH------------------------------HhccCeeEEEEcCCCceEEecc----------
Confidence 369999999999998766 2345677877765 44554422
Q ss_pred cceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccC------CCCCCCchhHHHHHHh
Q 046715 154 KSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGC------PREPGMVPIALKRIFK 227 (501)
Q Consensus 154 ~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~------~~~~GIipr~~~~LF~ 227 (501)
.+.|.||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|. ++++|||||++++||+
T Consensus 49 --~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~ 126 (344)
T 4a14_A 49 --DRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFK 126 (344)
T ss_dssp --TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHH
T ss_pred --cceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHH
Confidence 24699999999999999999999999999999999999999999999999999997 4678999999999999
Q ss_pred hcccccCCCccceEEEEEEEEeeccCCCcceeccCCCC---ccccc-----ccccccCceEEEecCHHHHHHHHHHhhcc
Q 046715 228 GTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDG---VDLCM-----QQSTIKGLQEIIISDAAQAESLIARAMLK 299 (501)
Q Consensus 228 ~~~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~---~~~~~-----~~~~v~~l~~~~v~s~~e~~~ll~~g~~~ 299 (501)
.+++ .....|.|+|||+||||| +|+|||.+. ..+.+ .+.+|.|++++.|.+++|++.+|..|.++
T Consensus 127 ~i~~--~~~~~~~v~vS~~EIYnE-----~i~DLL~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~ 199 (344)
T 4a14_A 127 LIDE--NDLLDCLVHVSYLEVYKE-----EFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAA 199 (344)
T ss_dssp HHHH--CTTSEEEEEEEEEEEETT-----EEEETTSSCCCGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHH
T ss_pred hccc--ccceeeEEEEehhhhhHH-----HHHHHHHhccccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchh
Confidence 9987 456789999999999998 999999643 23333 35689999999999999999999999999
Q ss_pred ccccccCCCCCCCCceeEEEEEEeeeeccCC-----CccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHH
Q 046715 300 RATAMTNSNNQSSRSQCIINLRCAANELSRG-----DGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVF 374 (501)
Q Consensus 300 R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~-----~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L 374 (501)
|++++|.+|..|||||+||+|+|.+...... .......|+|+|||||||||..++++.|.+++|+..||+||++|
T Consensus 200 R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aL 279 (344)
T 4a14_A 200 RHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLAL 279 (344)
T ss_dssp HHC------CCGGGSEEEEEEEEEEEC------------CEEEEEEEEEECCCCCCC--------------CCCSHHHHH
T ss_pred cccCcchhhhcccccceEEEEEeeeCCCCcccCCCccccceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhh
Confidence 9999999999999999999999988653221 11234468999999999999999999999999999999999999
Q ss_pred HHHhc-------CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcc
Q 046715 375 GLCLR-------KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYM 432 (501)
Q Consensus 375 ~~vi~-------~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~ 432 (501)
|+||. +..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|||
T Consensus 280 g~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 280 GNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp HHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred hhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 99997 34699999999999999999999999999999999999999999999999986
No 24
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=1.6e-82 Score=653.41 Aligned_cols=318 Identities=27% Similarity=0.393 Sum_probs=251.4
Q ss_pred CCCCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEc-CCceEEecCCcccccc-
Q 046715 73 SSPSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVN-DHNSVTLSPPLALQTS- 150 (501)
Q Consensus 73 ~~~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~v~l~~p~~~~~~- 150 (501)
.+.+|+|||||||||+...+ ..++..+ +++++.+..+......
T Consensus 19 ~~~~g~IrV~vRvRP~~~~~-----------------------------------~~~~~~~~~~~~v~i~~~~~~~~~~ 63 (358)
T 2nr8_A 19 SGTRKKVHAFVRVKPTDDFA-----------------------------------HEMIRYGDDKRSIDIHLKKDIRRGV 63 (358)
T ss_dssp ----CCEEEEEEECCCSSCC-----------------------------------TTTEEECTTSSEEEEECCCCSSHHH
T ss_pred CCCCCCeEEEEEcCCCCCCc-----------------------------------cceeEECCCCCEEEEecCCcccccc
Confidence 34579999999999986422 1234443 5777877766543211
Q ss_pred -ccccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCC---CCCchhHHHHHH
Q 046715 151 -KRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPRE---PGMVPIALKRIF 226 (501)
Q Consensus 151 -~~~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~---~GIipr~~~~LF 226 (501)
........|.||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|+.++ +|||||++++||
T Consensus 64 ~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF 142 (358)
T 2nr8_A 64 VNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVF 142 (358)
T ss_dssp HTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHH
T ss_pred ccCCCcceEEECCeecC-CcCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHH
Confidence 1122356799999995 89999999999999999999999999999999999999999998764 899999999999
Q ss_pred hhcccccCCCccceEEEEEEEEeeccCCCcceeccCCCCc-------cccc----ccccccCceEEEecCHHHHHHHHHH
Q 046715 227 KGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV-------DLCM----QQSTIKGLQEIIISDAAQAESLIAR 295 (501)
Q Consensus 227 ~~~~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~-------~~~~----~~~~v~~l~~~~v~s~~e~~~ll~~ 295 (501)
+.+++ .....|.|+|||+||||| +|+|||.+.. .+.+ .+.+|+|++++.|.+++|++.+|..
T Consensus 143 ~~i~~--~~~~~~~v~vS~~EIYnE-----~i~DLL~~~~~~~~~~~~l~i~e~~~g~~v~gl~~~~v~s~~e~~~ll~~ 215 (358)
T 2nr8_A 143 RMIEE--RPTHAITVRVSYLEIYNE-----SLFDLLSTLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFE 215 (358)
T ss_dssp HHHHT--CTTSCEEEEEEEEEEETT-----EEEETTSSSTTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHH
T ss_pred HHHhh--cCCceEEEEEEEEEEeCC-----eeeECcCCccccCccCCceEEEECCCceEecCCEEEEcCCHHHHHHHHHH
Confidence 99987 445689999999999998 9999997532 2222 3578999999999999999999999
Q ss_pred hhccccccccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHH
Q 046715 296 AMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFG 375 (501)
Q Consensus 296 g~~~R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~ 375 (501)
|.++|.+++|.+|..|||||+||+|+|.+......+. ....|+|+|||||||||..++++.|.+++|+.+||+||++||
T Consensus 216 g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~-~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg 294 (358)
T 2nr8_A 216 GETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEE-KYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLE 294 (358)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEEEEEEEEC--------CCEEEEEEEEECCCCC----------------CCSTHHHHHH
T ss_pred HHhccccccccCCCCCCcCeEEEEEEEEEEeccCCCC-CEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998765332222 234599999999999999999999999999999999999999
Q ss_pred HHhc-----CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccC
Q 046715 376 LCLR-----KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKI 434 (501)
Q Consensus 376 ~vi~-----~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I 434 (501)
+||. +..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 295 ~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 295 QAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp HHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred HHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9997 3469999999999999999999999999999999999999999999999999986
No 25
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=2.6e-82 Score=648.70 Aligned_cols=304 Identities=24% Similarity=0.343 Sum_probs=243.5
Q ss_pred CCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEc---CCceEEecCCccccccc
Q 046715 75 PSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVN---DHNSVTLSPPLALQTSK 151 (501)
Q Consensus 75 ~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~v~l~~p~~~~~~~ 151 (501)
..++|||+||+||+...| ..+...++... +++.+.+.
T Consensus 20 ~~~~VrV~vRvRP~~~~e-------------------------------~~~~~~~v~~~~~~~~~~~~~~--------- 59 (344)
T 3dc4_A 20 KLSAVRIAVREAPYRQFL-------------------------------GRREPSVVQFPPWSDGKSLIVD--------- 59 (344)
T ss_dssp CCSEEEEEEEECCCC--------------------------------------CCSEECCSSSCSSEEEET---------
T ss_pred CCCCeEEEEECCCCCccc-------------------------------ccCCceEEEecCCCCCceEEec---------
Confidence 468999999999998655 22233344433 24444442
Q ss_pred cccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCC------CCCCCchhHHHHH
Q 046715 152 RIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCP------REPGMVPIALKRI 225 (501)
Q Consensus 152 ~~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~------~~~GIipr~~~~L 225 (501)
.+.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|+. +++|||||++++|
T Consensus 60 ----~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~L 135 (344)
T 3dc4_A 60 ----QNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDI 135 (344)
T ss_dssp ----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHH
T ss_pred ----CcEEEcceEECCCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHH
Confidence 246999999999999999999999999999999999999999999999999999874 5679999999999
Q ss_pred HhhcccccCC-CccceEEEEEEEEeeccCCCcceeccCCCCcccccccccccCceEEEecCHHHHHHHHHHhhccccccc
Q 046715 226 FKGTTKIRSS-ESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLCMQQSTIKGLQEIIISDAAQAESLIARAMLKRATAM 304 (501)
Q Consensus 226 F~~~~~~~~~-~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~ 304 (501)
|+.+...... ...|.|++||+||||| +|+|||.+..........+.|++++.|.+++|++.+|..|.++|++++
T Consensus 136 F~~i~~~~~~~~~~~~v~vS~~EIYnE-----~i~DLL~~~~~~~~~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~ 210 (344)
T 3dc4_A 136 FERVTARQENNKDAIQVYASFIEIYNE-----KPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRP 210 (344)
T ss_dssp HHHHHHSSSSCSSCCEEEEEEEEEESS-----CEEETTSSCTTSBCCSSTTTCSCCEECSSHHHHHHHHHHHHHTCC---
T ss_pred HHHHHhhhhccccceEEEEEEEEEeCC-----eeEEccCCCCCCccccccccCceecccCCHHHHHHHHHHHHhhccccc
Confidence 9998763332 3579999999999998 999999887666666667889999999999999999999999999999
Q ss_pred cCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc----C
Q 046715 305 TNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR----K 380 (501)
Q Consensus 305 t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~----~ 380 (501)
|.+|..|||||+||+|+|.+. ...|+|+|||||||||..++++.|.+++|+.+||+||++||+||. +
T Consensus 211 T~~N~~SSRSH~Ifti~v~~~---------~~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~ 281 (344)
T 3dc4_A 211 TNMNSNSSRSHAIVTIHVKSK---------THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAG 281 (344)
T ss_dssp -------CCEEEEEEEEEECS---------SCEEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCceEEEEEEEEec---------CcEEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhcc
Confidence 999999999999999999642 235899999999999999999999999999999999999999997 6
Q ss_pred CCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCcc
Q 046715 381 PLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKF 436 (501)
Q Consensus 381 ~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~ 436 (501)
..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||++...
T Consensus 282 ~~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTL~fA~ra~~~~~ 337 (344)
T 3dc4_A 282 HTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAAL 337 (344)
T ss_dssp CSSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHHHTT
T ss_pred CCcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhhHHHHHHHHHHHHHHhhcCC
Confidence 78999999999999999999999999999999999999999999999999998764
No 26
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-83 Score=667.52 Aligned_cols=325 Identities=25% Similarity=0.359 Sum_probs=265.6
Q ss_pred CCCCCCCCCCCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEc---C---CceE
Q 046715 66 HKSSSATSSPSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVN---D---HNSV 139 (501)
Q Consensus 66 ~~~~~~~~~~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~---~~~v 139 (501)
+.+++...+.+|+|||||||||+...+.. ....++.+. + ...+
T Consensus 48 r~l~n~~~elkgnIrV~vRvRP~~~~~e~-------------------------------~~~~~~~v~~~~~~~~~~~~ 96 (403)
T 4etp_A 48 RTLHNELQELRGNIRVYLRIRPALKNLEN-------------------------------SDTSLINVNEFDDNSGVQSM 96 (403)
T ss_dssp HHHHHHHHHHHCSEEEEEEECCCCTTTSC-------------------------------SCCTTEEECCCBTTTTBEEE
T ss_pred HHHHHHHHHcCCCeEEEEEeCCCCCcccc-------------------------------cCCCeeEEeeccCCCCceEE
Confidence 45566667778999999999999865311 111112221 1 1223
Q ss_pred EecCCccccccccccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCch
Q 046715 140 TLSPPLALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVP 219 (501)
Q Consensus 140 ~l~~p~~~~~~~~~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIip 219 (501)
.+..+.. ....+.|.||+||+++++|++||+. +.|+|+++++|||+||||||||||||||||+|+ ++||||
T Consensus 97 ~~~~~~~------~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giip 167 (403)
T 4etp_A 97 EVTKIQN------TAQVHEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIP 167 (403)
T ss_dssp EEEECSS------SCEEEEEEESEEECTTCCHHHHHHH-HHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHH
T ss_pred EEecCCC------CcCceEEEcCEEECCCCchHHHHHH-HHHHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCccch
Confidence 3322111 1224569999999999999999998 669999999999999999999999999999996 469999
Q ss_pred hHHHHHHhhcccccCCCccceEEEEEEEEeeccCCCcceeccCCCCc----------cccc------ccccccCceEEEe
Q 046715 220 IALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV----------DLCM------QQSTIKGLQEIII 283 (501)
Q Consensus 220 r~~~~LF~~~~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~----------~~~~------~~~~v~~l~~~~v 283 (501)
|++++||+.+......++.|.|+|||+||||| +|+|||.+.. .+.+ .+.+|.|++++.|
T Consensus 168 r~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE-----~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v 242 (403)
T 4etp_A 168 STISHIFNWINKLKTKGWDYKVNAEFIEIYNE-----NIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKL 242 (403)
T ss_dssp HHHHHHHHHHHHHHTTTEEEEEEEEEEEEETT-----EEEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEEC
T ss_pred hHHHHHHHHHHhhhccCceEEEEEEEEEEecc-----eeeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEe
Confidence 99999999998766677899999999999998 9999997643 1111 2468999999999
Q ss_pred cCHHHHHHHHHHhhccccccccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhH
Q 046715 284 SDAAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLE 363 (501)
Q Consensus 284 ~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E 363 (501)
.+++|++.+|..|.++|++++|.+|..|||||+||+|++.+.....+. ...|+|+|||||||||..++++.|.+++|
T Consensus 243 ~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~---~~~~kL~lVDLAGSEr~~~t~~~g~rl~E 319 (403)
T 4etp_A 243 ESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGA---HSYGTLNLVDLAGSERINVSQVVGDRLRE 319 (403)
T ss_dssp CCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTTCC---EEEEEEEEEECCCCCCCCCSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCCCC---eeEEEEEEEECCCCccccccCChhHHHHH
Confidence 999999999999999999999999999999999999999887644332 23589999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHhc-------CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCcc
Q 046715 364 SNFINNTSMVFGLCLR-------KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKF 436 (501)
Q Consensus 364 ~~~IN~SL~~L~~vi~-------~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~ 436 (501)
+..||+||++||+||. +..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|+++|+.
T Consensus 320 ~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~ 399 (403)
T 4etp_A 320 TQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 399 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC--
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhccc
Confidence 9999999999999997 234999999999999999999999999999999999999999999999999999986
Q ss_pred cc
Q 046715 437 DN 438 (501)
Q Consensus 437 ~~ 438 (501)
.+
T Consensus 400 ~~ 401 (403)
T 4etp_A 400 VS 401 (403)
T ss_dssp --
T ss_pred CC
Confidence 43
No 27
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=1.1e-82 Score=665.22 Aligned_cols=328 Identities=26% Similarity=0.356 Sum_probs=265.5
Q ss_pred CCCCCCCCCCCCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCC
Q 046715 65 QHKSSSATSSPSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPP 144 (501)
Q Consensus 65 ~~~~~~~~~~~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p 144 (501)
++.+++...+.+|+|+|||||||+...| .......+...++.+|.+..+
T Consensus 47 rr~l~n~~~~l~gnIrV~vRvRP~~~~E-------------------------------~~~~~~~~~~~~~~~v~~~~~ 95 (412)
T 3u06_A 47 RKELHNTVMDLRDNIRVFCRIRPPLESE-------------------------------ENRMCCTWTYHDESTVELQSI 95 (412)
T ss_dssp HHHHHHHHHHHTCSEEEEEEECCCCGGG-------------------------------TTSCBCEEEEEETTEEEEECC
T ss_pred HHHHHHHHHHhCCCEEEEEEcCCCCchh-------------------------------ccCcceEEEecCCCEEEEecC
Confidence 3456666777889999999999998765 111222334456677777654
Q ss_pred ccccccccccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHH
Q 046715 145 LALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKR 224 (501)
Q Consensus 145 ~~~~~~~~~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~ 224 (501)
...... ......|.||+||+++++|++||+. +.|+|+++|+|||+||||||||||||||||+|.++++|||||++++
T Consensus 96 ~~~~~~--~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~ 172 (412)
T 3u06_A 96 DAQAKS--KMGQQIFSFDQVFHPLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDL 172 (412)
T ss_dssp C---------CCCEEECSEEECTTCCHHHHHTT-THHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHH
T ss_pred Cccccc--ccCceEEeeCeEcCCCCCHHHHHHH-HHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHH
Confidence 332211 1123569999999999999999985 7799999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCCCccceEEEEEEEEeeccCCCcceeccCCCCc-ccc-------cccccccCceEEEecCHHHHHHHHHHh
Q 046715 225 IFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGV-DLC-------MQQSTIKGLQEIIISDAAQAESLIARA 296 (501)
Q Consensus 225 LF~~~~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~-~~~-------~~~~~v~~l~~~~v~s~~e~~~ll~~g 296 (501)
||+.+......+..|.|+|||+||||| .|+|||.+.. .+. ..+.+|.|++++.|.+++|++.+|..|
T Consensus 173 lF~~i~~~~~~~~~~~v~vS~~EIYnE-----~i~DLL~~~~~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g 247 (412)
T 3u06_A 173 LFDSIRGYRNLGWEYEIKATFLEIYNE-----VLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTA 247 (412)
T ss_dssp HHHHHHHHGGGTEEEEEEEEEEEEETT-----EEEETTCCSCCCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHH
T ss_pred HHHhhhhhcccCceEEEEEEEEEEeCC-----eeEEcCCCCCCCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHH
Confidence 999998766667899999999999998 9999996543 222 235789999999999999999999999
Q ss_pred hccccccccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHH
Q 046715 297 MLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGL 376 (501)
Q Consensus 297 ~~~R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~ 376 (501)
.++|++++|.+|..|||||+||+|++.+...... ....|+|+|||||||||.. .+.+++|+.+||+||++||+
T Consensus 248 ~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~---~~~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~ 320 (412)
T 3u06_A 248 KMNRATASTAGNERSSRSHAVTKLELIGRHAEKQ---EISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTN 320 (412)
T ss_dssp HHHCC-----CHHHHTTCEEEEEEEEEEEETTTT---EEEEEEEEEEECCCCCC--------------CTTTHHHHHHHH
T ss_pred HhcccccccCCCCCCcCceEEEEEEEEEEeCCCC---CEEEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHH
Confidence 9999999999999999999999999987664332 2345899999999999874 46799999999999999999
Q ss_pred Hhc----CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCcccc
Q 046715 377 CLR----KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDN 438 (501)
Q Consensus 377 vi~----~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~ 438 (501)
||. +..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|++.|+..+
T Consensus 321 vI~aL~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~ 386 (412)
T 3u06_A 321 VILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTK 386 (412)
T ss_dssp HHHHHHTTCSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHhccCCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhccccc
Confidence 997 67899999999999999999999999999999999999999999999999999998543
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=1.3e-75 Score=655.83 Aligned_cols=285 Identities=27% Similarity=0.391 Sum_probs=233.6
Q ss_pred CceEEecCCccccccccccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCC
Q 046715 136 HNSVTLSPPLALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREP 215 (501)
Q Consensus 136 ~~~v~l~~p~~~~~~~~~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~ 215 (501)
.++|++.++.. .....+.|.||+||+++++|++||+. +.|+|+++++|||+||||||||||||||||+|+ ++
T Consensus 414 ~~~~~~~~~~~-----~~~~~~~f~fd~vf~~~~~q~~v~~~-~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~ 485 (715)
T 4h1g_A 414 KQELVITRNIN-----NNFSNLRFLFDKIFEREQSNDLVFEE-LSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TN 485 (715)
T ss_dssp -CEEEEEEEET-----TEEEEEEEECSEEECSSCCHHHHGGG-THHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TT
T ss_pred CCeEEEcCCCC-----CCCCCeEEEeceEeCCCCCHHHHHHH-HHHHHHHHhCCceEEEEccCCCCCchhhccCCC--CC
Confidence 55666665432 22345679999999999999999987 579999999999999999999999999999994 57
Q ss_pred CCchhHHHHHHhhcccccCCCccceEEEEEEEEeeccCCCcceeccCCCCcc----ccc------ccccccCceEEEecC
Q 046715 216 GMVPIALKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVD----LCM------QQSTIKGLQEIIISD 285 (501)
Q Consensus 216 GIipr~~~~LF~~~~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~----~~~------~~~~v~~l~~~~v~s 285 (501)
|||||++++||+.++..+..+..|.|+|||+||||| +|+|||.+... +.+ .+.+|+||+++.|.|
T Consensus 486 Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne-----~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~ 560 (715)
T 4h1g_A 486 GMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNE-----AIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKS 560 (715)
T ss_dssp SHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETT-----EEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSC
T ss_pred CcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECC-----EEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCC
Confidence 999999999999998766677889999999999998 99999976422 222 236899999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHH
Q 046715 286 AAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESN 365 (501)
Q Consensus 286 ~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~ 365 (501)
.+|++.+|..|.++|++++|.+|..|||||+||+|+|.+...... ....|+|+|||||||||..++++.|.+++|+.
