Query 046719
Match_columns 808
No_of_seqs 766 out of 4357
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 03:48:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.3E-85 7.2E-90 755.2 78.4 671 101-797 53-725 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 7.3E-85 1.6E-89 752.3 76.9 673 47-764 52-727 (857)
3 PLN03218 maturation of RBCL 1; 100.0 3.4E-71 7.4E-76 622.4 71.4 546 131-694 367-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 9.6E-71 2.1E-75 618.7 69.3 547 165-729 366-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 3.2E-63 7E-68 558.5 51.6 573 131-792 84-673 (697)
6 PLN03081 pentatricopeptide (PP 100.0 4.7E-63 1E-67 557.2 51.5 471 100-586 88-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.9E-43 8.5E-48 417.9 93.6 721 49-790 128-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 8.1E-42 1.8E-46 406.6 96.2 732 47-798 91-872 (899)
9 PRK11447 cellulose synthase su 100.0 2.3E-29 4.9E-34 297.9 79.1 650 105-791 34-739 (1157)
10 PRK11447 cellulose synthase su 100.0 4.7E-29 1E-33 295.2 80.5 660 44-756 26-739 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 9.2E-26 2E-30 253.8 74.5 644 109-798 54-746 (987)
12 PRK09782 bacteriophage N4 rece 100.0 3.3E-25 7.2E-30 249.3 73.8 615 142-798 52-712 (987)
13 KOG2002 TPR-containing nuclear 100.0 1.4E-21 2.9E-26 204.7 65.4 683 102-798 44-804 (1018)
14 KOG2002 TPR-containing nuclear 100.0 7.6E-22 1.7E-26 206.6 63.3 666 117-798 26-751 (1018)
15 KOG4626 O-linked N-acetylgluco 100.0 1.1E-24 2.5E-29 215.6 36.8 451 312-781 51-508 (966)
16 KOG4626 O-linked N-acetylgluco 99.9 3.9E-23 8.4E-28 204.8 39.6 434 347-798 51-491 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 3.8E-19 8.3E-24 198.1 53.1 253 533-794 308-573 (615)
18 KOG0495 HAT repeat protein [RN 99.9 4.9E-16 1.1E-20 156.0 64.8 607 115-792 267-880 (913)
19 KOG2076 RNA polymerase III tra 99.9 1.1E-16 2.3E-21 167.4 61.7 648 109-789 149-892 (895)
20 PRK15174 Vi polysaccharide exp 99.9 3.2E-19 6.9E-24 197.6 44.4 333 417-760 45-384 (656)
21 TIGR00990 3a0801s09 mitochondr 99.9 6.4E-18 1.4E-22 188.3 53.9 255 497-759 307-573 (615)
22 PRK11788 tetratricopeptide rep 99.9 8.4E-20 1.8E-24 193.5 35.2 262 140-406 41-309 (389)
23 KOG2076 RNA polymerase III tra 99.9 5.1E-16 1.1E-20 162.5 60.9 637 96-754 170-892 (895)
24 PRK11788 tetratricopeptide rep 99.9 2.3E-19 5E-24 190.1 36.5 298 460-764 46-354 (389)
25 PRK10049 pgaA outer membrane p 99.9 5.5E-18 1.2E-22 192.1 48.8 419 344-804 15-468 (765)
26 KOG0495 HAT repeat protein [RN 99.9 1.2E-14 2.7E-19 146.1 63.9 579 110-759 296-882 (913)
27 PRK15174 Vi polysaccharide exp 99.9 1.1E-17 2.3E-22 185.5 46.0 330 105-443 48-381 (656)
28 PRK14574 hmsH outer membrane p 99.9 3.9E-16 8.3E-21 172.9 54.2 445 315-798 40-519 (822)
29 PRK10049 pgaA outer membrane p 99.9 6E-17 1.3E-21 183.7 48.6 419 307-760 13-459 (765)
30 PRK14574 hmsH outer membrane p 99.8 1.6E-15 3.6E-20 168.0 52.8 450 276-760 37-516 (822)
31 KOG2003 TPR repeat-containing 99.8 2E-16 4.4E-21 151.7 33.8 495 135-650 202-720 (840)
32 KOG2003 TPR repeat-containing 99.8 1.6E-15 3.4E-20 145.7 38.8 480 275-778 202-709 (840)
33 KOG4422 Uncharacterized conser 99.8 1.7E-14 3.6E-19 138.0 42.5 447 134-620 116-592 (625)
34 KOG1915 Cell cycle control pro 99.8 1.9E-13 4.2E-18 132.5 48.2 452 132-597 71-548 (677)
35 KOG4422 Uncharacterized conser 99.8 6.5E-14 1.4E-18 134.0 43.9 324 239-583 116-462 (625)
36 KOG1915 Cell cycle control pro 99.7 3.3E-12 7.3E-17 124.1 46.5 438 111-562 85-548 (677)
37 KOG2047 mRNA splicing factor [ 99.7 6.8E-11 1.5E-15 119.6 55.1 559 136-743 104-709 (835)
38 KOG4318 Bicoid mRNA stability 99.7 2.2E-12 4.8E-17 134.8 45.4 659 100-793 26-809 (1088)
39 KOG2047 mRNA splicing factor [ 99.7 6.5E-10 1.4E-14 112.6 58.7 525 242-780 105-711 (835)
40 KOG1155 Anaphase-promoting com 99.7 6E-12 1.3E-16 122.3 42.1 289 494-792 237-536 (559)
41 KOG0547 Translocase of outer m 99.7 5.4E-13 1.2E-17 130.2 33.5 222 564-793 336-567 (606)
42 KOG4318 Bicoid mRNA stability 99.7 1.1E-12 2.5E-17 136.9 38.0 126 625-754 492-622 (1088)
43 KOG1173 Anaphase-promoting com 99.7 2.6E-12 5.6E-17 128.1 36.7 271 518-798 243-524 (611)
44 KOG1126 DNA-binding cell divis 99.6 4.7E-14 1E-18 143.5 25.0 295 499-807 334-635 (638)
45 PF13429 TPR_15: Tetratricopep 99.6 1.1E-15 2.3E-20 152.9 12.5 260 524-791 13-276 (280)
46 TIGR00540 hemY_coli hemY prote 99.6 9.8E-13 2.1E-17 138.4 34.8 288 496-791 96-398 (409)
47 KOG1173 Anaphase-promoting com 99.6 2.4E-11 5.2E-16 121.4 41.0 273 481-760 241-521 (611)
48 PRK10747 putative protoheme IX 99.6 2.5E-12 5.5E-17 134.4 35.8 252 529-792 128-390 (398)
49 KOG4162 Predicted calmodulin-b 99.6 4.7E-10 1E-14 116.5 49.4 133 660-797 652-788 (799)
50 KOG1155 Anaphase-promoting com 99.6 4.3E-11 9.3E-16 116.5 39.0 311 456-792 234-553 (559)
51 PRK10747 putative protoheme IX 99.6 9.1E-12 2E-16 130.3 35.4 251 495-757 129-390 (398)
52 KOG0547 Translocase of outer m 99.6 1.3E-11 2.7E-16 120.8 33.1 53 284-338 125-178 (606)
53 KOG3785 Uncharacterized conser 99.6 2.5E-10 5.5E-15 107.1 40.3 420 282-732 65-498 (557)
54 KOG1156 N-terminal acetyltrans 99.6 5.1E-10 1.1E-14 113.8 44.9 459 322-792 20-511 (700)
55 TIGR00540 hemY_coli hemY prote 99.6 1E-11 2.2E-16 130.8 34.8 123 146-270 96-218 (409)
56 PF13429 TPR_15: Tetratricopep 99.6 2.2E-14 4.8E-19 143.4 13.9 260 489-756 13-276 (280)
57 KOG1156 N-terminal acetyltrans 99.6 3.1E-08 6.7E-13 101.2 55.2 625 110-798 18-694 (700)
58 KOG1126 DNA-binding cell divis 99.6 1.3E-12 2.8E-17 133.3 24.1 284 465-763 335-626 (638)
59 KOG3785 Uncharacterized conser 99.6 3.8E-10 8.2E-15 105.9 38.3 450 281-762 29-495 (557)
60 KOG0985 Vesicle coat protein c 99.5 2.3E-08 5.1E-13 106.4 55.3 179 588-793 983-1163(1666)
61 COG2956 Predicted N-acetylgluc 99.5 5.7E-11 1.2E-15 110.3 30.8 289 497-794 48-349 (389)
62 KOG4162 Predicted calmodulin-b 99.5 3.4E-09 7.4E-14 110.3 47.1 125 631-760 657-786 (799)
63 KOG0985 Vesicle coat protein c 99.5 1.6E-07 3.5E-12 100.2 57.9 82 695-784 1251-1333(1666)
64 COG3071 HemY Uncharacterized e 99.5 1.9E-10 4.1E-15 110.5 33.1 285 497-791 97-389 (400)
65 COG3071 HemY Uncharacterized e 99.5 2.8E-10 6.2E-15 109.3 32.9 292 148-477 98-389 (400)
66 COG2956 Predicted N-acetylgluc 99.5 4.5E-10 9.8E-15 104.5 31.5 287 393-686 49-346 (389)
67 KOG1129 TPR repeat-containing 99.5 2.7E-11 5.9E-16 112.3 22.6 234 558-798 227-464 (478)
68 KOG1174 Anaphase-promoting com 99.4 8.8E-09 1.9E-13 99.1 39.0 272 480-760 228-503 (564)
69 KOG1127 TPR repeat-containing 99.4 3.7E-08 8E-13 105.2 47.2 184 115-302 474-658 (1238)
70 KOG3616 Selective LIM binding 99.4 1.3E-07 2.9E-12 97.4 47.1 482 218-796 545-1028(1636)
71 KOG1127 TPR repeat-containing 99.4 1.2E-07 2.6E-12 101.4 48.2 283 467-757 801-1104(1238)
72 KOG3617 WD40 and TPR repeat-co 99.4 1.3E-07 2.7E-12 98.9 46.9 561 109-764 738-1366(1416)
73 KOG3616 Selective LIM binding 99.4 5E-07 1.1E-11 93.3 50.3 192 177-402 740-931 (1636)
74 PF12569 NARP1: NMDA receptor- 99.4 2E-08 4.3E-13 105.9 41.1 291 319-618 14-334 (517)
75 KOG2376 Signal recognition par 99.4 5.2E-08 1.1E-12 98.5 41.2 182 603-791 321-519 (652)
76 TIGR02521 type_IV_pilW type IV 99.4 3.9E-10 8.5E-15 110.2 26.7 198 590-792 32-232 (234)
77 KOG1174 Anaphase-promoting com 99.4 5E-08 1.1E-12 94.0 38.0 291 426-728 208-504 (564)
78 KOG2376 Signal recognition par 99.3 8.7E-08 1.9E-12 96.9 40.5 462 137-649 15-517 (652)
79 PRK12370 invasion protein regu 99.3 1.2E-09 2.5E-14 119.8 28.9 269 131-409 253-536 (553)
80 PRK12370 invasion protein regu 99.3 1.9E-09 4.1E-14 118.2 30.4 266 168-443 255-535 (553)
81 KOG3617 WD40 and TPR repeat-co 99.3 4.1E-07 9E-12 95.2 43.5 545 168-795 725-1362(1416)
82 TIGR02521 type_IV_pilW type IV 99.3 1.8E-09 3.8E-14 105.5 26.1 199 134-336 31-230 (234)
83 KOG1840 Kinesin light chain [C 99.3 1.8E-09 3.8E-14 112.1 26.8 243 520-790 200-477 (508)
84 PF12569 NARP1: NMDA receptor- 99.3 2E-07 4.4E-12 98.4 42.0 126 383-510 198-331 (517)
85 KOG1129 TPR repeat-containing 99.3 8.1E-10 1.7E-14 102.7 19.5 230 103-338 227-458 (478)
86 KOG1840 Kinesin light chain [C 99.3 8.1E-09 1.8E-13 107.2 29.0 241 488-755 203-477 (508)
87 PRK11189 lipoprotein NlpI; Pro 99.2 4.4E-09 9.6E-14 105.2 26.0 240 529-778 36-286 (296)
88 KOG0548 Molecular co-chaperone 99.2 1.7E-07 3.7E-12 94.1 34.8 236 522-775 227-472 (539)
89 PF13041 PPR_2: PPR repeat fam 99.2 3.2E-11 6.9E-16 83.4 6.3 49 202-250 1-49 (50)
90 PF13041 PPR_2: PPR repeat fam 99.2 4.9E-11 1.1E-15 82.4 6.5 50 237-286 1-50 (50)
91 COG3063 PilF Tfp pilus assembl 99.2 1.6E-08 3.4E-13 90.1 23.4 202 592-798 38-242 (250)
92 PRK11189 lipoprotein NlpI; Pro 99.2 1.9E-08 4E-13 100.7 27.3 93 592-686 67-160 (296)
93 KOG0548 Molecular co-chaperone 99.2 9.9E-08 2.1E-12 95.7 31.0 226 557-798 227-461 (539)
94 KOG0624 dsRNA-activated protei 99.2 1.3E-06 2.8E-11 82.4 36.3 247 529-805 165-436 (504)
95 COG3063 PilF Tfp pilus assembl 99.2 6E-09 1.3E-13 92.8 19.4 164 627-794 38-204 (250)
96 KOG4340 Uncharacterized conser 99.1 6.6E-07 1.4E-11 82.6 28.2 351 137-511 13-373 (459)
97 KOG0624 dsRNA-activated protei 99.0 1.6E-06 3.5E-11 81.8 30.6 194 598-798 164-376 (504)
98 cd05804 StaR_like StaR_like; a 99.0 1.3E-06 2.7E-11 91.4 34.1 195 104-302 11-214 (355)
99 cd05804 StaR_like StaR_like; a 99.0 1.9E-06 4.2E-11 90.0 34.5 200 134-338 6-215 (355)
100 KOG1125 TPR repeat-containing 99.0 5.6E-08 1.2E-12 98.3 21.1 143 639-785 410-564 (579)
101 KOG1914 mRNA cleavage and poly 99.0 4.9E-05 1.1E-09 76.7 41.1 186 430-617 309-500 (656)
102 PF04733 Coatomer_E: Coatomer 99.0 1.3E-08 2.8E-13 100.0 16.4 227 557-797 38-270 (290)
103 KOG4340 Uncharacterized conser 99.0 9.9E-07 2.2E-11 81.5 26.7 289 279-579 15-335 (459)
104 KOG1914 mRNA cleavage and poly 98.9 8.4E-05 1.8E-09 75.1 41.5 186 535-721 309-500 (656)
105 PRK04841 transcriptional regul 98.9 0.00011 2.3E-09 87.6 50.0 335 388-722 383-760 (903)
106 KOG2053 Mitochondrial inherita 98.9 0.00016 3.5E-09 77.7 50.7 235 46-305 9-257 (932)
107 KOG1128 Uncharacterized conser 98.9 7.5E-08 1.6E-12 99.9 19.2 217 558-797 402-621 (777)
108 KOG2053 Mitochondrial inherita 98.9 0.00019 4.2E-09 77.2 47.1 116 109-230 19-136 (932)
109 PRK15359 type III secretion sy 98.9 4.2E-08 9E-13 86.0 14.5 98 698-798 29-127 (144)
110 PRK04841 transcriptional regul 98.9 1.2E-05 2.7E-10 95.5 38.8 374 382-758 344-761 (903)
111 PLN02789 farnesyltranstransfer 98.9 2.4E-06 5.3E-11 85.2 27.3 219 566-792 49-302 (320)
112 KOG1125 TPR repeat-containing 98.8 7.5E-07 1.6E-11 90.4 21.2 249 494-750 295-564 (579)
113 PRK10370 formate-dependent nit 98.8 3.1E-07 6.7E-12 85.2 16.8 124 671-798 52-179 (198)
114 PRK15359 type III secretion sy 98.8 3.6E-07 7.8E-12 80.0 15.5 123 643-774 13-137 (144)
115 KOG3060 Uncharacterized conser 98.8 3.4E-06 7.3E-11 76.6 21.5 193 567-766 25-228 (289)
116 PF04733 Coatomer_E: Coatomer 98.8 9.8E-07 2.1E-11 86.8 20.0 153 597-759 110-267 (290)
117 TIGR03302 OM_YfiO outer membra 98.8 1E-06 2.3E-11 85.7 20.1 186 588-795 32-235 (235)
118 PRK15179 Vi polysaccharide bio 98.7 2.3E-06 5.1E-11 94.1 24.5 139 654-797 82-222 (694)
119 COG5010 TadD Flp pilus assembl 98.7 2.9E-06 6.2E-11 77.9 19.4 157 628-789 70-228 (257)
120 KOG1128 Uncharacterized conser 98.7 1.6E-06 3.5E-11 90.4 19.9 238 514-774 393-634 (777)
121 PLN02789 farnesyltranstransfer 98.7 5.4E-06 1.2E-10 82.7 23.3 196 595-797 43-255 (320)
122 TIGR02552 LcrH_SycD type III s 98.7 5.1E-07 1.1E-11 79.0 14.1 115 680-798 5-120 (135)
123 KOG1070 rRNA processing protei 98.7 1.9E-05 4.2E-10 88.2 27.6 206 413-623 1457-1668(1710)
124 KOG1070 rRNA processing protei 98.6 2.9E-05 6.3E-10 86.9 27.7 231 518-754 1457-1697(1710)
125 PF12854 PPR_1: PPR repeat 98.6 4.8E-08 1E-12 60.2 3.9 32 234-265 2-33 (34)
126 PF12854 PPR_1: PPR repeat 98.6 8.3E-08 1.8E-12 59.1 3.7 32 199-230 2-33 (34)
127 PRK10370 formate-dependent nit 98.6 1E-05 2.2E-10 75.1 19.2 117 639-760 55-176 (198)
128 PRK15363 pathogenicity island 98.6 1.9E-06 4.2E-11 73.6 13.1 106 695-803 37-143 (157)
129 COG5010 TadD Flp pilus assembl 98.5 8.5E-06 1.8E-10 74.9 17.7 159 103-265 70-228 (257)
130 KOG3060 Uncharacterized conser 98.5 7.7E-05 1.7E-09 68.0 22.7 196 530-732 23-229 (289)
131 PRK14720 transcript cleavage f 98.5 3E-05 6.5E-10 86.2 24.2 237 483-774 30-268 (906)
132 PF07079 DUF1347: Protein of u 98.5 0.0017 3.8E-08 64.6 42.8 458 320-805 17-536 (549)
133 KOG3081 Vesicle coat complex C 98.5 0.00013 2.9E-09 67.1 23.9 108 667-779 146-257 (299)
134 TIGR03302 OM_YfiO outer membra 98.5 2.1E-05 4.5E-10 76.5 20.5 183 552-758 31-233 (235)
135 COG4783 Putative Zn-dependent 98.4 0.00021 4.7E-09 71.8 25.9 206 569-798 252-460 (484)
136 PRK15179 Vi polysaccharide bio 98.4 0.00011 2.4E-09 81.2 26.0 132 168-302 85-216 (694)
137 KOG0553 TPR repeat-containing 98.4 2E-06 4.4E-11 80.5 10.4 89 667-759 90-180 (304)
138 COG4783 Putative Zn-dependent 98.4 0.00051 1.1E-08 69.2 27.5 122 667-792 315-437 (484)
139 TIGR02552 LcrH_SycD type III s 98.3 1.9E-05 4.1E-10 69.0 15.0 113 645-760 5-117 (135)
140 KOG3081 Vesicle coat complex C 98.3 0.00052 1.1E-08 63.3 24.0 48 500-548 189-236 (299)
141 PRK14720 transcript cleavage f 98.3 0.00029 6.2E-09 78.7 25.9 242 95-390 27-268 (906)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.8E-05 8.3E-10 78.1 17.4 128 659-792 170-297 (395)
143 PF09976 TPR_21: Tetratricopep 98.3 5.1E-05 1.1E-09 66.9 15.6 125 661-789 15-144 (145)
144 TIGR02795 tol_pal_ybgF tol-pal 98.2 2.8E-05 6E-10 66.2 13.0 102 695-798 4-111 (119)
145 PF12895 Apc3: Anaphase-promot 98.2 2.4E-06 5.1E-11 67.1 5.3 81 706-788 2-83 (84)
146 PF09976 TPR_21: Tetratricopep 98.2 6.9E-05 1.5E-09 66.0 15.0 113 639-754 27-144 (145)
147 cd00189 TPR Tetratricopeptide 98.1 3.3E-05 7.1E-10 62.6 11.4 96 696-794 3-99 (100)
148 PF13414 TPR_11: TPR repeat; P 98.1 8.4E-06 1.8E-10 61.2 7.0 67 727-794 2-69 (69)
149 PF13432 TPR_16: Tetratricopep 98.1 1.4E-05 3E-10 59.0 6.9 62 734-796 3-64 (65)
150 PLN03088 SGT1, suppressor of 98.1 5.5E-05 1.2E-09 77.6 13.4 105 663-772 7-113 (356)
151 PRK15363 pathogenicity island 98.1 0.00022 4.7E-09 61.3 14.4 98 658-758 35-133 (157)
152 KOG0553 TPR repeat-containing 98.0 7.1E-05 1.5E-09 70.4 12.3 129 632-765 89-223 (304)
153 KOG0550 Molecular chaperone (D 98.0 0.00051 1.1E-08 67.3 18.3 85 669-757 260-350 (486)
154 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00012 2.6E-09 62.2 13.1 97 660-760 4-108 (119)
155 COG3898 Uncharacterized membra 98.0 0.017 3.7E-07 56.5 31.9 282 463-757 98-392 (531)
156 PRK02603 photosystem I assembl 98.0 0.00014 3E-09 66.4 13.3 115 659-796 36-153 (172)
157 COG4700 Uncharacterized protei 98.0 0.0018 3.8E-08 56.3 18.3 134 654-791 85-221 (251)
158 KOG2041 WD40 repeat protein [G 97.9 0.03 6.4E-07 59.0 29.5 205 376-615 689-904 (1189)
159 KOG2041 WD40 repeat protein [G 97.9 0.016 3.5E-07 60.9 27.6 59 695-753 1023-1082(1189)
160 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00039 8.5E-09 70.9 16.3 123 592-721 172-296 (395)
161 PLN03088 SGT1, suppressor of 97.9 0.00022 4.8E-09 73.2 14.8 92 632-728 10-103 (356)
162 KOG0550 Molecular chaperone (D 97.9 0.0099 2.1E-07 58.7 24.4 88 634-723 259-351 (486)
163 PF12895 Apc3: Anaphase-promot 97.9 2.4E-05 5.2E-10 61.3 5.7 81 671-754 2-84 (84)
164 cd00189 TPR Tetratricopeptide 97.9 0.0002 4.4E-09 57.8 11.3 96 661-758 3-98 (100)
165 PRK10803 tol-pal system protei 97.9 0.00026 5.6E-09 68.5 13.3 101 696-798 146-252 (263)
166 TIGR00756 PPR pentatricopeptid 97.8 2.9E-05 6.2E-10 48.8 4.3 33 206-238 2-34 (35)
167 PF13371 TPR_9: Tetratricopept 97.8 6.8E-05 1.5E-09 57.0 7.1 67 735-802 2-68 (73)
168 TIGR00756 PPR pentatricopeptid 97.8 2.7E-05 5.9E-10 48.9 3.8 33 276-308 2-34 (35)
169 PRK15331 chaperone protein Sic 97.8 0.00077 1.7E-08 58.2 13.5 92 698-791 42-133 (165)
170 COG3898 Uncharacterized membra 97.8 0.046 9.9E-07 53.7 30.7 295 487-798 85-399 (531)
171 PF14559 TPR_19: Tetratricopep 97.8 2.9E-05 6.4E-10 58.0 4.2 57 739-796 2-58 (68)
172 PRK02603 photosystem I assembl 97.8 0.00076 1.6E-08 61.5 14.3 128 624-778 35-166 (172)
173 PF07079 DUF1347: Protein of u 97.8 0.057 1.2E-06 54.3 45.2 464 284-791 16-544 (549)
174 PF14938 SNAP: Soluble NSF att 97.8 0.0021 4.6E-08 64.0 18.1 142 661-805 117-277 (282)
175 COG4235 Cytochrome c biogenesi 97.7 0.0014 3E-08 62.4 15.6 104 692-798 155-262 (287)
176 PRK10153 DNA-binding transcrip 97.7 0.0014 3.1E-08 70.3 17.8 66 728-795 420-485 (517)
177 PF12688 TPR_5: Tetratrico pep 97.7 0.00089 1.9E-08 55.6 12.7 90 664-755 7-102 (120)
178 CHL00033 ycf3 photosystem I as 97.7 0.00081 1.8E-08 61.1 13.6 78 660-739 37-117 (168)
179 PF13812 PPR_3: Pentatricopept 97.7 6.1E-05 1.3E-09 46.9 4.1 31 206-236 3-33 (34)
180 CHL00033 ycf3 photosystem I as 97.7 0.00088 1.9E-08 60.9 13.3 104 694-798 36-155 (168)
181 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.077 1.7E-06 53.2 35.6 132 625-760 398-534 (660)
182 PF13812 PPR_3: Pentatricopept 97.7 6E-05 1.3E-09 46.9 3.8 32 276-307 3-34 (34)
183 KOG1130 Predicted G-alpha GTPa 97.6 0.0012 2.7E-08 64.5 13.8 134 659-792 196-344 (639)
184 PF10037 MRP-S27: Mitochondria 97.6 0.0015 3.2E-08 67.1 14.4 121 202-322 64-186 (429)
185 PRK10153 DNA-binding transcrip 97.6 0.0059 1.3E-07 65.7 19.4 84 675-760 401-485 (517)
186 PF13414 TPR_11: TPR repeat; P 97.6 0.00031 6.6E-09 52.6 7.1 65 692-758 2-68 (69)
187 PF13432 TPR_16: Tetratricopep 97.6 0.00027 5.9E-09 52.0 6.7 59 699-759 3-62 (65)
188 PF14938 SNAP: Soluble NSF att 97.6 0.0065 1.4E-07 60.5 18.3 103 695-798 116-231 (282)
189 COG4700 Uncharacterized protei 97.5 0.033 7.1E-07 48.7 19.4 132 621-756 86-221 (251)
190 PF01535 PPR: PPR repeat; Int 97.5 0.00014 3E-09 44.1 3.6 28 206-233 2-29 (31)
191 COG4235 Cytochrome c biogenesi 97.5 0.0047 1E-07 58.9 15.1 102 655-760 153-259 (287)
192 PF10037 MRP-S27: Mitochondria 97.5 0.0024 5.2E-08 65.5 14.1 119 308-426 65-185 (429)
193 COG1729 Uncharacterized protei 97.5 0.0023 5E-08 60.2 12.7 101 698-798 146-250 (262)
194 KOG0543 FKBP-type peptidyl-pro 97.5 0.0024 5.3E-08 63.2 13.4 128 666-795 216-358 (397)
195 PF01535 PPR: PPR repeat; Int 97.4 0.00015 3.3E-09 43.8 3.3 27 277-303 3-29 (31)
196 PF12688 TPR_5: Tetratrico pep 97.4 0.0069 1.5E-07 50.3 14.0 95 697-791 5-103 (120)
197 PF05843 Suf: Suppressor of fo 97.4 0.0046 9.9E-08 61.2 14.6 129 486-617 3-135 (280)
198 PF05843 Suf: Suppressor of fo 97.4 0.0032 7E-08 62.3 13.4 128 172-302 4-135 (280)
199 PRK10803 tol-pal system protei 97.4 0.0028 6.1E-08 61.4 12.5 98 659-760 144-249 (263)
200 PF14559 TPR_19: Tetratricopep 97.3 0.00048 1E-08 51.3 5.6 52 705-758 3-55 (68)
201 PRK10866 outer membrane biogen 97.3 0.099 2.2E-06 50.4 22.7 57 384-440 180-238 (243)
202 PRK10866 outer membrane biogen 97.3 0.068 1.5E-06 51.5 21.2 58 385-443 38-98 (243)
203 PF08579 RPM2: Mitochondrial r 97.3 0.0033 7.1E-08 50.0 9.7 42 139-180 30-72 (120)
204 PF08579 RPM2: Mitochondrial r 97.3 0.0036 7.7E-08 49.8 9.7 74 107-180 33-115 (120)
205 KOG2796 Uncharacterized conser 97.3 0.052 1.1E-06 50.3 18.3 130 137-267 180-314 (366)
206 PRK11906 transcriptional regul 97.2 0.0091 2E-07 60.9 14.4 150 639-792 274-436 (458)
207 PF06239 ECSIT: Evolutionarily 97.2 0.0047 1E-07 55.8 10.8 50 237-286 45-99 (228)
208 PF13281 DUF4071: Domain of un 97.1 0.093 2E-06 53.0 20.5 164 593-758 145-335 (374)
209 KOG0543 FKBP-type peptidyl-pro 97.1 0.0043 9.3E-08 61.5 11.0 100 698-798 213-326 (397)
210 KOG1130 Predicted G-alpha GTPa 97.1 0.021 4.6E-07 56.3 15.1 131 556-686 197-343 (639)
211 KOG1538 Uncharacterized conser 97.1 0.11 2.3E-06 54.6 20.8 39 293-334 619-657 (1081)
212 PF13371 TPR_9: Tetratricopept 97.1 0.0033 7.1E-08 47.5 7.8 58 701-760 3-61 (73)
213 PRK11906 transcriptional regul 97.0 0.064 1.4E-06 54.9 18.5 160 590-755 252-434 (458)
214 PF13424 TPR_12: Tetratricopep 96.9 0.0036 7.9E-08 48.1 6.8 61 695-755 7-73 (78)
215 KOG2114 Vacuolar assembly/sort 96.9 0.91 2E-05 49.8 26.2 176 207-405 337-516 (933)
216 PRK15331 chaperone protein Sic 96.9 0.07 1.5E-06 46.4 14.6 92 663-757 42-134 (165)
217 PF06239 ECSIT: Evolutionarily 96.8 0.011 2.4E-07 53.5 10.1 103 378-499 46-153 (228)
218 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.66 1.4E-05 46.9 40.7 468 118-632 28-543 (660)
219 PF13525 YfiO: Outer membrane 96.7 0.23 5E-06 46.5 18.8 58 386-443 12-71 (203)
220 COG0457 NrfG FOG: TPR repeat [ 96.7 0.61 1.3E-05 45.0 30.6 85 533-617 37-123 (291)
221 PF13525 YfiO: Outer membrane 96.7 0.35 7.5E-06 45.4 19.8 60 419-478 10-71 (203)
222 PF13424 TPR_12: Tetratricopep 96.7 0.0032 7E-08 48.3 5.0 63 729-791 6-74 (78)
223 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0086 1.9E-07 60.9 9.1 98 692-795 74-177 (453)
224 PF10300 DUF3808: Protein of u 96.6 0.12 2.6E-06 55.3 18.0 120 672-793 247-377 (468)
225 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.028 6.1E-07 57.3 12.3 66 655-722 72-141 (453)
226 PF13428 TPR_14: Tetratricopep 96.6 0.0047 1E-07 40.9 4.7 41 729-770 2-42 (44)
227 PF13281 DUF4071: Domain of un 96.6 0.76 1.7E-05 46.6 22.1 163 557-721 144-333 (374)
228 KOG2796 Uncharacterized conser 96.6 0.63 1.4E-05 43.5 26.6 133 628-761 181-319 (366)
229 KOG1258 mRNA processing protei 96.6 1.3 2.8E-05 46.9 36.7 183 589-777 297-489 (577)
230 PF03704 BTAD: Bacterial trans 96.6 0.061 1.3E-06 47.4 13.0 68 696-765 65-138 (146)
231 KOG4234 TPR repeat-containing 96.5 0.028 6.1E-07 49.7 9.8 93 665-760 102-200 (271)
232 KOG2114 Vacuolar assembly/sort 96.5 1.7 3.7E-05 47.8 24.6 175 103-300 338-516 (933)
233 KOG4555 TPR repeat-containing 96.5 0.054 1.2E-06 44.3 10.5 95 665-760 50-147 (175)
234 KOG1538 Uncharacterized conser 96.3 0.37 8E-06 50.8 17.9 51 695-754 749-799 (1081)
235 COG0457 NrfG FOG: TPR repeat [ 96.2 1.3 2.8E-05 42.6 32.3 224 498-757 37-265 (291)
236 COG1729 Uncharacterized protei 96.2 0.093 2E-06 49.7 12.1 102 660-763 144-250 (262)
237 PF04840 Vps16_C: Vps16, C-ter 96.1 1.7 3.8E-05 43.6 29.5 62 137-212 3-64 (319)
238 KOG4555 TPR repeat-containing 96.1 0.1 2.3E-06 42.7 10.3 93 700-794 50-146 (175)
239 KOG1941 Acetylcholine receptor 96.1 0.21 4.5E-06 48.8 14.1 165 591-755 85-273 (518)
240 PF13512 TPR_18: Tetratricopep 96.1 0.19 4.1E-06 42.7 12.4 109 668-797 20-133 (142)
241 PF13431 TPR_17: Tetratricopep 96.1 0.0069 1.5E-07 37.2 2.8 32 751-783 2-33 (34)
242 PF13512 TPR_18: Tetratricopep 95.9 0.13 2.8E-06 43.7 10.6 79 695-773 12-92 (142)
243 KOG2280 Vacuolar assembly/sort 95.9 3.5 7.7E-05 44.9 28.7 89 174-264 442-532 (829)
244 PF04840 Vps16_C: Vps16, C-ter 95.8 2.4 5.1E-05 42.7 30.8 107 416-542 179-285 (319)
245 KOG4648 Uncharacterized conser 95.8 0.029 6.3E-07 53.9 7.1 94 664-760 103-197 (536)
246 PF03704 BTAD: Bacterial trans 95.8 0.09 2E-06 46.3 10.1 69 136-205 64-137 (146)
247 PF04184 ST7: ST7 protein; In 95.7 0.68 1.5E-05 47.8 16.5 55 664-719 265-321 (539)
248 COG3118 Thioredoxin domain-con 95.7 0.84 1.8E-05 43.9 16.1 143 634-781 144-290 (304)
249 KOG2610 Uncharacterized conser 95.6 0.36 7.7E-06 46.7 13.5 156 635-795 114-279 (491)
250 PF10300 DUF3808: Protein of u 95.6 0.69 1.5E-05 49.6 17.5 115 639-756 249-375 (468)
251 COG2976 Uncharacterized protei 95.5 0.89 1.9E-05 40.7 14.5 90 665-758 96-189 (207)
252 COG3118 Thioredoxin domain-con 95.4 2.2 4.8E-05 41.1 17.7 122 669-793 145-266 (304)
253 PF04184 ST7: ST7 protein; In 95.4 1.7 3.8E-05 45.0 18.0 148 524-686 173-323 (539)
254 PF07719 TPR_2: Tetratricopept 95.3 0.048 1E-06 33.4 4.6 32 764-795 2-33 (34)
255 COG4785 NlpI Lipoprotein NlpI, 95.2 2.3 5E-05 38.7 16.8 179 114-303 80-266 (297)
256 KOG2610 Uncharacterized conser 95.2 0.88 1.9E-05 44.2 14.6 152 564-719 113-273 (491)
257 KOG1258 mRNA processing protei 95.2 5.3 0.00012 42.6 37.4 183 448-635 296-486 (577)
258 COG2976 Uncharacterized protei 95.1 1.1 2.4E-05 40.1 13.9 134 660-798 56-194 (207)
259 PF13428 TPR_14: Tetratricopep 95.1 0.044 9.6E-07 36.2 4.2 35 764-798 2-36 (44)
260 KOG1941 Acetylcholine receptor 94.9 1.1 2.3E-05 44.1 14.3 130 661-790 125-273 (518)
261 KOG1585 Protein required for f 94.8 3.5 7.5E-05 38.4 18.3 43 396-440 75-117 (308)
262 KOG1585 Protein required for f 94.7 3.8 8.2E-05 38.2 18.7 52 734-786 196-250 (308)
263 KOG1550 Extracellular protein 94.7 8.8 0.00019 42.4 25.4 78 709-794 455-540 (552)
264 PF00515 TPR_1: Tetratricopept 94.5 0.071 1.5E-06 32.7 3.9 30 765-794 3-32 (34)
265 KOG4234 TPR repeat-containing 94.4 0.69 1.5E-05 41.4 10.9 94 702-797 104-202 (271)
266 PF12921 ATP13: Mitochondrial 94.4 0.56 1.2E-05 39.5 10.2 47 411-457 49-96 (126)
267 COG4105 ComL DNA uptake lipopr 94.4 4.7 0.0001 38.2 21.0 79 381-460 37-117 (254)
268 PF09613 HrpB1_HrpK: Bacterial 94.4 1.7 3.7E-05 37.9 13.1 109 669-784 21-130 (160)
269 smart00299 CLH Clathrin heavy 94.4 2.9 6.4E-05 36.3 15.3 11 707-717 110-120 (140)
270 KOG1920 IkappaB kinase complex 94.3 9.4 0.0002 44.2 21.9 78 666-754 973-1052(1265)
271 PF12921 ATP13: Mitochondrial 94.3 0.44 9.6E-06 40.2 9.4 48 235-282 48-96 (126)
272 PF13170 DUF4003: Protein of u 94.2 6.5 0.00014 39.1 19.8 138 571-708 79-232 (297)
273 KOG2062 26S proteasome regulat 94.2 11 0.00023 41.3 35.0 253 530-791 368-634 (929)
274 PF02259 FAT: FAT domain; Int 94.1 8.3 0.00018 40.0 23.2 118 657-775 145-304 (352)
275 PF04053 Coatomer_WDAD: Coatom 94.1 0.96 2.1E-05 47.8 13.5 131 311-474 297-427 (443)
276 COG4649 Uncharacterized protei 94.0 3.6 7.8E-05 36.1 14.0 122 146-267 70-195 (221)
277 KOG2280 Vacuolar assembly/sort 94.0 12 0.00025 41.2 33.5 87 315-403 443-531 (829)
278 smart00299 CLH Clathrin heavy 94.0 3 6.4E-05 36.3 14.5 42 174-216 12-53 (140)
279 PF08631 SPO22: Meiosis protei 94.0 7.2 0.00016 38.7 26.1 162 626-790 86-273 (278)
280 KOG1920 IkappaB kinase complex 93.7 12 0.00026 43.4 21.2 135 455-615 914-1052(1265)
281 PF02259 FAT: FAT domain; Int 93.7 9 0.00019 39.7 20.3 104 692-795 145-290 (352)
282 COG4649 Uncharacterized protei 93.7 4.6 9.9E-05 35.5 15.2 124 109-232 68-195 (221)
283 PF00515 TPR_1: Tetratricopept 93.7 0.15 3.3E-06 31.2 4.1 31 729-759 2-32 (34)
284 PF09205 DUF1955: Domain of un 93.6 3.7 8.1E-05 34.2 14.6 24 698-721 125-148 (161)
285 KOG3364 Membrane protein invol 93.6 0.94 2E-05 37.7 9.4 74 725-798 29-106 (149)
286 KOG3941 Intermediate in Toll s 93.4 0.63 1.4E-05 44.0 9.3 103 378-499 66-173 (406)
287 PF13176 TPR_7: Tetratricopept 93.3 0.16 3.5E-06 31.6 3.8 25 731-755 2-26 (36)
288 PF07719 TPR_2: Tetratricopept 93.3 0.19 4E-06 30.7 4.1 31 729-759 2-32 (34)
289 PF04053 Coatomer_WDAD: Coatom 93.3 2.4 5.2E-05 44.8 14.6 56 657-721 346-401 (443)
290 KOG3941 Intermediate in Toll s 93.2 0.75 1.6E-05 43.5 9.5 33 253-285 86-118 (406)
291 PF13174 TPR_6: Tetratricopept 93.2 0.16 3.4E-06 30.8 3.7 31 765-795 2-32 (33)
292 COG4105 ComL DNA uptake lipopr 93.2 8 0.00017 36.7 23.0 54 530-583 45-100 (254)
293 PF10602 RPN7: 26S proteasome 93.1 2.1 4.5E-05 38.9 12.2 60 660-719 38-99 (177)
294 PF10602 RPN7: 26S proteasome 93.1 1.4 2.9E-05 40.1 11.0 62 695-756 38-101 (177)
295 COG0790 FOG: TPR repeat, SEL1 93.0 11 0.00024 37.8 22.9 150 639-798 93-272 (292)
296 PRK09687 putative lyase; Provi 92.9 10 0.00023 37.5 27.9 123 659-795 143-266 (280)
297 PF09613 HrpB1_HrpK: Bacterial 92.6 4.2 9.1E-05 35.6 12.6 103 698-804 15-118 (160)
298 PF09205 DUF1955: Domain of un 92.6 5.5 0.00012 33.2 16.5 63 731-794 89-151 (161)
299 PF13431 TPR_17: Tetratricopep 92.4 0.13 2.9E-06 31.5 2.5 20 728-747 13-32 (34)
300 TIGR02561 HrpB1_HrpK type III 92.4 5 0.00011 34.4 12.4 91 670-765 22-114 (153)
301 KOG2471 TPR repeat-containing 92.4 4.9 0.00011 41.4 14.4 110 666-776 248-382 (696)
302 COG3629 DnrI DNA-binding trans 92.3 1.6 3.5E-05 42.3 10.7 77 659-737 154-236 (280)
303 KOG1550 Extracellular protein 92.2 22 0.00048 39.4 28.8 80 672-758 453-539 (552)
304 PF13176 TPR_7: Tetratricopept 92.1 0.27 5.8E-06 30.7 3.6 27 765-791 1-27 (36)
305 PF13170 DUF4003: Protein of u 91.7 15 0.00033 36.6 21.1 148 605-754 78-243 (297)
306 PF13181 TPR_8: Tetratricopept 91.7 0.33 7.2E-06 29.6 3.8 30 765-794 3-32 (34)
307 PRK11619 lytic murein transgly 91.6 27 0.00059 39.3 29.9 145 416-571 36-180 (644)
308 PF14853 Fis1_TPR_C: Fis1 C-te 91.4 0.46 1E-05 32.6 4.4 33 766-798 4-36 (53)
309 PF08631 SPO22: Meiosis protei 91.3 16 0.00036 36.2 26.4 102 450-554 85-192 (278)
310 PRK09687 putative lyase; Provi 91.0 17 0.00038 35.9 27.3 232 518-773 36-277 (280)
311 KOG2066 Vacuolar assembly/sort 90.8 30 0.00066 38.4 27.2 167 106-301 363-532 (846)
312 COG4785 NlpI Lipoprotein NlpI, 90.8 13 0.00028 34.1 15.8 64 519-583 99-162 (297)
313 PF06552 TOM20_plant: Plant sp 90.6 2.1 4.6E-05 38.0 8.8 75 674-758 51-137 (186)
314 COG3629 DnrI DNA-binding trans 90.2 2.6 5.7E-05 40.9 9.9 77 346-423 155-236 (280)
315 PF09986 DUF2225: Uncharacteri 90.1 6.4 0.00014 37.0 12.3 89 669-757 88-194 (214)
316 KOG4642 Chaperone-dependent E3 89.9 5.6 0.00012 37.0 11.0 113 668-784 20-138 (284)
317 COG2909 MalT ATP-dependent tra 89.8 40 0.00087 38.2 25.9 249 51-303 365-647 (894)
318 KOG4648 Uncharacterized conser 89.6 1.6 3.6E-05 42.4 7.9 90 633-727 106-197 (536)
319 COG2909 MalT ATP-dependent tra 89.2 45 0.00097 37.9 30.3 225 494-718 425-684 (894)
320 PF09986 DUF2225: Uncharacteri 89.1 6 0.00013 37.2 11.3 95 704-798 88-200 (214)
321 PF06552 TOM20_plant: Plant sp 89.1 3.3 7E-05 36.9 8.7 74 709-792 51-136 (186)
322 KOG4507 Uncharacterized conser 88.8 3.2 7E-05 43.7 9.8 144 622-771 569-718 (886)
323 TIGR02561 HrpB1_HrpK type III 88.7 13 0.00028 32.0 11.7 74 702-778 19-93 (153)
324 KOG1586 Protein required for f 88.6 21 0.00046 33.3 18.6 95 664-759 119-226 (288)
325 PF10345 Cohesin_load: Cohesin 88.5 48 0.001 37.4 41.9 191 600-791 372-605 (608)
326 KOG4642 Chaperone-dependent E3 88.5 3.1 6.6E-05 38.7 8.4 89 702-793 19-108 (284)
327 KOG4570 Uncharacterized conser 88.1 5.8 0.00013 38.5 10.2 52 634-685 111-162 (418)
328 PF10345 Cohesin_load: Cohesin 87.8 53 0.0012 37.0 42.7 185 116-301 38-252 (608)
329 PRK15180 Vi polysaccharide bio 87.8 4.6 0.0001 41.4 9.9 132 635-770 300-433 (831)
330 PF07035 Mic1: Colon cancer-as 87.7 20 0.00043 31.9 15.0 25 265-289 20-44 (167)
331 PF13181 TPR_8: Tetratricopept 87.3 0.92 2E-05 27.6 3.3 30 729-758 2-31 (34)
332 KOG0545 Aryl-hydrocarbon recep 87.2 9.2 0.0002 35.8 10.6 62 733-795 235-296 (329)
333 KOG0551 Hsp90 co-chaperone CNS 87.2 5.6 0.00012 39.0 9.7 93 697-790 85-180 (390)
334 KOG4507 Uncharacterized conser 86.9 1.9 4.1E-05 45.3 6.9 126 677-806 592-720 (886)
335 KOG2396 HAT (Half-A-TPR) repea 86.9 44 0.00096 35.1 40.9 75 308-384 104-179 (568)
336 PF13174 TPR_6: Tetratricopept 86.7 1 2.2E-05 27.1 3.2 29 731-759 3-31 (33)
337 PF11207 DUF2989: Protein of u 86.7 9.4 0.0002 34.9 10.3 75 709-784 122-199 (203)
338 KOG1586 Protein required for f 86.5 28 0.00061 32.5 21.0 87 639-727 130-227 (288)
339 KOG1308 Hsp70-interacting prot 86.3 0.54 1.2E-05 45.9 2.6 119 669-792 125-244 (377)
340 PF13374 TPR_10: Tetratricopep 86.2 1.5 3.4E-05 28.1 4.2 27 730-756 4-30 (42)
341 PF13374 TPR_10: Tetratricopep 86.2 1.7 3.6E-05 27.9 4.3 30 764-793 3-32 (42)
342 PF07575 Nucleopor_Nup85: Nup8 86.0 63 0.0014 36.1 18.9 30 413-442 404-433 (566)
343 COG3947 Response regulator con 85.6 36 0.00079 33.0 16.2 55 350-405 285-339 (361)
344 KOG4814 Uncharacterized conser 85.5 8.8 0.00019 41.2 10.8 73 732-805 398-470 (872)
345 smart00028 TPR Tetratricopepti 84.6 1.7 3.7E-05 25.3 3.6 27 766-792 4-30 (34)
346 PF07721 TPR_4: Tetratricopept 84.5 1.4 2.9E-05 25.0 2.7 23 765-787 3-25 (26)
347 PF07035 Mic1: Colon cancer-as 84.4 30 0.00064 30.9 15.4 38 225-262 15-52 (167)
348 COG1747 Uncharacterized N-term 84.2 60 0.0013 34.3 25.3 95 553-651 65-159 (711)
349 KOG2066 Vacuolar assembly/sort 83.9 78 0.0017 35.4 29.0 77 175-255 362-439 (846)
350 PRK10941 hypothetical protein; 83.7 7.6 0.00017 37.9 9.2 63 735-798 188-250 (269)
351 KOG2396 HAT (Half-A-TPR) repea 83.5 64 0.0014 34.0 40.0 238 365-617 303-558 (568)
352 KOG0276 Vesicle coat complex C 83.3 17 0.00037 38.9 11.7 132 311-475 616-747 (794)
353 KOG4570 Uncharacterized conser 82.6 14 0.0003 36.0 10.0 100 131-232 61-163 (418)
354 KOG0376 Serine-threonine phosp 82.3 1.8 3.8E-05 44.7 4.4 97 665-766 11-109 (476)
355 COG5159 RPN6 26S proteasome re 82.2 25 0.00054 33.8 11.3 126 665-790 10-152 (421)
356 PF04097 Nic96: Nup93/Nic96; 82.1 94 0.002 35.0 22.4 28 555-582 325-355 (613)
357 PF02284 COX5A: Cytochrome c o 82.0 17 0.00036 28.9 8.4 60 222-282 28-87 (108)
358 TIGR03504 FimV_Cterm FimV C-te 81.5 2.6 5.6E-05 27.6 3.4 24 733-756 4-27 (44)
359 COG0790 FOG: TPR repeat, SEL1 81.0 63 0.0014 32.3 22.2 85 675-766 172-275 (292)
360 KOG0890 Protein kinase of the 80.8 1.8E+02 0.0039 37.5 34.9 320 209-548 1388-1731(2382)
361 cd00923 Cyt_c_Oxidase_Va Cytoc 80.8 13 0.00028 29.2 7.4 45 711-755 25-69 (103)
362 PF07575 Nucleopor_Nup85: Nup8 80.8 1E+02 0.0022 34.5 19.0 31 739-769 506-536 (566)
363 cd00923 Cyt_c_Oxidase_Va Cytoc 80.4 12 0.00025 29.4 7.0 62 220-282 23-84 (103)
364 COG1747 Uncharacterized N-term 80.3 84 0.0018 33.3 28.4 53 741-795 359-411 (711)
365 COG3947 Response regulator con 80.1 61 0.0013 31.5 15.9 61 731-792 282-342 (361)
366 PRK11619 lytic murein transgly 80.0 1.1E+02 0.0024 34.5 38.3 447 47-521 34-513 (644)
367 KOG1308 Hsp70-interacting prot 79.0 1.9 4E-05 42.4 3.1 115 637-756 127-243 (377)
368 KOG3364 Membrane protein invol 79.0 33 0.00071 29.0 9.7 66 692-758 31-101 (149)
369 KOG0276 Vesicle coat complex C 79.0 17 0.00036 38.9 10.0 46 425-476 648-693 (794)
370 smart00028 TPR Tetratricopepti 78.7 3.2 7E-05 24.1 3.3 28 730-757 3-30 (34)
371 PF11207 DUF2989: Protein of u 78.6 20 0.00043 32.9 9.2 21 553-573 177-197 (203)
372 COG4455 ImpE Protein of avirul 78.0 12 0.00025 34.5 7.5 64 695-760 3-67 (273)
373 PF04097 Nic96: Nup93/Nic96; 77.8 1.3E+02 0.0028 34.0 24.6 42 244-286 116-157 (613)
374 COG4455 ImpE Protein of avirul 77.7 31 0.00067 31.9 10.0 55 631-686 8-63 (273)
375 PF07721 TPR_4: Tetratricopept 77.4 3.1 6.7E-05 23.5 2.6 21 732-752 5-25 (26)
376 PF14561 TPR_20: Tetratricopep 76.1 14 0.00029 29.1 6.7 55 726-780 20-75 (90)
377 TIGR03504 FimV_Cterm FimV C-te 76.0 4.4 9.4E-05 26.6 3.2 24 768-791 4-27 (44)
378 PHA02537 M terminase endonucle 75.3 66 0.0014 30.5 12.0 37 656-693 82-119 (230)
379 PF10579 Rapsyn_N: Rapsyn N-te 74.6 10 0.00022 28.4 5.2 47 740-786 18-66 (80)
380 PRK15180 Vi polysaccharide bio 74.3 1.2E+02 0.0025 31.8 31.1 120 251-374 301-421 (831)
381 PHA02875 ankyrin repeat protei 74.3 1.2E+02 0.0027 32.1 16.3 17 246-262 72-88 (413)
382 KOG0376 Serine-threonine phosp 72.5 8.4 0.00018 40.0 5.9 100 634-739 14-116 (476)
383 COG4976 Predicted methyltransf 72.4 8.4 0.00018 35.6 5.2 57 702-760 4-61 (287)
384 PF12862 Apc5: Anaphase-promot 72.4 13 0.00027 29.5 5.9 55 739-793 9-71 (94)
385 KOG4279 Serine/threonine prote 72.3 1.7E+02 0.0037 32.7 16.0 36 670-707 299-334 (1226)
386 TIGR02508 type_III_yscG type I 72.2 31 0.00067 27.3 7.4 78 673-757 20-97 (115)
387 PF14853 Fis1_TPR_C: Fis1 C-te 72.2 12 0.00026 25.8 4.8 28 733-760 6-33 (53)
388 PF02284 COX5A: Cytochrome c o 72.0 49 0.0011 26.4 9.4 40 472-511 33-72 (108)
389 PF10579 Rapsyn_N: Rapsyn N-te 71.4 10 0.00022 28.5 4.5 46 705-750 18-65 (80)
390 PF00637 Clathrin: Region in C 69.9 2.5 5.5E-05 36.8 1.5 51 247-297 15-65 (143)
391 PRK10941 hypothetical protein; 69.5 51 0.0011 32.3 10.4 63 696-760 184-247 (269)
392 TIGR02508 type_III_yscG type I 68.1 51 0.0011 26.2 7.8 79 184-269 20-98 (115)
393 PF00637 Clathrin: Region in C 67.4 3.6 7.7E-05 35.9 2.0 54 280-333 13-66 (143)
394 PF10255 Paf67: RNA polymerase 65.8 30 0.00064 36.0 8.3 61 696-756 125-192 (404)
395 KOG0991 Replication factor C, 65.6 1.2E+02 0.0027 28.5 11.8 36 272-308 237-272 (333)
396 PHA02875 ankyrin repeat protei 65.3 1.9E+02 0.0042 30.7 15.9 148 281-449 72-230 (413)
397 PF04910 Tcf25: Transcriptiona 65.2 1.8E+02 0.0038 30.2 19.6 135 657-793 39-223 (360)
398 KOG4521 Nuclear pore complex, 64.9 1.1E+02 0.0023 36.1 12.7 79 660-745 985-1071(1480)
399 COG5187 RPN7 26S proteasome re 63.7 1.5E+02 0.0033 28.9 13.6 97 658-756 115-220 (412)
400 KOG1464 COP9 signalosome, subu 62.2 1.5E+02 0.0033 28.5 16.8 120 567-686 40-173 (440)
401 PF07163 Pex26: Pex26 protein; 61.9 98 0.0021 30.1 10.1 87 421-507 90-181 (309)
402 PRK13800 putative oxidoreducta 61.7 3.5E+02 0.0075 32.4 26.4 261 517-806 633-895 (897)
403 KOG2063 Vacuolar assembly/sort 61.7 3.2E+02 0.0069 32.0 16.6 27 206-232 506-532 (877)
404 KOG2063 Vacuolar assembly/sort 61.2 3.2E+02 0.007 31.9 25.0 39 388-426 600-638 (877)
405 PF07163 Pex26: Pex26 protein; 60.5 1E+02 0.0022 30.0 9.9 89 139-227 88-181 (309)
406 PF04190 DUF410: Protein of un 59.9 1.8E+02 0.0039 28.5 19.5 25 657-681 89-113 (260)
407 COG4941 Predicted RNA polymera 59.8 1.7E+02 0.0037 29.3 11.4 118 639-760 272-397 (415)
408 KOG2908 26S proteasome regulat 59.1 1.1E+02 0.0023 30.7 10.1 65 639-703 91-166 (380)
409 PF08311 Mad3_BUB1_I: Mad3/BUB 58.8 85 0.0018 26.5 8.6 43 746-788 81-124 (126)
410 PRK13342 recombination factor 58.6 2.5E+02 0.0054 29.8 16.9 85 706-790 243-332 (413)
411 KOG3807 Predicted membrane pro 58.5 1.2E+02 0.0027 30.0 10.3 147 627-789 188-337 (556)
412 PF11846 DUF3366: Domain of un 57.8 50 0.0011 30.5 7.8 35 724-758 140-174 (193)
413 PF08424 NRDE-2: NRDE-2, neces 57.2 2.3E+02 0.0049 28.9 17.6 116 675-794 48-185 (321)
414 PF07720 TPR_3: Tetratricopept 55.8 41 0.00089 20.9 4.5 19 767-785 5-23 (36)
415 PF13929 mRNA_stabil: mRNA sta 55.6 2.1E+02 0.0047 28.1 15.9 59 446-504 199-258 (292)
416 PF13934 ELYS: Nuclear pore co 55.3 1.9E+02 0.0042 27.5 11.8 124 661-798 79-204 (226)
417 PF12862 Apc5: Anaphase-promot 55.2 42 0.00091 26.5 5.9 53 704-756 9-69 (94)
418 KOG4077 Cytochrome c oxidase, 54.4 89 0.0019 26.1 7.3 44 713-756 69-112 (149)
419 smart00386 HAT HAT (Half-A-TPR 54.3 32 0.00069 20.0 4.1 28 742-770 1-28 (33)
420 PF14689 SPOB_a: Sensor_kinase 53.4 35 0.00075 24.5 4.6 28 763-790 23-50 (62)
421 KOG2659 LisH motif-containing 53.2 1.5E+02 0.0033 27.8 9.7 101 654-756 22-131 (228)
422 PF08311 Mad3_BUB1_I: Mad3/BUB 52.2 94 0.002 26.3 7.8 45 710-754 80-125 (126)
423 KOG2582 COP9 signalosome, subu 51.1 2.8E+02 0.0062 28.2 16.8 127 132-267 73-211 (422)
424 PF13934 ELYS: Nuclear pore co 50.9 2.3E+02 0.0049 27.0 14.3 104 137-251 79-184 (226)
425 PF11817 Foie-gras_1: Foie gra 50.6 61 0.0013 31.5 7.4 57 733-789 183-244 (247)
426 KOG0545 Aryl-hydrocarbon recep 50.4 2.2E+02 0.0048 27.1 10.1 95 665-760 185-296 (329)
427 COG4976 Predicted methyltransf 50.2 43 0.00093 31.3 5.6 57 667-727 4-61 (287)
428 KOG0687 26S proteasome regulat 49.9 2.8E+02 0.0061 27.8 15.9 96 659-756 105-209 (393)
429 PRK13800 putative oxidoreducta 49.3 5.4E+02 0.012 30.9 28.8 261 481-773 632-894 (897)
430 KOG0687 26S proteasome regulat 48.6 2.9E+02 0.0064 27.6 15.5 17 422-438 112-128 (393)
431 PF00244 14-3-3: 14-3-3 protei 48.3 2.6E+02 0.0056 26.9 13.8 58 559-616 6-64 (236)
432 COG0735 Fur Fe2+/Zn2+ uptake r 48.2 1.1E+02 0.0024 26.7 7.8 60 717-777 10-69 (145)
433 KOG0403 Neoplastic transformat 47.7 3.6E+02 0.0077 28.3 26.3 62 696-760 512-575 (645)
434 PF11663 Toxin_YhaV: Toxin wit 47.2 18 0.00039 30.4 2.6 31 669-701 106-136 (140)
435 PF11846 DUF3366: Domain of un 46.9 51 0.0011 30.5 6.0 41 679-721 132-172 (193)
436 PF09670 Cas_Cas02710: CRISPR- 46.8 2.2E+02 0.0047 29.8 11.1 52 635-687 142-198 (379)
437 PRK12798 chemotaxis protein; R 46.5 3.7E+02 0.008 28.1 21.4 228 523-760 85-327 (421)
438 PF14689 SPOB_a: Sensor_kinase 46.0 53 0.0011 23.5 4.6 22 698-719 28-49 (62)
439 PF15297 CKAP2_C: Cytoskeleton 45.8 2E+02 0.0044 29.0 9.9 63 710-774 120-186 (353)
440 PF14561 TPR_20: Tetratricopep 45.5 1.5E+02 0.0032 23.3 9.5 53 691-743 20-73 (90)
441 KOG1464 COP9 signalosome, subu 45.2 2.9E+02 0.0064 26.6 23.9 247 359-613 42-327 (440)
442 KOG4077 Cytochrome c oxidase, 44.8 1.4E+02 0.003 25.0 7.1 46 223-268 68-113 (149)
443 PF09670 Cas_Cas02710: CRISPR- 44.4 3.6E+02 0.0079 28.2 12.3 54 598-652 140-198 (379)
444 PF09477 Type_III_YscG: Bacter 44.0 1.7E+02 0.0038 23.7 9.3 75 673-754 21-95 (116)
445 COG4941 Predicted RNA polymera 43.7 3.6E+02 0.0077 27.2 12.1 116 603-721 270-393 (415)
446 PF11817 Foie-gras_1: Foie gra 43.4 1.2E+02 0.0027 29.3 8.2 58 697-754 182-244 (247)
447 KOG0530 Protein farnesyltransf 43.2 3.2E+02 0.0069 26.5 13.8 86 673-760 93-179 (318)
448 COG5159 RPN6 26S proteasome re 43.1 3.3E+02 0.0072 26.6 21.9 95 662-756 129-234 (421)
449 PF09477 Type_III_YscG: Bacter 42.9 1.8E+02 0.004 23.6 8.5 78 184-268 21-98 (116)
450 smart00777 Mad3_BUB1_I Mad3/BU 42.4 1.4E+02 0.0031 25.1 7.2 40 712-751 82-122 (125)
451 PF08424 NRDE-2: NRDE-2, neces 42.1 3.9E+02 0.0084 27.2 20.1 58 469-528 51-108 (321)
452 KOG0551 Hsp90 co-chaperone CNS 42.0 1.3E+02 0.0028 30.1 7.7 84 634-719 91-179 (390)
453 KOG3824 Huntingtin interacting 41.7 50 0.0011 32.2 4.9 61 702-765 125-186 (472)
454 KOG0128 RNA-binding protein SA 40.7 6.2E+02 0.013 29.1 35.9 50 671-721 475-525 (881)
455 cd00280 TRFH Telomeric Repeat 40.1 2.6E+02 0.0056 25.4 8.6 14 674-687 85-98 (200)
456 KOG0686 COP9 signalosome, subu 39.8 3.2E+02 0.007 28.3 10.2 62 659-721 151-215 (466)
457 KOG0403 Neoplastic transformat 39.4 4.8E+02 0.01 27.4 30.1 57 664-723 515-573 (645)
458 PF15297 CKAP2_C: Cytoskeleton 38.3 2.2E+02 0.0048 28.8 8.8 64 639-704 119-186 (353)
459 cd08819 CARD_MDA5_2 Caspase ac 38.1 1.9E+02 0.0041 22.5 6.8 38 531-573 48-85 (88)
460 PF11848 DUF3368: Domain of un 38.0 1.2E+02 0.0027 20.3 5.1 26 148-173 16-41 (48)
461 PF11848 DUF3368: Domain of un 37.5 1.3E+02 0.0027 20.2 5.1 19 218-236 16-34 (48)
462 KOG0292 Vesicle coat complex C 37.1 3.6E+02 0.0079 31.1 10.9 155 595-791 626-781 (1202)
463 KOG2908 26S proteasome regulat 35.8 3.2E+02 0.007 27.5 9.3 72 667-738 84-166 (380)
464 KOG0890 Protein kinase of the 35.6 1.2E+03 0.026 30.9 44.6 149 280-438 1389-1542(2382)
465 KOG2297 Predicted translation 35.4 4.6E+02 0.0099 26.0 20.8 21 379-399 321-341 (412)
466 PRK13342 recombination factor 35.1 5.8E+02 0.012 27.1 20.1 54 671-724 243-301 (413)
467 PRK10564 maltose regulon perip 34.6 92 0.002 30.7 5.6 30 696-725 260-289 (303)
468 KOG2659 LisH motif-containing 34.6 4E+02 0.0088 25.2 12.0 100 620-719 22-129 (228)
469 PRK10564 maltose regulon perip 34.5 71 0.0015 31.4 4.8 29 243-271 261-289 (303)
470 COG2912 Uncharacterized conser 34.4 1.9E+02 0.004 28.2 7.5 62 697-760 185-247 (269)
471 PF13762 MNE1: Mitochondrial s 34.2 3.2E+02 0.0068 23.8 10.5 80 452-531 42-127 (145)
472 PF09454 Vps23_core: Vps23 cor 33.9 80 0.0017 22.9 3.9 50 726-776 6-55 (65)
473 KOG4567 GTPase-activating prot 33.8 4.8E+02 0.01 26.0 10.0 42 679-720 264-305 (370)
474 PF10255 Paf67: RNA polymerase 33.7 2E+02 0.0043 30.2 8.1 125 660-791 124-269 (404)
475 PRK09462 fur ferric uptake reg 33.5 2.6E+02 0.0057 24.4 8.0 60 684-744 8-68 (148)
476 cd00280 TRFH Telomeric Repeat 33.4 3E+02 0.0066 25.0 8.0 22 421-442 118-139 (200)
477 COG5187 RPN7 26S proteasome re 33.0 4.9E+02 0.011 25.6 14.2 66 414-479 115-185 (412)
478 COG0735 Fur Fe2+/Zn2+ uptake r 33.0 2.4E+02 0.0052 24.6 7.5 57 126-183 13-69 (145)
479 cd02680 MIT_calpain7_2 MIT: do 32.9 79 0.0017 23.7 3.8 32 709-756 3-34 (75)
480 PF02184 HAT: HAT (Half-A-TPR) 32.2 1.1E+02 0.0023 18.6 3.5 21 674-696 3-23 (32)
481 TIGR01228 hutU urocanate hydra 31.6 2.5E+02 0.0053 29.9 8.2 53 670-723 357-423 (545)
482 KOG0292 Vesicle coat complex C 31.5 7.8E+02 0.017 28.6 12.3 59 707-765 1061-1121(1202)
483 cd02679 MIT_spastin MIT: domai 30.9 1.1E+02 0.0023 23.3 4.3 45 740-791 20-67 (79)
484 smart00777 Mad3_BUB1_I Mad3/BU 30.4 3.4E+02 0.0073 23.0 9.2 44 745-788 80-124 (125)
485 PF09454 Vps23_core: Vps23 cor 30.0 1.7E+02 0.0036 21.3 5.0 49 202-251 6-54 (65)
486 KOG0128 RNA-binding protein SA 29.9 9.2E+02 0.02 27.9 36.7 82 704-785 473-556 (881)
487 PF11663 Toxin_YhaV: Toxin wit 29.7 64 0.0014 27.3 3.2 21 113-133 109-129 (140)
488 KOG2581 26S proteasome regulat 29.5 6.7E+02 0.015 26.1 11.2 152 657-808 125-292 (493)
489 KOG1310 WD40 repeat protein [G 29.2 2E+02 0.0044 30.7 7.2 31 764-794 446-476 (758)
490 KOG1114 Tripeptidyl peptidase 29.1 1E+03 0.022 28.1 15.1 71 712-782 1215-1286(1304)
491 PF14669 Asp_Glu_race_2: Putat 28.8 4.6E+02 0.01 24.1 14.9 56 419-474 137-206 (233)
492 KOG4567 GTPase-activating prot 28.1 5.9E+02 0.013 25.4 9.5 42 225-266 264-305 (370)
493 KOG2422 Uncharacterized conser 28.0 8.4E+02 0.018 26.8 20.5 213 217-464 251-498 (665)
494 PF10516 SHNi-TPR: SHNi-TPR; 27.7 1.1E+02 0.0024 19.3 3.3 26 730-755 3-28 (38)
495 KOG2297 Predicted translation 27.5 6.3E+02 0.014 25.2 21.5 162 564-750 176-343 (412)
496 KOG0686 COP9 signalosome, subu 26.8 7.5E+02 0.016 25.8 14.5 157 522-686 153-332 (466)
497 PF13929 mRNA_stabil: mRNA sta 26.7 6.4E+02 0.014 25.0 21.2 118 671-788 141-263 (292)
498 COG4259 Uncharacterized protei 26.5 2.5E+02 0.0054 22.4 5.5 48 710-757 54-101 (121)
499 COG5108 RPO41 Mitochondrial DN 26.2 4.6E+02 0.01 29.1 9.3 104 419-525 33-144 (1117)
500 KOG2422 Uncharacterized conser 25.6 9.3E+02 0.02 26.5 18.0 156 639-794 254-450 (665)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.3e-85 Score=755.18 Aligned_cols=671 Identities=20% Similarity=0.266 Sum_probs=605.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH
Q 046719 101 FTNILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAV 180 (808)
Q Consensus 101 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (808)
..+.++..|++.|++++|..+|+.|.+.|.+|+..+|..++.+|.+.+.++.|..++..+.+.++.++...+|.++..|+
T Consensus 53 ~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~ 132 (857)
T PLN03077 53 DSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFV 132 (857)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 35678888999999999999999999888888999999999999999999999999999999888889999999999999
Q ss_pred hcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 046719 181 KIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSA 260 (808)
Q Consensus 181 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 260 (808)
+.|+++.|.++|++|. .||..+||.+|.+|++.|++++|+++|++|...|+.||..||++++.+|++.++++.+.+
T Consensus 133 ~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 133 RFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred hCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 9999999999999985 468889999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 046719 261 LRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGF 340 (808)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 340 (808)
++..|.+.|..|+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|++++.+|++.|++++|.++|++|...|+
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999998863 6888999999999999999999999999999999
Q ss_pred CcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046719 341 RINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTL 420 (808)
Q Consensus 341 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 420 (808)
.||..+|+.++.++++.|+.+.|.+++..+.+.|+.||..+|++++.+|++.|++++|.++|++|.. ||..+|+.+
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~l 360 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAM 360 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998863 688899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 046719 421 IDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKL 500 (808)
Q Consensus 421 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 500 (808)
|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+++|++.|++
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 046719 501 LEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQI 580 (808)
Q Consensus 501 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 580 (808)
++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+
T Consensus 441 ~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 441 DKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred HHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 999999998864 4788899999999999999999999999976 58899999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHH
Q 046719 581 TSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLL 659 (808)
Q Consensus 581 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~ 659 (808)
.+.|+.+|..++++|+++|++.|++++|.++|+++ .||..+|+.++.+|++.| .++|.++|++|.+.|+.||..
T Consensus 516 ~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~ 590 (857)
T PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590 (857)
T ss_pred HHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999999999999886 588999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMV-DQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGY 738 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 738 (808)
+|+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++.+|++.|++++|.+++++|. +.||..+|..|+.+|
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac 667 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNAC 667 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHH
Confidence 99999999999999999999999998 67889999999999999999999999999998873 789999999999999
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 046719 739 CNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 739 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 797 (808)
...|+.+.|....+++++..|. +...|..|.+.|...|+|++|.++.+.|.+.+.+.-
T Consensus 668 ~~~~~~e~~e~~a~~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~ 725 (857)
T PLN03077 668 RIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725 (857)
T ss_pred HHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCC
Confidence 8899999998888888887766 778888888999999999999999999998876643
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.3e-85 Score=752.30 Aligned_cols=673 Identities=19% Similarity=0.302 Sum_probs=638.3
Q ss_pred hhhHHHHHHHHhCCCchHHHHHHHHHHhcCCCCCCChhhHHhhhhccCCCCCccHHHHHHHHHHcCCChhHHHHHHHHHH
Q 046719 47 NEQVRKIRILFQNNRTEAAQSLIKSIVLSNASPFTSPHELFSLFSVSSPYYKPTFTNILLSILSSAKLPSEALQLYASTK 126 (808)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 126 (808)
......+..+++.|++++|..+|+.+..... +++...+..++..|...+.++.|..++..+.