T Consensus 561 ~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~~~---~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~ 637 (715)
T 4h1g_A 561 PEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTK---ESSYGTLNLIDLAGSERLNNSRAEGDRLKETQ 637 (715)
T ss_dssp HHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETTTC---CEEEEEEEEEECCCCCC---------CHHHHH
T ss_pred HHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecCCC---CEeEEEEEEEeCCCcccccccCChhHHHHHHH
Confidence 999999999999999999999999999999999999988764333 23468999999999999999999999999999
Q ss_pred HHhhhHHHHHHHhc-----CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCcc
Q 046715 366 FINNTSMVFGLCLR-----KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKF 436 (501)
Q Consensus 366 ~IN~SL~~L~~vi~-----~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~ 436 (501)
.||+||++|++||. +..|||||||||||||||+|||||+|+|||||||+..+++||++||+||+|||+||.
T Consensus 638 ~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~~ 713 (715)
T 4h1g_A 638 AINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTRI 713 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEEEEEECCChhhHHHHHHHHHHHHHhcccee
Confidence 99999999999997 467999999999999999999999999999999999999999999999999999983
No 29
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.4e-27 Score=227.45 Aligned_cols=222 Identities=12% Similarity=0.079 Sum_probs=152.4
Q ss_pred eeecccccCCCCCchh--HHHHhhhhhHHHHHhc-CCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhccc-c
Q 046715 157 VYQGFSYVFSADSSQG--EVYEKMVNPLVEDFLK-GKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTK-I 232 (501)
Q Consensus 157 ~~f~FD~Vf~~~~sQ~--evf~~~v~plv~~~l~-G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~-~ 232 (501)
+.|.||+||++++.|+ +||++ +.++|+++++ |||+||||||||||||| ||++..+|..... .
T Consensus 57 k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scLd~GyNvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~~ 122 (298)
T 2o0a_A 57 HVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCLNQKKNFNLISLSTTPHGSL-------------RESLIKFLAEKDTIY 122 (298)
T ss_dssp CEEECSEEEETTTSCHHHHHHHT-THHHHHHHHHTTCCEEEEEECSSCCHHH-------------HHHHHHHHHSTTSHH
T ss_pred ceEEeeeEECccccccHHHHHHH-HHHHHHHHHhCCCceEEEEECCCCCCcc-------------HHHHHHHHHHhhhhc
Confidence 3589999999999999 99999 9999999999 99999999999999999 9999999986654 2
Q ss_pred cCCCccceEEEEEEEEe-eccCCCcceeccCCCCcc---ccc-----ccccccCceEEEecC-HHHHHHHHHHhhccccc
Q 046715 233 RSSESTRSFYLSIFEIY-SERGKGEKLLDLLPDGVD---LCM-----QQSTIKGLQEIIISD-AAQAESLIARAMLKRAT 302 (501)
Q Consensus 233 ~~~~~~~~v~vS~~EIy-nE~~~~e~i~DLL~~~~~---~~~-----~~~~v~~l~~~~v~s-~~e~~~ll~~g~~~R~~ 302 (501)
. +.|.+.+||+||| || .++|||....+ +.+ ....+.|++.+.|.+ .+|+..++..+..-
T Consensus 123 ~---~~Y~~tlq~veLy~Ne-----~~~DLL~~~~~~~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~--- 191 (298)
T 2o0a_A 123 Q---KQYVITLQFVFLSDDE-----FSQDMLLDYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEHP--- 191 (298)
T ss_dssp H---HHEEEEEEEEEEECC------CEEETTSCCC------CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC------
T ss_pred c---cceEEEEEEEEEecCC-----chHHhcCCCCCCCcceEEecCCCCEEecccEEEEccccHHHHHHHhhccccc---
Confidence 2 7899999999999 88 99999953222 222 235788999999999 99988887322111
Q ss_pred cccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhcCCC
Q 046715 303 AMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLRKPL 382 (501)
Q Consensus 303 ~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~~~ 382 (501)
..|. +.-.|+.+++...+...+++.....--++|+.+.-.. +...|.+.+...
T Consensus 192 ---~~~~---~gi~i~k~~~~~~~~~~~~~~~~~~~d~yf~e~~~~~--------------------~~~~l~~~~~~~- 244 (298)
T 2o0a_A 192 ---NLPH---SGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELNNLK--------------------SIEQFDKSIFKK- 244 (298)
T ss_dssp ----------CEEEEEEEEEEESCC-------CCCEEEEEEEECSHH--------------------HHHHHHHHHHTC-
T ss_pred ---ccCC---CCceEEEEEEecCcccccccCCCCceEEEEEEeCCHH--------------------HHHHHHhhcccc-
Confidence 1111 2345666666543222222211112347787764432 122333333322
Q ss_pred CcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccc
Q 046715 383 QKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFD 437 (501)
Q Consensus 383 ~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~ 437 (501)
.+-.|+++-+|+.-|- ..+-++++++..+. +.-..|..++++++++|.
T Consensus 245 --~~~~spi~~il~~ll~-~tks~~~~~l~~~~----~~~~lL~~s~~i~~~~~~ 292 (298)
T 2o0a_A 245 --ESCETPIALVLKKLIS-DTKSFFLLNLNDSK----NVNKLLTISEEVQTQLCK 292 (298)
T ss_dssp ---CCCSHHHHHHHHHHH-HSBCEEEEEECCGG----GHHHHHHHHHHHHHHTC-
T ss_pred --cccCCcHHHHHHHHHh-cCcceEEEEecCCC----chhHHHHHHHHhhcccCc
Confidence 3556888888887776 56889999997643 233478889888888874
No 30
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.93 E-value=5e-27 Score=196.96 Aligned_cols=79 Identities=20% Similarity=0.224 Sum_probs=74.7
Q ss_pred HHHhhhHHHHHHHhc-----CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccc
Q 046715 365 NFINNTSMVFGLCLR-----KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNV 439 (501)
Q Consensus 365 ~~IN~SL~~L~~vi~-----~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v 439 (501)
.+||+||++||+||. +..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|+++|++.++
T Consensus 2 ~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~ 81 (100)
T 2kin_B 2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 81 (100)
T ss_dssp CBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEEC
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcce
Confidence 579999999999997 368999999999999999999999999999999999999999999999999999999998
Q ss_pred cCch
Q 046715 440 EDSS 443 (501)
Q Consensus 440 ~~~~ 443 (501)
+|.+
T Consensus 82 ~n~~ 85 (100)
T 2kin_B 82 VNLE 85 (100)
T ss_dssp CEEE
T ss_pred eccC
Confidence 8754
No 31
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.92 E-value=1.8e-25 Score=193.74 Aligned_cols=76 Identities=20% Similarity=0.210 Sum_probs=72.2
Q ss_pred hhhHHHHHHHhc-----CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCc
Q 046715 368 NNTSMVFGLCLR-----KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDS 442 (501)
Q Consensus 368 N~SL~~L~~vi~-----~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~ 442 (501)
|+||++||+||. ...||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||++|+|.+++|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 789999999997 357999999999999999999999999999999999999999999999999999999988875
Q ss_pred h
Q 046715 443 S 443 (501)
Q Consensus 443 ~ 443 (501)
+
T Consensus 81 ~ 81 (117)
T 3kin_B 81 E 81 (117)
T ss_dssp C
T ss_pred c
Confidence 5
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.23 E-value=0.0054 Score=55.48 Aligned_cols=49 Identities=22% Similarity=0.317 Sum_probs=36.8
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
++||.....+..|+++++. +..+++++-......++-||++|+|||+.+
T Consensus 7 ~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 7 ANLDTYHPKNVSQNRALLT-IRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp CCSSSCCCCSHHHHHHHHH-HHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CccccccCCCHHHHHHHHH-HHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 5788877666678888876 666776654333456788999999999988
No 33
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.10 E-value=0.021 Score=52.40 Aligned_cols=49 Identities=24% Similarity=0.221 Sum_probs=34.0
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCC-CeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGK-SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~-n~tI~aYGqTgSGKTyTm 208 (501)
++||.....+..+.++++. +..++...-.+. +..|+-||++|+|||+.+
T Consensus 22 ~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 22 ASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred CCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 4688766555567777775 455555443332 267889999999999987
No 34
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.75 E-value=0.046 Score=54.35 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=33.2
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
++||.+...+..+..+++. +..+++..-.+....|+-||++|+||||.+.
T Consensus 121 ~tfd~f~~~~~~~~~~~~~-~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSA-ILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHH-HHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred CCHhhCcCCChHHHHHHHH-HHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 4677654433355666663 5556655444445678889999999999983
No 35
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.62 E-value=0.19 Score=44.28 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=22.6
Q ss_pred hhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++.+..+....++-||++|+|||+.+
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 334455555566677899999999999988
No 36
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.67 E-value=0.31 Score=44.96 Aligned_cols=45 Identities=22% Similarity=0.359 Sum_probs=27.6
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
++||.++.. ..++++++. +..++ ..+....++-||++|+|||+.+
T Consensus 25 ~~~~~~~~~-~~~~~~~~~-l~~~~---~~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGA-LKSAA---SGDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSTTTSCC---CCHHHHHH-HHHHH---HTCSCSEEEEECSTTSSHHHHH
T ss_pred CChhhccCC-CCCHHHHHH-HHHHH---hCCCCCeEEEECCCCCCHHHHH
Confidence 467766652 233444443 22222 2335677899999999999987
No 37
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=87.60 E-value=0.25 Score=47.16 Aligned_cols=49 Identities=24% Similarity=0.289 Sum_probs=31.4
Q ss_pred ecccccCCCCCchhHHHHhhhhhH-----HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPL-----VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~pl-----v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+.|+.+.+.+...+.+.+. +..+ ...+-......|+-||++|+|||+.+
T Consensus 8 ~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 5789999877666665543 3221 11111122345899999999999987
No 38
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.70 E-value=0.22 Score=43.90 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=27.9
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|+.+++. ++. +..+++.+..+....++-||++|+|||+.+
T Consensus 20 ~~~~~~g~----~~~----~~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 20 KLDPVIGR----DTE----IRRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp CSCCCCSC----HHH----HHHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred ccchhhcc----hHH----HHHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 46666643 322 334455555566778899999999999987
No 39
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.58 E-value=0.24 Score=48.54 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=25.1
Q ss_pred hHHHHhhhhhHHHHHhc--CC--CeEEEeccCCCCCccccc
Q 046715 172 GEVYEKMVNPLVEDFLK--GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 172 ~evf~~~v~plv~~~l~--G~--n~tI~aYGqTgSGKTyTm 208 (501)
..+.+.++..++...+. |. ...|+-||++|+|||+..
T Consensus 13 ~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 13 PAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 44555556666666553 22 236788999999999976
No 40
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.14 E-value=0.24 Score=47.32 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=21.8
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
|+||.+.+.+..-..+.+ .+..+.. .+..|+-||++|+|||+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~-----~~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLE-----QVSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp -------CCCHHHHHHHH-----HHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred cccccceeCCHHHHHHHH-----HHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 578888764433333322 2233332 3456888999999999876
No 41
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=85.77 E-value=0.32 Score=47.75 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=31.4
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHH-Hh----cCCCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVED-FL----KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~-~l----~G~n~tI~aYGqTgSGKTyTm 208 (501)
..||.|.+.+..-+++.+.+..++... .+ -.....|+-||++|+|||+.+
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 478888876555455555443332111 11 123457899999999999876
No 42
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=85.71 E-value=0.32 Score=46.75 Aligned_cols=50 Identities=22% Similarity=0.235 Sum_probs=31.1
Q ss_pred ecccccCCCCCchhHHHHhhhhhHH-----HHHhcCCCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLV-----EDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv-----~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+.||.+.+.+..-+.+.+.+..++. ...--.....|+-||++|+|||+.+
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 6799988765544445444333221 1111134456899999999999877
No 43
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=85.31 E-value=0.3 Score=48.79 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=19.7
Q ss_pred hcCCCeEEEeccCCCCCccccc
Q 046715 187 LKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 187 l~G~n~tI~aYGqTgSGKTyTm 208 (501)
-.|...+++.||++|+|||.++
T Consensus 41 ~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 41 MSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HTTCCCEEEEECCCSHHHHHHH
T ss_pred cCCCCCeEEEECCCCCCHHHHH
Confidence 3678889999999999999987
No 44
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=85.30 E-value=0.4 Score=42.09 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=14.8
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..++-||++|+|||+.+
T Consensus 37 ~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp SEEEEESSSTTTTCHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45677999999999998
No 45
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.27 E-value=0.33 Score=45.97 Aligned_cols=49 Identities=29% Similarity=0.331 Sum_probs=27.9
Q ss_pred ecccccCCCCCchhHHHHhhhhhHH-HHHhcCC----CeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLV-EDFLKGK----SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv-~~~l~G~----n~tI~aYGqTgSGKTyTm 208 (501)
++||.+.+.+....++-+- ...+- ..++.+. ...++-||++|+|||+.+
T Consensus 13 ~~~~~i~g~~~~~~~l~~l-~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHH-HHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHH-HHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 5789888765433333222 11110 0122221 223899999999999987
No 46
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=84.78 E-value=0.45 Score=45.59 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=18.4
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
......++-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 556778999999999999987
No 47
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=84.77 E-value=3.5 Score=40.72 Aligned_cols=204 Identities=14% Similarity=0.114 Sum_probs=110.6
Q ss_pred eeecccccCCCCC--chhHHHHhhhhhHHHHHh-cCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhccccc
Q 046715 157 VYQGFSYVFSADS--SQGEVYEKMVNPLVEDFL-KGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIR 233 (501)
Q Consensus 157 ~~f~FD~Vf~~~~--sQ~evf~~~v~plv~~~l-~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~~ 233 (501)
..|.|++|++.+. .++-+|++ .+..++.++ .+.|+.||..|..- + + ..-..|+..+..
T Consensus 92 ~~y~FnRiIp~~~~~e~~~l~qE-~q~y~DmcL~~~~NfslIsis~~~------------w-~---~Lr~~lL~fi~~-- 152 (333)
T 4etp_B 92 HVYKFNRVIPHLKVSEDCFFTQE-YSVYHDMALNQKKNFNLISLSTTP------------H-G---SLRESLIKFLAE-- 152 (333)
T ss_dssp CEEECSEEEETTTCCHHHHHHHT-THHHHHHHHHTTCCEEEEEEESSC------------C-C---HHHHHHHHHHHS--
T ss_pred ceEEEeeeechhhcchHHHHHHH-HHHHHHHHHccCCCeeEEEecCCC------------c-H---HHHHHHHHHHHh--
Confidence 4589999998775 45555555 999999999 89999999998741 1 1 123333333333
Q ss_pred CC----CccceEEEEEEEEeeccCCCcceeccCCCCcc-------cccccccc-cCceEEEecCHHHHHHHHHHhhcccc
Q 046715 234 SS----ESTRSFYLSIFEIYSERGKGEKLLDLLPDGVD-------LCMQQSTI-KGLQEIIISDAAQAESLIARAMLKRA 301 (501)
Q Consensus 234 ~~----~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~-------~~~~~~~v-~~l~~~~v~s~~e~~~ll~~g~~~R~ 301 (501)
. ...|.+.+.|+.+-++ .-..|||....+ +.+.+..| -+-..+.+.+..+.+.++...
T Consensus 153 -k~~~Y~~~y~i~lQ~V~Lse~----~~S~DlL~~~~~~~~~~I~lkiee~sI~ldS~~i~i~~~~~~l~~~~kl----- 222 (333)
T 4etp_B 153 -KDTIYQKQYVITLQFVFLSDD----EFSQDMLLDYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSA----- 222 (333)
T ss_dssp -TTCHHHHHEEEEEEEEECCSS----SCCEESSCC----------CEEETTEEECCSCCEEESSGGGGSCTTSSC-----
T ss_pred -cccccccceEEEEEEEEEcCC----CchhhhhccccccCCCCceEEeecceEeecceEEEeccccccchhhhcc-----
Confidence 2 3567889999877764 236999965421 11222211 234455666554322222100
Q ss_pred ccccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhcCC
Q 046715 302 TAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLRKP 381 (501)
Q Consensus 302 ~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~~ 381 (501)
.+. ...-...-.|+.+.+....-..+++.....-..+||.+-+.. ....|.+++...
T Consensus 223 --~~~-~~~~~~GI~IlKfqf~~~~~~~~~n~~~~~~~fYFiEi~~~~--------------------ti~~l~~~i~~~ 279 (333)
T 4etp_B 223 --DEH-PNLPHSGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELNNLK--------------------SIEQFDKSIFKK 279 (333)
T ss_dssp --CC---------CEEEEEEEEECC--------CCCEEEEEEEECSHH--------------------HHHHHHSCC---
T ss_pred --ccC-CCCCCCCceEEEEEEEecCcccccccCCcceeEEEEEecChh--------------------HHHHHHhhcCcc
Confidence 000 000112334566666543322222222223458899876643 344566666533
Q ss_pred CCcccCcchhhhhchhccCCCceEEEEeecCCCCC
Q 046715 382 LQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEE 416 (501)
Q Consensus 382 ~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~ 416 (501)
. .-.|+++-+|+--|. ..+.++|+++.-...
T Consensus 280 ~---~~~spi~~ilkkLl~-~TKS~flfnl~~~~~ 310 (333)
T 4etp_B 280 E---SAETPIALVLKKLIS-DTKSFFLLNLNDSKN 310 (333)
T ss_dssp ----CCCCHHHHHHHHHHH-HSBCEEEEEECCSTT
T ss_pred c---ccCCCHHHHHHHHHh-hCcceEEEEcCCcch
Confidence 2 345778888877665 568899999977654
No 48
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=84.47 E-value=0.46 Score=46.82 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=29.1
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
|+||.... ...+...+.. +..+++.-- +....++-||++|+|||+.+
T Consensus 8 ~~f~~fv~-g~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 8 YTLENFIV-GEGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CCSSSCCC-CTTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHH
T ss_pred CCcccCCC-CCcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHH
Confidence 67888753 2234445544 344443311 12346889999999999988
No 49
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=84.00 E-value=0.3 Score=48.31 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=27.9
Q ss_pred eecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 158 YQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 158 ~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|.|+.+++.+ .+... +...++.+...-|+-||++|+|||+..
T Consensus 20 ~~~f~~i~G~~----~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 20 VFPFSAIVGQE----DMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCGGGSCSCH----HHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCchhccChH----HHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 36899988643 33322 222333333445999999999999877
No 50
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=83.36 E-value=0.38 Score=46.56 Aligned_cols=50 Identities=22% Similarity=0.380 Sum_probs=31.4
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHH-HHhc---CCCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVE-DFLK---GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~-~~l~---G~n~tI~aYGqTgSGKTyTm 208 (501)
..||.+.+.+..-+.+.+.+..++.. ..+. .....|+-||++|+|||+.+
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 46888887654444444444333321 1122 23567899999999999877
No 51
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=83.24 E-value=0.4 Score=47.74 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=25.6
Q ss_pred CchhHHHHhhhhhHHHHHh-cCCCeEEEeccCCCCCccccc
Q 046715 169 SSQGEVYEKMVNPLVEDFL-KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 169 ~sQ~evf~~~v~plv~~~l-~G~n~tI~aYGqTgSGKTyTm 208 (501)
..+++..+. +...+..++ .+....++-||++|+|||+.+
T Consensus 22 ~gr~~~~~~-l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 22 PHREAELRR-LAEVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TTCHHHHHH-HHHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CCHHHHHHH-HHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 345555555 333334444 345567999999999999987
No 52
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=82.87 E-value=0.36 Score=48.62 Aligned_cols=50 Identities=22% Similarity=0.363 Sum_probs=30.7
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHH----hcCCCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDF----LKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~----l~G~n~tI~aYGqTgSGKTyTm 208 (501)
..||.+.+.+..-+.+.+.+..++...- +.+....|+-||++|+|||+..
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 3688887754443444444333322111 2345667999999999999887
No 53
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=81.90 E-value=0.55 Score=43.24 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=18.4
Q ss_pred HHHHhcCCCeEEEeccCCCCCcccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHT 207 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyT 207 (501)
+..+++|.| ++..++||||||.+
T Consensus 45 i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 45 IMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 445667876 67889999999987
No 54
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=81.59 E-value=0.59 Score=45.03 Aligned_cols=49 Identities=29% Similarity=0.331 Sum_probs=27.8
Q ss_pred ecccccCCCCCchhHHHHhhhhhHH-HHHhcCC----CeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLV-EDFLKGK----SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv-~~~l~G~----n~tI~aYGqTgSGKTyTm 208 (501)
++||.+.+.+....++-+- +..+- ..++.+. ...|+-||++|+|||+.+
T Consensus 37 ~~~~~i~g~~~~~~~l~~l-~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHH-HHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHH-HHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 5788888765433333222 11110 0122221 223899999999999987
No 55
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=81.57 E-value=0.62 Score=42.22 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=17.8
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|.| ++..++||||||.+.
T Consensus 34 i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 34 IPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHccCCC--EEEECCCCCchHHHH
Confidence 344567766 577889999999754
No 56
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=81.47 E-value=0.56 Score=42.46 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=17.6
Q ss_pred HHHhcCCCeEEEeccCCCCCccccc
Q 046715 184 EDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 184 ~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
..+++|.| ++..++||||||.+.
T Consensus 33 ~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 33 PLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHcCCCC--EEEECCCCChHHHHH
Confidence 44567776 567789999999873
No 57
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=81.43 E-value=0.49 Score=47.02 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=32.3
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHH-HHhcCC---CeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVE-DFLKGK---SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~-~~l~G~---n~tI~aYGqTgSGKTyTm 208 (501)
..||.|.+.+.--+.+.+.+..|+-. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 36888887655445555544444332 334442 246889999999999876
No 58
>4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A
Probab=80.51 E-value=6.5 Score=38.08 Aligned_cols=215 Identities=13% Similarity=0.114 Sum_probs=110.1
Q ss_pred eeecccccCCCC-CchhHHHHhhhhhHHHHHh-cCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcccccC
Q 046715 157 VYQGFSYVFSAD-SSQGEVYEKMVNPLVEDFL-KGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRS 234 (501)
Q Consensus 157 ~~f~FD~Vf~~~-~sQ~evf~~~v~plv~~~l-~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~~~ 234 (501)
..|.|++|.+.. .+-+++|..-.+...+.++ ++.|+.||+.++.- .+-|--..++.+...-
T Consensus 46 ~~y~F~RiIp~~~~~e~~ll~qE~~~Y~DmCL~k~~NfnlISiS~~~------------~~~lr~~ll~f~~~~y----- 108 (275)
T 4gkp_A 46 KTYKFTKLIQNFSHQNKDLFKEDLHVYIDFCLKRRENFNLFSVGSSN------------IPNTFEKLLAFFKNNY----- 108 (275)
T ss_dssp EEEECSEEEEECSSSCCCGGGTHHHHHHHHHHHTTCCEEEEEECCSS------------CCSHHHHHHHHHHHHT-----
T ss_pred cEEEEEeeeccccCCHHHHHHHHHHHHHHHHhccCCCceEEEecCCC------------cHHHHHHHHHHHHHhc-----
Confidence 458899998654 3445555555899999998 78999999998742 3344445555555532
Q ss_pred CCccceEEEEEEEEeeccCCCcceeccCCCCcc--------cccccccc-cCceEEEecCHHHHHHHHHHhhcccccccc
Q 046715 235 SESTRSFYLSIFEIYSERGKGEKLLDLLPDGVD--------LCMQQSTI-KGLQEIIISDAAQAESLIARAMLKRATAMT 305 (501)
Q Consensus 235 ~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~--------~~~~~~~v-~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t 305 (501)
...|.+.+.++-+-.+ .-=.|||....+ +.+.+..| -+-+.+.+.+..+...+. -.
T Consensus 109 -~~~y~itlQ~V~Ls~~----~~S~Dll~~~~~~~~d~eI~Lk~e~~sI~ldS~~i~i~~~~~~~~~~----------~~ 173 (275)
T 4gkp_A 109 -FDKFVITLQYVMLSDN----ADSQDLLSNNKDGGKDVEIKLKIEESTISLGSTLITLDEITDKLQIK----------KK 173 (275)
T ss_dssp -TTTEEEEEEEEEEC--------CEETTCC----------CEEECSSCEEECSCCEEGGGCCSCC--C----------CS
T ss_pred -cccceEEEEEEEecCC----CcccccccCCccccCCcceeEEeecceeeecceEEEeccCccccchh----------hh
Confidence 3356777777766543 233687733221 11111111 012223333222111111 00
Q ss_pred CCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhcCCCCcc
Q 046715 306 NSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLRKPLQKH 385 (501)
Q Consensus 306 ~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~~~~vp 385 (501)
.-+......-.|+.+++.... .... ..-.++||.+-+.. ....|.+++.....
T Consensus 174 ~~~~~~~~Gi~IlKfq~~~~~--~~e~---~pidfYFiei~~~~--------------------t~~~L~~~~s~~~~-- 226 (275)
T 4gkp_A 174 YSQLNHQNGIGLSKFQFFCLQ--DIEP---IPIDFYFIEIYQPS--------------------IYPILKRSTGTESN-- 226 (275)
T ss_dssp CC-----CCEEEEEEEEEETT--CSSC---CCEEEEEEEECCGG--------------------GHHHHHHC--------
T ss_pred ccCCCCCCCceEEEEEEEecc--CCCC---CceeEEEEEecCHH--------------------HHHHHHhccCCCCC--
Confidence 011111222335455443221 1111 11247888876653 23344555443222
Q ss_pred cCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCcc
Q 046715 386 FQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKF 436 (501)
Q Consensus 386 yRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~ 436 (501)
-.|.++-+|+--|. ..+-+++.++... ++.-..|..+.++.+++|
T Consensus 227 -~~spi~~iLk~LL~-~TKS~flfni~~~----~n~~~lL~ls~~l~~~~~ 271 (275)
T 4gkp_A 227 -LNSPLEIVLKKIFH-DTKSAFVFQIDHS----AEVYDILKLSSHLSFIRN 271 (275)
T ss_dssp ---CHHHHHHHHHHH-HSBCCEEEEESSC----TTHHHHHHHHHHHTTCCC
T ss_pred -CCCcHHHHHHHHHh-cCcceEEEEccCc----chHHHHHHHHHHhccccC
Confidence 22788888877665 6788999999754 233367888888888886
No 59
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=80.34 E-value=0.69 Score=41.64 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=16.6
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+....++-||++|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 343334999999999999987
No 60
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.30 E-value=0.72 Score=48.03 Aligned_cols=50 Identities=32% Similarity=0.395 Sum_probs=36.5
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHH-HHhc--CC--CeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVE-DFLK--GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~-~~l~--G~--n~tI~aYGqTgSGKTyTm 208 (501)
-+||.|-+.+.--+++.+.++.|+.. ..+. |. .-.|+-||+.|+|||++.
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence 36899998877667777777777653 2332 32 456899999999999876
No 61
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=79.76 E-value=11 Score=37.37 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=14.0
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|...|.+|||||..+
T Consensus 36 ~I~vvG~~~sGKSSLl 51 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVL 51 (360)
T ss_dssp EEEEECBTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 6778899999999876
No 62
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=79.53 E-value=0.47 Score=44.50 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=19.2
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+..+++|.| ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3445667877 677999999999774
No 63
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=79.43 E-value=0.5 Score=44.79 Aligned_cols=49 Identities=31% Similarity=0.356 Sum_probs=28.7
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHH-HHhc----CCCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVE-DFLK----GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~-~~l~----G~n~tI~aYGqTgSGKTyTm 208 (501)
+.||.+.+.+..-+++.+. +..+.. ..+. .....|+-||++|+|||+.+
T Consensus 9 ~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAEL-VEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHH-HHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCHHHhcCcHHHHHHHHHH-HHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 5789888765444444332 222111 0111 23446899999999999887
No 64
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=79.23 E-value=0.78 Score=47.55 Aligned_cols=27 Identities=33% Similarity=0.663 Sum_probs=21.5
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
++..++..-...|...|+||||||.||
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 455555555678899999999999998
No 65
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.85 E-value=0.96 Score=44.86 Aligned_cols=41 Identities=37% Similarity=0.468 Sum_probs=26.2
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|+.+++ |+++.+. +-..+-.|.-..++-||+.|+|||+++
T Consensus 23 ~~~~~~g----~~~~~~~----L~~~i~~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 23 TLDEVYG----QNEVITT----VRKFVDEGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp SGGGCCS----CHHHHHH----HHHHHHTTCCCCEEEECSSSSSHHHHH
T ss_pred cHHHhcC----cHHHHHH----HHHHHhcCCCceEEEECCCCCCHHHHH
Confidence 4777775 4554443 333333453223788999999999988
No 66
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=78.82 E-value=0.94 Score=47.07 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=27.8
Q ss_pred eecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 158 YQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 158 ~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|+||.... ..++...+.. +..+.+. .|....++-||++|+|||+.+
T Consensus 101 ~~tfd~fv~-g~~n~~a~~~-~~~~a~~--~~~~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 101 DYTFENFVV-GPGNSFAYHA-ALEVAKH--PGRYNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp TCSGGGCCC-CTTTHHHHHH-HHHHHHS--TTSSCCEEEECSSSSSHHHHH
T ss_pred CCChhhcCC-CCchHHHHHH-HHHHHhC--CCCCCeEEEECCCCCCHHHHH
Confidence 368887542 2233334433 3333332 231346889999999999988
No 67
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=78.72 E-value=1.4 Score=43.89 Aligned_cols=38 Identities=24% Similarity=0.456 Sum_probs=25.9
Q ss_pred chhHHHHhhhhhHHHHHhcCCC-e--EEEeccCCCCCccccc
Q 046715 170 SQGEVYEKMVNPLVEDFLKGKS-G--MLAALGPSGSGKTHTI 208 (501)
Q Consensus 170 sQ~evf~~~v~plv~~~l~G~n-~--tI~aYGqTgSGKTyTm 208 (501)
.+++..+. +...+..++.|.. . +++-||++|+|||+++
T Consensus 21 gr~~~~~~-l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 21 HREQQLQQ-LDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TCHHHHHH-HHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred ChHHHHHH-HHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 34555555 4445555555543 4 7899999999999987
No 68
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=78.71 E-value=0.84 Score=45.47 Aligned_cols=45 Identities=22% Similarity=0.221 Sum_probs=30.9
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCCe--EEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSG--MLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~--tI~aYGqTgSGKTyTm 208 (501)
+.||.+.+ |+.+.+. +..+++.+-.|... .++-||++|+|||+..
T Consensus 41 ~~~~~ivG----~~~~~~~-l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 41 QASQGMVG----QLAARRA-AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp SEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred cchhhccC----hHHHHHH-HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 45777765 4444433 44455556666654 8899999999999887
No 69
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=78.66 E-value=0.81 Score=42.86 Aligned_cols=25 Identities=40% Similarity=0.636 Sum_probs=19.3
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+..+++|.| ++..++||||||.+.
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3455677877 678899999999873
No 70
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=77.56 E-value=1.2 Score=43.25 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=16.7
Q ss_pred CCCeEEEeccCCCCCccccc
Q 046715 189 GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 189 G~n~tI~aYGqTgSGKTyTm 208 (501)
.....|+-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34457999999999999987
No 71
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=77.56 E-value=1.5 Score=41.09 Aligned_cols=19 Identities=37% Similarity=0.424 Sum_probs=16.4
Q ss_pred CCeEEEeccCCCCCccccc
Q 046715 190 KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 190 ~n~tI~aYGqTgSGKTyTm 208 (501)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4456899999999999987
No 72
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=77.26 E-value=0.91 Score=42.24 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=18.2
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|.| ++..++||||||.+.
T Consensus 56 i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 56 IGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 445667877 566789999999864
No 73
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=77.17 E-value=1 Score=46.97 Aligned_cols=45 Identities=29% Similarity=0.286 Sum_probs=31.0
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCC--eEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKS--GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n--~tI~aYGqTgSGKTyTm 208 (501)
+.||.+.+ |+++.+. +..+++.+..|.. ..++-||++|+|||+..
T Consensus 34 ~~~~~iiG----~~~~~~~-l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 34 QAASGLVG----QENAREA-CGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp SEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hchhhccC----HHHHHHH-HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 45676664 5566554 4456666666653 36888999999999876
No 74
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=77.02 E-value=0.91 Score=45.97 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=21.0
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+.+++.-..+.|...|+||||||.+|
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 445555555568888999999999998
No 75
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=76.66 E-value=0.97 Score=41.47 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=18.1
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|.| ++..++||||||.+.
T Consensus 45 i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 45 IPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCchhhhh
Confidence 445667877 566789999999865
No 76
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=75.92 E-value=0.83 Score=46.39 Aligned_cols=50 Identities=24% Similarity=0.406 Sum_probs=29.9
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHH-HH---hcCCCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVE-DF---LKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~-~~---l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+.||.+.+.+.--+.+.+.+..++.. .+ +..-...|+-||++|+|||+..
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 56888887544333344333333221 11 1123457999999999999877
No 77
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.85 E-value=1.2 Score=43.92 Aligned_cols=41 Identities=29% Similarity=0.403 Sum_probs=25.8
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|+.+.+.+. + +..+...+..|....++-||++|+|||+++
T Consensus 35 ~~~~i~g~~~----~----~~~l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 35 NLDEVTAQDH----A----VTVLKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp STTTCCSCCT----T----HHHHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred CHHHhhCCHH----H----HHHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 4677765432 2 223333344553333888999999999987
No 78
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=75.79 E-value=0.93 Score=44.74 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=31.1
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHH-HHhcCC---CeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVE-DFLKGK---SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~-~~l~G~---n~tI~aYGqTgSGKTyTm 208 (501)
..||.|.+.+.--+.+.+.+..|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 46888887554444444444433322 122222 346899999999999876
No 79
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=75.51 E-value=0.85 Score=43.62 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=18.9
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
++..++.|.| +++.++||||||.+.
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHHH
Confidence 3445667877 678899999999764
No 80
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=75.44 E-value=0.59 Score=42.41 Aligned_cols=34 Identities=35% Similarity=0.425 Sum_probs=22.9
Q ss_pred CCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 165 FSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 165 f~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
|....-|.+++.. +++|.+ ++..++||+|||++.
T Consensus 32 ~~l~~~Q~~~i~~--------~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 32 LQLRPYQMEVAQP--------ALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp CCCCHHHHHHHHH--------HHTTCC--EEEECSCHHHHHHHH
T ss_pred CCchHHHHHHHHH--------HhcCCC--EEEEcCCCCCHHHHH
Confidence 3444456655543 445665 567899999999887
No 81
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=75.31 E-value=1.1 Score=42.19 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=17.8
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|.| ++..++||||||.+.
T Consensus 54 i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 54 IPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 345567877 466789999999764
No 82
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=75.16 E-value=1.1 Score=41.32 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=18.4
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|.|+ +..++||||||.+.
T Consensus 51 i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 51 WPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 4456678775 67789999999864
No 83
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=75.00 E-value=1 Score=45.22 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=30.8
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHH-HHhcCC---CeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVE-DFLKGK---SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~-~~l~G~---n~tI~aYGqTgSGKTyTm 208 (501)
..|+.|.+.+.--+.+.+.+..|+-. .++.+. ...|+-||++|+|||+..
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 46888887655444555444333221 223221 235888999999999876
No 84
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=73.92 E-value=1.4 Score=44.31 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=19.5
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+..+++|.+ ++..++||||||.+.
T Consensus 70 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 70 AILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HhHHHhCCCC--EEEECCCCCcccHHH
Confidence 3455667887 678999999999874
No 85
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=73.73 E-value=1.2 Score=43.99 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=17.0
Q ss_pred CCCeEEEeccCCCCCccccc
Q 046715 189 GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 189 G~n~tI~aYGqTgSGKTyTm 208 (501)
+....++-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 44567899999999999887
No 86
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=73.43 E-value=1.3 Score=41.94 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=17.9
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|.| ++..++||||||.+.
T Consensus 74 i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 74 IPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEcCCCCCchhHh
Confidence 445667876 456679999999874
No 87
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=73.24 E-value=1.4 Score=42.45 Aligned_cols=19 Identities=53% Similarity=0.940 Sum_probs=16.2
Q ss_pred CCeEEEeccCCCCCccccc
Q 046715 190 KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 190 ~n~tI~aYGqTgSGKTyTm 208 (501)
....+...|++|||||.++
T Consensus 24 ~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SSEEEEEECSTTCSHHHHH
T ss_pred CCCEEEEECCCCccHHHHH
Confidence 3457788899999999998
No 88
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=73.16 E-value=1.8 Score=41.97 Aligned_cols=41 Identities=24% Similarity=0.384 Sum_probs=26.2
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|+.+.+ |+++.+. +..++ -.|....++-||+.|+|||++.
T Consensus 23 ~~~~~~g----~~~~~~~-l~~~l---~~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 23 RLDDIVG----QEHIVKR-LKHYV---KTGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp STTTCCS----CHHHHHH-HHHHH---HHTCCCEEEEESCTTSSHHHHH
T ss_pred CHHHhhC----CHHHHHH-HHHHH---HcCCCCeEEEECcCCCCHHHHH
Confidence 3666654 5555544 22232 3454445899999999999987
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=73.15 E-value=1.2 Score=41.66 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=18.7
Q ss_pred hHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 181 PLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 181 plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.++..+.+|. .++..|+||||||..+
T Consensus 68 ~~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 3445556675 4677899999999765
No 90
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=72.95 E-value=1.6 Score=43.44 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=28.5
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcC-CCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKG-KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G-~n~tI~aYGqTgSGKTyTm 208 (501)
.++.+++ +++..+. +...+..++.| ....++-||++|+|||+++
T Consensus 18 ~p~~l~g----r~~~~~~-l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 18 VFKEIPF----REDILRD-AAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HCSSCTT----CHHHHHH-HHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred CCCCCCC----hHHHHHH-HHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3444444 4455554 33445555544 3558999999999999977
No 91
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=72.77 E-value=1.5 Score=40.79 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=17.8
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|.| ++..++||||||.+.
T Consensus 55 i~~~~~~~~--~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 55 IPLGRCGLD--LIVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 344667877 466789999999873
No 92
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=72.69 E-value=1.1 Score=46.62 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=29.1
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHH-HHhcC---CCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVE-DFLKG---KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~-~~l~G---~n~tI~aYGqTgSGKTyTm 208 (501)
..||.|.+.+.--+.+.+.+..|+.. .++.| ....|+-||++|+|||+..
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 46888877543333333333333221 22222 2356889999999999876
No 93
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=72.53 E-value=1.3 Score=41.53 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=17.7
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|.|. +..++||||||.+.
T Consensus 60 i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 60 WPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCcCHHHHHH
Confidence 3445678774 56679999999874
No 94
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=72.33 E-value=0.9 Score=44.00 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=28.3
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHH-HHhcCCC----eEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVE-DFLKGKS----GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~-~~l~G~n----~tI~aYGqTgSGKTyTm 208 (501)
.+||.|-+.+.-.+++.+.++.|+-. .++++++ ..++-||+.|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 46787776655555565555555432 2333222 22899999999999876
No 95
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=72.16 E-value=1.8 Score=45.16 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=30.1
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+||.+++ |+.+... ...+...+-.|.-..++-||++|+|||+..
T Consensus 24 ~l~~ivG----q~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 24 NLAQYIG----QQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp STTTCCS----CHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CHHHhCC----cHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 4666664 6666532 344444444566678999999999999876
No 96
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=71.83 E-value=1.4 Score=43.14 Aligned_cols=27 Identities=30% Similarity=0.307 Sum_probs=19.9
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+..++.|...-+++.++||||||.+.
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 345667774344788999999999874
No 97
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=71.52 E-value=1.8 Score=42.51 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=29.2
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHh--cCCCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFL--KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l--~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|+.+.+ ++++.+. +..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG----~~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKN-LNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHH-HHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHH-HHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 4777665 4455544 444555443 244557899999999999877
No 98
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=71.07 E-value=1.8 Score=37.20 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=18.4
Q ss_pred hHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 181 PLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 181 plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
..+..+.. .+..|+-||++|+|||+..