T Consensus 52 ~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 113 (857)
T PLN03077 52 HDSNSQLRALCSHGQLEQALKLLESMQELRV------------------PVDEDAYVALFRLCEWKRAVEEGSRVCSRAL 113 (857)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC------------------CCChhHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 3456678999999999999999998765321 1123334567888999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhh
Q 046719 127 ADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFV 206 (808)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 206 (808)
+.+..++...+|.|+..|++.|+++.|+.+|++|. .||..+||.+|.+|++.|++++|+++|++|...|+.||..+
T Consensus 114 ~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t 189 (857)
T PLN03077 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYT 189 (857)
T ss_pred HcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 99998999999999999999999999999999996 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 046719 207 YNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCK 286 (808)
Q Consensus 207 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 286 (808)
|+.++.+|+..+++..+.+++..|.+.|+.||..+|++||.+|++.|++++|..+|++| ..||.++||.+|.+|++
T Consensus 190 ~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m----~~~d~~s~n~li~~~~~ 265 (857)
T PLN03077 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFE 265 (857)
T ss_pred HHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC----CCCCcchhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999 56899999999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHH
Q 046719 287 AKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEI 366 (808)
Q Consensus 287 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 366 (808)
.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++
T Consensus 266 ~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v 345 (857)
T PLN03077 266 NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345 (857)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 046719 367 VGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVS 446 (808)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 446 (808)
|++|.. ||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.
T Consensus 346 f~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 421 (857)
T PLN03077 346 FSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421 (857)
T ss_pred HhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCC
Confidence 999864 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHH
Q 046719 447 PNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLI 526 (808)
Q Consensus 447 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li 526 (808)
|+..+|+.|+++|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..+|+.++
T Consensus 422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL 496 (857)
T PLN03077 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAAL 496 (857)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHH
Confidence 9999999999999999999999999999964 6889999999999999999999999999986 5899999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHH
Q 046719 527 DGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQ 606 (808)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 606 (808)
.+|++.|+++.+.+++..+.+.|+.++..+++.|+++|++.|++++|.++|+.+ .||..+||+||.+|++.|+.+
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999999999987 579999999999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 046719 607 KCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEML-QINLVPDLLVYNALIHCYAEHGDVQKALVLHSEM 684 (808)
Q Consensus 607 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 684 (808)
+|+++|++|.+.|+.||..||+.++.+|.+.| +++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++|
T Consensus 572 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 99999999999999999999999999999999 999999999999 6899999999999999999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 046719 685 VDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSF 763 (808)
Q Consensus 685 ~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 763 (808)
++.||..+|++|+.+|...|+.+.+....+++.+ +.|+ ...|..+.+.|...|+|++|.++.+.|.+.|+++++
T Consensus 652 ---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 652 ---PITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred ---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCC
Confidence 3789999999999999999999999999999988 6674 666778899999999999999999999999988766
Q ss_pred H
Q 046719 764 C 764 (808)
Q Consensus 764 ~ 764 (808)
.
T Consensus 727 g 727 (857)
T PLN03077 727 G 727 (857)
T ss_pred C
Confidence 4
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.4e-71 Score=622.37 Aligned_cols=546 Identities=18% Similarity=0.272 Sum_probs=495.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHH
Q 046719 131 RLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFR-PDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNV 209 (808)
Q Consensus 131 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 209 (808)
.++...+..++..|.+.|++++|+++|++|...|+. ++...++.++..|.+.|.+++|..+|+.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 456667888999999999999999999999998864 6777888899999999999999999999864 89999999
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC
Q 046719 210 LISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKR 289 (808)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 289 (808)
++.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHh--CCCCcChhcHHHHHHHHHhcCChHHHHHHH
Q 046719 290 MEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSG--RGFRINSYTCSILLNALCKEGKVEIAEEIV 367 (808)
Q Consensus 290 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (808)
+++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999976 678999999999999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 046719 368 GKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSP 447 (808)
Q Consensus 368 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 447 (808)
+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHH
Q 046719 448 NVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLID 527 (808)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 527 (808)
|..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 046719 528 GSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQK 607 (808)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 607 (808)
+|++.|++++|.++|++|.+.|+.||..+|+.++..|. ++++++..+.+.+.... + .......+..++
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n~w~~~ 830 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIENKWTSW 830 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccccchHHH
Confidence 99999999999999999999999999999999987654 24666666555444311 0 011112234467
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 046719 608 CLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVD 686 (808)
Q Consensus 608 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 686 (808)
|+.+|++|.+.|+.||..||+.++.++++.+ ...+..+++.|...+..|+..+|+++++++++. .++|..++++|.+
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 9999999999999999999999997776777 888999999988888889999999999988432 4689999999999
Q ss_pred CCCCCCHH
Q 046719 687 QGIRPDKM 694 (808)
Q Consensus 687 ~g~~pd~~ 694 (808)
.|+.|+..
T Consensus 909 ~Gi~p~~~ 916 (1060)
T PLN03218 909 LGVVPSVS 916 (1060)
T ss_pred cCCCCCcc
Confidence 99999875
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.6e-71 Score=618.73 Aligned_cols=547 Identities=17% Similarity=0.276 Sum_probs=488.3
Q ss_pred CCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCC-CCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHH
Q 046719 165 FRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRT-RPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYN 243 (808)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 243 (808)
..++...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++.+|++.|.+++|..+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 445777888889999999999999999999998886 46777888899999999999999999998874 8999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCC
Q 046719 244 TLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCG 323 (808)
Q Consensus 244 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 323 (808)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 046719 324 DGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIE--NGLVPDEVMFNTIVSGYCRTGDLNRAMLA 401 (808)
Q Consensus 324 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 401 (808)
++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+++|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999976 57889999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 046719 402 IQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMK 481 (808)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 481 (808)
|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 046719 482 PNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALI 561 (808)
Q Consensus 482 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 561 (808)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HH
Q 046719 562 NGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IV 640 (808)
Q Consensus 562 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~ 640 (808)
.+|++.|++++|.+++.+|.+.|+.||..+|++++..|. +++++|..+.+.+.... + .......+ .+
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n~w~~ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIENKWTS 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccccchHH
Confidence 999999999999999999999999999999999987654 34666666655444211 0 01111223 56
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 046719 641 AVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMK 720 (808)
Q Consensus 641 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 720 (808)
.|..+|++|++.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|+.|+.++.+. .++|..++++|.
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 799999999999999999999999988888899999999999998888888999999999988543 468999999999
Q ss_pred HCCCCCCHH
Q 046719 721 VKGLIPKAD 729 (808)
Q Consensus 721 ~~g~~p~~~ 729 (808)
+.|+.|+..
T Consensus 908 ~~Gi~p~~~ 916 (1060)
T PLN03218 908 SLGVVPSVS 916 (1060)
T ss_pred HcCCCCCcc
Confidence 999999754
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-63 Score=558.52 Aligned_cols=573 Identities=19% Similarity=0.277 Sum_probs=387.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHH
Q 046719 131 RLSLDSINVLLECLVRCNQYDRALDLFDEIVCMG-FRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNV 209 (808)
Q Consensus 131 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 209 (808)
..+..+|+.++..|.+.|++++|+.+|++|...+ +.||..+|+.++.+|.+.|+++.|.+++..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3455577888888888888888888887777654 567777777777777777777777777777777777777777777
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC
Q 046719 210 LISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKR 289 (808)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 289 (808)
++++|++.|++++|.++|++|.+ ||.++|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 77777777777777777777753 56677777777777777777777777777666666666666666666666666
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHH
Q 046719 290 MEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGK 369 (808)
Q Consensus 290 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 369 (808)
.+.+.+++..+.+.|+.||..+|++ |+.+|++.|++++|.++|+.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~-----------------------------------Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCA-----------------------------------LIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHH-----------------------------------HHHHHHHCCCHHHHHHHHHh
Confidence 6666666666666665555555555 55555555555555555555
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 046719 370 EIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNV 449 (808)
Q Consensus 370 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 449 (808)
|.+ +|.++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||.
T Consensus 285 m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 285 MPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred CCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 532 4777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHH
Q 046719 450 KTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGS 529 (808)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 529 (808)
.+|+.|+++|++.|++++|.++|++|. .||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 888888888888888888888888875 3577777777777777777777777777777777777777777777777
Q ss_pred HhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 046719 530 CTMGRIKDAFKFFDEMVK-REMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKC 608 (808)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 608 (808)
++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 777777777777777765 366777777777777777777777777766654 3466667777777777777777666
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 046719 609 LELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQG 688 (808)
Q Consensus 609 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 688 (808)
..+++++.+. . +.+..+|+.|+++|++.|++++|.+++++|.+.|
T Consensus 514 ~~~~~~l~~~--~---------------------------------p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 514 RLAAEKLYGM--G---------------------------------PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHHhCC--C---------------------------------CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 6666665431 1 2234567777778888888888888888888777
Q ss_pred CCCCH-HHHHHH-------HHHHHhc----CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH--H
Q 046719 689 IRPDK-MTYNSL-------IFGHLRE----GKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYRE--M 754 (808)
Q Consensus 689 ~~pd~-~~~~~l-------~~~~~~~----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~ 754 (808)
+.... .+|..+ +.....+ .-++...++..+|.+.|..|+......=+.- ...++.+..-.+ +
T Consensus 559 ~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~----~~~~~~~~~hsekla 634 (697)
T PLN03081 559 LSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDE----DEEKVSGRYHSEKLA 634 (697)
T ss_pred CccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccH----HHHHHHHHhccHHHH
Confidence 65322 232211 1000001 1134556677788888988875332110000 000111111000 1
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 755 FENGFIP-SFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 755 ~~~~~~~-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
+..|.-. .+..-..+..-+.-+|+-+.|.+++.++...
T Consensus 635 ~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r 673 (697)
T PLN03081 635 IAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKR 673 (697)
T ss_pred HHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcce
Confidence 1122210 1111123344456678888999988887653
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.7e-63 Score=557.23 Aligned_cols=471 Identities=21% Similarity=0.320 Sum_probs=370.6
Q ss_pred cHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHH
Q 046719 100 TFTNILLSILSSAKLPSEALQLYASTKADG-TRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQA 178 (808)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (808)
..++.++..+.+.|++++|+++|..|...+ ..|+..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.++.+
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 346778999999999999999999998764 6789999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 046719 179 AVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKV 258 (808)
Q Consensus 179 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 258 (808)
|++.|+++.|.++|++|. .||..+||.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+.+.+
T Consensus 168 y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 999999999999999995 4799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 046719 259 SALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGR 338 (808)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 338 (808)
.+++..+.+.|..+|..+|+.||.+|++.|++++|.++|++|.+ +|..+|++|+.+|++.|+.++|.++|++|.+.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999964 58888888888888888888888888888777
Q ss_pred CCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 046719 339 GFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFN 418 (808)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 418 (808)
|+.||..+|+.++.+|++.|++++|.+++..+.+.|+.||..+|++++++|++.|++++|.++|++|.+ ||..+|+
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n 395 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWN 395 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777643 4666677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHhc
Q 046719 419 TLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMEN-SGMKPNVVSYGSLINWLCKD 497 (808)
Q Consensus 419 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~ 497 (808)
.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 77777777777777777777766666666666666666666666666666666666654 45666666666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 046719 498 CKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDML 577 (808)
Q Consensus 498 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 577 (808)
|++++|.+++++| +..|+..+|++++.+|+..|+++.|..+++++.+.+ +.+..+|+.|+++|++.|++++|.+++
T Consensus 476 G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 476 GLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred CCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 6666666555543 244555555555555555555555555555554321 112445555555555555555555555
Q ss_pred HHHHhCCCC
Q 046719 578 PQITSSGLN 586 (808)
Q Consensus 578 ~~~~~~~~~ 586 (808)
+.|.+.|+.
T Consensus 552 ~~m~~~g~~ 560 (697)
T PLN03081 552 ETLKRKGLS 560 (697)
T ss_pred HHHHHcCCc
Confidence 555555543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.9e-43 Score=417.86 Aligned_cols=721 Identities=13% Similarity=0.057 Sum_probs=392.2
Q ss_pred hHHHHHHHHhCCCchHHHHHHHHHHhcCCCCCCChh-------------hHHhhhh--ccCCCCCccHHHHHHHHHHcCC
Q 046719 49 QVRKIRILFQNNRTEAAQSLIKSIVLSNASPFTSPH-------------ELFSLFS--VSSPYYKPTFTNILLSILSSAK 113 (808)
Q Consensus 49 ~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~ 113 (808)
.......+...|++++|...++.++...+....... +....+. ....|..+.....+...+...|
T Consensus 128 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 207 (899)
T TIGR02917 128 LALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG 207 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Confidence 444556667778888888877777665543221110 1111110 0112334445556666777788
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHH
Q 046719 114 LPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFD 193 (808)
Q Consensus 114 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 193 (808)
++++|...|....... +.+..++..++..+...|++++|...++.+.+..+. +...+......+...|++++|...|+
T Consensus 208 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~ 285 (899)
T TIGR02917 208 NIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQ 285 (899)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888888887777654 346667777777777788888888777777765443 22333333334455666666666666
Q ss_pred HhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 046719 194 GMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVS 273 (808)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 273 (808)
++.+.++. +...+..+...+...|++++|...|+.+.+... .+...+..+...+.+.|++++|...++.+.... +.+
T Consensus 286 ~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~ 362 (899)
T TIGR02917 286 DALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDD 362 (899)
T ss_pred HHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC
Confidence 66554321 222333344445555566666655555554422 234444455555555555555555555554432 223
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCC-------------
Q 046719 274 LVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGF------------- 340 (808)
Q Consensus 274 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------------- 340 (808)
...+..+...+.+.|++++|.++|+++.+... .+...+..+...+...|++++|.+.++.+.+.+.
T Consensus 363 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 441 (899)
T TIGR02917 363 PAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSY 441 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHH
Confidence 44555555555555555555555555544321 1333444444445555555555555554444322
Q ss_pred --------------------CcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 046719 341 --------------------RINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAML 400 (808)
Q Consensus 341 --------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 400 (808)
+.+..++..+...+...|++++|.+.|.++.+..+. +...+..++..+...|++++|..
T Consensus 442 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence 223444455555555555555555555555443322 33344445555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 046719 401 AIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGM 480 (808)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 480 (808)
.++++.+.+.. +..++..+...+...|+.++|..++.++.+.+. .+...+..++..|.+.|++++|..+++++... .
T Consensus 521 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~ 597 (899)
T TIGR02917 521 RFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADA-A 597 (899)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-C
Confidence 55555544322 444555555555555555555555555544322 23444455555555555555555555555443 2
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 046719 481 KPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNAL 560 (808)
Q Consensus 481 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 560 (808)
+.+...|..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|...|+++.+.. +.+..++..+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 3445555555555555666666666665555442 2244455555555555666666666665555432 2245555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-H
Q 046719 561 INGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-I 639 (808)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~ 639 (808)
+..+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...|+++... .|+..++..+...+...| .
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCH
Confidence 555666666666666666555543 234445555555666666666666666666553 233345555555555566 6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 046719 640 VAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDM 719 (808)
Q Consensus 640 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~ 719 (808)
++|.+.++++++.. +.+...++.++..|...|++++|.++|+++.+.. +++..+++.+++.+...|+ .+|+.+++++
T Consensus 753 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 66666666665543 3445555666666666666666666666666532 3344456666666666666 5566666666
Q ss_pred HHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046719 720 KVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEIS 790 (808)
Q Consensus 720 ~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 790 (808)
.+. .| ++.++..++.++...|++++|.++++++++.++. ++.++..++.+|.+.|++++|..++++|+
T Consensus 830 ~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 830 LKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred Hhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 552 23 3445556666666666666666666666666554 56666666666666666666666666654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.1e-42 Score=406.58 Aligned_cols=732 Identities=13% Similarity=0.049 Sum_probs=509.4
Q ss_pred hhhHHHHHHHHhCCCchHHHHHHHHHHhcCCCCC--------------CChhhHHhhhhc--cCCCCCccHHHHHHHHHH
Q 046719 47 NEQVRKIRILFQNNRTEAAQSLIKSIVLSNASPF--------------TSPHELFSLFSV--SSPYYKPTFTNILLSILS 110 (808)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~ 110 (808)
.......+.+...|++++|...+........... .........+.. ...|..+.....+...+.
T Consensus 91 ~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 170 (899)
T TIGR02917 91 QVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL 170 (899)
T ss_pred hhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 4456677889999999999988865432111110 011111222211 122344455566788899
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHH
Q 046719 111 SAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACE 190 (808)
Q Consensus 111 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 190 (808)
..|++++|..++..+.... +.+...+..+...+...|++++|...|+++....+. +...+..++..+...|++++|..
T Consensus 171 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~ 248 (899)
T TIGR02917 171 AENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN-NPAVLLALATILIEAGEFEEAEK 248 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998765 457788999999999999999999999999987665 78889999999999999999999
Q ss_pred HHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046719 191 IFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKV 270 (808)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 270 (808)
.++.+.+..+. +...+......+...|++++|...|+++.+.+.. +...+..+...+...|++++|...++.+.+..+
T Consensus 249 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 326 (899)
T TIGR02917 249 HADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAP 326 (899)
T ss_pred HHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999886543 3444555556677899999999999999887533 344555667788899999999999999987643
Q ss_pred CcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHH
Q 046719 271 EVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSIL 350 (808)
Q Consensus 271 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 350 (808)
.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|.+.|+++.+... .+...+..+
T Consensus 327 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 403 (899)
T TIGR02917 327 -NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQL 403 (899)
T ss_pred -CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHH
Confidence 456778888999999999999999999998764 34677889999999999999999999999987643 345566667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCC---------------------------------CCHhhHHHHHHHHHhcCCHHH
Q 046719 351 LNALCKEGKVEIAEEIVGKEIENGLV---------------------------------PDEVMFNTIVSGYCRTGDLNR 397 (808)
Q Consensus 351 ~~~~~~~g~~~~a~~~~~~~~~~~~~---------------------------------~~~~~~~~li~~~~~~g~~~~ 397 (808)
...+...|++++|.+.+..+.+..+. ++..+|..+...|...|++++
T Consensus 404 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 404 GISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHH
Confidence 77777778877777777776655432 133344444444555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046719 398 AMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMEN 477 (808)
Q Consensus 398 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 477 (808)
|...|+++.+.... +...+..+...+...|++++|.+.++.+.+... .+..++..+...+.+.|+.++|..+++++..
T Consensus 484 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 561 (899)
T TIGR02917 484 AREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561 (899)
T ss_pred HHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555554443221 333444444555555555555555555544322 2444555555555555566666665555544
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 046719 478 SGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTF 557 (808)
Q Consensus 478 ~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 557 (808)
.+ +.+...+..++..+.+.|++++|..+++.+.+.. +.+...|..++..+...|++++|+..|+.+.+.. +.+...+
T Consensus 562 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 638 (899)
T TIGR02917 562 LN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALAL 638 (899)
T ss_pred hC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 32 3344555556666666666666666666665542 3355566666666667777777777776666542 3345566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHc
Q 046719 558 NALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIRE 637 (808)
Q Consensus 558 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 637 (808)
..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|..+++.+.+.. +.+...+..+...+...
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 716 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQ 716 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHC
Confidence 666666667777777777777666542 2345666667777777777777777777776643 34555666666667777
Q ss_pred C-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 046719 638 G-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELV 716 (808)
Q Consensus 638 ~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~ 716 (808)
| +++|.+.|+++...+ |+..++..++.++.+.|++++|.+.++++.+. .+.+...+..++..|...|++++|..++
T Consensus 717 g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 717 KDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHY 793 (899)
T ss_pred CCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 7 777777777777753 44456666777777788888888888877774 2445567777888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 046719 717 NDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 717 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 796 (808)
+++.+.. ++++..+..++..+...|+ ++|+.+++++++..+. ++..+..++.++...|++++|..+++++++.+|.+
T Consensus 794 ~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 870 (899)
T TIGR02917 794 RTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870 (899)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 8887742 3456777788888888888 7788888888877655 66777788888888888888888888888888775
Q ss_pred Cc
Q 046719 797 WT 798 (808)
Q Consensus 797 ~~ 798 (808)
+.
T Consensus 871 ~~ 872 (899)
T TIGR02917 871 AA 872 (899)
T ss_pred hH
Confidence 44
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.3e-29 Score=297.90 Aligned_cols=650 Identities=11% Similarity=0.037 Sum_probs=452.8
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhH------------
Q 046719 105 LLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTY------------ 172 (808)
Q Consensus 105 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------ 172 (808)
.++.....++.+.|.+.+.++.... +.++.++..++..+.+.|+.++|...+++..+..+. +...+
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCc
Confidence 4566788899999999999998765 457888999999999999999999999999987655 33322
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHhhhCCCCCChh-hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046719 173 ----GKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVF-VYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVD 247 (808)
Q Consensus 173 ----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 247 (808)
....+.+.+.|++++|+..|+++.+.++ |+.. ............|+.++|++.|+++.+..+. +...+..+..
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ 189 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLAL 189 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 2334467889999999999999987643 2322 1111122223458999999999999887433 6667888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhCCChH
Q 046719 248 GYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDG-FTYSMLFDGYSKCGDGE 326 (808)
Q Consensus 248 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~ 326 (808)
.+.+.|++++|...++++...... +. ..+...++.+...+..++. ..+...+..+-.....+
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~-~~----------------~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~ 252 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAG-RD----------------AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVA 252 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCc-hH----------------HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHH
Confidence 899999999999999998653211 00 1111111222211111111 11112222222222334
Q ss_pred HHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046719 327 GVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQME 406 (808)
Q Consensus 327 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 406 (808)
.+...+.........|... .......+...|++++|+..|++.++..+. +...+..+...|.+.|++++|+..|++..
T Consensus 253 ~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 253 AARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555544332222211 122345566778888888888887776443 66677778888888888888888888877
Q ss_pred HCCCCCC-HHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 046719 407 NHGLAPN-CITF------------NTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILE 473 (808)
Q Consensus 407 ~~~~~~~-~~~~------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 473 (808)
+...... ...| ......+.+.|++++|+..++++++... .+...+..+...+...|++++|++.|+
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~ 409 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQ 409 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6543211 1111 1223456678888888888888887643 256667777888888888888888888
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--------cchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046719 474 EMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVL--------PNAQIYNMLIDGSCTMGRIKDAFKFFDEM 545 (808)
Q Consensus 474 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 545 (808)
+..+.. +.+...+..+...+. .++.++|...++.+...... .....+..+...+...|++++|++.|++.
T Consensus 410 ~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~A 487 (1157)
T PRK11447 410 QALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQR 487 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 887652 334555666666554 45678888777654322100 01223556677788899999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHH
Q 046719 546 VKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLR 625 (808)
Q Consensus 546 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 625 (808)
++.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...++.++|+..++.+......++..
T Consensus 488 l~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~ 565 (1157)
T PRK11447 488 LALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQ 565 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHH
Confidence 8863 3367778888889999999999999999988743 2244555555566778899999999988765432222221
Q ss_pred ---------hHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHH
Q 046719 626 ---------TYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKM 694 (808)
Q Consensus 626 ---------~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~ 694 (808)
.+..+...+...| .++|.++++. .+.+...+..+...+.+.|++++|+..|+++++. .| +..
T Consensus 566 ~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~ 638 (1157)
T PRK11447 566 ELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNAD 638 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH
Confidence 1223455677788 9999998872 3556667788999999999999999999999984 55 556
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-----HHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPS-----FCIYNE 768 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~ 768 (808)
.+..++..+...|++++|.+.++++.+ ..| +..++..++.++...|++++|..+++++++..++.+ ...+..
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~ 716 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRD 716 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHH
Confidence 899999999999999999999999887 445 456677889999999999999999999998654322 246667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 046719 769 LTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 769 l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
++..+...|++++|+..+++++.
T Consensus 717 ~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 717 AARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 78999999999999999999975
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.7e-29 Score=295.19 Aligned_cols=660 Identities=13% Similarity=0.051 Sum_probs=460.5
Q ss_pred cchhhhHHHHHHHHhCCCchHHHHHHHHHHhcCCCCCCChhhHHhhhhccCCCCCccHHHHHHHHHHcCCChhHHHHHHH
Q 046719 44 QERNEQVRKIRILFQNNRTEAAQSLIKSIVLSNASPFTSPHELFSLFSVSSPYYKPTFTNILLSILSSAKLPSEALQLYA 123 (808)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 123 (808)
.....++..++.-...++.+.|++.+.+++...+ .++.+...+...+...|+.++|...++
T Consensus 26 ~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p-------------------~~p~~~~~~~~~~l~~g~~~~A~~~l~ 86 (1157)
T PRK11447 26 TAQQQLLEQVRLGEATHREDLVRQSLYRLELIDP-------------------NNPDVIAARFRLLLRQGDSDGAQKLLD 86 (1157)
T ss_pred CHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCC-------------------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3445588889999999999999999998776544 345556667888899999999999999
Q ss_pred HHHhCCCCCCHHH----------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHH
Q 046719 124 STKADGTRLSLDS----------------INVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKR 187 (808)
Q Consensus 124 ~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 187 (808)
++.+..+ .+... ...+++.+.+.|++++|...|+.+...++.................|+.++
T Consensus 87 ~l~~~~P-~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~ 165 (1157)
T PRK11447 87 RLSQLAP-DSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPE 165 (1157)
T ss_pred HHHhhCC-CChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHH
Confidence 9988763 33332 244566789999999999999999876544222222122222334699999
Q ss_pred HHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046719 188 ACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKR 267 (808)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 267 (808)
|+..++++.+..+. +...+..+...+...|+.++|++.|+++.+.. +.. ...+...++.+..
T Consensus 166 A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~--~~~---------------~~aa~~~~~~l~~ 227 (1157)
T PRK11447 166 AINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSP--AGR---------------DAAAQLWYGQIKD 227 (1157)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC--Cch---------------HHHHHHHHHHHhc
Confidence 99999999987543 67788899999999999999999999997642 111 0111112222222
Q ss_pred CCCCcC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhc
Q 046719 268 DKVEVS-LVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYT 346 (808)
Q Consensus 268 ~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 346 (808)
.+..+. ...+...+..+-.....+.|...+..+......|+... ..+...+...|++++|+..|++.++... .+..+
T Consensus 228 ~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a 305 (1157)
T PRK11447 228 MPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEA 305 (1157)
T ss_pred cCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHH
Confidence 111111 11222222222233334455555555544322333221 2334556667777777777777776532 25566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhhH------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 046719 347 CSILLNALCKEGKVEIAEEIVGKEIENGLVPD-EVMF------------NTIVSGYCRTGDLNRAMLAIQQMENHGLAPN 413 (808)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 413 (808)
+..+...+.+.|++++|+..|++.++..+... ...| ......+.+.|++++|+..|+++.+.... +
T Consensus 306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~ 384 (1157)
T PRK11447 306 LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-D 384 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C
Confidence 66777777777777777777777776543221 1111 12244566788888888888888876433 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--------CCCHh
Q 046719 414 CITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGM--------KPNVV 485 (808)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--------~~~~~ 485 (808)
...+..+...+...|++++|++.|+++.+.... +...+..+...|. .++.++|...++.+..... .....
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 667777888888888888888888888876322 4555666666664 4567888887766533210 00122
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 046719 486 SYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLC 565 (808)
Q Consensus 486 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 565 (808)
.+..+...+...|++++|+..|++..+..+. +...+..+...+.+.|++++|...++++++.. +.+...+..+...+.
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3555667788899999999999998886433 56677888889999999999999999988753 335555555666677
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHH
Q 046719 566 KKGRVMEAEDMLPQITSSGLNPDVI---------TYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIR 636 (808)
Q Consensus 566 ~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 636 (808)
..++.++|...++.+......++.. .+..++..+...|+.++|..+++. .+++...+..+...+.+
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQ 615 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHH
Confidence 8889999999888765432222221 233456778899999999999882 24556667778888889
Q ss_pred cC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHH
Q 046719 637 EG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEVKE 714 (808)
Q Consensus 637 ~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~ 714 (808)
.| .++|.+.|+++++.. +.+...+..++.+|...|++++|++.++++.+. .|+ ..++..++.++...|++++|.+
T Consensus 616 ~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 99 999999999999864 456788899999999999999999999998873 554 4577789999999999999999
Q ss_pred HHHHHHHCCC--CC---CHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 715 LVNDMKVKGL--IP---KADTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 715 ~~~~~~~~g~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
++++++.... .| +...+..++..+...|++++|+..|++++.
T Consensus 693 ~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 693 TFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999987421 11 224566778899999999999999999975
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=9.2e-26 Score=253.82 Aligned_cols=644 Identities=11% Similarity=0.026 Sum_probs=439.9
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHH
Q 046719 109 LSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRA 188 (808)
Q Consensus 109 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 188 (808)
+...|++++|...|+...+..+. +..++..|...|.+.|++++|+..++++++..+. |...+..+. .+ +++++|
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~-n~~~~~~La-~i---~~~~kA 127 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG-DARLERSLA-AI---PVEVKS 127 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHHHHHHHH-Hh---ccChhH
Confidence 44559999999999999987754 5888999999999999999999999999987653 666665552 22 899999
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHH--------HHccCCHhHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChhHHH
Q 046719 189 CEIFDGMEKSRTRPNVFVYNVLISG--------FCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTL-VDGYCKVGEFEKVS 259 (808)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~a~ 259 (808)
..+|+++.+..+. +..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|+
T Consensus 128 ~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 128 VTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 9999999987543 55566666655 6555 55555555 3333344456555555 89999999999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHc-cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 046719 260 ALRERMKRDKVEVSLVMFNSLLGGFCK-AKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGR 338 (808)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 338 (808)
.+++++.+.++. +......+..+|.. .++ +++..+++. .+..+...+..++..|.+.|+.++|.++++++...
T Consensus 203 ~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 203 TLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 999999998654 45556667778887 477 888888653 23357888999999999999999999999997655
Q ss_pred CCC-cChhcHHHHHHHHHhcCChH-HHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 046719 339 GFR-INSYTCSILLNALCKEGKVE-IAEEIVGKEIENGLVPD-EVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCI 415 (808)
Q Consensus 339 ~~~-~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 415 (808)
... |...+|.-+ +.+.+... .|..-|.+- ..++ ......++..+.+.++++.+.++.. +.|...
T Consensus 277 ~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 343 (987)
T PRK09782 277 FTTDAQEKSWLYL---LSKYSANPVQALANYTVQ----FADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANE 343 (987)
T ss_pred ccCCCccHHHHHH---HHhccCchhhhccchhhh----hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcch
Confidence 332 333333333 33433332 111111110 0111 1123344777788888885554421 233333
Q ss_pred HHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-C-CCCCHhhHHHHH
Q 046719 416 TFNTLIDKF--CELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENS-G-MKPNVVSYGSLI 491 (808)
Q Consensus 416 ~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~-~~~~~~~~~~ll 491 (808)
.. .+... ...+...++.+.+..|.+... -+......+.....+.|+.++|.++|+..... + -..+......++
T Consensus 344 ~~--~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 344 ML--EERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred HH--HHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 21 22222 233566666666666665522 25555555555667788888888888887652 1 122344455666
Q ss_pred HHHHhcCC---HHHHHHH----------------------HHHHHhC-CC-Cc--chhHHHHHHHHHHhcCCHHHHHHHH
Q 046719 492 NWLCKDCK---LLEAEIV----------------------LKDMENR-GV-LP--NAQIYNMLIDGSCTMGRIKDAFKFF 542 (808)
Q Consensus 492 ~~~~~~~~---~~~A~~~----------------------~~~m~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~ 542 (808)
..|.+.+. ..++..+ +...... +. ++ +...|..+..++.. +++++|+..+
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 66666655 2222222 1122111 11 23 45667777777766 7888888877
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc
Q 046719 543 DEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKP 622 (808)
Q Consensus 543 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 622 (808)
.+.... .|+......+...+...|++++|...++++... +|+...+..+...+.+.|+.++|...+++..+.. ++
T Consensus 500 ~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~ 574 (987)
T PRK09782 500 LQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LG 574 (987)
T ss_pred HHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Cc
Confidence 777765 245444444455556888899998888887654 4445556677777888888888998888888753 22
Q ss_pred CHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 046719 623 SLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-KMTYNSLI 700 (808)
Q Consensus 623 ~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~ 700 (808)
+...+..+...+...| +++|...+++.++. .|+...+..+..++.+.|++++|+..+++.++ ..|+ ...++.++
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG 650 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALG 650 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 2333333333444557 88888888888875 45677888888888888999999999988888 4554 44788888
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 046719 701 FGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKL 779 (808)
Q Consensus 701 ~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 779 (808)
.++...|++++|+..++++++ ..| +...+..++.++...|++++|...++++++..|. +..+....++.+.+..++
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~ 727 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNF 727 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHH
Confidence 888888899999988888887 455 5677888888888899999999999988887665 667777888888888888
Q ss_pred hHHHHHHHHHHHcCCCCCc
Q 046719 780 KEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 780 ~~A~~~~~~~~~~~~~~~~ 798 (808)
+.|.+-+++....+++.|.
T Consensus 728 ~~a~~~~~r~~~~~~~~~a 746 (987)
T PRK09782 728 RRLHEEVGRRWTFSFDSSI 746 (987)
T ss_pred HHHHHHHHHHhhcCccchh
Confidence 8888888888888887773
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.98 E-value=3.3e-25 Score=249.34 Aligned_cols=615 Identities=11% Similarity=0.002 Sum_probs=445.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHh
Q 046719 142 ECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIR 221 (808)
Q Consensus 142 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 221 (808)
..+...|++++|+..|+++++..+. +..++..+...|...|++++|+...++..+..+ -|...+..+ ..+ ++++
T Consensus 52 ~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i---~~~~ 125 (987)
T PRK09782 52 LKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI---PVEV 125 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh---ccCh
Confidence 3344559999999999999998887 588999999999999999999999999998643 244444444 333 8999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH-HHHHHccCChhH
Q 046719 222 DAEKLFDEMCQRKLVPTRVTYNTLVDG--------YCKVGEFEKVSALRERMKRDKVEVSLVMFNSL-LGGFCKAKRMEE 292 (808)
Q Consensus 222 ~A~~~~~~m~~~~~~p~~~~~~~li~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~ 292 (808)
+|..+++++....+. +..++..+... |.+. ++|...++ .....+.|+..+.... ...|.+.|++++
T Consensus 126 kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 126 KSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred hHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 999999999987543 45555555554 6555 55555555 4333444455544444 899999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHh-CCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 046719 293 AKSVCKEMEAHGFDPDGFTYSMLFDGYSK-CGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEI 371 (808)
Q Consensus 293 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (808)
|+.++.++.+.+.. +..-...|..+|.. .++ +++..+++. ..+.+...+..++..|.+.|+.++|.+++.++.
T Consensus 201 Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 201 ADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 99999999998643 45557777778887 467 888887654 233577888899999999999999999999876
Q ss_pred HCCCC-CCHhhHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 046719 372 ENGLV-PDEVMFNTIVSGYCRTGDLN-RAMLAIQQMENHGLAPNC-ITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPN 448 (808)
Q Consensus 372 ~~~~~-~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 448 (808)
..... |+..+|.-+ +.+.+... .|..-|.+ . ..++. .....++..+.+.+.++-++++.. +.|.
T Consensus 275 ~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 341 (987)
T PRK09782 275 PLFTTDAQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPA 341 (987)
T ss_pred ccccCCCccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCc
Confidence 54333 455455444 33444332 12222222 0 11111 122334778888999997776532 2333
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCcchhHHHHHH
Q 046719 449 VKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENR-G-VLPNAQIYNMLI 526 (808)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~-~~~~~~~~~~li 526 (808)
......-..+....+...++...+..|... .+-+....-.+.-...+.|+.++|..+|+..... + ...+......++
T Consensus 342 ~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 342 NEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred chHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 332211111222346777777777777764 2336666666666778999999999999998763 1 222444555777
Q ss_pred HHHHhcCC---HHHHHHH----------------------HHHHHHc-C-CCC--CHHHHHHHHHHHHhcCChHHHHHHH
Q 046719 527 DGSCTMGR---IKDAFKF----------------------FDEMVKR-E-MGP--TLVTFNALINGLCKKGRVMEAEDML 577 (808)
Q Consensus 527 ~~~~~~g~---~~~A~~~----------------------~~~~~~~-~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~ 577 (808)
..|.+.+. ..++..+ ++..... + .++ +...|..+..++.. ++.++|+..+
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 77777665 3333333 1111111 1 234 67778888877776 8999999988
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCC
Q 046719 578 PQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVP 656 (808)
Q Consensus 578 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~ 656 (808)
.+.... .|+......+...+...|++++|...|+++... +|+...+..+...+...| .++|.+.+++.++.+ +.
T Consensus 500 ~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~ 574 (987)
T PRK09782 500 LQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LG 574 (987)
T ss_pred HHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Cc
Confidence 888875 466555445555667899999999999998753 455556667777788889 999999999999864 33
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILV 735 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 735 (808)
+...+..+...+.+.|++++|+..+++.++ +.|+...|..++.++.+.|++++|+..++++++ ..| +...+..++
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG 650 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALG 650 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 334444444455567999999999999998 578877999999999999999999999999998 556 567788999
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 736 KGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 736 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.++...|++++|+..++++++..|. ++..+..++.++...|++++|...++++++..|+...
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 9999999999999999999999887 8999999999999999999999999999999987655
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.4e-21 Score=204.74 Aligned_cols=683 Identities=13% Similarity=0.069 Sum_probs=481.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCC-C-CCCH-----HHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHc
Q 046719 102 TNILLSILSSAKLPSEALQLYASTKADG-T-RLSL-----DSINVLLECLVRC-----------NQYDRALDLFDEIVCM 163 (808)
Q Consensus 102 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~-----~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~ 163 (808)
+..+...|...|+.++...++..-.... . ..+. ..++.+...++.. ..+..|..+|+.+-..
T Consensus 44 wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ki 123 (1018)
T KOG2002|consen 44 WIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADKI 123 (1018)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHHh
Confidence 4456777999999999999887665211 0 0111 1233333333222 2344556666655443
Q ss_pred CCCcCHhhHHHHHHHHHhcCC--hHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhC--CCCCCH
Q 046719 164 GFRPDKFTYGKAVQAAVKIGD--LKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQR--KLVPTR 239 (808)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~ 239 (808)
....+...+-. -..|...|+ .+.|...|..+.+..+ +|+-.+---.......|++..|+.+|...... .+.||+
T Consensus 124 ~m~~~~~l~~~-~~~~l~~~~~~~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~ 201 (1018)
T KOG2002|consen 124 DMYEDSHLLVQ-RGFLLLEGDKSMDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV 201 (1018)
T ss_pred hccCcchhhhh-hhhhhhcCCccHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc
Confidence 33222221111 112334444 5899999999988743 46554444444555789999999999996653 344565
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH---HHccCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 046719 240 VTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGG---FCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLF 316 (808)
Q Consensus 240 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 316 (808)
.. .+..++.+.|+.+.|...|++..+..+ .++.++-.|... +.....+..+.+++...-... .-++...+.|.
T Consensus 202 rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LA 277 (1018)
T KOG2002|consen 202 RI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLA 277 (1018)
T ss_pred cc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHH
Confidence 33 334667799999999999999988543 233333333222 223345667777777765543 23778889999
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCC--cChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 046719 317 DGYSKCGDGEGVMALYEELSGRGFR--INSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGD 394 (808)
Q Consensus 317 ~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 394 (808)
+.|...|++..+..+.+.+...... .-...|..+.++|-..|++++|...|.+..+.....-+..+-.+...|.+.|+
T Consensus 278 n~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d 357 (1018)
T KOG2002|consen 278 NHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD 357 (1018)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch
Confidence 9999999999999999988776421 12345777899999999999999999998886444224455678999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 046719 395 LNRAMLAIQQMENHGLAPNCITFNTLIDKFCELG----EMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQ 470 (808)
Q Consensus 395 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 470 (808)
++.+...|+...+.. +-+..+...|...|...+ ..++|..++.+..+.- +.|...|-.+...+-...-+.. +.
T Consensus 358 le~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~ 434 (1018)
T KOG2002|consen 358 LEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LD 434 (1018)
T ss_pred HHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HH
Confidence 999999999999874 336677777777777665 5678888888877764 3478888888877776554444 66
Q ss_pred HHHHH----HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCcch------hHHHHHHHHHHhcCCHHH
Q 046719 471 ILEEM----ENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENR---GVLPNA------QIYNMLIDGSCTMGRIKD 537 (808)
Q Consensus 471 ~~~~m----~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~---~~~~~~------~~~~~li~~~~~~g~~~~ 537 (808)
.|... ...+-.+.+...|.+.......|.+.+|...|...... ...+|. .+--.+...+-..++.+.
T Consensus 435 ~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~ 514 (1018)
T KOG2002|consen 435 AYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEV 514 (1018)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhH
Confidence 66554 34555678889999999999999999999999988765 122222 233445666667789999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 046719 538 AFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKK 617 (808)
Q Consensus 538 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 617 (808)
|.+.|..+++.. +--+..|..++......+...+|...+....... ..++..+..+...+.+...+..|.+-|..+.+
T Consensus 515 A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 515 AEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred HHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHh
Confidence 999999999862 3245566666645555678899999999988753 34566777777788888888888887777765
Q ss_pred CC-CCcCHHhHHHHHHHHHH------------cC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 046719 618 LG-IKPSLRTYHPLLSGCIR------------EG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSE 683 (808)
Q Consensus 618 ~~-~~p~~~~~~~l~~~~~~------------~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 683 (808)
.- ..+|..+...|.+.|.. .+ .+.|.++|.+.++.+ +.+...-|.+.-+++..|++.+|+.+|.+
T Consensus 593 ~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 593 KTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred hhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHH
Confidence 42 23567777667665532 23 678889999988864 56778888888899999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC
Q 046719 684 MVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVK-GLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPS 762 (808)
Q Consensus 684 ~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 762 (808)
..+.. .-+..+|..++.+|..+|++..|++.|+...++ +...+..+...|+.++.+.|++.+|.+++..+....|. +
T Consensus 672 VrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~-~ 749 (1018)
T KOG2002|consen 672 VREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS-N 749 (1018)
T ss_pred HHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc-c
Confidence 99863 334557889999999999999999999997654 33346788889999999999999999999999988776 4
Q ss_pred HHHHHHHHHHH-------------------HhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 763 FCIYNELTNGL-------------------KQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 763 ~~~~~~l~~~l-------------------~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+.....++..+ ...+..++|.++|..+...+..-++
T Consensus 750 ~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~r~~ 804 (1018)
T KOG2002|consen 750 TSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDKRIS 804 (1018)
T ss_pred chHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 44443333322 2234667888888888887766333
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.6e-22 Score=206.58 Aligned_cols=666 Identities=13% Similarity=0.087 Sum_probs=469.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcCHh-hHHHHHHHHHhcC------
Q 046719 117 EALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCM------GFRPDKF-TYGKAVQAAVKIG------ 183 (808)
Q Consensus 117 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~-~~~~l~~~~~~~g------ 183 (808)
++-+++.-+...+. -.++|..+...|.+.|..++.+.+++..... ++..+.. .++.+...++..+
T Consensus 26 D~~ev~~IL~~e~a--~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~ 103 (1018)
T KOG2002|consen 26 DATEVLSILKAEQA--PLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKK 103 (1018)
T ss_pred ChHHHHHHHHHhcC--chhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555555443 3567999999999999999999999887621 1111111 2222222232221
Q ss_pred -----ChHHHHHHHHHhhhCCCCCCh-hhHHHHHHHHHccCC--HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 046719 184 -----DLKRACEIFDGMEKSRTRPNV-FVYNVLISGFCKEKK--IRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEF 255 (808)
Q Consensus 184 -----~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 255 (808)
.+..|..+|...-+-....+. .++... .|...|+ ++.|.+.|....+..+ +|+..+-.-.......|++
T Consensus 104 ~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~--~~l~~~~~~~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY 180 (1018)
T KOG2002|consen 104 DEKDELFDKATLLFDLADKIDMYEDSHLLVQRG--FLLLEGDKSMDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDY 180 (1018)
T ss_pred chhHHHHHHHHHHhhHHHHhhccCcchhhhhhh--hhhhcCCccHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccH
Confidence 233455566555443222111 111111 1223343 5899999999987632 3444433333444567899
Q ss_pred hHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhC---CChHHHHHH
Q 046719 256 EKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDP-DGFTYSMLFDGYSKC---GDGEGVMAL 331 (808)
Q Consensus 256 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~---g~~~~a~~~ 331 (808)
-.|..+|.......+..-....-.+...|.+.|+.+.|+..|.+..+. .| ++.++..|.-.-... ..+..+.++
T Consensus 181 ~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~l 258 (1018)
T KOG2002|consen 181 RGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQL 258 (1018)
T ss_pred HHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 999999999776533222222333446677999999999999999986 34 233333333322223 345566666
Q ss_pred HHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 046719 332 YEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVP--DEVMFNTIVSGYCRTGDLNRAMLAIQQMENHG 409 (808)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 409 (808)
+...-..+ ..|+++.+.|.+.|.-.|++..+..+...+....... -...|-.+.++|-..|++++|...|.+.....
T Consensus 259 l~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 259 LQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred HHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 66665543 3477889999999999999999999999888753211 13357789999999999999999998887754
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCHh
Q 046719 410 LAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMG----HFDKCFQILEEMENSGMKPNVV 485 (808)
Q Consensus 410 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~m~~~~~~~~~~ 485 (808)
..--...+..|...+...|+++.+...|+...+... -+..+...|...|...+ ..+.|..++.+.... .+.|..
T Consensus 338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~ 415 (1018)
T KOG2002|consen 338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSE 415 (1018)
T ss_pred CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHH
Confidence 332244566788999999999999999999988732 25677777777777765 567788888777665 356778
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH----
Q 046719 486 SYGSLINWLCKDCKLLEAEIVLKDM----ENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR---EMGPTL---- 554 (808)
Q Consensus 486 ~~~~ll~~~~~~~~~~~A~~~~~~m----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~---- 554 (808)
.|..+...+.....+.. +..+... ...+-.+.+...|.+.......|+++.|...|+..... ...++.
T Consensus 416 a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 416 AWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 88888777776655554 6666544 34455577889999999999999999999999988765 112222
Q ss_pred --HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 046719 555 --VTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDV-ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLL 631 (808)
Q Consensus 555 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 631 (808)
.+--.+...+-..++.+.|.++|..+++. .|.. ..|.-+...-...+...+|...++..... ...++..+..+.
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G 571 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLG 571 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHH
Confidence 22334555666778999999999999986 3543 34544443334467888999999998864 344555555555
Q ss_pred HHHHHcC-HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHc------------cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 046719 632 SGCIREG-IVAVEKLFNEMLQI-NLVPDLLVYNALIHCYAE------------HGDVQKALVLHSEMVDQGIRPDKMTYN 697 (808)
Q Consensus 632 ~~~~~~~-~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~g~~pd~~~~~ 697 (808)
..+.+.. +.-|.+-|+...+. ...+|..+..+|.+.|.+ .+..+.|+++|.+.+.. -+-|...-|
T Consensus 572 ~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dpkN~yAAN 650 (1018)
T KOG2002|consen 572 NLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN-DPKNMYAAN 650 (1018)
T ss_pred HHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-Ccchhhhcc
Confidence 5666666 77777777766653 223677777777776542 34678899999999885 234777889
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhc
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFE-NGFIPSFCIYNELTNGLKQE 776 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~ 776 (808)
.++-++...|++.+|..+|.+..+.. ..+..+|..++.+|..+|+|..|++.|+...+ .....++.+...|++++++.
T Consensus 651 GIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 651 GIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA 729 (1018)
T ss_pred chhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998753 34677899999999999999999999999887 56676899999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCc
Q 046719 777 GKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 777 g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
|++.+|..++..+....|.+..
T Consensus 730 ~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 730 GKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred hhHHHHHHHHHHHHHhCCccch
Confidence 9999999999999999998776
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=1.1e-24 Score=215.56 Aligned_cols=451 Identities=14% Similarity=0.104 Sum_probs=219.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 046719 312 YSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCR 391 (808)
Q Consensus 312 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 391 (808)
...|.+-..+.|++++|++....+-..+.. +....-.+-..+.+..+.+....--...++.... -..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHHH
Confidence 445555666666666666655554443221 1122222223344444444444433333333222 33455555566656
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHHH
Q 046719 392 TGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTN-NTLIDGYGRMGHFDKCFQ 470 (808)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~ 470 (808)
.|++++|+.+++.+.+.... ....|..+..++...|+.+.|.+.|.+.++. .|+.... +.+....-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 66666666666666554322 4455555555566666666666655555543 3332222 222223333555555555
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 046719 471 ILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREM 550 (808)
Q Consensus 471 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 550 (808)
.+.+..+.. +--.+.|+.|...+-.+|+...|+..|++....+.. -...|-.|...|...+.+++|+..|.+.....
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 555554431 122344555555555555555555555555543211 22345555555555555555555555554431
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC-HHhHH
Q 046719 551 GPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPD-VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS-LRTYH 628 (808)
Q Consensus 551 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 628 (808)
+....++..+...|...|.++-|+..+++.++. .|+ ...|+.|..++...|++.+|...|++.... .|+ ..+.+
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~ 358 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMN 358 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHH
Confidence 112444444444555555555555555555542 232 345555555555555555555555555542 222 34445
Q ss_pred HHHHHHHHcC-HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh
Q 046719 629 PLLSGCIREG-IVAVEKLFNEMLQINLVPD-LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLR 705 (808)
Q Consensus 629 ~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~ 705 (808)
.|...+...| +++|..+|.+..+. .|. ...++.|...|-..|++++|+..|++.+. +.|+.. .|+.++..|..
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHH
Confidence 5555555555 55555555555542 222 23445555555555555555555555554 444433 45555555555
Q ss_pred cCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 046719 706 EGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKE 781 (808)
Q Consensus 706 ~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 781 (808)
.|+.+.|++.+.+++. +.|. ...++.|+..|...|+..+|+..|+++++..|+ .+..+..++.++.--.+|.+
T Consensus 435 ~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD-fpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD-FPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC-CchhhhHHHHHHHHHhcccc
Confidence 5555555555555544 3443 334445555555555555555555555544333 34444444444433333333
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=3.9e-23 Score=204.81 Aligned_cols=434 Identities=16% Similarity=0.148 Sum_probs=361.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046719 347 CSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCE 426 (808)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 426 (808)
...|.+-..+.|++++|++--...-.++.. +....-.+-.++.+..+.++...--....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 344677777899999999876665554332 33333444556667777777666555555543 3367899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCCHHHHHH
Q 046719 427 LGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYG-SLINWLCKDCKLLEAEI 505 (808)
Q Consensus 427 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~A~~ 505 (808)
.|+++.|+.+++.+++...+ .+..|..+..++...|+.+.|.+.|.+..+. .|+..... .+...+-..|+..+|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999999987433 6788999999999999999999999998774 56544433 34445556899999999
Q ss_pred HHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 046719 506 VLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPT-LVTFNALINGLCKKGRVMEAEDMLPQITSSG 584 (808)
Q Consensus 506 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 584 (808)
-+-+..+... --...|+.|.-.+-..|+...|+..|++.++. .|+ ...|-.|...|...+.++.|...+.+....
T Consensus 206 cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l- 281 (966)
T KOG4626|consen 206 CYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL- 281 (966)
T ss_pred HHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 9888877532 24567999999999999999999999999875 444 778999999999999999999999998874
Q ss_pred CCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHH
Q 046719 585 LNPD-VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS-LRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVY 661 (808)
Q Consensus 585 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~ 661 (808)
.|+ ...+..+...|..+|..+-|+..|++.++ +.|+ ...|+.|..++-..| +.+|...|.+.+... +.-....
T Consensus 282 -rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 282 -RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred -CCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 454 57788888899999999999999999997 4677 788999999999999 999999999999863 3445678
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 046719 662 NALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYC 739 (808)
Q Consensus 662 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~ 739 (808)
+.|..+|.+.|.+++|..+|....+ +.|+.. .++.|+..|.++|++++|+..++++++ +.|+ ...++.++..|.
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 8899999999999999999999998 677765 899999999999999999999999998 8897 578999999999
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 740 NLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 740 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.+|+.++|+..|.+++..+|. =.+.++.|+..|...|+..+|+.-+++.++..|+...
T Consensus 434 e~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 999999999999999987655 5788999999999999999999999999999998665
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=3.8e-19 Score=198.12 Aligned_cols=253 Identities=16% Similarity=0.117 Sum_probs=131.4
Q ss_pred CCHHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHH
Q 046719 533 GRIKDAFKFFDEMVKRE-M-GPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPD-VITYNSLISGYSSLGSSQKCL 609 (808)
Q Consensus 533 g~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 609 (808)
+++++|++.|+..+..+ . +.....++.+...+...|++++|+..+++.++. .|+ ...|..+...+...|++++|+
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 45555555555555432 1 112334455555555555555555555555543 222 334555555555555555665
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 046719 610 ELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQG 688 (808)
Q Consensus 610 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 688 (808)
..|+++.+.. +.+...+..+...+...| +++|.+.|++.++.. +.+...+..++.++.+.|++++|+..|++.++.
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 5555555431 223444555555555555 555666665555532 223444555555666666666666666666552
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-H-------HHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 689 IRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA-D-------TYNILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 689 ~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
.| +...++.++.++...|++++|++.++++++ +.|+. . .+...+..+...|++++|..+++++++.++
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP 539 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 23 334555666666666666666666666555 22210 0 011111122234666666666666665544
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 046719 760 IPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 760 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
. +...+..+++++.+.|++++|+.+++++.+..+
T Consensus 540 ~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 540 E-CDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred C-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 3 444555666666666666666666666655443
No 18
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.90 E-value=4.9e-16 Score=156.02 Aligned_cols=607 Identities=12% Similarity=0.049 Sum_probs=297.5
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 046719 115 PSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDG 194 (808)
Q Consensus 115 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (808)
...|.-++..+.+.++ ..+..|.+-.+.--..|++..|..+..+-.+..+. +...|...+ +....+.|..+...
T Consensus 267 ikKaR~llKSvretnP-~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cpr-SeDvWLeai----RLhp~d~aK~vvA~ 340 (913)
T KOG0495|consen 267 IKKARLLLKSVRETNP-KHPPGWIASARLEEVAGKLSVARNLIMKGCEECPR-SEDVWLEAI----RLHPPDVAKTVVAN 340 (913)
T ss_pred HHHHHHHHHHHHhcCC-CCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCc-hHHHHHHHH----hcCChHHHHHHHHH
Confidence 4455555555555443 23344555555555566666666655554443332 444444433 33345556666666
Q ss_pred hhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 046719 195 MEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTR-VTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVS 273 (808)
Q Consensus 195 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 273 (808)
.++.- +.++..|---.+. ..+...=.+++++.++. .|+. ..| .+.+...+.+.|.-++.+..+. ++.+
T Consensus 341 Avr~~-P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~--iP~sv~LW----KaAVelE~~~darilL~rAvec-cp~s 409 (913)
T KOG0495|consen 341 AVRFL-PTSVRLWLKAADL---ESDTKNKKRVLRKALEH--IPRSVRLW----KAAVELEEPEDARILLERAVEC-CPQS 409 (913)
T ss_pred HHHhC-CCChhhhhhHHhh---hhHHHHHHHHHHHHHHh--CCchHHHH----HHHHhccChHHHHHHHHHHHHh-ccch
Confidence 55532 1123233222211 12233334555555554 2333 223 2333344555566666666553 2223
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHH----HhCCCCcChhcHHH
Q 046719 274 LVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEEL----SGRGFRINSYTCSI 349 (808)
Q Consensus 274 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~ 349 (808)
...|. +|.+..-|+.|..++....+. ++.+...|.+-...--..|+.+.+.++..+- ...|+..+...|..
T Consensus 410 ~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 410 MDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 33333 344455566666666666553 4445556655555555556555555554432 23444444444444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 350 LLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGE 429 (808)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 429 (808)
=...+-+.|.+-....+....+.-|+.-.. -..||+.-...|.+.+.
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEeed---------------------------------~~~tw~~da~~~~k~~~ 531 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEEED---------------------------------RKSTWLDDAQSCEKRPA 531 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhccccch---------------------------------hHhHHhhhHHHHHhcch
Confidence 444444444444444444444443332110 11244444444444444
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 046719 430 MDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKD 509 (808)
Q Consensus 430 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 509 (808)
++-|+.+|...++- ++.+...|...+..--..|..++-..+|++.... ++.....|......+-..|+...|..++..
T Consensus 532 ~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 532 IECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred HHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 44444444444432 1123334444443333444444444444444443 233333344444444444555555555555
Q ss_pred HHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-
Q 046719 510 MENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPD- 588 (808)
Q Consensus 510 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 588 (808)
..+.... +..+|-.-+.......+++.|..+|.+.... .|+..+|.--+....-.++.++|.+++++.++. .|+
T Consensus 610 af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f 684 (913)
T KOG0495|consen 610 AFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDF 684 (913)
T ss_pred HHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCch
Confidence 4444222 4444555555555555555555555544432 334444444444444445555555555555443 222
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 589 VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHC 667 (808)
Q Consensus 589 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 667 (808)
...|..+...+-+.++.+.|.+.|..-.+. ++-....|..|...-.+.| +-.|..++++..-++ +.+...|-..|.+
T Consensus 685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ 762 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRM 762 (913)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHH
Confidence 234555555555555555555555544432 2222223333333333344 555555555555443 4455666666666
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHH
Q 046719 668 YAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 668 ~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 747 (808)
-.+.|+.+.|..+..++++. ++.+...|..-|+...+.++-......+++ .+-|+.....++..+....++++|
T Consensus 763 ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~ka 836 (913)
T KOG0495|consen 763 ELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKA 836 (913)
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHH
Confidence 66777777777766666654 344445666666666666655555444444 344555666666666666677777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 748 YIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
.++|.++++.+++ .-.+|.-+...+.+.|.-++-..++++...-
T Consensus 837 r~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 837 REWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 7777777766555 5556666666666666555555555554443
No 19
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.89 E-value=1.1e-16 Score=167.41 Aligned_cols=648 Identities=15% Similarity=0.072 Sum_probs=377.4
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHH
Q 046719 109 LSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRA 188 (808)
Q Consensus 109 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 188 (808)
+...|++++|.+++.++++..+ .....|-.|..+|-..|+.+.+...+-.+.-..+. |...|..+.....+.|.+++|
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHH
Confidence 5566999999999999988764 46778999999999999999999887666555555 778999999999999999999
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCChhHHHHHHHH
Q 046719 189 CEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTY----NTLVDGYCKVGEFEKVSALRER 264 (808)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~ 264 (808)
.-+|.++++..+ ++....---+..|-+.|+...|...|.++.+..+..|..-. -.+++.+...++.+.|...++.
T Consensus 227 ~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999998754 35555556667788999999999999999887443233323 3345567777888889988888
Q ss_pred HHhC-CCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHH--------------------------HHHH
Q 046719 265 MKRD-KVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYS--------------------------MLFD 317 (808)
Q Consensus 265 ~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--------------------------~ll~ 317 (808)
.... +-..+...++.++..|.+...++.|......+......+|..-|. .+.-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 7763 223455678888888999999999998888877633333332221 1111
Q ss_pred HHHhCCChHHHHHHHHHHHhCC--CCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 046719 318 GYSKCGDGEGVMALYEELSGRG--FRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDL 395 (808)
Q Consensus 318 ~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 395 (808)
++......+....+.......+ +.-+...|..+..+|...|++.+|..+|..+.......+...|--+...|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 2222233333333333333333 22223334444444444444444444444444433333344444444444444444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 046719 396 NRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEM 475 (808)
Q Consensus 396 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 475 (808)
+.|++.|++.....+. +......|...+.+.|+.++|.+.+..+..- |... .
T Consensus 466 e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~----D~~~-----------------------~ 517 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINP----DGRN-----------------------A 517 (895)
T ss_pred HHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCC----Cccc-----------------------h
Confidence 4444444444443211 2233333444444444444444444443210 0000 0
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----------------------CCCcchhHHHHHHHHHHhcC
Q 046719 476 ENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENR----------------------GVLPNAQIYNMLIDGSCTMG 533 (808)
Q Consensus 476 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----------------------~~~~~~~~~~~li~~~~~~g 533 (808)
...+..|+........+.+.+.|+.++-+.+-..|... +..-.......++.+-.+.+
T Consensus 518 e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~ 597 (895)
T KOG2076|consen 518 EACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKAT 597 (895)
T ss_pred hhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccC
Confidence 01112223333333333444444444433322222211 01112223333444444443
Q ss_pred CHHHHHHHH------HHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHH----HHHHHHHHHH
Q 046719 534 RIKDAFKFF------DEMVKREMGPT--LVTFNALINGLCKKGRVMEAEDMLPQITSSGL-NPDVI----TYNSLISGYS 600 (808)
Q Consensus 534 ~~~~A~~~~------~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~----~~~~l~~~~~ 600 (808)
+.....+-. ......+...+ -..+..++..+++.+++++|..+...+..... .-+.. .-...+.+..
T Consensus 598 ~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~ 677 (895)
T KOG2076|consen 598 DDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASL 677 (895)
T ss_pred chHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHH
Confidence 322221111 11111222222 13456677789999999999999998876432 11222 2334555667
Q ss_pred cCCCHHHHHHHHHHHHHC-CC--CcC-HHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 046719 601 SLGSSQKCLELYENMKKL-GI--KPS-LRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQ 675 (808)
Q Consensus 601 ~~g~~~~A~~~~~~~~~~-~~--~p~-~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 675 (808)
..+++..|...++.|+.. +. .|. ...|+...+...+.+ -.--.+++..+.......+...+....+....++.+.
T Consensus 678 ~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~ 757 (895)
T KOG2076|consen 678 YARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFK 757 (895)
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchH
Confidence 899999999999999864 11 222 233443444444444 2222333333333222222344444455667789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHH----------hcCCHhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCC
Q 046719 676 KALVLHSEMVDQGIRPDKMTYNSLI-FGHL----------REGKLSEVKELVNDMKVKGL-IPKADTYNILVKGYCNLKD 743 (808)
Q Consensus 676 ~A~~~~~~~~~~g~~pd~~~~~~l~-~~~~----------~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~ 743 (808)
-|+..+-++.. ..||....+.++ .++. ++-.+-+++.++++..+... .-....+..++.+|-..|=
T Consensus 758 ~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl 835 (895)
T KOG2076|consen 758 HALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGL 835 (895)
T ss_pred HHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHccc
Confidence 99999988887 467755444322 2222 12224556667766655321 1246788899999999999
Q ss_pred hhHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 046719 744 FGGAYIWYREMFENGFIP-----------SFCIYNELTNGLKQEGKLKEAQILCSEI 789 (808)
Q Consensus 744 ~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 789 (808)
..-|..+|+++++..|.+ -..+-..|.-.|..+|+.+.|.+++++-
T Consensus 836 ~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 836 VHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred HHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 999999999999764321 1234567778899999999999988763
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=3.2e-19 Score=197.56 Aligned_cols=333 Identities=10% Similarity=0.015 Sum_probs=194.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 046719 417 FNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCK 496 (808)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 496 (808)
...++..+.+.|++++|..++......... +...+..++......|++++|...++++.... +.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 344455566667777777777766665333 33444444455556777777777777766542 3345566666666667
Q ss_pred cCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 046719 497 DCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDM 576 (808)
Q Consensus 497 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 576 (808)
.|++++|...++++.... +.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 777777777777766642 22455566666667777777777776666655422 223333222 235566777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHH----HHHHHHHHHH
Q 046719 577 LPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVA----VEKLFNEMLQ 651 (808)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~----a~~~~~~~~~ 651 (808)
++.+.+....++...+..+...+...|++++|+..++++.+.. +.+...+..+...+...| +++ |...|+++++
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 6666554322233344444556666677777777777666542 233445555555666666 443 5666666665
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHH
Q 046719 652 INLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADT 730 (808)
Q Consensus 652 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 730 (808)
.. +.+...+..++..+...|++++|+..++++.+. .|+ ...+..++.++.+.|++++|+..++++.+ ..|+...
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~~ 353 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTSK 353 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccchH
Confidence 43 334556666666666666666666666666663 343 33555666666666666666666666665 2343322
Q ss_pred -HHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 731 -YNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 731 -~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+..++.++...|++++|...|+++++..|+
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 333455566666666666666666665443
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=6.4e-18 Score=188.34 Aligned_cols=255 Identities=13% Similarity=0.051 Sum_probs=171.7
Q ss_pred cCCHHHHHHHHHHHHhCC-CCc-chhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 046719 497 DCKLLEAEIVLKDMENRG-VLP-NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAE 574 (808)
Q Consensus 497 ~~~~~~A~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 574 (808)
.+.+++|...|+...+.+ ..| ....+..+...+...|++++|+..|++.++.. +.+...|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 355667777777766543 122 33456666666777777777777777777642 223556667777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCC
Q 046719 575 DMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQIN 653 (808)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~ 653 (808)
..|+++++.. +.+...|..+...+...|++++|+..|++..+.. +.+...+..+...+.+.| +++|...|++.++..
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 7777776642 2245667777777777777777777777777642 233555556666667777 777777777777642
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-H-------HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 046719 654 LVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK-M-------TYNSLIFGHLREGKLSEVKELVNDMKVKGLI 725 (808)
Q Consensus 654 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 725 (808)
+.+...++.+..++...|++++|++.|++.++. .|+. . .++..+..+...|++++|.++++++++ +.
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~ 538 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--ID 538 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cC
Confidence 445677788888888888888888888888873 3321 1 111122233346888888888888877 44
Q ss_pred CC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 726 PK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 726 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
|+ ...+..++.++.+.|++++|+.+|+++.+...
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 54 45677888888888999999888888887643
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=8.4e-20 Score=193.46 Aligned_cols=262 Identities=15% Similarity=0.093 Sum_probs=146.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC---hhhHHHHHHHHHc
Q 046719 140 LLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPN---VFVYNVLISGFCK 216 (808)
Q Consensus 140 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 216 (808)
....+...|++++|...|.++.+.++. +..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777776443 556677777777777777777777777766432211 2456667777777
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHccCChhH
Q 046719 217 EKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSL----VMFNSLLGGFCKAKRMEE 292 (808)
Q Consensus 217 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~ 292 (808)
.|++++|..+|+++.+.. +++..++..++..+.+.|++++|...++.+.+.+..+.. ..+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 777777777777776642 235666777777777777777777777777665433221 133445555666666666
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046719 293 AKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIE 372 (808)
Q Consensus 293 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (808)
|...|+++.+.. +.+...+..+...+.+.|++++|.+.++++...+......+++.++.+|++.|++++|...++++.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666665542 1123344445555555555555555555554432221122333344444444444444444444433
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046719 373 NGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQME 406 (808)
Q Consensus 373 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 406 (808)
.. |+...+..++..+.+.|++++|..+++++.
T Consensus 278 ~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l 309 (389)
T PRK11788 278 EY--PGADLLLALAQLLEEQEGPEAAQALLREQL 309 (389)
T ss_pred hC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 31 222223334444444444444444444443
No 23
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.88 E-value=5.1e-16 Score=162.48 Aligned_cols=637 Identities=13% Similarity=0.057 Sum_probs=409.5
Q ss_pred CCCccHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHH
Q 046719 96 YYKPTFTNILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKA 175 (808)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 175 (808)
|..+..+.+|..+|-..|+.+.+...+-..-... +.|..-|..+.....+.|++++|+-.|.++++..+. +....-.-
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~er 247 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYER 247 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHH
Confidence 4466677889999999999999998875554443 557788999999999999999999999999997665 44444455
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCChhhH----HHHHHHHHccCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 046719 176 VQAAVKIGDLKRACEIFDGMEKSRTRPNVFVY----NVLISGFCKEKKIRDAEKLFDEMCQRK-LVPTRVTYNTLVDGYC 250 (808)
Q Consensus 176 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~ 250 (808)
...|-+.|+...|..-|.++....++.|..-. -.+++.+...++-+.|.+.++.....+ -.-+...++.++..|.
T Consensus 248 s~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l 327 (895)
T KOG2076|consen 248 SSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFL 327 (895)
T ss_pred HHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 66788999999999999999986542222222 234566777788899999998887632 2235567889999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCcCHHHH----------------------H----HHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 251 KVGEFEKVSALRERMKRDKVEVSLVMF----------------------N----SLLGGFCKAKRMEEAKSVCKEMEAHG 304 (808)
Q Consensus 251 ~~g~~~~a~~~~~~~~~~~~~~~~~~~----------------------~----~li~~~~~~g~~~~A~~~~~~m~~~g 304 (808)
+...++.+......+......+|..-| . -+.-++......+....+.....+..
T Consensus 328 ~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n 407 (895)
T KOG2076|consen 328 KNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN 407 (895)
T ss_pred HhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc
Confidence 999999999988888762222222211 1 12233445555555555555556655
Q ss_pred --CCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhH
Q 046719 305 --FDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMF 382 (808)
Q Consensus 305 --~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 382 (808)
+.-++..|.-+..+|...|.+.+|..+|..+.....--+.+.|--+..+|...|..+.|.+.++.++...+. +...-
T Consensus 408 ~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~R 486 (895)
T KOG2076|consen 408 VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDAR 486 (895)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhh
Confidence 333566788999999999999999999999998876667889999999999999999999999999987544 55566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 046719 383 NTIVSGYCRTGDLNRAMLAIQQMEN--------HGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNT 454 (808)
Q Consensus 383 ~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 454 (808)
-+|...+.+.|+.++|.+.++.+.. .+..|+..........+.+.|+.++=..+...|+.. .....
T Consensus 487 i~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~------~~~~~ 560 (895)
T KOG2076|consen 487 ITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDD------FLKKR 560 (895)
T ss_pred hhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------HHHHH
Confidence 7788889999999999999998652 223344444445556666777777655555555432 11111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH------HHHHHHhCCCCcc-h-hHHHHHH
Q 046719 455 LIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEI------VLKDMENRGVLPN-A-QIYNMLI 526 (808)
Q Consensus 455 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~------~~~~m~~~~~~~~-~-~~~~~li 526 (808)
++- - +..++... .....+.+-.......++.+-.+.++...... .+..-..+|...+ . ..+.-++
T Consensus 561 ~~f--~---~~~k~r~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i 633 (895)
T KOG2076|consen 561 YIF--P---RNKKKRRR--AIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELI 633 (895)
T ss_pred Hhc--c---hHHHHHHH--hhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHH
Confidence 110 0 00000000 00000111122222233333333332211111 1111112222222 2 2456677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 046719 527 DGSCTMGRIKDAFKFFDEMVKRE-MGPTLV----TFNALINGLCKKGRVMEAEDMLPQITSS-GLNPD---VITYNSLIS 597 (808)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~ 597 (808)
..+++.+++++|+.+...+.... +.-+.. .-...+.+.+..+++..|...++.|... +...+ ...||...+
T Consensus 634 ~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s 713 (895)
T KOG2076|consen 634 LSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFS 713 (895)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 78899999999999988887652 111222 1233455667888999999999988763 22222 346776666
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH--HHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHH----
Q 046719 598 GYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSG--CIREG-IVAVEKLFNEMLQINLVPDLLVYNAL-IHCYA---- 669 (808)
Q Consensus 598 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~---- 669 (808)
.+.+.++-.--.+++...... +|+......++.+ ....+ +..|...+-..... .||....+.+ +-++.
T Consensus 714 ~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~lglafih~a~ 789 (895)
T KOG2076|consen 714 YFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINLCLGLAFIHLAL 789 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--CccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHHHH
Confidence 666666655444444444332 3333222222222 34445 88888877777764 3553333322 22221
Q ss_pred ------ccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC---------C----HH
Q 046719 670 ------EHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP---------K----AD 729 (808)
Q Consensus 670 ------~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---------~----~~ 729 (808)
++-.+-.++.++.+..+....- -..++..++.+|-..|-..-|..++++.++ +.| + ..
T Consensus 790 qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~--~~p~~~~~~~~d~~dLrke 867 (895)
T KOG2076|consen 790 QRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE--VSPKDVTDPKEDNYDLRKE 867 (895)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC--CCccccccccCCcccHHHH
Confidence 2223556777777777643221 234777899999999999999999999987 322 1 22
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHH
Q 046719 730 TYNILVKGYCNLKDFGGAYIWYREM 754 (808)
Q Consensus 730 ~~~~l~~~~~~~g~~~~A~~~~~~~ 754 (808)
.-..|.-.|...|+...|.+++++-
T Consensus 868 AA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 868 AAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred HHhhhhhhhccCCcHHHHHHHHHhh
Confidence 3345566789999999999988763
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=2.3e-19 Score=190.10 Aligned_cols=298 Identities=13% Similarity=0.063 Sum_probs=154.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc---hhHHHHHHHHHHhcCCHH
Q 046719 460 GRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPN---AQIYNMLIDGSCTMGRIK 536 (808)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~ 536 (808)
...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..+...|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34445555555555554431 22333444444455555555555555555444321111 123455555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHH
Q 046719 537 DAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDV----ITYNSLISGYSSLGSSQKCLELY 612 (808)
Q Consensus 537 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~ 612 (808)
+|..+|+++.+. .+.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..|..++..+...|++++|...|
T Consensus 125 ~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 555555555543 1234455555555555556666666555555543322111 12334445555556666666666
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 046719 613 ENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP 691 (808)
Q Consensus 613 ~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 691 (808)
+++.+.. +.+...+..+...+.+.| +++|.+.++++.+.+.......++.++.+|.+.|++++|.+.++++.+. .|
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 6655431 122334444444455555 5555555555554321112344555666666666666666666666652 45
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCChhHHHHHHHHHHHCCCCCCHH
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCN---LKDFGGAYIWYREMFENGFIPSFC 764 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 764 (808)
+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..++. .|+.++|+.+++++++.++.|++.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 555556666666666666666666666665 34665565555555443 346666666666666654444443
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=5.5e-18 Score=192.07 Aligned_cols=419 Identities=11% Similarity=0.004 Sum_probs=228.9
Q ss_pred hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 344 SYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDK 423 (808)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 423 (808)
.......+....-.|+.++|++++.+..... ..+...+..+...+.+.|++++|..++++..+... .+...+..+...
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~ 92 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3333444445555566666666665555421 11333455555566666666666666666555422 134445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 046719 424 FCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEA 503 (808)
Q Consensus 424 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A 503 (808)
+...|++++|+..++++.+... .+.. +..+...+...|+.++|+..++++.... +.+...+..+...+...+..++|
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHH
Confidence 5566666666666666555421 1333 5555555555666666666666655531 22344444445555555555555
Q ss_pred HHHHHHHHhCCCCcch------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---HHHH
Q 046719 504 EIVLKDMENRGVLPNA------QIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRV---MEAE 574 (808)
Q Consensus 504 ~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~ 574 (808)
+..++.... .|+. .....++......+ ....+++ ++|+
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~------------------------------~~~~~r~~~ad~Al 216 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT------------------------------RSEKERYAIADRAL 216 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc------------------------------cChhHHHHHHHHHH
Confidence 555544332 1110 00011111110000 0111122 4455
Q ss_pred HHHHHHHhC-CCCCCHH-HH----HHHHHHHHcCCCHHHHHHHHHHHHHCCCC-cCHHhHHHHHHHHHHcC-HHHHHHHH
Q 046719 575 DMLPQITSS-GLNPDVI-TY----NSLISGYSSLGSSQKCLELYENMKKLGIK-PSLRTYHPLLSGCIREG-IVAVEKLF 646 (808)
Q Consensus 575 ~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~-~~~a~~~~ 646 (808)
+.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+++.+.+.+ |+. ....+...+...| +++|...|
T Consensus 217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 217 AQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHH
Confidence 555555532 1112111 00 11122233445666666666666554311 221 1111234455555 66666666
Q ss_pred HHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHhcCCH
Q 046719 647 NEMLQINLVP---DLLVYNALIHCYAEHGDVQKALVLHSEMVDQG-----------IRPDK---MTYNSLIFGHLREGKL 709 (808)
Q Consensus 647 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-----------~~pd~---~~~~~l~~~~~~~g~~ 709 (808)
+++++..... .......+..++.+.|++++|.++++++.+.. -.|+. ..+..++..+...|++
T Consensus 296 ~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 296 TELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 6655432111 12344555666777788888888888777631 01221 2445677788888888
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 046719 710 SEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSE 788 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~ 788 (808)
++|++.++++... .| +...+..++..+...|++++|++.++++++..|. +...+..++..+...|++++|..++++
T Consensus 376 ~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 376 PQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8888888888773 44 5677788888888888888888888888887665 677788888888888888888888888
Q ss_pred HHHcCCCCCchhhhHh
Q 046719 789 ISIVGKDAWTNEDQSA 804 (808)
Q Consensus 789 ~~~~~~~~~~~~~~~~ 804 (808)
+++..|++.....+.+
T Consensus 453 ll~~~Pd~~~~~~~~~ 468 (765)
T PRK10049 453 VVAREPQDPGVQRLAR 468 (765)
T ss_pred HHHhCCCCHHHHHHHH
Confidence 8888888877444443
No 26
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=1.2e-14 Score=146.12 Aligned_cols=579 Identities=11% Similarity=0.020 Sum_probs=343.1
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHH
Q 046719 110 SSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRAC 189 (808)
Q Consensus 110 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 189 (808)
-..|++..|..+...=.+. ++.+...|..-+ +....+.|..+...+++..+. ++..|......- .+...=.
T Consensus 296 EvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~vvA~Avr~~P~-Sv~lW~kA~dLE---~~~~~K~ 366 (913)
T KOG0495|consen 296 EVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTVVANAVRFLPT-SVRLWLKAADLE---SDTKNKK 366 (913)
T ss_pred HHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHHHHHHHHhCCC-ChhhhhhHHhhh---hHHHHHH
Confidence 4566777777665444333 355666675544 344677788888888876554 666665544432 2344456
Q ss_pred HHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046719 190 EIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDK 269 (808)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 269 (808)
+++++.++. ++.++..|...+ ...+.++|+-++.+.++. ++.... |..+|.+..-++.|..++....+.
T Consensus 367 RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~- 435 (913)
T KOG0495|consen 367 RVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREI- 435 (913)
T ss_pred HHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 778887775 344666776655 345667799999998875 222333 445567777889999999988875
Q ss_pred CCcCHHHHHHHHHHHHccCChhHHHHHHHHH----HHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcC--
Q 046719 270 VEVSLVMFNSLLGGFCKAKRMEEAKSVCKEM----EAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRIN-- 343 (808)
Q Consensus 270 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 343 (808)
++.+...|.+....--..|+.+....+.++- ...|+..+...|..=...|-..|..-.+..+...++..|+...
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 6678888888777777889999988888765 3467888888888878888888888888888888877776532
Q ss_pred hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 344 SYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDK 423 (808)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 423 (808)
-.+|..-...|.+.+.++-|+.+|...++.-+. +...|...+..--..|..+.-..+|++.... ++-....|......
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 246666666677777777777777666654222 4455655555555566666666666666654 22244455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 046719 424 FCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEA 503 (808)
Q Consensus 424 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A 503 (808)
+...|++..|+.++..+.+.... +...|-.-+.......+++.|..+|.+.... .|+...|
T Consensus 594 ~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~---------------- 654 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVW---------------- 654 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhh----------------
Confidence 55566666666666665554322 4455555555555555666666665554432 3344444
Q ss_pred HHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046719 504 EIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSS 583 (808)
Q Consensus 504 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 583 (808)
.--+....-.++.++|++++++.++. ++.-...|..+...+-+.++++.|.+.|..-.+.
T Consensus 655 -------------------mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 655 -------------------MKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK 714 (913)
T ss_pred -------------------HHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 33334444444555555555555443 2222344444455555555555555544443332
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHH
Q 046719 584 GLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYN 662 (808)
Q Consensus 584 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 662 (808)
++..+..|..|...--+.|.+-.|..+++.....+ +.+...|...|..-.+.| .+.|..+..+.++. ++.+...|.
T Consensus 715 -cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWa 791 (913)
T KOG0495|consen 715 -CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWA 791 (913)
T ss_pred -CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHH
Confidence 22233445555554455555555555555554432 233444555555555555 55555555554443 344455566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcc
Q 046719 663 ALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNL 741 (808)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~ 741 (808)
.-|....+.++-......+++ ..-|......++..+....++++|.+.|.+.++ +.|| -.+|..+...+.+.
T Consensus 792 EaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~h 864 (913)
T KOG0495|consen 792 EAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRH 864 (913)
T ss_pred HHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHh
Confidence 666665555554433333332 233555555666666666667777777777766 3343 45566666666667
Q ss_pred CChhHHHHHHHHHHHCCC
Q 046719 742 KDFGGAYIWYREMFENGF 759 (808)
Q Consensus 742 g~~~~A~~~~~~~~~~~~ 759 (808)
|.-+.-.+++.+.....|
T Consensus 865 G~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 865 GTEEDQKEVLKKCETAEP 882 (913)
T ss_pred CCHHHHHHHHHHHhccCC
Confidence 766666666666665433
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=1.1e-17 Score=185.47 Aligned_cols=330 Identities=10% Similarity=0.022 Sum_probs=262.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCC
Q 046719 105 LLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGD 184 (808)
Q Consensus 105 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 184 (808)
++..+.+.|++++|+.++.......+ .+...+..++.++...|++++|...|++++...+. +...+..+...+.+.|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCC
Confidence 45667889999999999998887654 35666777778888899999999999999987665 67788888899999999
Q ss_pred hHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 046719 185 LKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRER 264 (808)
Q Consensus 185 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 264 (808)
+++|...|+++.+..+ .+...+..+...+...|++++|...++.+...... +...+..+ ..+.+.|++++|..+++.
T Consensus 126 ~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 9999999999988643 36778888999999999999999999988766433 23333333 347889999999999999
Q ss_pred HHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHH----HHHHHHHHHhCCC
Q 046719 265 MKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEG----VMALYEELSGRGF 340 (808)
Q Consensus 265 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~ 340 (808)
+......++...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++ |...|+++.....
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 8776544455556666778889999999999999998764 2356778888899999999885 7888998887643
Q ss_pred CcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046719 341 RINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTL 420 (808)
Q Consensus 341 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 420 (808)
.+..++..+...+.+.|++++|...+++.++..+. +...+..+...|.+.|++++|+..|+++...+.. +...+..+
T Consensus 282 -~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~ 358 (656)
T PRK15174 282 -DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYA 358 (656)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHH
Confidence 35677888888899999999999999998886544 4566777888899999999999999988876432 23334445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 046719 421 IDKFCELGEMDKAEEWVKRMLEK 443 (808)
Q Consensus 421 i~~~~~~g~~~~A~~~~~~~~~~ 443 (808)
...+...|+.++|...|++..+.
T Consensus 359 a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 66788899999999999988876
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=3.9e-16 Score=172.92 Aligned_cols=445 Identities=12% Similarity=0.035 Sum_probs=232.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 046719 315 LFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGD 394 (808)
Q Consensus 315 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 394 (808)
-+-...+.|+++.|+..|+++.+........++ .++..+...|+.++|+..+++...... .+......+...|...|+
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n-~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMN-ISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCC
Confidence 344456778888888888888776433222233 677777777888888888887773211 122223333557777788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 046719 395 LNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEE 474 (808)
Q Consensus 395 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 474 (808)
+++|+++|+++.+.... +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.+++
T Consensus 118 yd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 88888888888876544 4566667777778888888888888887765 44455554444444445666568888888
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHH------HHHHHHHH-h----cC---CHHHHHH
Q 046719 475 MENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIY------NMLIDGSC-T----MG---RIKDAFK 540 (808)
Q Consensus 475 m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~------~~li~~~~-~----~g---~~~~A~~ 540 (808)
+.+.. +.+...+..+...+.+.|-...|.++..+-.+. +.+....+ ..+++.-. . .+ -.+.|+.
T Consensus 195 ll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 195 AVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 87762 446667777777777777777777655543221 11111111 11111110 0 01 1233444
Q ss_pred HHHHHHHc-CCCCC-HH----HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 046719 541 FFDEMVKR-EMGPT-LV----TFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYEN 614 (808)
Q Consensus 541 ~~~~~~~~-~~~~~-~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 614 (808)
-++.+... +..|. .. +..-.+-++...|++.++++.++.+...+.+....+-..+.++|...+++++|..+|++
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 44444432 11121 11 11223335555666666666666666555433334555566666666666666666666
Q ss_pred HHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----
Q 046719 615 MKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGI----- 689 (808)
Q Consensus 615 ~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~----- 689 (808)
+.....++. ..+++......|..+|...+++++|..+++++.+..-
T Consensus 353 ~~~~~~~~~-----------------------------~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~ 403 (822)
T PRK14574 353 LYYSDGKTF-----------------------------RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGV 403 (822)
T ss_pred Hhhcccccc-----------------------------CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEec
Confidence 644310000 0011222233444444444555555555444444100
Q ss_pred ------CC--CHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 690 ------RP--DKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 690 ------~p--d~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
.| |-. .+..++..+.-.|++.+|.+.++++.. ..| |......++..+...|...+|..+++.+....|
T Consensus 404 ~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P 481 (822)
T PRK14574 404 YGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAP 481 (822)
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Confidence 01 111 122334444445555555555555544 223 444444555555555555555555544444433
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 760 IPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 760 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
. +.......+..+...|+|++|..+.+++....|++..
T Consensus 482 ~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 482 R-SLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred c-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 3 4444444455555555555555555555554444443
No 29
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=6e-17 Score=183.70 Aligned_cols=419 Identities=10% Similarity=0.040 Sum_probs=283.3
Q ss_pred CCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 046719 307 PDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIV 386 (808)
Q Consensus 307 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 386 (808)
.+.....-.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|.+++++.++..+. +...+..++
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 355566677888899999999999999998632 334556888999999999999999999999887443 566778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 046719 387 SGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFD 466 (808)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 466 (808)
..+...|++++|+..+++..+.... +.. +..+...+...|+.++|+..++++.+.... +...+..+...+...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChH
Confidence 9999999999999999999987433 556 888899999999999999999999987443 5666677888888999999
Q ss_pred HHHHHHHHHHHCCCCCCH------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCcchh-HH----HHHH
Q 046719 467 KCFQILEEMENSGMKPNV------VSYGSLINWLC-----KDCKL---LEAEIVLKDMENR-GVLPNAQ-IY----NMLI 526 (808)
Q Consensus 467 ~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~-----~~~~~---~~A~~~~~~m~~~-~~~~~~~-~~----~~li 526 (808)
.|+..++.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+ ...+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 99999887653 2221 01111222111 11223 4566666666543 1112111 11 1112
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcC
Q 046719 527 DGSCTMGRIKDAFKFFDEMVKREMG-PTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNP---DVITYNSLISGYSSL 602 (808)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 602 (808)
..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+++.+..... ....+..+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 2334556666666666666655321 221 11223555666666666666666665432110 122344444455666
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHH
Q 046719 603 GSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPD---LLVYNALIHCYAEHGDVQKALV 679 (808)
Q Consensus 603 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~ 679 (808)
|++++|...++++.+.. ++....+.. ....|+ ...+..++..+...|++++|++
T Consensus 324 g~~~eA~~~l~~~~~~~-P~~~~~~~~----------------------~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 324 ENYPGALTVTAHTINNS-PPFLRLYGS----------------------PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred ccHHHHHHHHHHHhhcC-CceEeecCC----------------------CCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666665431 111110000 001233 2345567778889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 680 LHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 680 ~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
.++++.+. .+.+...+..++..+...|++++|++.++++++ +.|+ ...+..++..+...|++++|...++++++..
T Consensus 381 ~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 381 RARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999884 233555888999999999999999999999988 5675 6667788888999999999999999999875
Q ss_pred CC
Q 046719 759 FI 760 (808)
Q Consensus 759 ~~ 760 (808)
|+
T Consensus 458 Pd 459 (765)
T PRK10049 458 PQ 459 (765)
T ss_pred CC
Confidence 44
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=1.6e-15 Score=167.96 Aligned_cols=450 Identities=11% Similarity=0.039 Sum_probs=321.5
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHH
Q 046719 276 MFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDG--FTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNA 353 (808)
Q Consensus 276 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 353 (808)
.|...|. ..+.|+++.|+..|++..+. .|+. ..+ .++..+...|+.++|+..+++..... .........+...
T Consensus 37 ~y~~aii-~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~l 111 (822)
T PRK14574 37 QYDSLII-RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARA 111 (822)
T ss_pred HHHHHHH-HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHH
Confidence 4444444 45899999999999999886 4443 244 88889999999999999999998221 1122333333567
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 046719 354 LCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKA 433 (808)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 433 (808)
+...|++++|+++++++++..+. +...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHH
Confidence 88889999999999999998766 5677778899999999999999999999876 44555555555555556777679
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhH--HHHHHHHHhc---------CC---
Q 046719 434 EEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSY--GSLINWLCKD---------CK--- 499 (808)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~---------~~--- 499 (808)
++.++++.+.... +...+..++....+.|-...|.++..+-... +.+....+ ...+.-..+. .+
T Consensus 189 L~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 189 LQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 9999999988533 6778888899999999999999887764322 12222111 0111111211 12
Q ss_pred HHHHHHHHHHHHhC-CCCcch-hH----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 046719 500 LLEAEIVLKDMENR-GVLPNA-QI----YNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEA 573 (808)
Q Consensus 500 ~~~A~~~~~~m~~~-~~~~~~-~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 573 (808)
.+.|+.-++.+... +..|.. .. ..-.+-++...|+..++++.|+.+...+.+....+-..+.++|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 23345555555542 122322 22 2234557788999999999999999887665567888999999999999999
Q ss_pred HHHHHHHHhCC-----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHHcCHHHHHHHHH
Q 046719 574 EDMLPQITSSG-----LNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS-LRTYHPLLSGCIREGIVAVEKLFN 647 (808)
Q Consensus 574 ~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~a~~~~~ 647 (808)
..+++.+.... ..++......|.-+|...+++++|..+++++.+. .|- ...+..
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~~~------------------ 406 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVYGL------------------ 406 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEeccCC------------------
Confidence 99999997643 1223444678888999999999999999999873 331 000100
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 046719 648 EMLQINLVPDL-LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP 726 (808)
Q Consensus 648 ~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 726 (808)
......||- .....++..+.-.|++.+|.+.++++... -+-|......++..+...|...+|.+.++.+.. +.|
T Consensus 407 --~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P 481 (822)
T PRK14574 407 --PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAP 481 (822)
T ss_pred --CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCC
Confidence 001122332 23344566677889999999999999874 234666888899999999999999999977766 466
Q ss_pred C-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 727 K-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 727 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+ ..+....+.++...|++++|..+.+++.+..|+
T Consensus 482 ~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 482 RSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 4 566678888888899999999999998887655
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=2e-16 Score=151.71 Aligned_cols=495 Identities=16% Similarity=0.117 Sum_probs=325.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhH-HHHHHHHHhcCChHHHHHHHHHhhhCCCCCC----hhhHHH
Q 046719 135 DSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTY-GKAVQAAVKIGDLKRACEIFDGMEKSRTRPN----VFVYNV 209 (808)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ 209 (808)
.++..|...|.....+.+|+..|+-+++...-|+.-.. ..+...+.+.+.+..|+++|+-.+..-+.-+ ....+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 34556777788888999999999988876666665432 2355678889999999999988776422111 123455
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHH--------HHHH
Q 046719 210 LISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMF--------NSLL 281 (808)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------~~li 281 (808)
+...+.+.|.+++|+..|+...+. .||..+--.|+-++...|+.++..+.|.+|+.....+|..-| ..|+
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 555677899999999999998876 689888778888888899999999999999876444433322 1122
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHhCCCh----HHHHHHHHHHHhCCCCcChhcHHHHHHH
Q 046719 282 GGFCKAKRMEEAKSVCKEMEAHGFDPDGF----TYSMLFDGYSKCGDG----EGVMALYEELSGRGFRINSYTCSILLNA 353 (808)
Q Consensus 282 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 353 (808)
.--.+. ..++.|.+.+- .+.. |-..+|.-. -.-++ +-.++.++.-.-..+..+. -..-..-
T Consensus 360 ~eai~n-------d~lk~~ek~~k-a~aek~i~ta~kiiapv-i~~~fa~g~dwcle~lk~s~~~~la~dl--ei~ka~~ 428 (840)
T KOG2003|consen 360 NEAIKN-------DHLKNMEKENK-ADAEKAIITAAKIIAPV-IAPDFAAGCDWCLESLKASQHAELAIDL--EINKAGE 428 (840)
T ss_pred HHHHhh-------HHHHHHHHhhh-hhHHHHHHHHHHHhccc-cccchhcccHHHHHHHHHhhhhhhhhhh--hhhHHHH
Confidence 211111 12222222110 0110 000000000 00011 1111111111110000000 0112345
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH-HHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 046719 354 LCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVS-GYCR-TGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMD 431 (808)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 431 (808)
+.++|+++.|++++.-..+.+-+.-...-+.|-. -|.+ -.++.+|...-+......- -+......-.+....+|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHH
Confidence 7789999999999888776533222222222211 2222 2367777776666554321 13333333334445679999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046719 432 KAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDME 511 (808)
Q Consensus 432 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 511 (808)
+|.+.+++.+..........|| +.-.+-..|++++|++.|-++... +..+..+...+.+.|-...+..+|++++.+..
T Consensus 508 ka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 9999999998764332222333 333567789999999999887543 34577788888888888999999999988876
Q ss_pred hCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 046719 512 NRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVIT 591 (808)
Q Consensus 512 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 591 (808)
.. ++.|+.+.+.|.+.|-+.|+-..|.+.+-.--+. ++.+..+...|...|....-+++++.+|++..- +.|+..-
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~k 661 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSK 661 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHH
Confidence 65 5668889999999999999999998887665543 677888999999999999999999999998865 5799999
Q ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHH
Q 046719 592 YNSLISGY-SSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEML 650 (808)
Q Consensus 592 ~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~ 650 (808)
|..|+..| .+.|++++|+++|+...++ ++.|..++..|+..+...|+.++.+.-+++.
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d~key~~kle 720 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKDAKEYADKLE 720 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchhHHHHHHHHH
Confidence 98887755 5789999999999998874 6778888888888888888666666655544
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.6e-15 Score=145.67 Aligned_cols=480 Identities=12% Similarity=0.088 Sum_probs=313.1
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhCCChHHHHHHHHHHHhCCCCcChhc----HHH
Q 046719 275 VMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYS-MLFDGYSKCGDGEGVMALYEELSGRGFRINSYT----CSI 349 (808)
Q Consensus 275 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~ 349 (808)
.+...|.+-|.......+|+..|+-+++....|+..... .+.+.+.+..++.+|+++|+..++.-+..+..+ .+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 344455666766777788888888888877777654432 355677888888999998888877643333332 333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------CCHHHH
Q 046719 350 LLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLA------------PNCITF 417 (808)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~ 417 (808)
+.-.+.+.|+++.|+..|+...+. .|+..+-..|+-.+...|+-++..+.|.+|...-.. |+....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 334567889999999999988775 456555545555666789999999999999764322 233333
Q ss_pred HHHHHH-HH---hcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 046719 418 NTLIDK-FC---ELGEMDKAEEWVKRMLE---KGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSL 490 (808)
Q Consensus 418 ~~li~~-~~---~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 490 (808)
+..|.. .. ...+-..|++.+-...+ --+.|+.. . -.+-+++.++.-....+..+.. -.-
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~-g~dwcle~lk~s~~~~la~dle--i~k 425 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------A-GCDWCLESLKASQHAELAIDLE--INK 425 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------c-ccHHHHHHHHHhhhhhhhhhhh--hhH
Confidence 222211 00 00111112222211111 11111110 0 0122233332221111111111 111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 046719 491 INWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSC--TMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKG 568 (808)
Q Consensus 491 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 568 (808)
..-|.++|+++.|+++++-+.+.+-......-+.|-..+. ...++..|..+-+..+..+ ..+......-.+.-..+|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 2357889999999999998877644333333333332222 2446777887777776542 223433333334455689
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHH
Q 046719 569 RVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFN 647 (808)
Q Consensus 569 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~ 647 (808)
++++|.+.+.+.+.....-....||. .-.+...|+.++|++.|-++..- +..+..++..+.+.|.... ...|.+++.
T Consensus 505 d~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 99999999999986432212223332 23456789999999999888652 3456677777777887777 888999988
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 046719 648 EMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK 727 (808)
Q Consensus 648 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 727 (808)
+.... ++.|+.++..|.+.|-+.|+-..|.+.+-.-... ++-+..+...|+.-|....-+++|+.+|+++.- +.|+
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~ 658 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN 658 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence 87764 5678899999999999999999999987666553 556778888899999999889999999999866 8999
Q ss_pred HHHHHHHH-HHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 728 ADTYNILV-KGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGK 778 (808)
Q Consensus 728 ~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 778 (808)
..-|..++ +++.+.|++.+|+.+|+.....-|. |..++..|++.....|-
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHHHHHHHhccccc
Confidence 99998665 4556799999999999999887666 99999999998887774
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.7e-14 Score=137.98 Aligned_cols=447 Identities=16% Similarity=0.228 Sum_probs=281.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcC--ChHH-HHHHHHHhhhCCCCCChhhHHHH
Q 046719 134 LDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIG--DLKR-ACEIFDGMEKSRTRPNVFVYNVL 210 (808)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~-A~~~~~~~~~~~~~~~~~~~~~l 210 (808)
.++-|.|+.. ..+|.+.++.-+|++|...|...+...--.+++.-+-.+ ++-- -.+-|-.|...|.. +..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 3455566553 456778888888888888887777776666665433322 2221 23445555555433 33343
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCh
Q 046719 211 ISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRM 290 (808)
Q Consensus 211 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 290 (808)
+.|++.+ -+|+..++ +..+|.+||.++|+--..+.|.+++++-.....+.+..+||.+|.+-. +
T Consensus 191 -----K~G~vAd--L~~E~~PK-----T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~ 254 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLPK-----TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----Y 254 (625)
T ss_pred -----ccccHHH--HHHhhcCC-----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----h
Confidence 5566554 34444332 667888999999999888999999998888878888888988887643 2
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHH----HHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHH-HHH
Q 046719 291 EEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEG----VMALYEELSGRGFRINSYTCSILLNALCKEGKVEI-AEE 365 (808)
Q Consensus 291 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~ 365 (808)
....++..+|....+.||..|+|+++++.++.|.++. |.+++.+|.+.|+.|...+|..++..+++.++..+ +..
T Consensus 255 ~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 255 SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 2337888889888889999999999999998887765 45677788888888888888888888888776533 344
Q ss_pred HHHHHHH----CCCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCH---HHHHHHHHHHHhcCCH
Q 046719 366 IVGKEIE----NGLVP----DEVMFNTIVSGYCRTGDLNRAMLAIQQMENHG----LAPNC---ITFNTLIDKFCELGEM 430 (808)
Q Consensus 366 ~~~~~~~----~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~---~~~~~li~~~~~~g~~ 430 (808)
++.++.. +.++| |..-|...+..|.+..+.+-|..+..-..... +.|+. .-|..+....|+....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 4443332 22222 34456677777778888888877766655321 23332 2356677777888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046719 431 DKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDM 510 (808)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m 510 (808)
+....+|+.|+-.-.-|+..+...++.+..-.|.++-.-+++..+...|..-+......++..+++
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~-------------- 480 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR-------------- 480 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc--------------
Confidence 888888888887777778888888888888888888888888888776644444333333333332
Q ss_pred HhCCCCcchh---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-C
Q 046719 511 ENRGVLPNAQ---IYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGL-N 586 (808)
Q Consensus 511 ~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 586 (808)
....|+.. -+.....-+ ...-.+.....-.++.+..+ .....+..+-.+.+.|+.++|.++|..+..++- -
T Consensus 481 --~k~hp~tp~r~Ql~~~~ak~-aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~i 555 (625)
T KOG4422|consen 481 --DKLHPLTPEREQLQVAFAKC-AADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKI 555 (625)
T ss_pred --CCCCCCChHHHHHHHHHHHH-HHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcC
Confidence 22222211 111111111 00111111112223333333 334455566667777778888777777754332 2
Q ss_pred CCHHHHH---HHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 046719 587 PDVITYN---SLISGYSSLGSSQKCLELYENMKKLGI 620 (808)
Q Consensus 587 ~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~ 620 (808)
|-....| .+++.-...+++..|+..++-|...+.
T Consensus 556 p~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 556 PRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 2233333 444555667777777777777765543
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=1.9e-13 Score=132.52 Aligned_cols=452 Identities=13% Similarity=0.087 Sum_probs=307.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHH
Q 046719 132 LSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLI 211 (808)
Q Consensus 132 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 211 (808)
.+...|.--..--..++++..|+++|++++..... +...|..-+..-.+...+..|..++++.+..-+. -...|.-.+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHH
Confidence 45566766667777788899999999999987654 7788888888888999999999999999875333 334566666
Q ss_pred HHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChh
Q 046719 212 SGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRME 291 (808)
Q Consensus 212 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 291 (808)
.+--..|++..|.++|++-.+. .|+...|.+.|..-.+....+.|..++++..- +.|++.+|--....=.+.|+..
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHH
Confidence 6667789999999999998875 79999999999999999999999999999876 5689999998888888999999
Q ss_pred HHHHHHHHHHHC-CC-CCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcC-hhcHHHHHHHHHhcCChHHHHHH--
Q 046719 292 EAKSVCKEMEAH-GF-DPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRIN-SYTCSILLNALCKEGKVEIAEEI-- 366 (808)
Q Consensus 292 ~A~~~~~~m~~~-g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~-- 366 (808)
.|..+|....+. |- ..+...+.+....=.++..++.|.-+|+-.++.-+... ...|......--+.|+.....+.
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999999988764 11 11223445555555567788888888888776532211 23344444444445554443332
Q ss_pred ------HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHH----H----HHHhcCCH
Q 046719 367 ------VGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCI--TFNTLI----D----KFCELGEM 430 (808)
Q Consensus 367 ------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li----~----~~~~~g~~ 430 (808)
++..+..++. |-.+|-..++.-...|+.+...++|++.... ++|-.. .|.-.| + .-....++
T Consensus 305 ~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 2334444333 6667777777777778888888888887764 444221 111111 1 11235677
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 046719 431 DKAEEWVKRMLEKGVSPNVKTNNTLIDGY----GRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIV 506 (808)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 506 (808)
+.++++++..++. ++...+|+.-+--+| .++.++..|.+++.... |..|...++...|..-.+.+.++....+
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 7777777777763 333445544443333 35667777777776655 4466677777777777777777777777
Q ss_pred HHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 046719 507 LKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKRE-MGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGL 585 (808)
Q Consensus 507 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 585 (808)
+++.++-++. +..+|......-...|+.+.|..+|+-.++.. .......|...|+.-...|.++.|..+++.+++.
T Consensus 460 YEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r-- 536 (677)
T KOG1915|consen 460 YEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR-- 536 (677)
T ss_pred HHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--
Confidence 7777776544 66677777666667777777777777776642 1122445566666666677777777777777764
Q ss_pred CCCHHHHHHHHH
Q 046719 586 NPDVITYNSLIS 597 (808)
Q Consensus 586 ~~~~~~~~~l~~ 597 (808)
.+.+..|.++..
T Consensus 537 t~h~kvWisFA~ 548 (677)
T KOG1915|consen 537 TQHVKVWISFAK 548 (677)
T ss_pred cccchHHHhHHH
Confidence 334445555544
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=6.5e-14 Score=134.01 Aligned_cols=324 Identities=21% Similarity=0.246 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH--ccCChh-HHHHHHHHHHHCCCCCCHhhHHHH
Q 046719 239 RVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFC--KAKRME-EAKSVCKEMEAHGFDPDGFTYSML 315 (808)
Q Consensus 239 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~-~A~~~~~~m~~~g~~~~~~~~~~l 315 (808)
+++=|.|+.. ...|.+.++.-+|+.|.+.|++.+...-..|...-+ ...+.- .-.+-|-.|...|-. ...+|.
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sWK-- 191 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSWK-- 191 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-cccccc--
Confidence 3345555554 567888888888888888888777766555554322 222222 122334444444322 233332
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 046719 316 FDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDL 395 (808)
Q Consensus 316 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 395 (808)
.|++.+ ++-+.. +....++..+|.++|+-...+.|.+++.+......+.+..+||.+|.+-.-
T Consensus 192 ------~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~---- 254 (625)
T KOG4422|consen 192 ------SGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY---- 254 (625)
T ss_pred ------cccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----
Confidence 233322 222222 224556666666666666666666666666555555566666666654321
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH-HHH
Q 046719 396 NRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKA----EEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDK-CFQ 470 (808)
Q Consensus 396 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~ 470 (808)
....+++.+|......||..|+|+++.+..+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ +..
T Consensus 255 ~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 255 SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 22255666666666666666666666666666655443 3455556666666666666666666666555432 333
Q ss_pred HHHHHHHC----CCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCcc---hhHHHHHHHHHHhcCCH
Q 046719 471 ILEEMENS----GMKP----NVVSYGSLINWLCKDCKLLEAEIVLKDMENRG----VLPN---AQIYNMLIDGSCTMGRI 535 (808)
Q Consensus 471 ~~~~m~~~----~~~~----~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~g~~ 535 (808)
++.++.+. .++| |...+..-+..|.+..+.+-|.++..-+.... +.|+ ..-|..+..+.|+....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 44443321 1111 23334444445555555555555444443221 1122 11244455555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046719 536 KDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSS 583 (808)
Q Consensus 536 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 583 (808)
+.-..+|+.|+-.-+.|+..+...++.+..-.|.++-..+++.+++..
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 555556655555545555555555555555555555555555555543
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=3.3e-12 Score=124.07 Aligned_cols=438 Identities=15% Similarity=0.139 Sum_probs=334.3
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHH
Q 046719 111 SAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACE 190 (808)
Q Consensus 111 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 190 (808)
.++.+..|.++|.+.+... ..+...|.--+.+-.++.....|+.++++++..-+..|.. |---+-.--..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHH
Confidence 5667889999999998766 4577789999999999999999999999998865554544 4344444456799999999
Q ss_pred HHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-C
Q 046719 191 IFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRD-K 269 (808)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~ 269 (808)
+|++-.. ..|+...|++.|+.-.+-..++.|..++++.+-. .|++.+|---...--++|....+..+|+..... |
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 9999876 5799999999999999999999999999998754 699999999999999999999999999988764 1
Q ss_pred C-CcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhCCChHHHHH--------HHHHHHhC
Q 046719 270 V-EVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPD--GFTYSMLFDGYSKCGDGEGVMA--------LYEELSGR 338 (808)
Q Consensus 270 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~--------~~~~~~~~ 338 (808)
- .-+...+.+....=.++..++.|.-+|+-.++. ++.+ ...|..+...=-+-||...... -|+.+++.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 1 112334455555555678899999999998876 2222 2344444444445566544433 24555555
Q ss_pred CCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-hhHHHHHHH--------HHhcCCHHHHHHHHHHHHHCC
Q 046719 339 GFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDE-VMFNTIVSG--------YCRTGDLNRAMLAIQQMENHG 409 (808)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~ 409 (808)
+ +.|-.+|-..++.-...|+.+...+++++.+..-++... ..|.-.|-. -....+++.+.++|+..++.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l- 395 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL- 395 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-
Confidence 3 446778888888888899999999999999876332221 223222221 12467899999999999884
Q ss_pred CCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh
Q 046719 410 LAPNCITFNTLIDKF----CELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVV 485 (808)
Q Consensus 410 ~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 485 (808)
++....||.-+--.| .++.++..|++++...+ |..|...++...|..-.+.+++|.+..++++..+.+ +.|..
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~ 472 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCY 472 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhH
Confidence 555666665554444 46789999999999887 558889999999999999999999999999999874 56788
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 046719 486 SYGSLINWLCKDCKLLEAEIVLKDMENRG-VLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALIN 562 (808)
Q Consensus 486 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 562 (808)
+|......-...|+.+.|..+|.-..+.. .......|.+.|+.-...|.++.|..+|+++++.. +...+|.++..
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~ 548 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAK 548 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHH
Confidence 88888888888999999999999998763 22344578888888889999999999999999863 23446665554
No 37
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.71 E-value=6.8e-11 Score=119.56 Aligned_cols=559 Identities=12% Similarity=0.115 Sum_probs=324.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 046719 136 SINVLLECLVRCNQYDRALDLFDEIVCMG-FRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGF 214 (808)
Q Consensus 136 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (808)
.|..-+..+.++|+...-+..|++++..= +......|...++-....|-++-+..+|++.++.. |. .-+-.|..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~--P~--~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA--PE--AREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC--HH--HHHHHHHHH
Confidence 47777888889999999999999887642 22344578888888888888999999999988753 33 356777888
Q ss_pred HccCCHhHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCcCH--HHHHHHHHH
Q 046719 215 CKEKKIRDAEKLFDEMCQR------KLVPTRVTYNTLVDGYCKVGEFE---KVSALRERMKRDKVEVSL--VMFNSLLGG 283 (808)
Q Consensus 215 ~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~--~~~~~li~~ 283 (808)
++.+++++|.+.+...+.. ..+.+...|.-+.+..+++-+.- .+..+++.+.. .-+|. ..|++|.+-
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHH
Confidence 8999999999888877542 12335556777766666554432 23344444433 22343 468889999
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHH-hCCCCcChhcHHHHHHHHHhcCChHH
Q 046719 284 FCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELS-GRGFRINSYTCSILLNALCKEGKVEI 362 (808)
Q Consensus 284 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~ 362 (808)
|.+.|.++.|..+|++.+.. ...+.-++.+.+.|++-.+..-+..+ +... ..+-+.+.. +++-
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n~ed~~-------------dl~~ 321 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGNEEDDV-------------DLEL 321 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccChhhhh-------------hHHH
Confidence 99999999999999888765 23444556666666543221111110 0000 011111111 1122
Q ss_pred HHHHHHHHHHCC-----------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHH
Q 046719 363 AEEIVGKEIENG-----------LVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPN------CITFNTLIDKFC 425 (808)
Q Consensus 363 a~~~~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~ 425 (808)
...-|+.+.... -..++..|..-+.. ..|+..+-...|.+.... +.|. ...|..+...|-
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHH
Confidence 222233322221 12255566555544 457777777788777653 3322 245778888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 046719 426 ELGEMDKAEEWVKRMLEKGVSPN---VKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLE 502 (808)
Q Consensus 426 ~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 502 (808)
..|+++.|+.+|++..+-..+-- ..+|.....+-.+..+++.|+++++..... |.... ..+...+...+
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-----~~~yd~~~pvQ 470 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE-----LEYYDNSEPVQ 470 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh-----hhhhcCCCcHH
Confidence 89999999999988876533211 345555566666777888888887776532 22111 11222222221
Q ss_pred HHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046719 503 AEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITS 582 (808)
Q Consensus 503 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 582 (808)
+. +..+...|..+++.--..|-++....+|++++...+. ++.+.......+..+.-++++.+.+++-+.
T Consensus 471 ~r----------lhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 471 AR----------LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred HH----------HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 11 0114455666666666667777777777777765443 333333333334445556677766666554
Q ss_pred CCCCCCH-HHHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH--HHcC-HHHHHHHHHHHHHCCCC
Q 046719 583 SGLNPDV-ITYNSLISGYSS---LGSSQKCLELYENMKKLGIKPSLRTYHPLLSGC--IREG-IVAVEKLFNEMLQINLV 655 (808)
Q Consensus 583 ~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~~-~~~a~~~~~~~~~~~~~ 655 (808)
.-..|++ ..|+..+.-+.+ ..+.+.|..+|++..+ |++|...-+..|+.+- .+.| ...|..++++.... +.
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~ 617 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VK 617 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CC
Confidence 3223443 355555544432 3356777777777777 5666544433333332 2345 66777777775543 23
Q ss_pred CC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC--CH
Q 046719 656 PD--LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM---TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP--KA 728 (808)
Q Consensus 656 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~ 728 (808)
+. ..+||..|.--...=-+..-..+|+++++. -||.. +....+..-++.|.++.|..++....+. ..| +.
T Consensus 618 ~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~ 694 (835)
T KOG2047|consen 618 EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTT 694 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCCh
Confidence 32 245666554433333344455677777763 44443 2334455566777777777777766543 344 45
Q ss_pred HHHHHHHHHHHccCC
Q 046719 729 DTYNILVKGYCNLKD 743 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~ 743 (808)
..|...-.--.+.|+
T Consensus 695 ~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 695 EFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHHHHHhcCC
Confidence 556666666667777
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.70 E-value=2.2e-12 Score=134.80 Aligned_cols=659 Identities=15% Similarity=0.097 Sum_probs=327.6
Q ss_pred cHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHH
Q 046719 100 TFTNILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAA 179 (808)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (808)
..+..|+.-|+..|..+.|- +|..|.-...+.....++.++.+....++.+.+. .|...+|..+..+|
T Consensus 26 vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 26 VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLLKAY 93 (1088)
T ss_pred hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHHHHH
Confidence 33456777788888888777 7877776666666667778887777777766554 46677888888888
Q ss_pred HhcCChHHHHHHHHH-hhh-------CCC-----------------CCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCC
Q 046719 180 VKIGDLKRACEIFDG-MEK-------SRT-----------------RPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRK 234 (808)
Q Consensus 180 ~~~g~~~~A~~~~~~-~~~-------~~~-----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 234 (808)
...||+.. ++..++ +.. .|. -||.. ..+....-.|-++.+++++..++...
T Consensus 94 r~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 94 RIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 88887654 222222 111 111 11111 12222233344555555554443321
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 046719 235 LVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSM 314 (808)
Q Consensus 235 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 314 (808)
.. .+... .++-+.. +..-...+....+..--.++..+|..++..-...|+++.|..++.+|.+.|++.+.+-|-.
T Consensus 170 ~~-~p~~v--fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 170 WN-APFQV--FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred cc-chHHH--HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 11 01000 1222211 1222333333333221247777788888777778888888888888888887777766666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 046719 315 LFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGD 394 (808)
Q Consensus 315 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 394 (808)
|+-+ .++...+..+++.|...|+.|+..|+..-+..+.++|+...+.+...... ......+..+.++.....+
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~h----g~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAH----GFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhh----hhhHHHHHHHhcccHhHHH
Confidence 6555 67777777777777778888888777777666666555332222111000 0011112222222111111
Q ss_pred HHH-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHhcC---
Q 046719 395 LNR-----AMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEK--GV-SPNVKTNNTLIDGYGRMG--- 463 (808)
Q Consensus 395 ~~~-----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g--- 463 (808)
++. ....+.+..-.|+......|...+.. ..+|+-++.+++...+..- .. ..++..|..++.-|.+.-
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~ 396 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERH 396 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhh
Confidence 111 11111111112222222333322222 2244444444444443321 01 112233333333222211
Q ss_pred -------------------ChHHHHHHHHHHHH----------------CCCCC-------CHhhHHHHHHHHHhcCCHH
Q 046719 464 -------------------HFDKCFQILEEMEN----------------SGMKP-------NVVSYGSLINWLCKDCKLL 501 (808)
Q Consensus 464 -------------------~~~~a~~~~~~m~~----------------~~~~~-------~~~~~~~ll~~~~~~~~~~ 501 (808)
...+..++...... +.+.| -...-+.++..++...+..
T Consensus 397 ~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~l 476 (1088)
T KOG4318|consen 397 ICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKL 476 (1088)
T ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111100 00000 0112234445555555555
Q ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 046719 502 EAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR--EMGPTLVTFNALINGLCKKGRVMEAEDMLPQ 579 (808)
Q Consensus 502 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 579 (808)
+++..-+..... . -...|..||+-++...+.+.|..+.++.... .+.-+..-+..+.+.+.+.+...++..++.+
T Consensus 477 K~l~~~ekye~~-l--f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 477 KILCDEEKYEDL-L--FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHHHHHHH-H--hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence 555443333322 1 1256889999999999999999999888654 2334566678888999999999999999999
Q ss_pred HHhCCCC-CC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHH-------------hHHHHHHHHHHcC-HHHHH
Q 046719 580 ITSSGLN-PD-VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLR-------------TYHPLLSGCIREG-IVAVE 643 (808)
Q Consensus 580 ~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------------~~~~l~~~~~~~~-~~~a~ 643 (808)
+.+.-.. |. ..+.--+.+.....|+.+...++++-+...|+..+-. ....-...|.+.. +..+.
T Consensus 554 ~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~ 633 (1088)
T KOG4318|consen 554 DKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDL 633 (1088)
T ss_pred hhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHH
Confidence 8873222 21 2333445555667888888888887776665433100 0001111122222 33333
Q ss_pred HHHHHHHHCCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHHH---HCC---------CCC---------CHHHHHHH
Q 046719 644 KLFNEMLQINLVPDLL---VYNALIHCYAEHGDVQKALVLHSEMV---DQG---------IRP---------DKMTYNSL 699 (808)
Q Consensus 644 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~---~~g---------~~p---------d~~~~~~l 699 (808)
+.+-+++.++-..++. -+..=+..|.++|++.+|.++.+.-- ..+ +.| +......|
T Consensus 634 e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRL 713 (1088)
T KOG4318|consen 634 EGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRL 713 (1088)
T ss_pred HHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHH
Confidence 3333333322111111 11111223566666666665543210 000 000 00112236
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHH
Q 046719 700 IFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLK---DFGGAYIWYREMFENGF-IP-SFCIYNELTNGLK 774 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~-~~-~~~~~~~l~~~l~ 774 (808)
+..|.+.|+++.|..+|.++. +.|++.+...|+..+.+.. +..++....+++.+... .| +...+..-+-...
T Consensus 714 L~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~ 790 (1088)
T KOG4318|consen 714 LQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFAT 790 (1088)
T ss_pred HHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHh
Confidence 667777888888888888776 5677777777777766544 34445444444444221 11 2222222223333
Q ss_pred hcCChhHHHHHHHHHHHcC
Q 046719 775 QEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 775 ~~g~~~~A~~~~~~~~~~~ 793 (808)
+....+.|.+.+.+.-.+.
T Consensus 791 q~~qkkaAkk~f~r~eeq~ 809 (1088)
T KOG4318|consen 791 QTEQKKAAKKCFERLEEQL 809 (1088)
T ss_pred hHHHHHHHHHHHHHHHHcc
Confidence 3334446666666665553
No 39
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.69 E-value=6.5e-10 Score=112.63 Aligned_cols=525 Identities=11% Similarity=0.091 Sum_probs=298.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC-CCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 046719 242 YNTLVDGYCKVGEFEKVSALRERMKRD-KVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYS 320 (808)
Q Consensus 242 ~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 320 (808)
|-..+..+.++|+.......|++.... .+.-....|...+......|-.+.+.+++++.++. ++....-.+..++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHH
Confidence 444444444555555555555444332 11122234444444444445555555555555443 2222344444455
Q ss_pred hCCChHHHHHHHHHHHhCC------CCcChhcHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 046719 321 KCGDGEGVMALYEELSGRG------FRINSYTCSILLNALCKEGKVE---IAEEIVGKEIENGLVPDEVMFNTIVSGYCR 391 (808)
Q Consensus 321 ~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 391 (808)
+.+++++|.+.+..++... .+.+-..|..+-+...++.+.- ....+++.++.+-..--...|++|.+.|.+
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 5555555555554443321 1112223333333333322111 122233333322111113456666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHcC-----
Q 046719 392 TGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELG----------------------EMDKAEEWVKRMLEKG----- 444 (808)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~A~~~~~~~~~~~----- 444 (808)
.|.+++|.++|++....- .++.-|+.+.+.|.... +++-....|+.+....
T Consensus 261 ~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred hhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 666666666666655431 12222333333332211 1222333333333221
Q ss_pred ------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046719 445 ------VSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPN------VVSYGSLINWLCKDCKLLEAEIVLKDMEN 512 (808)
Q Consensus 445 ------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~------~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 512 (808)
-+.++..|..-+.. ..|+..+-...+.+.... +.|. ...|..+.+.|-..|+.+.|..+|++..+
T Consensus 339 sVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 11234444443332 346677777778777654 3332 34577888889999999999999999877
Q ss_pred CCCCcc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------------CCCHHHHHHHHHHHHhcCChHH
Q 046719 513 RGVLPN---AQIYNMLIDGSCTMGRIKDAFKFFDEMVKREM-----------------GPTLVTFNALINGLCKKGRVME 572 (808)
Q Consensus 513 ~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~g~~~~ 572 (808)
-..+.- ..+|......-.+..+++.|+++.+......- ..+..+|...++..-..|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 543321 34677777777788889999998887754211 1134456666777777888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCH-HhHHHHHHHHH-HcC---HHHHHHHHH
Q 046719 573 AEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSL-RTYHPLLSGCI-REG---IVAVEKLFN 647 (808)
Q Consensus 573 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~-~~~---~~~a~~~~~ 647 (808)
-..+++.+++..+. .+..-......+-.+..++++.+.|++-+..--.|+. ..|+..+.-+. +-| ++.|..+|+
T Consensus 496 tk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 88899998875432 2222222233345677788999999887765444553 34555444432 223 999999999
Q ss_pred HHHHCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 046719 648 EMLQINLVPDLL--VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM--TYNSLIFGHLREGKLSEVKELVNDMKVKG 723 (808)
Q Consensus 648 ~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 723 (808)
++++ +++|... .|-.....--+.|-...|+.+++++... +++... +||..|.--...=-.....++++++++
T Consensus 575 qaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe-- 650 (835)
T KOG2047|consen 575 QALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE-- 650 (835)
T ss_pred HHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--
Confidence 9998 5666542 2333333334568899999999998764 565443 788777655444445666788888888
Q ss_pred CCCCHHH---HHHHHHHHHccCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChh
Q 046719 724 LIPKADT---YNILVKGYCNLKDFGGAYIWYREMFE-NGFIPSFCIYNELTNGLKQEGKLK 780 (808)
Q Consensus 724 ~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~g~~~ 780 (808)
.-|+... .......-++.|..+.|..+|...-+ .+|..+...|...-..=.+.|+-+
T Consensus 651 ~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 651 SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 5676543 33455666789999999999998877 566777888888877778888843
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6e-12 Score=122.30 Aligned_cols=289 Identities=17% Similarity=0.128 Sum_probs=160.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChH
Q 046719 494 LCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMG--PTLVTFNALINGLCKKGRVM 571 (808)
Q Consensus 494 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 571 (808)
+-...+.+++..-...+...|.+.+...-+....+.....++++|+.+|+++.+.+.- .|..+|+.++ |.++.+-
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s- 313 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS- 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH-
Confidence 3333455555555555555555544444444444555566666666666666665211 1344555444 2222211
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHHcC-HHHHHHHHHHH
Q 046719 572 EAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS-LRTYHPLLSGCIREG-IVAVEKLFNEM 649 (808)
Q Consensus 572 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~-~~~a~~~~~~~ 649 (808)
.+.++.+-+..--+-.+.|...+.+.|+-.++.++|..+|+...+. .|. ...|+.+..-|.... ...|.+-++.+
T Consensus 314 -kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 -KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred -HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1111111111000112345555666666666666777777666653 344 333444444455555 66666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH
Q 046719 650 LQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA 728 (808)
Q Consensus 650 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 728 (808)
++.+ +.|-..|..|+++|.-.+...=|+-.|+++.+ +.| |...|.+|+.+|.+.++.++|++.|++....| ..+.
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~ 466 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEG 466 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccch
Confidence 6653 45666677777777766766677777777666 344 44566777777777777777777777766543 2244
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHC----CC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFEN----GF-IP-SFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
..+..|+..|.+.++.++|..+|++.++. |. .| ...+..-|+.-+.+.+++++|..++.+..+.
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 56666677777777777776666665541 22 21 2233344556666667777777666666554
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=5.4e-13 Score=130.21 Aligned_cols=222 Identities=14% Similarity=0.071 Sum_probs=173.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHH
Q 046719 564 LCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAV 642 (808)
Q Consensus 564 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a 642 (808)
+.-.|+.-.|...|+..++.... +...|.-+...|....+.++.+..|++..+.+ +.|+.+|..-.+...-.+ +++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 44578888888999988875422 22337778888999999999999999988753 446778887777777777 9999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046719 643 EKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVK 722 (808)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 722 (808)
..-|++.+..+ +.+...|.-+.-+..+.++++++...|++.+++ ++.-...|+..+.++..++++++|.+.|+.+++
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 99999998853 334567777777778889999999999999886 555556899999999999999999999999887
Q ss_pred CCCCC-------HHHHH--HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 723 GLIPK-------ADTYN--ILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 723 g~~p~-------~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
+.|+ ...+. .++- +.-.+++..|..++.++++.+|+ ....+..|+....++|+.++|+.+|++.....
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred -hccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4454 22222 2221 22348999999999999998887 78889999999999999999999999887654
No 42
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.67 E-value=1.1e-12 Score=136.89 Aligned_cols=126 Identities=13% Similarity=0.017 Sum_probs=72.6
Q ss_pred HhHHHHHHHHHHcC-HHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC-HHHHHHH
Q 046719 625 RTYHPLLSGCIREG-IVAVEKLFNEMLQI--NLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGI-RPD-KMTYNSL 699 (808)
Q Consensus 625 ~~~~~l~~~~~~~~-~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~pd-~~~~~~l 699 (808)
..|..|++-+.... .+.|..+.++.... ....|..-+..+.+.+.+.+...++.++++++.+.-. .|. ..+...+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 44666666666666 77777777665432 1233455666777777777777777777777765311 222 2245566
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 046719 700 IFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREM 754 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 754 (808)
.+.....|+.+.-.++++-+...|+.-+ .-+.....+.++...|.+..+..
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~ 622 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPE 622 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHH
Confidence 6666677777776666666665554321 12223334455555555554443
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.6e-12 Score=128.10 Aligned_cols=271 Identities=13% Similarity=0.100 Sum_probs=168.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046719 518 NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLIS 597 (808)
Q Consensus 518 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 597 (808)
+........+-+...+++.+..++++...+. .++....+..-|..+...|+-.+-..+-.++++.- +....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 4444555555566666777777777766665 23444444555556666666666666666666541 234566666666
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHHcC-HHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCC
Q 046719 598 GYSSLGSSQKCLELYENMKKLGIKPS-LRTYHPLLSGCIREG-IVAVEKLFNEMLQI--NLVPDLLVYNALIHCYAEHGD 673 (808)
Q Consensus 598 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 673 (808)
.|...|+..+|.++|.+... +.|. ...|..+...+.-.+ -++|...+..+.+. |. --+..| +.--|.+.++
T Consensus 321 YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~-hlP~LY--lgmey~~t~n 395 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC-HLPSLY--LGMEYMRTNN 395 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC-cchHHH--HHHHHHHhcc
Confidence 66666777777777766653 2333 445666666666666 66666666655542 11 111222 3334666777
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHccCChhH
Q 046719 674 VQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVK--GLIP----KADTYNILVKGYCNLKDFGG 746 (808)
Q Consensus 674 ~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p----~~~~~~~l~~~~~~~g~~~~ 746 (808)
++-|.++|.++.. +-| |+..++-++......+.+.+|..+|+..+.. .+.+ -..+++.|+.+|.+.+++++
T Consensus 396 ~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 396 LKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 7777777777766 444 5557777777777777777777777776521 0111 12346677777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 747 AYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 747 A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
|+..+++++...++ +..++..++.+|...|+.+.|+..|++.+-..|++..
T Consensus 474 AI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 474 AIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 77777777777666 7777777777777777777777777777777777644
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=4.7e-14 Score=143.51 Aligned_cols=295 Identities=12% Similarity=0.058 Sum_probs=223.2
Q ss_pred CHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 046719 499 KLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKRE--MGPTLVTFNALINGLCKKGRVMEAEDM 576 (808)
Q Consensus 499 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 576 (808)
+..+|...|..+... +.-.......+..+|...+++++|.++|+.+.+.. ...+..+|.+.+--+-+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456777788775444 33244566777888888888888888888887652 11256677776644322 112222
Q ss_pred -HHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCC
Q 046719 577 -LPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKP-SLRTYHPLLSGCIREG-IVAVEKLFNEMLQIN 653 (808)
Q Consensus 577 -~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~ 653 (808)
-+.+.+.. +..+.+|.++.++|.-+++.+.|++.|++.+. +.| ...+|+.+..-+.... ++.|...|+..+...
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 23333332 34578999999999999999999999999886 455 4667776666666666 899999999987642
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHH
Q 046719 654 LVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTY 731 (808)
Q Consensus 654 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~ 731 (808)
+.+-..|..++-.|.+.++++.|.-.|+++.+ +.| +.+....++..+.+.|+.++|+++++++.. +.| |+-.-
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~ 560 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCK 560 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhH
Confidence 22345667788889999999999999999998 566 566778899999999999999999999987 445 56666
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCchhhhHhhhc
Q 046719 732 NILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWTNEDQSAVAK 807 (808)
Q Consensus 732 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (808)
...+..+...+++++|+..++++.+.-|+ +..++..++..|.+.|+.+.|+.-|.=+.+..|+.-...+.-+.++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i~~k~~~~~ 635 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQIQIKAAIER 635 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchhhHHHHhhh
Confidence 67788888999999999999999988777 8889999999999999999999999999988888666444444444
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=1.1e-15 Score=152.85 Aligned_cols=260 Identities=18% Similarity=0.180 Sum_probs=107.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 046719 524 MLIDGSCTMGRIKDAFKFFDEMVKRE-MGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSL 602 (808)
Q Consensus 524 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 602 (808)
.+...+...|++++|++++++..... .+.+...|..+.......+++++|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 33555566666666666665443332 1223444444455555566666666666666654322 33444455544 466
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHH
Q 046719 603 GSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQIN-LVPDLLVYNALIHCYAEHGDVQKALVL 680 (808)
Q Consensus 603 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 680 (808)
+++++|.+++.+..+. .++...+..++..+...+ ++++.++++++.... .+.+...|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666676666655543 244455555566666666 667777766655422 345677888888899999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 681 HSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 681 ~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
+++.++ ..|+ ....+.+++.+...|+.+++.++++...+.. ..|+..|..++.++...|+.++|+.+++++.+..+
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 999998 4664 5578889999999999999888888877642 45667788899999999999999999999998877
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 760 IPSFCIYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 760 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
. |+.....++.+|...|+.++|..+..++..
T Consensus 246 ~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 D-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T--HHHHHHHHHHHT-----------------
T ss_pred c-cccccccccccccccccccccccccccccc
Confidence 6 899999999999999999999999887754
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=9.8e-13 Score=138.43 Aligned_cols=288 Identities=11% Similarity=0.024 Sum_probs=173.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcch-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 046719 496 KDCKLLEAEIVLKDMENRGVLPNA-QIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAE 574 (808)
Q Consensus 496 ~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 574 (808)
..|+++.|.+.+.+..+. .|+. ..+-....+....|+++.|.+.+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 345555555555554443 2222 2223334445555666666666665554321111122233355555566666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHH----HHHHHHHcC-HHHHHHHHHHH
Q 046719 575 DMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHP----LLSGCIREG-IVAVEKLFNEM 649 (808)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~~-~~~a~~~~~~~ 649 (808)
..++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+.. +...+.. ...+....+ .+++.+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666666543 223445555666666666666666666666655432 2222211 111111122 22233344444
Q ss_pred HHCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 046719 650 LQINL---VPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMT---YNSLIFGHLREGKLSEVKELVNDMKVKG 723 (808)
Q Consensus 650 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~g 723 (808)
.+... +.+...+..++..+...|+.++|.+.+++..+. .||... ...........++.+.+.+.+++..+
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk-- 327 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK-- 327 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--
Confidence 44321 237788888899999999999999999999984 454432 12233333456788889999988887
Q ss_pred CCC-CH--HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 724 LIP-KA--DTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 724 ~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
..| |+ .....++..+.+.|++++|.++|+++......|+...+..++..+.+.|+.++|.+++++.+.
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345 44 566789999999999999999999644444467777788999999999999999999998755
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.4e-11 Score=121.37 Aligned_cols=273 Identities=15% Similarity=0.118 Sum_probs=212.6
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 046719 481 KPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNAL 560 (808)
Q Consensus 481 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 560 (808)
..+......-.+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-.++.+. .+....+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 4456666666777788889999999999888763 446666666677888889888888888888875 45578889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-
Q 046719 561 INGLCKKGRVMEAEDMLPQITSSGLNPD-VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG- 638 (808)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~- 638 (808)
.--|.-.|+.++|++.|.+.... .|. ...|..+...|+-.|.-++|+..|...-+. ++-...-+..+.--|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhcc
Confidence 88888889999999999988763 333 357899999999999999999999887764 2222222333344466666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHhHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQ--GIRP----DKMTYNSLIFGHLREGKLSEV 712 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p----d~~~~~~l~~~~~~~g~~~~A 712 (808)
.+-|.+.|.+..... +.|+..++-+.-.....+.+.+|..+|+..++. .+.+ -..+++.|+.+|.+.+++++|
T Consensus 396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999999988763 667888888888888889999999999988732 0111 234688999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 713 KELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 713 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+..+++.+.. .+.+..++..++.+|...|+++.|+..|.+++...|.
T Consensus 475 I~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 475 IDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 9999999874 3447888999999999999999999999999966444
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=2.5e-12 Score=134.43 Aligned_cols=252 Identities=10% Similarity=0.088 Sum_probs=157.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHH
Q 046719 529 SCTMGRIKDAFKFFDEMVKREMGPTLVTF--NALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQ 606 (808)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 606 (808)
..+.|+++.|...+.++.+. .|+.... ......+...|++++|...++++.+.. +-+......+...|.+.|+++
T Consensus 128 A~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 128 AQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHH
Confidence 34555555555555555543 2222211 122344555555555555555555542 223444555555555556666
Q ss_pred HHHHHHHHHHHCCCCcCHH-------hHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 046719 607 KCLELYENMKKLGIKPSLR-------TYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKAL 678 (808)
Q Consensus 607 ~A~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 678 (808)
+|.+++..+.+.+..++.. +|..++....... .+...++++.+.+. .+.++.....++..+...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 6666655555543221111 1111121111112 34444444444332 2456777888888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 679 VLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 679 ~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
+.+++..+. +||... .++.+....++.+++.+.+++..+. .| |+..+..++..+.+.|++++|.+.|+++.+.
T Consensus 284 ~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 284 QIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999988883 555532 2344445668889999999988874 45 5667788899999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 758 GFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 758 ~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
.|+...+..++.++.+.|+.++|..++++.+..
T Consensus 358 --~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 358 --RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 467777888999999999999999999888764
No 49
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.61 E-value=4.7e-10 Score=116.48 Aligned_cols=133 Identities=16% Similarity=0.048 Sum_probs=115.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKG 737 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 737 (808)
.|......+.+.++.++|...+.++.. +.| ....|...+..+...|.+++|.+.|..+.. +.|+ ......++.+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHH
Confidence 455667788899999999988888877 444 445788888999999999999999999987 7786 5667899999
Q ss_pred HHccCChhHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 046719 738 YCNLKDFGGAYI--WYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 738 ~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 797 (808)
+.+.|+..-|.. ++..+++.++. +.+.|..|+..+.+.|+.++|..-|....+....++
T Consensus 728 lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 999999888888 99999999988 999999999999999999999999999998776544
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=4.3e-11 Score=116.48 Aligned_cols=311 Identities=13% Similarity=0.134 Sum_probs=212.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--cchhHHHHHHHHHHhcC
Q 046719 456 IDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVL--PNAQIYNMLIDGSCTMG 533 (808)
Q Consensus 456 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g 533 (808)
..++-...+.+++..-.......|++.+...-+....+.-...++++|+.+|+++.+.++- .|..+|+.++-. +..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhh
Confidence 3445555566677766666666666666555555555566667777777777777765321 145566555432 222
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 046719 534 RIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYE 613 (808)
Q Consensus 534 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 613 (808)
+-. +.++-.-...-.+--+.|...+.+-|.-.++.++|..+|+..++.+ +.....|+.+..-|....+...|++-|+
T Consensus 312 ~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 211 1111111111011234566667777777888888888888888743 2234678888888888888888888888
Q ss_pred HHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 046719 614 NMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD 692 (808)
Q Consensus 614 ~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd 692 (808)
..++- .+-|...|..|.++|.-.+ ..-|.-.|++..... +.|..+|.+|+++|.+.++.++|++.|++.+..| ..+
T Consensus 389 rAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 88874 3557788888888888888 777888888888753 6689999999999999999999999999999865 335
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHH
Q 046719 693 KMTYNSLIFGHLREGKLSEVKELVNDMKVK----GL-IPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIY 766 (808)
Q Consensus 693 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 766 (808)
...+..|+..|-+.++.++|..++++.++. |. .|. ......|..-+.+.+++++|..+....... .+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~----- 538 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ET----- 538 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--Cc-----
Confidence 578999999999999999999999987652 22 221 222334666677889999998877776643 22
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 767 NELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 767 ~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
..+||..+++++.+.
T Consensus 539 -----------e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 539 -----------ECEEAKALLREIRKI 553 (559)
T ss_pred -----------hHHHHHHHHHHHHHh
Confidence 235677777666653
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=9.1e-12 Score=130.28 Aligned_cols=251 Identities=11% Similarity=0.042 Sum_probs=156.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcchhHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 046719 495 CKDCKLLEAEIVLKDMENRGVLPNAQIY--NMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVME 572 (808)
Q Consensus 495 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 572 (808)
.+.|+++.|...+.++.+. .|+.... ......+...|+++.|...++++.+.. +.+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555555442 2222211 122344555556666666655555542 2245555555555666666666
Q ss_pred HHHHHHHHHhCCCCCCH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHH
Q 046719 573 AEDMLPQITSSGLNPDV-------ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEK 644 (808)
Q Consensus 573 A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~ 644 (808)
|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.+......+...+...| .++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666665554332111 12222333333334445555555555432 2445666666777777777 777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 046719 645 LFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKG 723 (808)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 723 (808)
.+++..+. ++|.... ++.+....++.+++++..++..+. .| |...+..++..+.+.|++++|.+.|+++.+
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~-- 356 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK-- 356 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 77777763 4444222 233344568999999999999885 45 445678899999999999999999999988
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 724 LIPKADTYNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 724 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
..|+..++..+..++.+.|+.++|..+|++.+..
T Consensus 357 ~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 357 QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6799888889999999999999999999988753
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=1.3e-11 Score=120.81 Aligned_cols=53 Identities=25% Similarity=0.227 Sum_probs=30.4
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 046719 284 FCKAKRMEEAKSVCKEMEAHGFDPD-GFTYSMLFDGYSKCGDGEGVMALYEELSGR 338 (808)
Q Consensus 284 ~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 338 (808)
|.+.|.+++|++.|.+.++. .|| +..|.....+|...|+++++.+-..+.++.
T Consensus 125 ~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl 178 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL 178 (606)
T ss_pred hhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 44556666666666666553 444 555555666666666666666555555443
No 53
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=2.5e-10 Score=107.07 Aligned_cols=420 Identities=13% Similarity=0.103 Sum_probs=238.9
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChH
Q 046719 282 GGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVE 361 (808)
Q Consensus 282 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 361 (808)
..+...|++++|...+..+... -.++...+..|..++.-.|.+.+|.++-+...+ ++.....|.+...+.|+-+
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHH
Confidence 3344566666666666655543 244555566666666666666666665554332 1222223344444555555
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHH
Q 046719 362 IAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNT-LIDKFCELGEMDKAEEWVKRM 440 (808)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~ 440 (808)
+-..+...+.+ ...--.++.......-.+.+|++++......+ |+-...|. +.-+|.+..-++.+.++++-.
T Consensus 139 ~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 139 RILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred HHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 54444444332 11223344444444455677777777776542 23333332 233556666777777777766
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCC
Q 046719 441 LEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKD-----CKLLEAEIVLKDMENRGV 515 (808)
Q Consensus 441 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----~~~~~A~~~~~~m~~~~~ 515 (808)
.++ ++-+....|.......+.=.-..|.+-.+++.+.+-.. ...+.-+++. .+-+.|++++-.+.+.
T Consensus 212 L~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~-- 283 (557)
T KOG3785|consen 212 LRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH-- 283 (557)
T ss_pred HHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhh--
Confidence 654 22244455555444444333333444444443322111 1122233333 3346677777666553
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H----HhcCChHHHHHHHHHHHhCCCCCCH-
Q 046719 516 LPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALING-L----CKKGRVMEAEDMLPQITSSGLNPDV- 589 (808)
Q Consensus 516 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~----~~~g~~~~A~~~~~~~~~~~~~~~~- 589 (808)
.| ..--.|+--|.+.+++.+|..+.+++.. ..|-......++.+ + .....+.-|.+.|+-.-+++..-|.