T Consensus 18 ~~~~~~~~-~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 18 REVEAAAK-RTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HHHHHHHT-CSSCEEEEEETTCCHHHHH
T ss_pred HHHHHHhC-CCCcEEEECCCCccHHHHH
Confidence 33344333 3445788999999999876
No 99
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=71.05 E-value=2.7 Score=42.20 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=19.9
Q ss_pred HHHhcC---CCeEEEe--ccCCCCCccccc
Q 046715 184 EDFLKG---KSGMLAA--LGPSGSGKTHTI 208 (501)
Q Consensus 184 ~~~l~G---~n~tI~a--YGqTgSGKTyTm 208 (501)
..+..| ....++. ||+.|+|||+.+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 555555 5567888 999999999987
No 100
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=70.88 E-value=0.99 Score=41.51 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=17.2
Q ss_pred HHHhcCCCeEEEeccCCCCCccccc
Q 046715 184 EDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 184 ~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
..+++|.| ++..++||||||.+.
T Consensus 36 ~~~~~~~~--~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 36 PGALRGES--MVGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHTCC--EEEECCSSHHHHHHH
T ss_pred HHHhCCCC--EEEECCCCChHHHHH
Confidence 44557776 466789999999873
No 101
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=70.84 E-value=1.8 Score=45.62 Aligned_cols=50 Identities=20% Similarity=0.275 Sum_probs=30.4
Q ss_pred ecccccCCCCCchhHHHHhhhhhH-----HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPL-----VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~pl-----v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
..|+.+.+.+..-+.+.+.+..++ ....-......|+-||++|+|||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 457777765544445555443332 11111234567999999999999876
No 102
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.52 E-value=0.8 Score=47.62 Aligned_cols=50 Identities=28% Similarity=0.414 Sum_probs=34.0
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHH-Hhc--CC--CeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVED-FLK--GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~-~l~--G~--n~tI~aYGqTgSGKTyTm 208 (501)
-+||.|-+-+.--+++.+.+..|+... .+. |. .-.|+-||+.|+|||+..
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHH
Confidence 368888887665566666655555432 232 33 345999999999999876
No 103
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=69.98 E-value=3.1 Score=40.45 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=21.6
Q ss_pred hhhhHHHHHhcCC-----CeEEEeccCCCCCccccc
Q 046715 178 MVNPLVEDFLKGK-----SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 178 ~v~plv~~~l~G~-----n~tI~aYGqTgSGKTyTm 208 (501)
++..++..++.|+ ...|+..|++|||||+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 3455555555443 356888999999999865
No 104
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.89 E-value=1.2 Score=46.49 Aligned_cols=50 Identities=24% Similarity=0.314 Sum_probs=34.6
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHH-HHhc--CC--CeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVE-DFLK--GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~-~~l~--G~--n~tI~aYGqTgSGKTyTm 208 (501)
.+||.|-+-+.--+++.+.+..|+.. ..+. |. .-.|+-||+.|+|||++.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 46888888766666666666666543 2332 33 356999999999999876
No 105
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=69.59 E-value=2 Score=38.94 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=15.6
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...++-||+.|+|||+.+
T Consensus 45 ~~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp CSEEEEECSTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 347899999999999877
No 106
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=69.53 E-value=2.1 Score=41.55 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=23.4
Q ss_pred hhHHHHHhcCC---CeEEEeccCCCCCccccc
Q 046715 180 NPLVEDFLKGK---SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 180 ~plv~~~l~G~---n~tI~aYGqTgSGKTyTm 208 (501)
...+..+++|. --||+-||+.|+|||+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 34467788887 348999999999999887
No 107
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.32 E-value=1.9 Score=44.46 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=36.1
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHH-HHhc--CC--CeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVE-DFLK--GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~-~~l~--G~--n~tI~aYGqTgSGKTyTm 208 (501)
-+||.|-+-+.--+++-+.+.-|+.. ..+. |. .-.|+-||+.|+|||+..
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 36899988777667777777776653 2333 33 346899999999999766
No 108
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=68.90 E-value=2.4 Score=41.18 Aligned_cols=44 Identities=23% Similarity=0.261 Sum_probs=27.7
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHh--cCCCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFL--KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l--~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|+.+.+. +++.+. +..++..+. .+....|+-||++|+|||+..
T Consensus 10 ~~~~~ig~----~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 10 TLDEYIGQ----ERLKQK-LRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp STTTCCSC----HHHHHH-HHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cHHHhhCH----HHHHHH-HHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 57777654 333333 333444333 234567888999999999876
No 109
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=68.37 E-value=1.9 Score=43.34 Aligned_cols=24 Identities=38% Similarity=0.685 Sum_probs=18.3
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|.| ++..++||||||.+.
T Consensus 68 i~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 68 IKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCCchHHH
Confidence 445667877 577889999999764
No 110
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=67.97 E-value=1.4 Score=41.28 Aligned_cols=27 Identities=33% Similarity=0.562 Sum_probs=20.1
Q ss_pred HHHHhcCC--CeEEEeccCCCCCcccccc
Q 046715 183 VEDFLKGK--SGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 183 v~~~l~G~--n~tI~aYGqTgSGKTyTm~ 209 (501)
+..++.|. .-+++-||+.|+|||+...
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 44455563 2479999999999998873
No 111
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=67.74 E-value=2.8 Score=40.44 Aligned_cols=38 Identities=32% Similarity=0.422 Sum_probs=24.3
Q ss_pred chhHHHHhhhhhHHHHHhcCC------CeEEEeccCCCCCccccc
Q 046715 170 SQGEVYEKMVNPLVEDFLKGK------SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 170 sQ~evf~~~v~plv~~~l~G~------n~tI~aYGqTgSGKTyTm 208 (501)
.|..+.+. +...+.....|. ...++-+|++|+|||++.
T Consensus 21 G~~~~~~~-l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 21 GQDEAIRA-VADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SCHHHHHH-HHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred CHHHHHHH-HHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence 35556555 333333333332 357899999999999887
No 112
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=67.54 E-value=2.2 Score=45.58 Aligned_cols=29 Identities=38% Similarity=0.542 Sum_probs=20.3
Q ss_pred hhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 180 NPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 180 ~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
..+++.+.+|.+.++++ ++||||||++++
T Consensus 188 ~~~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 188 NRAVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 33445555677665555 999999999974
No 113
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=67.47 E-value=2.8 Score=36.00 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=16.4
Q ss_pred CCCeEEEeccCCCCCccccc
Q 046715 189 GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 189 G~n~tI~aYGqTgSGKTyTm 208 (501)
..+.-|+-||++|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 34556899999999999876
No 114
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=67.44 E-value=2.8 Score=41.54 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=25.6
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHH-hcC-CCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDF-LKG-KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~-l~G-~n~tI~aYGqTgSGKTyTm 208 (501)
.|+.+++ |+.+.+. +.-.|... ..| ....++-||++|+|||+.+
T Consensus 23 ~l~~~~g----~~~~~~~-l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 23 SLDEFIG----QENVKKK-LSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp SGGGCCS----CHHHHHH-HHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred cHHHccC----cHHHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence 5777775 3444444 22233322 112 2134677999999999987
No 115
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=66.99 E-value=2.1 Score=44.40 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=20.4
Q ss_pred HHHHHhcCCCeEEEeccCCCCCcccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHT 207 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyT 207 (501)
.+..++.|.+..++..|+||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 34556677666789999999999976
No 116
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=66.40 E-value=1.9 Score=43.75 Aligned_cols=27 Identities=41% Similarity=0.678 Sum_probs=19.7
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
++..+.-.....|...|+||||||++|
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 344443334567888999999999999
No 117
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=66.28 E-value=1.9 Score=43.07 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=18.0
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 52 IPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhcCCC--EEEECCCCcHHHHHH
Confidence 345567777 567889999999754
No 118
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=65.87 E-value=2.3 Score=40.88 Aligned_cols=18 Identities=33% Similarity=0.619 Sum_probs=15.7
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...++-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456888999999999987
No 119
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=65.83 E-value=2.1 Score=42.37 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=18.6
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|....++..++||||||.+.
T Consensus 36 i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 36 LPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 34556664345678899999999764
No 120
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=65.80 E-value=2.2 Score=42.67 Aligned_cols=27 Identities=30% Similarity=0.307 Sum_probs=19.7
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+..+++|.+..++..++||||||.+.
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 345566664455788899999999873
No 121
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=65.80 E-value=2.3 Score=41.05 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=17.1
Q ss_pred HHHhcCCCeEEEeccCCCCCccccc
Q 046715 184 EDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 184 ~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+.+++|.+ ++..++||||||.+.
T Consensus 26 ~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 26 PLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCcHHHHH
Confidence 34556766 566789999999865
No 122
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.69 E-value=2.8 Score=43.58 Aligned_cols=50 Identities=24% Similarity=0.362 Sum_probs=34.0
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHH-HHhc--C--CCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVE-DFLK--G--KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~-~~l~--G--~n~tI~aYGqTgSGKTyTm 208 (501)
-+||.|-+-+.--+++.+.+..|+.. ..+. | .--.|+-||+.|+|||.+.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHH
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHH
Confidence 36888887766666666666655542 2232 3 3457999999999999765
No 123
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=65.16 E-value=3.8 Score=39.92 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=25.8
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcC-CCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKG-KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G-~n~tI~aYGqTgSGKTyTm 208 (501)
+||.+.+ |+++.+. +...+. .| ....++-||++|+|||+++
T Consensus 24 ~~~~ivg----~~~~~~~-l~~~l~---~~~~~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 24 TIDECIL----PAFDKET-FKSITS---KGKIPHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp STTTSCC----CHHHHHH-HHHHHH---TTCCCSEEEECSSTTSSHHHHH
T ss_pred CHHHHhC----cHHHHHH-HHHHHH---cCCCCeEEEeeCcCCCCHHHHH
Confidence 4676664 4444333 223332 34 3456888999999999987
No 124
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=64.98 E-value=2.2 Score=40.17 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=17.0
Q ss_pred HHhcCCCeEEEeccCCCCCcccccc
Q 046715 185 DFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 185 ~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
.++++.+ ++.+|+||+|||+...
T Consensus 104 ~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 104 RWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHhCCC--EEEEeCCCCCHHHHHH
Confidence 3455555 6677899999999863
No 125
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=64.84 E-value=2.6 Score=44.75 Aligned_cols=19 Identities=37% Similarity=0.455 Sum_probs=16.1
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|.+ |...|+||||||++|
T Consensus 259 ~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 259 HKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp TTCC--EEEEESTTSSHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 6766 677899999999987
No 126
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=63.59 E-value=3.7 Score=42.89 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=27.1
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
.||.|.+. ++..+ .+++.+-.+....++-||++|+|||+...
T Consensus 178 ~ld~iiGr----~~~i~----~l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 178 SLDPVIGR----SKEIQ----RVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CSCCCCCC----HHHHH----HHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccCc----HHHHH----HHHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 46666654 33333 34444434555667889999999999883
No 127
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.44 E-value=2.5 Score=44.28 Aligned_cols=50 Identities=24% Similarity=0.321 Sum_probs=33.9
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHH-HHhc--C--CCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVE-DFLK--G--KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~-~~l~--G--~n~tI~aYGqTgSGKTyTm 208 (501)
-+||.|-+-+.--+++.+.+..|+.. ..+. | .--.|+-||+.|+|||++.
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 46888887766556666665555543 2333 3 3456999999999999765
No 128
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=63.04 E-value=2.8 Score=42.11 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=18.0
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|.|+ +..++||||||.+.
T Consensus 46 i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHccCCCE--EEEcCCCCHHHHHH
Confidence 3455678774 67889999999754
No 129
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=62.80 E-value=7.5 Score=43.55 Aligned_cols=73 Identities=22% Similarity=0.347 Sum_probs=47.6
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHH-HHhcCCC----eEEEeccCCCCCcccccc------cC-----------CCCCC
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVE-DFLKGKS----GMLAALGPSGSGKTHTIF------GC-----------PREPG 216 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~-~~l~G~n----~tI~aYGqTgSGKTyTm~------G~-----------~~~~G 216 (501)
-+||.|-+-+..-+++.+.+.-|+.. .++.++. ..|+-||+.|+|||...- |. ....|
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~g 280 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTT
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccch
Confidence 46888888777667776665556543 3455543 469999999999996551 11 12345
Q ss_pred CchhHHHHHHhhccc
Q 046715 217 MVPIALKRIFKGTTK 231 (501)
Q Consensus 217 Iipr~~~~LF~~~~~ 231 (501)
--...++.+|+....
T Consensus 281 ese~~lr~lF~~A~~ 295 (806)
T 3cf2_A 281 ESESNLRKAFEEAEK 295 (806)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 556667777765543
No 130
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=61.69 E-value=5.2 Score=39.49 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=25.7
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcC-CCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKG-KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G-~n~tI~aYGqTgSGKTyTm 208 (501)
.|+.+.+ |+++.+. +...+ -.| ....++-||+.|+|||+++
T Consensus 14 ~~~~~vg----~~~~~~~-L~~~l---~~~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 14 TFADVVG----QEHVLTA-LANGL---SLGRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp STTTSCS----CHHHHHH-HHHHH---HHTCCCSEEEEESCTTSSHHHHH
T ss_pred chhhccC----cHHHHHH-HHHHH---HhCCCCeEEEEECCCCCCHHHHH
Confidence 3565554 5555544 22222 233 3457899999999999887
No 131
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=61.52 E-value=3.1 Score=42.04 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=18.0
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|.| ++..++||||||...
T Consensus 30 i~~i~~~~~--~lv~apTGsGKT~~~ 53 (414)
T 3oiy_A 30 AKRIVQGKS--FTMVAPTGVGKTTFG 53 (414)
T ss_dssp HHHHTTTCC--EECCSCSSSSHHHHH
T ss_pred HHHHhcCCC--EEEEeCCCCCHHHHH
Confidence 344567876 578999999999843
No 132
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=60.94 E-value=2.3 Score=41.72 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=21.8
Q ss_pred chhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 170 SQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 170 sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|+++.+. +...+..|. .++-||++|+|||+.+
T Consensus 31 g~~~~~~~----l~~~l~~~~--~vll~G~pGtGKT~la 63 (331)
T 2r44_A 31 GQKYMINR----LLIGICTGG--HILLEGVPGLAKTLSV 63 (331)
T ss_dssp SCHHHHHH----HHHHHHHTC--CEEEESCCCHHHHHHH
T ss_pred CcHHHHHH----HHHHHHcCC--eEEEECCCCCcHHHHH
Confidence 35555444 333333453 5788999999999987
No 133
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=60.85 E-value=2.5 Score=40.70 Aligned_cols=41 Identities=32% Similarity=0.360 Sum_probs=25.1
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|+.+.+ |+++.+. +...+-.|....++-||+.|+|||++.
T Consensus 15 ~~~~~~g----~~~~~~~----l~~~l~~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 15 TLDEVVG----QDEVIQR----LKGYVERKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SGGGSCS----CHHHHHH----HHTTTTTTCCCCEEEESSSSSSHHHHH
T ss_pred CHHHHhC----CHHHHHH----HHHHHhCCCCCeEEEECcCCcCHHHHH
Confidence 4666654 4444443 222222354334899999999999887
No 134
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=60.74 E-value=2.5 Score=43.85 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=19.6
Q ss_pred HHHHHhcCCCeEEEeccCCCCCcccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHT 207 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyT 207 (501)
++..+++|.+. +++.|+||||||..
T Consensus 11 ~i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 11 VDEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CCGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHHhcCCe-EEEECCCCCCHhhH
Confidence 45667788764 56789999999986
No 135
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=59.77 E-value=3.4 Score=38.12 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=22.7
Q ss_pred hhhHHHHHhcC-C--CeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKG-K--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G-~--n~tI~aYGqTgSGKTyTm 208 (501)
.-+-++.++.| + ...+.-+|++|+|||..+
T Consensus 9 G~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 9 GSKELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp SCHHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred CChHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 44567777754 2 456788999999999987
No 136
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=59.65 E-value=3.5 Score=40.88 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=18.5
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+..+++|.+ ++..++||+|||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 3455667876 566789999999865
No 137
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=59.30 E-value=2.6 Score=44.59 Aligned_cols=49 Identities=29% Similarity=0.341 Sum_probs=27.2
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHH-HHhcCC----CeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVE-DFLKGK----SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~-~~l~G~----n~tI~aYGqTgSGKTyTm 208 (501)
++||.|.+.+..-.++-+- +..+-. ..+... ...|+-||++|+|||+.+
T Consensus 28 ~~f~dv~G~~~~k~~l~~l-v~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHH-HHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHcCCcHHHHHHHHHH-HHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 5788888754333333221 111110 122222 234899999999999876
No 138
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=59.09 E-value=2.5 Score=40.59 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=15.3
Q ss_pred HhcCCCeEEEeccCCCCCcccccc
Q 046715 186 FLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 186 ~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
+++|.++ +..++||||||.+..
T Consensus 125 ~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 125 GLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHhcCCe--EEEcCCCCCcHHHHH
Confidence 3444443 339999999998873
No 139
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=58.86 E-value=4.6 Score=36.79 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=18.8
Q ss_pred hhHHHHHhc--CCCeEEEeccCCCCCccccc
Q 046715 180 NPLVEDFLK--GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 180 ~plv~~~l~--G~n~tI~aYGqTgSGKTyTm 208 (501)
..+++.+.+ +..-.|.-.|++|||||+.+
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 334444432 33445666799999999877
No 140
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=58.75 E-value=3.7 Score=42.17 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=18.4
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|.| +++.++||||||...
T Consensus 87 i~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 87 IPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEECCCCCCchHHH
Confidence 445678877 577889999999864
No 141
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=58.68 E-value=4.2 Score=43.98 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=15.6
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
+..++..|++|||||+|+
T Consensus 164 ~~~~vi~G~pGTGKTt~l 181 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTV 181 (608)
T ss_dssp BSEEEEECCTTSTHHHHH
T ss_pred CCCEEEEeCCCCCHHHHH
Confidence 356788999999999987
No 142
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=57.90 E-value=3.1 Score=43.78 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=18.6
Q ss_pred HHHhcCCCeEEEeccCCCCCccccc
Q 046715 184 EDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 184 ~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
..+++|.+..++..++||||||++.
T Consensus 151 ~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 151 PLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHcCCCCCEEEECCCCccHHHHH
Confidence 4556664445688899999999873
No 143
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=57.76 E-value=3.7 Score=38.82 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=21.3
Q ss_pred HHHHhhhhhHHHHHhcCC-CeEEEeccCCCCCccccc
Q 046715 173 EVYEKMVNPLVEDFLKGK-SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 173 evf~~~v~plv~~~l~G~-n~tI~aYGqTgSGKTyTm 208 (501)
.+|+.++..++.....+. ...|+..|+.|||||+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 13 HALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 344444343333332222 346788899999999865
No 144
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=57.48 E-value=4.4 Score=42.79 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=19.8
Q ss_pred HHHHHhcCCCeEEEeccCCCCCcccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHT 207 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyT 207 (501)
++..++.|.+--+++.++||||||.+
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 34556655556778999999999986
No 145
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=57.41 E-value=2.8 Score=41.32 Aligned_cols=15 Identities=40% Similarity=0.736 Sum_probs=14.0
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
++-||+.|+|||+++
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 888999999999987
No 146
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=57.26 E-value=2.5 Score=41.89 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=18.0
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 52 IMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445567776 467789999999873
No 147
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=57.07 E-value=4.4 Score=36.82 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=19.9
Q ss_pred hHHHHHhc-CC--CeEEEeccCCCCCccccc
Q 046715 181 PLVEDFLK-GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 181 plv~~~l~-G~--n~tI~aYGqTgSGKTyTm 208 (501)
+.++.++. |+ ...+.-+|++|+|||+.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 44566664 33 345667899999999887
No 148
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=56.81 E-value=5.1 Score=43.22 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=18.5
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
|+.+++|.| +++.++||+|||.+.
T Consensus 53 i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 53 INVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHcCCC--EEEEECCCChHHHHH
Confidence 445667888 577889999999753
No 149
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=56.80 E-value=4.1 Score=44.29 Aligned_cols=26 Identities=38% Similarity=0.498 Sum_probs=18.0
Q ss_pred HHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
|..++...+ ..+-.|+.|||||+|+.