T Consensus 284 IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI 359 (557)
T KOG3785|consen 284 IP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI 359 (557)
T ss_pred Ch--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc
Confidence 22 2334456667888999999888766532 12323333322221 1 1122355666777666665555443
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 590 ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCY 668 (808)
Q Consensus 590 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 668 (808)
.--.++..++.-..++++++.+++.+..--...|...++ +.++.+..| +.+|+++|-......+..+......|..+|
T Consensus 360 pGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCy 438 (557)
T KOG3785|consen 360 PGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCY 438 (557)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHH
Confidence 345667777777888999999999888754444444444 567777777 999999998876544444444445667889
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRPDKMT-YNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYN 732 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~pd~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 732 (808)
.+++..+-|..++-++- -+.+..+ ...++.-|.+.+.+=-|.+.|+.+.. ..|++..|.
T Consensus 439 i~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 439 IRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred HhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC
Confidence 99999999988765542 2334443 44556788899999888888988877 677777763
No 54
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.58 E-value=5.1e-10 Score=113.84 Aligned_cols=459 Identities=15% Similarity=0.138 Sum_probs=275.5
Q ss_pred CCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 046719 322 CGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLA 401 (808)
Q Consensus 322 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 401 (808)
.+++...+++.+.++++. +.-..+.....-.++..|+.++|....+..+..++. +.++|..+.-.+....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHH
Confidence 345555555555555432 112222222223345567777887777777766555 667888877777777888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-C
Q 046719 402 IQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSG-M 480 (808)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~ 480 (808)
|......+.. |...|..+.-.-.+.++++..........+... .....|..+..++.-.|++..|..++++..... -
T Consensus 98 y~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8888776543 566666666666667777777666666665421 244567777777777888888888888876653 2
Q ss_pred CCCHhhHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 046719 481 KPNVVSYGSLI------NWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTL 554 (808)
Q Consensus 481 ~~~~~~~~~ll------~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 554 (808)
.|+...+.... ......|..++|.+.+..-... +......-.+-...+.+.+++++|..++..++.. .||.
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn 252 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDN 252 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cchh
Confidence 45555544332 2334567777777766554432 2212223344566777888899999998888876 3444
Q ss_pred HH-HHHHHHHHHhcCChHHHH-HHHHHHHhCCCCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 046719 555 VT-FNALINGLCKKGRVMEAE-DMLPQITSSGLNPDVIT-YNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLL 631 (808)
Q Consensus 555 ~~-~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 631 (808)
.- |-.+..++.+-.+.-++. .+|....+. .|-... -..=++......-.+..-+++..+.+.|+++--..+.++.
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy 330 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY 330 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH
Confidence 44 444444554333333333 555555442 111110 0000111111223344555666667777765444444433
Q ss_pred HHHHHcC-HHHH-HHHHHHHHHCC----------CCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HH
Q 046719 632 SGCIREG-IVAV-EKLFNEMLQIN----------LVPDLL--VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TY 696 (808)
Q Consensus 632 ~~~~~~~-~~~a-~~~~~~~~~~~----------~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~ 696 (808)
.--.+.. .++- ..+...+-..| -+|... ++..++..+-+.|+++.|...++.++.. .|..+ -|
T Consensus 331 k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly 408 (700)
T KOG1156|consen 331 KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELY 408 (700)
T ss_pred hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHH
Confidence 3211222 1111 11111111110 144444 3456778888999999999999999884 66665 67
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC--CH----HHHHHH-
Q 046719 697 NSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP--SF----CIYNEL- 769 (808)
Q Consensus 697 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~----~~~~~l- 769 (808)
..-+..+.+.|.+++|..++++..+.+ .+|...-..-+.-..+.++.++|.++.....+.|... +. ..|..+
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHh
Confidence 777899999999999999999998854 3454443355666778999999999998888766410 11 122222
Q ss_pred -HHHHHhcCChhHHHHHHHHHHHc
Q 046719 770 -TNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 770 -~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
+.+|.++|++.+|++-|..+.+.
T Consensus 488 ~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 488 DGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHH
Confidence 56788999999999988877653
No 55
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=1e-11 Score=130.76 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=64.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHH
Q 046719 146 RCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEK 225 (808)
Q Consensus 146 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 225 (808)
..|+++.|...+.+..+..+. +...+-....+..+.|+++.|...+.++.+..+.+...+.-.....+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 346666666666555543322 2223333444455556666666666665543222222223333455555666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046719 226 LFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKV 270 (808)
Q Consensus 226 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 270 (808)
.++++.+..+. +..++..+...+.+.|++++|.++++.+.+.++
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 66666555322 444555555666666666666666666655543
No 56
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=2.2e-14 Score=143.39 Aligned_cols=260 Identities=18% Similarity=0.176 Sum_probs=104.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 046719 489 SLINWLCKDCKLLEAEIVLKDMENRG-VLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKK 567 (808)
Q Consensus 489 ~ll~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 567 (808)
.+...+.+.|++++|.++++...... .+.|...|..+.......++.+.|+..++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34555666777777777775543332 2234455555666666777888888888888765433 45556666666 677
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHHcC-HHHHHHH
Q 046719 568 GRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLG-IKPSLRTYHPLLSGCIREG-IVAVEKL 645 (808)
Q Consensus 568 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~-~~~a~~~ 645 (808)
+++++|.+++....+. .++...+..++..+...++++++.++++++.... .+++...|..+...+.+.| .++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7888888877776554 3455666777777788888888888888876532 2345666677777778888 8888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 046719 646 FNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLI 725 (808)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 725 (808)
+++.++.. +.|....+.+++.+...|+.+++.++++...+. .+.|...+..++.++...|+.++|..++++..+ ..
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~ 244 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LN 244 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HS
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHHHhcccccccccccccccccc--cc
Confidence 88888753 335778888999999999999999998888775 244566788999999999999999999999887 34
Q ss_pred C-CHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 726 P-KADTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 726 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
| |+.+...++.++...|+.++|..+++++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 5 778888999999999999999999888764
No 57
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.55 E-value=3.1e-08 Score=101.22 Aligned_cols=625 Identities=12% Similarity=0.069 Sum_probs=309.1
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHH
Q 046719 110 SSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRAC 189 (808)
Q Consensus 110 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 189 (808)
-..+.+...+.+.+.+++ ..+.-.++....+-.+...|+-++|....+..++..+. +.+.|..+.-.+-...++++|+
T Consensus 18 yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHH
Confidence 345566666666666665 23333445555555556667777777777666665444 6666766666665666777777
Q ss_pred HHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046719 190 EIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDK 269 (808)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 269 (808)
+.|..+.+.+. .|...|.-+.-.-.+.|+++..........+..+ .....|...+.++.-.|++..|..++++..+..
T Consensus 96 Kcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 96 KCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777766543 2555665555555566666666666555555422 144556666666666667777766666665542
Q ss_pred -CCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHH
Q 046719 270 -VEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCS 348 (808)
Q Consensus 270 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 348 (808)
-.|+...|......+.+ .....+.|..++|.+.+......-+ .....-.
T Consensus 174 ~~~~s~~~~e~se~~Ly~-----------------------------n~i~~E~g~~q~ale~L~~~e~~i~-Dkla~~e 223 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQ-----------------------------NQILIEAGSLQKALEHLLDNEKQIV-DKLAFEE 223 (700)
T ss_pred ccCCCHHHHHHHHHHHHH-----------------------------HHHHHHcccHHHHHHHHHhhhhHHH-HHHHHhh
Confidence 13344333322211110 0112233333333333332221100 0000011
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046719 349 ILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFN-TIVSGYCRTGDLNRAM-LAIQQMENHGLAPNCITFNTLIDKFCE 426 (808)
Q Consensus 349 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~ 426 (808)
.-...+.+.+++++|..++..++.++ ||...|. .+..++.+..+..++. .+|....+. + |-...-.-+-.....
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y-~r~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-Y-PRHECPRRLPLSVLN 299 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-C-cccccchhccHHHhC
Confidence 12234455566666666666666542 3333333 2333332222222232 444443332 1 111100000000011
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HCC----------CCCCHhh--HHH
Q 046719 427 -LGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEME----NSG----------MKPNVVS--YGS 489 (808)
Q Consensus 427 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~----~~~----------~~~~~~~--~~~ 489 (808)
..-.+....++..+.+.|+++ ++..+...|-.....+-..++.-.+. ..| -+|.+.. +-.
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~ 376 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYF 376 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHH
Confidence 111222333444455555442 22233333322111111111111111 110 1444433 345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 046719 490 LINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGR 569 (808)
Q Consensus 490 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 569 (808)
++..+-+.|+++.|...++...++ .+.-...|..=.+.+...|++++|..++++..+.+ .+|...-.--+.-..+.++
T Consensus 377 laqh~D~~g~~~~A~~yId~AIdH-TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAIDH-TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccc
Confidence 566777888888888888888765 22233456566677888888888888888887753 2354443345556667888
Q ss_pred hHHHHHHHHHHHhCCCCCCHH--------HHHHH--HHHHHcCCCHHHHHHHHHHHHHC--CCCcCHHhHHHHHHHHHHc
Q 046719 570 VMEAEDMLPQITSSGLNPDVI--------TYNSL--ISGYSSLGSSQKCLELYENMKKL--GIKPSLRTYHPLLSGCIRE 637 (808)
Q Consensus 570 ~~~A~~~~~~~~~~~~~~~~~--------~~~~l--~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~ 637 (808)
.++|.++.......|. +.. .|-.+ ..+|.+.|++..|++-|..+.+. .+..|..-|. .-|.+.
T Consensus 455 i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfh---tyc~rk 529 (700)
T KOG1156|consen 455 IEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFH---TYCMRK 529 (700)
T ss_pred cHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHH---HHHHhc
Confidence 8888888888877664 221 22222 34667777777777776666543 1112222221 224455
Q ss_pred C-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CC-CCHHHHHHHH----HHHHhc-CCH
Q 046719 638 G-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQG-IR-PDKMTYNSLI----FGHLRE-GKL 709 (808)
Q Consensus 638 ~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~-pd~~~~~~l~----~~~~~~-g~~ 709 (808)
| +..=.++++---...-.|. .+. -...|+++|=+|.+.. .. +.......+- ....++ .+-
T Consensus 530 ~tlrsYv~ll~~~d~L~~~p~--y~~----------Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~ 597 (700)
T KOG1156|consen 530 GTLRSYVELLEWEDNLRSSPY--YLR----------AAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAK 597 (700)
T ss_pred CcHHHHHHHHHHHHhhccChH--HHH----------HHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHH
Confidence 5 3333332221111000111 110 1234566666665532 00 0000111111 111111 111
Q ss_pred hHHHHHHHHHH---------HCC--CCCCHHHHHHHHHHHHccCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 710 SEVKELVNDMK---------VKG--LIPKADTYNILVKGYCNLKD-FGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG 777 (808)
Q Consensus 710 ~~A~~~~~~~~---------~~g--~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 777 (808)
.+|...-+.+. +.| ..+|.. .++..+.+..+ .++|.+++......+.. +...+..-.+.|.+.|
T Consensus 598 kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~-~~~~~iL~~ely~rk~ 673 (700)
T KOG1156|consen 598 KKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKE-KGETYILSFELYYRKG 673 (700)
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhccc-chhhhhhhHHHHHHHH
Confidence 22222222221 112 223433 34555556554 67899999988887766 8888888899999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCc
Q 046719 778 KLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 778 ~~~~A~~~~~~~~~~~~~~~~ 798 (808)
++--|.+..+++....+.+..
T Consensus 674 k~~l~~~~~~~~~~~~~~~~~ 694 (700)
T KOG1156|consen 674 KFLLALACLNNAEGIHGTHPS 694 (700)
T ss_pred HHHHHHHHHHhhhhhcCCCCc
Confidence 999999999998876666544
No 58
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.3e-12 Score=133.26 Aligned_cols=284 Identities=13% Similarity=0.125 Sum_probs=189.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CcchhHHHHHHHHHHhcCCHHHHHHHH
Q 046719 465 FDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGV--LPNAQIYNMLIDGSCTMGRIKDAFKFF 542 (808)
Q Consensus 465 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 542 (808)
..+|...|..+... +....++...+..+|...+++++|..+|+.+++... .-+..+|.+.+-.+-+ +-++..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45666666663332 333345555666666666666666666666665421 1144455555433211 1122222
Q ss_pred -HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 046719 543 -DEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNP-DVITYNSLISGYSSLGSSQKCLELYENMKKLGI 620 (808)
Q Consensus 543 -~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 620 (808)
+.++.. .+..+.+|.++.+.|.-+++.+.|++.|++.++. .| ...+|+.+..-+.....+|.|...|+..+. +
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~ 484 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--V 484 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--C
Confidence 222222 2335667777777777777777777777777763 34 456676666666677777777777776653 2
Q ss_pred CcC-HHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHH
Q 046719 621 KPS-LRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYN 697 (808)
Q Consensus 621 ~p~-~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~ 697 (808)
.|. ...|.-+.-.|.+.+ ++.|+--|+++++.+ +.+.++...+...+-+.|+.|+|+.+++++... .| |+..-.
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKY 561 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHH
Confidence 222 233444445566666 777777777777754 446677778888889999999999999999874 44 555666
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSF 763 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 763 (808)
..+..+...+++++|...++++++ +.|+ ...+..++..|.+.|+.+.|+.-|.-|.+.+|++.-
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 788888899999999999999988 7775 566889999999999999999999999988776543
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=3.8e-10 Score=105.94 Aligned_cols=450 Identities=14% Similarity=0.092 Sum_probs=273.5
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCCh
Q 046719 281 LGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKV 360 (808)
Q Consensus 281 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 360 (808)
+.-+....++..|+.+++.-...+-.....+-.-+..++...|++++|...|+.+.... .++...+..|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 34445566777777777665543322222334446678889999999999999988764 34555666677777778999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046719 361 EIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRM 440 (808)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 440 (808)
.+|..+-.+..+ +.-.-..+...-.+.|+-++-..+.+.+.+. ..--.+|.......-.+.+|++++++.
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999888766432 3334445555666778877777766666542 233344555555566789999999999
Q ss_pred HHcCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcch
Q 046719 441 LEKGVSPNVKTNNTLI-DGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNA 519 (808)
Q Consensus 441 ~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~ 519 (808)
... .|+....|..+ -+|.+..-++-+.++++-.... ++.++...|.......+.=+-..|..-.+++.+.+...
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-- 252 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-- 252 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--
Confidence 875 44555555544 3677888888888888877664 45566667766655555433333444444444432111
Q ss_pred hHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 046719 520 QIYNMLIDGSCTM-----GRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNS 594 (808)
Q Consensus 520 ~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 594 (808)
| ..+.-+++. .+-+.|++++-.+.+. .| ..-..|+-.|.+.+++++|..+..++.-. .| .-|..
T Consensus 253 --~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP--~Eyil 321 (557)
T KOG3785|consen 253 --Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TP--YEYIL 321 (557)
T ss_pred --c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--Ch--HHHHH
Confidence 1 122233333 2346778877666653 22 23345566688899999999887766421 22 22221
Q ss_pred HHHHHHcCC-------CHHHHHHHHHHHHHCCCCcCHH-hHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 595 LISGYSSLG-------SSQKCLELYENMKKLGIKPSLR-TYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALI 665 (808)
Q Consensus 595 l~~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 665 (808)
-.-.++..| ...-|.+.|+-.-+.+..-|.. --..+...+.-.. +++..-.++..... +..|....-.+.
T Consensus 322 Kgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~A 400 (557)
T KOG3785|consen 322 KGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLA 400 (557)
T ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHH
Confidence 111222333 3445666666554443332211 1112222222222 66666666666554 333333344578
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCC
Q 046719 666 HCYAEHGDVQKALVLHSEMVDQGIRPDKMTYN-SLIFGHLREGKLSEVKELVNDMKVKGLIPKA-DTYNILVKGYCNLKD 743 (808)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~ 743 (808)
.+++..|++.+|.++|-++..-.++ |..+|. .|+.+|.+.++.+.|++++-++- -..+. .....++.-|.+++.
T Consensus 401 QAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~e 476 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANE 476 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999887643333 444444 56788889999998887765542 12222 234466777889999
Q ss_pred hhHHHHHHHHHHHCCCCCC
Q 046719 744 FGGAYIWYREMFENGFIPS 762 (808)
Q Consensus 744 ~~~A~~~~~~~~~~~~~~~ 762 (808)
+--|.+.|+.+...+|.|.
T Consensus 477 FyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 477 FYYAAKAFDELEILDPTPE 495 (557)
T ss_pred HHHHHHhhhHHHccCCCcc
Confidence 9888888888877765543
No 60
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=2.3e-08 Score=106.39 Aligned_cols=179 Identities=14% Similarity=0.103 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--CcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 588 DVITYNSLISGYSSLGSSQKCLELYENMKKLGI--KPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALI 665 (808)
Q Consensus 588 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 665 (808)
|+..-..-+.++...+-+.+-+++++++.-.+- ..+...-+.|+-...+.......+..+++-..+ .|+ +.
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD-a~~------ia 1055 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD-APD------IA 1055 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC-chh------HH
Confidence 444455566777778888888888888764211 111111222222223333444445555544332 232 22
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 046719 666 HCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFG 745 (808)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 745 (808)
.....++-++||..+|++.-- +....+.|+. .-+.++.|.++.++.- .+..|..++.+-.+.|...
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchH
Confidence 334445556666666655321 2222222222 1233344444433321 1234444444444444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 746 GAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 746 ~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
+|++-|-++ .|+..|..+++...+.|+|++-.+++.-+.++.
T Consensus 1122 dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1122 DAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred HHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 444444332 134444444444444444444444444444433
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=5.7e-11 Score=110.28 Aligned_cols=289 Identities=17% Similarity=0.140 Sum_probs=199.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHH
Q 046719 497 DCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPT---LVTFNALINGLCKKGRVMEA 573 (808)
Q Consensus 497 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 573 (808)
+++.++|..+|-+|.+.+.. +..+--+|.+.|...|.+|.|+.+...+.++.--+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45677777777777764222 445566777888888888888888887776521111 22344566667788888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCH----HhHHHHHHHHHHcC-HHHHHHHHHH
Q 046719 574 EDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSL----RTYHPLLSGCIREG-IVAVEKLFNE 648 (808)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~-~~~a~~~~~~ 648 (808)
+.+|..+.+.+ .--......|+..|-...+|++|++.-+++.+.+-.+.. ..|.-+........ .+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 88888888643 223456677788888888888888888888776543332 12333333333344 7888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 046719 649 MLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM--TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP 726 (808)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 726 (808)
..+.+ +.....-..+.+.+...|+++.|.+.++.+.+. .|+.. +...|..+|.+.|+.++...++.++.+ ..+
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~--~~~ 280 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME--TNT 280 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--ccC
Confidence 88754 334445556778888999999999999999885 45543 677889999999999999999999887 344
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCChhHHHHHHHHHHHcCC
Q 046719 727 KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLK---QEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 727 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~g~~~~A~~~~~~~~~~~~ 794 (808)
+...-..+...-....-.+.|..++.+-+.. +|+...++.|+.... ..|++++-+..+++|.....
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 4444445555555555567777777666655 588888888877653 34667888888888876543
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.53 E-value=3.4e-09 Score=110.25 Aligned_cols=125 Identities=16% Similarity=0.101 Sum_probs=100.7
Q ss_pred HHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC
Q 046719 631 LSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGK 708 (808)
Q Consensus 631 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~ 708 (808)
...+.+.+ .+++...+.+..... +.....|......+...|..++|.+.|..... +.||.+ +..+++.++.+.|+
T Consensus 657 a~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~ 733 (799)
T KOG4162|consen 657 ADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGS 733 (799)
T ss_pred HHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCC
Confidence 33455556 677776666666542 33456677777788889999999999999998 678765 88999999999998
Q ss_pred HhHHHH--HHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 709 LSEVKE--LVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 709 ~~~A~~--~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
..-|.. ++..+.+ +.| ++..|..++..+.+.|+.+.|.+.|+.+.+....
T Consensus 734 ~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 734 PRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred cchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 877777 9999998 556 7899999999999999999999999999886543
No 63
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.6e-07 Score=100.24 Aligned_cols=82 Identities=15% Similarity=0.170 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFI-PSFCIYNELTNGL 773 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~l 773 (808)
||.....+|...+.+.-| ++....+.....-..-++.-|...|-++|-+.+++..+ |.. .....++.|+-.|
T Consensus 1251 tWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLY 1323 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILY 1323 (1666)
T ss_pred HHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHH
Confidence 455555555544433322 22222233334445566666667777777777776665 222 1345556666555
Q ss_pred HhcCChhHHHH
Q 046719 774 KQEGKLKEAQI 784 (808)
Q Consensus 774 ~~~g~~~~A~~ 784 (808)
.+- +.++-.+
T Consensus 1324 sky-kp~km~E 1333 (1666)
T KOG0985|consen 1324 SKY-KPEKMME 1333 (1666)
T ss_pred Hhc-CHHHHHH
Confidence 544 4444333
No 64
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=1.9e-10 Score=110.53 Aligned_cols=285 Identities=16% Similarity=0.151 Sum_probs=173.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 046719 497 DCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDM 576 (808)
Q Consensus 497 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 576 (808)
.|++.+|+++..+..+.+.. ....|..-+.+.-..|+.+.+-.++.++.+..-.++....-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 35555555555554444322 22334444445555555555555555555442233444444555555555666666555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCH-------HhHHHHHHHHHHcC-HHHHHHHHHH
Q 046719 577 LPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSL-------RTYHPLLSGCIREG-IVAVEKLFNE 648 (808)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~-~~~a~~~~~~ 648 (808)
++++.+.+ +.+.........+|.+.|++.....++.++.+.+.-.+. .++..++.-....+ .+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 55555543 223444555555566666666666666666555443332 23444444433333 3443444444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH
Q 046719 649 MLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA 728 (808)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 728 (808)
...+ ...++..-.+++.-+.++|+.++|.++.++..+++..|.. .....+.+-++.+.-++..++..+. ...++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 4332 3445666677777888889999999988888887766652 2223455666667667777776553 22345
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
..+..|+..|.+.+.|.+|...++.+++. .|+...|..++..+.+.|+.++|....++.+-
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 77888888899999999999999888765 57788888889999999999999888888773
No 65
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=2.8e-10 Score=109.35 Aligned_cols=292 Identities=15% Similarity=0.153 Sum_probs=152.0
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHH
Q 046719 148 NQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLF 227 (808)
Q Consensus 148 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 227 (808)
|+|..|..+..+..+.+.. ....|.....+--+.|+.+.|-.+..++.+....++..++-+........|++..|..-.
T Consensus 98 G~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5555555555554444333 333444444455555556666555555555433444455555555555555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 046719 228 DEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDP 307 (808)
Q Consensus 228 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 307 (808)
+.+.+.+.. +..........|.+.|++..+..++..+.+.|.-.+...-. .
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------l 227 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------L 227 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------H
Confidence 555554332 44445555555555555555555555555554433321000 0
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 046719 308 DGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVS 387 (808)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 387 (808)
...+|..+++-....+..+.-...+++...+ .+.++..-..++.-+.++|..++|.++..+..+++.+|. ... .-
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~ 302 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LI 302 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HH
Confidence 0123444444444444444444444444332 222334444455555566666666666666665554443 111 11
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 046719 388 GYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDK 467 (808)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (808)
...+.++.+.-++..++..+.... ++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHH
Confidence 233455555555555555554222 4456666666666666666666666655544 4566666666666666666666
Q ss_pred HHHHHHHHHH
Q 046719 468 CFQILEEMEN 477 (808)
Q Consensus 468 a~~~~~~m~~ 477 (808)
|.++.++...
T Consensus 380 A~~~r~e~L~ 389 (400)
T COG3071 380 AEQVRREALL 389 (400)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 66
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=4.5e-10 Score=104.47 Aligned_cols=287 Identities=18% Similarity=0.170 Sum_probs=147.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHH
Q 046719 393 GDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSP---NVKTNNTLIDGYGRMGHFDKCF 469 (808)
Q Consensus 393 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~ 469 (808)
.+.++|.++|-+|.+.... +..+-.+|.+.|.+.|++|.|++++..+.+..--+ .......|..-|...|-+|.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4445555555555543211 33333445555555555555555555554431000 0122334444555555555555
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc----hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046719 470 QILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPN----AQIYNMLIDGSCTMGRIKDAFKFFDEM 545 (808)
Q Consensus 470 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 545 (808)
.+|..+.+.+ .--......|+..|-+..+|++|+++-+++.+.+..+. ...|.-+...+....+++.|+.++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 5555554422 11233444555555555555555555555554433322 123555666666666666666666666
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHH
Q 046719 546 VKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLR 625 (808)
Q Consensus 546 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 625 (808)
.+.+.. ++..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|...|+.++...++..+.+.. ++..
T Consensus 207 lqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~ 283 (389)
T COG2956 207 LQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGAD 283 (389)
T ss_pred HhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCcc
Confidence 665322 3333444555666667777777777766665322223455666667777777777777776666542 3333
Q ss_pred hHHHHHHHH-HHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---ccCCHHHHHHHHHHHHH
Q 046719 626 TYHPLLSGC-IREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYA---EHGDVQKALVLHSEMVD 686 (808)
Q Consensus 626 ~~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~ 686 (808)
....+.... ...|.+.|.....+-+.. .|+...+..+++... ..|...+-+.+++.|+.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 333333322 233355555555444442 466666666665543 23455666666666654
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=2.7e-11 Score=112.26 Aligned_cols=234 Identities=15% Similarity=0.067 Sum_probs=198.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHH-HHHHHHH
Q 046719 558 NALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHP-LLSGCIR 636 (808)
Q Consensus 558 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~ 636 (808)
+.+...|.+.|.+.+|.+.|+..++. .|-+.||..|...|.+..++..|+.++.+-.+. .|-.+|+.. ....+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 56788899999999999999988875 567778888889999999999999999988874 466666543 3444555
Q ss_pred cC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 046719 637 EG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKEL 715 (808)
Q Consensus 637 ~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~ 715 (808)
.+ .++|.++|+...+.. +.++....++...|.-.++.+-|+..|+++++.|+. +...|+.++-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 66 899999999998864 556667777777888899999999999999999865 667889999999999999999999
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 716 VNDMKVKGLIPK--ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 716 ~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
|++++...-.|+ ..+|..++......||+.-|.+.|+-++..+.+ +.+.++.|+..-.+.|+.++|..+++.+....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999886544454 578999999999999999999999999988877 89999999999999999999999999999998
Q ss_pred CCCCc
Q 046719 794 KDAWT 798 (808)
Q Consensus 794 ~~~~~ 798 (808)
|+-.+
T Consensus 460 P~m~E 464 (478)
T KOG1129|consen 460 PDMAE 464 (478)
T ss_pred ccccc
Confidence 87544
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=8.8e-09 Score=99.08 Aligned_cols=272 Identities=12% Similarity=0.049 Sum_probs=132.2
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 046719 480 MKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNA 559 (808)
Q Consensus 480 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 559 (808)
++.|+.....+.+.+...|+.++|+..|++....++- +........-.+...|+.++...+...+.... .-....|..
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 3445555555555555555555555555555443111 11112222223344555555555554444321 112222222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-
Q 046719 560 LINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG- 638 (808)
Q Consensus 560 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~- 638 (808)
-+..+...++++.|+.+-++.++.. +.++..|..-...+...+++++|.--|+...... +-+..+|.-|+..|...|
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 2333344455555555555555432 1233344444444555555666555555555321 123455555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHcc-CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALI-HCYAEH-GDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKEL 715 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~-g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~ 715 (808)
..+|..+-+...+. ++.+..+...+. ..+... ---++|.+++++.+. +.|+.. ..+.++..|...|..++++.+
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 55555554444432 122222222221 122111 123556666666555 455544 455566666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 716 VNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 716 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+++.+. ..||......|++.+...+.+++|...|..++..+|+
T Consensus 461 Le~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 461 LEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 666555 4566666666666666666666666666666655544
No 69
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.44 E-value=3.7e-08 Score=105.21 Aligned_cols=184 Identities=11% Similarity=0.012 Sum_probs=119.9
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 046719 115 PSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDG 194 (808)
Q Consensus 115 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (808)
...|+..|-+..+... .=..+|..|...|...-+...|...|+.+.+.+.. |..++......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 4555555544444332 12446888888888777888888888888776555 777888888888888888888887333
Q ss_pred hhhCCCC-CChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 046719 195 MEKSRTR-PNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVS 273 (808)
Q Consensus 195 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 273 (808)
.-+..+. .-...|..+.-.|.+.++...|..-|+...+..+. |...|..+..+|.+.|++..|..+|.+.....+...
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 3222110 01122333344456778888888888888776544 677888888888888888888888887766432211
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 274 LVMFNSLLGGFCKAKRMEEAKSVCKEMEA 302 (808)
Q Consensus 274 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 302 (808)
-..|- ..-.-|..|.+.+|...+.....
T Consensus 631 y~~fk-~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 631 YGRFK-EAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHH-HHHHHHHhhhHHHHHHHHHHHHH
Confidence 11222 12234577888888888777654
No 70
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.40 E-value=1.3e-07 Score=97.42 Aligned_cols=482 Identities=18% Similarity=0.193 Sum_probs=232.8
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHH
Q 046719 218 KKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVC 297 (808)
Q Consensus 218 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 297 (808)
.++.+|+.+|-+-- + -...|.+|....+++++..+-+.. |.+.-...-.+.+.++...|+-+.|-++-
T Consensus 545 kkfk~ae~ifleqn------~---te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~elk 612 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQN------A---TEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAELK 612 (1636)
T ss_pred hhhhHHHHHHHhcc------c---HHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhhc
Confidence 45677777664321 1 123456677777778777765543 22222233345555666666666555431
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 046719 298 KEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVP 377 (808)
Q Consensus 298 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 377 (808)
+ .+..+ .+-|+.|.+.|.+-.|.+....-. ....|......+..++.+..-++.|-++|+++..
T Consensus 613 ----~----sdgd~-laaiqlyika~~p~~a~~~a~n~~--~l~~de~il~~ia~alik~elydkagdlfeki~d----- 676 (1636)
T KOG3616|consen 613 ----E----SDGDG-LAAIQLYIKAGKPAKAARAALNDE--ELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----- 676 (1636)
T ss_pred ----c----ccCcc-HHHHHHHHHcCCchHHHHhhcCHH--HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC-----
Confidence 1 12222 234667777777766655431100 0111333333344444444445555555554432
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 046719 378 DEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITF-NTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLI 456 (808)
Q Consensus 378 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 456 (808)
+.-.+..|-+-.-+.+|+++-+-. .+..+++. ......+...|+++.|...|-+.. .....+
T Consensus 677 ----~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kai 739 (1636)
T KOG3616|consen 677 ----FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAI 739 (1636)
T ss_pred ----HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHH
Confidence 111222222222333444333221 11122211 122233444555665555443321 111233
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHH
Q 046719 457 DGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIK 536 (808)
Q Consensus 457 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 536 (808)
.+-....+|.+|+.+++.++... .-...|..+.+.|...|+++.|.++|.+.- .++-.|.+|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 44455667777777777766542 233456666677777777777777775432 2344566777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 046719 537 DAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMK 616 (808)
Q Consensus 537 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 616 (808)
+|.++-.+.. |.......|..-..-+-+.|++.+|.+++-.+. .|+. .|..|-+.|..+..+++..+-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 7777765543 223334445555555666777777766654332 2332 3556667777777766665432
Q ss_pred HCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 046719 617 KLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMT 695 (808)
Q Consensus 617 ~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~ 695 (808)
.. --..|-..+..-+...| +..|++-|-+.-+ |.+-+++|-..+-|++|.++-+. .| ..|..-
T Consensus 878 ~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt---eg-g~n~~k 941 (1636)
T KOG3616|consen 878 GD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT---EG-GANAEK 941 (1636)
T ss_pred hh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc---cc-cccHHH
Confidence 11 11233444455566666 6666665554332 34455666666666666655432 11 112222
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQ 775 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 775 (808)
....+|+-.-.| +.|.+++++. | ....-++-.+..+-++-|..+-+-..+. .-..+...++..+-.
T Consensus 942 ~v~flwaksigg--daavkllnk~---g------ll~~~id~a~d~~afd~afdlari~~k~---k~~~vhlk~a~~led 1007 (1636)
T KOG3616|consen 942 HVAFLWAKSIGG--DAAVKLLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAAKD---KMGEVHLKLAMFLED 1007 (1636)
T ss_pred HHHHHHHHhhCc--HHHHHHHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhhhc---cCccchhHHhhhhhh
Confidence 222333322222 3333333331 1 0111122233444455554444433332 123344455555555
Q ss_pred cCChhHHHHHHHHHHHcCCCC
Q 046719 776 EGKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 776 ~g~~~~A~~~~~~~~~~~~~~ 796 (808)
.|++++|-+.+-++++.+.-+
T Consensus 1008 egk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 1008 EGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred ccchhhhhHhhHHHhhccccc
Confidence 666666655555555555433
No 71
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.40 E-value=1.2e-07 Score=101.41 Aligned_cols=283 Identities=10% Similarity=-0.067 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046719 467 KCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMV 546 (808)
Q Consensus 467 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 546 (808)
.|+..+.+..+. ...+..+|+.|.-. ...|++.-|..-|-+-.... +....+|..+.-.+.+..+++.|...|....
T Consensus 801 ~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 801 TAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 455555555443 13355566655443 44566666655555544432 2255567777777777777777777777766
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH--Hh--CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----
Q 046719 547 KREMGPTLVTFNALINGLCKKGRVMEAEDMLPQI--TS--SGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKL---- 618 (808)
Q Consensus 547 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 618 (808)
... +.|...|-.........|+.-+...+|..- .. .|--++..-|..-.......|+.++-+...+++...
T Consensus 878 SLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 878 SLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 542 224555555444455566666666666652 11 222334333333333344455555444333332211
Q ss_pred -----CCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHccCCHHHHHHHHHHHHHC
Q 046719 619 -----GIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQI-NLVPDLLVYN----ALIHCYAEHGDVQKALVLHSEMVDQ 687 (808)
Q Consensus 619 -----~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~ 687 (808)
+.+.+...|.+......+.+ +.++.++..+++.. ...-|...|+ ...+.++..|+++.|..-+......
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 23333455555555555555 55555554443320 0011222222 2233344445555444333322110
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 688 GIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKG-LIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 688 g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
.|..+...-+. ..-.++++++.+.|++++.-- -..+ ......++.+....+..+.|...+-+....
T Consensus 1037 ---vdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1037 ---VDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred ---HHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 11111111111 133455666666666654310 0111 122334444445555556665555555543
No 72
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=1.3e-07 Score=98.89 Aligned_cols=561 Identities=12% Similarity=0.114 Sum_probs=289.0
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCcCHhhHHHHHHHH
Q 046719 109 LSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMG---------FRPDKFTYGKAVQAA 179 (808)
Q Consensus 109 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~l~~~~ 179 (808)
|..-|+-+.|.+-...++ +..+|..|.+.+++..+++-|.-.+..|.... -.++ .+-..+.-..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 445566666655544443 34457777777777777777766665553210 0111 1111122223
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 046719 180 VKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVS 259 (808)
Q Consensus 180 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 259 (808)
...|-+++|+.+|++..+. ..|=..|-..|.+++|.++-+.--+. .=..||.....-+-..+|.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHH
Confidence 4566777777777776542 23334455667777777765432211 12235555555556667777777
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 046719 260 ALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRG 339 (808)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 339 (808)
+.|++... |--.++.. +. .+.....++.+.+ .|...|.-...-+-..|+.+.|+.+|+...+
T Consensus 879 eyyEK~~~----hafev~rm-L~-----e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 879 EYYEKAGV----HAFEVFRM-LK-----EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred HHHHhcCC----hHHHHHHH-HH-----hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 77766421 11111111 11 0111112222222 2445566566666678999999999887654
Q ss_pred CCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 046719 340 FRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNT 419 (808)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 419 (808)
|..+++..|-.|+.++|-++-++-. |....-.+.+.|-..|++.+|...|.+... +..
T Consensus 941 -------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsn 998 (1416)
T KOG3617|consen 941 -------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSN 998 (1416)
T ss_pred -------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHH
Confidence 4557778888899999988876643 445555688899999999999998877653 334
Q ss_pred HHHHHHhcCCH---------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH--------H
Q 046719 420 LIDKFCELGEM---------------DKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEM--------E 476 (808)
Q Consensus 420 li~~~~~~g~~---------------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m--------~ 476 (808)
.|+.|-.++.- -.|-+.|++. |. -...-+..|-+.|.+.+|+++--+- +
T Consensus 999 AIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lI 1070 (1416)
T KOG3617|consen 999 AIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLI 1070 (1416)
T ss_pred HHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHH
Confidence 44443332221 1222222221 11 1122334566777777776653221 1
Q ss_pred HC--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC
Q 046719 477 NS--GMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR-EMGPT 553 (808)
Q Consensus 477 ~~--~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~ 553 (808)
.. .-..|+...+.-.+.++...++++|..++-..++. ...+. +|...++.-..++-+.|... +-.|+
T Consensus 1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~ 1140 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGALQ-LCKNRNVRVTEEFAELMTPTKDDMPN 1140 (1416)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHH-HHhcCCCchhHHHHHhcCcCcCCCcc
Confidence 11 12335666666777777777777777776655431 22222 23333333333333333221 12233
Q ss_pred H----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH-------------HHHH
Q 046719 554 L----VTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELY-------------ENMK 616 (808)
Q Consensus 554 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~ 616 (808)
. .....+...|.+.|.+..|-+-|.+.-.+ ...+.++.+.|+.++..-+- +-+.
T Consensus 1141 e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQ 1211 (1416)
T KOG3617|consen 1141 EQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQ 1211 (1416)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhh
Confidence 2 33455566777788887777666554321 12234445555544321110 1111
Q ss_pred HCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 046719 617 KLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMT 695 (808)
Q Consensus 617 ~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~ 695 (808)
......++.+...++.-|.+.. ++.-..+|...... .+..|..+-. ..|-+++|-+.+.++..++. ....
T Consensus 1212 tlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydK---a~gAl~eA~kCl~ka~~k~~--~~t~ 1282 (1416)
T KOG3617|consen 1212 TLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDK---AMGALEEAAKCLLKAEQKNM--STTG 1282 (1416)
T ss_pred hcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhH---HhHHHHHHHHHHHHHHhhcc--hHHH
Confidence 1233445555555554444443 44433344333221 1111111111 12455666666666654321 1112
Q ss_pred HHHHHHHHHh-----------cCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 696 YNSLIFGHLR-----------EGKLSEVKELVNDMKVKGLIPK----ADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 696 ~~~l~~~~~~-----------~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
++.|-.-... ..+..+.+.-...+.+..+.|+ ...|..++..+....+|..|.+.++++....|.
T Consensus 1283 l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~ 1362 (1416)
T KOG3617|consen 1283 LDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPN 1362 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCc
Confidence 3322211111 1134444555555555443333 356778888888888899998888888877655
Q ss_pred CCHH
Q 046719 761 PSFC 764 (808)
Q Consensus 761 ~~~~ 764 (808)
-|..
T Consensus 1363 ~~~s 1366 (1416)
T KOG3617|consen 1363 VDLS 1366 (1416)
T ss_pred cchh
Confidence 4443
No 73
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.39 E-value=5e-07 Score=93.28 Aligned_cols=192 Identities=22% Similarity=0.289 Sum_probs=103.3
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 046719 177 QAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFE 256 (808)
Q Consensus 177 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 256 (808)
.+......+..|+.+++.+..... -..-|..+...|+..|+++.|+++|.+.- .++-.|.+|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 334445556666666665554321 22345556666666666666666665432 2344566666666666
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 046719 257 KVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELS 336 (808)
Q Consensus 257 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 336 (808)
.|..+-++. .|++.....|-.-..-.-+.|++.+|.++|-.+. .|+ .-|.+|-+.|..+..+++.++-.
T Consensus 809 da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhC
Confidence 666666554 2344444455555555556666666666653321 122 23456666666666666655432
Q ss_pred hCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 046719 337 GRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAI 402 (808)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 402 (808)
... -..|...+..-+-..|++..|+.-|-+.. -|.+-+.+|-..+-|++|.++-
T Consensus 878 ~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 878 GDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 211 12234445555666666666666554332 2555566666666666665543
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.38 E-value=2e-08 Score=105.88 Aligned_cols=291 Identities=17% Similarity=0.134 Sum_probs=145.8
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-----C
Q 046719 319 YSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRT-----G 393 (808)
Q Consensus 319 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g 393 (808)
+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.++. |..-|..+..+..-. .
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccccc
Confidence 34444444444444432222 1112223333444455555555555555555555432 333333333333111 1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 046719 394 DLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEM-DKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQIL 472 (808)
Q Consensus 394 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 472 (808)
+.+....+++++...- |.......+.-.+.....+ ..+...+..+..+|++ .+++.+-..|....+.+-..+++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 3445555555554432 2222211111111111111 2333444445555543 23444444444444443344444
Q ss_pred HHHHHC--------------CCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHH
Q 046719 473 EEMENS--------------GMKPNV--VSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIK 536 (808)
Q Consensus 473 ~~m~~~--------------~~~~~~--~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 536 (808)
...... .-+|.. +++..+...|...|++++|+++.++.++.. +..+..|..-.+.+-+.|+++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHH
Confidence 443221 012333 344555566667777777777777777652 223556666777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHcCCCHHHH
Q 046719 537 DAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVI------TY--NSLISGYSSLGSSQKC 608 (808)
Q Consensus 537 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~A 608 (808)
+|.+..+.....+.. |..+-+-.+..+.++|++++|.+++......+..|-.. .| .....+|.+.|++..|
T Consensus 246 ~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 246 EAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 777777777765433 55555666667777777777777777776654332211 12 3345577778888877
Q ss_pred HHHHHHHHHC
Q 046719 609 LELYENMKKL 618 (808)
Q Consensus 609 ~~~~~~~~~~ 618 (808)
+..|..+.+.
T Consensus 325 Lk~~~~v~k~ 334 (517)
T PF12569_consen 325 LKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHH
Confidence 7777666543
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=5.2e-08 Score=98.49 Aligned_cols=182 Identities=10% Similarity=0.041 Sum_probs=117.4
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHH--cC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 046719 603 GSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIR--EG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALV 679 (808)
Q Consensus 603 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 679 (808)
+..+.+.++..... +..|. ..+.+++..+.+ .. ...+.+++....+........+.-.++......|+++.|++
T Consensus 321 nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 NKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred hhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 44445555444332 22233 334444444332 23 66777777777665333334566677788889999999999
Q ss_pred HHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC---C--CCCC-HHHHHHHHHHHHccCChh
Q 046719 680 LHS--------EMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVK---G--LIPK-ADTYNILVKGYCNLKDFG 745 (808)
Q Consensus 680 ~~~--------~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g--~~p~-~~~~~~l~~~~~~~g~~~ 745 (808)
++. .+.+.+..|..+ ..+...+.+.++.+.|..++.++++. . ..+. ..++..++..-.+.|+-+
T Consensus 398 il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 999 666655555554 35666677777766666666665431 0 0111 234445555556779999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 746 GAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 746 ~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
+|...++++.+.++. |......++.+|.+. +.+.|..+-.++..
T Consensus 476 ea~s~leel~k~n~~-d~~~l~~lV~a~~~~-d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 476 EASSLLEELVKFNPN-DTDLLVQLVTAYARL-DPEKAESLSKKLPP 519 (652)
T ss_pred HHHHHHHHHHHhCCc-hHHHHHHHHHHHHhc-CHHHHHHHhhcCCC
Confidence 999999999997766 899999999999887 77888887766543
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=3.9e-10 Score=110.20 Aligned_cols=198 Identities=13% Similarity=0.113 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 590 ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCY 668 (808)
Q Consensus 590 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 668 (808)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...| +++|.+.+++.++.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555555431 222444444555555555 666666666665543 33455667777788
Q ss_pred HccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhH
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGG 746 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 746 (808)
...|++++|.+.++++.+....+ ....+..++.++...|++++|...++++.+. .| +...+..++..+...|++++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHH
Confidence 88888888888888887642222 3346677888888889999999999888773 34 45677788888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 747 AYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 747 A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
|..+++++.+..+ .+...+..++..+...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYN-QTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999998887743 36677777888888889999998888877654
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=5e-08 Score=94.03 Aligned_cols=291 Identities=12% Similarity=0.008 Sum_probs=205.5
Q ss_pred hcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHH
Q 046719 426 ELGEMDKAEEWVKRMLEK-GVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNV-VSYGSLINWLCKDCKLLEA 503 (808)
Q Consensus 426 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~A 503 (808)
-.++...|...+-.+... -++-|+.....+...+...|+.++|+..|++.... .|+. ...-.....+.+.|+.++.
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhH
Confidence 344545555544444333 23446667777777888888888888888776543 3322 2222333345567777777
Q ss_pred HHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046719 504 EIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSS 583 (808)
Q Consensus 504 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 583 (808)
..+...+.... .-....|-.-........+++.|+.+-++.++.+ +.+...+-.-...+...|+.++|.-.|+.....
T Consensus 286 ~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 286 SALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 77666665431 1123334444445566788888888888888753 234555555566788889999999888887763
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH-HHHHHcC--HHHHHHHHHHHHHCCCCCC-HH
Q 046719 584 GLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLL-SGCIREG--IVAVEKLFNEMLQINLVPD-LL 659 (808)
Q Consensus 584 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~~--~~~a~~~~~~~~~~~~~~~-~~ 659 (808)
. +-+...|..|+.+|...|++.+|.-+-+...+. ++.+..++..+. ..|.... -++|.+++++.++. .|+ ..
T Consensus 364 a-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~ 439 (564)
T KOG1174|consen 364 A-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTP 439 (564)
T ss_pred c-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHH
Confidence 2 236688999999999999999998887777653 455666666553 3344433 78999999998884 455 45
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA 728 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 728 (808)
..+.+...+...|..++++.++++.+. ..||....+.|+..+...+.+.+|.+.|..++. +.|+.
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 667788899999999999999999998 688999999999999999999999999999988 66753
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=8.7e-08 Score=96.93 Aligned_cols=462 Identities=12% Similarity=0.087 Sum_probs=245.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHH--HHHHH
Q 046719 137 INVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNV--LISGF 214 (808)
Q Consensus 137 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~ 214 (808)
+-+=++.+...|.+++|.....+++..++. |...+.-=+-++.+.+++++|+.+.+.-... .+++. +=.+|
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~~------~~~~~~~fEKAY 87 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGAL------LVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh------hhcchhhHHHHH
Confidence 344456677778888888888888877644 5555555566677888888888554433211 11111 23334
Q ss_pred H--ccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHccCChh
Q 046719 215 C--KEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEV-SLVMFNSLLGGFCKAKRME 291 (808)
Q Consensus 215 ~--~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 291 (808)
| +.++.++|+..++..-+. |..+...-...+.+.|++++|..+|+.+.+.+.+- +...-..++.+-.
T Consensus 88 c~Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a------ 157 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA------ 157 (652)
T ss_pred HHHHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH------
Confidence 3 778888888887722211 33355555667778888888888888886654321 1122222222111
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHH---HHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHH
Q 046719 292 EAKSVCKEMEAHGFDPDGFTYSM---LFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVG 368 (808)
Q Consensus 292 ~A~~~~~~m~~~g~~~~~~~~~~---ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 368 (808)
+.. -+.+......| ..+|.. ....+...|++.+|+++++...+.+.. .++ .++.. .+-+
T Consensus 158 -~l~-~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-----------~l~-~~d~~--eEei- 219 (652)
T KOG2376|consen 158 -ALQ-VQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICRE-----------KLE-DEDTN--EEEI- 219 (652)
T ss_pred -hhh-HHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------hhc-ccccc--hhhH-
Confidence 011 11122222222 223332 234455667777777777765332100 000 00000 0000
Q ss_pred HHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHH-HHHHHH-----
Q 046719 369 KEIENGLVPDE-VMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCIT----FNTLIDKFCELGEMD-KAEEWV----- 437 (808)
Q Consensus 369 ~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~-~A~~~~----- 437 (808)
.-+. .+-..+.-.+...|+.++|..++...+..... |... -|.|+..-....-++ .++..+
T Consensus 220 -------e~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~ 291 (652)
T KOG2376|consen 220 -------EEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVF 291 (652)
T ss_pred -------HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHH
Confidence 0000 12223444556677777777777777776543 3322 222322211111111 111111
Q ss_pred -------HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH-HhcCCHHHHHHHHHH
Q 046719 438 -------KRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWL-CKDCKLLEAEIVLKD 509 (808)
Q Consensus 438 -------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~~A~~~~~~ 509 (808)
..+... -......-+.++..|. +..+.+.++...... ..|....-+.+..+. ++.....++.+++..
T Consensus 292 ~l~~~~l~~Ls~~-qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~--~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~ 366 (652)
T KOG2376|consen 292 KLAEFLLSKLSKK-QKQAIYRNNALLALFT--NKMDQVRELSASLPG--MSPESLFPILLQEATKVREKKHKKAIELLLQ 366 (652)
T ss_pred HhHHHHHHHHHHH-HHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCc--cCchHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 111111 0001111223333332 334455554444322 233333333333332 233357778888877
Q ss_pred HHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046719 510 MENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFD--------EMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQIT 581 (808)
Q Consensus 510 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 581 (808)
.-+....-...+.-.++......|+++.|++++. .+.+.+. .+.+...+...+.+.++.+.|..++.+.+
T Consensus 367 ~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai 444 (652)
T KOG2376|consen 367 FADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAI 444 (652)
T ss_pred HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 7766444345566777788888999999999988 4444333 44556677777888888777888887765
Q ss_pred hC--CCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHH
Q 046719 582 SS--GLNPDV----ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEM 649 (808)
Q Consensus 582 ~~--~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~ 649 (808)
.. ...+.. .++..++..-.+.|+.++|..+++++.+.+ ++|..+...++.+|++...+.|..+-.++
T Consensus 445 ~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d~eka~~l~k~L 517 (652)
T KOG2376|consen 445 KWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLDPEKAESLSKKL 517 (652)
T ss_pred HHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcCHHHHHHHhhcC
Confidence 41 011111 233344444566788999999999988753 67788888888888888877777666553
No 79
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=1.2e-09 Score=119.83 Aligned_cols=269 Identities=14% Similarity=0.041 Sum_probs=193.4
Q ss_pred CCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH---------hcCChHHHHHHHHHhh
Q 046719 131 RLSLDSINVLLECLV-----RCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAV---------KIGDLKRACEIFDGME 196 (808)
Q Consensus 131 ~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~ 196 (808)
+.+..+|...+++.. ..+.+++|..+|+++++..+. +...|..+..++. ..+++++|...+++++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 455665665555532 125689999999999987665 5666766665544 2345889999999999
Q ss_pred hCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHH
Q 046719 197 KSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVM 276 (808)
Q Consensus 197 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 276 (808)
+.++. +...+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...+++..+..+... ..
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~-~~ 408 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA-AA 408 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-hh
Confidence 87543 7778888888999999999999999999987533 567788899999999999999999999998755432 23
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHh
Q 046719 277 FNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCK 356 (808)
Q Consensus 277 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 356 (808)
+..++..+...|++++|+..++++.+...+-+...+..+..++...|+.++|...++++.... +.+....+.+...|+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 333444566789999999999998765322245567778888999999999999999876552 2234455566667777
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 046719 357 EGKVEIAEEIVGKEIENG-LVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHG 409 (808)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 409 (808)
.| +.|...++.+.+.. -.+....+ +-..|.-.|+-+.+..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 47777777766532 11222223 44455566777777666 7777653
No 80
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=1.9e-09 Score=118.16 Aligned_cols=266 Identities=14% Similarity=0.059 Sum_probs=191.3
Q ss_pred CHhhHHHHHHHHHh-----cCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHH---------ccCCHhHHHHHHHHHHhC
Q 046719 168 DKFTYGKAVQAAVK-----IGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFC---------KEKKIRDAEKLFDEMCQR 233 (808)
Q Consensus 168 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~m~~~ 233 (808)
+...|...+++... .+++++|..+|++.++..+. +...|..+..++. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 55555555554321 23468999999999986432 4556666655544 234589999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHH
Q 046719 234 KLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYS 313 (808)
Q Consensus 234 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 313 (808)
.+. +..++..+...+...|++++|...|++..+.++ .+...+..+...+...|++++|...+++..+.... +...+.
T Consensus 334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 544 778888898999999999999999999998753 35667888889999999999999999999987432 223334
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 046719 314 MLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTG 393 (808)
Q Consensus 314 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 393 (808)
.++..+...|++++|...++++.....+.+...+..+...+...|+.++|...+.++...... +....+.+...|+..|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH
Confidence 455567778999999999999887654445556777888899999999999999987665322 4455667777788888
Q ss_pred CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 046719 394 DLNRAMLAIQQMENHG-LAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEK 443 (808)
Q Consensus 394 ~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 443 (808)
++|...++.+.+.. ..+....+ +-..+.-.|+-+.+..+ +++.+.
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 47777777766531 11222222 33445556777777766 777765
No 81
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=4.1e-07 Score=95.19 Aligned_cols=545 Identities=14% Similarity=0.140 Sum_probs=285.4
Q ss_pred CHhhHHHHHHH--HHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCC---------CC
Q 046719 168 DKFTYGKAVQA--AVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRK---------LV 236 (808)
Q Consensus 168 ~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---------~~ 236 (808)
|..|...++.. |+.-|+.+.|.+-.+-+. +..+|..+.+.|.+..+++-|.-.+..|.... -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 44555555543 556777777776666553 33567777777777777777666655553210 11
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 046719 237 PTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLF 316 (808)
Q Consensus 237 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 316 (808)
|+ .+-..+.......|..++|..+|++.++ |..|=+.|-..|.+++|.++-+.=-.. . =..||..-.
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHH
Confidence 22 2222333344578899999999998755 445566777889999999887543222 1 234566666
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 046719 317 DGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLN 396 (808)
Q Consensus 317 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 396 (808)
.-+-..+|.+.|++.|++.... .++ +.+++. .+....+...+++ .|...|.-....+-..|+.+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~h-------afe-v~rmL~--e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~Gemd 929 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVH-------AFE-VFRMLK--EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMD 929 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCCh-------HHH-HHHHHH--hChHHHHHHHHhc------cchHHHHHHHHHHhcccchH
Confidence 6667788899999888864322 111 111111 1112222222222 24556666666666788889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046719 397 RAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEME 476 (808)
Q Consensus 397 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 476 (808)
.|+.+|....+ |-++++..|-.|+.++|-++-++-- |....-.+...|-..|++.+|...|.+..
T Consensus 930 aAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 930 AALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88888887764 4566777788888888887766432 66666778888888888888888887764
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHH----------------HHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHH
Q 046719 477 NSGMKPNVVSYGSLINWLCKDCKLL----------------EAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFK 540 (808)
Q Consensus 477 ~~~~~~~~~~~~~ll~~~~~~~~~~----------------~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 540 (808)
. +..-|+ +|+.++++ .|..+|++.- . -....+..|-+.|.+.+|++
T Consensus 995 a---------fsnAIR-lcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALe 1056 (1416)
T KOG3617|consen 995 A---------FSNAIR-LCKENDMKDRLANLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALE 1056 (1416)
T ss_pred H---------HHHHHH-HHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHH
Confidence 3 122222 22222222 2333333321 0 11223445666777766665
Q ss_pred HHHH--------HHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 046719 541 FFDE--------MVKRE--MGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLE 610 (808)
Q Consensus 541 ~~~~--------~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 610 (808)
+--+ ++..+ ...|+...+.-.+.++...++++|..++-...+ |...+.. |+.....-..+
T Consensus 1057 lAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alql-C~~~nv~vtee 1126 (1416)
T KOG3617|consen 1057 LAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQL-CKNRNVRVTEE 1126 (1416)
T ss_pred HHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHH-HhcCCCchhHH
Confidence 4221 11222 233566666666777777777777777665543 1111222 22222222222
Q ss_pred HHHHHHHC-CCCcCH----HhHHHHHHHHHHcC-HHHHHHHHHHH----------HHCCCCC----------CHHHHHHH
Q 046719 611 LYENMKKL-GIKPSL----RTYHPLLSGCIREG-IVAVEKLFNEM----------LQINLVP----------DLLVYNAL 664 (808)
Q Consensus 611 ~~~~~~~~-~~~p~~----~~~~~l~~~~~~~~-~~~a~~~~~~~----------~~~~~~~----------~~~~~~~l 664 (808)
+-+.|.-. .-.|+. ..+..+...|.+.| +..|.+-|.+. ++.|-.. ...+| .+
T Consensus 1127 ~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiY-Im 1205 (1416)
T KOG3617|consen 1127 FAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIY-IM 1205 (1416)
T ss_pred HHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceee-ee
Confidence 22222211 012222 23334445566666 66555544332 1111100 00011 11
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------------hcCCHhHHHHHHHHHHHCCCCCCHH
Q 046719 665 IHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHL---------------REGKLSEVKELVNDMKVKGLIPKAD 729 (808)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~---------------~~g~~~~A~~~~~~~~~~g~~p~~~ 729 (808)
..-|.+.-+|..--++.+.+.. +-.....+..|+..|. ..|-.++|...+.++..+.. ...
T Consensus 1206 AANyLQtlDWq~~pq~mK~I~t--FYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~~--~~t 1281 (1416)
T KOG3617|consen 1206 AANYLQTLDWQDNPQTMKDIET--FYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKNM--STT 1281 (1416)
T ss_pred hhhhhhhcccccChHHHhhhHh--hhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhcc--hHH
Confidence 1112222222222222222211 0000111222222221 23345556666665554321 111
Q ss_pred HHHHH----------HHHHH-ccCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 046719 730 TYNIL----------VKGYC-NLKDFGGAYIWYREMFENGFIP----SFCIYNELTNGLKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 730 ~~~~l----------~~~~~-~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
.++.| +.... -..|..+.++-...+++....| ....+..|++.+....+|++|.+.++++.++-|
T Consensus 1282 ~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p 1361 (1416)
T KOG3617|consen 1282 GLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVP 1361 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCC
Confidence 12222 11111 1235666666677777654333 346778889999999999999999999998776
Q ss_pred C
Q 046719 795 D 795 (808)
Q Consensus 795 ~ 795 (808)
.
T Consensus 1362 ~ 1362 (1416)
T KOG3617|consen 1362 N 1362 (1416)
T ss_pred c
Confidence 5
No 82
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=1.8e-09 Score=105.55 Aligned_cols=199 Identities=14% Similarity=0.084 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHH
Q 046719 134 LDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISG 213 (808)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 213 (808)
...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...|++..+..+ .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 455666777777777777777777777665433 456666677777777777777777777776543 244566666777
Q ss_pred HHccCCHhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhH
Q 046719 214 FCKEKKIRDAEKLFDEMCQRKLV-PTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEE 292 (808)
Q Consensus 214 ~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 292 (808)
+...|++++|.+.|++....... .....+..+...+.+.|++++|...+++...... .+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777653211 1234555566666777777777777777665432 234455566666666777777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 046719 293 AKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELS 336 (808)
Q Consensus 293 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 336 (808)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777666654 22234444455555556666666665555443
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=1.8e-09 Score=112.09 Aligned_cols=243 Identities=19% Similarity=0.200 Sum_probs=166.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHh-----CCC-C
Q 046719 520 QIYNMLIDGSCTMGRIKDAFKFFDEMVKR-----EM-GPTLV-TFNALINGLCKKGRVMEAEDMLPQITS-----SGL-N 586 (808)
Q Consensus 520 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~ 586 (808)
.+...+...|...|+++.|..+++..++. |. .|... ..+.+...|...+++++|..+|+++.. .|- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566778888888888888888877653 11 12222 233466677788888888888887764 121 1
Q ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 046719 587 PD-VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDL-LVYNAL 664 (808)
Q Consensus 587 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l 664 (808)
|. ..+++.|...|.+.|++++|...++...+ ++++.... ..|+. ..++.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~---------------------------I~~~~~~~-~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALE---------------------------IYEKLLGA-SHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHH---------------------------HHHHhhcc-ChHHHHHHHHHH
Confidence 22 24566777778888888888777776553 22221111 12232 345667
Q ss_pred HHHHHccCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CC--CC-CHHH
Q 046719 665 IHCYAEHGDVQKALVLHSEMVDQ---GIRPDK----MTYNSLIFGHLREGKLSEVKELVNDMKVK----GL--IP-KADT 730 (808)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~~~~~---g~~pd~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~--~p-~~~~ 730 (808)
+..|...+++++|..++++..+. -..++. -+++.|++.|...|++++|.+++++++.. +- .+ ....
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 77788889999999988877642 122222 27889999999999999999999998642 11 22 1345
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHH----CCCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMFE----NGFI-PS-FCIYNELTNGLKQEGKLKEAQILCSEIS 790 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 790 (808)
++.++..|.+.+++++|.++|.+... .|+. |+ ..+|..|+-.|.+.|++++|.++.+.+.
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 67888899999999999888888653 3442 22 4678899999999999999999999887
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.28 E-value=2e-07 Score=98.36 Aligned_cols=126 Identities=13% Similarity=0.061 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 046719 383 NTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRM 462 (808)
Q Consensus 383 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (808)
.-+...|-..|++++|++.+++.++..+. .+..|..-...+-..|++.+|.+.++........ |...-+-.+..+.+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHC
Confidence 44455566666666666666666665322 3455666666666666666666666666655433 555555555666666
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--------hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046719 463 GHFDKCFQILEEMENSGMKPNV--------VSYGSLINWLCKDCKLLEAEIVLKDM 510 (808)
Q Consensus 463 g~~~~a~~~~~~m~~~~~~~~~--------~~~~~ll~~~~~~~~~~~A~~~~~~m 510 (808)
|++++|.+++......+..|-. +.......+|.+.|++..|++.|...
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666666666666544332211 11223344555666666555554444
No 85
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=8.1e-10 Score=102.69 Aligned_cols=230 Identities=13% Similarity=0.016 Sum_probs=144.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhc
Q 046719 103 NILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKI 182 (808)
Q Consensus 103 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (808)
+-+.++|.+.|.+.+|.+.|...+.. .+-+++|..|.+.|.+-.++..|+.+|.+-++.-+. |+.....+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHHHHH
Confidence 34666677777777777777666553 344556667777777777777777777766654222 444444456666667
Q ss_pred CChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 046719 183 GDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALR 262 (808)
Q Consensus 183 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 262 (808)
++.++|.++|+.+.+.. .-++....++...|.-.++.+-|+..++++.+.|.. ++..|+.+.-+|.-.+.+|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 77777777777776653 235555556666666667777777777777777665 6666766666666667777777777
Q ss_pred HHHHhCCCCcC--HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 046719 263 ERMKRDKVEVS--LVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGR 338 (808)
Q Consensus 263 ~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 338 (808)
++....-..|+ ..+|-.+-...+..|++..|.+.|+-....+. .+...++.|.-.-.+.|++++|..++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 66655433232 23555566666666777777777766665432 24556666666666666666666666655544
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=8.1e-09 Score=107.25 Aligned_cols=241 Identities=19% Similarity=0.194 Sum_probs=158.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCcchhH-HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC--CCC
Q 046719 488 GSLINWLCKDCKLLEAEIVLKDMENR-----G-VLPNAQI-YNMLIDGSCTMGRIKDAFKFFDEMVKR-----EM--GPT 553 (808)
Q Consensus 488 ~~ll~~~~~~~~~~~A~~~~~~m~~~-----~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~ 553 (808)
..+...|...|++++|..+++...+. | ..|...+ .+.+...|...+++++|..+|++++.- |- +.-
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 33444555555555555555544332 1 1223332 334677888889999999998888752 21 112
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHh
Q 046719 554 LVTFNALINGLCKKGRVMEAEDMLPQITSS-----GL-NPDV-ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRT 626 (808)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 626 (808)
..+++.|...|.+.|++++|...++...+- |. .|.+ ..++.++..+...+++++|..+++...+
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~--------- 353 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK--------- 353 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH---------
Confidence 456777778899999999998888776541 11 1222 2345555566667777777777765443
Q ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC------CCCCC-HHHHHHH
Q 046719 627 YHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQ------GIRPD-KMTYNSL 699 (808)
Q Consensus 627 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~pd-~~~~~~l 699 (808)
++........+.-..+++.|...|...|++++|.+++++++.. +..+. ...++.|
T Consensus 354 ------------------i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 354 ------------------IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred ------------------HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 1111111111112468899999999999999999999998863 11222 3468899
Q ss_pred HHHHHhcCCHhHHHHHHHHHH----HCCC-CCC-HHHHHHHHHHHHccCChhHHHHHHHHHH
Q 046719 700 IFGHLREGKLSEVKELVNDMK----VKGL-IPK-ADTYNILVKGYCNLKDFGGAYIWYREMF 755 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~----~~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 755 (808)
+..|.+.+++.+|.++|.+.. ..|. .|+ ..+|..|+..|..+|++++|.++.+.+.
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999999999999888854 2222 223 4668899999999999999999988876
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.24 E-value=4.4e-09 Score=105.18 Aligned_cols=240 Identities=14% Similarity=0.052 Sum_probs=152.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 046719 529 SCTMGRIKDAFKFFDEMVKRE-MGPT--LVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSS 605 (808)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 605 (808)
....+..+.++.-+.+++... ..|+ ...|..+...|...|+.++|...|++.++.. +.+...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 334567788888888888642 1222 4557777778888889999988888888753 23567888888888888999
Q ss_pred HHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 046719 606 QKCLELYENMKKLGIKPS-LRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSE 683 (808)
Q Consensus 606 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 683 (808)
++|...|++..+. .|+ ..++..+...+...| +++|.+.|++.++.+ |+..........+...++.++|+..+++
T Consensus 115 ~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 115 DAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999888888864 344 556666666777777 888888888887753 3322111222233456778888888876
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC---C--CCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 684 MVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVK---G--LIP-KADTYNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 684 ~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
.... ..|+...+ .......|+..++ +.++.+.+. . +.| ....|..++..+.+.|++++|+.+|+++++.
T Consensus 191 ~~~~-~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEK-LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhh-CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6543 23333221 2333334555443 244444321 1 111 2356778888888888888888888888877
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 046719 758 GFIPSFCIYNELTNGLKQEGK 778 (808)
Q Consensus 758 ~~~~~~~~~~~l~~~l~~~g~ 778 (808)
++....++...+++.....++
T Consensus 266 ~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 266 NVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred CCchHHHHHHHHHHHHHHHhh
Confidence 654345555555555444333
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.7e-07 Score=94.07 Aligned_cols=236 Identities=13% Similarity=0.117 Sum_probs=165.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-------HH
Q 046719 522 YNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITY-------NS 594 (808)
Q Consensus 522 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~ 594 (808)
...+.++..+..+++.|++-++..++.. -+..-++....+|...|.+.+.....+..++.|-. ...-| ..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 5667777888888999999998888764 35556677777888888888888887777765532 11222 22
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC
Q 046719 595 LISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDL-LVYNALIHCYAEHG 672 (808)
Q Consensus 595 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 672 (808)
+..+|.+.++++.++..|.+....-..|+..+ +.. .+++.+..+...- +.|+. .---.-.+.+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhcc
Confidence 44466778889999999998765433333211 112 3334433333322 23332 11122256778899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHH
Q 046719 673 DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWY 751 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 751 (808)
++..|+..|.++++.. +-|...|...+.+|.+.|.+..|+.=.+..++ +.|+ ...|.--+.++..+.+|++|.+.|
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999963 44666899999999999999999999999988 4565 566777788888899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh
Q 046719 752 REMFENGFIPSFCIYNELTNGLKQ 775 (808)
Q Consensus 752 ~~~~~~~~~~~~~~~~~l~~~l~~ 775 (808)
++.++.++. +......+.+++..
T Consensus 450 ~eale~dp~-~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 450 QEALELDPS-NAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHhcCch-hHHHHHHHHHHHHH
Confidence 999998765 55655555555544
No 89
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=3.2e-11 Score=83.39 Aligned_cols=49 Identities=51% Similarity=0.955 Sum_probs=23.6
Q ss_pred CChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046719 202 PNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYC 250 (808)
Q Consensus 202 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 250 (808)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 90
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=4.9e-11 Score=82.44 Aligned_cols=50 Identities=44% Similarity=0.850 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 046719 237 PTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCK 286 (808)
Q Consensus 237 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 286 (808)
||.++||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777777777777777777777777777777777777777777777653
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.19 E-value=1.6e-08 Score=90.14 Aligned_cols=202 Identities=13% Similarity=0.037 Sum_probs=135.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 046719 592 YNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAE 670 (808)
Q Consensus 592 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 670 (808)
...|.-.|...|+...|..-+++.++.. +.+..++..+...|.+.| .+.|.+.|++.++.. +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3344445555555555555555555532 223445555555555555 556666666655542 3445677778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHH
Q 046719 671 HGDVQKALVLHSEMVDQGIRPDK-MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAY 748 (808)
Q Consensus 671 ~g~~~~A~~~~~~~~~~g~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 748 (808)
.|++++|...|+++.+...-|.. .+|..++.+..+.|+.+.|..++++.++ ..| .+.+...+.....+.|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHH
Confidence 88888888888888874322322 3777888888888888888888888887 445 3566677788888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 749 IWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.++++....+. ++...+-..++.-...|+...|-++=..+...-|....
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 88888777665 57777777777777888877777776666655555443
No 92
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.19 E-value=1.9e-08 Score=100.72 Aligned_cols=93 Identities=15% Similarity=0.010 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 046719 592 YNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAE 670 (808)
Q Consensus 592 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 670 (808)
|..+...|...|+.++|...|++..+.. +.+...|+.+...+...| +++|.+.|++.++.. +.+...|..++.++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4444444455555555555555554421 222444444444445555 555555555554432 1123344444444445
Q ss_pred cCCHHHHHHHHHHHHH
Q 046719 671 HGDVQKALVLHSEMVD 686 (808)
Q Consensus 671 ~g~~~~A~~~~~~~~~ 686 (808)
.|++++|++.+++..+
T Consensus 145 ~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555544
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=9.9e-08 Score=95.73 Aligned_cols=226 Identities=16% Similarity=0.141 Sum_probs=167.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH----
Q 046719 557 FNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLS---- 632 (808)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~---- 632 (808)
...+.++..+..++..|++-+....+.. -+..-++....+|...|.+.++........+.|- ....-|+.+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 4566777778888899999888888753 3555566777788899999888888887776542 22222333333
Q ss_pred ---HHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC
Q 046719 633 ---GCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREG 707 (808)
Q Consensus 633 ---~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g 707 (808)
++.+.+ ++.+...|.+.+.....|+ ...+....+++++..+...- +.|+.. --..-+..+++.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhcc
Confidence 344445 6677777777655433332 22334456666666666554 445443 2334588899999
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 046719 708 KLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCS 787 (808)
Q Consensus 708 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~ 787 (808)
++..|+..+.++++.. +.|...|...+-+|.+.|.+.+|++-.+..++.++. ....|.+=+.++....+|++|...|.
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999864 346888999999999999999999999999999766 78889888999999999999999999
Q ss_pred HHHHcCCCCCc
Q 046719 788 EISIVGKDAWT 798 (808)
Q Consensus 788 ~~~~~~~~~~~ 798 (808)
+.++.+|++-.
T Consensus 451 eale~dp~~~e 461 (539)
T KOG0548|consen 451 EALELDPSNAE 461 (539)
T ss_pred HHHhcCchhHH
Confidence 99999877654
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.17 E-value=1.3e-06 Score=82.38 Aligned_cols=247 Identities=12% Similarity=0.133 Sum_probs=121.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 046719 529 SCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKC 608 (808)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 608 (808)
+...|+...|+.....+++- .+.+...+..-..+|...|++..|+.-+....+.. ..+..+.-.+-..+...|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHH
Confidence 34455556666666555553 23345555555556666666666655555444321 22334444444455555666666
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 046719 609 LELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQG 688 (808)
Q Consensus 609 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 688 (808)
+...++..+ +.||..........+.+ ..+.++. +....+.++|.++++..+...+.
T Consensus 243 L~~iRECLK--ldpdHK~Cf~~YKklkK-----v~K~les----------------~e~~ie~~~~t~cle~ge~vlk~- 298 (504)
T KOG0624|consen 243 LKEIRECLK--LDPDHKLCFPFYKKLKK-----VVKSLES----------------AEQAIEEKHWTECLEAGEKVLKN- 298 (504)
T ss_pred HHHHHHHHc--cCcchhhHHHHHHHHHH-----HHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhc-
Confidence 655555554 24544332221111110 0000000 11123345555555555555553
Q ss_pred CCCCH--H---HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC
Q 046719 689 IRPDK--M---TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPS 762 (808)
Q Consensus 689 ~~pd~--~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 762 (808)
.|.. + .+..+-.++...|++.+|++...+.++ +.|+ ..++.--+.+|.-...+++|+.-|+++.+.+.. +
T Consensus 299 -ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s-n 374 (504)
T KOG0624|consen 299 -EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES-N 374 (504)
T ss_pred -CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc-c
Confidence 2321 1 222344455555666666666666655 4443 555555566666666666666666666655443 3
Q ss_pred HHHHHHHH-----------------HHHHhcCChhHHHHHHHHHHHc-CCCCCchhh-hHhh
Q 046719 763 FCIYNELT-----------------NGLKQEGKLKEAQILCSEISIV-GKDAWTNED-QSAV 805 (808)
Q Consensus 763 ~~~~~~l~-----------------~~l~~~g~~~~A~~~~~~~~~~-~~~~~~~~~-~~~~ 805 (808)
..+-..+- -+-.+.-...|..+.|+++-++ .|+|+.++. .+-.
T Consensus 375 ~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkA 436 (504)
T KOG0624|consen 375 TRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKA 436 (504)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHH
Confidence 22222111 1122334556778888877665 588888554 4433
No 95
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.16 E-value=6e-09 Score=92.76 Aligned_cols=164 Identities=15% Similarity=0.078 Sum_probs=143.9
Q ss_pred HHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 046719 627 YHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHL 704 (808)
Q Consensus 627 ~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~ 704 (808)
...|.-+|...| ...|.+-+++.++.+ +.+..+|..+...|.+.|..+.|.+.|+++++ +.|+ ..+.|..++.+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHH
Confidence 444566788889 999999999999975 45568899999999999999999999999998 5664 458999999999
Q ss_pred hcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 046719 705 REGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQ 783 (808)
Q Consensus 705 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~ 783 (808)
..|++++|...|+++.....-+ -..+|..++.|..++|+++.|.++|++.++.++. .+.....++....+.|++-+|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 9999999999999998743333 2678999999999999999999999999999887 6777889999999999999999
Q ss_pred HHHHHHHHcCC
Q 046719 784 ILCSEISIVGK 794 (808)
Q Consensus 784 ~~~~~~~~~~~ 794 (808)
-++++....++
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99999987766
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=6.6e-07 Score=82.63 Aligned_cols=351 Identities=14% Similarity=0.062 Sum_probs=211.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHH-HHHHHH
Q 046719 137 INVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNV-LISGFC 215 (808)
Q Consensus 137 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 215 (808)
+.+++..+.+..++++|++++..-.+..++ +....+.+..+|....++..|...|+++-... |...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 567777778888899999888877776554 67777888888888889999999999887643 33333322 234455
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHH
Q 046719 216 KEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVD--GYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEA 293 (808)
Q Consensus 216 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 293 (808)
+.+.+.+|+.+...|... |+...-..-+. .....+++-.+..++++... +.+..+.+.......+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHH
Confidence 778888898888877643 22222222222 23356788888888887632 23444555555556688899999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcH----HHHHHHHHhcCChHHHHHHHHH
Q 046719 294 KSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTC----SILLNALCKEGKVEIAEEIVGK 369 (808)
Q Consensus 294 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~ 369 (808)
.+-|+...+.+--.....|+.- -+..+.|+++.|++...+++++|++..+..- ...+++- .-|+ ...+...
T Consensus 164 vqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgN---t~~lh~S 238 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGN---TLVLHQS 238 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccc---hHHHHHH
Confidence 9988888775443345556543 3455678888888888888888764322110 0000000 0000 0000000
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 046719 370 EIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENH-GLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPN 448 (808)
Q Consensus 370 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 448 (808)
. -+..+|.-...+.+.|+++.|.+.+-.|.-+ ....|++|...+.-.-. .+++....+-+.-+....+ -.
T Consensus 239 a-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP 309 (459)
T KOG4340|consen 239 A-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FP 309 (459)
T ss_pred H-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CC
Confidence 0 1123455555677889999999888887532 23447777665543322 3455555555566665543 34
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 046719 449 VKTNNTLIDGYGRMGHFDKCFQILEEMENSGMK-PNVVSYGSLINWLC-KDCKLLEAEIVLKDME 511 (808)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~-~~~~~~~A~~~~~~m~ 511 (808)
..|+..++-.||+..-++-|-+++.+-...-.. .+...|+ +++++. .....++|.+-++.+.
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 568888888999999999998888763221111 1222333 333333 3445666666555443
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.04 E-value=1.6e-06 Score=81.83 Aligned_cols=194 Identities=13% Similarity=0.127 Sum_probs=133.7
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 046719 598 GYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQK 676 (808)
Q Consensus 598 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 676 (808)
.+...|+...|++....+++. .+.|...+..-..+|...| ...|..-++...+.. ..+...+..+...+..-|+.+.
T Consensus 164 s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHH
Confidence 344566777777777777663 2345555555556666666 666666555555432 2233444555666677777777
Q ss_pred HHHHHHHHHHCCCCCCHHH----HHHH---------HHHHHhcCCHhHHHHHHHHHHHCCCCCC--H---HHHHHHHHHH
Q 046719 677 ALVLHSEMVDQGIRPDKMT----YNSL---------IFGHLREGKLSEVKELVNDMKVKGLIPK--A---DTYNILVKGY 738 (808)
Q Consensus 677 A~~~~~~~~~~g~~pd~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~---~~~~~l~~~~ 738 (808)
++...++.++ +.||... |..| +......++|.++++..++.++. .|. . ..+..+..++
T Consensus 242 sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 242 SLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecc
Confidence 7777777776 5666431 2111 12344677888888888888774 443 2 2344666777
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 739 CNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 739 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
...|++.+|+....++++..++ |..++.--+++|.-...+++|+.-|+++.+.++++-.
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 8899999999999999987665 7999999999999999999999999999998887655
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.03 E-value=1.3e-06 Score=91.39 Aligned_cols=195 Identities=13% Similarity=0.017 Sum_probs=108.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHh
Q 046719 104 ILLSILSSAKLPSEALQLYASTKADGT-RLSL-DSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVK 181 (808)
Q Consensus 104 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (808)
.+...+...|+++++...+....+... ..+. .........+...|++++|...++++++..+. |...+.. ...+..
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~~~~~ 88 (355)
T cd05804 11 AAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HLGAFG 88 (355)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hHHHHH
Confidence 344445555666666555555443222 1222 22333444566677888888888877776444 3434432 112222
Q ss_pred ----cCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 046719 182 ----IGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEK 257 (808)
Q Consensus 182 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 257 (808)
.|..+.+.+.+..... ....+......+...+...|++++|...+++..+..+. +...+..+...|...|++++
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 89 LGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred hcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHH
Confidence 3444444444443111 11122333445556667777788888887777776432 45566777777777777777
Q ss_pred HHHHHHHHHhCCCC-cCH--HHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 258 VSALRERMKRDKVE-VSL--VMFNSLLGGFCKAKRMEEAKSVCKEMEA 302 (808)
Q Consensus 258 a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 302 (808)
|...+++....... ++. ..|..+...+...|++++|..++++...
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77777776654321 222 2344566667777777777777777643
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.01 E-value=1.9e-06 Score=89.97 Aligned_cols=200 Identities=12% Similarity=0.026 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cCHh-hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHH
Q 046719 134 LDSINVLLECLVRCNQYDRALDLFDEIVCMGFR-PDKF-TYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLI 211 (808)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 211 (808)
.-.+..+...+...|+++.+...+....+.... ++.. ........+...|++++|..++++..+..+. +...++. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-h
Confidence 445667777777788888887777776654332 2222 2222333466789999999999998876432 4444442 2
Q ss_pred HHHH----ccCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 046719 212 SGFC----KEKKIRDAEKLFDEMCQRKLVPT-RVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCK 286 (808)
Q Consensus 212 ~~~~----~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 286 (808)
..+. ..+....+.+.+... ....|+ ......+...+...|++++|...+++..+..+ .+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHH
Confidence 2222 244555555555441 112233 33445566778889999999999999888643 345677788888888
Q ss_pred cCChhHHHHHHHHHHHCCC-CCCH--hhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 046719 287 AKRMEEAKSVCKEMEAHGF-DPDG--FTYSMLFDGYSKCGDGEGVMALYEELSGR 338 (808)
Q Consensus 287 ~g~~~~A~~~~~~m~~~g~-~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 338 (808)
.|++++|...+++..+... .|+. ..|..+...+...|++++|..++++....
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 9999999999888876422 1222 23556778888888888888888887543
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=5.6e-08 Score=98.30 Aligned_cols=143 Identities=18% Similarity=0.140 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHH
Q 046719 639 IVAVEKLFNEMLQ-INLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEVKELV 716 (808)
Q Consensus 639 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~ 716 (808)
.....++|-++.. .+..+|..+...|.-.|--.|++++|+..|+.++. ++|+ ...||.|+..+....+.++|+..|
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 3445566666654 34347888899999999999999999999999998 6774 559999999999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCC---------CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 046719 717 NDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENG---------FIPSFCIYNELTNGLKQEGKLKEAQIL 785 (808)
Q Consensus 717 ~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~l~~~l~~~g~~~~A~~~ 785 (808)
+++++ +.|+ ...+..|+-+|...|.|++|.+.|-+++... +.++..+|..|=.++...++.+-+...
T Consensus 488 ~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 488 NRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 99999 7887 4567788889999999999999999987532 222345777777788888887755544
No 101
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.00 E-value=4.9e-05 Score=76.72 Aligned_cols=186 Identities=16% Similarity=0.162 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 046719 430 MDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMG---HFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIV 506 (808)
Q Consensus 430 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 506 (808)
.+++..+++..+..-...+..+|..+.+.--..- +.+.....++++...-...-..+|..+++...+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455556655544322223334443333211111 2455556666665433333345677788888888888888888
Q ss_pred HHHHHhCCCCc-chhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 046719 507 LKDMENRGVLP-NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGL 585 (808)
Q Consensus 507 ~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 585 (808)
|.++.+.+..+ ++.++++++.-+|. ++.+-|.++|+.-+++ +..++.-....++-+...++-..+..+|++.+..++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 88888876666 66677777777664 6777888888877765 444555556777778888888888888888887755
Q ss_pred CCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 046719 586 NPD--VITYNSLISGYSSLGSSQKCLELYENMKK 617 (808)
Q Consensus 586 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 617 (808)
.++ ...|..+++.-..-|+...++++-+++..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 554 36788888888888888888887776664
No 102
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=1.3e-08 Score=99.99 Aligned_cols=227 Identities=15% Similarity=0.053 Sum_probs=117.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH-HHHH
Q 046719 557 FNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLL-SGCI 635 (808)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~ 635 (808)
...+.+++...|+++.++ .++.... .|.......+...+...++.+.++.-+++.......++..++..+. ..+.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 334445555556554332 2222221 4444444444443333334444444443333222221222222211 2233
Q ss_pred HcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcC--CHhH
Q 046719 636 REG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMT-YNSLIFGHLREG--KLSE 711 (808)
Q Consensus 636 ~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~-~~~l~~~~~~~g--~~~~ 711 (808)
..| +++|.+++.+. .+.......+.+|.+.++++.|.+.++.|.+ +..|... -..-.|.....| .+.+
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHHHHHHHHHHHHHHHTTTCCCH
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHhCchhHHH
Confidence 445 66666655432 2344555566777777777777777777766 3444442 222223332333 5777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHH
Q 046719 712 VKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKL-KEAQILCSEIS 790 (808)
Q Consensus 712 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~-~~A~~~~~~~~ 790 (808)
|..+|+++.+. ..+++.+.+.++.++...|++++|.+.++++++.++. ++.++..++.+....|+. +.+.+++.++.
T Consensus 186 A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 186 AFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 77777776553 4456667777777777777777777777777766655 666666777776777776 55666777776
Q ss_pred HcCCCCC
Q 046719 791 IVGKDAW 797 (808)
Q Consensus 791 ~~~~~~~ 797 (808)
...|++.
T Consensus 264 ~~~p~h~ 270 (290)
T PF04733_consen 264 QSNPNHP 270 (290)
T ss_dssp HHTTTSH
T ss_pred HhCCCCh
Confidence 6666543
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=9.9e-07 Score=81.49 Aligned_cols=289 Identities=13% Similarity=0.050 Sum_probs=134.3
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHH-HHHHHHHhc
Q 046719 279 SLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCS-ILLNALCKE 357 (808)
Q Consensus 279 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~ 357 (808)
+++..+.+..++++|++++..-.+.... +....+.|..+|....++..|...|+++....++ ..-|. .-...+.+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~--~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE--LEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH--HHHHHHHHHHHHHHh
Confidence 3333444445555555555544443211 3344445555555555555555555555443211 11111 112333445
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046719 358 GKVEIAEEIVGKEIENGLVPDEVMFNTIVS--GYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEE 435 (808)
Q Consensus 358 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 435 (808)
+.+.+|.++...|.+. ++...-..-+. .....+++..+..++++....| +..+.+.......+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 5555555555554431 11111011111 1123455555555555544221 33344444444455566666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----------------------------hhH
Q 046719 436 WVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNV----------------------------VSY 487 (808)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~----------------------------~~~ 487 (808)
-|+...+-+--.....|+.-+. ..+.|+++.|++...++.++|++..+ ..+
T Consensus 166 kFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 6665555322223344544433 23445566666666666555432111 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC-CCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 046719 488 GSLINWLCKDCKLLEAEIVLKDMENRG-VLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCK 566 (808)
Q Consensus 488 ~~ll~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 566 (808)
|.-...+.+.++++.|.+.+..|.-+. ...|++|...+.-.- ..+++.+..+-+.-++.... ....||..++-.||+
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCK 322 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhh
Confidence 222223445666777776666664331 233556555443221 23444444444555554422 345677777777777
Q ss_pred cCChHHHHHHHHH
Q 046719 567 KGRVMEAEDMLPQ 579 (808)
Q Consensus 567 ~g~~~~A~~~~~~ 579 (808)
+.-++.|.+++.+
T Consensus 323 Neyf~lAADvLAE 335 (459)
T KOG4340|consen 323 NEYFDLAADVLAE 335 (459)
T ss_pred hHHHhHHHHHHhh
Confidence 7777777666654
No 104
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.95 E-value=8.4e-05 Score=75.11 Aligned_cols=186 Identities=8% Similarity=0.063 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 046719 535 IKDAFKFFDEMVKREMGPTLVTFNALINGLCKKG---RVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLEL 611 (808)
Q Consensus 535 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 611 (808)
.+++..++++.+..-...+..+|..+.+.--..- +.+....+++++...-..--..+|..+++...+..-++.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4556666666655433334444444443221111 2555666666666532122235677788888888888889999
Q ss_pred HHHHHHCCCCc-CHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 046719 612 YENMKKLGIKP-SLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIR 690 (808)
Q Consensus 612 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 690 (808)
|.+..+.+..+ ...+..+++.-++..+.+.|.++|+--+++ ...+...-...++-+...++-..|..+|++.+..++.
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 99888877666 667778888888887788888888876654 2344455566777778888888899999998887777
Q ss_pred CCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 691 PDK--MTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 691 pd~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
||. .+|..++.--+.-|+.+.+.++-++...
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 665 3888888888888988888888777643
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.95 E-value=0.00011 Score=87.61 Aligned_cols=335 Identities=11% Similarity=-0.008 Sum_probs=195.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCCH--HHHHHHHHHH
Q 046719 388 GYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGV------SPNV--KTNNTLIDGY 459 (808)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~--~~~~~l~~~~ 459 (808)
.....|+++.+...++.+.......+..........+...|+++++..++......-. .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677776666665542111111222223334445667888888888877654310 1111 1122233455
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CcchhHHHHHHHHHH
Q 046719 460 GRMGHFDKCFQILEEMENSGMKPNV----VSYGSLINWLCKDCKLLEAEIVLKDMENR----GV-LPNAQIYNMLIDGSC 530 (808)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~-~~~~~~~~~li~~~~ 530 (808)
...|++++|...+++....-...+. ...+.+...+...|++++|...+.+.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6788899988888887653111121 23455556677788999888888777542 11 111234455666778
Q ss_pred hcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHH
Q 046719 531 TMGRIKDAFKFFDEMVKR----EMG--P-TLVTFNALINGLCKKGRVMEAEDMLPQITSS--GLNP--DVITYNSLISGY 599 (808)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~--~~~~~~~l~~~~ 599 (808)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 889999998888877652 211 1 1233445556677789999998888877542 1112 133445566677
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCc-CHHhHH-----HHHHHHHHcC-HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 046719 600 SSLGSSQKCLELYENMKKLGIKP-SLRTYH-----PLLSGCIREG-IVAVEKLFNEMLQINLVPD---LLVYNALIHCYA 669 (808)
Q Consensus 600 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~-----~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 669 (808)
...|++++|...+.+........ ....+. ..+..+...| .+.+.+++........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 78899999988888775421111 111110 1112233455 7777777666443211111 112345667778
Q ss_pred ccCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046719 670 EHGDVQKALVLHSEMVDQ----GIRPDK-MTYNSLIFGHLREGKLSEVKELVNDMKVK 722 (808)
Q Consensus 670 ~~g~~~~A~~~~~~~~~~----g~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 722 (808)
..|++++|...++++.+. |..++. .++..++.++...|+.++|...+.++.+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888889998888887653 322222 25667778888889999998888888764
No 106
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.94 E-value=0.00016 Score=77.71 Aligned_cols=235 Identities=14% Similarity=0.104 Sum_probs=145.6
Q ss_pred hhhhHHHHHHHHhCCCchHHHHHHHHHHhcCCCCCCChhhHHhhhhccCCCCCccHHHHHHHH--HHcCCChhHHHHHHH
Q 046719 46 RNEQVRKIRILFQNNRTEAAQSLIKSIVLSNASPFTSPHELFSLFSVSSPYYKPTFTNILLSI--LSSAKLPSEALQLYA 123 (808)
Q Consensus 46 ~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 123 (808)
.+.+.+.|--++..+++..|....++++.+.|+. + ....+.+ +.+.|+.++|..+++
T Consensus 9 ~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~-------------------~--~a~vLkaLsl~r~gk~~ea~~~Le 67 (932)
T KOG2053|consen 9 SERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNA-------------------L--YAKVLKALSLFRLGKGDEALKLLE 67 (932)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCc-------------------H--HHHHHHHHHHHHhcCchhHHHHHh
Confidence 3456777888889999999999988888776521 1 1122333 568899999998887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC
Q 046719 124 STKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPN 203 (808)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 203 (808)
.....+.. |..+...+-.+|.+.++.++|..+|+++... .|+......+..+|+|-+.+..-.+.--++-+. .+-+
T Consensus 68 ~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~ 143 (932)
T KOG2053|consen 68 ALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKR 143 (932)
T ss_pred hhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcc
Confidence 77655544 7788999999999999999999999999875 445777777888888888776533333333332 1223
Q ss_pred hhhHHHHHHHHHccCC----------HhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHH-HHHhCCCC
Q 046719 204 VFVYNVLISGFCKEKK----------IRDAEKLFDEMCQRK-LVPTRVTYNTLVDGYCKVGEFEKVSALRE-RMKRDKVE 271 (808)
Q Consensus 204 ~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~ 271 (808)
...+=++++.+.+.-. +.-|.+.++.+.+.+ ..-+..-...-...+-..|++++|.+++. ...+.-..
T Consensus 144 ~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~ 223 (932)
T KOG2053|consen 144 AYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTS 223 (932)
T ss_pred cchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccc
Confidence 3333344444433211 223455555555543 11122222222344456777777777773 33332233
Q ss_pred cCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 272 VSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGF 305 (808)
Q Consensus 272 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 305 (808)
-+...-+--+..+...+++.+..++-.++...|.
T Consensus 224 ~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 224 ANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred cchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 3444444555666667777777777777776653
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.93 E-value=7.5e-08 Score=99.93 Aligned_cols=217 Identities=18% Similarity=0.142 Sum_probs=122.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHc
Q 046719 558 NALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIRE 637 (808)
Q Consensus 558 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 637 (808)
..+...+...|-...|..+|+++- .|.-.|.+|...|+..+|.++..+-.++ +|++..|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 344444555555555555555433 3444455555555555555555554441 45555555555554444
Q ss_pred C-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHH
Q 046719 638 G-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKEL 715 (808)
Q Consensus 638 ~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~ 715 (808)
. ++.|.++++..... .-..+.....+.++++++.+.|+...+ +.| -..+|..++.+..+.++++.|.+.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 4 55555555443221 011111122335667777777776666 333 333666666666777777777777
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 046719 716 VNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 716 ~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
|...+. ..|| ...|+.+..+|.+.|+..+|...++++++.+.+ +..+|........+-|.+++|++.+.++.+.+.
T Consensus 542 F~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 542 FHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 777665 4554 455777777777777777777777777766644 556666666666667777777777776666554
Q ss_pred CCC
Q 046719 795 DAW 797 (808)
Q Consensus 795 ~~~ 797 (808)
+..
T Consensus 619 ~~~ 621 (777)
T KOG1128|consen 619 KYK 621 (777)
T ss_pred hcc
Confidence 433
No 108
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.92 E-value=0.00019 Score=77.16 Aligned_cols=116 Identities=17% Similarity=0.204 Sum_probs=64.6
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChH
Q 046719 109 LSSAKLPSEALQLYASTKADGTRLSLDSINVLLE--CLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLK 186 (808)
Q Consensus 109 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 186 (808)
....+.+..|+...+.+.+.. |+.. +..++. .+.|.|+.++|..+++..-..+.. |..|...+...|.+.|.++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 345566666766666665542 2322 222222 345666677776555544333333 6666666666666677777
Q ss_pred HHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHH
Q 046719 187 RACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEM 230 (808)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 230 (808)
+|..+|++..+. .|+......+..+|.+.+++.+-.+.=-+|
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~L 136 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQL 136 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766654 344555556666666666665444433333
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.91 E-value=4.2e-08 Score=85.95 Aligned_cols=98 Identities=13% Similarity=-0.004 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQE 776 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 776 (808)
.++..+...|++++|...|++++. +.| +...|..++.++...|++++|+..|+++++.+|. +...+..++.++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHc
Confidence 445555555555555555555555 333 3445555555555555555555555555555544 555555555555555
Q ss_pred CChhHHHHHHHHHHHcCCCCCc
Q 046719 777 GKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 777 g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
|+.++|+..+++++...|++..
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADAS 127 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChH
Confidence 5555555555555555555544
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.88 E-value=1.2e-05 Score=95.49 Aligned_cols=374 Identities=10% Similarity=-0.001 Sum_probs=167.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 046719 382 FNTIVSGYCRTGDLNRAMLAIQQMENHGLAPN-CITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYG 460 (808)
Q Consensus 382 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (808)
.......+...|++.+|.......... +. ..............|+++.+..++..+.......+..........+.
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 344455566677777666544433111 00 00111122233445666666666554421101111222233344455
Q ss_pred hcCChHHHHHHHHHHHHCCCC------CC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcch----hHHHHHHHH
Q 046719 461 RMGHFDKCFQILEEMENSGMK------PN--VVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNA----QIYNMLIDG 528 (808)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~~~~------~~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~ 528 (808)
..|+++++..++.+....--. +. ......+...+...|++++|...++.....-...+. ...+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 667777777777665432100 01 111111223344566777777766665542111111 123444455
Q ss_pred HHhcCCHHHHHHHHHHHHHcC--C-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCC--C-CHHHHHHHH
Q 046719 529 SCTMGRIKDAFKFFDEMVKRE--M-GP--TLVTFNALINGLCKKGRVMEAEDMLPQITS----SGLN--P-DVITYNSLI 596 (808)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~--~-~~~~~~~l~ 596 (808)
+...|++++|...+++..... . .+ ...++..+...+...|++++|...+++... .+.. + ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 556677777766666665320 0 01 122334445556666777777666666543 1111 0 112233444
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCC--CCcC--HHhHHHHHHHHHHcC-HHHHHHHHHHHHHCC--CCCCHH--H--HHHHH
Q 046719 597 SGYSSLGSSQKCLELYENMKKLG--IKPS--LRTYHPLLSGCIREG-IVAVEKLFNEMLQIN--LVPDLL--V--YNALI 665 (808)
Q Consensus 597 ~~~~~~g~~~~A~~~~~~~~~~~--~~p~--~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~--~~~~~~--~--~~~l~ 665 (808)
..+...|++++|...+.+..... ..+. ...+..+.......| .++|.+.+.++.... ...... . ....+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 44555666666666666654321 1111 112222333344455 666666655554310 000000 0 00111
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCC-HHHHHHHHHH
Q 046719 666 HCYAEHGDVQKALVLHSEMVDQGIRPDK---MTYNSLIFGHLREGKLSEVKELVNDMKVK----GLIPK-ADTYNILVKG 737 (808)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~~~~~g~~pd~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~ 737 (808)
..+...|+.+.|...+............ ..+..++.++...|++++|...++++... |..++ ..+...++.+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 2233456666666665544321100010 01234555556666666666666665432 11111 2234455555
Q ss_pred HHccCChhHHHHHHHHHHHCC
Q 046719 738 YCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~~~ 758 (808)
+.+.|+.++|...+.++++..
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 666666666666666666554
No 111
>PLN02789 farnesyltranstransferase
Probab=98.87 E-value=2.4e-06 Score=85.16 Aligned_cols=219 Identities=13% Similarity=0.133 Sum_probs=143.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC---HH
Q 046719 566 KKGRVMEAEDMLPQITSSGLNP-DVITYNSLISGYSSLG-SSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG---IV 640 (808)
Q Consensus 566 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~ 640 (808)
..++.++|+.+..++++. .| +..+|+.....+...| .+++++..++++.+.. +.+..+|+.....+.+.| .+
T Consensus 49 ~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 49 SDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred cCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence 345666777777776664 33 3345555555555555 4677777777777642 334445554444444444 25
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH----hHHH
Q 046719 641 AVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLRE---GKL----SEVK 713 (808)
Q Consensus 641 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~---g~~----~~A~ 713 (808)
++..+++++++.+ +.+...|+....++...|++++|++.++++++.+ +-|...|+....++.+. |.+ ++++
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 6677777777754 4567788888888888888888999888888853 22555777777666654 222 4677
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHcc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----------
Q 046719 714 ELVNDMKVKGLIP-KADTYNILVKGYCNL----KDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG----------- 777 (808)
Q Consensus 714 ~~~~~~~~~g~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g----------- 777 (808)
.+..++++ ..| |...|..+...+... ++..+|.+...+..+.++. +...+..|+..|....
T Consensus 204 ~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~ 280 (320)
T PLN02789 204 KYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVD 280 (320)
T ss_pred HHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhh
Confidence 77777776 445 567788777777763 4456788888887776655 6777778888887632
Q ss_pred -------ChhHHHHHHHHHHHc
Q 046719 778 -------KLKEAQILCSEISIV 792 (808)
Q Consensus 778 -------~~~~A~~~~~~~~~~ 792 (808)
..++|.++++.+.+.
T Consensus 281 ~~~~~~~~~~~a~~~~~~l~~~ 302 (320)
T PLN02789 281 TLAEELSDSTLAQAVCSELEVA 302 (320)
T ss_pred ccccccccHHHHHHHHHHHHhh
Confidence 346788888887443
No 112
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=7.5e-07 Score=90.39 Aligned_cols=249 Identities=14% Similarity=0.102 Sum_probs=171.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 046719 494 LCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEA 573 (808)
Q Consensus 494 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 573 (808)
+.+.|++.+|.-.|+...+.++. +...|.-|.......++-..|+..+.+.++.. +.|......|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 45566666777777776666433 66677777777777777777777777777653 33566677777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH---------HHHHcCCCHHHHHHHHHHHH-HCCCCcCHHhHHHHHHHHHHcC-HHHH
Q 046719 574 EDMLPQITSSGLNPDVITYNSLI---------SGYSSLGSSQKCLELYENMK-KLGIKPSLRTYHPLLSGCIREG-IVAV 642 (808)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~~-~~~a 642 (808)
+++++.-+...++ . .|.... ..+..........++|-++. ..+..+|+.+...|.-.|--.| ++.|
T Consensus 373 l~~L~~Wi~~~p~--y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK--Y-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHhCcc--c-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 7777776543211 0 000000 01111222334455555554 4444477777777777777777 9999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 643 EKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
...|+.++... +.|..+||-|...++...+.++|+.-|.++++ +.|+.+ +...|+-.|...|.+++|.+.|-.++.
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999998864 56788999999999999999999999999999 789877 778999999999999999999888653
Q ss_pred ---CC------CCCCHHHHHHHHHHHHccCChhHHHHH
Q 046719 722 ---KG------LIPKADTYNILVKGYCNLKDFGGAYIW 750 (808)
Q Consensus 722 ---~g------~~p~~~~~~~l~~~~~~~g~~~~A~~~ 750 (808)
++ ..++...|..|-.++...++.|-+...
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 21 122345788777777777877755443
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.79 E-value=3.1e-07 Score=85.18 Aligned_cols=124 Identities=8% Similarity=-0.060 Sum_probs=76.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-HccCC--hhH
Q 046719 671 HGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGY-CNLKD--FGG 746 (808)
Q Consensus 671 ~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~-~~~g~--~~~ 746 (808)
.++.++++..+++.++. -+.|...|..|+..|...|++++|...++++.+ +.| +...+..++.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 45556666666666653 123444666666666666666666666666666 334 455555656553 45555 366
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 747 AYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 747 A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
|..+++++++.++. +...+..++..+.+.|++++|+..++++++..|.+.+
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 66666666666655 6666666666666666666666666666666665555
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.77 E-value=3.6e-07 Score=80.04 Aligned_cols=123 Identities=12% Similarity=0.037 Sum_probs=100.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 643 EKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
..++++.++ +.|+. +..+...+...|++++|...|+.++. +.| +...|..++.++...|++++|+..|+++.+
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 345666665 34543 45677888999999999999999998 455 556899999999999999999999999998
Q ss_pred CCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 722 KGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLK 774 (808)
Q Consensus 722 ~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 774 (808)
..| +...+..++.++...|++++|+..|+++++..|. ++..+...+..+.
T Consensus 87 --l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 --LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQNAQI 137 (144)
T ss_pred --cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 455 6788999999999999999999999999998776 7777766655543
No 115
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=3.4e-06 Score=76.58 Aligned_cols=193 Identities=12% Similarity=0.173 Sum_probs=115.0
Q ss_pred cCChHHHHHHHHHHHh---CC-CCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH-HHHcC-H
Q 046719 567 KGRVMEAEDMLPQITS---SG-LNPDVI-TYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSG-CIREG-I 639 (808)
Q Consensus 567 ~g~~~~A~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~-~ 639 (808)
..+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++.+... + |...-...+-.. +...| +
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 3466777777777653 23 344443 3444444555677777777777777664 2 443333333333 23344 7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 046719 640 VAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDM 719 (808)
Q Consensus 640 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~ 719 (808)
++|.++++.+++.+ +.|.+++---+-+.-..|+--+|++.+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 77777777777654 455566655555555566666777766666664 5556667777777777777777777777776
Q ss_pred HHCCCCC-CHHHHHHHHHHHHccC---ChhHHHHHHHHHHHCCCCCCHHHH
Q 046719 720 KVKGLIP-KADTYNILVKGYCNLK---DFGGAYIWYREMFENGFIPSFCIY 766 (808)
Q Consensus 720 ~~~g~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~ 766 (808)
+- +.| ++-.+..++..+.-.| +.+-|.++|.++++..+. +...+
T Consensus 181 ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~-~~ral 228 (289)
T KOG3060|consen 181 LL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK-NLRAL 228 (289)
T ss_pred HH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH-hHHHH
Confidence 65 455 3444455666655444 456667777777766543 44433
No 116
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=9.8e-07 Score=86.80 Aligned_cols=153 Identities=20% Similarity=0.173 Sum_probs=94.3
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHccC
Q 046719 597 SGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVY---NALIHCYAEHG 672 (808)
Q Consensus 597 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g 672 (808)
..+...|++++|++++.+. .+.......+..+.+.+ .+.|.+.++.|.+. ..|.... .+.+....-..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCch
Confidence 3445566666666665431 33444555566666666 66666666666653 3343222 12222222234
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-hHHHHHH
Q 046719 673 DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDF-GGAYIWY 751 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~ 751 (808)
.+.+|..+|+++.+. ..++..+.+.++.++...|++++|.++++++.+.+ +-++.+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 688888888887764 56677788888888888888888888888877642 23567777777777777877 5566777
Q ss_pred HHHHHCCC
Q 046719 752 REMFENGF 759 (808)
Q Consensus 752 ~~~~~~~~ 759 (808)
.++....|
T Consensus 260 ~qL~~~~p 267 (290)
T PF04733_consen 260 SQLKQSNP 267 (290)
T ss_dssp HHCHHHTT
T ss_pred HHHHHhCC
Confidence 77766543
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.75 E-value=1e-06 Score=85.65 Aligned_cols=186 Identities=11% Similarity=0.037 Sum_probs=118.7
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC-H---HhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCH--HH
Q 046719 588 DVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS-L---RTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDL--LV 660 (808)
Q Consensus 588 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~ 660 (808)
....+..++..+...|++++|...|+++... .|+ . ..+..+...+...| +++|...++++++....... ..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4556677777778888888888888887764 232 1 34455556666666 77777777777764321111 13
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHH
Q 046719 661 YNALIHCYAEH--------GDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTY 731 (808)
Q Consensus 661 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 731 (808)
+..+..++... |++++|.+.++++.+. .|+.. .+..+...... ... . ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~----~~~------~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYL----RNR------L--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHH----HHH------H--------HHHH
Confidence 44445555443 5667777777777663 34332 22222111000 000 0 0011
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 732 NILVKGYCNLKDFGGAYIWYREMFENGFI-P-SFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 732 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
..++..+.+.|++++|+..++++++..+. | ....+..++.++.+.|++++|..+++.+....|+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35677788999999999999999987553 2 3678999999999999999999999998876653
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.75 E-value=2.3e-06 Score=94.14 Aligned_cols=139 Identities=11% Similarity=-0.014 Sum_probs=110.5
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHH
Q 046719 654 LVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTY 731 (808)
Q Consensus 654 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~ 731 (808)
...+...+-.|..+..+.|++++|..+++.+.+ +.||.. ....++.++.+.+++++|...++++.. ..|+ ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHH
Confidence 345577777888888888888888888888888 577665 677788888888888888888888887 4564 5667
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 046719 732 NILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 732 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 797 (808)
..++.++.+.|++++|..+|+++++.++. +...+..++.+|.+.|+.++|...|+++++......
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 78888888888888888888888875554 678888888888888888888888888887665443
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.70 E-value=2.9e-06 Score=77.93 Aligned_cols=157 Identities=13% Similarity=0.061 Sum_probs=121.4
Q ss_pred HHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046719 628 HPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLRE 706 (808)
Q Consensus 628 ~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~ 706 (808)
..+-..+...| -+....+..+.... .+.|......++....+.|++.+|...+.+.... -++|...|+.++.+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 33344455555 44444444443332 2456667777888889999999999999999884 355777999999999999
Q ss_pred CCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 046719 707 GKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQIL 785 (808)
Q Consensus 707 g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~ 785 (808)
|++++|..-+.++.+ +.| ++...+.++..+.-.||++.|..++.++...+.. |..+-..|+......|++++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 999999999999988 555 4677888888888999999999999998887655 888888899999999999999887
Q ss_pred HHHH
Q 046719 786 CSEI 789 (808)
Q Consensus 786 ~~~~ 789 (808)
..+-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 6544
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=1.6e-06 Score=90.41 Aligned_cols=238 Identities=16% Similarity=0.141 Sum_probs=181.2
Q ss_pred CCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 046719 514 GVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYN 593 (808)
Q Consensus 514 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 593 (808)
+.+|-...-..+...+...|-...|+.+|++.. .|..++..|+..|+..+|..+..+..++ +||...|.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc 461 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYC 461 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHH
Confidence 345555666777888889999999999998764 4566778888999999999998888874 78889999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 046719 594 SLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHG 672 (808)
Q Consensus 594 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 672 (808)
.+.+..-...-+++|.++.+..... .-..+.......+ ++++.+-|+.-.+.+ +-...+|-.+..+..+.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHh
Confidence 9998888888889999988876542 0011111111234 888888888877754 445678888888888999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 046719 673 DVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWY 751 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 751 (808)
+++.|.+.|..... ..||.. .||++..+|.+.|+..+|...++++.+.. ..+...|....-...+.|.+++|++.+
T Consensus 534 k~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred hhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHH
Confidence 99999999999988 677665 89999999999999999999999998865 445666777777778999999999999
Q ss_pred HHHHHC--CCCCCHHHHHHHHHHHH
Q 046719 752 REMFEN--GFIPSFCIYNELTNGLK 774 (808)
Q Consensus 752 ~~~~~~--~~~~~~~~~~~l~~~l~ 774 (808)
.++.+. ... |..+...++....
T Consensus 611 ~rll~~~~~~~-d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 611 HRLLDLRKKYK-DDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHhhhhcc-cchhhHHHHHHHH
Confidence 998863 223 5555555554443
No 121
>PLN02789 farnesyltranstransferase
Probab=98.70 E-value=5.4e-06 Score=82.73 Aligned_cols=196 Identities=10% Similarity=0.072 Sum_probs=152.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHHcC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 046719 595 LISGYSSLGSSQKCLELYENMKKLGIKPS-LRTYHPLLSGCIREG--IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEH 671 (808)
Q Consensus 595 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 671 (808)
+-..+...++.++|+.++.++++. .|+ ..+|+.....+...+ ++++...++++++.+ +.+..+|+....++.+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 333445678899999999999974 455 445665555666666 789999999999865 45566788777677777
Q ss_pred CCH--HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CCh-
Q 046719 672 GDV--QKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNL---KDF- 744 (808)
Q Consensus 672 g~~--~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~~- 744 (808)
|+. ++++.+++++++. .| |..+|+...+++...|+++++++.++++++.+ ..|...|+....++.+. |++
T Consensus 120 ~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 120 GPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred CchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccccc
Confidence 763 7889999999984 55 56699999999999999999999999999854 33678888888777665 333
Q ss_pred ---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHHHcCCCCC
Q 046719 745 ---GGAYIWYREMFENGFIPSFCIYNELTNGLKQE----GKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 745 ---~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~A~~~~~~~~~~~~~~~ 797 (808)
++++.+..++++..|. +...|+.+...|... ++..+|...+.++.+.+++..
T Consensus 197 ~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~ 255 (320)
T PLN02789 197 AMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHV 255 (320)
T ss_pred ccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcH
Confidence 5788889899998887 888999898888873 456789999999888666533
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.69 E-value=5.1e-07 Score=79.00 Aligned_cols=115 Identities=11% Similarity=0.017 Sum_probs=74.2
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 680 LHSEMVDQGIRPDK-MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 680 ~~~~~~~~g~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
+++++++ ..|+. .....++..+...|++++|.+.++++...+ +.+...|..++.++.+.|++++|..+++++++.+
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455554 34433 345566666677777777777777766532 2245666667777777777777777777776665
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 759 FIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 759 ~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+. +...+..++.++...|++++|...++++++..|++..
T Consensus 82 p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PD-DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 5666667777777777777777777777777666555
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.65 E-value=1.9e-05 Score=88.18 Aligned_cols=206 Identities=14% Similarity=0.108 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHH
Q 046719 413 NCITFNTLIDKFCELGEMDKAEEWVKRMLEK-GVS---PNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYG 488 (808)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 488 (808)
....|-..+....+.++.++|+++.++++.. ++. --...|.+++..-..-|.-+...++|++..+. ......|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3444555555555556666666665555542 111 01234555555555555555566666666543 22234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHh
Q 046719 489 SLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGP--TLVTFNALINGLCK 566 (808)
Q Consensus 489 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 566 (808)
.|...|.+.+++++|.++++.|.++ ..-....|...++.+.+.++-+.|..++.++++. .+. -.....-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHhh
Confidence 6666666666666666666666554 2234556666666666666666666666666653 111 13333444455556
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC
Q 046719 567 KGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS 623 (808)
Q Consensus 567 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 623 (808)
.|+.+.++.+|+..+... +.-...|+.+++.-.++|+.+.+..+|++.+..++.|-
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 666666666666666542 22345666666666666666666666666666655554
No 124
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.62 E-value=2.9e-05 Score=86.86 Aligned_cols=231 Identities=13% Similarity=0.094 Sum_probs=150.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 046719 518 NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR-EMG---PTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYN 593 (808)
Q Consensus 518 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 593 (808)
....|-..|....+.++.++|.+++++++.. ++. --.-+|.++++....-|.-+...++|+++.+.. .....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4556777777777888888888888877764 111 123456777777777777777777888777631 1245677
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 046719 594 SLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPD---LLVYNALIHCYA 669 (808)
Q Consensus 594 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 669 (808)
.|...|.+.+++++|.++|+.|.++ +......|...+..+.+.+ -+.|..++.++++. .|. .....-.+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 7777888888888888888888774 3455667777777777777 67777777777763 232 233344455667
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChhHH
Q 046719 670 EHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA--DTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 670 ~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A 747 (808)
+.|+.+.+..+|+..+.. .+--...|+.++..-.++|+.+.+..+|++++..++.|-. ..|...+..-...|+-+.+
T Consensus 1612 k~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 778888888888887764 2223446788888888888888888888888877766632 2333444333344554444
Q ss_pred HHHHHHH
Q 046719 748 YIWYREM 754 (808)
Q Consensus 748 ~~~~~~~ 754 (808)
...-.++
T Consensus 1691 E~VKarA 1697 (1710)
T KOG1070|consen 1691 EYVKARA 1697 (1710)
T ss_pred HHHHHHH
Confidence 3333333
No 125
>PF12854 PPR_1: PPR repeat
Probab=98.62 E-value=4.8e-08 Score=60.18 Aligned_cols=32 Identities=47% Similarity=0.818 Sum_probs=15.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 046719 234 KLVPTRVTYNTLVDGYCKVGEFEKVSALRERM 265 (808)
Q Consensus 234 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 265 (808)
|+.||.+||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 126
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=8.3e-08 Score=59.13 Aligned_cols=32 Identities=47% Similarity=0.927 Sum_probs=23.4
Q ss_pred CCCCChhhHHHHHHHHHccCCHhHHHHHHHHH
Q 046719 199 RTRPNVFVYNVLISGFCKEKKIRDAEKLFDEM 230 (808)
Q Consensus 199 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 230 (808)
|+.||..+||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777766
No 127
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.55 E-value=1e-05 Score=75.14 Aligned_cols=117 Identities=14% Similarity=0.179 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-HhcCC--HhHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGH-LREGK--LSEVKE 714 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~-~~~g~--~~~A~~ 714 (808)
.+++...+++.++.+ +.+...|..+...|...|++++|...|++..+ +.| +...+..++.++ ...|+ .++|.+
T Consensus 55 ~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 55 PEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 566666677777654 66788999999999999999999999999999 456 555888888874 67777 599999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 715 LVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 715 ~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+++++++ ..| +...+..++..+.+.|++++|+..|+++++..+.
T Consensus 132 ~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 132 MIDKALA--LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999998 455 5788899999999999999999999999987654
No 128
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.55 E-value=1.9e-06 Score=73.62 Aligned_cols=106 Identities=8% Similarity=-0.061 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGL 773 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 773 (808)
....++..+...|++++|..+|+.+.. +.| +...|..|+.++...|++++|+..|..+...+++ |+..+..++.++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 455777788888888888888888877 556 4666778888888888888888888888888876 888888888888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCchhhhH
Q 046719 774 KQEGKLKEAQILCSEISIVGKDAWTNEDQS 803 (808)
Q Consensus 774 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 803 (808)
...|+.++|++.|+.++..-..+...+.++
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~ 143 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICGEVSEHQILR 143 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhccChhHHHHH
Confidence 888888888888888887765554444443
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.54 E-value=8.5e-06 Score=74.91 Aligned_cols=159 Identities=11% Similarity=0.060 Sum_probs=121.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhc
Q 046719 103 NILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKI 182 (808)
Q Consensus 103 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (808)
..+...+...|+-+..+.+....... .+.+....+..+....+.|++.+|...|.++....+. |...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHHc
Confidence 34556677777777777776665433 2456666777888899999999999999988876544 888999999999999
Q ss_pred CChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 046719 183 GDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALR 262 (808)
Q Consensus 183 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 262 (808)
|++++|..-|.+..+..+. +....|.+.-.|.-.|+.+.|+.++......+.. |..+-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999999999988885332 4556777777777889999999998888776433 6777778888888888988888776
Q ss_pred HHH
Q 046719 263 ERM 265 (808)
Q Consensus 263 ~~~ 265 (808)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 654
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=7.7e-05 Score=68.03 Aligned_cols=196 Identities=16% Similarity=0.192 Sum_probs=135.0
Q ss_pred HhcCCHHHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 046719 530 CTMGRIKDAFKFFDEMVKR---E-MGPTLV-TFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGS 604 (808)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 604 (808)
+...+.++..+++.+++.. | ..++.. .|..++-+....|+.+.|...++.+... ++.+...-..-...+-..|+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhc
Confidence 3456788888888888753 3 444543 3455556667788889999988888775 22222222222333456888
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 046719 605 SQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSE 683 (808)
Q Consensus 605 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 683 (808)
+++|+++|+.+.+.. +.|..++-.=+...-..| ..+|.+-+.+..+. +..|...|.-+...|...|+++.|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 999999999988764 445566665555566666 66777777777765 677888999999999999999999999998
Q ss_pred HHHCCCCC-CHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHCCCCC-CHHHHH
Q 046719 684 MVDQGIRP-DKMTYNSLIFGHLREG---KLSEVKELVNDMKVKGLIP-KADTYN 732 (808)
Q Consensus 684 ~~~~g~~p-d~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p-~~~~~~ 732 (808)
++= +.| +...+..++..+.-.| +..-|.+++.+.++ +.| +...+.
T Consensus 180 ~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l~~~~~ral~ 229 (289)
T KOG3060|consen 180 LLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--LNPKNLRALF 229 (289)
T ss_pred HHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hChHhHHHHH
Confidence 887 456 4446667777766555 46678888888887 455 444433
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.50 E-value=3e-05 Score=86.24 Aligned_cols=237 Identities=12% Similarity=0.095 Sum_probs=122.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 046719 483 NVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPN-AQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALI 561 (808)
Q Consensus 483 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 561 (808)
+...+..|+..+...+++++|..+.+...+. .|+ ...|-.+...+.+.++.+++..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 4455556666666666666666666654443 222 22233333344444443333322 222
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHH
Q 046719 562 NGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVA 641 (808)
Q Consensus 562 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 641 (808)
.......++.-+..+...+... .-+..++..++.+|.+.|+.++|...|+++.+.. +-|..+.+.+...+....+++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~dL~K 167 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEEDKEK 167 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhhHHH
Confidence 2223333343333333334332 1223355556666666666666666666666543 334455555555554444555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 642 VEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 642 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
|.+++.+.+.. +...+++.++.++|.++.+. .|+. ++.-..+.+++..
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d---------------~d~f~~i~~ki~~ 215 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDD---------------FDFFLRIERKVLG 215 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--Cccc---------------chHHHHHHHHHHh
Confidence 55555554431 33344555555555555552 2322 1222222233222
Q ss_pred C-CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 722 K-GLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLK 774 (808)
Q Consensus 722 ~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 774 (808)
. |..--..++.-+-..|.+.++|++++.+++.+++..+. |......++.+|.
T Consensus 216 ~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 216 HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 1 11222345556667788888899999999999988777 7778888888876
No 132
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.50 E-value=0.0017 Score=64.56 Aligned_cols=458 Identities=13% Similarity=0.148 Sum_probs=240.8
Q ss_pred HhCCChHHHHHHHHHHHhCCCCc-----ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHhc
Q 046719 320 SKCGDGEGVMALYEELSGRGFRI-----NSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSG--YCRT 392 (808)
Q Consensus 320 ~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~ 392 (808)
-+.++..++.++|.++.+.--.. .....+.++++|.- .+.+.....+....+.. | ...|-.+..+ +-+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHh
Confidence 36678888888887776542111 01223345555543 34444444444444331 1 1233333333 2366
Q ss_pred CCHHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHH
Q 046719 393 GDLNRAMLAIQQMENH--GLAP------------NCITFNTLIDKFCELGEMDKAEEWVKRMLEK----GVSPNVKTNNT 454 (808)
Q Consensus 393 g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~ 454 (808)
+.+.+|.+.+...... +..+ |-..=+..+.++...|++.+++.+++++... ...-+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 7777777777666554 2211 1111234455666777777777777776654 22356666776
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhc-
Q 046719 455 LIDGYGRMGHFDKCFQILEEMENS-GMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTM- 532 (808)
Q Consensus 455 l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~- 532 (808)
++-++.+. .|-++.+. ....-+. |-.++-.|.+.-...++ -.=..+.|.......++....-.
T Consensus 173 ~vlmlsrS--------YfLEl~e~~s~dl~pd-yYemilfY~kki~~~d~------~~Y~k~~peeeL~s~imqhlfi~p 237 (549)
T PF07079_consen 173 AVLMLSRS--------YFLELKESMSSDLYPD-YYEMILFYLKKIHAFDQ------RPYEKFIPEEELFSTIMQHLFIVP 237 (549)
T ss_pred HHHHHhHH--------HHHHHHHhcccccChH-HHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHHHHHHHHhCC
Confidence 66555442 23333211 0011111 22333333322111111 00001334444444444443322
Q ss_pred -CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHcCCCHH
Q 046719 533 -GRIKDAFKFFDEMVKREMGPTLV-TFNALINGLCKKGRVMEAEDMLPQITSSGLNP----DVITYNSLISGYSSLGSSQ 606 (808)
Q Consensus 533 -g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~ 606 (808)
.+..--+++++.-...-+.|+-. +...+...+.+ +.+++..+.+.+....+.+ =+.++..++....+.++..
T Consensus 238 ~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~ 315 (549)
T PF07079_consen 238 KERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTE 315 (549)
T ss_pred HhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 12222233333333334455532 33444444444 5566666655554432111 1346777778888899999
Q ss_pred HHHHHHHHHHHCCCCcCHHhHH-------HHHHHHHHcC-----HHHHHHHHHHHHHCCCCCCH-HHH-HHHHHHHHccC
Q 046719 607 KCLELYENMKKLGIKPSLRTYH-------PLLSGCIREG-----IVAVEKLFNEMLQINLVPDL-LVY-NALIHCYAEHG 672 (808)
Q Consensus 607 ~A~~~~~~~~~~~~~p~~~~~~-------~l~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~-~~~-~~l~~~~~~~g 672 (808)
+|-+.+.-+.- +.|+...-. .+.+..+..+ ...-..+|+.....++.... ++| -.-+.-+.+.|
T Consensus 316 ~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g 393 (549)
T PF07079_consen 316 EAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIG 393 (549)
T ss_pred HHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcC
Confidence 99888887764 345433211 2223333222 33444556666555433322 222 22234567777
Q ss_pred C-HHHHHHHHHHHHHCCCCC-CHHHHHHHH----HHHHh---cCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHH--
Q 046719 673 D-VQKALVLHSEMVDQGIRP-DKMTYNSLI----FGHLR---EGKLSEVKELVNDMKVKGLIPK----ADTYNILVKG-- 737 (808)
Q Consensus 673 ~-~~~A~~~~~~~~~~g~~p-d~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~-- 737 (808)
. -++|+.+++.+++ +.| |...-|... ..|.+ ...+.+-..+-+-+.+.|+.|- ...-+.|.++
T Consensus 394 ~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEy 471 (549)
T PF07079_consen 394 QCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEY 471 (549)
T ss_pred CccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHH
Confidence 6 8889999999988 444 443333222 22222 2234444455555567788773 4445555554
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCchhhhHhh
Q 046719 738 YCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWTNEDQSAV 805 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 805 (808)
+..+|++.++.-+-....+. .|++.+|..++-++....+++||..++.+++. |-+-+.....+|+
T Consensus 472 Lysqgey~kc~~ys~WL~~i--aPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~-n~~~~dskvqKAl 536 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKI--APSPQAYRLLGLCLMENKRYQEAWEYLQKLPP-NERMRDSKVQKAL 536 (549)
T ss_pred HHhcccHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC-chhhHHHHHHHHH
Confidence 46789999998887777754 67999999999999999999999999988765 4444445555554
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=0.00013 Score=67.07 Aligned_cols=108 Identities=14% Similarity=0.017 Sum_probs=54.3
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 046719 667 CYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHL----REGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLK 742 (808)
Q Consensus 667 ~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 742 (808)
.+.+..+.+-|.+.+++|.+ +. +..|.+-|+.++. ..+++.+|.-+|+++.++ ..|++.+.+..+.++..+|
T Consensus 146 I~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc
Confidence 34444555555555555554 22 2233333333332 233455555555555543 3455555555555555555
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 046719 743 DFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKL 779 (808)
Q Consensus 743 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 779 (808)
++++|..++++++...++ ++.++..++.+-...|+.
T Consensus 222 ~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred CHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 555555555555555544 455555555554455544
No 134
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.48 E-value=2.1e-05 Score=76.52 Aligned_cols=183 Identities=13% Similarity=0.018 Sum_probs=129.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHH--
Q 046719 552 PTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPD-V---ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLR-- 625 (808)
Q Consensus 552 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-- 625 (808)
.....+..+...+...|++++|...++++.... |+ . .++..+..++...|++++|+..++++.+. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~ 106 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDA 106 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCch
Confidence 457778888889999999999999999998753 33 2 46788889999999999999999999975 33322
Q ss_pred --hHHHHHHHHHHc--------C-HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 046719 626 --TYHPLLSGCIRE--------G-IVAVEKLFNEMLQINLVPDL-LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK 693 (808)
Q Consensus 626 --~~~~l~~~~~~~--------~-~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~ 693 (808)
++..+...+... | .++|.+.++++++.. |+. ..+..+.... .... ...
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~----~~~~-------~~~------- 166 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMD----YLRN-------RLA------- 166 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHH----HHHH-------HHH-------
Confidence 344444555543 5 888999999998853 432 2222221110 0000 000
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 694 MTYNSLIFGHLREGKLSEVKELVNDMKVKGL-IP-KADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 694 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
.....++..+.+.|++.+|+..++++++... .| ....+..++.++.+.|++++|..+++.+....
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 1123677788999999999999999887421 12 35788899999999999999999988877643
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=0.00021 Score=71.80 Aligned_cols=206 Identities=16% Similarity=0.158 Sum_probs=129.4
Q ss_pred ChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHH
Q 046719 569 RVMEAEDMLPQITSSG--LNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLF 646 (808)
Q Consensus 569 ~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~ 646 (808)
++.++.+..+++...+ -.|+...+...+.+......-..+..++-+-.+ -.-...-|...+..+.....++|+..+
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHHHHHHhcccchHHHHH
Confidence 3444444444443311 134455555555544333332333322222222 011223344344434333388888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 046719 647 NEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLI 725 (808)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 725 (808)
+.++.. .+.|...+....+.+.+.++.++|.+.++++.. ..|+ ......++.+|.+.|+..+|+.+++..... .+
T Consensus 330 ~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p 405 (484)
T COG4783 330 QPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DP 405 (484)
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CC
Confidence 888775 245566666777888888888888888888888 4666 446667888888888888888888887764 34
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 726 PKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 726 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.|+..|..|..+|...|+..+|.... ++.|.-.|++++|+..+....+...-+.+
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~~~~~~~~ 460 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQQVKLGFP 460 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHHhccCCcH
Confidence 57888888888888888877765543 44556678888888888888877644444
No 136
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.41 E-value=0.00011 Score=81.17 Aligned_cols=132 Identities=9% Similarity=0.074 Sum_probs=73.7
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046719 168 DKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVD 247 (808)
Q Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 247 (808)
++..+-.|.....+.|++++|+.+++.+.+..+. +......+..++.+.+++++|+...++.....+. +......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 4555555666666666666666666666554221 3444555555566666666666666666555332 3444455555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 248 GYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEA 302 (808)
Q Consensus 248 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 302 (808)
++.+.|++++|..+|++....+ +-+..++..+...+...|+.++|...|+...+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5556666666666666665521 12345555555566666666666666666554
No 137
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=2e-06 Score=80.48 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=49.2
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCh
Q 046719 667 CYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDF 744 (808)
Q Consensus 667 ~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~ 744 (808)
-..+.+++++|+..|.++++ +.| |.+-|..-+.+|++.|.++.|++-.+..+. +.|. ..+|..|+.+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 34455556666666666655 333 344445555556666666666655555555 4443 34555566666666666
Q ss_pred hHHHHHHHHHHHCCC
Q 046719 745 GGAYIWYREMFENGF 759 (808)
Q Consensus 745 ~~A~~~~~~~~~~~~ 759 (808)
++|++.|+++++..|
T Consensus 166 ~~A~~aykKaLeldP 180 (304)
T KOG0553|consen 166 EEAIEAYKKALELDP 180 (304)
T ss_pred HHHHHHHHhhhccCC
Confidence 666666666555443
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=0.00051 Score=69.19 Aligned_cols=122 Identities=15% Similarity=-0.027 Sum_probs=65.7
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChh
Q 046719 667 CYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFG 745 (808)
Q Consensus 667 ~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~ 745 (808)
.+...|.+++|+..++.++.. .+-|...+...+..+.+.++.++|.+.+++++. ..|+ ...+..++.+|.+.|+..
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChH
Confidence 344455556666655555553 122333344445555555666666666655555 3444 444455555555566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 746 GAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 746 ~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
+|+.++++.....+. |+..|..|+++|...|+..+|.....+....
T Consensus 392 eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 392 EAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 666655555555444 5555556666666666555555555555443
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.35 E-value=1.9e-05 Score=69.02 Aligned_cols=113 Identities=12% Similarity=-0.016 Sum_probs=91.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 046719 645 LFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGL 724 (808)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 724 (808)
.+++++... +.+......++..+...|++++|...++++.+.+ +.+...+..++..+...|++++|..+++++.+.+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 455555542 2244566778888999999999999999998852 3356688899999999999999999999998843
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 725 IPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 725 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+.+...+..++.++...|++++|..+++++++.++.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 335788889999999999999999999999987654
No 140
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00052 Score=63.33 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 046719 500 LLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR 548 (808)
Q Consensus 500 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 548 (808)
+.+|.-+|++|.++ ..|++.+.+....++...|++++|..++++.+.+
T Consensus 189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 44444444444433 3334444444444444444444444444444443
No 141
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.30 E-value=0.00029 Score=78.69 Aligned_cols=242 Identities=12% Similarity=0.040 Sum_probs=148.0
Q ss_pred CCCCccHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHH
Q 046719 95 PYYKPTFTNILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGK 174 (808)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 174 (808)
.|.+...+..|+..+...+++++|.++.....+.. +.....|-.++..+.+.++++.+..+ .+.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l------------- 90 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLI------------- 90 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhh-------------
Confidence 34455667778888888888999998888666643 33444555555577777776666555 332
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 046719 175 AVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGE 254 (808)
Q Consensus 175 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 254 (808)
.......++.....++..+... .-+...+..+..+|-+.|+.++|..+++++.+..+. |+.+.|.+...|... +
T Consensus 91 --~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 91 --DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D 164 (906)
T ss_pred --hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence 2222233333333334444442 224557788888888999999999999999888743 788888888888888 8
Q ss_pred hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHH
Q 046719 255 FEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEE 334 (808)
Q Consensus 255 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 334 (808)
.++|.+++.+.... |...+++..+..++.++...... +...+..+++.....-
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~----------- 217 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR----------- 217 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh-----------
Confidence 89998888776442 55667788888888888775321 2222222222111110
Q ss_pred HHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 046719 335 LSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYC 390 (808)
Q Consensus 335 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 390 (808)
|..--+.++..+-..|-+..+++++..++..+++.... |.....-++..|.
T Consensus 218 ----~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 ----EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ----ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11111223333455555666666777777766665443 4444555555554
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.29 E-value=3.8e-05 Score=78.14 Aligned_cols=128 Identities=14% Similarity=0.122 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGY 738 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 738 (808)
....+|+..+...++++.|+.+++++.+. .|+.. ..++..+...++-.+|++++++.++. .+-+...+..-+..|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER--DPEVA--VLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc--CCcHH--HHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 34455666667778999999999999885 46543 35778888888888999999998863 223566677777778
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 739 CNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 739 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
...++++.|+++.+++.+..|. +...|..|+.+|.+.|++++|+-.++.++..
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 8899999999999999988777 7889999999999999999999888877643
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.26 E-value=5.1e-05 Score=66.89 Aligned_cols=125 Identities=13% Similarity=0.109 Sum_probs=85.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 046719 661 YNALIHCYAEHGDVQKALVLHSEMVDQGIRPD---KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK--ADTYNILV 735 (808)
Q Consensus 661 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~ 735 (808)
|..++..+ ..++...+...++.+.+.. +.+ ......++..+...|++++|...|+.+.+....|+ ......++
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344343 3778888888888887752 222 12344567778888888888888888887542222 23455678
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 046719 736 KGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEI 789 (808)
Q Consensus 736 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 789 (808)
.++...|++++|+..++..... ...+..+...+.+|.+.|++++|+..|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 8888888888888888664322 224556677888888888888888888765
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.23 E-value=2.8e-05 Score=66.20 Aligned_cols=102 Identities=13% Similarity=0.096 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC--CHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK----ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP--SFCIYNE 768 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ 768 (808)
++..++..+...|++++|.+.++++.+. .|+ ...+..++.++.+.|++++|...++++....+.. ....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3456666677777777777777777653 232 3455667777777777777777777777654432 2456677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 769 LTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 769 l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
++.++.+.|++++|...++++++..|++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 777777777777777777777777766543
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.20 E-value=2.4e-06 Score=67.05 Aligned_cols=81 Identities=15% Similarity=0.092 Sum_probs=45.2
Q ss_pred cCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 046719 706 EGKLSEVKELVNDMKVKGLI-PKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQI 784 (808)
Q Consensus 706 ~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~ 784 (808)
.|+++.|+.+++++.+.... ++...+..++.++.+.|++++|+.++++ .+.++. +......++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666666666653211 1334445566666666666666666666 333332 34455555666666666666666
Q ss_pred HHHH
Q 046719 785 LCSE 788 (808)
Q Consensus 785 ~~~~ 788 (808)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.19 E-value=6.9e-05 Score=66.04 Aligned_cols=113 Identities=17% Similarity=0.117 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHhHHH
Q 046719 639 IVAVEKLFNEMLQINLVPD---LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK--MTYNSLIFGHLREGKLSEVK 713 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~--~~~~~l~~~~~~~g~~~~A~ 713 (808)
...+.+.++.+.+.. +.+ ....-.+...+...|++++|...|+.+.+....|+. .....|+..+...|++++|+
T Consensus 27 ~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al 105 (145)
T PF09976_consen 27 PAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEAL 105 (145)
T ss_pred HHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666777777777653 222 233445667888999999999999999986522222 24557889999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 046719 714 ELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREM 754 (808)
Q Consensus 714 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 754 (808)
..++.... -...+..+...+.++.+.|++++|...|+++
T Consensus 106 ~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 106 ATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 99977433 2234567788999999999999999999876
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.14 E-value=3.3e-05 Score=62.63 Aligned_cols=96 Identities=21% Similarity=0.123 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLK 774 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 774 (808)
+..++..+...|++++|...++++.+. .| +...+..++.++...|++++|.+.++++.+..+. +...+..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHH
Confidence 445566666667777777777766652 33 3355666666666777777777777777665544 4456666777777
Q ss_pred hcCChhHHHHHHHHHHHcCC
Q 046719 775 QEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 775 ~~g~~~~A~~~~~~~~~~~~ 794 (808)
..|++++|...+++..+..|
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhHHHHHHHHHHHHccCC
Confidence 77777777777777665544
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.14 E-value=8.4e-06 Score=61.16 Aligned_cols=67 Identities=16% Similarity=0.121 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCC
Q 046719 727 KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG-KLKEAQILCSEISIVGK 794 (808)
Q Consensus 727 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~A~~~~~~~~~~~~ 794 (808)
++.+|..++..+...|++++|+..|+++++.++. +...+..++.++...| ++++|++.++++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567888888888899999999999999888776 7888888899999988 68999999988888765
No 149
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.07 E-value=1.4e-05 Score=59.03 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=48.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 046719 734 LVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 734 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 796 (808)
++..+.+.|++++|...|+++++..|. +...+..++.++...|++++|..+++++++..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 466777888888888888888887766 77888888888888888888888888888877765
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.06 E-value=5.5e-05 Score=77.64 Aligned_cols=105 Identities=14% Similarity=0.055 Sum_probs=86.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc
Q 046719 663 ALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCN 740 (808)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 740 (808)
..+..+...|++++|+..|+++++. .| +...|..++.+|...|++++|+..++++++ +.| +...|..++.+|..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHH
Confidence 3456677889999999999999984 45 455888999999999999999999999988 556 57788899999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 741 LKDFGGAYIWYREMFENGFIPSFCIYNELTNG 772 (808)
Q Consensus 741 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 772 (808)
.|++++|+..|+++++.++. +......+..+
T Consensus 83 lg~~~eA~~~~~~al~l~P~-~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPG-DSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 99999999999999998776 66655555444
No 151
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.05 E-value=0.00022 Score=61.27 Aligned_cols=98 Identities=9% Similarity=-0.133 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 658 LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK-MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVK 736 (808)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 736 (808)
......+...+...|++++|.++|+-+.. +.|.. .-|..|+-++...|++++|+..+..+...+ +.|+..+..++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34455667778899999999999999988 56654 478899999999999999999999998843 236888999999
Q ss_pred HHHccCChhHHHHHHHHHHHCC
Q 046719 737 GYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 737 ~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
++...|+.+.|.+.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998753
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=7.1e-05 Score=70.39 Aligned_cols=129 Identities=17% Similarity=0.181 Sum_probs=98.2
Q ss_pred HHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCH
Q 046719 632 SGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKL 709 (808)
Q Consensus 632 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~ 709 (808)
+-..+.+ +++|...|.+.++.. +.|.+.|..-..+|.+.|.++.|++-.+..+. +.|... +|..|+.+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 3456667 999999999999964 56778888899999999999999999999998 677766 999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCChh---HHHHHHHHHHHCCCCCCHHH
Q 046719 710 SEVKELVNDMKVKGLIPKADTYN-ILVKGYCNLKDFG---GAYIWYREMFENGFIPSFCI 765 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~ 765 (808)
++|++.|++.++ +.|+..+|. .|-.+--+.+... .+..-.+-....|..|+...
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s 223 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRS 223 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchh
Confidence 999999999998 889766654 4444433444444 44444444444454455443
No 153
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00051 Score=67.35 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=42.5
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccC
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRPDK-----MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLK 742 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~pd~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g 742 (808)
.+.|++.+|.+.|.+.+. +.|+. ..|.....+..+.|+..+|+.-.+...+ +.|. ...+..-+.++...+
T Consensus 260 fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHH
Confidence 455556666666665554 33322 2344444455555566666555555554 3332 223333344444555
Q ss_pred ChhHHHHHHHHHHHC
Q 046719 743 DFGGAYIWYREMFEN 757 (808)
Q Consensus 743 ~~~~A~~~~~~~~~~ 757 (808)
+|++|.+.++++.+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 566666666555543
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.03 E-value=0.00012 Score=62.20 Aligned_cols=97 Identities=16% Similarity=0.082 Sum_probs=80.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD----KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK----ADTY 731 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~ 731 (808)
++..++..+.+.|++++|.+.|+++.+. .|+ ...+..++.++.+.|++++|...++++... .|+ ...+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHH
Confidence 4566778888999999999999999874 333 246677999999999999999999998873 333 5678
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 732 NILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 732 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
..++.++.+.|++++|...++++++..|.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 88899999999999999999999988665
No 155
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.02 E-value=0.017 Score=56.53 Aligned_cols=282 Identities=13% Similarity=0.131 Sum_probs=145.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHH
Q 046719 463 GHFDKCFQILEEMENSGMKPNVVSYGSLINW--LCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFK 540 (808)
Q Consensus 463 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 540 (808)
|+-..|.++-.+-.+. +..|......++.+ -.-.|+++.|.+-|+.|... .+.-..-...|.-...+.|..+.|..