T Consensus 198 V~~al~~~~-~~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 198 VLFALSQKE-LAIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHCSS-EEEEECCTTSCHHHHHH
T ss_pred HHHHhcCCC-ceEEECCCCCCHHHHHH
Confidence 444554333 34677999999999984
No 150
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=56.67 E-value=2.9 Score=37.03 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=14.6
Q ss_pred eEEEeccCCCCCcccccc
Q 046715 192 GMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm~ 209 (501)
..+...|++|||||+.+-
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 356678999999999883
No 151
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=56.40 E-value=5.4 Score=36.13 Aligned_cols=29 Identities=31% Similarity=0.253 Sum_probs=19.6
Q ss_pred hhHHHHHhc---CCCeEEEeccCCCCCccccc
Q 046715 180 NPLVEDFLK---GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 180 ~plv~~~l~---G~n~tI~aYGqTgSGKTyTm 208 (501)
..+++.++. .....|...|.+|||||+.+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 344444443 23356777899999999887
No 152
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=55.51 E-value=4.9 Score=37.12 Aligned_cols=25 Identities=36% Similarity=0.503 Sum_probs=17.5
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+++++-.|-- +.-.|+.|||||+.+
T Consensus 15 ~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHhccCCCE--EEEECCCCCCHHHHH
Confidence 3444445544 445799999999988
No 153
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.46 E-value=4.4 Score=38.96 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=24.7
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|+.+.+ |+++.+. +...+-.|.-..++-||+.|+|||+..
T Consensus 19 ~~~~~~g----~~~~~~~----l~~~l~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 19 VLSDIVG----NKETIDR----LQQIAKDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SGGGCCS----CTHHHHH----HHHHHHSCCCCCEEEECSTTSSHHHHH
T ss_pred CHHHHHC----CHHHHHH----HHHHHHcCCCCeEEEECcCCCCHHHHH
Confidence 3666554 4444443 222223444333889999999999887
No 154
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=55.20 E-value=4.4 Score=42.61 Aligned_cols=45 Identities=27% Similarity=0.316 Sum_probs=27.3
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHH-----hcC----CCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDF-----LKG----KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~-----l~G----~n~tI~aYGqTgSGKTyTm 208 (501)
..|+.|.+.+..-+++. .++..+ +.. ....|+-||++|+|||+.+
T Consensus 13 ~~f~di~G~~~~~~~l~-----e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELK-----EVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCGGGCCSCHHHHHHHH-----HHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCHHHhCCcHHHHHHHH-----HHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 47888887543333333 233321 111 2345899999999999876
No 155
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=54.88 E-value=4.9 Score=42.40 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=15.8
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...++-||++|+|||++.
T Consensus 77 ~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357889999999999987
No 156
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=54.78 E-value=4.8 Score=39.37 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=16.8
Q ss_pred CCCeEEEeccCCCCCccccc
Q 046715 189 GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 189 G~n~tI~aYGqTgSGKTyTm 208 (501)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 44677889999999999875
No 157
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=54.58 E-value=4.8 Score=42.00 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=18.5
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+..+++|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 3445567877 566789999999774
No 158
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=54.33 E-value=5.2 Score=36.38 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=21.1
Q ss_pred hhHHHHHhc-CC--CeEEEeccCCCCCccccc
Q 046715 180 NPLVEDFLK-GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 180 ~plv~~~l~-G~--n~tI~aYGqTgSGKTyTm 208 (501)
-+-++.++. |+ ...+.-+|++|||||..+
T Consensus 11 ~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 11 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp CHHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred ChhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 355667774 43 346777899999999887
No 159
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=54.22 E-value=4.5 Score=39.47 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=16.9
Q ss_pred HHHhcCCCeEEEeccCCCCCccccc
Q 046715 184 EDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 184 ~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
..+++|.. -++..++||||||.+.
T Consensus 38 ~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 38 PLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHhCCCC-CEEEECCCCChHHHHH
Confidence 34455632 3567899999999874
No 160
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=53.74 E-value=4.9 Score=36.34 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=22.8
Q ss_pred hhhHHHHHhc-CC--CeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLK-GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~-G~--n~tI~aYGqTgSGKTyTm 208 (501)
.-+-++.++. |+ ...+..+|++|+|||..+
T Consensus 5 G~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 5 GTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp SCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred CcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 3456777775 54 357888999999999877
No 161
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=53.31 E-value=3.5 Score=46.50 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=27.7
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G 210 (501)
.||.+++. ++. +..+++.+..+....++-||++|+|||+.+.+
T Consensus 168 ~ld~viGr----~~~----i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 168 KLDPVIGR----DEE----IRRVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CSCCCCSC----HHH----HHHHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred CCcccCCc----HHH----HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 46666654 333 33444444455555678899999999998743
No 162
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=53.24 E-value=6.4 Score=38.59 Aligned_cols=16 Identities=31% Similarity=0.702 Sum_probs=14.2
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|++|||||+++
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5667799999999998
No 163
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=52.35 E-value=5.5 Score=41.41 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=17.9
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|.| ++..++||||||.+.
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 345567877 466799999999774
No 164
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=52.01 E-value=7.8 Score=38.50 Aligned_cols=17 Identities=47% Similarity=0.593 Sum_probs=14.5
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|...|++|+|||+|+
T Consensus 130 ~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45666799999999998
No 165
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=52.00 E-value=4.8 Score=40.15 Aligned_cols=18 Identities=39% Similarity=0.636 Sum_probs=15.4
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999876
No 166
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=51.96 E-value=4 Score=42.13 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=20.3
Q ss_pred HHhcCCCeEEEeccCCCCCccccc
Q 046715 185 DFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 185 ~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+++|++..|...|++|+|||..|
T Consensus 25 ~vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 25 SVKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp TCC-CCCEEEEEECCTTSSHHHHH
T ss_pred EEecCCCEEEEEECCCCCcHHHHH
Confidence 368899999999999999999865
No 167
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=51.88 E-value=5.5 Score=44.66 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=34.0
Q ss_pred eecccccCCCCCchhHHHHhhhhhHHHH-Hhc----CCCeEEEeccCCCCCccccc
Q 046715 158 YQGFSYVFSADSSQGEVYEKMVNPLVED-FLK----GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 158 ~f~FD~Vf~~~~sQ~evf~~~v~plv~~-~l~----G~n~tI~aYGqTgSGKTyTm 208 (501)
.+.||.|.+.+..-+.+.+.+..++... ++. .....|+-||++|+|||+.+
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3678999887766666666654444321 222 22346899999999999766
No 168
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=51.82 E-value=5.1 Score=43.52 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=18.2
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
++.+++|.| ++..++||||||.+.
T Consensus 16 i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 16 AQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 344566776 577899999999765
No 169
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=51.08 E-value=4.7 Score=36.80 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=14.2
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|...|++|||||.++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35667799999999887
No 170
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=50.86 E-value=7.8 Score=42.89 Aligned_cols=37 Identities=35% Similarity=0.430 Sum_probs=23.6
Q ss_pred hhHHHHhhhhhHHHHHhcCCC------eEEEeccCCCCCccccc
Q 046715 171 QGEVYEKMVNPLVEDFLKGKS------GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 171 Q~evf~~~v~plv~~~l~G~n------~tI~aYGqTgSGKTyTm 208 (501)
|+++.+. +...+..+..|.. +.++-||++|+|||+..
T Consensus 496 q~~a~~~-l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 496 QDEAVVA-VAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp CHHHHHH-HHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred hHHHHHH-HHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 4444444 3333444444443 37999999999999987
No 171
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=50.84 E-value=5.4 Score=41.03 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=16.4
Q ss_pred HHhcCCCeEEEeccCCCCCccccc
Q 046715 185 DFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 185 ~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+++|.+ ++..|+||||||.+.
T Consensus 104 ~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 104 RWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHhcCC--EEEEeCCCCCHHHHH
Confidence 3455544 667789999999886
No 172
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=50.71 E-value=6.8 Score=40.57 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=25.0
Q ss_pred CCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 168 DSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 168 ~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..|.+++..+. ..+.+| +..++..|..|||||+++
T Consensus 27 n~~Q~~av~~~~----~~i~~~-~~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIVM----KAIKEK-KHHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHHH----HHHHSS-SCEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHHH----HHHhcC-CCEEEEEeCCCCCHHHHH
Confidence 457887776633 223333 347889999999999887
No 173
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=50.63 E-value=4.2 Score=36.19 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=13.5
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666799999999877
No 174
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=50.53 E-value=4.2 Score=36.50 Aligned_cols=16 Identities=38% Similarity=0.688 Sum_probs=13.3
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999887
No 175
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=50.29 E-value=4.5 Score=34.75 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=13.5
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|..|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999855
No 176
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=49.71 E-value=7 Score=41.63 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=19.0
Q ss_pred HHHHHhcCCCeEEEeccCCCCCcccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHT 207 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyT 207 (501)
++..++.|.+.-+++.++||||||.+
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 34455655455678899999999986
No 177
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=49.36 E-value=4.2 Score=39.78 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=16.8
Q ss_pred HHhcCCCeEEEeccCCCCCccccc
Q 046715 185 DFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 185 ~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+++|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 467899999999999999999876
No 178
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=48.88 E-value=6 Score=36.38 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=20.1
Q ss_pred hHHHHHhcC-C--CeEEEeccCCCCCccccc
Q 046715 181 PLVEDFLKG-K--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 181 plv~~~l~G-~--n~tI~aYGqTgSGKTyTm 208 (501)
+-++.++.| + ...+.-+|++|+|||..+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 345666543 3 456788999999999885
No 179
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=48.77 E-value=8.7 Score=43.20 Aligned_cols=17 Identities=47% Similarity=0.776 Sum_probs=15.6
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
+.|+-||++|+|||++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68999999999999887
No 180
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=48.32 E-value=4.7 Score=38.89 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=15.9
Q ss_pred CCeEEEeccCCCCCccccc
Q 046715 190 KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 190 ~n~tI~aYGqTgSGKTyTm 208 (501)
|+-++...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 4557788899999999876
No 181
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=48.29 E-value=9.6 Score=42.06 Aligned_cols=17 Identities=41% Similarity=0.704 Sum_probs=15.5
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
+.++-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999987
No 182
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=48.26 E-value=4.4 Score=40.62 Aligned_cols=18 Identities=39% Similarity=0.649 Sum_probs=15.6
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999876
No 183
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=48.19 E-value=4.3 Score=36.30 Aligned_cols=15 Identities=40% Similarity=0.822 Sum_probs=12.7
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999987
No 184
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=48.01 E-value=12 Score=40.95 Aligned_cols=45 Identities=29% Similarity=0.343 Sum_probs=31.3
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
|.+.. |.+..+|..-++. +++.+-.|... ....|.||||||+||-
T Consensus 2 ~~~~~-~~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a 46 (664)
T 1c4o_A 2 FRYRG-PSPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMA 46 (664)
T ss_dssp CCCCS-CCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHH
T ss_pred CCCCC-CCCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHH
Confidence 33444 3788889877665 45555567533 3457999999999995
No 185
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=47.83 E-value=4.4 Score=38.05 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=16.5
Q ss_pred CeEEEeccCCCCCccccccc
Q 046715 191 SGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm~G 210 (501)
...++-||..|+|||..+++
T Consensus 12 G~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHH
Confidence 35678889999999998854
No 186
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=47.54 E-value=6.7 Score=42.48 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=15.0
Q ss_pred eEEEeccCCCCCcccccc
Q 046715 192 GMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm~ 209 (501)
..++..|+.|||||+|+.
T Consensus 196 ~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 356779999999999974
No 187
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=47.42 E-value=7.6 Score=37.84 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=15.4
Q ss_pred CCCeEEEeccCCCCCccccc
Q 046715 189 GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 189 G~n~tI~aYGqTgSGKTyTm 208 (501)
+....|.-.|.+|||||+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 33455667799999999877
No 188
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=47.20 E-value=4.7 Score=36.60 Aligned_cols=16 Identities=38% Similarity=0.683 Sum_probs=13.7
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|++|||||.++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999988
No 189
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=47.19 E-value=7.7 Score=38.93 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=15.1
Q ss_pred hcCCCeEEEeccCCCCCccccc
Q 046715 187 LKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 187 l~G~n~tI~aYGqTgSGKTyTm 208 (501)
-.|.+. .-.|+||||||+++
T Consensus 173 ~~G~~i--~ivG~sGsGKSTll 192 (361)
T 2gza_A 173 QLERVI--VVAGETGSGKTTLM 192 (361)
T ss_dssp HTTCCE--EEEESSSSCHHHHH
T ss_pred hcCCEE--EEECCCCCCHHHHH
Confidence 366654 44599999999987
No 190
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=47.17 E-value=4.5 Score=40.85 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=13.6
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
-++..|+||||||+++
T Consensus 37 ~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTA 52 (392)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred ceEEEcCCCCCHHHHH
Confidence 3566799999999988
No 191
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=46.59 E-value=4.4 Score=36.59 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=15.2
Q ss_pred EEEeccCCCCCccccccc
Q 046715 193 MLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm~G 210 (501)
.++-||+.|+|||+.+++
T Consensus 5 i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLS 22 (184)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 567899999999999843
No 192
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=46.57 E-value=7.5 Score=42.12 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=17.2
Q ss_pred HHHhcCCCeEEEeccCCCCCccccc
Q 046715 184 EDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 184 ~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
..+++|.| ++..++||||||...
T Consensus 23 ~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 23 LPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHcCCC--EEEEcCCCchHHHHH
Confidence 34566877 467889999999853
No 193
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=46.47 E-value=7.4 Score=38.02 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=14.5
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|...|++|+|||+|+
T Consensus 106 ~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45666799999999998
No 194
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=46.47 E-value=6.1 Score=44.18 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=18.0
Q ss_pred HHHhcCCCeEEEeccCCCCCccccc
Q 046715 184 EDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 184 ~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+.-.|....++..|+||||||...
T Consensus 382 ~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 382 NDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred hhccccCCCcEEEEcCCCCCHHHHH
Confidence 3333455456788999999999765
No 195
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=46.42 E-value=6 Score=38.89 Aligned_cols=17 Identities=41% Similarity=0.645 Sum_probs=14.4
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|.-.|++|||||+++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 45666799999999998
No 196
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=46.41 E-value=9.9 Score=38.34 Aligned_cols=17 Identities=29% Similarity=0.671 Sum_probs=14.6
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|...|++|||||+|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 35677799999999998
No 197
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=46.39 E-value=5 Score=35.53 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=14.4
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|...|+.|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45777899999999876
No 198
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=46.15 E-value=6.3 Score=39.67 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=16.7
Q ss_pred HHHhcCCCeEEEeccCCCCCcccccc
Q 046715 184 EDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 184 ~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
..+++| -++..++||+|||.+..
T Consensus 19 ~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 19 AKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHhhC---CEEEEcCCCCCHHHHHH
Confidence 445566 34567899999998873
No 199
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=45.80 E-value=5.1 Score=35.96 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=12.9
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999987
No 200
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=45.01 E-value=11 Score=41.65 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=19.3
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
++.|-||+.-|.+|||||.+.
T Consensus 91 ~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 799999999999999999764
No 201
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=44.97 E-value=6.2 Score=34.34 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=14.2
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+..|..|||||+..
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 35788999999999854
No 202
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=44.77 E-value=6.2 Score=34.45 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.6
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+..|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36888999999999876
No 203
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=44.38 E-value=5.2 Score=40.94 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=15.6
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
+.-++.+|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 456788999999999987
No 204
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=44.34 E-value=10 Score=40.02 Aligned_cols=16 Identities=44% Similarity=0.711 Sum_probs=14.1
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|...|++|||||.++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 5667799999999998
No 205
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=44.28 E-value=6 Score=35.41 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=13.7
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999877
No 206
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=44.05 E-value=9.6 Score=42.05 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=27.0
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
.||.+++ +++.. ..+++.+.......++-||++|+|||+.+.
T Consensus 184 ~~d~~iG----r~~~i----~~l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 184 GIDPLIG----REKEL----ERAIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp CSCCCCS----CHHHH----HHHHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred CCCCccC----CHHHH----HHHHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 4666665 33333 334444444555667889999999998763
No 207
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=44.01 E-value=6.1 Score=35.90 Aligned_cols=16 Identities=31% Similarity=0.630 Sum_probs=13.2
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
++.-.|++|||||.++
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4455699999999988
No 208
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=43.55 E-value=6.7 Score=34.53 Aligned_cols=16 Identities=31% Similarity=0.381 Sum_probs=13.6
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|.+|||||+.-
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999854
No 209
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=43.44 E-value=7.4 Score=35.92 Aligned_cols=16 Identities=44% Similarity=0.654 Sum_probs=9.3
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999887
No 210
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=43.41 E-value=6.4 Score=34.95 Aligned_cols=16 Identities=38% Similarity=0.692 Sum_probs=13.6
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|+.|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566799999999987
No 211
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=43.20 E-value=5.1 Score=36.59 Aligned_cols=18 Identities=28% Similarity=0.470 Sum_probs=15.3
Q ss_pred EEEeccCCCCCccccccc
Q 046715 193 MLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm~G 210 (501)
.++-||..|||||..+.+
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 577899999999988854
No 212
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=43.16 E-value=12 Score=41.76 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=19.3
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
++.|.||+.-|.+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 699999999999999999764
No 213
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=42.91 E-value=12 Score=41.44 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=27.0
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
.||.|.+ +++..+ .+++.+..+....++-||++|+|||...-
T Consensus 178 ~ld~iiG----~~~~i~----~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 178 SLDPVIG----RSKEIQ----RVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CSCCCCC----CHHHHH----HHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccC----chHHHH----HHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 3566665 333333 34444444555668899999999998763
No 214
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=42.44 E-value=6.6 Score=36.19 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.0
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..+.-.|++|||||..+
T Consensus 31 ~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEEeCCCCCHHHHH
Confidence 35566899999999987
No 215
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=42.34 E-value=7.2 Score=41.90 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=17.2
Q ss_pred CCCeEEEeccCCCCCcccccc
Q 046715 189 GKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 189 G~n~tI~aYGqTgSGKTyTm~ 209 (501)
-.++.++..|..|||||+|+.
T Consensus 20 ~~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 20 APRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CCSSCEEEEECTTSCHHHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHH
Confidence 345667889999999999984
No 216
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=42.33 E-value=9.5 Score=40.28 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=18.4
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
++..++.|. -|+-||++|+|||+..
T Consensus 34 l~~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 34 CLLAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHHHhcCC--eeEeecCchHHHHHHH
Confidence 344445554 5788999999999876
No 217
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=42.30 E-value=6 Score=41.83 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=17.4
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
|+.+++|.++ +..++||||||.+.
T Consensus 34 i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 34 IDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHcCCCE--EEECCCCcHHHHHH
Confidence 3455678775 45679999999754
No 218
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=42.28 E-value=14 Score=43.31 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.2
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
++.|-||+.-|.+|||||.+.
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHHH
T ss_pred cCCCcEEEEecCCCCCccHHH
Confidence 799999999999999999664
No 219
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=42.24 E-value=12 Score=41.75 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=19.1
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
++.|.||+.-|.+|||||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 699999999999999999654
No 220
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=42.21 E-value=8.3 Score=41.40 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=15.7
Q ss_pred CeEEEeccCCCCCcccccc
Q 046715 191 SGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm~ 209 (501)
+..++..|..|||||+++.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp CSEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 3567779999999999883
No 221
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=41.70 E-value=6.9 Score=34.39 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=14.4
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+..|.+|||||+..
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 35788999999999866
No 222
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=41.66 E-value=10 Score=43.63 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=17.3
Q ss_pred HHHHhcCCCeEEEeccCCCCCcccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHT 207 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyT 207 (501)
|..+++|.+ ++..|+||||||.+
T Consensus 48 I~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 48 VYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHcCCC--EEEEECCCCcHHHH
Confidence 345567754 68899999999954
No 223
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=41.65 E-value=9.6 Score=34.29 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=15.2
Q ss_pred CCeEEEeccCCCCCccccc
Q 046715 190 KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 190 ~n~tI~aYGqTgSGKTyTm 208 (501)
....|...|.+|||||+.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456777899999999876
No 224
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=41.23 E-value=10 Score=36.58 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=15.4
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..++.+|+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 67889999999999877
No 225
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=41.15 E-value=6.7 Score=37.08 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=16.0
Q ss_pred eEEEeccCCCCCcccccc
Q 046715 192 GMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm~ 209 (501)
..||..|..|+||||+|.
T Consensus 7 l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred EEEEEECCCCCcHHHHHH
Confidence 568999999999999984
No 226
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=40.55 E-value=9.7 Score=42.37 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=18.2
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|.| ++..++||||||.+.
T Consensus 257 i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCChHHHHH
Confidence 445567877 567789999999775
No 227
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=40.27 E-value=14 Score=41.41 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=19.1
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
++.|-||+.-|.+|||||.+.
T Consensus 153 ~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 689999999999999999664
No 228
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=40.18 E-value=6.6 Score=36.22 Aligned_cols=15 Identities=53% Similarity=0.775 Sum_probs=12.6
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
+.-.|++|||||..+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999887
No 229
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=40.17 E-value=14 Score=41.29 Aligned_cols=21 Identities=29% Similarity=0.397 Sum_probs=19.3
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
++.|-||+.-|.+|||||.+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 799999999999999999764
No 230
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=40.17 E-value=9.8 Score=43.32 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=18.0
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|.| ++..++||||||.+.