T Consensus 98 Gda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 98 GDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred CchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 4444454444433221 22333333333322 23456666666666666542 11111112333333445677777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHH---HcCCCHHHHHHHHHH
Q 046719 541 FFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSG-LNPDVIT--YNSLISGY---SSLGSSQKCLELYEN 614 (808)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~--~~~l~~~~---~~~g~~~~A~~~~~~ 614 (808)
+-++.-..- +.-...+...+...|..|+++.|+++++.-.... +.+++.- --.|+.+- .-..+...|...-.+
T Consensus 176 yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~ 254 (531)
T COG3898 176 YAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE 254 (531)
T ss_pred HHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 766665541 2234556667777777777777777777655421 2333311 11111111 112234555555444
Q ss_pred HHHCCCCcCHH-hHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCC
Q 046719 615 MKKLGIKPSLR-TYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQ-GIRP 691 (808)
Q Consensus 615 ~~~~~~~p~~~-~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p 691 (808)
..+ +.|+.. .-.....++.+.| +.++..+++.+.+....|++ + .+..+.+.|+. ++.-+++.... .++|
T Consensus 255 a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdt--a~dRlkRa~~L~slk~ 326 (531)
T COG3898 255 ANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDT--ALDRLKRAKKLESLKP 326 (531)
T ss_pred Hhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCc--HHHHHHHHHHHHhcCc
Confidence 443 345532 2223344566666 77777777777775444443 2 22234455543 22222222110 1445
Q ss_pred CH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CChhHHHHHHHHHHHC
Q 046719 692 DK-MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNL-KDFGGAYIWYREMFEN 757 (808)
Q Consensus 692 d~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 757 (808)
|. .+...+..+-...|++..|..-.+.+.+ ..|....|..|.+.-... ||-.++..++-+.++.
T Consensus 327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 327 NNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 43 3556667777777777777777666665 567777777777665543 7777777777777764
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.99 E-value=0.00014 Score=66.36 Aligned_cols=115 Identities=13% Similarity=0.038 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD--KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILV 735 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 735 (808)
..+..++..+...|++++|...|++.++....+. ...+..++..+.+.|++++|...++++++ ..| +...+..++
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHH
Confidence 3455555556666666666666666655321111 23455566666666666666666666655 233 344445555
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 046719 736 KGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 736 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 796 (808)
.++...|+...+..-++++.. .+++|...++++...+|++
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCchh
Confidence 555555554444333333221 1466777777777766665
No 157
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.98 E-value=0.0018 Score=56.29 Aligned_cols=134 Identities=13% Similarity=0.136 Sum_probs=107.4
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC---CHHH
Q 046719 654 LVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP---KADT 730 (808)
Q Consensus 654 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~ 730 (808)
..|+...-..|..++.+.|++.||..+|++...--+.-|......+..+....+++..|...++++.+.. | .+.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCc
Confidence 3566666777888999999999999999999874344567788899999999999999999999988743 4 2455
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
...++..+...|++.+|...|+.++..- |++......+..+.++|+..||..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6678889999999999999999998764 5566666677889999998888776665554
No 158
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.93 E-value=0.03 Score=59.03 Aligned_cols=205 Identities=11% Similarity=0.080 Sum_probs=114.0
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 046719 376 VPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENH-GLAP--------NCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVS 446 (808)
Q Consensus 376 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 446 (808)
.|....|..+.....+.-.++-|...|-+..+. |++. +...-.+-+.+ --|++++|++++-+|.++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 356677887777777777777777666554332 2210 00000111112 2378888888888776552
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHH
Q 046719 447 PNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGM--KPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNM 524 (808)
Q Consensus 447 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ 524 (808)
..+..+.+.|+|-...++++.-- .+. ..-...++.+...+.....|++|.+.+..-... ..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 23456667777766666654311 000 011346777777777777777777777654321 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 046719 525 LIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGS 604 (808)
Q Consensus 525 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 604 (808)
.+.++....++++-..+... ++.+....-.+.+++...|.-++|.+.+-+-. .|. ..+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHH
Confidence 45555555555544433333 23355556667777777777777776654332 111 23445666677
Q ss_pred HHHHHHHHHHH
Q 046719 605 SQKCLELYENM 615 (808)
Q Consensus 605 ~~~A~~~~~~~ 615 (808)
+.+|.++-+..
T Consensus 894 W~~avelaq~~ 904 (1189)
T KOG2041|consen 894 WGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHhc
Confidence 77777766543
No 159
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.93 E-value=0.016 Score=60.91 Aligned_cols=59 Identities=19% Similarity=0.358 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVK-GLIPKADTYNILVKGYCNLKDFGGAYIWYRE 753 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 753 (808)
.+-.|+.-....|..+.|.+..-.+.+. ++-|....|..++-+.|....+...-+.+-+
T Consensus 1023 HFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmk 1082 (1189)
T KOG2041|consen 1023 HFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMK 1082 (1189)
T ss_pred HHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 4445566666778888887765555432 2455567777666666655555444443333
No 160
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.93 E-value=0.00039 Score=70.92 Aligned_cols=123 Identities=19% Similarity=0.219 Sum_probs=88.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 046719 592 YNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAE 670 (808)
Q Consensus 592 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 670 (808)
-..|+..+...++++.|+.+|+++.+.. |+. ...+...+...+ -.+|.+++++.++.. +.+...+..-+..|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3455666667788888888888888653 443 334555666666 677788887777643 4466677777777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 671 HGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 671 ~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
.++++.|+++.+++.+ ..|+.. +|..|+.+|.+.|+++.|+-.++.+.-
T Consensus 247 k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8888888888888887 466555 888888888888888888887777653
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.93 E-value=0.00022 Score=73.23 Aligned_cols=92 Identities=10% Similarity=0.181 Sum_probs=68.7
Q ss_pred HHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 046719 632 SGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKL 709 (808)
Q Consensus 632 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~ 709 (808)
..+...| +++|.+.|+++++.+ +.+...|..+..+|.+.|++++|+..++++++ +.| +...|..++.+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCCH
Confidence 3345556 888888888888764 44567777778888888888888888888887 455 444777888888888888
Q ss_pred hHHHHHHHHHHHCCCCCCH
Q 046719 710 SEVKELVNDMKVKGLIPKA 728 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~~p~~ 728 (808)
++|+..++++++ +.|+.
T Consensus 87 ~eA~~~~~~al~--l~P~~ 103 (356)
T PLN03088 87 QTAKAALEKGAS--LAPGD 103 (356)
T ss_pred HHHHHHHHHHHH--hCCCC
Confidence 888888888877 55643
No 162
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.0099 Score=58.69 Aligned_cols=88 Identities=16% Similarity=0.136 Sum_probs=63.9
Q ss_pred HHHcC-HHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC
Q 046719 634 CIREG-IVAVEKLFNEMLQIN---LVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGK 708 (808)
Q Consensus 634 ~~~~~-~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~ 708 (808)
..+.| +..|.+.|.+.+..+ ..++...|.....+..+.|+.++|+.--++..+ +.|... .|..-+.++...++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHH
Confidence 34566 777888887777632 334556677777788889999999999888877 444433 45555677778888
Q ss_pred HhHHHHHHHHHHHCC
Q 046719 709 LSEVKELVNDMKVKG 723 (808)
Q Consensus 709 ~~~A~~~~~~~~~~g 723 (808)
|++|.+-++++.+..
T Consensus 337 ~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999987643
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.90 E-value=2.4e-05 Score=61.31 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=61.4
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHH
Q 046719 671 HGDVQKALVLHSEMVDQGI-RPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAY 748 (808)
Q Consensus 671 ~g~~~~A~~~~~~~~~~g~-~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 748 (808)
.|++++|+.+++++.+..- .|+...+..++.++.+.|++++|+.++++ .+ ..| +......++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5889999999999998521 12344566689999999999999999988 33 233 3455667799999999999999
Q ss_pred HHHHHH
Q 046719 749 IWYREM 754 (808)
Q Consensus 749 ~~~~~~ 754 (808)
+.++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999874
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.88 E-value=0.0002 Score=57.84 Aligned_cols=96 Identities=21% Similarity=0.177 Sum_probs=77.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 046719 661 YNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCN 740 (808)
Q Consensus 661 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 740 (808)
+..++..+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.+++..+.. ..+..++..++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 456677788899999999999999884 23344678888999999999999999999988742 2345678888899999
Q ss_pred cCChhHHHHHHHHHHHCC
Q 046719 741 LKDFGGAYIWYREMFENG 758 (808)
Q Consensus 741 ~g~~~~A~~~~~~~~~~~ 758 (808)
.|++++|...++++.+.+
T Consensus 81 ~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 81 LGKYEEALEAYEKALELD 98 (100)
T ss_pred HHhHHHHHHHHHHHHccC
Confidence 999999999999987654
No 165
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.87 E-value=0.00026 Score=68.49 Aligned_cols=101 Identities=11% Similarity=0.028 Sum_probs=65.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC--CCHHHHHHH
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVKGLIPK----ADTYNILVKGYCNLKDFGGAYIWYREMFENGFI--PSFCIYNEL 769 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l 769 (808)
|........+.|++++|+..|+.+++. .|+ +..+..++.+|...|++++|...|+++++..|. ..+..+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 433333345567777777777777663 343 245667777777777777777777777764332 134566666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 770 TNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 770 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+.++...|+.++|.+.++++++..|+.-.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 77777777777777777777777776554
No 166
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.84 E-value=2.9e-05 Score=48.81 Aligned_cols=33 Identities=42% Similarity=0.845 Sum_probs=16.8
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC
Q 046719 206 VYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPT 238 (808)
Q Consensus 206 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 238 (808)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555554444
No 167
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.83 E-value=6.8e-05 Score=56.95 Aligned_cols=67 Identities=15% Similarity=0.002 Sum_probs=53.1
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCchhhh
Q 046719 735 VKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWTNEDQ 802 (808)
Q Consensus 735 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 802 (808)
...|.+.+++++|.+.++++++.+|. ++..+...+.++.+.|++++|...++++++..|++.....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 35677788888888888888888777 78888888888888888888888888888888876664433
No 168
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.81 E-value=2.7e-05 Score=48.92 Aligned_cols=33 Identities=48% Similarity=0.886 Sum_probs=15.8
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC
Q 046719 276 MFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPD 308 (808)
Q Consensus 276 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 308 (808)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
No 169
>PRK15331 chaperone protein SicA; Provisional
Probab=97.81 E-value=0.00077 Score=58.21 Aligned_cols=92 Identities=13% Similarity=-0.019 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG 777 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 777 (808)
..+.-+...|++++|..+|.-+.-.+ .-|..-|..|+.++-..+++++|+..|..+...++. |+......+.++...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhC
Confidence 44555566667777777766665522 124555556666666666777777776666665544 5666666667777777
Q ss_pred ChhHHHHHHHHHHH
Q 046719 778 KLKEAQILCSEISI 791 (808)
Q Consensus 778 ~~~~A~~~~~~~~~ 791 (808)
+.++|+..|+.++.
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 77777776666665
No 170
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.79 E-value=0.046 Score=53.72 Aligned_cols=295 Identities=16% Similarity=0.158 Sum_probs=191.7
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHH
Q 046719 487 YGSLINWLC--KDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDG--SCTMGRIKDAFKFFDEMVKREMGPTLVT--FNAL 560 (808)
Q Consensus 487 ~~~ll~~~~--~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l 560 (808)
|..|-.++. -.|+-..|.++-.+..+. +..|......++.+ ..-.|+++.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 344444443 356777777766655432 33355555555544 44589999999999999863 22221 1222
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCcCHH--hHHHHHHH--HH
Q 046719 561 INGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKL-GIKPSLR--TYHPLLSG--CI 635 (808)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~--~~~~l~~~--~~ 635 (808)
.-.-.+.|..+.|..+-+.....- +--...+...+...+..|+++.|+++.+.-... -+.++.. .-..|+.+ ..
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 223346788999999888887642 223467888999999999999999999877654 2334422 22233332 22
Q ss_pred HcC--HHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 046719 636 REG--IVAVEKLFNEMLQINLVPDLLV-YNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEV 712 (808)
Q Consensus 636 ~~~--~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A 712 (808)
..+ ...|...-.+..+ +.||..- -..-..++.+.|+..++-++++.+.+. .|...+ .+...+.+.|+. +
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~i--a~lY~~ar~gdt--a 311 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDI--ALLYVRARSGDT--A 311 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHH--HHHHHHhcCCCc--H
Confidence 222 4555555555555 4566432 233457889999999999999999995 444433 234445566653 3
Q ss_pred HHHHHH---HHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHH
Q 046719 713 KELVND---MKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQE-GKLKEAQILCS 787 (808)
Q Consensus 713 ~~~~~~---~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~A~~~~~ 787 (808)
+.-+++ +.. +.|| ......+..+....|++..|..--+.+... .|....|..|++.-... |+..++..++.
T Consensus 312 ~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 312 LDRLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred HHHHHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 333333 333 5564 566778888888999999998877777654 56777888888776544 99999999999
Q ss_pred HHHHcCCC-CCc
Q 046719 788 EISIVGKD-AWT 798 (808)
Q Consensus 788 ~~~~~~~~-~~~ 798 (808)
+..+.+.+ .|+
T Consensus 388 qav~APrdPaW~ 399 (531)
T COG3898 388 QAVKAPRDPAWT 399 (531)
T ss_pred HHhcCCCCCccc
Confidence 99887644 444
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.78 E-value=2.9e-05 Score=57.98 Aligned_cols=57 Identities=14% Similarity=0.058 Sum_probs=41.7
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 046719 739 CNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 739 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 796 (808)
.+.|++++|+.+|+++++..|. +..++..++.+|.+.|++++|..++++++...|++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 3567777777777777777666 77777777777777777777777777777777764
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.78 E-value=0.00076 Score=61.51 Aligned_cols=128 Identities=18% Similarity=0.216 Sum_probs=91.6
Q ss_pred HHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 046719 624 LRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPD--LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-KMTYNSL 699 (808)
Q Consensus 624 ~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l 699 (808)
...+..+...+...| +++|...|++.++....+. ...+..++.++.+.|++++|+..+++.++. .|+ ...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 345666667788888 9999999999987543332 467888899999999999999999999984 554 4577788
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 700 IFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGK 778 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 778 (808)
+..+...|+...+..-+..+.. .+++|.+.++++.+.++. + +..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p~-~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAPN-N---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCch-h---HHHHHHHHHhcCc
Confidence 8999998887776655444332 267778888888766543 2 4444444444443
No 173
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.77 E-value=0.057 Score=54.26 Aligned_cols=464 Identities=15% Similarity=0.150 Sum_probs=253.3
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCH------hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHH--HH
Q 046719 284 FCKAKRMEEAKSVCKEMEAHGFDPDG------FTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNA--LC 355 (808)
Q Consensus 284 ~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 355 (808)
+-+.+++.+|..+|.+..+.. ..++ ..-+.++++|... +.+.....+.+..+... ...|-.|..+ +.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~---~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG---KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC---CchHHHHHHHHHHH
Confidence 347899999999999987642 2222 2344566777644 45555555555544321 2344445444 35
Q ss_pred hcCChHHHHHHHHHHHHC--CCCC------------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHH
Q 046719 356 KEGKVEIAEEIVGKEIEN--GLVP------------DEVMFNTIVSGYCRTGDLNRAMLAIQQMENHG----LAPNCITF 417 (808)
Q Consensus 356 ~~g~~~~a~~~~~~~~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~ 417 (808)
+.+.+.+|.+.+..-..+ +..| |-..=+..+..+...|++.++..+++++...= ..-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 789999999988876654 2222 12222556778889999999999999887643 34688889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 046719 418 NTLIDKFCELGEMDKAEEWVKRMLEK---GVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWL 494 (808)
Q Consensus 418 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 494 (808)
+.++-.+.+. .|-++.+. .+-|+ |--++..|.+.=+.-++ ..-..+-|.......++...
T Consensus 171 d~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~------~~Y~k~~peeeL~s~imqhl 233 (549)
T PF07079_consen 171 DRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQ------RPYEKFIPEEELFSTIMQHL 233 (549)
T ss_pred HHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHHHHHHH
Confidence 8877666542 33333221 12222 22333344332111111 00001223333333333322
Q ss_pred Hhc--CCHHHHHHHHHHHHhCCCCcchh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhc
Q 046719 495 CKD--CKLLEAEIVLKDMENRGVLPNAQ-IYNMLIDGSCTMGRIKDAFKFFDEMVKREMG----PTLVTFNALINGLCKK 567 (808)
Q Consensus 495 ~~~--~~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~ 567 (808)
.-. .+..--.++++.....-+.|+.. ....+...+.. +.+++..+.+.+....+. .-..++..++....+.
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~ 311 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ 311 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 11111122222222222444432 23344444443 445555554444332111 1244566777777788
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHH----cCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH---H
Q 046719 568 GRVMEAEDMLPQITSSGLNPDVIT-------YNSLISGYS----SLGSSQKCLELYENMKKLGIKPSLRTYHPLLS---G 633 (808)
Q Consensus 568 g~~~~A~~~~~~~~~~~~~~~~~~-------~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~---~ 633 (808)
++...|.+.+.-+..- .|+... -..+.+..+ ..-+...-+-+|+......+.- ......|+. -
T Consensus 312 ~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~ 388 (549)
T PF07079_consen 312 VQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKH 388 (549)
T ss_pred HhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHH
Confidence 8888888777766653 333221 112222222 1223344455666665543221 222223333 2
Q ss_pred HHHcC--HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHc---cCCHHHHHHHHHHHHHCCCCCCH----HHHHHHH
Q 046719 634 CIREG--IVAVEKLFNEMLQINLVPDLLVYNALI----HCYAE---HGDVQKALVLHSEMVDQGIRPDK----MTYNSLI 700 (808)
Q Consensus 634 ~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~g~~pd~----~~~~~l~ 700 (808)
+.+.| -+.+.++++..++.. +-|...-|.+. ..|.. ...+.+-+++-+-+.+.|+.|-. ..-|.|.
T Consensus 389 lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 56666 788899998888742 34554444332 22221 12344444454555567877732 3455555
Q ss_pred HH--HHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 701 FG--HLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGK 778 (808)
Q Consensus 701 ~~--~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 778 (808)
.+ +..+|++.++.-+-.-+.+ +.|++.+|..++-++....++++|..++.+. +|+...+.. +
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds---------k 531 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS---------K 531 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH---------H
Confidence 44 6789999999988888877 8999999999999999999999999999886 445544332 3
Q ss_pred hhHHHHHHHHHHH
Q 046719 779 LKEAQILCSEISI 791 (808)
Q Consensus 779 ~~~A~~~~~~~~~ 791 (808)
.++|..++.+-+.
T Consensus 532 vqKAl~lCqKh~~ 544 (549)
T PF07079_consen 532 VQKALALCQKHLP 544 (549)
T ss_pred HHHHHHHHHHhhh
Confidence 4566666655443
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.75 E-value=0.0021 Score=63.95 Aligned_cols=142 Identities=19% Similarity=0.223 Sum_probs=77.1
Q ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-----H
Q 046719 661 YNALIHCYAEH-GDVQKALVLHSEMVDQ----GIRPD--KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-----A 728 (808)
Q Consensus 661 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~----g~~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~ 728 (808)
+..+...|... |++++|++.|+++.+. | .+. ...+..++..+.+.|++++|+++|++....-...+ .
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 34455566666 7788888888777653 2 111 12456677778888888888888887765422211 1
Q ss_pred -HHHHHHHHHHHccCChhHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCchhh
Q 046719 729 -DTYNILVKGYCNLKDFGGAYIWYREMFENG--FIPS--FCIYNELTNGLKQ--EGKLKEAQILCSEISIVGKDAWTNED 801 (808)
Q Consensus 729 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~--~~~~~~l~~~l~~--~g~~~~A~~~~~~~~~~~~~~~~~~~ 801 (808)
..+...+-++...||...|.+.+++..... +..+ ......|+.++-. ...+.+|..-|+.+.+ .++|-...
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~--ld~w~~~~ 273 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR--LDNWKTKM 273 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-----HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc--cHHHHHHH
Confidence 123334445666788888888888876543 2222 3344455555533 2355566666666533 56666555
Q ss_pred hHhh
Q 046719 802 QSAV 805 (808)
Q Consensus 802 ~~~~ 805 (808)
+-.+
T Consensus 274 l~~~ 277 (282)
T PF14938_consen 274 LLKI 277 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 175
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0014 Score=62.44 Aligned_cols=104 Identities=12% Similarity=-0.032 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccC---ChhHHHHHHHHHHHCCCCCCHHHHH
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLK---DFGGAYIWYREMFENGFIPSFCIYN 767 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~ 767 (808)
|...|..|+.+|...|++..|...|.+..+ +.| |+..+..++.++..+. +..++..+++++++.++. |.....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 445666666666666666666666666665 333 4555555555554332 345666666666666655 666666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 768 ELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 768 ~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.|+..+...|++++|...++.|++..|.+.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 6666666666666666666666666666555
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.75 E-value=0.0014 Score=70.31 Aligned_cols=66 Identities=17% Similarity=0.035 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 728 ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 728 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
+..+..++-.+...|++++|...++++++.+ |+...|..++..+...|+.++|...++++...+|.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3444444444444455555555555555443 23445555555555555555555555555555544
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.74 E-value=0.00089 Score=55.60 Aligned_cols=90 Identities=19% Similarity=0.196 Sum_probs=50.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 046719 664 LIHCYAEHGDVQKALVLHSEMVDQGIRPDK--MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK----ADTYNILVKG 737 (808)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~ 737 (808)
+..++-..|+.++|+.+|++.++.|+.... ..+..++..+...|++++|..++++.... .|+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 445556666666666666666666554332 24555666666666666666666666542 122 2222333445
Q ss_pred HHccCChhHHHHHHHHHH
Q 046719 738 YCNLKDFGGAYIWYREMF 755 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~ 755 (808)
+...|+.++|+.++-..+
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 556666666666665554
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.73 E-value=0.00081 Score=61.11 Aligned_cols=78 Identities=15% Similarity=0.054 Sum_probs=35.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD--KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVK 736 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 736 (808)
.|..++..+...|++++|+..|++.+.....|. ..++..++..+...|++++|+..++++.+ +.| ...++..++.
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~la~ 114 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence 344444444455555555555555544211111 12444555555555555555555555544 222 2333444444
Q ss_pred HHH
Q 046719 737 GYC 739 (808)
Q Consensus 737 ~~~ 739 (808)
++.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
No 179
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.70 E-value=6.1e-05 Score=46.85 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=13.4
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCC
Q 046719 206 VYNVLISGFCKEKKIRDAEKLFDEMCQRKLV 236 (808)
Q Consensus 206 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 236 (808)
+|+.++.+|++.|+++.|.++|++|.+.|+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.69 E-value=0.00088 Score=60.89 Aligned_cols=104 Identities=12% Similarity=0.050 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 694 MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP--KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTN 771 (808)
Q Consensus 694 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 771 (808)
..|..++..+...|++++|...+++++.....+ ...++..++.++...|++++|+..++++++..+. ....+..++.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 356677777777777777777777776532122 1246677777777777777777777777766444 4555666666
Q ss_pred HHH-------hcCChh-------HHHHHHHHHHHcCCCCCc
Q 046719 772 GLK-------QEGKLK-------EAQILCSEISIVGKDAWT 798 (808)
Q Consensus 772 ~l~-------~~g~~~-------~A~~~~~~~~~~~~~~~~ 798 (808)
.+. +.|+++ +|..++++.....|.+.+
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 666 666666 444444445555554443
No 181
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.68 E-value=0.077 Score=53.19 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=79.9
Q ss_pred HhHHHHHHHHHHcC-HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHH
Q 046719 625 RTYHPLLSGCIREG-IVAVEKLFNEMLQIN-LVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMT-YNSLIF 701 (808)
Q Consensus 625 ~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~-~~~l~~ 701 (808)
.+|...++...+.. ++.|.++|.++.+.+ ..+++.++++++..++ .|+..-|.++|+.=... -||... -+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 44555555544444 777777777777766 4566667777776555 56667777777665442 334443 234455
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 702 GHLREGKLSEVKELVNDMKVKGLIPK--ADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 702 ~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
.+..-++-+.|..+|+..+++ +..+ ...|..++.--..-|+...+..+=+++.+.-|+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 556667777777777755433 2333 345666666666677777777766666665444
No 182
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.68 E-value=6e-05 Score=46.88 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=15.1
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 046719 276 MFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDP 307 (808)
Q Consensus 276 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 307 (808)
+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 183
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.65 E-value=0.0012 Score=64.52 Aligned_cols=134 Identities=19% Similarity=0.135 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHH----HCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHH----HCCC-CCCH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMV----DQGIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMK----VKGL-IPKA 728 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~g~-~p~~ 728 (808)
..|..|.+.|.-.|+++.|+..-+.-+ +.|-+.. ...+..|++++.-.|+++.|.+.++... +.|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456667777777888888887655432 3332221 2357788888888899999998888753 3331 1234
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFEN-----GFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
.....|++.|.-..++++|+.+..+=++. +..-....+..|+.++...|..++|+.+.+.-+..
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 56678888888888899998887764421 11224566777888888888888888888776653
No 184
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.59 E-value=0.0015 Score=67.07 Aligned_cols=121 Identities=14% Similarity=0.116 Sum_probs=80.2
Q ss_pred CChhhHHHHHHHHHccCCHhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHH
Q 046719 202 PNVFVYNVLISGFCKEKKIRDAEKLFDEMCQR--KLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNS 279 (808)
Q Consensus 202 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 279 (808)
-+......+++.+....+++++..++-+.... ...--..|..++|+.|.+.|..+++..++..=..-|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 35555666677666666777777777766553 1112233556777777777777777777777777777777777777
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhC
Q 046719 280 LLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKC 322 (808)
Q Consensus 280 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 322 (808)
|+..+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777776666555555555544444443
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.58 E-value=0.0059 Score=65.67 Aligned_cols=84 Identities=20% Similarity=0.022 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 046719 675 QKALVLHSEMVDQG-IRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYRE 753 (808)
Q Consensus 675 ~~A~~~~~~~~~~g-~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 753 (808)
..+.+..++..... .+.+...|..++..+...|++++|...++++++ +.|+...|..++..+...|+.++|...+++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444443321 122344666666666667777777777777777 446666777777777777777777777777
Q ss_pred HHHCCCC
Q 046719 754 MFENGFI 760 (808)
Q Consensus 754 ~~~~~~~ 760 (808)
++..+|.
T Consensus 479 A~~L~P~ 485 (517)
T PRK10153 479 AFNLRPG 485 (517)
T ss_pred HHhcCCC
Confidence 7776554
No 186
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.57 E-value=0.00031 Score=52.56 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccC-ChhHHHHHHHHHHHCC
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLK-DFGGAYIWYREMFENG 758 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 758 (808)
+..+|..++..+...|++++|+..|+++++ +.| +...|..++.++...| ++++|++.++++++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 345667777777777777777777777776 345 3556677777777777 5777777777777654
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.57 E-value=0.00027 Score=52.05 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=38.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 699 LIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 699 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
++..+...|++++|...|+++++. .| +...+..++.++...|++++|..+|+++++..|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 455666777777777777777663 34 456666777777777777777777777766544
No 188
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.55 E-value=0.0065 Score=60.47 Aligned_cols=103 Identities=14% Similarity=0.034 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhc-CCHhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-----C
Q 046719 695 TYNSLIFGHLRE-GKLSEVKELVNDMKVK----GLIPK--ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP-----S 762 (808)
Q Consensus 695 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~ 762 (808)
.+..++..|... |++++|+++|+++.+. | .+. ...+..++..+.+.|++++|+++|++........ +
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 344566677777 8999999999998642 2 121 3456788889999999999999999988753321 2
Q ss_pred H-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 763 F-CIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 763 ~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
. ..+...+-++...|+...|.+.+++.....|....
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 2 23445667888899999999999999988776554
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.54 E-value=0.033 Score=48.73 Aligned_cols=132 Identities=10% Similarity=0.058 Sum_probs=99.7
Q ss_pred CcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 046719 621 KPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD---KMTY 696 (808)
Q Consensus 621 ~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd---~~~~ 696 (808)
.|+...-..|..++...| ..+|...|.+...--..-|..+.-.+.++....+++.+|..+++.+.+.. |+ ..+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 455555566677777777 77777777777653345577888888889899999999999999998852 32 2245
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 697 NSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 697 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
..++..+...|++.+|...|+.+.. .-|++..-......+.++|+.++|..-+....+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 5778889999999999999999988 567776666667777889988888776666554
No 190
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.50 E-value=0.00014 Score=44.06 Aligned_cols=28 Identities=50% Similarity=0.905 Sum_probs=13.4
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 046719 206 VYNVLISGFCKEKKIRDAEKLFDEMCQR 233 (808)
Q Consensus 206 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 233 (808)
+||.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0047 Score=58.95 Aligned_cols=102 Identities=13% Similarity=0.110 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHCCCCC-CHH
Q 046719 655 VPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREG---KLSEVKELVNDMKVKGLIP-KAD 729 (808)
Q Consensus 655 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p-~~~ 729 (808)
+.|...|..|..+|...|+++.|..-|.+..+ +.| +...+..++.++..+. ...++..++++++. ..| |..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHH
Confidence 67889999999999999999999999999998 444 4557777777766543 36789999999998 456 567
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 730 TYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 730 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
....|+..+...|++.+|...|+.|++..+.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 7888999999999999999999999987654
No 192
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.47 E-value=0.0024 Score=65.54 Aligned_cols=119 Identities=13% Similarity=0.160 Sum_probs=64.9
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHHhC--CCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 046719 308 DGFTYSMLFDGYSKCGDGEGVMALYEELSGR--GFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTI 385 (808)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 385 (808)
.......+++.+....+++.+..++.+.... ....-..+..++++.|.+.|..+.++.++..-...|+-||..++|.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444445555555555555555555554433 12223344455666666666666666666666666666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046719 386 VSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCE 426 (808)
Q Consensus 386 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 426 (808)
++.+.+.|++..|.++...|...+...+..|+..-+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666665555444444444444444433
No 193
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=0.0023 Score=60.17 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=78.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKVKGLIP--KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP--SFCIYNELTNGL 773 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~l 773 (808)
..+..+.+.|++.+|...|...++..... .+..+..|+.++..+|++++|..+|..+.+.-|+- -++.+..|+.++
T Consensus 146 ~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~ 225 (262)
T COG1729 146 NAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSL 225 (262)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 33445566778999999998888753111 24567788999999999999999999988854432 357888999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 774 KQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 774 ~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.+.|+.++|...++++++.-|+..+
T Consensus 226 ~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 226 GRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999888777
No 194
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0024 Score=63.15 Aligned_cols=128 Identities=10% Similarity=-0.028 Sum_probs=102.4
Q ss_pred HHHHccCCHHHHHHHHHHHHHC-----CCCC---------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHH
Q 046719 666 HCYAEHGDVQKALVLHSEMVDQ-----GIRP---------DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTY 731 (808)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~~~~~-----g~~p---------d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 731 (808)
+.|.+.|++..|...|++++.. +.++ -..+++.|+.++.+.+++.+|++..++.++.+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4677888888888888886642 1111 12357889999999999999999999999853 4578888
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHHHcCCC
Q 046719 732 NILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEA-QILCSEISIVGKD 795 (808)
Q Consensus 732 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A-~~~~~~~~~~~~~ 795 (808)
.--+.+|...|+++.|+..|+++++..|. |..+-..|..+-.+..+.++. .++|..|..+...
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 89999999999999999999999999877 788888888877666665555 8889999876653
No 195
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.45 E-value=0.00015 Score=43.84 Aligned_cols=27 Identities=44% Similarity=0.811 Sum_probs=11.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 277 FNSLLGGFCKAKRMEEAKSVCKEMEAH 303 (808)
Q Consensus 277 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 303 (808)
|+.++++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444433
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.45 E-value=0.0069 Score=50.34 Aligned_cols=95 Identities=21% Similarity=0.096 Sum_probs=76.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 046719 697 NSLIFGHLREGKLSEVKELVNDMKVKGLIPK--ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP--SFCIYNELTNG 772 (808)
Q Consensus 697 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 772 (808)
..+++++-..|+.++|+.++++....|+... ...+..++.++...|++++|..++++.....|.+ +......++.+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 4678888899999999999999999887654 4567789999999999999999999998764432 23444556778
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 046719 773 LKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 773 l~~~g~~~~A~~~~~~~~~ 791 (808)
+...|+.+||..++-..+-
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999877664
No 197
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.38 E-value=0.0046 Score=61.22 Aligned_cols=129 Identities=14% Similarity=0.113 Sum_probs=76.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 046719 486 SYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDG-SCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGL 564 (808)
Q Consensus 486 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 564 (808)
+|..+++...+.+..+.|..+|.+.++.+ ..+..+|...... +...++.+.|.++|+..++. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45566666666666666777776666432 1234444444444 22245555577777777765 455666677777777
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 046719 565 CKKGRVMEAEDMLPQITSSGLNPDV---ITYNSLISGYSSLGSSQKCLELYENMKK 617 (808)
Q Consensus 565 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 617 (808)
...|+.+.|+.+|++.+.. +.++. ..|...+..-.+.|+.+.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777654 22222 3677777777777777777777777665
No 198
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.37 E-value=0.0032 Score=62.31 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHc-cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046719 172 YGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCK-EKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYC 250 (808)
Q Consensus 172 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 250 (808)
|-..++..-+.+..+.|+.+|.++.+.+. .+..+|-.....-.. .++.+.|.++|+...+. +..+...|...++.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 44444444444445555555555543321 122222222222112 33444455555555443 2234444555555555
Q ss_pred hcCChhHHHHHHHHHHhCCCCc---CHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 251 KVGEFEKVSALRERMKRDKVEV---SLVMFNSLLGGFCKAKRMEEAKSVCKEMEA 302 (808)
Q Consensus 251 ~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 302 (808)
+.|+.+.|..+|++.... +.+ ....|...+..=.+.|+++.+..+.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555433 111 123555555555555555555555555554
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.37 E-value=0.0028 Score=61.39 Aligned_cols=98 Identities=19% Similarity=0.125 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK----MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK----ADT 730 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~ 730 (808)
..|...+..+.+.|++++|+..|+.+++. .|+. ..+..++..|...|++++|...|+++.+. .|+ ...
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dA 219 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHH
Confidence 45555555556679999999999999984 4543 36778999999999999999999999863 333 566
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+..++.++...|++++|..+|+++++..|.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 777888898999999999999999987655
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.34 E-value=0.00048 Score=51.31 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=29.0
Q ss_pred hcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 705 REGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 705 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
+.|++++|+++++++.+ ..| +...+..++.+|.+.|++++|..+++++....
T Consensus 3 ~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45556666666666555 233 45555556666666666666666666665543
No 201
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.34 E-value=0.099 Score=50.38 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046719 384 TIVSGYCRTGDLNRAMLAIQQMENHG--LAPNCITFNTLIDKFCELGEMDKAEEWVKRM 440 (808)
Q Consensus 384 ~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 440 (808)
.+.+.|.+.|.+..|..-++.+.+.= .+........++.+|...|..++|......+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34555666676666666666666531 1222334455566666666666666655444
No 202
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.30 E-value=0.068 Score=51.49 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=34.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 046719 385 IVSGYCRTGDLNRAMLAIQQMENHGLAPNCITF---NTLIDKFCELGEMDKAEEWVKRMLEK 443 (808)
Q Consensus 385 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~ 443 (808)
....+.+.|++++|.+.|+.+....+.. .... -.++.++.+.+++++|...+++.++.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444456677777777777776643322 2221 34455666777777777777776665
No 203
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.30 E-value=0.0033 Score=50.01 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CcCHhhHHHHHHHHH
Q 046719 139 VLLECLVRCNQYDRALDLFDEIVCMGF-RPDKFTYGKAVQAAV 180 (808)
Q Consensus 139 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 180 (808)
..|..+...+++.....+|+.+.+.|+ .|++.+|+.++.+.+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~ 72 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIA 72 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 344444444555555555555555555 455555555555443
No 204
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.28 E-value=0.0036 Score=49.80 Aligned_cols=74 Identities=18% Similarity=0.268 Sum_probs=44.6
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCcCHhhHHHHHH
Q 046719 107 SILSSAKLPSEALQLYASTKADGT-RLSLDSINVLLECLVRCN--------QYDRALDLFDEIVCMGFRPDKFTYGKAVQ 177 (808)
Q Consensus 107 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 177 (808)
..+...+++...-.+|..+++.|+ .|+..+|+.++++..+.. +.-..+.+|+.|+..+.+|+..+|+.++.
T Consensus 33 ~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~ 112 (120)
T PF08579_consen 33 NSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLG 112 (120)
T ss_pred HHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 334555777777777777777777 677777777777766552 12334445555555555555555555555
Q ss_pred HHH
Q 046719 178 AAV 180 (808)
Q Consensus 178 ~~~ 180 (808)
.+.
T Consensus 113 ~Ll 115 (120)
T PF08579_consen 113 SLL 115 (120)
T ss_pred HHH
Confidence 443
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.052 Score=50.30 Aligned_cols=130 Identities=15% Similarity=0.237 Sum_probs=69.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHH-----
Q 046719 137 INVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLI----- 211 (808)
Q Consensus 137 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~----- 211 (808)
-+.+++++.-.|.|.-...++.+.++..+..++.....+.+.-.+.||.+.|...|+++.+..-..|....+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 445555555566666666666666665555556666666666666666666666666555432223333333322
Q ss_pred HHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046719 212 SGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKR 267 (808)
Q Consensus 212 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 267 (808)
..|.-++++.+|...|++++..+.. |+..-|.-.-+..-.|+..+|....+.|+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2333455566666666665554322 444444433333344556666666666554
No 206
>PRK11906 transcriptional regulator; Provisional
Probab=97.21 E-value=0.0091 Score=60.87 Aligned_cols=150 Identities=15% Similarity=0.026 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHc---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 639 IVAVEKLFNEMLQI-NLVPD-LLVYNALIHCYAE---------HGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREG 707 (808)
Q Consensus 639 ~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g 707 (808)
.+.|..+|.+.+.. .+.|+ ...|..+..++.. .....+|.++.++.++.+ +-|......++.++...|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 67888899999832 24555 4566666555432 234677888889998853 336778888888888889
Q ss_pred CHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCChhHHHHH
Q 046719 708 KLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTN-GLKQEGKLKEAQIL 785 (808)
Q Consensus 708 ~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~g~~~~A~~~ 785 (808)
+++.|...|+++.. +.|| ..+|...+..+.-.|+.++|.+.++++++..|..-......+.- .|+.. ..++|+++
T Consensus 353 ~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 99999999999988 6776 67788888888899999999999999998876644455555544 55555 67888888
Q ss_pred HHHHHHc
Q 046719 786 CSEISIV 792 (808)
Q Consensus 786 ~~~~~~~ 792 (808)
+-+-.+.
T Consensus 430 ~~~~~~~ 436 (458)
T PRK11906 430 YYKETES 436 (458)
T ss_pred Hhhcccc
Confidence 7665443
No 207
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.19 E-value=0.0047 Score=55.83 Aligned_cols=50 Identities=28% Similarity=0.345 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHH-----hcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 046719 237 PTRVTYNTLVDGYC-----KVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCK 286 (808)
Q Consensus 237 p~~~~~~~li~~~~-----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 286 (808)
.|-.+|..+|+.|. |.|.++-....+..|.+.|+..|..+|+.|+..+=+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 35666666666665 346666666667777777777777777777776643
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.14 E-value=0.093 Score=52.96 Aligned_cols=164 Identities=16% Similarity=0.133 Sum_probs=94.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCC---CCcCHHhHHHHHHHHHH---cC-HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 593 NSLISGYSSLGSSQKCLELYENMKKLG---IKPSLRTYHPLLSGCIR---EG-IVAVEKLFNEMLQINLVPDLLVYNALI 665 (808)
Q Consensus 593 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~---~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 665 (808)
..++-+|....+++..+++.+.+.... +.-....-....-++.+ .| .++|.+++..++.....+++.+|..++
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344556888888888888888887641 11112222233444555 66 888888888866555567777777777
Q ss_pred HHHH----c-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh----HHHHHHHH----HHHCCCC-C-
Q 046719 666 HCYA----E-----HGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLS----EVKELVND----MKVKGLI-P- 726 (808)
Q Consensus 666 ~~~~----~-----~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~----~A~~~~~~----~~~~g~~-p- 726 (808)
..|- . ....++|+..|.+.-+ +.||..+-..++..+...|... +..++.-+ +.++|.. +
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6653 2 1246777777777766 4566554334444444444322 22222211 1133322 2
Q ss_pred -CHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 727 -KADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 727 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
+-..+..++.+..-.|++++|.+.+++|.+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 23344466777777777777777777777653
No 209
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0043 Score=61.49 Aligned_cols=100 Identities=13% Similarity=-0.026 Sum_probs=85.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHC-----CCCCC---------HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKVK-----GLIPK---------ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSF 763 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 763 (808)
.-++.|.+.|++..|...|++++.. +..+. ..++..+..++.+.+++.+|++...+.++.++. |.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-ch
Confidence 4566788999999999999886542 11111 235678888999999999999999999999877 99
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 764 CIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 764 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
..+++-+++|...|+++.|+..|+++++..|+|-+
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka 326 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKA 326 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence 99999999999999999999999999999999866
No 210
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.11 E-value=0.021 Score=56.28 Aligned_cols=131 Identities=16% Similarity=0.100 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-----CcCHH
Q 046719 556 TFNALINGLCKKGRVMEAEDMLPQITS----SGLN-PDVITYNSLISGYSSLGSSQKCLELYENMKKLGI-----KPSLR 625 (808)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~ 625 (808)
.|..|.+.|.-.|+++.|+...+.-+. .|-. .....+..+.+++.-.|+++.|.+.|+......+ .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 345555556666777777665544321 1211 1124566677777777777777777765543211 12233
Q ss_pred hHHHHHHHHHHcC-HHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 046719 626 TYHPLLSGCIREG-IVAVEKLFNEMLQI-----NLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVD 686 (808)
Q Consensus 626 ~~~~l~~~~~~~~-~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 686 (808)
+..+|.+.|.-.. ++.|...+.+.+.. +..-....+.+|..+|...|..++|+.+.+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4444555554444 66666655544321 1112345666677777777777777766655443
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.10 E-value=0.11 Score=54.60 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=21.7
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHH
Q 046719 293 AKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEE 334 (808)
Q Consensus 293 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 334 (808)
.+.-+++|.++|-.|+... +...++-.|.+.+|.++|.+
T Consensus 619 li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 619 LISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 3344556666666666543 34455556666666666553
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.07 E-value=0.0033 Score=47.55 Aligned_cols=58 Identities=14% Similarity=0.039 Sum_probs=38.5
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 701 FGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 701 ~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
..|.+.+++++|.+.++.+++ +.| ++..|...+.++.+.|++++|...++++++.+|.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 456667777777777777766 334 4555666677777777777777777777766554
No 213
>PRK11906 transcriptional regulator; Provisional
Probab=97.04 E-value=0.064 Score=54.93 Aligned_cols=160 Identities=14% Similarity=0.158 Sum_probs=112.6
Q ss_pred HHH--HHHHHHHHc-----CCCHHHHHHHHHHHHHC-CCCcC-HHhHHHHHHHHHH---------cC-HHHHHHHHHHHH
Q 046719 590 ITY--NSLISGYSS-----LGSSQKCLELYENMKKL-GIKPS-LRTYHPLLSGCIR---------EG-IVAVEKLFNEML 650 (808)
Q Consensus 590 ~~~--~~l~~~~~~-----~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~---------~~-~~~a~~~~~~~~ 650 (808)
..| ..++.+... ....+.|+.+|.+.... .+.|+ ...|..+...+.. .. ..+|.++.++.+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 555555543 22356788899998822 34565 3444443333211 11 567778888888
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-
Q 046719 651 QINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA- 728 (808)
Q Consensus 651 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~- 728 (808)
+.+ +.|......+..++.-.|+++.|...|++... +.||.. +|...++.+.-.|+.++|.+.+++..+ +.|..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~ 406 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRR 406 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhh
Confidence 875 66888888888888888999999999999999 678765 888899999999999999999999888 66753
Q ss_pred --HHHHHHHHHHHccCChhHHHHHHHHHH
Q 046719 729 --DTYNILVKGYCNLKDFGGAYIWYREMF 755 (808)
Q Consensus 729 --~~~~~l~~~~~~~g~~~~A~~~~~~~~ 755 (808)
......++.|+. ...++|+++|-+-.
T Consensus 407 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 434 (458)
T PRK11906 407 KAVVIKECVDMYVP-NPLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHHHHHcC-CchhhhHHHHhhcc
Confidence 333344556655 45678887776544
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.91 E-value=0.0036 Score=48.07 Aligned_cols=61 Identities=25% Similarity=0.277 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCC--CCCC----HHHHHHHHHHHHccCChhHHHHHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKG--LIPK----ADTYNILVKGYCNLKDFGGAYIWYREMF 755 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 755 (808)
+++.++..|...|++++|+.+++++++.. ..++ ..++..++.++...|++++|++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555555555555543210 1111 2233444444444444444444444443
No 215
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.91 Score=49.77 Aligned_cols=176 Identities=17% Similarity=0.201 Sum_probs=116.9
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 046719 207 YNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTL----VDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLG 282 (808)
Q Consensus 207 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 282 (808)
.-.-++.+++...++.|..+-.. .+. |..+...+ .+-+.+.|++++|...|-+.+.. ++|. .+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 44566777777788888777543 222 33333333 34456889999999888776543 3332 4566
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHH
Q 046719 283 GFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEI 362 (808)
Q Consensus 283 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 362 (808)
-|....++.+-..+++.+.+.|+. +...-+.|+.+|.+.++.++..++.+... .|.. .+-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 777778888888889999999886 56666889999999999998887776654 3221 1123446677777777787
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046719 363 AEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQM 405 (808)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 405 (808)
|..+-.+... +......+ +-..|++++|+..+..+
T Consensus 482 a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 7776555432 23233333 34568899999888775
No 216
>PRK15331 chaperone protein SicA; Provisional
Probab=96.85 E-value=0.07 Score=46.42 Aligned_cols=92 Identities=8% Similarity=-0.118 Sum_probs=75.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 046719 663 ALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNL 741 (808)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 741 (808)
....-+...|++++|..+|.-+.-. .| |..-|..|+.++...+++++|+..+..+...+ ..|+......+.++...
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHh
Confidence 3445567899999999999998874 33 44567789999999999999999999986643 24566677889999999
Q ss_pred CChhHHHHHHHHHHHC
Q 046719 742 KDFGGAYIWYREMFEN 757 (808)
Q Consensus 742 g~~~~A~~~~~~~~~~ 757 (808)
|+.+.|...|+.+++.
T Consensus 119 ~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 119 RKAAKARQCFELVNER 134 (165)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999999873
No 217
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.85 E-value=0.011 Score=53.50 Aligned_cols=103 Identities=21% Similarity=0.367 Sum_probs=52.0
Q ss_pred CHhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 046719 378 DEVMFNTIVSGYCR-----TGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTN 452 (808)
Q Consensus 378 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 452 (808)
+-.+|..+++.|.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- |.. .+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-FF 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-HH
Confidence 55566666666553 24555555555555555555566666655555443 2111 010 00
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 046719 453 NTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCK 499 (808)
Q Consensus 453 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 499 (808)
.++-.-| -.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 109 Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1100001 12344566666666666666666666666666655444
No 218
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.83 E-value=0.66 Score=46.86 Aligned_cols=468 Identities=13% Similarity=0.144 Sum_probs=233.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 046719 118 ALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEK 197 (808)
Q Consensus 118 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 197 (808)
-+++-+++.+. |.++.+|-.|+.-|..+|..++-+++++++..- +..-..+|..-+.+-....++.....+|.+.++
T Consensus 28 ~lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 28 ELRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 33555556543 568889999999999999999999999999652 222456788888877777899999999999988
Q ss_pred CCCCCChhhHHHHHHHHHccCCHh--H----HHHHHHHHHh-CCCCCCHH-HHHHHHHHHH---hcC------ChhHHHH
Q 046719 198 SRTRPNVFVYNVLISGFCKEKKIR--D----AEKLFDEMCQ-RKLVPTRV-TYNTLVDGYC---KVG------EFEKVSA 260 (808)
Q Consensus 198 ~~~~~~~~~~~~l~~~~~~~g~~~--~----A~~~~~~m~~-~~~~p~~~-~~~~li~~~~---~~g------~~~~a~~ 260 (808)
.. .+...|...++-.-+.+..- + -.+.|+-... .++.|-.. .|+..+..+- ..| +.|....
T Consensus 105 k~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~ 182 (660)
T COG5107 105 KS--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRN 182 (660)
T ss_pred hh--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 64 35667777776554433211 1 1222332222 34444332 3444333221 223 3444555
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHh--C
Q 046719 261 LRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSG--R 338 (808)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~ 338 (808)
.+.++....+ |++++..+-|+..... .+..|-...+. -..--+-.|.+.++++.. .
T Consensus 183 ~Y~ral~tP~-----------------~nleklW~dy~~fE~e---~N~~TarKfvg--e~sp~ym~ar~~yqe~~nlt~ 240 (660)
T COG5107 183 GYMRALQTPM-----------------GNLEKLWKDYENFELE---LNKITARKFVG--ETSPIYMSARQRYQEIQNLTR 240 (660)
T ss_pred HHHHHHcCcc-----------------ccHHHHHHHHHHHHHH---HHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHhc
Confidence 5555543221 2222222222211110 00000000000 000011123333333221 1
Q ss_pred CCCc----Ch-----------hcHHHHHHHHHhcC------ChHH-HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 046719 339 GFRI----NS-----------YTCSILLNALCKEG------KVEI-AEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLN 396 (808)
Q Consensus 339 ~~~~----~~-----------~~~~~l~~~~~~~g------~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 396 (808)
|... +. .-|...|..-...| -... .--++++.+.. +.-....|--.-..+...++-+
T Consensus 241 Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q 319 (660)
T COG5107 241 GLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQ 319 (660)
T ss_pred cccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHH
Confidence 1110 00 11222222211111 0111 11112222221 1112233433333445566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hcCChHHHHHHH
Q 046719 397 RAMLAIQQMENHGLAPNCITFNT-LIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYG---RMGHFDKCFQIL 472 (808)
Q Consensus 397 ~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~ 472 (808)
.|+...+..... .|. .+. +...|--..+-+.....|+..... ...--..+..-. .-|+++.-.+++
T Consensus 320 ~al~tv~rg~~~--sps---L~~~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell 389 (660)
T COG5107 320 KALKTVERGIEM--SPS---LTMFLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELL 389 (660)
T ss_pred HHHHHHHhcccC--CCc---hheeHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHH
Confidence 666655543322 122 221 222222233334443334333211 000000000000 012232222222
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 046719 473 EEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRG-VLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMG 551 (808)
Q Consensus 473 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 551 (808)
-.-. ..-..+|...++...+..-.+.|..+|-++.+.+ +.+++.++++++..++ .|+..-|..+|+.-+.. ++
T Consensus 390 ~kr~----~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~ 463 (660)
T COG5107 390 LKRI----NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FP 463 (660)
T ss_pred HHHH----hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CC
Confidence 1111 1235567778888888888888999999998887 5667778888887765 46777888888877665 33
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHH
Q 046719 552 PTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPD--VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHP 629 (808)
Q Consensus 552 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 629 (808)
.+..-.+-.+..+...++-..|..+|+..+.. +..+ -..|..+|+.-..-|+...+..+=+.|.+. -|...+...
T Consensus 464 d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~ev 540 (660)
T COG5107 464 DSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEV 540 (660)
T ss_pred CchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHH
Confidence 34444455667778888888999999866543 1222 356888888778888888888777777763 344444333
Q ss_pred HHH
Q 046719 630 LLS 632 (808)
Q Consensus 630 l~~ 632 (808)
+..
T Consensus 541 F~S 543 (660)
T COG5107 541 FTS 543 (660)
T ss_pred HHH
Confidence 333
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.74 E-value=0.23 Score=46.54 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=29.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 046719 386 VSGYCRTGDLNRAMLAIQQMENHGLA--PNCITFNTLIDKFCELGEMDKAEEWVKRMLEK 443 (808)
Q Consensus 386 i~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 443 (808)
...+...|++.+|+..|+.+...... --....-.++.++.+.|+++.|...++..++.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33445566666666666666554221 11223344555566666666666666665554
No 220
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.73 E-value=0.61 Score=45.05 Aligned_cols=85 Identities=22% Similarity=0.188 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 046719 533 GRIKDAFKFFDEMVKREMG-PTLVTFNALINGLCKKGRVMEAEDMLPQITSS-GLNPDVITYNSLISGYSSLGSSQKCLE 610 (808)
Q Consensus 533 g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 610 (808)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+.+..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444433211 01344444555555555555555555555431 112233344444444455555555555
Q ss_pred HHHHHHH
Q 046719 611 LYENMKK 617 (808)
Q Consensus 611 ~~~~~~~ 617 (808)
.+.....
T Consensus 117 ~~~~~~~ 123 (291)
T COG0457 117 LLEKALA 123 (291)
T ss_pred HHHHHHc
Confidence 5555544
No 221
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.71 E-value=0.35 Score=45.35 Aligned_cols=60 Identities=10% Similarity=0.182 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046719 419 TLIDKFCELGEMDKAEEWVKRMLEKGVS--PNVKTNNTLIDGYGRMGHFDKCFQILEEMENS 478 (808)
Q Consensus 419 ~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 478 (808)
.....+...|++++|...|+.+...-.. --....-.++.++.+.|+++.|...+++....
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566778888888888888765221 12344556677778888888888888887654
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.69 E-value=0.0032 Score=48.34 Aligned_cols=63 Identities=22% Similarity=0.271 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFEN----GFI-PS-FCIYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
.++..++.+|...|++++|+.+++++++. |.. |+ ..++..++.++...|++++|+.++++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666777777777777777777776642 221 11 44566777777777777777777777654
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.68 E-value=0.0086 Score=60.94 Aligned_cols=98 Identities=14% Similarity=0.054 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHH
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA----DTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYN 767 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 767 (808)
+...++.++.+|.+.|++++|+..|++.++ +.|+. .+|+.++.+|...|++++|+..++++++.+ .+. |.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~~---f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NLK---FS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-chh---HH
Confidence 455899999999999999999999999998 67864 358999999999999999999999999863 211 21
Q ss_pred HHHH--HHHhcCChhHHHHHHHHHHHcCCC
Q 046719 768 ELTN--GLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 768 ~l~~--~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
.+.. .+..-.+.++..++++...+-+..
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1111 122233456777788888777643
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.63 E-value=0.12 Score=55.30 Aligned_cols=120 Identities=16% Similarity=0.041 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHccCChhHH
Q 046719 672 GDVQKALVLHSEMVDQGIRPDKMTYN-SLIFGHLREGKLSEVKELVNDMKVKG--L-IPKADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 672 g~~~~A~~~~~~~~~~g~~pd~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~g--~-~p~~~~~~~l~~~~~~~g~~~~A 747 (808)
...+.|.++++.+.+. -|+...|. .-+..+...|++++|++.++++.+.. . +.....+.-++.++.-..+|++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 4455555555555552 34443322 33444555555666666555543210 0 01123344555556666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-------hHHHHHHHHHHHcC
Q 046719 748 YIWYREMFENGFIPSFCIYNELTNGLKQEGKL-------KEAQILCSEISIVG 793 (808)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~-------~~A~~~~~~~~~~~ 793 (808)
.+.+.++.+..--......+..+-++...|+. ++|..++.++.+..
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 66666665532221122222334455556655 66666666665433
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.62 E-value=0.028 Score=57.35 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046719 655 VPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM----TYNSLIFGHLREGKLSEVKELVNDMKVK 722 (808)
Q Consensus 655 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 722 (808)
+.+...++.+..+|.+.|++++|+..|++.++ +.|+.. +|..++.+|...|++++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44678999999999999999999999999999 677753 5899999999999999999999999984
No 226
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.61 E-value=0.0047 Score=40.88 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELT 770 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 770 (808)
.+|..++..|...|++++|.++|+++++..|+ |+..+..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 34566677777777777777777777776665 666665554
No 227
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.61 E-value=0.76 Score=46.59 Aligned_cols=163 Identities=10% Similarity=0.019 Sum_probs=83.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 046719 557 FNALINGLCKKGRVMEAEDMLPQITSSG---LNPDVITYNSLISGYSS---LGSSQKCLELYENMKKLGIKPSLRTYHPL 630 (808)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 630 (808)
...++-.|....+++.-+++++.+...- +.-....--..+-++.+ .|+.++|++++..+......++..++..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3344445667777777777777776521 00011111223334445 67777777777775554555666666666
Q ss_pred HHHHH----H---cC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----HHHHHHHH---H-HHHHCCCC--
Q 046719 631 LSGCI----R---EG---IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGD----VQKALVLH---S-EMVDQGIR-- 690 (808)
Q Consensus 631 ~~~~~----~---~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~---~-~~~~~g~~-- 690 (808)
...|- . .+ .+.|...|.+.-+. .|+...--.++..+...|. -.+..++- . .+.++|..
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 65542 1 11 55666666666553 3443322222223333332 12223332 1 11123322
Q ss_pred -CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 691 -PDKMTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 691 -pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
.|...+.+++.++.-.|+.++|.+..++|.+
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 2333455667777777777777777777765
No 228
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.63 Score=43.51 Aligned_cols=133 Identities=12% Similarity=0.091 Sum_probs=93.4
Q ss_pred HHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHH
Q 046719 628 HPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQ-----GIRPDKMTYNSLIF 701 (808)
Q Consensus 628 ~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~pd~~~~~~l~~ 701 (808)
+.++..+...+ +.-...++++.++.+.+.++.....|+..-.+.|+.+.|...|++..+. ++.-+.........
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34444444445 6777778888888766677888888888888899999999999876543 22323334445556
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 046719 702 GHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP 761 (808)
Q Consensus 702 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 761 (808)
.+.-++++.+|...+.++...+ ..|+..-+.-+-++.-.|+..+|++.++.|.+..|.|
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 6777888889998888887642 2345555555555556889999999999998876654
No 229
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.58 E-value=1.3 Score=46.88 Aligned_cols=183 Identities=15% Similarity=0.075 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 046719 589 VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLV--PDLLVYNALI 665 (808)
Q Consensus 589 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 665 (808)
..+|...++.-.+.|+.+.+.-+|+...-- +.-=...|--.+.-....| .+-+..++....+.-.+ |......+.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~- 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR- 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH-
Confidence 356666666666677777766666665421 1111122222222223334 55555444444332222 222222222
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHH---HHHHHHHHCCCCCC--HHHHHHHHHH-H
Q 046719 666 HCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVK---ELVNDMKVKGLIPK--ADTYNILVKG-Y 738 (808)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~~~g~~p~--~~~~~~l~~~-~ 738 (808)
..-..|+++.|..+++.+.+. . |+.+ .-..-+....+.|..+.+. +++....+....+. ...+...... +
T Consensus 375 -f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 -FEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred -HHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 223346777777777777664 3 5543 2223344555666666665 33333222111111 1111111111 1
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 739 CNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG 777 (808)
Q Consensus 739 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 777 (808)
.-.++.++|..++.++.+..+. +...|..+++.....+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~-~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPD-CKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCc-cHHHHHHHHHHHHhCC
Confidence 2246677777777777765444 5555555555554443
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.55 E-value=0.061 Score=47.42 Aligned_cols=68 Identities=22% Similarity=0.253 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHH-----HCCCCCCHHH
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMF-----ENGFIPSFCI 765 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~ 765 (808)
...++..+...|++++|..++++++. ..| |...|..++.+|...|+..+|.+.|+++. +.|+.|++.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34555566667777777777777666 344 45566677777777777777777666653 2466665543
No 231
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.49 E-value=0.028 Score=49.69 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=56.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 046719 665 IHCYAEHGDVQKALVLHSEMVDQGIRPDK-----MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGY 738 (808)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~~~~~g~~pd~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 738 (808)
.+-+.+.|++++|..-|..+++. +++-. +.|..-+.++.+.+.++.|+.-..+.++ +.|+ ......-+.+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHH
Confidence 44456677777777777777764 33221 2344455566677777777777777666 3342 23333445666
Q ss_pred HccCChhHHHHHHHHHHHCCCC
Q 046719 739 CNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 739 ~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
.+..++++|+.-|+++++..|.
T Consensus 179 ek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcc
Confidence 6777777777777777766554
No 232
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=1.7 Score=47.81 Aligned_cols=175 Identities=17% Similarity=0.196 Sum_probs=114.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHH
Q 046719 103 NILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVL----LECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQA 178 (808)
Q Consensus 103 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (808)
..-+..+.+...++.|..+-... + .+..+...+ +.-+.+.|++++|...|-+.+.. .. -..++.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le-----~s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LE-----PSEVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CC-----hHHHHHH
Confidence 44567777888888888775433 2 334333333 44456789999999988776532 11 2345666
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 046719 179 AVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKV 258 (808)
Q Consensus 179 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 258 (808)
|....+..+-..+++.+.+.|.. +...-+.|+.+|.+.++.+.-.++.+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 66667777777888888888875 66667889999999999887666655443 2211 11134556666777777777
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 046719 259 SALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEM 300 (808)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 300 (808)
..+-..... +......++. ..|++++|++.+..+
T Consensus 483 ~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 776665422 3444444444 568899999988765
No 233
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.48 E-value=0.054 Score=44.28 Aligned_cols=95 Identities=17% Similarity=0.034 Sum_probs=66.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcc
Q 046719 665 IHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK---ADTYNILVKGYCNL 741 (808)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~ 741 (808)
.-+++..|+++.|++.|.+.+.. .+-....||.-..++.-+|+.++|++=++++++..-... -..|..-+..|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34567778888888888888873 233555788888888888888888888888776421112 23355556677778
Q ss_pred CChhHHHHHHHHHHHCCCC
Q 046719 742 KDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 742 g~~~~A~~~~~~~~~~~~~ 760 (808)
|+-+.|..-|+.+-+.|-+
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 8888888888888777643
No 234
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.29 E-value=0.37 Score=50.79 Aligned_cols=51 Identities=10% Similarity=-0.070 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREM 754 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 754 (808)
+...+..-+.+...+.-|.++|++|-+. ..++......++|++|..+.++.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhC
Confidence 4444444444555555566666555321 23455555666666666655554
No 235
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.18 E-value=1.3 Score=42.62 Aligned_cols=224 Identities=21% Similarity=0.153 Sum_probs=108.5
Q ss_pred CCHHHHHHHHHHHHhCCCCc-chhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 046719 498 CKLLEAEIVLKDMENRGVLP-NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR-EMGPTLVTFNALINGLCKKGRVMEAED 575 (808)
Q Consensus 498 ~~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 575 (808)
+....+...+.......... ....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44555555555554432211 2455666666677777777777777666542 223345555666666666677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCC
Q 046719 576 MLPQITSSGLNPDVITYNSLIS-GYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINL 654 (808)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ 654 (808)
.+.........+ ......... .+...|++++|...+.+... ..|. .
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~------------------------------~ 163 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPE------------------------------L 163 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC------------------------------c
Confidence 777776543222 111222222 45556666666666666533 1121 0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHH
Q 046719 655 VPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYN 732 (808)
Q Consensus 655 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~ 732 (808)
......+......+...++.++|...+.+..+. .+. ....+..+...+...++++.|...+..... ..|+ ...+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~ 240 (291)
T COG0457 164 NELAEALLALGALLEALGRYEEALELLEKALKL-NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALY 240 (291)
T ss_pred cchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHh
Confidence 000111111111134445555555555555542 111 133444555555555555555555555544 2232 23333
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHC
Q 046719 733 ILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 733 ~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
.+...+...+.++++...+.+..+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 241 NLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333333444555555555555543
No 236
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.16 E-value=0.093 Score=49.72 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=79.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCC-CHHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK---MTYNSLIFGHLREGKLSEVKELVNDMKVK-GLIP-KADTYNIL 734 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p-~~~~~~~l 734 (808)
.|+.-+. +.+.|++.+|..-|...++. .+-+. ..+..|+.++...|++++|..+|..+.+. +-.| -+..+..|
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~-YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKK-YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHc-CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4665554 45688899999999999986 23222 24557999999999999999999998753 2223 36889999
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 046719 735 VKGYCNLKDFGGAYIWYREMFENGFIPSF 763 (808)
Q Consensus 735 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 763 (808)
+.+..+.|+.++|..+|++..+.-|..+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 99999999999999999999998766333
No 237
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.13 E-value=1.7 Score=43.63 Aligned_cols=62 Identities=19% Similarity=0.255 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHH
Q 046719 137 INVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLIS 212 (808)
Q Consensus 137 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 212 (808)
|..+...-...|+.+.|..+++ ..|+.. .-|..+.+.|+.+.| +.+..+.| .||. +|..|+.
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~------~Ep~~~---~qVplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~ 64 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLE------LEPRAS---KQVPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLH 64 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHH------cCCChH---HHHHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHH
Confidence 4455566666777777776654 223321 223445555655555 34444443 2333 4445554
No 238
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.09 E-value=0.1 Score=42.67 Aligned_cols=93 Identities=17% Similarity=0.092 Sum_probs=58.4
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHH-CCCCCCH--HHHHHHHHHHHh
Q 046719 700 IFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFE-NGFIPSF--CIYNELTNGLKQ 775 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~--~~~~~l~~~l~~ 775 (808)
+.++...|+++.|++.|.+.+. +-| ++..|+.-..++.-+|+.++|+.-+.++++ .|.+.-. ..|..-+..|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3455666777777777777666 333 566677777777777777777777777776 3444221 234444556666
Q ss_pred cCChhHHHHHHHHHHHcCC
Q 046719 776 EGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 776 ~g~~~~A~~~~~~~~~~~~ 794 (808)
.|+.+.|..-|+.+-..|.
T Consensus 128 ~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGS 146 (175)
T ss_pred hCchHHHHHhHHHHHHhCC
Confidence 7777777777776666553
No 239
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.09 E-value=0.21 Score=48.79 Aligned_cols=165 Identities=16% Similarity=0.167 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCcCH---HhHHHHHHHHHHcC-HHHHHHHHHHHHHCCC---CC--CHHH
Q 046719 591 TYNSLISGYSSLGSSQKCLELYENMKKL-GIKPSL---RTYHPLLSGCIREG-IVAVEKLFNEMLQINL---VP--DLLV 660 (808)
Q Consensus 591 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~---~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~---~~--~~~~ 660 (808)
.|..+..++.+..++.+++.+-+.-... |..|.. ....++..+....+ ++.+.+.|+...+.-. .| ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444445555555555555544433322 222211 11222333333344 7778888877765311 11 2346
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC--CCCC-CH------HHHHHHHHHHHhcCCHhHHHHHHHHHHH----CCCCCC
Q 046719 661 YNALIHCYAEHGDVQKALVLHSEMVDQ--GIRP-DK------MTYNSLIFGHLREGKLSEVKELVNDMKV----KGLIPK 727 (808)
Q Consensus 661 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p-d~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~ 727 (808)
+..|...|.+..++++|+-+..++.+. .+.. |. .+...|..++...|.+-+|.+..++..+ .|-.+.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 778888888888888888777766542 1111 21 1334567778888888888888877644 332221
Q ss_pred -HHHHHHHHHHHHccCChhHHHHHHHHHH
Q 046719 728 -ADTYNILVKGYCNLKDFGGAYIWYREMF 755 (808)
Q Consensus 728 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 755 (808)
......+++.|...|+.+.|..-|+.+.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2234577888888899888888887765
No 240
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.08 E-value=0.19 Score=42.72 Aligned_cols=109 Identities=10% Similarity=0.054 Sum_probs=51.6
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccC
Q 046719 668 YAEHGDVQKALVLHSEMVDQGIRPDK---MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA--DTYNILVKGYCNLK 742 (808)
Q Consensus 668 ~~~~g~~~~A~~~~~~~~~~g~~pd~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g 742 (808)
..+.|++++|.+.|+.+..+ .+... ..-..|+.+|.+.|++++|...+++.++ +.|+. .-|.....+++...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHHHHHHHHHHHH
Confidence 34456666666666665553 22221 1333555566666666666666666555 33321 12222222322211
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 046719 743 DFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 743 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 797 (808)
..+ ..+..+. +.+-|. +...+|...|++++..-|+..
T Consensus 97 ~~~---~~~~~~~--~~drD~-------------~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 97 QDE---GSLQSFF--RSDRDP-------------TPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred Hhh---hHHhhhc--ccccCc-------------HHHHHHHHHHHHHHHHCcCCh
Confidence 111 1222222 111111 125688889999988877754
No 241
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.05 E-value=0.0069 Score=37.22 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=26.5
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 046719 751 YREMFENGFIPSFCIYNELTNGLKQEGKLKEAQ 783 (808)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~ 783 (808)
|+++++..|. ++..|+.|+..|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 5677887777 8888888888888888888885
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.89 E-value=0.13 Score=43.69 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLI-P-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNG 772 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 772 (808)
.+-.-+....+.|++++|++.|+.+...-.. | ....-..++.+|.+.|++++|+..+++.++..|.-....|.....+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 3445566667788888888888887764211 1 2455667888888888888888888888887665333444444444
Q ss_pred H
Q 046719 773 L 773 (808)
Q Consensus 773 l 773 (808)
|
T Consensus 92 L 92 (142)
T PF13512_consen 92 L 92 (142)
T ss_pred H
Confidence 3
No 243
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=3.5 Score=44.87 Aligned_cols=89 Identities=16% Similarity=0.114 Sum_probs=52.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCH--hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 046719 174 KAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKI--RDAEKLFDEMCQRKLVPTRVTYNTLVDGYCK 251 (808)
Q Consensus 174 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 251 (808)
.++..++..+.+..|+++-..+...-.. ...+|.....-+.+..+. +++.+..++=..... .+.++|..+..-...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHh
Confidence 4677777888888888887777542111 245566666656554322 223333222222212 345677777777778
Q ss_pred cCChhHHHHHHHH
Q 046719 252 VGEFEKVSALRER 264 (808)
Q Consensus 252 ~g~~~~a~~~~~~ 264 (808)
.|+++-|..+++.
T Consensus 520 ~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 520 EGRFELARKLLEL 532 (829)
T ss_pred cCcHHHHHHHHhc
Confidence 8888888877764
No 244
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.84 E-value=2.4 Score=42.71 Aligned_cols=107 Identities=18% Similarity=0.172 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 046719 416 TFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLC 495 (808)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 495 (808)
+.+.-+.-+...|+...|.++-.+.. -|+...|...+.+++..++|++-..+... +.++..|-..+..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 33444455555666666665544432 24666666666777777776655544321 224466666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHH
Q 046719 496 KDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFF 542 (808)
Q Consensus 496 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 542 (808)
+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 777766666655541 1134455666667766666553
No 245
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.80 E-value=0.029 Score=53.91 Aligned_cols=94 Identities=11% Similarity=0.034 Sum_probs=56.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 046719 664 LIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLK 742 (808)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 742 (808)
-.+-|.++|.+++|+..|.+.+. +.| |.+++..-+.+|.+..++..|..=.+.++..+ ..-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 34556777777777777777666 445 66666666777777777776666666554421 011233444444445566
Q ss_pred ChhHHHHHHHHHHHCCCC
Q 046719 743 DFGGAYIWYREMFENGFI 760 (808)
Q Consensus 743 ~~~~A~~~~~~~~~~~~~ 760 (808)
+..+|.+-++.+++..|.