T Consensus 257 i~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEEeCCCchHHHHH
Confidence 344567877 466789999999875
No 231
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=40.09 E-value=13 Score=42.75 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=19.3
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
++.|.||+.-|.+|||||.+.
T Consensus 169 ~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 799999999999999999764
No 232
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=39.83 E-value=10 Score=42.42 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=15.0
Q ss_pred eEEEeccCCCCCcccccc
Q 046715 192 GMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm~ 209 (501)
..++..|+.|||||+|+.
T Consensus 376 ~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred CCEEEECCCCCCHHHHHH
Confidence 356789999999999974
No 233
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=39.67 E-value=13 Score=41.89 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=19.2
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
++.|.||+.-|.+|||||.+.
T Consensus 166 ~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhH
Confidence 699999999999999999764
No 234
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=39.57 E-value=7.6 Score=40.37 Aligned_cols=34 Identities=12% Similarity=-0.003 Sum_probs=21.9
Q ss_pred CCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccc
Q 046715 166 SADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 166 ~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~ 209 (501)
.+..-|.+.+.. +++|.+ ++..|+||||||.+..
T Consensus 113 ~l~~~Q~~ai~~--------~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 113 EPHWYQKDAVFE--------GLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp CCCHHHHHHHHH--------HHHHSE--EEEECCSTTTHHHHHH
T ss_pred CCCHHHHHHHHH--------HHhcCC--cEEEeCCCCCHHHHHH
Confidence 344456555444 334444 4678999999999864
No 235
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=39.43 E-value=7.8 Score=34.06 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=13.8
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5678899999999876
No 236
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=39.36 E-value=6.5 Score=39.01 Aligned_cols=20 Identities=45% Similarity=0.607 Sum_probs=15.5
Q ss_pred hcCCCeEEEeccCCCCCccccc
Q 046715 187 LKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 187 l~G~n~tI~aYGqTgSGKTyTm 208 (501)
-.|.+ +...|++|||||+++
T Consensus 169 ~~g~~--v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 169 AIGKN--VIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHTCC--EEEEESTTSCHHHHH
T ss_pred cCCCE--EEEECCCCCCHHHHH
Confidence 35654 556799999999987
No 237
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=39.35 E-value=14 Score=42.45 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.3
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
++.|-||+.-|.+|||||.+.
T Consensus 143 ~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 799999999999999999764
No 238
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=38.93 E-value=7.5 Score=33.73 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=13.8
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999999866
No 239
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=38.71 E-value=11 Score=32.64 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=20.2
Q ss_pred HHHHHhc-CCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLK-GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~-G~n~tI~aYGqTgSGKTyTm 208 (501)
+++.++. .....|...|..|+|||..+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 4444554 45677899999999999766
No 240
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=38.66 E-value=11 Score=42.17 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=15.1
Q ss_pred eEEEeccCCCCCcccccc
Q 046715 192 GMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm~ 209 (501)
..++..|+.|||||+|+.
T Consensus 372 ~~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHH
Confidence 356789999999999974
No 241
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=38.60 E-value=61 Score=23.26 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=26.1
Q ss_pred hhhhhhhhccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 046715 444 NFLCSKRQLPSLSGKDQLKRVKLSGLEACSERNDQIMQKFAKA 486 (501)
Q Consensus 444 ~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (501)
.+-.++.++++|+++..-...-+..++.++++++.+...+++.
T Consensus 11 tVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~ 53 (56)
T 2w6b_A 11 TVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKN 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556788888885544333444445555667777777666543
No 242
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=38.56 E-value=8.8 Score=34.52 Aligned_cols=16 Identities=31% Similarity=0.258 Sum_probs=14.1
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|.+|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788899999999876
No 243
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=38.48 E-value=8.3 Score=36.78 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=17.4
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|+...|+..|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 688899999999999999765
No 244
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=38.48 E-value=22 Score=36.76 Aligned_cols=17 Identities=41% Similarity=0.540 Sum_probs=14.5
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+..|.+|+|||+|+
T Consensus 98 ~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp EEEEECCCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45666799999999998
No 245
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=38.44 E-value=7.7 Score=35.21 Aligned_cols=16 Identities=44% Similarity=0.638 Sum_probs=13.6
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|+.|+|||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3566799999999988
No 246
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=38.34 E-value=8.9 Score=36.29 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=13.2
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|++|||||..-
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4678899999999743
No 247
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=37.96 E-value=8.6 Score=33.51 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=14.3
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+..|..|||||+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 45778899999999876
No 248
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=37.92 E-value=15 Score=42.52 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=19.1
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
++.|-||+.-|.+|||||.+.
T Consensus 153 ~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCccchH
Confidence 699999999999999999654
No 249
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=37.84 E-value=26 Score=34.03 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=13.6
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|...|..|+|||+++
T Consensus 100 vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEECSSCSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4555699999999998
No 250
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=37.62 E-value=8.6 Score=33.73 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=14.3
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+..|..|||||+..
T Consensus 4 ~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999865
No 251
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=37.60 E-value=9.3 Score=32.85 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=13.5
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999865
No 252
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=37.28 E-value=23 Score=36.78 Aligned_cols=19 Identities=42% Similarity=0.597 Sum_probs=16.2
Q ss_pred CeEEEeccCCCCCcccccc
Q 046715 191 SGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm~ 209 (501)
...|+..|.+|+|||+|+.
T Consensus 100 p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHH
Confidence 4577888999999999983
No 253
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=36.95 E-value=10 Score=32.79 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=13.4
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
..+-+|++|||||..|
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567899999999876
No 254
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=36.84 E-value=16 Score=42.07 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=19.5
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
++.|-||+.-|.+|||||.+.
T Consensus 141 ~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 141 LKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEecCCCCCHHHHH
Confidence 799999999999999999765
No 255
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=36.71 E-value=11 Score=41.00 Aligned_cols=20 Identities=40% Similarity=0.482 Sum_probs=17.2
Q ss_pred CCeEEEeccCCCCCcccccc
Q 046715 190 KSGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 190 ~n~tI~aYGqTgSGKTyTm~ 209 (501)
.++.++..|..|||||+||.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 46678888999999999995
No 256
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=36.46 E-value=8.6 Score=34.73 Aligned_cols=16 Identities=50% Similarity=0.696 Sum_probs=13.3
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|++|||||+.+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999865
No 257
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=36.17 E-value=13 Score=35.88 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=15.5
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..++.+|+.|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 58899999999999887
No 258
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=36.13 E-value=12 Score=38.33 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=13.8
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
-++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678999999999884
No 259
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=36.06 E-value=15 Score=42.53 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=16.8
Q ss_pred HHHHhcCCCeEEEeccCCCCCccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTH 206 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTy 206 (501)
+..+++|.| +++.++||||||.
T Consensus 65 i~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 65 AKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHhCCC--EEEEcCCCCCHHH
Confidence 344567866 5788999999994
No 260
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=35.89 E-value=11 Score=34.76 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=14.9
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
...--..|-||+.|||||.-+
T Consensus 17 ~~~g~l~fiyG~MgsGKTt~L 37 (195)
T 1w4r_A 17 KTRGQIQVILGPMFSGKSTEL 37 (195)
T ss_dssp --CCEEEEEEECTTSCHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHH
Confidence 333457899999999999433
No 261
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=35.82 E-value=11 Score=41.18 Aligned_cols=31 Identities=39% Similarity=0.500 Sum_probs=20.8
Q ss_pred CchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 169 SSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 169 ~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.-|.+++... +.+|. .++..|+||||||...
T Consensus 33 ~~Q~~~i~~~-------~~~~~--~~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 33 PPQTEAVKKG-------LLEGN--RLLLTSPTGSGKTLIA 63 (715)
T ss_dssp HHHHHHHHTT-------TTTTC--CEEEECCTTSCHHHHH
T ss_pred HHHHHHHHHH-------hcCCC--cEEEEcCCCCcHHHHH
Confidence 3466666542 23454 4678899999999875
No 262
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=35.16 E-value=14 Score=36.56 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=23.3
Q ss_pred hhhHHHHHhc-CC--CeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLK-GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~-G~--n~tI~aYGqTgSGKTyTm 208 (501)
+-+-++.++. |+ ...+.-||++|||||..+
T Consensus 107 G~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla 139 (343)
T 1v5w_A 107 GSQEFDKLLGGGIESMAITEAFGEFRTGKTQLS 139 (343)
T ss_dssp SCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHH
T ss_pred CChhHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4456888886 44 456788999999999876
No 263
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=35.12 E-value=18 Score=42.11 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=19.9
Q ss_pred hHHHHHhcCCCeEEEeccCCCCCcccc
Q 046715 181 PLVEDFLKGKSGMLAALGPSGSGKTHT 207 (501)
Q Consensus 181 plv~~~l~G~n~tI~aYGqTgSGKTyT 207 (501)
.++.+.-.|...-++..|+||||||..
T Consensus 614 ~il~~~~~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 614 AVLSDMCQPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp HHHHHHHSSSCCEEEEECCCCTTTHHH
T ss_pred HHHHHHhcCCcCcEEEECCCCCCHHHH
Confidence 344444457766788999999999965
No 264
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=34.89 E-value=18 Score=35.50 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=22.9
Q ss_pred hhHHHHhhhhhHHHHHhcCC-CeEEEeccCCCCCccccc
Q 046715 171 QGEVYEKMVNPLVEDFLKGK-SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 171 Q~evf~~~v~plv~~~l~G~-n~tI~aYGqTgSGKTyTm 208 (501)
|+++++. +...+-.|. ...++-||+.|+|||.+.
T Consensus 7 ~~~~~~~----l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 7 LRPDFEK----LVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp GHHHHHH----HHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred hHHHHHH----HHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 4455544 333344554 557889999999999876
No 265
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=34.89 E-value=10 Score=35.21 Aligned_cols=16 Identities=38% Similarity=0.663 Sum_probs=13.5
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|++|||||..+
T Consensus 18 ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999887
No 266
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=34.77 E-value=11 Score=37.88 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=20.8
Q ss_pred HHhcCCCeEEEeccCCCCCccccc
Q 046715 185 DFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 185 ~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+..|++..|...|.+|+|||..+
T Consensus 31 ~~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 31 SVKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHHCCEECEEECCCTTSCHHHHH
T ss_pred eecCCCCEEEEEEcCCCCCHHHHH
Confidence 356899999999999999999765
No 267
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=34.65 E-value=10 Score=37.24 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=14.8
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+..|++|+|||+|+
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 36777899999999998
No 268
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=34.63 E-value=11 Score=33.23 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=14.5
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+..|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999865
No 269
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=34.60 E-value=10 Score=35.28 Aligned_cols=17 Identities=41% Similarity=0.524 Sum_probs=14.6
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
-.|+-.|+.|||||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46788899999999876
No 270
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=34.58 E-value=13 Score=38.13 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=16.3
Q ss_pred HhcCCCeEEEeccCCCCCccccc
Q 046715 186 FLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 186 ~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+++|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 345665 577899999999984
No 271
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=34.48 E-value=11 Score=35.45 Aligned_cols=16 Identities=44% Similarity=0.935 Sum_probs=13.0
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|++|||||..|
T Consensus 33 ~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 33 FVSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4556799999999776
No 272
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=34.47 E-value=10 Score=34.17 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=13.2
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|.-.|++|||||+.+
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556699999999877
No 273
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=34.27 E-value=13 Score=32.95 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=16.0
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+..-.|.-.|.+|||||+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHH
Confidence 344567888899999999764
No 274
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=34.22 E-value=11 Score=33.13 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=14.1
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
.++.-.|+.|||||..+
T Consensus 34 e~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35667799999999977
No 275
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=34.18 E-value=15 Score=37.96 Aligned_cols=16 Identities=44% Similarity=0.389 Sum_probs=13.4
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
-++..|+||||||...
T Consensus 23 ~vlv~a~TGsGKT~~~ 38 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKI 38 (459)
T ss_dssp EEEECCCTTSCTTTTH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4677899999999883
No 276
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=33.86 E-value=8.9 Score=42.03 Aligned_cols=30 Identities=33% Similarity=0.368 Sum_probs=20.2
Q ss_pred chhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 170 SQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 170 sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
-|.+++... +.+|.| ++..|+||||||...
T Consensus 27 ~Q~~~i~~~-------~~~~~~--~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 27 PQAEALKSG-------ILEGKN--ALISIPTASGKTLIA 56 (720)
T ss_dssp HHHHHHTTT-------GGGTCE--EEEECCGGGCHHHHH
T ss_pred HHHHHHHHH-------hcCCCc--EEEEcCCccHHHHHH
Confidence 466666541 234544 788999999999664
No 277
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=33.80 E-value=11 Score=33.44 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=13.9
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+-.|..|||||+..
T Consensus 12 ~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 12 NILITGTPGTGKTSMA 27 (184)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999865
No 278
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=33.74 E-value=17 Score=36.75 Aligned_cols=17 Identities=35% Similarity=0.337 Sum_probs=14.7
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|..+|+.|||||..+
T Consensus 170 ~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46788999999999876
No 279
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=33.67 E-value=12 Score=32.86 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=13.7
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|..|||||+..
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999865
No 280
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=33.50 E-value=12 Score=32.82 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=14.1
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+..|..|||||+..
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788899999999864
No 281
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=33.36 E-value=11 Score=33.82 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=13.9
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|...|+.|||||+.+
T Consensus 30 ~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35666799999999876
No 282
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=33.35 E-value=16 Score=36.44 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=23.0
Q ss_pred hhhHHHHHhcC---CCeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKG---KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G---~n~tI~aYGqTgSGKTyTm 208 (501)
.-+-++.+|.| ....+.-+|+.|||||..+
T Consensus 116 G~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 116 GSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp SCHHHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 44667888864 2456788999999999876
No 283
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=32.50 E-value=11 Score=40.55 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=14.7
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
.-++..|.||||||+.+
T Consensus 215 pHlLIaG~TGSGKS~~L 231 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGV 231 (574)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeeEEECCCCCCHHHHH
Confidence 44688999999999987
No 284
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=32.36 E-value=12 Score=32.33 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=13.5
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|..|||||+..
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999999865
No 285
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=32.16 E-value=16 Score=35.81 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=23.2
Q ss_pred hhhHHHHHhcC-C--CeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLKG-K--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~G-~--n~tI~aYGqTgSGKTyTm 208 (501)
+-+-++.++.| + ...+.-||++|+|||..+
T Consensus 92 G~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 92 GSQALDGLLAGGIETRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred CchhHHHhcCCCCCCCcEEEEECCCCCCHhHHH
Confidence 45667888854 3 457889999999999876
No 286
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=32.13 E-value=27 Score=35.23 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.2
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|.-..|+.+|..|+|||+..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 576777889999999999876
No 287
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=32.04 E-value=31 Score=37.59 Aligned_cols=47 Identities=30% Similarity=0.437 Sum_probs=34.5
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G 210 (501)
|....=|.|...|.+-++. +++.+-+|... ....|.|||||||+|-.
T Consensus 5 ~~~~~~~~p~~~Q~~~i~~----l~~~~~~~~~~-~~l~g~~gs~k~~~~a~ 51 (661)
T 2d7d_A 5 FELVSKYQPQGDQPKAIEK----LVKGIQEGKKH-QTLLGATGTGKTFTVSN 51 (661)
T ss_dssp CCCCCSCCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred ceeecCCCCCCCCHHHHHH----HHHHHhcCCCc-EEEECcCCcHHHHHHHH
Confidence 5666678899999888766 45555566532 34569999999999953
No 288
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=31.98 E-value=15 Score=42.31 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=22.2
Q ss_pred CCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 167 ADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 167 ~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
...-|.+.+.. +++|.+ ++..++||||||...
T Consensus 87 L~~~Q~eai~~--------l~~g~~--vLV~apTGSGKTlva 118 (1010)
T 2xgj_A 87 LDPFQDTAISC--------IDRGES--VLVSAHTSAGKTVVA 118 (1010)
T ss_dssp CCHHHHHHHHH--------HHHTCE--EEEECCTTSCHHHHH
T ss_pred CCHHHHHHHHH--------HHcCCC--EEEECCCCCChHHHH
Confidence 44556665544 345655 688899999999763
No 289
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=31.84 E-value=14 Score=32.13 Aligned_cols=17 Identities=47% Similarity=0.653 Sum_probs=10.3
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+..|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CEEEEECCC----CHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36888999999999865
No 290
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=31.69 E-value=9.9 Score=41.55 Aligned_cols=31 Identities=35% Similarity=0.407 Sum_probs=21.8
Q ss_pred CCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 168 DSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 168 ~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
..-|.+++.. +++|.| ++..|+||||||...
T Consensus 27 ~~~Q~~~i~~--------i~~~~~--~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 27 FPPQAEAVEK--------VFSGKN--LLLAMPTAAGKTLLA 57 (702)
T ss_dssp CCCCHHHHHH--------HTTCSC--EEEECSSHHHHHHHH
T ss_pred CHHHHHHHHH--------HhCCCc--EEEEcCCccHHHHHH
Confidence 3457776655 345655 577899999999765
No 291
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=31.62 E-value=13 Score=41.33 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=12.8
Q ss_pred EEEeccCCCCCcccc
Q 046715 193 MLAALGPSGSGKTHT 207 (501)
Q Consensus 193 tI~aYGqTgSGKTyT 207 (501)
.++..|+||||||..
T Consensus 111 ~vii~gpTGSGKTtl 125 (773)
T 2xau_A 111 IMVFVGETGSGKTTQ 125 (773)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 467789999999994
No 292
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=31.42 E-value=15 Score=42.75 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=17.8
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
|..+++|.+ ++..|+||||||...
T Consensus 193 I~~i~~g~d--vLV~ApTGSGKTlva 216 (1108)
T 3l9o_A 193 ISCIDRGES--VLVSAHTSAGKTVVA 216 (1108)
T ss_dssp HHHHTTTCC--EEEECCSSSHHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCChHHHH
Confidence 344567765 578999999999653
No 293
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=31.38 E-value=12 Score=41.00 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=16.1
Q ss_pred HhcCCCeEEEeccCCCCCccccc
Q 046715 186 FLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 186 ~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.++|. .++..|+||||||+.+
T Consensus 152 ~l~rk--~vlv~apTGSGKT~~a 172 (677)
T 3rc3_A 152 AMQRK--IIFHSGPTNSGKTYHA 172 (677)
T ss_dssp TSCCE--EEEEECCTTSSHHHHH
T ss_pred hcCCC--EEEEEcCCCCCHHHHH
Confidence 45554 5788999999999843
No 294
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=31.38 E-value=13 Score=32.53 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=13.6
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|..|||||+..
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999865
No 295
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=31.26 E-value=13 Score=33.26 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=12.9
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|.-.|.+|||||..+
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999876
No 296
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=31.20 E-value=12 Score=34.29 Aligned_cols=16 Identities=38% Similarity=0.555 Sum_probs=13.5
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.++-.|..|||||+.+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3567899999999976
No 297
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=31.14 E-value=13 Score=34.12 Aligned_cols=16 Identities=38% Similarity=0.706 Sum_probs=13.3
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|.-.|++|+|||..+
T Consensus 21 ~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 21 TLVLIGASGVGRSHIK 36 (197)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999876
No 298
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=31.13 E-value=18 Score=35.18 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=23.6
Q ss_pred hhhHHHHHhc-CC--CeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLK-GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~-G~--n~tI~aYGqTgSGKTyTm 208 (501)
+-+-++.++. |+ ...+..||++|+|||..+
T Consensus 83 G~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 83 SSSELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp SCHHHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred CChhHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 5567888885 43 457899999999999876
No 299
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=31.08 E-value=13 Score=33.33 Aligned_cols=17 Identities=41% Similarity=0.655 Sum_probs=14.3
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+..|..|||||+..
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788899999999865
No 300
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=30.78 E-value=14 Score=34.24 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=16.9
Q ss_pred hcCCCeEEEeccCCCCCccccc
Q 046715 187 LKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 187 l~G~n~tI~aYGqTgSGKTyTm 208 (501)
++-+...|+-.|+||+|||...
T Consensus 30 v~~~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 30 VDIYGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp EEETTEEEEEECCCTTTTHHHH
T ss_pred EEECCEEEEEECCCCCCHHHHH
Confidence 3444566888999999999765
No 301
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=30.71 E-value=13 Score=32.56 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=13.3
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|..|||||+.-
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIG 19 (184)
T ss_dssp SEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3778899999999854
No 302
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=30.69 E-value=15 Score=32.28 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=14.7
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...|+..|..|||||+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 345777899999999866
No 303
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=30.50 E-value=15 Score=35.10 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=19.6
Q ss_pred HHHHHhcCC--CeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~--n~tI~aYGqTgSGKTyTm 208 (501)
.++.+.-|+ ...+.-.|++|+|||..+
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHH
Confidence 455665454 236778899999999887
No 304
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=30.36 E-value=13 Score=32.35 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=13.2
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|..|||||+..