T Consensus 180 ~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK 197 (536)
T ss_pred hHHHHHHhHHHHHhhCcc
Confidence 666666666666665433
No 246
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.80 E-value=0.09 Score=46.31 Aligned_cols=69 Identities=19% Similarity=0.324 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCCCChh
Q 046719 136 SINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEK-----SRTRPNVF 205 (808)
Q Consensus 136 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 205 (808)
+...++..+...|++++|..+...++...+. |...|..++.+|...|+...|.++|+++.+ .|+.|+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 3445566666667777777777766665554 666666777777777777777776666543 25555543
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.69 E-value=0.68 Score=47.79 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=27.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHHhcCCHhHHHHHHHHH
Q 046719 664 LIHCYAEHGDVQKALVLHSEMVDQGIRP-DK-MTYNSLIFGHLREGKLSEVKELVNDM 719 (808)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 719 (808)
+..++.+.|+.+||++.+++|.+. .++ |. .+...|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke-~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKE-FPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhh-CCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 444444555555555555555542 122 11 14445555555555555555555554
No 248
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.84 Score=43.85 Aligned_cols=143 Identities=15% Similarity=0.096 Sum_probs=87.9
Q ss_pred HHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 046719 634 CIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEV 712 (808)
Q Consensus 634 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A 712 (808)
....| ..++..+|....... +-+....-.++.+|...|+.+.|..++..+-..--.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34445 777888887777653 2234555667778888888888888887764421111111222234455555555555
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChhH
Q 046719 713 KELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFE--NGFIPSFCIYNELTNGLKQEGKLKE 781 (808)
Q Consensus 713 ~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~g~~~~ 781 (808)
..+-.++-. .| |...-..+...+...|+.++|.+.+-.+++ .|.. |...-..|+..+.-.|..+.
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCH
Confidence 555555443 34 566667777788888888888877777665 3555 66667777777766664333
No 249
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=0.36 Score=46.72 Aligned_cols=156 Identities=8% Similarity=-0.048 Sum_probs=116.5
Q ss_pred HHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCH
Q 046719 635 IREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM----TYNSLIFGHLREGKL 709 (808)
Q Consensus 635 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~----~~~~l~~~~~~~g~~ 709 (808)
...| ..+|...++++++. .+.|...++-.-++|.-.|+.+.-...+++++-. ..||.. ....+..++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3445 77888888888875 4778888888889999999999999999998875 456653 233556677889999
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChhHHHH
Q 046719 710 SEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI----PSFCIYNELTNGLKQEGKLKEAQI 784 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~l~~~g~~~~A~~ 784 (808)
++|.+..++..+ +.+ |...-..+...+.-.|++.++.++..+-... -+ .-...|-..+-.+.+.+.++.|+.
T Consensus 192 ~dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 192 DDAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hhHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 999999999887 444 5666678888888899999999988775421 11 012233355667788899999999
Q ss_pred HHHHHHHcCCC
Q 046719 785 LCSEISIVGKD 795 (808)
Q Consensus 785 ~~~~~~~~~~~ 795 (808)
+|+.-+-+..+
T Consensus 269 IyD~ei~k~l~ 279 (491)
T KOG2610|consen 269 IYDREIWKRLE 279 (491)
T ss_pred HHHHHHHHHhh
Confidence 99876654433
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.59 E-value=0.69 Score=49.62 Aligned_cols=115 Identities=15% Similarity=0.160 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHHCC--CC-CCHHHHHHHHHHHHhcCCHhHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNA-LIHCYAEHGDVQKALVLHSEMVDQG--IR-PDKMTYNSLIFGHLREGKLSEVKE 714 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~g--~~-pd~~~~~~l~~~~~~~g~~~~A~~ 714 (808)
.+.+.+++..+.+. -|+...|.. -.+.+...|++++|++.|++..+.. .+ .....+.-+++.+.-.++|++|.+
T Consensus 249 ~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 249 LEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 78888888888875 466655543 3566778899999999999876421 11 123456688899999999999999
Q ss_pred HHHHHHHCCCCCCHHHHH-HHHHHHHccCCh-------hHHHHHHHHHHH
Q 046719 715 LVNDMKVKGLIPKADTYN-ILVKGYCNLKDF-------GGAYIWYREMFE 756 (808)
Q Consensus 715 ~~~~~~~~g~~p~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~~~~ 756 (808)
.+..+.+.. .-...+|. ..+.++...|+. ++|.+++.++-.
T Consensus 327 ~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 327 YFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999998742 12233333 445555678888 888888887754
No 251
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.50 E-value=0.89 Score=40.72 Aligned_cols=90 Identities=16% Similarity=0.069 Sum_probs=47.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 046719 665 IHCYAEHGDVQKALVLHSEMVDQGIRPDKM----TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCN 740 (808)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 740 (808)
...+..+|++++|...++..+.. +.|.. +-..|.....+.|.+++|...++...+.+. .......-++++..
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 34455666666666666655542 11211 122445556666666666666655444222 12223445566666
Q ss_pred cCChhHHHHHHHHHHHCC
Q 046719 741 LKDFGGAYIWYREMFENG 758 (808)
Q Consensus 741 ~g~~~~A~~~~~~~~~~~ 758 (808)
.|+-++|+.-|+++++.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 666666666666666554
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=2.2 Score=41.12 Aligned_cols=122 Identities=11% Similarity=-0.022 Sum_probs=52.6
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHH
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAY 748 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 748 (808)
...|++.+|...|+..... .+-+...-..++.+|...|+.+.|..++..+....-.........-+..+.+..+..+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~-~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQA-APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHh-CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 4445555555555555543 111222334455555555555555555555332111111111112233333344444333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 749 IWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
.+-+++- .+|. |...-..|+..|...|+.++|...+-.++.++
T Consensus 224 ~l~~~~a-adPd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 224 DLQRRLA-ADPD-DVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3333322 2222 45555555555555555555555555555443
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.35 E-value=1.7 Score=44.99 Aligned_cols=148 Identities=16% Similarity=0.142 Sum_probs=84.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 046719 524 MLIDGSCTMGRIKDAFKFFDEMVKREMGPTL-VTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSL 602 (808)
Q Consensus 524 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 602 (808)
.+|.-.-+..+.+.-++.-++.++. .|+. ..|..|. --......++.+++++.++.|-. .+ .+.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~----~l-------g~s 237 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLA--EEEASTIVEAEELLRQAVKAGEA----SL-------GKS 237 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHHH----hh-------chh
Confidence 4444455666777777777777764 3433 2232221 22344578888888888764310 00 110
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHH
Q 046719 603 GSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVP-DLLVYNALIHCYAEHGDVQKALVL 680 (808)
Q Consensus 603 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 680 (808)
...+..-..++........|-..+-..+...+.+.| .++|.+.++++.+..... ...+...|+.++...+.+.++..+
T Consensus 238 ~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 238 QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 001111112222222222222333334555566778 999999999998753222 334677889999999999999999
Q ss_pred HHHHHH
Q 046719 681 HSEMVD 686 (808)
Q Consensus 681 ~~~~~~ 686 (808)
+.+--+
T Consensus 318 L~kYdD 323 (539)
T PF04184_consen 318 LAKYDD 323 (539)
T ss_pred HHHhcc
Confidence 998754
No 254
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.27 E-value=0.048 Score=33.45 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 764 CIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 764 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
..+..++.++...|++++|+..+++++...|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555666666666666666666666665554
No 255
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.24 E-value=2.3 Score=38.71 Aligned_cols=179 Identities=15% Similarity=0.123 Sum_probs=100.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHH
Q 046719 114 LPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFD 193 (808)
Q Consensus 114 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 193 (808)
....|+-=|.+..... |.-+.+||.|.--+...|+++.|.+.|+...+.++.-+-...|.-|. +.--|++..|.+-|.
T Consensus 80 L~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~ 157 (297)
T COG4785 80 LRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLL 157 (297)
T ss_pred HHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHH
Confidence 3344444444444432 23467899999999999999999999999998766633333343333 446789999988777
Q ss_pred HhhhCCC-CCChhhHHHHHHHHHccCCHhHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 046719 194 GMEKSRT-RPNVFVYNVLISGFCKEKKIRDAEKLF-DEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVE 271 (808)
Q Consensus 194 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 271 (808)
+.-+.++ .|-...|--+.. +.-+..+|..-+ ++..+. |..-|...|-.|.- |... ...++++++.....
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~ 228 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKADATD 228 (297)
T ss_pred HHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccc
Confidence 7766543 233334433332 334566666544 333332 66666666555432 2221 12233443332110
Q ss_pred ------cCHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 272 ------VSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAH 303 (808)
Q Consensus 272 ------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 303 (808)
.-..||--+.+-+...|+.++|..+|+-.+..
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 01124555555566666666666666655543
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.88 Score=44.16 Aligned_cols=152 Identities=17% Similarity=0.125 Sum_probs=99.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHH----HHHHHHcC-
Q 046719 564 LCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPL----LSGCIREG- 638 (808)
Q Consensus 564 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~~- 638 (808)
+...|+..+|...++++++. .+.|..++.--=++|.-.|+.+.-...++++... ..++...|..+ ..++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 44577888888888888765 3557777777777888888888777777777753 34554444332 23345667
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHhHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP----DKMTYNSLIFGHLREGKLSEVKE 714 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p----d~~~~~~l~~~~~~~g~~~~A~~ 714 (808)
+++|++.-++..+.+ +.|.....++.+.+-..|+..++.++..+-... .+- -...|...+-.+...+.++.|.+
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 888888888777754 456666667777777788888888776554331 111 11234455555666677888888
Q ss_pred HHHHH
Q 046719 715 LVNDM 719 (808)
Q Consensus 715 ~~~~~ 719 (808)
+|+.-
T Consensus 269 IyD~e 273 (491)
T KOG2610|consen 269 IYDRE 273 (491)
T ss_pred HHHHH
Confidence 87763
No 257
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.19 E-value=5.3 Score=42.56 Aligned_cols=183 Identities=15% Similarity=0.139 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHH
Q 046719 448 NVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLID 527 (808)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 527 (808)
+..+|...++.-.+.|+++...-+|++..-. +..-...|-..+......|+.+-|..++....+-.++ +......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHH
Confidence 4567888888888888888888888887532 2223445555555555667777777666655554333 2222222222
Q ss_pred HHH-hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHH---HHHHHHHhCCCCCCH--HHHHHHHH-HH
Q 046719 528 GSC-TMGRIKDAFKFFDEMVKREMGPT-LVTFNALINGLCKKGRVMEAE---DMLPQITSSGLNPDV--ITYNSLIS-GY 599 (808)
Q Consensus 528 ~~~-~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~--~~~~~l~~-~~ 599 (808)
.+. ..|+++.|..+++.+.+.- |+ ...-..-+....+.|+.+.+. .++.........+.. ..+...+. .+
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 222 3568888888888877752 33 223333344556677777666 333333221111111 11111111 12
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 046719 600 SSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCI 635 (808)
Q Consensus 600 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 635 (808)
.-.++.+.|..++.++.+. .+++...|..++..+.
T Consensus 452 ~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred HHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 2355666666666666653 4444555555554433
No 258
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.11 E-value=1.1 Score=40.15 Aligned_cols=134 Identities=11% Similarity=0.028 Sum_probs=88.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HH--HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TY--NSLIFGHLREGKLSEVKELVNDMKVKGLIPK--ADTYNIL 734 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l 734 (808)
.|..++.... .+.. +.....+++.... .-+.. .+ ..+...+...|++++|...++..+......+ ..+-..|
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n-~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRL 132 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQAN-GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRL 132 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhc-cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 3444444433 3333 5555556665531 11222 22 2456778899999999999998875322222 2333467
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 735 VKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 735 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.......|++++|+.+++...+.++. ......-+++|...|+.++|+..|++.++..++...
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 88889999999999999987654433 223445688999999999999999999998744433
No 259
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.10 E-value=0.044 Score=36.18 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 764 CIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 764 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
..+..++..|.+.|++++|.++++++++..|++..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 56788999999999999999999999999999876
No 260
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.88 E-value=1.1 Score=44.09 Aligned_cols=130 Identities=12% Similarity=-0.062 Sum_probs=94.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCC-CC-----
Q 046719 661 YNALIHCYAEHGDVQKALVLHSEMVDQGIRP-D----KMTYNSLIFGHLREGKLSEVKELVNDMKVK--GLI-PK----- 727 (808)
Q Consensus 661 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~-p~----- 727 (808)
..++..++...+.++++++.|+.+.+.--.. | ..++..|...+.+..++++|..+..++.+. .+. .|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3456777777889999999999987631111 2 236889999999999999999888886541 111 11
Q ss_pred -HHHHHHHHHHHHccCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046719 728 -ADTYNILVKGYCNLKDFGGAYIWYREMFEN----GFIP-SFCIYNELTNGLKQEGKLKEAQILCSEIS 790 (808)
Q Consensus 728 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 790 (808)
......+.-++...|...+|.+.-+++.+. |-.+ .......++..|...|+.+.|..-|+.+-
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 233457778889999999999998887653 3322 23455678899999999999988887764
No 261
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=3.5 Score=38.43 Aligned_cols=43 Identities=12% Similarity=0.197 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046719 396 NRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRM 440 (808)
Q Consensus 396 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 440 (808)
+.|..+.+++.+. +--+..|+-....|..+|..+.|-..+++.
T Consensus 75 EqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 75 EQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 4444444444432 112233455555666666666665555544
No 262
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=3.8 Score=38.22 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=23.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCC-C--CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 046719 734 LVKGYCNLKDFGGAYIWYREMFENG-F--IPSFCIYNELTNGLKQEGKLKEAQILC 786 (808)
Q Consensus 734 l~~~~~~~g~~~~A~~~~~~~~~~~-~--~~~~~~~~~l~~~l~~~g~~~~A~~~~ 786 (808)
.+-.+....|+..|.+.+++.-+.+ + ..+..+...|+.+| ..|+.+++.+++
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3334444555555555555533211 1 11334444444444 345555555544
No 263
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.66 E-value=8.8 Score=42.44 Aligned_cols=78 Identities=21% Similarity=0.065 Sum_probs=40.3
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCChh
Q 046719 709 LSEVKELVNDMKVKGLIPKADTYNILVKGYCNL----KDFGGAYIWYREMFENGFIPSFCIYNELTNGLK----QEGKLK 780 (808)
Q Consensus 709 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~g~~~ 780 (808)
.+.+...+.+....| +......+.++|..- .+++.|...|..+...+ ......++.++- -.+ +.
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LH 526 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hH
Confidence 445555555554433 344444555555432 24666666666666554 444444544432 122 56
Q ss_pred HHHHHHHHHHHcCC
Q 046719 781 EAQILCSEISIVGK 794 (808)
Q Consensus 781 ~A~~~~~~~~~~~~ 794 (808)
.|.++++++...+.
T Consensus 527 ~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 527 LAKRYYDQASEEDS 540 (552)
T ss_pred HHHHHHHHHHhcCc
Confidence 67777766665443
No 264
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.54 E-value=0.071 Score=32.70 Aligned_cols=30 Identities=23% Similarity=0.181 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 046719 765 IYNELTNGLKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 765 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
.|..++.++...|++++|+..++++++..|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 344455555555555555555555555444
No 265
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.44 E-value=0.69 Score=41.35 Aligned_cols=94 Identities=11% Similarity=-0.002 Sum_probs=58.5
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046719 702 GHLREGKLSEVKELVNDMKVKGLIPK-----ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQE 776 (808)
Q Consensus 702 ~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 776 (808)
-++..|++++|..-|..+++. +++. ...|..-+.++.+.+.++.|++-..++++.+|. ...++.+-+.+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 345566777777777666653 2221 234555566666777777777777777766655 445555566667777
Q ss_pred CChhHHHHHHHHHHHcCCCCC
Q 046719 777 GKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 777 g~~~~A~~~~~~~~~~~~~~~ 797 (808)
.++++|+.-|++++...|..-
T Consensus 182 ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchH
Confidence 777777777777776665543
No 266
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.42 E-value=0.56 Score=39.53 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 046719 411 APNCITFNTLIDKFCELGEMDKAEEWVKRMLEK-GVSPNVKTNNTLID 457 (808)
Q Consensus 411 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~ 457 (808)
.|+..+..+++.+|+.+|++..|.++++...+. +++.+..+|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344445555555555555555555555544432 34444444444443
No 267
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.41 E-value=4.7 Score=38.23 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 046719 381 MFNTIVSGYCRTGDLNRAMLAIQQMENHGLA--PNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDG 458 (808)
Q Consensus 381 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (808)
.|+.-+ .-.+.|++++|.+.|+.+....+- -...+...++-++.+.++++.|+..+++....-......-|...|.+
T Consensus 37 LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 37 LYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 344333 345778888888888888765322 12344555666777888888888888887765322223334444444
Q ss_pred HH
Q 046719 459 YG 460 (808)
Q Consensus 459 ~~ 460 (808)
.+
T Consensus 116 Ls 117 (254)
T COG4105 116 LS 117 (254)
T ss_pred HH
Confidence 43
No 268
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.39 E-value=1.7 Score=37.88 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=68.0
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHH
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRPDKMT-YNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~pd~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 747 (808)
.+.++.+++..++..+.- ++|.... -..-++.+...|++.+|..+++.+.+. .|....-..|...|....+-.+-
T Consensus 21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCChHH
Confidence 466789999999998887 6776653 334567788899999999999997763 34333333444344343333444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 046719 748 YIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQI 784 (808)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~ 784 (808)
..+-+++++.+..|+... |+..+........|..
T Consensus 97 r~~A~evle~~~d~~a~~---Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 97 RRYADEVLESGADPDARA---LVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHhcCCChHHHH---HHHHHHHhccccchhh
Confidence 555666777665554443 4555555555444444
No 269
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.38 E-value=2.9 Score=36.28 Aligned_cols=11 Identities=18% Similarity=0.253 Sum_probs=4.4
Q ss_pred CCHhHHHHHHH
Q 046719 707 GKLSEVKELVN 717 (808)
Q Consensus 707 g~~~~A~~~~~ 717 (808)
++.+.|++++.
T Consensus 110 ~d~~~a~~~~~ 120 (140)
T smart00299 110 GNYEKAIEYFV 120 (140)
T ss_pred cCHHHHHHHHH
Confidence 33444444333
No 270
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.35 E-value=9.4 Score=44.24 Aligned_cols=78 Identities=21% Similarity=0.283 Sum_probs=38.4
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 046719 666 HCYAEHGDVQKALVLHSEMVDQGIRPDKM--TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKD 743 (808)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~~~~~g~~pd~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 743 (808)
.+|..+|+|.+|+.+..++.. .-|.. +-..|+.-+..+++.-+|.++..+... .| .-.+..||+...
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~-----~~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS---DP-----EEAVALLCKAKE 1041 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---CH-----HHHHHHHhhHhH
Confidence 344555555555555554432 11222 124555666666666666666555432 11 122344555566
Q ss_pred hhHHHHHHHHH
Q 046719 744 FGGAYIWYREM 754 (808)
Q Consensus 744 ~~~A~~~~~~~ 754 (808)
|++|+......
T Consensus 1042 ~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1042 WEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHhc
Confidence 66666655443
No 271
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.34 E-value=0.44 Score=40.16 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCcCHHHHHHHHH
Q 046719 235 LVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRD-KVEVSLVMFNSLLG 282 (808)
Q Consensus 235 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~ 282 (808)
..|+..+..+++.+|+..|++..|..+.+...+. +++.+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3455555555555555555555555555555433 34444445555444
No 272
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.23 E-value=6.5 Score=39.13 Aligned_cols=138 Identities=16% Similarity=0.210 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--C----CCHHHHHHHHHHHHHCCC---CcCHHhHHHHHHHHHHcC---
Q 046719 571 MEAEDMLPQITSSGLNPDVITYNSLISGYSS--L----GSSQKCLELYENMKKLGI---KPSLRTYHPLLSGCIREG--- 638 (808)
Q Consensus 571 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~~--- 638 (808)
++...+++.+.+.|+.-+..+|.+....... . ....+|..+|+.|++.-. .++...+..++..-...-
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l 158 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEEL 158 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHH
Confidence 3445566666666666666555442222221 1 234567777777776521 233444444444311111
Q ss_pred HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 639 IVAVEKLFNEMLQINLVPDLL--VYNALIHCYAEHGD--VQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGK 708 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~ 708 (808)
.+.++..|+.+.+.|+..... ....++..+..... ...+.++++.+.+.|+++....|..++-...-.+.
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~ 232 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDP 232 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCc
Confidence 456667777777766554322 22222222111111 34667777777777777766666555544433333
No 273
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=11 Score=41.33 Aligned_cols=253 Identities=17% Similarity=0.141 Sum_probs=121.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCCC
Q 046719 530 CTMGRIKDAFKFFDEMVKREMGPTLVTF----NALINGLCKKGRVMEAEDMLPQITSSGLNPDVITY-NSLISGYSSLGS 604 (808)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~ 604 (808)
...|+..+|.+++.-.+...-.+ ...| ..+.-++...|..+...+++.+.++..-. ++..+ .+|.-++...|.
T Consensus 368 IH~G~~~~~~~ll~pYLP~~~~~-~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~-e~v~hG~cLGlGLa~mGS 445 (929)
T KOG2062|consen 368 IHRGHENQAMKLLAPYLPKEAGE-GSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAEN-EVVRHGACLGLGLAGMGS 445 (929)
T ss_pred eeccccchHHHHhhhhCCccCCC-CCCccccchhhhhhccccCcCccHHHHHHHHHHhccc-hhhhhhhhhhccchhccc
Confidence 45677777887776665441111 1111 11222344455555566766666554322 23333 333334444443
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHH--HHHHHcC--HHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 046719 605 SQKCLELYENMKKLGIKPSLRTYHPLL--SGCIREG--IVAVEK-LFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALV 679 (808)
Q Consensus 605 ~~~A~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~~--~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 679 (808)
.+ .++|+++++.-...+..+-.... -++...| ..+|.+ ++.-..+.... .+.---.+.-++..-|+-++|..
T Consensus 446 a~--~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHe-ki~RGl~vGiaL~~ygrqe~Ad~ 522 (929)
T KOG2062|consen 446 AN--EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHE-KIIRGLAVGIALVVYGRQEDADP 522 (929)
T ss_pred cc--HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHH-HHHHHHHHhHHHHHhhhhhhhHH
Confidence 32 35566555432233333322221 2233334 233322 22222111000 00001122334556678888888
Q ss_pred HHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 680 LHSEMVDQGIRPDKM--TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 680 ~~~~~~~~g~~pd~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
+.++|.... .|-.. -..+++.+|+-.|+..-..+++.-.+.. ...|..-....+-++.-..+.+....+.+-+.+
T Consensus 523 lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~~~~s~V~lLse- 599 (929)
T KOG2062|consen 523 LIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSE- 599 (929)
T ss_pred HHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChhhchHHHHHHhh-
Confidence 888887642 22111 1235667788888766666666655432 222333333444445556666666666655444
Q ss_pred CCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 758 GFIPSF--CIYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 758 ~~~~~~--~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
.+.|.. .+-..|+-+|.-.|. .+|+.+++-|.+
T Consensus 600 s~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 600 SYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 233333 333345555666665 678888877766
No 274
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.12 E-value=8.3 Score=39.97 Aligned_cols=118 Identities=11% Similarity=0.007 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-------
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP---DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP------- 726 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p------- 726 (808)
...+|..++..+.+.|+++.|...+.++...+... +......-+..+...|+..+|+..++...+..+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34567777888888888888888888887643111 22234455677777888888888887766511111
Q ss_pred -------------------C-------HHHHHHHHHHHHcc------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 727 -------------------K-------ADTYNILVKGYCNL------KDFGGAYIWYREMFENGFIPSFCIYNELTNGLK 774 (808)
Q Consensus 727 -------------------~-------~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 774 (808)
+ ...+..++.-+... ++.+++.+.|+++.+..+. ....|..++..+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS-WEKAWHSWALFND 303 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh-HHHHHHHHHHHHH
Confidence 0 12233334334444 7788889999999887655 5667776665544
Q ss_pred h
Q 046719 775 Q 775 (808)
Q Consensus 775 ~ 775 (808)
+
T Consensus 304 ~ 304 (352)
T PF02259_consen 304 K 304 (352)
T ss_pred H
Confidence 3
No 275
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.12 E-value=0.96 Score=47.78 Aligned_cols=131 Identities=19% Similarity=0.228 Sum_probs=82.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 046719 311 TYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYC 390 (808)
Q Consensus 311 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 390 (808)
..+.++.-+.+.|-.+.|+++...-.. -.+...+.|+++.|.++..+. .+...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 355666666666777777665543221 344456778888877764332 36668888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 046719 391 RTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQ 470 (808)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 470 (808)
+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+....+|- ++....++.-.|+.+++.+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 88888888888877543 45566667778888777777776665542 3444445555677777777
Q ss_pred HHHH
Q 046719 471 ILEE 474 (808)
Q Consensus 471 ~~~~ 474 (808)
++.+
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.00 E-value=3.6 Score=36.07 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=49.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHh-hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHH-H--HHHHHccCCHh
Q 046719 146 RCNQYDRALDLFDEIVCMGFRPDKF-TYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNV-L--ISGFCKEKKIR 221 (808)
Q Consensus 146 ~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l--~~~~~~~g~~~ 221 (808)
+.+..++|+.-|..+.+.|...-+. ....+.....+.|+...|...|+++-.....|-..-=.. | .-.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3344444444444444444332111 112222234445555555555555444332222220000 0 11123445555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046719 222 DAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKR 267 (808)
Q Consensus 222 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 267 (808)
+.....+-+...+-+.-...-..|.-+-.+.|++.+|...|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5554444444333222233334444444455555555555555544
No 277
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=12 Score=41.18 Aligned_cols=87 Identities=9% Similarity=0.006 Sum_probs=38.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 046719 315 LFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGK--VEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRT 392 (808)
Q Consensus 315 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 392 (808)
+++-+...+.+..|.++-+-+...-... ..++.....-+.+..+ -+++.+...+-+..-. .+..+|..+.+-....
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQE 520 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhc
Confidence 3444555556666666555543322111 3344444444443321 1112222221111111 2344566666655666
Q ss_pred CCHHHHHHHHH
Q 046719 393 GDLNRAMLAIQ 403 (808)
Q Consensus 393 g~~~~A~~~~~ 403 (808)
|+++-|..+++
T Consensus 521 GR~~LA~kLle 531 (829)
T KOG2280|consen 521 GRFELARKLLE 531 (829)
T ss_pred CcHHHHHHHHh
Confidence 77666666554
No 278
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.99 E-value=3 Score=36.26 Aligned_cols=42 Identities=19% Similarity=0.125 Sum_probs=19.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHc
Q 046719 174 KAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCK 216 (808)
Q Consensus 174 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (808)
.++..+.+.+.+.....+++.+.+.+. .+....|.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444444455555554444432 344444555555543
No 279
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.95 E-value=7.2 Score=38.68 Aligned_cols=162 Identities=8% Similarity=-0.049 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHcC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 626 TYHPLLSGCIREG----IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIF 701 (808)
Q Consensus 626 ~~~~l~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~ 701 (808)
++..++.++...+ .+.+.++++.+.... +..+.++-.-+..+.+.++.+++.+.+.+|+.. +.-....+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 4555666666655 455666666665432 222444545556666688888899999888875 2212223333333
Q ss_pred HH---HhcCCHhHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHccCC------hhHHHHHHHHHHH-CCCCCCHHHH
Q 046719 702 GH---LREGKLSEVKELVNDMKVKGLIPKADTYN-----ILVKGYCNLKD------FGGAYIWYREMFE-NGFIPSFCIY 766 (808)
Q Consensus 702 ~~---~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-----~l~~~~~~~g~------~~~A~~~~~~~~~-~~~~~~~~~~ 766 (808)
.+ ... ....|...+..++...+.|....|. ..+......++ .+....+++...+ .+.+.+..+.
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 33 333 2355666666655433455432111 11111222222 3334444443222 2222233333
Q ss_pred HHH-------HHHHHhcCChhHHHHHHHHHH
Q 046719 767 NEL-------TNGLKQEGKLKEAQILCSEIS 790 (808)
Q Consensus 767 ~~l-------~~~l~~~g~~~~A~~~~~~~~ 790 (808)
..+ +..+++.+++.+|..+|+-.+
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 222 334677889999999998655
No 280
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.73 E-value=12 Score=43.41 Aligned_cols=135 Identities=13% Similarity=0.221 Sum_probs=71.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHH
Q 046719 455 LIDGYGRMGHFDKCFQILEEMENSGMKPNVV----SYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSC 530 (808)
Q Consensus 455 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 530 (808)
.++.--+.|.+++|+.++ .|+.. .|.+..+.+.....+++|.-.|+..-+. .--+.+|.
T Consensus 914 ~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~ 976 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYK 976 (1265)
T ss_pred HHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHH
Confidence 333334455555555444 23433 3344444455566666666666554221 23355667
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 046719 531 TMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLE 610 (808)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 610 (808)
.+|+|.+|+.+..++.... .--..+-..|+.-+...+++-+|-++..+.... | .-.+..|++...+++|+.
T Consensus 977 ~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlr 1047 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALR 1047 (1265)
T ss_pred HhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHH
Confidence 7777777777776654320 001112245666677777777777777666542 1 123344556666777766
Q ss_pred HHHHH
Q 046719 611 LYENM 615 (808)
Q Consensus 611 ~~~~~ 615 (808)
+....
T Consensus 1048 va~~~ 1052 (1265)
T KOG1920|consen 1048 VASKA 1052 (1265)
T ss_pred HHHhc
Confidence 65443
No 281
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.72 E-value=9 Score=39.69 Aligned_cols=104 Identities=11% Similarity=-0.030 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC------
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP---KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPS------ 762 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------ 762 (808)
...+|..++..+.+.|.++.|...+.++.+.+... .+......+..+...|+..+|+..+++.++..+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34488999999999999999999999987643211 345555667778889999999999988887211111
Q ss_pred ---------------------------HHHHHHHHHHHHhc------CChhHHHHHHHHHHHcCCC
Q 046719 763 ---------------------------FCIYNELTNGLKQE------GKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 763 ---------------------------~~~~~~l~~~l~~~------g~~~~A~~~~~~~~~~~~~ 795 (808)
..++..++.-.... +..+++.+.+.++.+..++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence 12333444444444 7778888888888877654
No 282
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.68 E-value=4.6 Score=35.47 Aligned_cols=124 Identities=15% Similarity=0.060 Sum_probs=53.9
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHH---HHHHHHhcCC
Q 046719 109 LSSAKLPSEALQLYASTKADGTRLSLD-SINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGK---AVQAAVKIGD 184 (808)
Q Consensus 109 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~ 184 (808)
+...++.++|+.-|..+.+.|...-+. ..--+.......|+...|...|+++-.-...|-+.-=.. ..-.++..|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 344455555555555555544322111 111223334445555555555555544333332221111 1112344555
Q ss_pred hHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHh
Q 046719 185 LKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQ 232 (808)
Q Consensus 185 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 232 (808)
++....-.+.+...+-+--...-..|.-+-.+.|++..|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 555554444444333222222333444444455555555555555544
No 283
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.66 E-value=0.15 Score=31.20 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
.+|..++.++...|++++|+..++++++..|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4566777777777777777777777776643
No 284
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.58 E-value=3.7 Score=34.16 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=8.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
.++.+|.+.|+..++-+++.++.+
T Consensus 125 kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 125 KIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhHHHHHHHHHH
Confidence 333333333333333333333333
No 285
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.57 E-value=0.94 Score=37.72 Aligned_cols=74 Identities=5% Similarity=-0.074 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHccCC---hhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 725 IPKADTYNILVKGYCNLKD---FGGAYIWYREMFE-NGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 725 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.+...+-..+.+++.+..+ ..+.+.++++..+ ..+.......+.|+-++++.+++++++++++..++..|++-.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 4455555666667766544 4455667777765 333434566666777777777777777777777777776665
No 286
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.42 E-value=0.63 Score=43.96 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=56.6
Q ss_pred CHhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 046719 378 DEVMFNTIVSGYCR-----TGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTN 452 (808)
Q Consensus 378 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 452 (808)
|-.+|.+.+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+.. +.|. ..+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-nvf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-NVF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-HHH
Confidence 55556665555543 2455555556666666666666666666665543311 1111 111
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 046719 453 NTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCK 499 (808)
Q Consensus 453 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 499 (808)
....-.|-+ +-+-+++++++|...|+.||..+-..+++++.+.+-
T Consensus 129 Q~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111112222 234567777777777777777777777777766655
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.31 E-value=0.16 Score=31.64 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=14.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHH
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMF 755 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~ 755 (808)
|..|+.+|.+.|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
No 288
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.31 E-value=0.19 Score=30.74 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
..|..++.++...|++++|++.++++++..|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3566777777777888888888877776644
No 289
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.26 E-value=2.4 Score=44.84 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
+...|..|.+...+.|+++-|.+.|++..+ +..|.-.|.-.|+.+.-.++.+.+..
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555555555555555555554422 33444445555555444444444443
No 290
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.25 E-value=0.75 Score=43.49 Aligned_cols=33 Identities=27% Similarity=0.254 Sum_probs=19.4
Q ss_pred CChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 046719 253 GEFEKVSALRERMKRDKVEVSLVMFNSLLGGFC 285 (808)
Q Consensus 253 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 285 (808)
+.++-....++.|.+-|+..|..+|+.|+..+-
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfP 118 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFP 118 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCc
Confidence 444445555566666666666666666666553
No 291
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.20 E-value=0.16 Score=30.77 Aligned_cols=31 Identities=16% Similarity=0.040 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 765 IYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 765 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
++..++.++.+.|++++|...++++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3456677777777777777777777776665
No 292
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.18 E-value=8 Score=36.74 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=34.1
Q ss_pred HhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046719 530 CTMGRIKDAFKFFDEMVKRE--MGPTLVTFNALINGLCKKGRVMEAEDMLPQITSS 583 (808)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 583 (808)
.+.|++++|.+.|+.+.... -+-...+...++-++.+.+++++|+..+++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 45677777777777776541 1122444555566667777777777777777653
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.11 E-value=2.1 Score=38.90 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=27.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM--TYNSLIFGHLREGKLSEVKELVNDM 719 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~--~~~~l~~~~~~~g~~~~A~~~~~~~ 719 (808)
.+..+++.|.+.|+.++|++.|.++.+....+... .+-.++......+++..+..++.++
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444555555555555555555554443333221 3334444444455555555444444
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.07 E-value=1.4 Score=40.08 Aligned_cols=62 Identities=11% Similarity=0.031 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA--DTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
.+..++..|.+.|+.++|.+.+.++.+....+.. ..+..++......|++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555666666666666666666666554433332 3344555555566666666666555543
No 295
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.00 E-value=11 Score=37.83 Aligned_cols=150 Identities=19% Similarity=0.120 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAE----HGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREG------- 707 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g------- 707 (808)
..+|.++|....+.|. ......|...|.. ..+..+|...|+++.+.|..+...+...+...+...+
T Consensus 93 ~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~ 169 (292)
T COG0790 93 KTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY 169 (292)
T ss_pred HHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence 4556666665555442 1222234444433 3377888888888888775443233445555555431
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------
Q 046719 708 KLSEVKELVNDMKVKGLIPKADTYNILVKGYCN----LKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG------ 777 (808)
Q Consensus 708 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g------ 777 (808)
+...|...+.++...+ +......++..|.. ..++++|..+|+++-+.|. ......+. .+...|
T Consensus 170 ~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~ 242 (292)
T COG0790 170 DDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKA 242 (292)
T ss_pred HHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhh
Confidence 2347888888887765 44555556655543 3378899999999888765 45555555 566555
Q ss_pred ---------ChhHHHHHHHHHHHcCCCCCc
Q 046719 778 ---------KLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 778 ---------~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+...|..++......+.....
T Consensus 243 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 272 (292)
T COG0790 243 AFLTAAKEEDKKQALEWLQKACELGFDNAC 272 (292)
T ss_pred hhcccccCCCHHHHHHHHHHHHHcCChhHH
Confidence 788888888888888777665
No 296
>PRK09687 putative lyase; Provisional
Probab=92.94 E-value=10 Score=37.45 Aligned_cols=123 Identities=13% Similarity=0.068 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREG-KLSEVKELVNDMKVKGLIPKADTYNILVKG 737 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 737 (808)
.+-...+.++++.|+ ++|+..+-.+.+ .+|...-...+.++...+ ....+...+..++. .+|..+-...+.+
T Consensus 143 ~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~a 215 (280)
T PRK09687 143 NVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIG 215 (280)
T ss_pred HHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHH
Confidence 333344444444444 344454444444 223333333333333332 12344444444442 3344444445555
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 738 YCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
+.+.|+ ..|+..+-+.++.+ + .....+.++.+.|.. +|...+.++.+..++
T Consensus 216 Lg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d 266 (280)
T PRK09687 216 LALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDD 266 (280)
T ss_pred HHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCC
Confidence 555555 34555555544331 1 223455555555553 455555555554443
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.63 E-value=4.2 Score=35.56 Aligned_cols=103 Identities=18% Similarity=0.043 Sum_probs=69.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKVKGLIPKADT-YNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQE 776 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 776 (808)
.+++.-.+.++.+++..++.-+.- +.|.... -..-+..+...|+|.+|..+++++.+..+. .+..-..++.||...
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~-~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG-FPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHHc
Confidence 344455677899999999999887 6776433 334566778899999999999998876554 555555667777776
Q ss_pred CChhHHHHHHHHHHHcCCCCCchhhhHh
Q 046719 777 GKLKEAQILCSEISIVGKDAWTNEDQSA 804 (808)
Q Consensus 777 g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 804 (808)
|+ .+=..+.++++..+++.-.....++
T Consensus 92 ~D-~~Wr~~A~evle~~~d~~a~~Lv~~ 118 (160)
T PF09613_consen 92 GD-PSWRRYADEVLESGADPDARALVRA 118 (160)
T ss_pred CC-hHHHHHHHHHHhcCCChHHHHHHHH
Confidence 65 3344455666666654444333333
No 298
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.55 E-value=5.5 Score=33.24 Aligned_cols=63 Identities=16% Similarity=0.069 Sum_probs=33.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
....+..+..+|+-+.-.+++.+..+ +-++++..+..++.+|.+-|+..+|-.++.++-++|.
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33445555566666666666666554 2244666666666666666666666666666666554
No 299
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.44 E-value=0.13 Score=31.51 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHccCChhHH
Q 046719 728 ADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 728 ~~~~~~l~~~~~~~g~~~~A 747 (808)
...|..++..|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 44455555555555555544
No 300
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.43 E-value=5 Score=34.44 Aligned_cols=91 Identities=10% Similarity=0.012 Sum_probs=55.4
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHH
Q 046719 670 EHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 670 ~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A 747 (808)
..++.+++..+++.|.- +.|+.. .-..-++.+...|++.+|..+++.+.+.+ +. +..-..+..++...||. .=
T Consensus 22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~--~~~p~~kAL~A~CL~al~Dp-~W 96 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA--GAPPYGKALLALCLNAKGDA-EW 96 (153)
T ss_pred hcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC--CCchHHHHHHHHHHHhcCCh-HH
Confidence 47888888888888877 567654 33345677888889999999998887643 22 22222333344444443 23
Q ss_pred HHHHHHHHHCCCCCCHHH
Q 046719 748 YIWYREMFENGFIPSFCI 765 (808)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~ 765 (808)
..+-+++++.+.+|+...
T Consensus 97 r~~A~~~le~~~~~~a~~ 114 (153)
T TIGR02561 97 HVHADEVLARDADADAVA 114 (153)
T ss_pred HHHHHHHHHhCCCHhHHH
Confidence 334445555555545443
No 301
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.37 E-value=4.9 Score=41.43 Aligned_cols=110 Identities=17% Similarity=0.051 Sum_probs=79.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHC---C--CCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-------CCCCCCH--
Q 046719 666 HCYAEHGDVQKALVLHSEMVDQ---G--IRP---DKMTYNSLIFGHLREGKLSEVKELVNDMKV-------KGLIPKA-- 728 (808)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~~~~~---g--~~p---d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~g~~p~~-- 728 (808)
..+.-.|++..|.+++-..--. | +.| ....||.|+..+.+.|.+.-+..+|.++++ .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 4566789999999987654311 2 122 223468999999999999988888888764 4555531
Q ss_pred --------HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046719 729 --------DTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQE 776 (808)
Q Consensus 729 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 776 (808)
......+-.|...|+.-.|.+.|.++...- ..++..|.+|++++...
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf-h~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF-HRNPRLWLRLAECCIMA 382 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHH
Confidence 223344667889999999999999998753 44899999999998654
No 302
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.28 E-value=1.6 Score=42.32 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-----CCCCCCHHHHH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKV-----KGLIPKADTYN 732 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~ 732 (808)
.++..++..+...|+.+.+.+.++++++. .| |...|..++.+|.+.|+...|+..|+++.+ .|+.|.+.+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 45677888888899999999999999984 44 777899999999999999999999988754 67888777766
Q ss_pred HHHHH
Q 046719 733 ILVKG 737 (808)
Q Consensus 733 ~l~~~ 737 (808)
.+...
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66555
No 303
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.17 E-value=22 Score=39.37 Aligned_cols=80 Identities=16% Similarity=0.028 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCCh
Q 046719 672 GDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLRE----GKLSEVKELVNDMKVKGLIPKADTYNILVKGYCN---LKDF 744 (808)
Q Consensus 672 g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~---~g~~ 744 (808)
.+.+.+...+.+....| +......|...|... .+++.|...+......+ ......++..+.. ..++
T Consensus 453 ~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~~ 525 (552)
T KOG1550|consen 453 STLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKVL 525 (552)
T ss_pred cchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcchh
Confidence 36677777777777655 555556666666544 34788888888877654 4444455555432 1126
Q ss_pred hHHHHHHHHHHHCC
Q 046719 745 GGAYIWYREMFENG 758 (808)
Q Consensus 745 ~~A~~~~~~~~~~~ 758 (808)
..|.++++.+.+.+
T Consensus 526 ~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 526 HLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHHhcC
Confidence 88888888887654
No 304
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.05 E-value=0.27 Score=30.65 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 765 IYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 765 ~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
++..|+..|.+.|++++|+.++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999553
No 305
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.73 E-value=15 Score=36.56 Aligned_cols=148 Identities=20% Similarity=0.198 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHH---cC----HHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCC-
Q 046719 605 SQKCLELYENMKKLGIKPSLRTYHPLLSGCIR---EG----IVAVEKLFNEMLQINL---VPDLLVYNALIHCYAEHGD- 673 (808)
Q Consensus 605 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~----~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~- 673 (808)
+++.+.+++.|.+.|+.-+..++......... .+ ...+.++|+.|.+... .++-..+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567788999998888887776664444333 11 5678899999998642 2333444444322 2233
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhH
Q 046719 674 ---VQKALVLHSEMVDQGIRPDKM--TYNSLIFGHLREGK--LSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGG 746 (808)
Q Consensus 674 ---~~~A~~~~~~~~~~g~~pd~~--~~~~l~~~~~~~g~--~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 746 (808)
.+++..+|+.+.+.|+..+.. ....++..+..... ...+.++++.+.+.|+.+....|..++-...-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 466778888888888876443 22233322222222 45788899999999988877777766554444444434
Q ss_pred HHHHHHHH
Q 046719 747 AYIWYREM 754 (808)
Q Consensus 747 A~~~~~~~ 754 (808)
....+.++
T Consensus 236 ~~~~i~ev 243 (297)
T PF13170_consen 236 IVEEIKEV 243 (297)
T ss_pred HHHHHHHH
Confidence 44444443
No 306
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.72 E-value=0.33 Score=29.61 Aligned_cols=30 Identities=20% Similarity=0.151 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 046719 765 IYNELTNGLKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 765 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
+|..++..+...|++++|...+++.++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344455555555555555555555554443
No 307
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.64 E-value=27 Score=39.28 Aligned_cols=145 Identities=8% Similarity=0.009 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 046719 416 TFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLC 495 (808)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 495 (808)
.|..... ..+.|++..+.++...+..... .....|..+.... .....++....+++-. +.+.....-...+..+.
T Consensus 36 ~f~~A~~-a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La 110 (644)
T PRK11619 36 RYQQIKQ-AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANP--TLPPARSLQSRFVNELA 110 (644)
T ss_pred HHHHHHH-HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHH
Confidence 3444333 3456788888777776643211 1222333332211 1224554444444422 12223333344455666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 046719 496 KDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVM 571 (808)
Q Consensus 496 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 571 (808)
+.+++.+....+ .. .+.+...-.....+....|+.++|......+-..|.. .+.....++..+.+.|.+.
T Consensus 111 ~~~~w~~~~~~~----~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 111 RREDWRGLLAFS----PE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HccCHHHHHHhc----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCC
Confidence 677777666522 11 2345555677778888889988887777776555433 4556677777777766543
No 308
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.37 E-value=0.46 Score=32.61 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 766 YNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 766 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
++.++-++.+.|++++|.++++.+++..|++-.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 445555666666666666666666666666555
No 309
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.32 E-value=16 Score=36.17 Aligned_cols=102 Identities=13% Similarity=0.080 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHH
Q 046719 450 KTNNTLIDGYGRMGHFD---KCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLI 526 (808)
Q Consensus 450 ~~~~~l~~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li 526 (808)
.++..++.+|...+..+ +|..+++.+... .+....++..-+..+.+.++.+++.+++..|...- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 34556666777666544 455555555433 22234455455666666777777777777777652 21223333333
Q ss_pred HHH---HhcCCHHHHHHHHHHHHHcCCCCCH
Q 046719 527 DGS---CTMGRIKDAFKFFDEMVKREMGPTL 554 (808)
Q Consensus 527 ~~~---~~~g~~~~A~~~~~~~~~~~~~~~~ 554 (808)
..+ .... ...|...++.++...+.|..
T Consensus 163 ~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEKS-PELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhhC-cHHHHHHHHHHHHHHhCCCh
Confidence 333 3322 34455555555544344433
No 310
>PRK09687 putative lyase; Provisional
Probab=91.00 E-value=17 Score=35.90 Aligned_cols=232 Identities=13% Similarity=0.024 Sum_probs=123.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHhCCCCCCHHHHH
Q 046719 518 NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRV----MEAEDMLPQITSSGLNPDVITYN 593 (808)
Q Consensus 518 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~~ 593 (808)
|.......+.++...|.. ++......+... +|...-...+.++.+.|+. +++...+..+... .++...-.
T Consensus 36 d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 444444455555555542 222333333322 2444444555555555542 3455555555332 34444444
Q ss_pred HHHHHHHcCCCH-----HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 594 SLISGYSSLGSS-----QKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCY 668 (808)
Q Consensus 594 ~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 668 (808)
..+.++...+.. ..+...+..... .++..+-...+.++.+.+..++...+-.+++ .+|...-...+.++
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~---d~~~~VR~~A~~aL 183 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDEAAIPLLINLLK---DPNGDVRNWAAFAL 183 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCHHHHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 444444433221 223333333332 2355555556666666665566666666665 34444445555555
Q ss_pred HccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHH
Q 046719 669 AEHG-DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 669 ~~~g-~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 747 (808)
...+ ...++...+..+.. .+|..+-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|+. +|
T Consensus 184 g~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a 253 (280)
T PRK09687 184 NSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TL 253 (280)
T ss_pred hcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hH
Confidence 5543 24567777776664 4466666777888888777 56777766666543 2 234566777777774 68
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 748 YIWYREMFENGFIPSFCIYNELTNGL 773 (808)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~l~~~l 773 (808)
+..+.++.+.. ||..+.....+.+
T Consensus 254 ~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 254 LPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHhhC--CChhHHHHHHHHH
Confidence 88888887643 3555554444444
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.83 E-value=30 Score=38.37 Aligned_cols=167 Identities=14% Similarity=0.175 Sum_probs=96.3
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhc
Q 046719 106 LSILSSAKLPSEALQLYASTKADGTRL---SLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKI 182 (808)
Q Consensus 106 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (808)
+.-+.+.+.+++|+..-...... .+ -...+...+..|.-.|++++|-.+...|.. -+...|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 34466778888888876554332 22 234677888999999999999999888865 3677788877777776
Q ss_pred CChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 046719 183 GDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALR 262 (808)
Q Consensus 183 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 262 (808)
|.... ++.-+.......+..+|..++..+.. ..-..+++...+. +++..+-...+++- .
T Consensus 437 ~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~----~~~~~F~e~i~~W--p~~Lys~l~iisa~--~---------- 495 (846)
T KOG2066|consen 437 DQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA----SDVKGFLELIKEW--PGHLYSVLTIISAT--E---------- 495 (846)
T ss_pred cccch---hhccCCCCCcccCchHHHHHHHHHHH----HHHHHHHHHHHhC--ChhhhhhhHHHhhc--c----------
Confidence 66543 44444444334556678888877765 2222233333332 22222222222211 0
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 046719 263 ERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEME 301 (808)
Q Consensus 263 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 301 (808)
.+..+. .-+...-..|+..|...++++.|.+++-...
T Consensus 496 ~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 496 PQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred hHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 111110 0111222337777888888888888776554
No 312
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.83 E-value=13 Score=34.13 Aligned_cols=64 Identities=22% Similarity=0.242 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046719 519 AQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSS 583 (808)
Q Consensus 519 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 583 (808)
+.+||.+.--+...|+++.|.+.|+...+.+..-+-...|.-| .+.--|++.-|.+-|.+.-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhc
Confidence 4456666666667777777777777776654332222222222 222356677776666555543
No 313
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.63 E-value=2.1 Score=37.97 Aligned_cols=75 Identities=16% Similarity=0.120 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC-----------HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 046719 674 VQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGK-----------LSEVKELVNDMKVKGLIPKADTYNILVKGYCNL 741 (808)
Q Consensus 674 ~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 741 (808)
+++|+.-|++++. +.|+.. ++..++.+|...+. +++|.+.|+++.+ ..|+...|..-+...
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~--- 123 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA--- 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH---
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH---
Confidence 3444445555555 566554 66666666654432 5556666666665 567766666555443
Q ss_pred CChhHHHHHHHHHHHCC
Q 046719 742 KDFGGAYIWYREMFENG 758 (808)
Q Consensus 742 g~~~~A~~~~~~~~~~~ 758 (808)
.+|-++..+..+.+
T Consensus 124 ---~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 124 ---AKAPELHMEIHKQG 137 (186)
T ss_dssp ---HTHHHHHHHHHHSS
T ss_pred ---HhhHHHHHHHHHHH
Confidence 23555555555543
No 314
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.22 E-value=2.6 Score=40.91 Aligned_cols=77 Identities=21% Similarity=0.231 Sum_probs=54.9
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 046719 346 TCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMEN-----HGLAPNCITFNTL 420 (808)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l 420 (808)
++..++..+...|+.+.+...++++....+. +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3444667777777888888888887776555 777888888888888888888888877654 4666666655544
Q ss_pred HHH
Q 046719 421 IDK 423 (808)
Q Consensus 421 i~~ 423 (808)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 433
No 315
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.14 E-value=6.4 Score=37.00 Aligned_cols=89 Identities=12% Similarity=0.113 Sum_probs=49.4
Q ss_pred HccCCHHHHHHHHHHHHHC----CCCCCH--HHHHHHHHHHHhcCCH-------hHHHHHHHHHHHCCCCC-----CHHH
Q 046719 669 AEHGDVQKALVLHSEMVDQ----GIRPDK--MTYNSLIFGHLREGKL-------SEVKELVNDMKVKGLIP-----KADT 730 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~----g~~pd~--~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~g~~p-----~~~~ 730 (808)
.....+++|++.|..++-. +.+|.. ..+..++|.|...|+. ..|.+.|.+..+..-.| +...
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 4445677777766655421 223332 2556677888777773 34444455444332221 1233
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
...++....+.|++++|.++|.+++..
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 445666666777777777777777654
No 316
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.92 E-value=5.6 Score=37.05 Aligned_cols=113 Identities=17% Similarity=0.094 Sum_probs=68.0
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChh
Q 046719 668 YAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKAD-TYNILVKGYCNLKDFG 745 (808)
Q Consensus 668 ~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~ 745 (808)
|....+++.|+..|.+.+. +.|... -|..=+.++.+..+++.+..=..++++ +.||.. ....++.++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 3445567777777777766 566664 344556666777777777776666666 566643 3445666667777777
Q ss_pred HHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 046719 746 GAYIWYREMFE----NGFIPSFCIYNELTNGLKQEGKLKEAQI 784 (808)
Q Consensus 746 ~A~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~g~~~~A~~ 784 (808)
+|+..++++.. ..+.+-..+...|..+-.+.....++.+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~R 138 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKR 138 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHH
Confidence 77777777743 2334444555555555444444444444
No 317
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.81 E-value=40 Score=38.19 Aligned_cols=249 Identities=14% Similarity=0.057 Sum_probs=123.3
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHhcCCCCCCChhhHHhhhhc---cCCCCCccHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 046719 51 RKIRILFQNNRTEAAQSLIKSIVLSNASPFTSPHELFSLFSV---SSPYYKPTFTNILLSILSSAKLPSEALQLYASTKA 127 (808)
Q Consensus 51 ~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 127 (808)
.-|...+..|++.-|..++++.-..-. .-+...-+..+... .....+|.+.-.-++......++.+|..+..++..
T Consensus 365 eAI~hAlaA~d~~~aa~lle~~~~~L~-~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~ 443 (894)
T COG2909 365 EAIDHALAAGDPEMAADLLEQLEWQLF-NGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEH 443 (894)
T ss_pred HHHHHHHhCCCHHHHHHHHHhhhhhhh-cccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 346777888898888888776411000 00111111111111 00112344433445567778889999988887655
Q ss_pred CCCCCCH-------HHHHHHHH-HHHHcCCHHHHHHHHHHHHHc----CCCcCHhhHHHHHHHHHhcCChHHHHHHHHHh
Q 046719 128 DGTRLSL-------DSINVLLE-CLVRCNQYDRALDLFDEIVCM----GFRPDKFTYGKAVQAAVKIGDLKRACEIFDGM 195 (808)
Q Consensus 128 ~~~~~~~-------~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 195 (808)
.-..|+. ..|+.|-. .....|+++.|..+-+..... -..+....+..+..+..-.|++++|+.+..+.
T Consensus 444 ~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a 523 (894)
T COG2909 444 FLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQA 523 (894)
T ss_pred HhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHH
Confidence 3222221 13443332 234468888888887776653 23345556667777777888888888887776
Q ss_pred hhCCCCCChhhH-----HHHHHHHHccCCH--hHHHHHHHHHHhC-----CC-CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 046719 196 EKSRTRPNVFVY-----NVLISGFCKEKKI--RDAEKLFDEMCQR-----KL-VPTRVTYNTLVDGYCKVGEFEKVSALR 262 (808)
Q Consensus 196 ~~~~~~~~~~~~-----~~l~~~~~~~g~~--~~A~~~~~~m~~~-----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~ 262 (808)
.+..-.-++..+ ..-...+-..|.. .+....|...... .. .+-..++..+..++.+ .+.+..-.
T Consensus 524 ~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ea 600 (894)
T COG2909 524 EQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEA 600 (894)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHh
Confidence 653222232222 2222334456632 2333333333221 00 0122333444444444 33332222
Q ss_pred HHHHh----CCCCcCHHHHH--HHHHHHHccCChhHHHHHHHHHHHC
Q 046719 263 ERMKR----DKVEVSLVMFN--SLLGGFCKAKRMEEAKSVCKEMEAH 303 (808)
Q Consensus 263 ~~~~~----~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~ 303 (808)
..-.+ ....|-...+. .|+......|++++|....+++...
T Consensus 601 r~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 601 RLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred hhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 22221 11222222222 4556666777777777777776553
No 318
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.58 E-value=1.6 Score=42.45 Aligned_cols=90 Identities=12% Similarity=0.120 Sum_probs=42.0
Q ss_pred HHHHcC-HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 046719 633 GCIREG-IVAVEKLFNEMLQINLVP-DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLS 710 (808)
Q Consensus 633 ~~~~~~-~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~ 710 (808)
-|.+.| +++|...|...+.. .| +.+++..-..+|.+..++..|..-...++..+ ..-.-.|..-+.+-...|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 345555 55565555555542 23 45555555555555555555555544444321 000113333333333444455
Q ss_pred HHHHHHHHHHHCCCCCC
Q 046719 711 EVKELVNDMKVKGLIPK 727 (808)
Q Consensus 711 ~A~~~~~~~~~~g~~p~ 727 (808)
+|.+=++..++ ++|+
T Consensus 183 EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHhHHHHHh--hCcc
Confidence 55555555444 4444
No 319
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.19 E-value=45 Score=37.86 Aligned_cols=225 Identities=17% Similarity=0.144 Sum_probs=117.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcc----hh---HHHHHH-HHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 046719 494 LCKDCKLLEAEIVLKDMENRGVLPN----AQ---IYNMLI-DGSCTMGRIKDAFKFFDEMVKR----EMGPTLVTFNALI 561 (808)
Q Consensus 494 ~~~~~~~~~A~~~~~~m~~~~~~~~----~~---~~~~li-~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~ 561 (808)
.....++.+|..+..++...-..|+ .. .++.+- ......|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456677777777777654322211 11 233322 2234578899999988888764 1223455667777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHH--HHHcCCCHHH--HHHHHHHHHHC--CCCc----CHHhHH
Q 046719 562 NGLCKKGRVMEAEDMLPQITSSGLNPDVIT---YNSLIS--GYSSLGSSQK--CLELYENMKKL--GIKP----SLRTYH 628 (808)
Q Consensus 562 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~--~~~~~g~~~~--A~~~~~~~~~~--~~~p----~~~~~~ 628 (808)
.+..-.|++++|..+..+..+..-.-++.. |..+.. .+...|+... ....|...... .-.| -..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 788889999999988877665321223332 333322 3445663322 22233332221 0011 122333
Q ss_pred HHHHHHHHcC--HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC----CHHHHHHHH
Q 046719 629 PLLSGCIREG--IVAVEKLFNEMLQINLVPDLL--VYNALIHCYAEHGDVQKALVLHSEMVDQGIRP----DKMTYNSLI 700 (808)
Q Consensus 629 ~l~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p----d~~~~~~l~ 700 (808)
.++.++.+.. ..++..-+.-.......|-.. .+..|+..+...|++++|...++++......+ +..+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 3444444432 222222222222222222221 22367788888999999999999887643332 222222222
Q ss_pred HH--HHhcCCHhHHHHHHHH
Q 046719 701 FG--HLREGKLSEVKELVND 718 (808)
Q Consensus 701 ~~--~~~~g~~~~A~~~~~~ 718 (808)
.. -...|+.++|.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22 2356777777776665
No 320
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.14 E-value=6 Score=37.19 Aligned_cols=95 Identities=22% Similarity=0.116 Sum_probs=64.9
Q ss_pred HhcCCHhHHHHHHHHHH----HCCCCCC--HHHHHHHHHHHHccCCh-------hHHHHHHHHHHHCCCC-----CCHHH
Q 046719 704 LREGKLSEVKELVNDMK----VKGLIPK--ADTYNILVKGYCNLKDF-------GGAYIWYREMFENGFI-----PSFCI 765 (808)
Q Consensus 704 ~~~g~~~~A~~~~~~~~----~~g~~p~--~~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~-----~~~~~ 765 (808)
.....+++|++.+.-++ -.+..|. ...+..+++.|...|+. ..|.+.|.++.+..-. .+...
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 33445666666665543 1222333 45567889999999984 4566666666653322 23567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 766 YNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 766 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.+.++....+.|+.++|.+++.+++..+...-+
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~ 200 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKASKE 200 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCc
Confidence 788999999999999999999999987755553
No 321
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.06 E-value=3.3 Score=36.85 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=45.9
Q ss_pred HhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCC-----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046719 709 LSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKD-----------FGGAYIWYREMFENGFIPSFCIYNELTNGLKQE 776 (808)
Q Consensus 709 ~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 776 (808)
+++|+.-|++++. +.|+ ..++..++.+|...+. +++|...|+++... +|+...|..-.+...
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~-- 124 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA-- 124 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH--
Confidence 5666667777777 7786 5778888888765442 56667777777655 577777776655542
Q ss_pred CChhHHHHHHHHHHHc
Q 046719 777 GKLKEAQILCSEISIV 792 (808)
Q Consensus 777 g~~~~A~~~~~~~~~~ 792 (808)
+|-.+..++.+.
T Consensus 125 ----kap~lh~e~~~~ 136 (186)
T PF06552_consen 125 ----KAPELHMEIHKQ 136 (186)
T ss_dssp ----THHHHHHHHHHS
T ss_pred ----hhHHHHHHHHHH
Confidence 355555555443
No 322
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=88.82 E-value=3.2 Score=43.68 Aligned_cols=144 Identities=18% Similarity=0.128 Sum_probs=94.3
Q ss_pred cCHHhHHHHHHHHHHcC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHCCCCC--CHHH
Q 046719 622 PSLRTYHPLLSGCIREG---IVAVEKLFNEMLQINLVPDLLVYNALIHCYA-EHGDVQKALVLHSEMVDQGIRP--DKMT 695 (808)
Q Consensus 622 p~~~~~~~l~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~p--d~~~ 695 (808)
|+..+..+++.-....- -+-+..++..| +.-..|--.+.|. ...|. ..|+...|.+.+..+.. ..| ..+.
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~-~~~~~p~w~~ln~-aglywr~~gn~~~a~~cl~~a~~--~~p~~~~v~ 644 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAI-NKPNAPIWLILNE-AGLYWRAVGNSTFAIACLQRALN--LAPLQQDVP 644 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHh-cCCCCCeEEEeec-ccceeeecCCcHHHHHHHHHHhc--cChhhhccc
Confidence 55555555555444333 22233333333 3222332223332 33444 45899999998888775 344 2345
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTN 771 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 771 (808)
...|+..+.+.|...+|-.++.+.+... ...+-++..+++++....+.+.|++.++.+++..++ ++.+-+.|..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~ 718 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKL 718 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHH
Confidence 6678888888898899999998887643 456778888999999999999999999999988776 6666655543
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.67 E-value=13 Score=32.01 Aligned_cols=74 Identities=15% Similarity=0.069 Sum_probs=51.7
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 702 GHLREGKLSEVKELVNDMKVKGLIPKAD-TYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGK 778 (808)
Q Consensus 702 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 778 (808)
.-...++.+++..++..+.- +.|+.. .-..-+..+...|+|++|..++++..+.++. .+..-..++.||...|+
T Consensus 19 ~aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~-~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA-PPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC-chHHHHHHHHHHHhcCC
Confidence 33458899999999999877 667532 2233456677899999999999999887654 34344445556655554
No 324
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.59 E-value=21 Score=33.32 Aligned_cols=95 Identities=11% Similarity=-0.019 Sum_probs=54.5
Q ss_pred HHHHHHcc-CCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHH----
Q 046719 664 LIHCYAEH-GDVQKALVLHSEMVDQGIRPDKM------TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYN---- 732 (808)
Q Consensus 664 l~~~~~~~-g~~~~A~~~~~~~~~~g~~pd~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~---- 732 (808)
+...|-.. .+++.|+..|+..-+. ...+.. .+.-.+..-...+++.+|+.+|++.....+..+.--|.
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~-yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEY-YKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH-HcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 44444333 5778888888877653 111111 22333444556788999999999987654444432222
Q ss_pred --HHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 733 --ILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 733 --~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
.-+-++.-..|.-.+...+++-.+..|
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 222222233677777777777776655
No 325
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.53 E-value=48 Score=37.39 Aligned_cols=191 Identities=17% Similarity=0.094 Sum_probs=90.8
Q ss_pred HcCCCHHHHHHHHHHHHHCCC-Cc-----CHHhHHHHHHH--HHHcC-HHHHHHHHH--------HHHHCCCCCCHHHHH
Q 046719 600 SSLGSSQKCLELYENMKKLGI-KP-----SLRTYHPLLSG--CIREG-IVAVEKLFN--------EMLQINLVPDLLVYN 662 (808)
Q Consensus 600 ~~~g~~~~A~~~~~~~~~~~~-~p-----~~~~~~~l~~~--~~~~~-~~~a~~~~~--------~~~~~~~~~~~~~~~ 662 (808)
+-.+++..|....+.|.+..- .| ....+..++.+ +...| .+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 346677777777777764311 11 12223333333 22334 788888886 333344333333332
Q ss_pred H--HHHHHHccC--CHHH--HHHHHHHHHHC-CCCCC--HHHHHHH-HHHHHhcC--CHhHHHHHHHHHHHCC---CCCC
Q 046719 663 A--LIHCYAEHG--DVQK--ALVLHSEMVDQ-GIRPD--KMTYNSL-IFGHLREG--KLSEVKELVNDMKVKG---LIPK 727 (808)
Q Consensus 663 ~--l~~~~~~~g--~~~~--A~~~~~~~~~~-g~~pd--~~~~~~l-~~~~~~~g--~~~~A~~~~~~~~~~g---~~p~ 727 (808)
. ++..+...+ ...+ +.++++.+... .-.|+ ..+++.+ ++++.... ...++...+.+..+.- ...+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 2 122222222 2222 55566555431 11222 2233333 33433222 2235555555433211 1222
Q ss_pred ---HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC---CHHHHH-----HHHHHHHhcCChhHHHHHHHHHHH
Q 046719 728 ---ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP---SFCIYN-----ELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 728 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~-----~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
..+++.+...+. .|+..+..+....+.....+. ....|. .+...+...|+.++|.....+...
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 222334444444 788888777766665432222 344552 344557788999999988877643
No 326
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.51 E-value=3.1 Score=38.66 Aligned_cols=89 Identities=11% Similarity=-0.055 Sum_probs=73.8
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 046719 702 GHLREGKLSEVKELVNDMKVKGLIPKADT-YNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLK 780 (808)
Q Consensus 702 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 780 (808)
-|....++..|+..+.+.+. +.|+..+ |..-+-++.+..+|+.+..--.++++..+. .....+.++.++.....+.
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHHHHHHHHHHhhcccc
Confidence 45556678999998888887 7887755 557788888999999999999999987655 6788889999999999999
Q ss_pred HHHHHHHHHHHcC
Q 046719 781 EAQILCSEISIVG 793 (808)
Q Consensus 781 ~A~~~~~~~~~~~ 793 (808)
+|+..+.++....
T Consensus 96 eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 96 EAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999986544
No 327
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.06 E-value=5.8 Score=38.46 Aligned_cols=52 Identities=12% Similarity=0.229 Sum_probs=24.4
Q ss_pred HHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 046719 634 CIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMV 685 (808)
Q Consensus 634 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 685 (808)
|.+...+++..+...=+..|+-||..+.+.+++.+.+.+++.+|..+...|.
T Consensus 111 llky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 111 LLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3333333444444444444455555555555555555555555544444443
No 328
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.79 E-value=53 Score=37.04 Aligned_cols=185 Identities=14% Similarity=0.082 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHh-CCCCCCH--HHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcCHh-----hHHHHHHHHHhcCChH
Q 046719 116 SEALQLYASTKA-DGTRLSL--DSINVLLECLV-RCNQYDRALDLFDEIVCMGFRPDKF-----TYGKAVQAAVKIGDLK 186 (808)
Q Consensus 116 ~~a~~~~~~~~~-~~~~~~~--~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~ 186 (808)
..|...+..+.+ ..++|.. .+..-++..|. ...++++|...+.+.....-.++.. ....+++.+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 445555555553 2223322 34556667666 5688888988888775543222222 2234555666665555
Q ss_pred HHHHHHHHhhhC----CCCCChhhHHHH-HHHHHccCCHhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hcCChh
Q 046719 187 RACEIFDGMEKS----RTRPNVFVYNVL-ISGFCKEKKIRDAEKLFDEMCQRK---LVPTRVTYNTLVDGYC--KVGEFE 256 (808)
Q Consensus 187 ~A~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~--~~g~~~ 256 (808)
|....++.++. +..+-...+..+ +..+...+++..|.+.++.+...- ..|-..++-.++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888876653 112223333333 233333478888888888776532 2333444444444433 456666
Q ss_pred HHHHHHHHHHhCC---------CCcCHHHHHHHHHHHH--ccCChhHHHHHHHHHH
Q 046719 257 KVSALRERMKRDK---------VEVSLVMFNSLLGGFC--KAKRMEEAKSVCKEME 301 (808)
Q Consensus 257 ~a~~~~~~~~~~~---------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 301 (808)
++.+.++++.... ..|...+|..++..++ ..|++..+...++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777776663321 1335566777766655 5666666666655553
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.77 E-value=4.6 Score=41.40 Aligned_cols=132 Identities=14% Similarity=0.141 Sum_probs=89.2
Q ss_pred HHcC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 046719 635 IREG--IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEV 712 (808)
Q Consensus 635 ~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A 712 (808)
...| .....+++.-+......|+....-+ ......|+++.+...+...... +.....+...++....+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3445 4445556666666544565544444 3456779999999888766543 444556777888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 713 KELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELT 770 (808)
Q Consensus 713 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 770 (808)
.....-|+...++ ++.............|-++++...|++.+..+++.+....+.|.
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~ 433 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLS 433 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeec
Confidence 9999888866554 34444433444556788999999999998877665555544443
No 330
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.67 E-value=20 Score=31.95 Aligned_cols=25 Identities=8% Similarity=0.290 Sum_probs=11.3
Q ss_pred HHhCCCCcCHHHHHHHHHHHHccCC
Q 046719 265 MKRDKVEVSLVMFNSLLGGFCKAKR 289 (808)
Q Consensus 265 ~~~~~~~~~~~~~~~li~~~~~~g~ 289 (808)
+.+.++.++...|..++..+.+.|+
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 3334444444444444444444444
No 331
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.34 E-value=0.92 Score=27.58 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
.+|..++.++...|++++|.+.|+++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 356777888888888888888888887653
No 332
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.21 E-value=9.2 Score=35.76 Aligned_cols=62 Identities=6% Similarity=-0.061 Sum_probs=36.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 733 ILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 733 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
.+..++...|++-++++.-.+.+...+. +..+|..-+.+.....+..||..-+.+++...|.