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3677899999999865
No 305
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=30.28 E-value=27 Score=33.90 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=14.4
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...|.-.|++|||||+++
T Consensus 80 g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 345666799999999988
No 306
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=30.15 E-value=13 Score=39.49 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.8
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
-++..|.||||||+.+
T Consensus 169 HlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 169 HLLVAGTTGSGASVGV 184 (512)
T ss_dssp SEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3677899999999987
No 307
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=30.13 E-value=17 Score=36.05 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=14.2
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
-.|+..|+||||||..-
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46888999999999743
No 308
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=30.06 E-value=14 Score=32.61 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=13.7
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|..|||||+..
T Consensus 14 ~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQC 29 (199)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999865
No 309
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=30.05 E-value=18 Score=36.10 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=23.1
Q ss_pred hhhHHHHHhc--CC--CeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLK--GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~--G~--n~tI~aYGqTgSGKTyTm 208 (501)
.-+-++.++. |+ ...+..||+.|||||..+
T Consensus 45 G~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 45 GSISLDVALGIGGLPRGRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 5566777777 43 456888999999999875
No 310
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=30.03 E-value=20 Score=41.54 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=18.5
Q ss_pred HHHHHhcCCCeEEEeccCCCCCcccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHT 207 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyT 207 (501)
.+..+++|.| +++.++||||||..
T Consensus 86 ai~~il~g~d--vlv~ApTGSGKTl~ 109 (1104)
T 4ddu_A 86 WAKRIVQGKS--FTMVAPTGVGKTTF 109 (1104)
T ss_dssp HHHHHTTTCC--EEECCSTTCCHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCCcHHHH
Confidence 3455677876 57889999999984
No 311
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=29.77 E-value=14 Score=39.36 Aligned_cols=18 Identities=39% Similarity=0.623 Sum_probs=15.1
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...++-||++|+|||+++
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 446788999999999875
No 312
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=29.69 E-value=21 Score=35.02 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=14.0
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|.-.|++|||||+++
T Consensus 91 ~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred EEEEEECCCCchHHHHH
Confidence 45556799999999988
No 313
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=29.42 E-value=15 Score=31.47 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=13.3
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+-.|..|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999999755
No 314
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=28.87 E-value=16 Score=32.58 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=14.0
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
-.|+..|..|||||+..
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35788899999999864
No 315
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=28.81 E-value=14 Score=34.24 Aligned_cols=15 Identities=40% Similarity=0.784 Sum_probs=12.2
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
+.-.|++|||||..+
T Consensus 33 ~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 33 VSIIGASGSGKSTLL 47 (224)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999876
No 316
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=28.71 E-value=15 Score=36.17 Aligned_cols=17 Identities=35% Similarity=0.598 Sum_probs=14.5
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
-++.-+|++|||||+.+
T Consensus 127 e~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred CEEEEECCCCCcHHHHH
Confidence 46677899999999887
No 317
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=28.70 E-value=14 Score=33.81 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=13.8
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|..|||||+..
T Consensus 9 ~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVS 24 (227)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999865
No 318
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=28.68 E-value=17 Score=36.42 Aligned_cols=17 Identities=29% Similarity=0.642 Sum_probs=14.2
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
-.|+-.|+||||||..-
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36889999999999754
No 319
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=28.59 E-value=14 Score=30.96 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=13.7
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
-|+..|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssl~ 20 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT 20 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999775
No 320
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=28.57 E-value=15 Score=33.12 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=12.6
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+..|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 667899999999765
No 321
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=28.43 E-value=21 Score=38.36 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=26.1
Q ss_pred cccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 160 GFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 160 ~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
.|+.+++ |+.+. ..+-..+-.|. .++-+|++|+|||+.+
T Consensus 39 ~l~~i~G----~~~~l----~~l~~~i~~g~--~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 39 LIDQVIG----QEHAV----EVIKTAANQKR--HVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHCCS----CHHHH----HHHHHHHHTTC--CEEEECCTTSSHHHHH
T ss_pred ccceEEC----chhhH----hhccccccCCC--EEEEEeCCCCCHHHHH
Confidence 5777776 34433 33333444664 6677999999999887
No 322
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=28.37 E-value=21 Score=39.09 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=14.1
Q ss_pred EEEeccCCCCCcccccc
Q 046715 193 MLAALGPSGSGKTHTIF 209 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm~ 209 (501)
.++..|+||||||+.+.
T Consensus 234 ~vlv~ApTGSGKT~a~~ 250 (666)
T 3o8b_A 234 VAHLHAPTGSGKSTKVP 250 (666)
T ss_dssp EEEEECCTTSCTTTHHH
T ss_pred eEEEEeCCchhHHHHHH
Confidence 46889999999997663
No 323
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=28.32 E-value=14 Score=32.26 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=15.8
Q ss_pred CCeEEEeccCCCCCccccc
Q 046715 190 KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 190 ~n~tI~aYGqTgSGKTyTm 208 (501)
....|+..|.+|+|||..+
T Consensus 47 ~~~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3457899999999999766
No 324
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=28.27 E-value=27 Score=34.45 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=13.4
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|.--|++|||||+++
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556699999999987
No 325
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=28.27 E-value=16 Score=34.43 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.5
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+..|..|||||+..
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 46888999999999865
No 326
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=28.25 E-value=16 Score=32.17 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=14.2
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
-.|+-.|..|||||+..
T Consensus 10 ~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 36788899999999865
No 327
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=28.16 E-value=16 Score=34.48 Aligned_cols=16 Identities=38% Similarity=0.719 Sum_probs=13.3
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|+.|||||..+
T Consensus 26 ~~~liG~nGsGKSTLl 41 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFL 41 (240)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999877
No 328
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=28.04 E-value=16 Score=32.77 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=13.1
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|.-.|..|||||+..
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566799999999865
No 329
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=28.02 E-value=16 Score=31.86 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=13.6
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+-.|..|||||+..
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999864
No 330
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=28.00 E-value=15 Score=33.36 Aligned_cols=15 Identities=40% Similarity=0.822 Sum_probs=12.9
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+-.|++|+|||..+
T Consensus 4 IVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999865
No 331
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=27.85 E-value=16 Score=33.27 Aligned_cols=16 Identities=31% Similarity=0.682 Sum_probs=13.6
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|..|||||+..
T Consensus 6 ~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQA 21 (220)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999754
No 332
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=27.85 E-value=22 Score=34.67 Aligned_cols=27 Identities=15% Similarity=-0.091 Sum_probs=20.0
Q ss_pred HHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 182 LVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+...+-+|..-.++-||+.|+|||.+.
T Consensus 9 L~~~i~~~~~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 9 LKRIIEKSEGISILINGEDLSYPREVS 35 (305)
T ss_dssp HHHHHHTCSSEEEEEECSSSSHHHHHH
T ss_pred HHHHHHCCCCcEEEEECCCCCCHHHHH
Confidence 433444566557888999999999876
No 333
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=27.76 E-value=18 Score=32.93 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=13.4
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
..+-+|++|||||..|
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4567899999999776
No 334
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=27.68 E-value=88 Score=19.20 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Q 046715 479 IMQKFAKAMWNVLKEYNHKLKVM 501 (501)
Q Consensus 479 ~~~~~~~~l~~~~~e~~~~l~~~ 501 (501)
.-++|.++.++.++--+++|+.|
T Consensus 9 lheeflkkfeellklheerlkkm 31 (32)
T 1m3w_A 9 LHEEFLKKFEELLKLHEERLKKM 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678888888888888888776
No 335
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=27.66 E-value=16 Score=34.19 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=13.2
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|++|||||..+
T Consensus 33 ~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLL 48 (237)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999876
No 336
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=27.43 E-value=16 Score=35.99 Aligned_cols=16 Identities=31% Similarity=0.719 Sum_probs=13.8
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|...|+.|+|||+|+
T Consensus 107 vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSL 122 (320)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666699999999998
No 337
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=27.24 E-value=17 Score=34.54 Aligned_cols=16 Identities=44% Similarity=0.806 Sum_probs=12.9
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|++|||||+.+
T Consensus 35 ~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLI 50 (257)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455699999999877
No 338
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=27.21 E-value=17 Score=33.45 Aligned_cols=34 Identities=35% Similarity=0.564 Sum_probs=20.4
Q ss_pred EEeccCCCCCcccccccCCCCCCCchhHHHHHHh
Q 046715 194 LAALGPSGSGKTHTIFGCPREPGMVPIALKRIFK 227 (501)
Q Consensus 194 I~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~ 227 (501)
|+-.|+.||||++---==.+..|+..-..-+||.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR 36 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILR 36 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHH
Confidence 6788999999985320001223555555556664
No 339
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=27.05 E-value=17 Score=33.28 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=19.1
Q ss_pred HHHHHhc-CC--CeEEEeccCCCCCccccc
Q 046715 182 LVEDFLK-GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 182 lv~~~l~-G~--n~tI~aYGqTgSGKTyTm 208 (501)
-+|.++. |+ ...+..+|.+|+|||.-.
T Consensus 18 ~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHH
T ss_pred HHHHhhcCCCCCCeEEEEEeCCCCCHHHHH
Confidence 3455564 43 456788999999999654
No 340
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=27.03 E-value=17 Score=32.87 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=12.6
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999864
No 341
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=26.99 E-value=17 Score=34.09 Aligned_cols=16 Identities=38% Similarity=0.818 Sum_probs=12.9
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|+.|||||+.+
T Consensus 34 ~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTL 49 (240)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455699999999877
No 342
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=26.90 E-value=21 Score=31.82 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=15.7
Q ss_pred CCCeEEEeccCCCCCccccc
Q 046715 189 GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 189 G~n~tI~aYGqTgSGKTyTm 208 (501)
.....|+..|..|||||+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 33446888999999999865
No 343
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=26.82 E-value=19 Score=35.70 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=14.0
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
-.|+..|+||||||...
T Consensus 11 ~~i~i~GptgsGKt~la 27 (316)
T 3foz_A 11 KAIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCccCHHHHH
Confidence 35778999999999755
No 344
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=26.74 E-value=17 Score=35.04 Aligned_cols=15 Identities=40% Similarity=0.589 Sum_probs=12.4
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
+.-.|++|||||+.+
T Consensus 37 ~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 37 TAILGGNGVGKSTLF 51 (275)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999887
No 345
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=26.70 E-value=16 Score=30.59 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=13.2
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|.+|+|||..+
T Consensus 3 ki~v~G~~~~GKSsli 18 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLF 18 (161)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999765
No 346
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=26.65 E-value=17 Score=34.61 Aligned_cols=15 Identities=40% Similarity=0.789 Sum_probs=12.3
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
+.-.|++|||||+.+
T Consensus 35 ~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFL 49 (262)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999876
No 347
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=26.58 E-value=17 Score=32.41 Aligned_cols=16 Identities=44% Similarity=0.522 Sum_probs=13.0
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|.+|||||..+
T Consensus 8 ~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLL 23 (174)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3556799999999877
No 348
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=26.50 E-value=17 Score=32.81 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=11.7
Q ss_pred EEeccCCCCCccc
Q 046715 194 LAALGPSGSGKTH 206 (501)
Q Consensus 194 I~aYGqTgSGKTy 206 (501)
++.+|.+|||||.
T Consensus 2 ilV~Gg~~SGKS~ 14 (180)
T 1c9k_A 2 ILVTGGARSGKSR 14 (180)
T ss_dssp EEEEECTTSSHHH
T ss_pred EEEECCCCCcHHH
Confidence 6889999999995
No 349
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=26.40 E-value=18 Score=34.59 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=13.0
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|+.|||||+.+
T Consensus 35 ~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLL 50 (266)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3456699999999877
No 350
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=26.40 E-value=21 Score=35.85 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=23.7
Q ss_pred hhhhHHHHHhc--CC--CeEEEeccCCCCCccccc
Q 046715 178 MVNPLVEDFLK--GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 178 ~v~plv~~~l~--G~--n~tI~aYGqTgSGKTyTm 208 (501)
+.-+-+|.++. |+ ...+..||+.|+|||+.+
T Consensus 44 TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLa 78 (356)
T 3hr8_A 44 TGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLA 78 (356)
T ss_dssp CSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHH
T ss_pred CCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHH
Confidence 35567788886 44 457888999999999776
No 351
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=26.35 E-value=18 Score=39.88 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=16.8
Q ss_pred CCeEEEeccCCCCCccccccc
Q 046715 190 KSGMLAALGPSGSGKTHTIFG 210 (501)
Q Consensus 190 ~n~tI~aYGqTgSGKTyTm~G 210 (501)
.++.++..|..|||||++|..
T Consensus 23 ~~g~~lV~AgAGSGKT~vL~~ 43 (724)
T 1pjr_A 23 TEGPLLIMAGAGSGKTRVLTH 43 (724)
T ss_dssp CSSCEEEEECTTSCHHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHH
Confidence 355677889999999999853
No 352
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=26.29 E-value=17 Score=33.76 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=19.9
Q ss_pred EEEeccCCCCCcccccccCCCCCCCchhHHHHHHh
Q 046715 193 MLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFK 227 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~ 227 (501)
.||..|+.||||++---==.+..|+..-..-+||.
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR 65 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLR 65 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHH
Confidence 57889999999986330000122444444555554
No 353
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=26.24 E-value=18 Score=34.17 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=12.9
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|++|||||..|
T Consensus 37 ~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLT 52 (247)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999876
No 354
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=26.21 E-value=17 Score=32.04 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=13.2
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|.-.|..|||||+..
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3667899999999865
No 355
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=26.14 E-value=18 Score=34.44 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=13.3
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|++|||||..+
T Consensus 48 ~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIA 63 (260)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999877
No 356
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=26.13 E-value=18 Score=33.41 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=14.4
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+..|..|||||+..
T Consensus 17 ~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45888999999999865
No 357
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=25.99 E-value=18 Score=33.94 Aligned_cols=16 Identities=44% Similarity=0.812 Sum_probs=13.1
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|++|||||..+
T Consensus 30 ~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIF 45 (243)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999876
No 358
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=25.95 E-value=17 Score=33.66 Aligned_cols=14 Identities=43% Similarity=0.688 Sum_probs=12.0
Q ss_pred EeccCCCCCccccc
Q 046715 195 AALGPSGSGKTHTI 208 (501)
Q Consensus 195 ~aYGqTgSGKTyTm 208 (501)
.-.|+.|||||..|
T Consensus 39 ~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 39 NFHGPNGIGKTTLL 52 (214)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 44699999999887
No 359
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=25.86 E-value=17 Score=32.40 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=13.2
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|.-.|..|||||+..
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3677899999999865
No 360
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=25.85 E-value=17 Score=36.56 Aligned_cols=16 Identities=44% Similarity=0.740 Sum_probs=13.0
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|++|||||.+|
T Consensus 32 ~~~llGpsGsGKSTLL 47 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLL 47 (359)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCchHHHHH
Confidence 3455799999999887
No 361
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=25.77 E-value=20 Score=35.96 Aligned_cols=16 Identities=31% Similarity=0.671 Sum_probs=12.5
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
..+-+|++|||||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3446899999999655
No 362
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=25.69 E-value=18 Score=36.35 Aligned_cols=16 Identities=63% Similarity=1.020 Sum_probs=13.0
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|++|||||.+|
T Consensus 31 ~~~llGpnGsGKSTLL 46 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTL 46 (359)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEEcCCCchHHHHH
Confidence 3445699999999987
No 363
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=25.63 E-value=17 Score=37.64 Aligned_cols=17 Identities=35% Similarity=0.648 Sum_probs=14.5
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+.||++|+|||+..
T Consensus 51 ~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45889999999999864
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=25.47 E-value=18 Score=31.57 Aligned_cols=16 Identities=44% Similarity=0.571 Sum_probs=13.0
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|.-.|..|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3667899999999754
No 365
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=25.36 E-value=24 Score=38.18 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=18.8
Q ss_pred HHHHhcCCCeEEEeccCCCCCccccc
Q 046715 183 VEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 183 v~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..+++|.| ++..++||||||...
T Consensus 180 i~~l~~g~d--vlv~a~TGSGKT~~~ 203 (618)
T 2whx_A 180 EDIFRKKRL--TIMDLHPGAGKTKRI 203 (618)
T ss_dssp GGGGSTTCE--EEECCCTTSSTTTTH
T ss_pred HHHHhcCCe--EEEEcCCCCCHHHHH
Confidence 555667776 477899999999984
No 366
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=25.35 E-value=21 Score=35.48 Aligned_cols=16 Identities=44% Similarity=0.767 Sum_probs=13.4
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|+||||||...
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 5677899999999765
No 367
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=25.33 E-value=19 Score=34.47 Aligned_cols=16 Identities=44% Similarity=0.899 Sum_probs=13.0
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|+.|||||..+
T Consensus 52 i~~liG~NGsGKSTLl 67 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFL 67 (263)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCcHHHHH
Confidence 3455699999999877
No 368
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=25.29 E-value=18 Score=34.34 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=14.6
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..+.-+|+.|||||..+
T Consensus 31 ~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLA 47 (279)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 46778999999999876
No 369
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=25.16 E-value=19 Score=36.62 Aligned_cols=16 Identities=38% Similarity=0.804 Sum_probs=13.0
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|++|||||.+|
T Consensus 31 ~~~llGpsGsGKSTLL 46 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLL 46 (381)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCchHHHHH
Confidence 3455799999999987
No 370
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=25.08 E-value=19 Score=36.17 Aligned_cols=16 Identities=63% Similarity=1.016 Sum_probs=12.9
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|++|||||.+|
T Consensus 43 ~~~llGpnGsGKSTLL 58 (355)
T 1z47_A 43 MVGLLGPSGSGKTTIL 58 (355)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3445699999999987
No 371
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=25.04 E-value=18 Score=32.86 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=13.6
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|..|||||+..
T Consensus 7 ~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 7 KVMISGAPASGKGTQC 22 (222)
T ss_dssp CEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999865
No 372
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=25.02 E-value=18 Score=30.43 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.3
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
.-|+..|.+|+|||..+
T Consensus 6 ~~i~v~G~~~~GKssl~ 22 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMI 22 (168)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECcCCCCHHHHH
Confidence 45788899999999865
No 373
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=25.01 E-value=19 Score=34.43 Aligned_cols=15 Identities=40% Similarity=0.922 Sum_probs=12.4
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
+.-.|++|||||+.+
T Consensus 40 ~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLL 54 (266)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 345799999999886
No 374
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=24.93 E-value=19 Score=33.42 Aligned_cols=15 Identities=47% Similarity=0.780 Sum_probs=12.4
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
+.-.|+.|||||..|
T Consensus 37 ~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 37 LAVAGSTGAGKTSLL 51 (229)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999877
No 375
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=24.92 E-value=21 Score=32.36 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=13.6
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|.-.|.+|||||+..
T Consensus 7 ~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 7 VITIDGPSGAGKGTLC 22 (227)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999999866
No 376
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=24.82 E-value=33 Score=29.72 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.1
Q ss_pred HhcCCCeEEEeccCCCCCccccc
Q 046715 186 FLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 186 ~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
++......|+..|..|+|||..+
T Consensus 11 ~~~~~~~~i~v~G~~~~GKssl~ 33 (187)
T 1zj6_A 11 LFNHQEHKVIIVGLDNAGKTTIL 33 (187)
T ss_dssp HHTTSCEEEEEEESTTSSHHHHH
T ss_pred hcCCCccEEEEECCCCCCHHHHH
Confidence 45566778999999999999765
No 377
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=24.78 E-value=19 Score=31.95 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=14.3
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+..|..|||||+..
T Consensus 5 ~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 35778899999999876
No 378
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=24.77 E-value=19 Score=36.31 Aligned_cols=16 Identities=56% Similarity=0.974 Sum_probs=13.0
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|++|||||.+|
T Consensus 31 ~~~llGpnGsGKSTLL 46 (372)
T 1g29_1 31 FMILLGPSGCGKTTTL 46 (372)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCcHHHHHH
Confidence 3455699999999987
No 379
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=24.68 E-value=19 Score=36.19 Aligned_cols=16 Identities=56% Similarity=0.985 Sum_probs=13.0
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|++|||||.+|
T Consensus 31 ~~~llGpnGsGKSTLL 46 (362)
T 2it1_A 31 FMALLGPSGSGKSTLL 46 (362)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCchHHHHH
Confidence 3455699999999987
No 380
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=24.67 E-value=18 Score=32.01 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=18.9
Q ss_pred HHHhcCCCeEEEeccCCCCCccccc
Q 046715 184 EDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 184 ~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
+.++.-...-|+..|.+|+|||..+
T Consensus 22 ~~~~~~~~~ki~v~G~~~vGKSsLi 46 (192)
T 2b6h_A 22 SRIFGKKQMRILMVGLDAAGKTTIL 46 (192)
T ss_dssp GGTTTTSCEEEEEEESTTSSHHHHH
T ss_pred HHhccCCccEEEEECCCCCCHHHHH
Confidence 3444445567899999999999766
No 381
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=24.66 E-value=20 Score=34.14 Aligned_cols=16 Identities=44% Similarity=0.972 Sum_probs=12.9
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|+.|||||+.|
T Consensus 43 i~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTL 58 (256)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455699999999877
No 382
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=24.58 E-value=27 Score=31.03 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=19.7
Q ss_pred hHHHHH-hcCCCeEEEeccCCCCCccccc
Q 046715 181 PLVEDF-LKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 181 plv~~~-l~G~n~tI~aYGqTgSGKTyTm 208 (501)
++++.+ +.-...-|...|..|+|||..+
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi 42 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLL 42 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHH
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHH
Confidence 344444 3344556888999999999876
No 383
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=24.49 E-value=19 Score=32.24 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=13.1
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|.-.|.+|||||+..
T Consensus 23 ~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLA 38 (207)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999999765
No 384
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=24.38 E-value=24 Score=36.44 Aligned_cols=17 Identities=41% Similarity=0.554 Sum_probs=14.7
Q ss_pred EEEeccCCCCCcccccc
Q 046715 193 MLAALGPSGSGKTHTIF 209 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm~ 209 (501)
.|...|++|+|||++..
T Consensus 101 vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CEEEECCSSSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57778999999999883
No 385
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=24.29 E-value=20 Score=34.30 Aligned_cols=16 Identities=44% Similarity=0.779 Sum_probs=13.0
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|++|||||..+
T Consensus 47 ~~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVA 62 (271)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999876
No 386
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=24.16 E-value=20 Score=30.83 Aligned_cols=16 Identities=38% Similarity=0.493 Sum_probs=13.3
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+-.|..|||||+.-
T Consensus 9 ~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLA 24 (168)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5777899999999854
No 387
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=24.11 E-value=28 Score=37.60 Aligned_cols=38 Identities=29% Similarity=0.326 Sum_probs=23.2
Q ss_pred CCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccc
Q 046715 165 FSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 165 f~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm 208 (501)
|.+-..|.++-+. +.+.+.+|.+ +++-.+||+|||...
T Consensus 2 ~~~R~~Q~~~~~~----v~~~l~~~~~--~~~~apTGtGKT~a~ 39 (620)
T 4a15_A 2 YENRQYQVEAIDF----LRSSLQKSYG--VALESPTGSGKTIMA 39 (620)
T ss_dssp ---CHHHHHHHHH----HHHHHHHSSE--EEEECCTTSCHHHHH
T ss_pred CCCCHHHHHHHHH----HHHHHHcCCC--EEEECCCCCCHHHHH
Confidence 3344556666555 3333345644 678889999999765
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=24.08 E-value=23 Score=30.92 Aligned_cols=16 Identities=38% Similarity=0.407 Sum_probs=13.1
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|...|..|||||+..
T Consensus 7 ~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVS 22 (179)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999866
No 389
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=24.04 E-value=20 Score=33.94 Aligned_cols=15 Identities=47% Similarity=0.822 Sum_probs=12.5
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
+.-.|+.|||||..|
T Consensus 34 ~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLL 48 (253)
T ss_dssp EEEECCSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999877
No 390
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=24.03 E-value=21 Score=33.70 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=13.1
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|++|||||+.+
T Consensus 31 ~~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLG 46 (250)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999877
No 391
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=24.01 E-value=21 Score=34.15 Aligned_cols=16 Identities=44% Similarity=0.748 Sum_probs=13.2
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|++|||||+.+
T Consensus 48 ~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLS 63 (267)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999877
No 392
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=23.90 E-value=21 Score=34.45 Aligned_cols=15 Identities=33% Similarity=0.527 Sum_probs=12.5
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
+.-.|+.|||||+.+
T Consensus 50 ~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 50 WILYGLNGAGKTTLL 64 (279)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 455699999999876
No 393
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=23.85 E-value=21 Score=33.19 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=13.0
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|--.|+.|||||+.+
T Consensus 27 iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVC 42 (245)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3445599999999987
No 394
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=23.84 E-value=21 Score=36.14 Aligned_cols=16 Identities=63% Similarity=1.018 Sum_probs=13.0
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|++|||||.+|
T Consensus 39 ~~~llGpnGsGKSTLL 54 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTL 54 (372)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3455699999999987
No 395
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=23.76 E-value=21 Score=33.79 Aligned_cols=16 Identities=38% Similarity=0.866 Sum_probs=13.0
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|+.|||||+.+
T Consensus 28 ~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLL 43 (249)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3456799999999876
No 396
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=23.60 E-value=25 Score=31.48 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=16.5
Q ss_pred cCCCeEEEeccCCCCCccccc
Q 046715 188 KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 188 ~G~n~tI~aYGqTgSGKTyTm 208 (501)
.+....|+..|.+|+|||..+
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~ 29 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLL 29 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 344567899999999999766
No 397
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=23.55 E-value=20 Score=32.38 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=12.7
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+..|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 3 IILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999754
No 398
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=23.47 E-value=18 Score=41.77 Aligned_cols=16 Identities=44% Similarity=0.397 Sum_probs=13.0
Q ss_pred EEeccCCCCCcccccc
Q 046715 194 LAALGPSGSGKTHTIF 209 (501)
Q Consensus 194 I~aYGqTgSGKTyTm~ 209 (501)
.+...+||||||+|++
T Consensus 303 gli~~~TGSGKT~t~~ 318 (1038)
T 2w00_A 303 GYIWHTTGSGKTLTSF 318 (1038)
T ss_dssp EEEEECTTSSHHHHHH
T ss_pred EEEEecCCCCHHHHHH
Confidence 3556789999999984
No 399
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=23.23 E-value=22 Score=34.00 Aligned_cols=16 Identities=50% Similarity=0.837 Sum_probs=13.4
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|+.|||||+.|
T Consensus 32 ~~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLL 47 (263)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999877
No 400
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=23.17 E-value=27 Score=36.72 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=20.2
Q ss_pred hHHHHHhc-C--CCeEEEeccCCCCCccccc
Q 046715 181 PLVEDFLK-G--KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 181 plv~~~l~-G--~n~tI~aYGqTgSGKTyTm 208 (501)
+.++++.- | ...++.-.|++|||||..+
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~ 56 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFS 56 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHH
Confidence 35666665 3 3456777899999999875
No 401
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=23.10 E-value=26 Score=30.31 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=16.0
Q ss_pred CCCeEEEeccCCCCCccccc
Q 046715 189 GKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 189 G~n~tI~aYGqTgSGKTyTm 208 (501)
.....|...|.+|+|||..+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~ 35 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTIL 35 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHH
Confidence 44567888999999999766
No 402
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=23.00 E-value=29 Score=35.36 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=23.2
Q ss_pred hhhHHHHHhc-CC--CeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLK-GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~-G~--n~tI~aYGqTgSGKTyTm 208 (501)
.-+-++.+|. |+ ...+.-+|++|||||..+
T Consensus 163 G~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 163 GSKNLDTLLGGGVETGSITELFGEFRTGKSQLC 195 (400)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred CChhHHHHhcCCcCCCcEEEEEcCCCCChHHHH
Confidence 4566888884 43 456888999999999876
No 403
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=22.99 E-value=22 Score=32.05 Aligned_cols=17 Identities=29% Similarity=0.194 Sum_probs=14.1
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+..|..|||||+..
T Consensus 26 ~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLA 42 (211)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45677899999999866
No 404
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=22.96 E-value=11 Score=33.53 Aligned_cols=16 Identities=50% Similarity=0.719 Sum_probs=13.1
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|.-.|.+|||||+.+
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999877
No 405
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=22.89 E-value=22 Score=31.19 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=12.9
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|...|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 667799999999876
No 406
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=22.87 E-value=13 Score=41.55 Aligned_cols=50 Identities=22% Similarity=0.251 Sum_probs=27.8
Q ss_pred ecccccCCCCCchhHHHHhhhhhHHHH-Hhc--C--CCeEEEeccCCCCCccccc
Q 046715 159 QGFSYVFSADSSQGEVYEKMVNPLVED-FLK--G--KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 159 f~FD~Vf~~~~sQ~evf~~~v~plv~~-~l~--G--~n~tI~aYGqTgSGKTyTm 208 (501)
..|+.+.+.+.-.+.+.+.+..++... .+. | ....++-||++|+|||+..
T Consensus 474 v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHH
T ss_pred ccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHH
Confidence 456777665554444444332221110 011 1 2345889999999999876
No 407
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=22.84 E-value=26 Score=35.01 Aligned_cols=17 Identities=41% Similarity=0.835 Sum_probs=13.6
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
+..+-+|.||+|||..+
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35567899999999655
No 408
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=22.78 E-value=24 Score=35.27 Aligned_cols=16 Identities=38% Similarity=0.723 Sum_probs=13.5
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+-.|+||||||..-
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5788899999999754
No 409
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=22.66 E-value=46 Score=32.95 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=21.9
Q ss_pred hhhHHHHHh--cCCCeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFL--KGKSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l--~G~n~tI~aYGqTgSGKTyTm 208 (501)
+..++..+. .+....|...|..|+|||.++
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAI 96 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHH
Confidence 445555555 455567778899999999876
No 410
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=22.59 E-value=27 Score=34.81 Aligned_cols=17 Identities=41% Similarity=0.642 Sum_probs=14.4
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..++.||+.|+|||+..
T Consensus 124 sviLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLV 140 (331)
T ss_dssp EEEEEECSCSSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 45678999999999876
No 411
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=22.59 E-value=21 Score=30.42 Aligned_cols=18 Identities=39% Similarity=0.438 Sum_probs=15.0
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...|+..|.+|+|||..+
T Consensus 8 ~~~i~v~G~~~~GKSsli 25 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLM 25 (182)
T ss_dssp EEEEEEECCTTSSHHHHH
T ss_pred eEEEEEECCCCCCHHHHH
Confidence 356888999999999765
No 412
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=22.50 E-value=21 Score=36.71 Aligned_cols=16 Identities=44% Similarity=0.628 Sum_probs=13.2
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+--.|++|+|||..|
T Consensus 71 ~valvG~nGaGKSTLl 86 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFI 86 (413)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4555699999999986
No 413
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=22.42 E-value=24 Score=33.59 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=14.1
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+..|..|||||+..
T Consensus 3 ~~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999754
No 414
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=22.38 E-value=22 Score=31.50 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.2
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|...|..|+|||..+
T Consensus 6 ~kv~lvG~~g~GKSTLl 22 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLL 22 (199)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECcCCCCHHHHH
Confidence 45778899999999766
No 415
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=22.38 E-value=22 Score=32.32 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=13.4
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+..|..|||||+..
T Consensus 7 ~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 7 NLILIGAPGSGKGTQC 22 (217)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777899999999754
No 416
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=22.27 E-value=23 Score=33.02 Aligned_cols=19 Identities=37% Similarity=0.499 Sum_probs=15.2
Q ss_pred CCeEEEeccCCCCCccccc
Q 046715 190 KSGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 190 ~n~tI~aYGqTgSGKTyTm 208 (501)
....|+..|..|||||+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456888999999999754
No 417
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=22.19 E-value=22 Score=29.70 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=13.5
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
-|...|.+|+|||..+
T Consensus 6 ~i~v~G~~~~GKssl~ 21 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALT 21 (168)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999765
No 418
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=22.13 E-value=22 Score=29.83 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=13.7
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
-|+..|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssli 20 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIV 20 (170)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999876
No 419
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=21.89 E-value=23 Score=29.87 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=13.9
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
.-|+..|.+|+|||..+
T Consensus 7 ~~i~v~G~~~~GKSsli 23 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIM 23 (170)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 34778899999999765
No 420
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=21.81 E-value=23 Score=31.38 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=14.1
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|...|.+|+|||..+
T Consensus 27 ~~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSAL 43 (210)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35677899999999876
No 421
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=21.65 E-value=23 Score=29.82 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=14.1
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
.-|+..|.+|+|||..+
T Consensus 4 ~~i~v~G~~~~GKssli 20 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLV 20 (172)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778899999999766
No 422
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=21.62 E-value=26 Score=31.64 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=13.9
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
-.|.-.|..|||||+..
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45777899999999854
No 423
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=21.57 E-value=22 Score=31.04 Aligned_cols=17 Identities=35% Similarity=0.382 Sum_probs=14.4
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|...|.+|+|||..+
T Consensus 24 ~~i~v~G~~~~GKSsli 40 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFI 40 (195)
T ss_dssp CEEEEEEBTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45788999999999766
No 424
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=21.45 E-value=28 Score=34.30 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=13.1
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
..+-+|++|||||..|
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3457899999999876
No 425
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=21.35 E-value=23 Score=29.86 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=13.5
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
-|+..|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssli 20 (170)
T 1g16_A 5 KILLIGDSGVGKSCLL 20 (170)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4778899999999765
No 426
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=21.34 E-value=31 Score=33.59 Aligned_cols=16 Identities=50% Similarity=0.906 Sum_probs=13.5
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
...-+|++|||||..|
T Consensus 26 ~~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 26 VTAIVGPNGSGKSNII 41 (322)
T ss_dssp EEEEECCTTTCSTHHH
T ss_pred cEEEECCCCCcHHHHH
Confidence 4567899999999877
No 427
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=21.29 E-value=25 Score=32.21 Aligned_cols=15 Identities=40% Similarity=0.680 Sum_probs=12.8
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
|+..|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999755
No 428
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=21.18 E-value=27 Score=34.99 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=14.2
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
..+-+|+.|||||..+
T Consensus 28 ~~~i~G~nG~GKttll 43 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLL 43 (359)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCChhHHH
Confidence 6678899999999887
No 429
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=21.18 E-value=35 Score=34.15 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=22.8
Q ss_pred hhhHHHHHhc--CC--CeEEEeccCCCCCccccc
Q 046715 179 VNPLVEDFLK--GK--SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 179 v~plv~~~l~--G~--n~tI~aYGqTgSGKTyTm 208 (501)
.-+-++.++. |+ ...++.||..|+|||+..
T Consensus 47 G~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLa 80 (356)
T 1u94_A 47 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLT 80 (356)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHH
T ss_pred CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 5566777775 43 456888999999999876
No 430
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=21.14 E-value=26 Score=31.18 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.4
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+..|..|||||+..
T Consensus 11 ~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 35788899999999866
No 431
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=21.08 E-value=17 Score=36.31 Aligned_cols=16 Identities=44% Similarity=0.823 Sum_probs=13.2
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.+.-.|++|||||.+|
T Consensus 28 ~~~llGpnGsGKSTLL 43 (348)
T 3d31_A 28 YFVILGPTGAGKTLFL 43 (348)
T ss_dssp EEEEECCCTHHHHHHH
T ss_pred EEEEECCCCccHHHHH
Confidence 4455699999999987
No 432
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=21.06 E-value=89 Score=19.04 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 046715 483 FAKAMWNVLKEYNHKLKV 500 (501)
Q Consensus 483 ~~~~l~~~~~e~~~~l~~ 500 (501)
.-.+++.++.-+++||+.
T Consensus 9 kcaalesklqalekklea 26 (31)
T 3ljm_A 9 KCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555556666554
No 433
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=21.04 E-value=24 Score=29.59 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=14.2
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
.-|+..|.+|+|||..+
T Consensus 7 ~~i~v~G~~~~GKssli 23 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLV 23 (170)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35788899999999765
No 434
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=20.94 E-value=26 Score=32.87 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=13.9
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|.--|++|||||+.+
T Consensus 28 ~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLC 44 (252)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35667799999999876
No 435
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=20.93 E-value=29 Score=31.32 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=14.3
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
+..|.-.|..|||||+.-
T Consensus 12 ~~iIgltG~~GSGKSTva 29 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456777899999999754
No 436
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=20.90 E-value=23 Score=30.70 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=14.2
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
.-|...|.+|+|||..+
T Consensus 24 ~~i~v~G~~~~GKSsli 40 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLL 40 (195)
T ss_dssp CEEEEEEBTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788899999999766
No 437
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=20.87 E-value=24 Score=30.02 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.2
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
.-|+..|.+|+|||..+
T Consensus 8 ~~i~v~G~~~~GKSsli 24 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLM 24 (177)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999765
No 438
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=20.76 E-value=24 Score=30.07 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=14.7
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...|...|.+|+|||..+
T Consensus 8 ~~~i~v~G~~~~GKssl~ 25 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLL 25 (178)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 345788899999999766
No 439
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=20.69 E-value=26 Score=41.12 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.5
Q ss_pred CeEEEeccCCCCCcccccc
Q 046715 191 SGMLAALGPSGSGKTHTIF 209 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm~ 209 (501)
+..++.-|..|||||++|.
T Consensus 23 ~~~~~v~a~AGSGKT~vl~ 41 (1232)
T 3u4q_A 23 GQDILVAAAAGSGKTAVLV 41 (1232)
T ss_dssp SSCEEEEECTTCCHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHH
Confidence 6678888999999999984
No 440
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=20.68 E-value=35 Score=30.54 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=13.9
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
-..|...|..|+|||..+
T Consensus 30 ~~~i~i~G~~g~GKTTl~ 47 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLI 47 (221)
T ss_dssp CEEEEEEECTTSCHHHHH
T ss_pred ceEEEEEcCCCCCHHHHH
Confidence 345666699999999765
No 441
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=20.52 E-value=25 Score=29.33 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.1
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|...|.+|+|||..+
T Consensus 4 ~~i~v~G~~~~GKSsli 20 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALT 20 (167)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45788899999999764
No 442
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=20.41 E-value=25 Score=30.49 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=14.1
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
..|+..|.+|+|||..+
T Consensus 22 ~ki~vvG~~~~GKSsli 38 (190)
T 3con_A 22 YKLVVVGAGGVGKSALT 38 (190)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 35788899999999765
No 443
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=20.37 E-value=25 Score=29.63 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=14.4
Q ss_pred eEEEeccCCCCCccccc
Q 046715 192 GMLAALGPSGSGKTHTI 208 (501)
Q Consensus 192 ~tI~aYGqTgSGKTyTm 208 (501)
.-|+..|.+|+|||..+
T Consensus 7 ~~i~v~G~~~~GKssli 23 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLV 23 (170)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 45788899999999766
No 444
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=20.34 E-value=27 Score=30.90 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=13.7
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
.|+-.|..|||||+..
T Consensus 6 ~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQC 21 (204)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5777899999999876
No 445
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=20.28 E-value=24 Score=32.88 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=15.5
Q ss_pred CeEEEeccCCCCCccccc
Q 046715 191 SGMLAALGPSGSGKTHTI 208 (501)
Q Consensus 191 n~tI~aYGqTgSGKTyTm 208 (501)
...|...|.+|+|||.++
T Consensus 22 ~~~I~lvG~~g~GKStl~ 39 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAG 39 (260)
T ss_dssp CEEEEEEECTTSCHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456888999999999876
No 446
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=20.23 E-value=26 Score=35.62 Aligned_cols=15 Identities=40% Similarity=0.747 Sum_probs=12.5
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
+.-.|++|||||.+|
T Consensus 50 ~~llGpsGsGKSTLL 64 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLL 64 (390)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCChHHHHH
Confidence 455699999999886
No 447
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=20.19 E-value=26 Score=33.95 Aligned_cols=15 Identities=47% Similarity=0.780 Sum_probs=12.5
Q ss_pred EEeccCCCCCccccc
Q 046715 194 LAALGPSGSGKTHTI 208 (501)
Q Consensus 194 I~aYGqTgSGKTyTm 208 (501)
+.-.|+.|||||..|
T Consensus 67 ~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 67 LAVAGSTGAGKTSLL 81 (290)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 455699999999887
No 448
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=20.10 E-value=26 Score=29.35 Aligned_cols=16 Identities=38% Similarity=0.592 Sum_probs=13.3
Q ss_pred EEEeccCCCCCccccc
Q 046715 193 MLAALGPSGSGKTHTI 208 (501)
Q Consensus 193 tI~aYGqTgSGKTyTm 208 (501)
-|...|.+|+|||..+
T Consensus 5 ki~v~G~~~~GKssli 20 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALT 20 (167)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777899999999754
Done!