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 3344445556666666666666655444 5566666666666666666666666666655544
No 333
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.19 E-value=5.6 Score=38.98 Aligned_cols=93 Identities=15% Similarity=0.028 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 697 NSLIFGHLREGKLSEVKELVNDMKVKGL-IP--KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGL 773 (808)
Q Consensus 697 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 773 (808)
.-=++-|.+..++..|...|.+-++... .| +.+.|+.-+.+-...|++..|+.=...++...|. ....|.+=+.|+
T Consensus 85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 85 KEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGAKCL 163 (390)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhhHHH
Confidence 3344555666666666666666543321 22 2445555555555666666666666666665544 556666666666
Q ss_pred HhcCChhHHHHHHHHHH
Q 046719 774 KQEGKLKEAQILCSEIS 790 (808)
Q Consensus 774 ~~~g~~~~A~~~~~~~~ 790 (808)
....++.+|..++++.+
T Consensus 164 ~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 66666666666665553
No 334
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=86.92 E-value=1.9 Score=45.31 Aligned_cols=126 Identities=9% Similarity=-0.081 Sum_probs=94.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHH
Q 046719 677 ALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK--ADTYNILVKGYCNLKDFGGAYIWYREM 754 (808)
Q Consensus 677 A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 754 (808)
|-.++-.| +..+.|--.+.|..+--....|+...|...+..+.. ..|. .+....|+..+.+.|-..+|-.++...
T Consensus 592 ~~~~~~~~-~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 592 GSFLFHAI-NKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHh-cCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 33344433 333444444554444444568999999999988765 3442 344567888889999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-hhhhHhhh
Q 046719 755 FENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT-NEDQSAVA 806 (808)
Q Consensus 755 ~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~ 806 (808)
+..... .+-.++.+++++....+...|++.++++.++.+++.. .+.++-++
T Consensus 669 l~~~~s-epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 669 LAINSS-EPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred Hhhccc-CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 987755 7778888999999999999999999999999999888 66665543
No 335
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=86.86 E-value=44 Score=35.13 Aligned_cols=75 Identities=8% Similarity=-0.047 Sum_probs=36.2
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCHhhHHH
Q 046719 308 DGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNA-LCKEGKVEIAEEIVGKEIENGLVPDEVMFNT 384 (808)
Q Consensus 308 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 384 (808)
|...|...+.-+-+.+.+.+...+|.+|.... +.++..|..-... |-.+-+++.|..+|.+-+..++. +...|-.
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd-sp~Lw~e 179 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD-SPKLWKE 179 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC-ChHHHHH
Confidence 55555555555555555555555555555542 1122333222222 22233466777777666665433 3334433
No 336
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.71 E-value=1 Score=27.07 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=20.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
+..++.++.+.|++++|.+.|+++++.-|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 45567777777888888888888776543
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.66 E-value=9.4 Score=34.87 Aligned_cols=75 Identities=13% Similarity=-0.025 Sum_probs=47.0
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 046719 709 LSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFEN---GFIPSFCIYNELTNGLKQEGKLKEAQI 784 (808)
Q Consensus 709 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~g~~~~A~~ 784 (808)
-++|.+.|-++...+..-++.....|+.-|. ..|.++|+.++.++++. +-.+|+.++..|+..+.+.|+++.|.-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 3566666666665554445555555554443 56677777777777663 224567777777777777777777754
No 338
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.54 E-value=28 Score=32.54 Aligned_cols=87 Identities=10% Similarity=0.121 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHH--CCCCCCHHHHHHHHH---HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH------HHHHHHhcC
Q 046719 639 IVAVEKLFNEMLQ--INLVPDLLVYNALIH---CYAEHGDVQKALVLHSEMVDQGIRPDKMTYNS------LIFGHLREG 707 (808)
Q Consensus 639 ~~~a~~~~~~~~~--~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~------l~~~~~~~g 707 (808)
++.|...|++.-+ +|-..+...--+++. .-+..|++.+|+.+|++.....+..+..-|.. -+-++.-..
T Consensus 130 ~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~ 209 (288)
T KOG1586|consen 130 FEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKA 209 (288)
T ss_pred HHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcc
Confidence 6778888887766 233333333333332 23567899999999999987644433333322 112222234
Q ss_pred CHhHHHHHHHHHHHCCCCCC
Q 046719 708 KLSEVKELVNDMKVKGLIPK 727 (808)
Q Consensus 708 ~~~~A~~~~~~~~~~g~~p~ 727 (808)
+.-.+...+++-.+ ..|+
T Consensus 210 D~v~a~~ALeky~~--~dP~ 227 (288)
T KOG1586|consen 210 DEVNAQRALEKYQE--LDPA 227 (288)
T ss_pred cHHHHHHHHHHHHh--cCCc
Confidence 55555566666665 5564
No 339
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.26 E-value=0.54 Score=45.90 Aligned_cols=119 Identities=12% Similarity=0.044 Sum_probs=85.2
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChhHH
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA-DTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A 747 (808)
...|.+++|+++|...++.+ +|....|..-..++.+.++...|++=+...++ +.||. ..|-.-..+....|+|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHH
Confidence 45788999999999998852 34455777778888899999999998888887 66764 3355556666778999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 748 YIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
...+..+.+.++.+....+. -...-..++.++-...+++..+.
T Consensus 202 a~dl~~a~kld~dE~~~a~l--KeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSATL--KEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHHhccccHHHHHHH--HHhccchhhhhhchhHHHHHHHH
Confidence 99999999988876655543 33334445555555555555443
No 340
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.25 E-value=1.5 Score=28.06 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=14.3
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 730 TYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 730 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
+++.++..|...|++++|..+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555555555555555555555543
No 341
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.23 E-value=1.7 Score=27.90 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 764 CIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 764 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
.+++.|+..|...|++++|..++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 568899999999999999999999998643
No 342
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=86.02 E-value=63 Score=36.06 Aligned_cols=30 Identities=27% Similarity=0.209 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046719 413 NCITFNTLIDKFCELGEMDKAEEWVKRMLE 442 (808)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 442 (808)
+.....-++..|.+.|-.+.|.++.+.+-.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~ 433 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQ 433 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444455556666666666666666655443
No 343
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.62 E-value=36 Score=32.98 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=29.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046719 350 LLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQM 405 (808)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 405 (808)
....|..+|.+.+|.++.++.+..++- +...|..++..+...|+--.+...++.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 444555556666666655555544322 4445555555565556555555555544
No 344
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.47 E-value=8.8 Score=41.15 Aligned_cols=73 Identities=22% Similarity=0.075 Sum_probs=37.0
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCchhhhHhh
Q 046719 732 NILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWTNEDQSAV 805 (808)
Q Consensus 732 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 805 (808)
..+..+|....+.|.|.++++++.+.++. ++-.-..........|+.++|+..+-+....-.+..++...+++
T Consensus 398 R~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~~~~~~~~l~~ 470 (872)
T KOG4814|consen 398 RALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDEKSTDALILAV 470 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccchhHHHH
Confidence 34444555555666666666666555444 33333344444455555666665555555544444443333333
No 345
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.56 E-value=1.7 Score=25.34 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 766 YNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 766 ~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
+..++.++...|++++|...+++.++.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 334444444455555555555444443
No 346
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.54 E-value=1.4 Score=24.98 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 046719 765 IYNELTNGLKQEGKLKEAQILCS 787 (808)
Q Consensus 765 ~~~~l~~~l~~~g~~~~A~~~~~ 787 (808)
....++..+...|+.++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34456666666666666666554
No 347
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.35 E-value=30 Score=30.87 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 046719 225 KLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALR 262 (808)
Q Consensus 225 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 262 (808)
+..+.+.+.++.|+...+..+|..+.+.|++.....++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34445556666777777777777777777655544433
No 348
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.21 E-value=60 Score=34.28 Aligned_cols=95 Identities=11% Similarity=0.136 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 046719 553 TLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLS 632 (808)
Q Consensus 553 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 632 (808)
|.....+++..+..+-+++-...+..+|...| -+-..|..++.+|... ..++-..+|+++.+..+ .|.+.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 34444555666666666666666666666543 2344555666666555 44555666666655322 22333333333
Q ss_pred HHHHcCHHHHHHHHHHHHH
Q 046719 633 GCIREGIVAVEKLFNEMLQ 651 (808)
Q Consensus 633 ~~~~~~~~~a~~~~~~~~~ 651 (808)
.|.+...+.+..+|.+++.
T Consensus 141 ~yEkik~sk~a~~f~Ka~y 159 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALY 159 (711)
T ss_pred HHHHhchhhHHHHHHHHHH
Confidence 3443225555555555443
No 349
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.93 E-value=78 Score=35.40 Aligned_cols=77 Identities=13% Similarity=0.098 Sum_probs=37.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCC-CChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 046719 175 AVQAAVKIGDLKRACEIFDGMEKSRTR-PNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVG 253 (808)
Q Consensus 175 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 253 (808)
-++.+.+.+.+++|+..-+.....-.. .-..++...|..+.-.|++++|-...-.|... +..-|..-+..+...+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 344555555666665555544332110 02234555555555556666666555555543 4444444444444444
Q ss_pred Ch
Q 046719 254 EF 255 (808)
Q Consensus 254 ~~ 255 (808)
+.
T Consensus 438 ~l 439 (846)
T KOG2066|consen 438 QL 439 (846)
T ss_pred cc
Confidence 43
No 350
>PRK10941 hypothetical protein; Provisional
Probab=83.73 E-value=7.6 Score=37.88 Aligned_cols=63 Identities=8% Similarity=-0.268 Sum_probs=29.4
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 735 VKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 735 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
-.+|.+.++++.|+...+.++...|. ++.-+.-.+-.|.+.|.++.|..-++..++.-|+...
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 33444444444444444444444443 3444444444444444444554444444444444444
No 351
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.46 E-value=64 Score=34.04 Aligned_cols=238 Identities=13% Similarity=0.155 Sum_probs=124.8
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhc------CCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHH-HHHH
Q 046719 365 EIVGKEIENGLVPDEVMFNTIVSGYCRT------GDLNRAMLAIQQMENHG-LAP-NCITFNTLIDKFCELGEMD-KAEE 435 (808)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~li~~~~~~------g~~~~A~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~-~A~~ 435 (808)
.+|+..++. .|+...|+..|..+... ..+...+.+++...+.+ ..+ ....|..+...++...... -|+.
T Consensus 303 ~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~ 380 (568)
T KOG2396|consen 303 AVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVK 380 (568)
T ss_pred HHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHH
Confidence 555555442 34556666666665432 24455556666655433 222 3344555555555544433 3333
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHH-HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HHHH-H-HHHHHH
Q 046719 436 WVKRMLEKGVSPNVKTNNTLIDGYGRMG-HFDKC-FQILEEMENSGMKPNVVSYGSLINWLCKDCK-LLEA-E-IVLKDM 510 (808)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a-~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~A-~-~~~~~m 510 (808)
+..+.. .-+...|..-+....+.. +++-- ..+|......-..+....|+... .++ .... . .+....
T Consensus 381 l~~e~f----~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 381 LTTELF----RDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred hhHHHh----cchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 333333 335555555444444221 22211 12223332221222333333333 122 2111 1 122222
Q ss_pred HhCCCCcchhH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHh-CCCC
Q 046719 511 ENRGVLPNAQI-YNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCK--KGRVMEAEDMLPQITS-SGLN 586 (808)
Q Consensus 511 ~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~-~~~~ 586 (808)
... ..|+..+ -+.+++-+.+.|-.++|...|..+... .+|+...|..++..-.. .-++..++.+++.|.. .|
T Consensus 452 ~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg-- 527 (568)
T KOG2396|consen 452 LSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG-- 527 (568)
T ss_pred HHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--
Confidence 222 3344444 356777778888888999999888775 46677777777764321 1237778888888875 44
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 046719 587 PDVITYNSLISGYSSLGSSQKCLELYENMKK 617 (808)
Q Consensus 587 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 617 (808)
.|+..|...+..-...|..+.+-.++.+..+
T Consensus 528 ~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 528 ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 5677777777766778888888777776654
No 352
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.33 E-value=17 Score=38.87 Aligned_cols=132 Identities=15% Similarity=0.208 Sum_probs=80.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 046719 311 TYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYC 390 (808)
Q Consensus 311 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 390 (808)
..+.+++.+.++|-.++|+++-- |+.. -.....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~---------D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELST---------DPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCC---------Chhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 34455666666666666655321 1111 2233446677777777665532 5667888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 046719 391 RTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQ 470 (808)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 470 (808)
+.|++..|.+.|....+ |..|+..+...|+-+.-..+-....+.|.. | .-.-+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHHHHH
Confidence 88888888888776653 445666666677766555555555555432 2 22234566788888877
Q ss_pred HHHHH
Q 046719 471 ILEEM 475 (808)
Q Consensus 471 ~~~~m 475 (808)
++.+-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 77654
No 353
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.63 E-value=14 Score=36.03 Aligned_cols=100 Identities=15% Similarity=0.190 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhH
Q 046719 131 RLSLDSINVLLECLVRCNQYDRALDLFDEIVCMG---FRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVY 207 (808)
Q Consensus 131 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 207 (808)
+.+..+...++..-....+.+.+...+-+..... ..|+ .+-..+++.| ..-++++++.+...-+.-|+-||.+++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHH-HccChHHHHHHHhCcchhccccchhhH
Confidence 3333344444444444556666666555443210 0111 0111222222 223556666666666666666777777
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHh
Q 046719 208 NVLISGFCKEKKIRDAEKLFDEMCQ 232 (808)
Q Consensus 208 ~~l~~~~~~~g~~~~A~~~~~~m~~ 232 (808)
+.+|+.+.+.+++.+|.++-..|..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7777777777777666666555544
No 354
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=82.34 E-value=1.8 Score=44.67 Aligned_cols=97 Identities=13% Similarity=0.044 Sum_probs=70.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccC
Q 046719 665 IHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYN-SLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLK 742 (808)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g 742 (808)
++-..+.+.++.|..++.++++ +.||...|. .=..++.+.+++..|+.=+.++++ ..|+ ...|..-+.++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhHH
Confidence 4455677889999999999988 678766443 344788888899998888888887 4464 345556667777788
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHH
Q 046719 743 DFGGAYIWYREMFENGFIPSFCIY 766 (808)
Q Consensus 743 ~~~~A~~~~~~~~~~~~~~~~~~~ 766 (808)
.+.+|+..|+......|. ++...
T Consensus 87 ~~~~A~~~l~~~~~l~Pn-d~~~~ 109 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPN-DPDAT 109 (476)
T ss_pred HHHHHHHHHHHhhhcCcC-cHHHH
Confidence 888888888888766544 44433
No 355
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.21 E-value=25 Score=33.80 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=68.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHhcCCHhHHHHHHHHHHHC--CC-CC-CHHHHHH
Q 046719 665 IHCYAEHGDVQKALVLHSEMVDQGIRPDKMT-------YNSLIFGHLREGKLSEVKELVNDMKVK--GL-IP-KADTYNI 733 (808)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~-~p-~~~~~~~ 733 (808)
.+-..+.+++++|+..+.+++.+|...|..+ ...+...|...|++..-.+......+. ++ .| .......
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3445566777777777777777776655433 345667777777665544444332211 01 11 1222334
Q ss_pred HHHHHHc-cCChhHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046719 734 LVKGYCN-LKDFGGAYIWYREMFENGFIPSF-----CIYNELTNGLKQEGKLKEAQILCSEIS 790 (808)
Q Consensus 734 l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~l~~~g~~~~A~~~~~~~~ 790 (808)
|+.-+-. ...++.-+++....++-...... ..-..++..+++.|++.+|+.+++.++
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4443322 23455555555544432222111 122457788999999999998887665
No 356
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.09 E-value=94 Score=35.00 Aligned_cols=28 Identities=25% Similarity=0.188 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHh---cCChHHHHHHHHHHHh
Q 046719 555 VTFNALINGLCK---KGRVMEAEDMLPQITS 582 (808)
Q Consensus 555 ~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 582 (808)
.-+..||..|.+ ..+..+|.+++--+..
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 445566666654 3456666666655554
No 357
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.00 E-value=17 Score=28.93 Aligned_cols=60 Identities=13% Similarity=0.229 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 046719 222 DAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLG 282 (808)
Q Consensus 222 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 282 (808)
+..+-+..+....+.|++....+.+.+|.|.+++..|.++|+.++.. +.+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 55666677777777888888888888888888888888888887654 2222225555443
No 358
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.46 E-value=2.6 Score=27.61 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=13.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHH
Q 046719 733 ILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 733 ~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
.|..+|...|+.+.|.+++++.++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 345555555555555555555554
No 359
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=81.03 E-value=63 Score=32.29 Aligned_cols=85 Identities=18% Similarity=0.041 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--------
Q 046719 675 QKALVLHSEMVDQGIRPDKMTYNSLIFGHLR----EGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLK-------- 742 (808)
Q Consensus 675 ~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-------- 742 (808)
..|...|.++.+.+ +......++..|.. ..+.++|..+|++..+.|. ......+. .+...|
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhh
Confidence 35666666666654 33333344444432 2356677777777666553 23333333 344333
Q ss_pred -------ChhHHHHHHHHHHHCCCCCCHHHH
Q 046719 743 -------DFGGAYIWYREMFENGFIPSFCIY 766 (808)
Q Consensus 743 -------~~~~A~~~~~~~~~~~~~~~~~~~ 766 (808)
+...|..++......++.......
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 275 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFDNACEAL 275 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCChhHHHHH
Confidence 777778888777777666444333
No 360
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.83 E-value=1.8e+02 Score=37.47 Aligned_cols=320 Identities=10% Similarity=0.019 Sum_probs=165.1
Q ss_pred HHHHHHHccCCHhHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 046719 209 VLISGFCKEKKIRDAEKLFDEM----CQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGF 284 (808)
Q Consensus 209 ~l~~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 284 (808)
.+..+-.+++.+.+|...|+.- .+. .-...-|-.+...|...+++|....+...-. -.|+ ....|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~---a~~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRF---ADPS---LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhh---cCcc---HHHHHHHH
Confidence 4445556788999999999883 221 1122334455558999999999998887421 1222 23445566
Q ss_pred HccCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHH
Q 046719 285 CKAKRMEEAKSVCKEMEAHGFDPD-GFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIA 363 (808)
Q Consensus 285 ~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 363 (808)
...|++..|...|+.+...+ |+ ..+++.++......|.+..+.-..+.......+-....++.=+.+-.+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhh
Confidence 78899999999999998763 44 6677777777777788877777655554432111112223334444677777776
Q ss_pred HHHHHHHHHCCCCCCHhhHHHH--HHHHHhcC--CHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHhcCCH
Q 046719 364 EEIVGKEIENGLVPDEVMFNTI--VSGYCRTG--DLNRAMLAIQQMENHGLAP---------NCITFNTLIDKFCELGEM 430 (808)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~ 430 (808)
...+. +. +..+|.+. +....+.. +.-.-.+..+.+.+.-+.| -...|..++....-..--
T Consensus 1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 66654 22 33344433 33332222 2111112333332211110 112233333322211111
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH-HHC----CC-CCCHhhHHHHHHHHHhcCCHHHHH
Q 046719 431 DKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEM-ENS----GM-KPNVVSYGSLINWLCKDCKLLEAE 504 (808)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m-~~~----~~-~~~~~~~~~ll~~~~~~~~~~~A~ 504 (808)
.....+...-.......+..-|..-+..-....+..+-+--+++. ... +. .--..+|....+...+.|+++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 111111100000000111111222221111111122211111111 111 11 112456777777778899999998
Q ss_pred HHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 046719 505 IVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR 548 (808)
Q Consensus 505 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 548 (808)
..+-...+.+ -+..+-..+...-..|+...|+.++++.++.
T Consensus 1691 nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1691 NALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 7766665553 3345566677788899999999999988865
No 361
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.81 E-value=13 Score=29.16 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 046719 711 EVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMF 755 (808)
Q Consensus 711 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 755 (808)
++.+-++.+...++.|++......+.+|.+.+|+.-|+++++-..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555667777777777777777777777777776554
No 362
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=80.80 E-value=1e+02 Score=34.47 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=0.0
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 046719 739 CNLKDFGGAYIWYREMFENGFIPSFCIYNEL 769 (808)
Q Consensus 739 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 769 (808)
.+.|++.+|.+.+-.+++...-|.......|
T Consensus 506 ~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL 536 (566)
T PF07575_consen 506 YDEGDFREAASLLVSLLKSPIAPKSFWPLLL 536 (566)
T ss_dssp -------------------------------
T ss_pred HhhhhHHHHHHHHHHHHCCCCCcHHHHHHHH
Confidence 3457888888877777776666554443333
No 363
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.41 E-value=12 Score=29.40 Aligned_cols=62 Identities=13% Similarity=0.206 Sum_probs=40.4
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 046719 220 IRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLG 282 (808)
Q Consensus 220 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 282 (808)
.-+.++-+..+......|++....+.+++|.|.+|+.-|.++|+.++.. +..+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 3355666666666777788888888888888888888888888776632 2223334544443
No 364
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.33 E-value=84 Score=33.28 Aligned_cols=53 Identities=21% Similarity=-0.033 Sum_probs=39.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 741 LKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 741 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
..+.+.|++.+-+- .|+..-..+-..|+..+...|+|..=-.-.++++++++.
T Consensus 359 rkdpewAikviiks--~~~~nlKeIK~ELVpsli~e~dWnsWsqkAK~ilKk~t~ 411 (711)
T COG1747 359 RKDPEWAIKVIIKS--LGPKNLKEIKQELVPSLIPEGDWNSWSQKAKKILKKSTR 411 (711)
T ss_pred hhChHHHHHHHHHh--cCCccHHHHHHHHHHhhCChhhhhHHHHHHHHHHhcCCc
Confidence 46778888876443 466533567778999999999998777777777777755
No 365
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.06 E-value=61 Score=31.54 Aligned_cols=61 Identities=13% Similarity=-0.020 Sum_probs=48.8
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
+......|..+|.+.+|..+.++++..++- +...+-.|...|...|+-.+|.+-++++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 345566778889999999999888887765 7788888888888889888888888777653
No 366
>PRK11619 lytic murein transglycosylase; Provisional
Probab=79.97 E-value=1.1e+02 Score=34.54 Aligned_cols=447 Identities=9% Similarity=0.015 Sum_probs=210.6
Q ss_pred hhhHHHHHHHHhCCCchHHHHHHHHHHhc------------CCCCCCChhhHHhhhhcc-CCCCCccHHHHHHHHHHcCC
Q 046719 47 NEQVRKIRILFQNNRTEAAQSLIKSIVLS------------NASPFTSPHELFSLFSVS-SPYYKPTFTNILLSILSSAK 113 (808)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~a~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 113 (808)
..........++.|++..+..+...+-.. ......++.++...+... +.|....+...-...+.+.+
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~ 113 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTNFIRANPTLPPARSLQSRFVNELARRE 113 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcc
Confidence 44566778888999999988776543110 000111222333332211 11111122222333455555
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHH
Q 046719 114 LPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFD 193 (808)
Q Consensus 114 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 193 (808)
.+.+.+.++ . ..+.+...-.....++...|+-++|......+-..|.. ....++.++..+.+.|.+.... +..
T Consensus 114 ~w~~~~~~~----~-~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d-~w~ 186 (644)
T PRK11619 114 DWRGLLAFS----P-EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLA-YLE 186 (644)
T ss_pred CHHHHHHhc----C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHH-HHH
Confidence 565555522 1 12455665667777788888877777777666555543 4556677777766666544322 222
Q ss_pred HhhhCCCCCChhhHHHHHHHHHcc------------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCChhHHH
Q 046719 194 GMEKSRTRPNVFVYNVLISGFCKE------------KKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYC--KVGEFEKVS 259 (808)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~a~ 259 (808)
+|...-...+...-..+...+... .+...+..++.. ..|+...-..++.++. ...+.+.|.
T Consensus 187 R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~ 261 (644)
T PRK11619 187 RIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENAR 261 (644)
T ss_pred HHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHH
Confidence 221110011222222222211000 011111111110 1122211122222222 234557777
Q ss_pred HHHHHHHhCC-CCcCH--HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 046719 260 ALRERMKRDK-VEVSL--VMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELS 336 (808)
Q Consensus 260 ~~~~~~~~~~-~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 336 (808)
.++....... ..+.. ..+..+.......+...++...++...... .+......-+......++++.+...+..|.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~ 339 (644)
T PRK11619 262 LMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLP 339 (644)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcC
Confidence 7777764332 22111 233334333333322555666665543322 133334444555557788888888887775
Q ss_pred hCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH-HHHHHHHHHCCCCCCHH
Q 046719 337 GRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRA-MLAIQQMENHGLAPNCI 415 (808)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~ 415 (808)
...- ....-..=+.+++...|+.++|...|..+... ..-|..+... +.|..-.- ...... ....+..+
T Consensus 340 ~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-----~~fYG~LAa~--~Lg~~~~~~~~~~~~-~~~~~~~~-- 408 (644)
T PRK11619 340 MEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-----RGFYPMVAAQ--RLGEEYPLKIDKAPK-PDSALTQG-- 408 (644)
T ss_pred Hhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CCcHHHHHHH--HcCCCCCCCCCCCCc-hhhhhccC--
Confidence 4322 12223333556666678888888888886431 1133333222 12211000 000000 00000000
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHhhHHHHHHH
Q 046719 416 TFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMK--PNVVSYGSLINW 493 (808)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~ 493 (808)
.-..-+..+...|+...|...+..+... .+......+...-.+.|..+.++............ --+..|...+..
T Consensus 409 ~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~ 485 (644)
T PRK11619 409 PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRR 485 (644)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHH
Confidence 1122344566789999999998888764 24445556666666778888777665443221000 012246677777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcchhH
Q 046719 494 LCKDCKLLEAEIVLKDMENRGVLPNAQI 521 (808)
Q Consensus 494 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~ 521 (808)
+.+...++.++-.--...+.+..|+..+
T Consensus 486 ~a~~~~v~~~lv~ai~rqES~f~p~a~S 513 (644)
T PRK11619 486 YTSGKGIPQSYAMAIARQESAWNPKARS 513 (644)
T ss_pred HHHHcCCCHHHHHHHHHHhcCCCCCCcc
Confidence 7776666666543333345666776554
No 367
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.99 E-value=1.9 Score=42.36 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=83.6
Q ss_pred cC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHH
Q 046719 637 EG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKE 714 (808)
Q Consensus 637 ~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~ 714 (808)
.| +++|.+.|...+..+ ++....|..-..++.+.++...|++-+...++ +.||.. -|-.-..+....|++++|..
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHHH
Confidence 45 888999998888864 55566777777888899999999999998888 677765 56566667777889999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 715 LVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 715 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
.+....+.++.+....| +-...-..+..++-...+++..+
T Consensus 204 dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 204 DLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHH
Confidence 99999887665544433 33334445555555556666554
No 368
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.98 E-value=33 Score=29.05 Aligned_cols=66 Identities=17% Similarity=0.286 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 692 DKMTYNSLIFGHLREGK---LSEVKELVNDMKVKGLIP--KADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
...+-..+.|++.+..+ ..+.+.+++.+.+. -.| .......|.-++.+.+++++++++.+..++..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 33344455555555443 33444555555541 122 12333344455556666666666666666543
No 369
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.98 E-value=17 Score=38.90 Aligned_cols=46 Identities=15% Similarity=0.052 Sum_probs=26.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046719 425 CELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEME 476 (808)
Q Consensus 425 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 476 (808)
.+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|.+..
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 34566666665554432 44556666666666666666666665543
No 370
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.66 E-value=3.2 Score=24.06 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=17.9
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 730 TYNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 730 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
.|..++.++...|++++|...++++++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4455666666667777777766666654
No 371
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.60 E-value=20 Score=32.87 Aligned_cols=21 Identities=14% Similarity=-0.028 Sum_probs=9.2
Q ss_pred CHHHHHHHHHHHHhcCChHHH
Q 046719 553 TLVTFNALINGLCKKGRVMEA 573 (808)
Q Consensus 553 ~~~~~~~l~~~~~~~g~~~~A 573 (808)
|+..+.+|+..+.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444433
No 372
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.99 E-value=12 Score=34.52 Aligned_cols=64 Identities=19% Similarity=0.123 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
|.+.-+..+.+.+.+.+|+...+.-++. .| |..+-..+...+|-.|+|++|..-++-+-+..++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 4556677888999999999999987774 45 6667778999999999999999998888776544
No 373
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.76 E-value=1.3e+02 Score=33.96 Aligned_cols=42 Identities=10% Similarity=0.247 Sum_probs=21.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 046719 244 TLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCK 286 (808)
Q Consensus 244 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 286 (808)
.+|--|.|+|++++|.++..+.... .......+...+..|+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHh
Confidence 4555556777777777666443322 23333445555555544
No 374
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.70 E-value=31 Score=31.90 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=26.4
Q ss_pred HHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 046719 631 LSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVD 686 (808)
Q Consensus 631 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 686 (808)
++.+.+.+ +.++..+.++-++.. +.|...-..+.+.|+-.|++++|..-++-.-+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 34444444 555555555444432 33333444455555555555555555544443
No 375
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.39 E-value=3.1 Score=23.49 Aligned_cols=21 Identities=19% Similarity=0.010 Sum_probs=12.2
Q ss_pred HHHHHHHHccCChhHHHHHHH
Q 046719 732 NILVKGYCNLKDFGGAYIWYR 752 (808)
Q Consensus 732 ~~l~~~~~~~g~~~~A~~~~~ 752 (808)
..++.++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 445556666666666665554
No 376
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=76.08 E-value=14 Score=29.06 Aligned_cols=55 Identities=13% Similarity=-0.019 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChh
Q 046719 726 PKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP-SFCIYNELTNGLKQEGKLK 780 (808)
Q Consensus 726 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~g~~~ 780 (808)
.|......+...+...|++++|++.+-++++.+... +...-..++..+...|.-+
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 356777788888888999999999888888765433 4555566677776666644
No 377
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.98 E-value=4.4 Score=26.56 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=16.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 046719 768 ELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 768 ~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
.|+.+|.+.|+.+.|..++++++.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 456667777777777777777764
No 378
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=75.25 E-value=66 Score=30.48 Aligned_cols=37 Identities=22% Similarity=0.444 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCH
Q 046719 656 PDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIR-PDK 693 (808)
Q Consensus 656 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-pd~ 693 (808)
.|.+....+++ +...|+++.|+++.+-+++.|.+ |+.
T Consensus 82 qd~Vl~~~mvW-~~D~Gd~~~AL~ia~yAI~~~l~~Pd~ 119 (230)
T PHA02537 82 QDDVLMTVMVW-RFDIGDFDGALEIAEYALEHGLTMPDQ 119 (230)
T ss_pred CCCeeeEeeee-eeeccCHHHHHHHHHHHHHcCCCCCcc
Confidence 34433344443 35689999999999999998765 443
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.60 E-value=10 Score=28.44 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=21.7
Q ss_pred ccCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHH
Q 046719 740 NLKDFGGAYIWYREMFENGFIPS--FCIYNELTNGLKQEGKLKEAQILC 786 (808)
Q Consensus 740 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~g~~~~A~~~~ 786 (808)
..++.++|+..|+++++.-.++. ..++-.|+.+|...|++++++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555433321 122333444555555555555443
No 380
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.32 E-value=1.2e+02 Score=31.82 Aligned_cols=120 Identities=9% Similarity=0.051 Sum_probs=64.8
Q ss_pred hcCChhHHH-HHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHH
Q 046719 251 KVGEFEKVS-ALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVM 329 (808)
Q Consensus 251 ~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 329 (808)
..|+.-.|- +++..+....-.|+.+...+.| +...|+++.+.+.+....+. +.....+...+++...+.|+++.|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 445554443 3344444333344444433333 34567777777766655432 2334556666777777777777777
Q ss_pred HHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 046719 330 ALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENG 374 (808)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 374 (808)
.+-+.|+...+.... +........-..|-++++...+.++...+
T Consensus 378 s~a~~~l~~eie~~e-i~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIEDEE-VLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccCChh-heeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 777777766554222 22222222334566777777777766543
No 381
>PHA02875 ankyrin repeat protein; Provisional
Probab=74.29 E-value=1.2e+02 Score=32.09 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=8.0
Q ss_pred HHHHHhcCChhHHHHHH
Q 046719 246 VDGYCKVGEFEKVSALR 262 (808)
Q Consensus 246 i~~~~~~g~~~~a~~~~ 262 (808)
+...++.|+.+.+..++
T Consensus 72 L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 72 LHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 33444555555544444
No 382
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=72.46 E-value=8.4 Score=39.98 Aligned_cols=100 Identities=10% Similarity=0.155 Sum_probs=73.2
Q ss_pred HHHcC-HHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHh
Q 046719 634 CIREG-IVAVEKLFNEMLQINLVPDLLV-YNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLS 710 (808)
Q Consensus 634 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~ 710 (808)
....+ ++.|..++.++++. .|+... |..-..++.+.+++..|+.=+.++++ ..|... .|..=+.++...+.+.
T Consensus 14 ~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhHHHHH
Confidence 34455 88899999999984 565444 44444788899999999998888888 456554 5666677788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 711 EVKELVNDMKVKGLIPKADTYNILVKGYC 739 (808)
Q Consensus 711 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 739 (808)
+|...|+.... +.|+..-....+.-|-
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 99988888877 7787666555555543
No 383
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=72.42 E-value=8.4 Score=35.64 Aligned_cols=57 Identities=23% Similarity=0.121 Sum_probs=38.4
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 702 GHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 702 ~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
...+.|+.+.|.+++.++.+ +.| ...+|..++..-.+.|+++.|.+.|++.++.++.
T Consensus 4 ~~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 34456677777777777766 445 3556777777777777777777777777776555
No 384
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=72.36 E-value=13 Score=29.54 Aligned_cols=55 Identities=16% Similarity=0.064 Sum_probs=32.6
Q ss_pred HccCChhHHHHHHHHHHHCCCCC---C-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 739 CNLKDFGGAYIWYREMFENGFIP---S-----FCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 739 ~~~g~~~~A~~~~~~~~~~~~~~---~-----~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
.+.||+.+|.+.+.+..+....- . ......++......|++++|...+++++..-
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45677777766665555421111 1 2233455666777788888888887777643
No 385
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=72.25 E-value=1.7e+02 Score=32.72 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=19.8
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 670 EHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREG 707 (808)
Q Consensus 670 ~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g 707 (808)
..+..+.|.+.|++.-+ +.|...+-..+...+...|
T Consensus 299 Da~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 299 DAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred chhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh
Confidence 34556667777777766 5666554333333333333
No 386
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=72.18 E-value=31 Score=27.32 Aligned_cols=78 Identities=12% Similarity=0.052 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 046719 673 DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYR 752 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 752 (808)
..+||..+-+-+...+-. ...+--.-+..+...|+|++|..+.+.. ..||...|..|.. .+.|--+++...+-
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 355666655555443211 1111112233455666666666555443 3455555544432 34555555555555
Q ss_pred HHHHC
Q 046719 753 EMFEN 757 (808)
Q Consensus 753 ~~~~~ 757 (808)
++-..
T Consensus 93 rla~s 97 (115)
T TIGR02508 93 RLAAS 97 (115)
T ss_pred HHHhC
Confidence 55443
No 387
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=72.16 E-value=12 Score=25.75 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=15.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 733 ILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 733 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
.++-++.+.|++++|.++.+.+++..|.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 4445556666666666666666665443
No 388
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=71.95 E-value=49 Score=26.42 Aligned_cols=40 Identities=10% Similarity=0.073 Sum_probs=15.6
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046719 472 LEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDME 511 (808)
Q Consensus 472 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 511 (808)
++.+....+.|++.+..+.+.+|.+.+++.-|..+|+..+
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444443
No 389
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.41 E-value=10 Score=28.47 Aligned_cols=46 Identities=4% Similarity=-0.015 Sum_probs=21.5
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChhHHHHH
Q 046719 705 REGKLSEVKELVNDMKVKGLIPK--ADTYNILVKGYCNLKDFGGAYIW 750 (808)
Q Consensus 705 ~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 750 (808)
...+.++|+..|++.+++-..+. ..++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555554322211 12334455555555555555544
No 390
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=69.86 E-value=2.5 Score=36.84 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=21.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHH
Q 046719 247 DGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVC 297 (808)
Q Consensus 247 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 297 (808)
..+.+.+..+....+++.+...+...+....+.++..|++.++.++..+++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 333334444444444444444333334444444444444444444444443
No 391
>PRK10941 hypothetical protein; Provisional
Probab=69.50 E-value=51 Score=32.28 Aligned_cols=63 Identities=11% Similarity=-0.076 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
.+.+-.+|.+.++++.|....+.++. +.|+ +.-+.-.+-.|.+.|.+..|..=++..++..|+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 34566667777777777777777776 4453 444555666677777777777777777766554
No 392
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.08 E-value=51 Score=26.20 Aligned_cols=79 Identities=14% Similarity=0.117 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 046719 184 DLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRE 263 (808)
Q Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 263 (808)
..++|.-+-+.+...+.. ...+--+-+..+...|+|++|..+.+.+ +.||...|-+|.. .|.|-.+++..-+-
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 456666666666554322 2223333344566777777777776655 3577777766544 36666666666666
Q ss_pred HHHhCC
Q 046719 264 RMKRDK 269 (808)
Q Consensus 264 ~~~~~~ 269 (808)
+|...|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 665544
No 393
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=67.44 E-value=3.6 Score=35.90 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=33.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHH
Q 046719 280 LLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYE 333 (808)
Q Consensus 280 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 333 (808)
+|..+.+.+..+....+++.+...+...+....+.++..|++.++.+....+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 445555666667777777777665544556666777777777766666666555
No 394
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=65.85 E-value=30 Score=35.96 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHH--HCC----CCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMK--VKG----LIP-KADTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~g----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
...|++.++-.|++..|++.++.+. +++ +.+ ...++..++.+|.-.+++.+|++.|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777888888887777642 111 111 234566777777777777777777777653
No 395
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=65.58 E-value=1.2e+02 Score=28.54 Aligned_cols=36 Identities=17% Similarity=0.372 Sum_probs=20.3
Q ss_pred cCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC
Q 046719 272 VSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPD 308 (808)
Q Consensus 272 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 308 (808)
|.+.....++..| ..+++++|.++++++-+.|..|.
T Consensus 237 PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 237 PHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred CChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHH
Confidence 4444444444433 34566667777766666666553
No 396
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.26 E-value=1.9e+02 Score=30.66 Aligned_cols=148 Identities=12% Similarity=0.063 Sum_probs=62.6
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHh---hHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhc--HHHHHHHHH
Q 046719 281 LGGFCKAKRMEEAKSVCKEMEAHGFDPDGF---TYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYT--CSILLNALC 355 (808)
Q Consensus 281 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 355 (808)
+...+..|+.+.+..+++ .|...+.. .-.+.+...+..|+.+ +.+.+.+.|..++... -...+...+
T Consensus 72 L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~ 143 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAV 143 (413)
T ss_pred HHHHHHCCCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHH
Confidence 444556677665554443 33211110 0112333344555554 3334444454443221 122344555
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCC
Q 046719 356 KEGKVEIAEEIVGKEIENGLVPDE---VMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCIT---FNTLIDKFCELGE 429 (808)
Q Consensus 356 ~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~ 429 (808)
..|+.+-+..++ +.|..++. .-++ .+...+..|+.+ +++.+.+.|..++... ..+++...+..|+
T Consensus 144 ~~~~~~~v~~Ll----~~g~~~~~~d~~g~T-pL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~ 214 (413)
T PHA02875 144 MMGDIKGIELLI----DHKACLDIEDCCGCT-PLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNK 214 (413)
T ss_pred HcCCHHHHHHHH----hcCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCC
Confidence 667665444333 33333221 1122 223334455544 3344455555554332 1234443445555
Q ss_pred HHHHHHHHHHHHHcCCCCCH
Q 046719 430 MDKAEEWVKRMLEKGVSPNV 449 (808)
Q Consensus 430 ~~~A~~~~~~~~~~~~~~~~ 449 (808)
.+- .+.+.+.|..++.
T Consensus 215 ~~i----v~~Ll~~gad~n~ 230 (413)
T PHA02875 215 IDI----VRLFIKRGADCNI 230 (413)
T ss_pred HHH----HHHHHHCCcCcch
Confidence 543 3334445655553
No 397
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=65.17 E-value=1.8e+02 Score=30.20 Aligned_cols=135 Identities=11% Similarity=0.050 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHH-------CCC------------------CCCHHHHH---HHHHHHHhcCC
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVD-------QGI------------------RPDKMTYN---SLIFGHLREGK 708 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~g~------------------~pd~~~~~---~l~~~~~~~g~ 708 (808)
.+.++..+...+...|+.+.|.+++++++- ..+ .-|...|. ..+..+.+.|.
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 344555555666666666666666655531 011 01222233 34667888999
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCh--
Q 046719 709 LSEVKELVNDMKVKGLIPKADTYNILVKGYC-NLKDFGGAYIWYREMFENG------FIPSFCIYNELTNGLKQEGKL-- 779 (808)
Q Consensus 709 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~l~~~g~~-- 779 (808)
+.-|.++.+-+...+..-|+......++.|+ +.++++--+++++...... .-|+.. ..++-++...++.
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a--~S~aLA~~~l~~~~~ 196 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFA--FSIALAYFRLEKEES 196 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHH--HHHHHHHHHhcCccc
Confidence 9999999999888543335666556666654 6788888888888765421 122322 3344455556665
Q ss_pred -------------hHHHHHHHHHHHcC
Q 046719 780 -------------KEAQILCSEISIVG 793 (808)
Q Consensus 780 -------------~~A~~~~~~~~~~~ 793 (808)
++|...+.+++..-
T Consensus 197 ~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 197 SQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred cccccccccccchhHHHHHHHHHHHHh
Confidence 77777777766543
No 398
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.91 E-value=1.1e+02 Score=36.12 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=49.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH----HHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK----MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA----DTY 731 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~ 731 (808)
.|...++.+-+.+-.+++.++-..+++. +++|. .+++.+.+-+...|.+.+|...+-+ .||. ...
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcL 1057 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCL 1057 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHH
Confidence 4556677777778888888887777774 44432 2566666777777777777655433 2332 334
Q ss_pred HHHHHHHHccCChh
Q 046719 732 NILVKGYCNLKDFG 745 (808)
Q Consensus 732 ~~l~~~~~~~g~~~ 745 (808)
..++..++.+|+++
T Consensus 1058 RqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1058 RQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHHhccchH
Confidence 45666666776654
No 399
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=63.66 E-value=1.5e+02 Score=28.89 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHH----CCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----H
Q 046719 658 LLVYNALIHCYAEHGDVQKALVLHSEMVD----QGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK----A 728 (808)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~ 728 (808)
...+..+..-|++.++.+.+.+...+..+ .|.+-|+. +-..|+..|....-.++-++..+.+.++|..-+ -
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 45666777778888888888776665543 35555654 344555566666667777888888888775433 2
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
.+|..+. +....++.+|-.++-+.+.
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 2333222 2234567778777777664
No 400
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.18 E-value=1.5e+02 Score=28.45 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=60.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHC---CCC--cCHHhHHHHHHHHHHcC
Q 046719 567 KGRVMEAEDMLPQITSSGLNPDV---ITYNSLISGYSSLGSSQKCLELYENMKKL---GIK--PSLRTYHPLLSGCIREG 638 (808)
Q Consensus 567 ~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~--p~~~~~~~l~~~~~~~~ 638 (808)
...+++|+.-|++.++..-.... .+.-.++..+.+.+++++..+.|.++... .+. -+..+.+.++...+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34688888888888763212122 23455677778888888888888877532 111 12334444444433333
Q ss_pred -HHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 046719 639 -IVAVEKLFNEMLQ----I-NLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVD 686 (808)
Q Consensus 639 -~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 686 (808)
.+-..++|+.-++ . +-..-.-+-..|...|...|.+..-.++++++..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 3333333332221 0 0001112223455555555555555555555544
No 401
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=61.91 E-value=98 Score=30.09 Aligned_cols=87 Identities=14% Similarity=0.162 Sum_probs=47.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-----
Q 046719 421 IDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLC----- 495 (808)
Q Consensus 421 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~----- 495 (808)
|.++...+++.++..+.-+--+..-+....+...-|-.|.|.++...+.++-.......-.-+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 566777777777776655443321122233444455567777777777777666654321222333555544443
Q ss_pred hcCCHHHHHHHH
Q 046719 496 KDCKLLEAEIVL 507 (808)
Q Consensus 496 ~~~~~~~A~~~~ 507 (808)
-.|.+.+|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666666554
No 402
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=61.75 E-value=3.5e+02 Score=32.43 Aligned_cols=261 Identities=11% Similarity=-0.005 Sum_probs=143.7
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 046719 517 PNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLI 596 (808)
Q Consensus 517 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 596 (808)
+|+.+-...+..+.+.+.. ++...+..+++. ++..+-...+.++.+.+........+..++.. +|...-...+
T Consensus 633 ~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~ 705 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAAL 705 (897)
T ss_pred CCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHH
Confidence 4666666666666666653 345555555543 24444444445554433211122233333332 4555444555
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 046719 597 SGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQ 675 (808)
Q Consensus 597 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 675 (808)
..+...+..+ .. .+-+..+ .+|...-...+.++...+ .+. +..+. ..++...-...+.++...+..+
T Consensus 706 ~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 706 DVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhcccc
Confidence 5554433211 11 2222322 345544455555555544 221 22222 2455556666666777666543
Q ss_pred H-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 046719 676 K-ALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREM 754 (808)
Q Consensus 676 ~-A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 754 (808)
. +...+..+.. .+|...-...+.++...|..+.+...+..+++ .++..+-...+.++.+.+. +++...+..+
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~ 846 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEA 846 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHH
Confidence 2 3455555554 45666777888888888876655555555554 3566666667777777765 5677777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCchhhhHhhh
Q 046719 755 FENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWTNEDQSAVA 806 (808)
Q Consensus 755 ~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 806 (808)
++ +|+..+-...+++|.+.+...++...+.++++..-..+-.+...+++
T Consensus 847 L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 847 LT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred hc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 64 46778888888888886434577777777777544344455555554
No 403
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.73 E-value=3.2e+02 Score=31.98 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=20.3
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHh
Q 046719 206 VYNVLISGFCKEKKIRDAEKLFDEMCQ 232 (808)
Q Consensus 206 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 232 (808)
-|..|+..|...|+.++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 466777777778888888888877765
No 404
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.23 E-value=3.2e+02 Score=31.92 Aligned_cols=39 Identities=8% Similarity=0.211 Sum_probs=24.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046719 388 GYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCE 426 (808)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 426 (808)
.|+.....+-++..++.+....-.++....+.++..|++
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 455666666677777777665555566666666666654
No 405
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.50 E-value=1e+02 Score=30.01 Aligned_cols=89 Identities=11% Similarity=0.086 Sum_probs=48.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHc--
Q 046719 139 VLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCK-- 216 (808)
Q Consensus 139 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 216 (808)
.=|.+++..+++.+++.+.-+.-...-+........=|-.|.+.|.+..+.++-..-++..-..+...|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 446677777777777766544322211112223333344467777777777777766654333334445555554443
Q ss_pred ---cCCHhHHHHHH
Q 046719 217 ---EKKIRDAEKLF 227 (808)
Q Consensus 217 ---~g~~~~A~~~~ 227 (808)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 46666666554
No 406
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=59.90 E-value=1.8e+02 Score=28.50 Aligned_cols=25 Identities=16% Similarity=0.013 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLH 681 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~ 681 (808)
|+.....++..|.+.|++.+|..+|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5677888888899999998888765
No 407
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=59.79 E-value=1.7e+02 Score=29.31 Aligned_cols=118 Identities=14% Similarity=0.018 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH------ccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYA------EHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSE 711 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~ 711 (808)
.+++..++++....+ .|-.......|.++- ..-+|..-..+|+-+.. +.|+.+ +.|--+ +..+..-.+.
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAV-Ala~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAV-ALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHH-HHHHhhhHHh
Confidence 667777777776665 355555555544431 12356666677776666 455554 444333 3333333555
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 712 VKELVNDMKVKG-LIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 712 A~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
++...+-+.+.+ +.--...+..-+..+.+.|+.++|...|++++.....
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~ 397 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARN 397 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
Confidence 666666655432 1111222334566667777777777777777765433
No 408
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=59.08 E-value=1.1e+02 Score=30.65 Aligned_cols=65 Identities=14% Similarity=0.248 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHC---CCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCHH-HHHHHHHHH
Q 046719 639 IVAVEKLFNEMLQI---NLVPDLLVY--NALIHCYAEHGDVQKALVLHSEMVD-----QGIRPDKM-TYNSLIFGH 703 (808)
Q Consensus 639 ~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~pd~~-~~~~l~~~~ 703 (808)
.++|.+..+++.+. .-.|+.+.| ...+..+...|+..++.++++...+ -|++|++. .|+.+..-|
T Consensus 91 ~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqY 166 (380)
T KOG2908|consen 91 KDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQY 166 (380)
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHH
Confidence 55555555555431 123444333 2334444555666666666555554 34444444 344444333
No 409
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=58.76 E-value=85 Score=26.54 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 046719 746 GAYIWYREMFENGFIP-SFCIYNELTNGLKQEGKLKEAQILCSE 788 (808)
Q Consensus 746 ~A~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~g~~~~A~~~~~~ 788 (808)
++.++|+.|...|+-. .+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5555555555544322 344455555555566666666655554
No 410
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.62 E-value=2.5e+02 Score=29.82 Aligned_cols=85 Identities=9% Similarity=-0.101 Sum_probs=48.6
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 046719 706 EGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKD-----FGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLK 780 (808)
Q Consensus 706 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 780 (808)
.++.+.|+.++.+|++.|..|....-..+..++...|. ..-|...++.....|.+.........+-.++.+-+..
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~~~l~~~~~~l~~~pksn 322 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALAQAVIYLALAPKSN 322 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCCcc
Confidence 36778888888888887777765555555555444442 2233444444445565533444444444456666666
Q ss_pred HHHHHHHHHH
Q 046719 781 EAQILCSEIS 790 (808)
Q Consensus 781 ~A~~~~~~~~ 790 (808)
.+...++++.
T Consensus 323 ~~~~a~~~a~ 332 (413)
T PRK13342 323 AAYTAINAAL 332 (413)
T ss_pred HHHHHHHHHH
Confidence 6655555544
No 411
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=58.52 E-value=1.2e+02 Score=29.96 Aligned_cols=147 Identities=13% Similarity=0.041 Sum_probs=77.8
Q ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046719 627 YHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLRE 706 (808)
Q Consensus 627 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~ 706 (808)
+.++-.+....+..+-.+.-...++ +.|.-.+-..| -+--.+.-+.+|.++|++.++.| ..+|+ --..+...
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALe--IN~eCA~AyvL-LAEEEa~Ti~~AE~l~k~ALka~----e~~yr-~sqq~qh~ 259 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALE--INNECATAYVL-LAEEEATTIVDAERLFKQALKAG----ETIYR-QSQQCQHQ 259 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHh--cCchhhhHHHh-hhhhhhhhHHHHHHHHHHHHHHH----HHHHh-hHHHHhhh
Confidence 4444444444443333333344444 23332222111 12334456788899999888753 23443 22233333
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHH
Q 046719 707 GKLSEVKELVNDMKVKGLIPKADTYN--ILVKGYCNLKDFGGAYIWYREMFENGFIPS-FCIYNELTNGLKQEGKLKEAQ 783 (808)
Q Consensus 707 g~~~~A~~~~~~~~~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~g~~~~A~ 783 (808)
|...+| +.+. ..|..+|. .|.-+..+.|+..+|.+.++.+.+.-+-.+ ..+...|++++.+..-+.+..
T Consensus 260 ~~~~da------~~rR--Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvq 331 (556)
T KOG3807|consen 260 SPQHEA------QLRR--DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQ 331 (556)
T ss_pred ccchhh------hhhc--ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332 2232 23444554 566677789999999999999876533211 244557788888775555555
Q ss_pred HHHHHH
Q 046719 784 ILCSEI 789 (808)
Q Consensus 784 ~~~~~~ 789 (808)
.++-+-
T Consensus 332 avLakY 337 (556)
T KOG3807|consen 332 AVLAKY 337 (556)
T ss_pred HHHHhh
Confidence 444443
No 412
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.77 E-value=50 Score=30.55 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 724 LIPKADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 724 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
..|++.++..++.++...|+.++|..+.+++...-
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45666666666666666666666666666666543
No 413
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=57.23 E-value=2.3e+02 Score=28.87 Aligned_cols=116 Identities=11% Similarity=0.127 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc---cCChhHHHH
Q 046719 675 QKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCN---LKDFGGAYI 749 (808)
Q Consensus 675 ~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~---~g~~~~A~~ 749 (808)
+.-+.+++++++. .| +...+..++..+.+....++..+-+++++.. .| +...|...+..... .-.+++...
T Consensus 48 E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 48 ERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 3344455555553 22 2224444455555555555555555555542 22 34444444433322 113344444
Q ss_pred HHHHHHHC------CC------CCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 046719 750 WYREMFEN------GF------IPS-----FCIYNELTNGLKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 750 ~~~~~~~~------~~------~~~-----~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
.|.++++. +. .++ ..++..+...+.++|-.+.|..++..+++.+.
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 44444321 10 000 12344556667888888888888888888764
No 414
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=55.78 E-value=41 Score=20.90 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=9.2
Q ss_pred HHHHHHHHhcCChhHHHHH
Q 046719 767 NELTNGLKQEGKLKEAQIL 785 (808)
Q Consensus 767 ~~l~~~l~~~g~~~~A~~~ 785 (808)
..++-.+..+|++++|.++
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3444455555555555555
No 415
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=55.64 E-value=2.1e+02 Score=28.12 Aligned_cols=59 Identities=10% Similarity=0.089 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHH
Q 046719 446 SPNVKTNNTLIDGYGRMGHFDKCFQILEEMENS-GMKPNVVSYGSLINWLCKDCKLLEAE 504 (808)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~A~ 504 (808)
.++..+...++..+++.+++.+-.+.++..... +...|...|...|......|+..-..
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ 258 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMR 258 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHH
Confidence 344445555555555555555555555554433 33334555555555555555544333
No 416
>PF13934 ELYS: Nuclear pore complex assembly
Probab=55.29 E-value=1.9e+02 Score=27.50 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=70.3
Q ss_pred HHHHHHHH--HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 661 YNALIHCY--AEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGY 738 (808)
Q Consensus 661 ~~~l~~~~--~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 738 (808)
+...++++ ...+++++|++.+-.- .+.|+.. ..++.++...|+.+.|..+++...- ...+......+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p--~l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGP--PLSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCC--CCCCHHHHHHHHHH-
Confidence 34444554 3457888888876332 1223322 2467777778999999888887532 11223333333333
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 739 CNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 739 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
..++.+.||..+.+...+.. ....+..++..+..... + ...++++++.+.+.-+
T Consensus 151 La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~~--~-~~~~~~Ll~LPl~~~E 204 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEECA--R-SGRLDELLSLPLDEEE 204 (226)
T ss_pred HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHhh--h-hhHHHHHHhCCCChHH
Confidence 56789999988777754311 13455566666554433 1 2336667776666544
No 417
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.22 E-value=42 Score=26.53 Aligned_cols=53 Identities=17% Similarity=0.055 Sum_probs=31.4
Q ss_pred HhcCCHhHHHHHHHHHHHCC---CCCC-----HHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 704 LREGKLSEVKELVNDMKVKG---LIPK-----ADTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 704 ~~~g~~~~A~~~~~~~~~~g---~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
.+.|++.+|.+.+.+..+.. ..+. ......++......|++++|...++++++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566666655544443211 1111 22334566667788999999999998876
No 418
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=54.36 E-value=89 Score=26.10 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=30.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 713 KELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 713 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
.+-++.+...++.|++.....-+.+|.+.+|+..|..+++-...
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445555666777777777777777777777777777766543
No 419
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=54.26 E-value=32 Score=20.00 Aligned_cols=28 Identities=18% Similarity=0.094 Sum_probs=13.9
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 742 KDFGGAYIWYREMFENGFIPSFCIYNELT 770 (808)
Q Consensus 742 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 770 (808)
|+.+.|..+|+++++..+. +...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~-~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPK-SVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC-ChHHHHHHH
Confidence 3455555566665554432 444444433
No 420
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.38 E-value=35 Score=24.48 Aligned_cols=28 Identities=36% Similarity=0.368 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046719 763 FCIYNELTNGLKQEGKLKEAQILCSEIS 790 (808)
Q Consensus 763 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 790 (808)
......++.+|...|++++|.++++++.
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334445555555555555555555554
No 421
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=53.18 E-value=1.5e+02 Score=27.83 Aligned_cols=101 Identities=19% Similarity=0.144 Sum_probs=63.9
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH
Q 046719 654 LVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP---DKMTY--NSLIFGHLREGKLSEVKELVNDMKVKGLIPKA 728 (808)
Q Consensus 654 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---d~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 728 (808)
..++..-+|.|+--|.-...+.+|-+.|..- .|+.| |..++ ..-+......|+.++|++..+.+--.=+..|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 4566666677766665555566666666543 34554 33333 35677778999999999999987432234454
Q ss_pred HHHHHHH----HHHHccCChhHHHHHHHHHHH
Q 046719 729 DTYNILV----KGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 729 ~~~~~l~----~~~~~~g~~~~A~~~~~~~~~ 756 (808)
..+..|. --+.+.|..++|+++.+.-+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 3433332 224678889999999887654
No 422
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.16 E-value=94 Score=26.29 Aligned_cols=45 Identities=22% Similarity=0.127 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHH
Q 046719 710 SEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREM 754 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 754 (808)
+.+.++|+.|..+|+--. +..|...+..+...|++++|.++|+..
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 377888888877776554 455667777778888888888887764
No 423
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.14 E-value=2.8e+02 Score=28.18 Aligned_cols=127 Identities=16% Similarity=0.031 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCh----hhH
Q 046719 132 LSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNV----FVY 207 (808)
Q Consensus 132 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~ 207 (808)
|++++...+++-|....+.+.-+.+-... ..+++.+-.++.+.+.+....+...+.+.. ..|.. ...
T Consensus 73 ~~~~~li~~~~~FV~~~n~eqlr~as~~f--------~~lc~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~H 143 (422)
T KOG2582|consen 73 PDPETLIELLNDFVDENNGEQLRLASEIF--------FPLCHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSIH 143 (422)
T ss_pred CCHHHHHHHHHHHHHhcChHHHhhHHHHH--------HHHHHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhhH
Confidence 56666667777777666644433222211 224555555666666655544444443332 11111 122
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHh----CC--CCCCHHH-HHHHH-HHHHhcCChhHHHHHHHHHHh
Q 046719 208 NVLISGFCKEKKIRDAEKLFDEMCQ----RK--LVPTRVT-YNTLV-DGYCKVGEFEKVSALRERMKR 267 (808)
Q Consensus 208 ~~l~~~~~~~g~~~~A~~~~~~m~~----~~--~~p~~~~-~~~li-~~~~~~g~~~~a~~~~~~~~~ 267 (808)
..++..+.+.+++.-++..++.-.. .. ..|.... |..-. -.|....++|.|..+++...-
T Consensus 144 ~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 144 ADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred HHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 3344444455666555544432211 11 1111111 11100 113356688888888887754
No 424
>PF13934 ELYS: Nuclear pore complex assembly
Probab=50.90 E-value=2.3e+02 Score=27.02 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=60.1
Q ss_pred HHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 046719 137 INVLLEC--LVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGF 214 (808)
Q Consensus 137 ~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (808)
+...+++ +...+++++|...+-.- .....-...++.++...|+.+.|+.+++.+.-. ..+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p-----s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP-----SLIPWFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC-----CCCcccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-
Confidence 3444554 45567777777776222 111122235888888889999999998886432 1223333444444
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 046719 215 CKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCK 251 (808)
Q Consensus 215 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 251 (808)
..++.+.+|..+-+...+.. ....+..++..+..
T Consensus 151 La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLE 184 (226)
T ss_pred HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHH
Confidence 56688888888776654421 13355556655543
No 425
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.59 E-value=61 Score=31.46 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=31.3
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 046719 733 ILVKGYCNLKDFGGAYIWYREMFEN----GF-IPSFCIYNELTNGLKQEGKLKEAQILCSEI 789 (808)
Q Consensus 733 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 789 (808)
.++.-|.+.|++++|.++|+.+... |- .+...+...+..|....|+.++...+.=++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4555566666666666666665421 11 223344455566666666666666655444
No 426
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=50.39 E-value=2.2e+02 Score=27.13 Aligned_cols=95 Identities=13% Similarity=-0.019 Sum_probs=66.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHC------CCCCCHH-----------HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 046719 665 IHCYAEHGDVQKALVLHSEMVDQ------GIRPDKM-----------TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK 727 (808)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~~~~~------g~~pd~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 727 (808)
.+-+.+.|++.+|..-|.+++.. .-+|... .+..+..++...|++-++++....++.. -+-|
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~-~~~n 263 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH-HPGN 263 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc-CCch
Confidence 34456777877777766655421 1233322 2334556677788999999999998874 2346
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 728 ADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 728 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
...|..-+.+....=+.++|..=+.++++..|.
T Consensus 264 vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 264 VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 778888888888888889999999999987554
No 427
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=50.17 E-value=43 Score=31.30 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=48.0
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 046719 667 CYAEHGDVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK 727 (808)
Q Consensus 667 ~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 727 (808)
+..+.|+.+.|.+++.++.+ +.|+ ...|..++...-+.|+++.|.+.+++..+ +.|+
T Consensus 4 ~~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~--ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE--LDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc--CCcc
Confidence 45678999999999999998 5564 45899999999999999999999999988 5553
No 428
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=49.93 E-value=2.8e+02 Score=27.76 Aligned_cols=96 Identities=17% Similarity=0.114 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQ----GIRPDKMT-YNSLIFGHLREGKLSEVKELVNDMKVKGLIPK----AD 729 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~pd~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~ 729 (808)
..+-....-|++-|+.+.|++.+.+..++ |.+-|++. ...++-.|....-..+-++-.+.+.+.|..-+ ..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 45556677899999999999887776553 66777763 33556666666667777777788888775543 23
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 730 TYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 730 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
+|..+- |....++.+|-.+|-+.+.
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 444332 2345789999998888764
No 429
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=49.33 E-value=5.4e+02 Score=30.86 Aligned_cols=261 Identities=11% Similarity=0.017 Sum_probs=148.0
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 046719 481 KPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNAL 560 (808)
Q Consensus 481 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 560 (808)
.+|..+-...+..+.+.+.. ++...+..+.+. ++...-...+.++.+.+........+..++.. +|..+-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 45666666667777666653 344444444432 24444444445554433221122233334432 466666666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC--
Q 046719 561 INGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-- 638 (808)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-- 638 (808)
+..+...+..+ .. .+-.+.+ .+|...-...+.++.+.+..+. +..... .++...-.....++...+
T Consensus 705 ~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccc
Confidence 66666544222 22 2333333 4566666666666666555432 222322 456666666666776666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVND 718 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~ 718 (808)
...+...+..+.+ .+|...-...+.++...|..+.+...+..+++ .+|...-...+.++...+. +++...+..
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 2223455555554 46777778888899999987666566666665 3465566667778877765 567777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 719 MKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGL 773 (808)
Q Consensus 719 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 773 (808)
+++ .|+...-...+.++.+.+.-..+...+..+++. +|..+-.....+|
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D---~d~~Vr~~A~~aL 894 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTD---SDADVRAYARRAL 894 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 664 567777777777777754455778888887763 3555444444433
No 430
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=48.59 E-value=2.9e+02 Score=27.62 Aligned_cols=17 Identities=24% Similarity=0.729 Sum_probs=7.2
Q ss_pred HHHHhcCCHHHHHHHHH
Q 046719 422 DKFCELGEMDKAEEWVK 438 (808)
Q Consensus 422 ~~~~~~g~~~~A~~~~~ 438 (808)
.-||+-|+-+.|.+.++
T Consensus 112 eYycqigDkena~~~~~ 128 (393)
T KOG0687|consen 112 EYYCQIGDKENALEALR 128 (393)
T ss_pred HHHHHhccHHHHHHHHH
Confidence 33444444444444433
No 431
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=48.34 E-value=2.6e+02 Score=26.89 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=30.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHH
Q 046719 559 ALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYS-SLGSSQKCLELYENMK 616 (808)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 616 (808)
.++....+.|++++....+.++...+...+..-.+.+..+|- ..|....+++++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 345556667777777777777776655555554555555542 2333444555555444
No 432
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.18 E-value=1.1e+02 Score=26.66 Aligned_cols=60 Identities=18% Similarity=0.112 Sum_probs=33.1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 717 NDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG 777 (808)
Q Consensus 717 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 777 (808)
+.+.+.|+.+++.= ..++..+.+.++.-.|.++|+++.+.++.-+..+.+..+..+.+.|
T Consensus 10 ~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444555443321 2345555556566666777777666666655555555555555555
No 433
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=47.68 E-value=3.6e+02 Score=28.32 Aligned_cols=62 Identities=19% Similarity=0.170 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVKGLIP-K-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
...|+.-|...|++.+|...++++ |++- + ...+..++.+..+.|+-..-+.++++..+.|.-
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI 575 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI 575 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce
Confidence 346777788888888888777664 2221 2 455667788888888877777777777666544
No 434
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.22 E-value=18 Score=30.41 Aligned_cols=31 Identities=23% Similarity=0.487 Sum_probs=19.4
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIF 701 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~ 701 (808)
...|.-.+|..+|++|++.|-+||. |+.|+.
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 3345666677777777777776665 445544
No 435
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.94 E-value=51 Score=30.46 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=25.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 679 VLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 679 ~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
+..++..+ ..|+..+|..++.++...|+.++|.+...++..
T Consensus 132 ~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 132 EWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444 356666666666666666666666666666655
No 436
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.80 E-value=2.2e+02 Score=29.81 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=35.1
Q ss_pred HHcC-HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH--HccCCHHHHHHHHHHHHHC
Q 046719 635 IREG-IVAVEKLFNEMLQINLVPDLL--VYNALIHCY--AEHGDVQKALVLHSEMVDQ 687 (808)
Q Consensus 635 ~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~g~~~~A~~~~~~~~~~ 687 (808)
...+ +..|.++++.+... ++++.. .+..+..+| ...-++++|.+.++.....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444 88889999888876 455443 344444444 4567888888888887764
No 437
>PRK12798 chemotaxis protein; Reviewed
Probab=46.47 E-value=3.7e+02 Score=28.14 Aligned_cols=228 Identities=15% Similarity=0.107 Sum_probs=121.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-
Q 046719 523 NMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLC--KKGRVMEAEDMLPQITSSGLNPDVITYNSLISGY- 599 (808)
Q Consensus 523 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~- 599 (808)
...+-....-|++.-... +...+..++.. +.++.+.. -.|+..++.+.+..+.....++....|..|+.+-
T Consensus 85 ~Aa~iy~lSGGnP~vlr~----L~~~d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l 158 (421)
T PRK12798 85 DAALIYLLSGGNPATLRK----LLARDKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNL 158 (421)
T ss_pred hHHHhhHhcCCCHHHHHH----HHHcCCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHH
Confidence 333334455677764443 34444333322 33444332 3788999999998887766777778888887754
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCcCHH----hHHHHHHHHHHcC-HHHHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHccC
Q 046719 600 SSLGSSQKCLELYENMKKLGIKPSLR----TYHPLLSGCIREG-IVAVEKLFNEMLQI-NLVPDL-LVYNALIHCYAEHG 672 (808)
Q Consensus 600 ~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~-~~~a~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~~g 672 (808)
....++.+|+++|+...-. -|... ....-+......| .+....+-...... .-.|-. ..+.-....+.+.+
T Consensus 159 ~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~ 236 (421)
T PRK12798 159 MVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLD 236 (421)
T ss_pred hcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcc
Confidence 4567888999999988753 34322 2333333345556 66655555544432 111211 12222333344333
Q ss_pred CHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-HHHHHH--HHHHHccCChhHH
Q 046719 673 DVQKALVLHSEMVDQGIRPDK--MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA-DTYNIL--VKGYCNLKDFGGA 747 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l--~~~~~~~g~~~~A 747 (808)
+-.. ...+..++.. ++|+. ..|..+...-...|+.+-|...-++.....-..+. ..-..+ ..+-.-..++++|
T Consensus 237 d~~~-~~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~a 314 (421)
T PRK12798 237 DEIR-DARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESA 314 (421)
T ss_pred cccc-HHHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHH
Confidence 2111 1224444443 44543 37777778888888888888777777654211111 111111 1112235567777
Q ss_pred HHHHHHHHHCCCC
Q 046719 748 YIWYREMFENGFI 760 (808)
Q Consensus 748 ~~~~~~~~~~~~~ 760 (808)
.+.+..+-.....
T Consensus 315 l~~L~~I~~~~L~ 327 (421)
T PRK12798 315 LEELSQIDRDKLS 327 (421)
T ss_pred HHHHhcCChhhCC
Confidence 7777666544333
No 438
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.98 E-value=53 Score=23.54 Aligned_cols=22 Identities=36% Similarity=0.733 Sum_probs=9.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHH
Q 046719 698 SLIFGHLREGKLSEVKELVNDM 719 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~ 719 (808)
.++.++...|++++|.++++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444444444444443
No 439
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=45.83 E-value=2e+02 Score=29.04 Aligned_cols=63 Identities=21% Similarity=0.164 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 710 SEVKELVNDMKVKGLIPK----ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLK 774 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 774 (808)
++....+..+++ ..|+ ...|..++......|.+++.+.+|++++..|-.|-.+....++..+-
T Consensus 120 eei~~~L~~li~--~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIK--NIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 455556666655 3454 24566777777778888888888888888887776666666666665
No 440
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=45.55 E-value=1.5e+02 Score=23.29 Aligned_cols=53 Identities=13% Similarity=0.019 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCC
Q 046719 691 PDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKD 743 (808)
Q Consensus 691 pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 743 (808)
.|......++..+...|++++|++.+-.+++..-.. +...-..++..+...|.
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 355577788888999999999998888887643222 23333445555544444
No 441
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.17 E-value=2.9e+02 Score=26.64 Aligned_cols=247 Identities=17% Similarity=0.179 Sum_probs=118.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHhcCCH
Q 046719 359 KVEIAEEIVGKEIENGLVPDE---VMFNTIVSGYCRTGDLNRAMLAIQQMENH---GL--APNCITFNTLIDKFCELGEM 430 (808)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~li~~~~~~g~~ 430 (808)
+.++|+.-|.+.++....... .....+|..+.+.|++++..+.+.++... .+ .-+..+.|++++..+...+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 444555555554443211111 22344566666777777777766666431 00 11334556666655555555
Q ss_pred HHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----------CHhhHHHHHHHH
Q 046719 431 DKAEEWVKRMLEK-----GVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKP-----------NVVSYGSLINWL 494 (808)
Q Consensus 431 ~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~-----------~~~~~~~ll~~~ 494 (808)
+.-..+++.-++. +-..-..|-.-|...|...+.+.+..++++++..+.... =...|..-|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 5555544433221 001112233445666777777777777777775431111 134566666777
Q ss_pred HhcCCHHHHHHHHHHHHhC-CCCcchhHHHHHH----HHHHhcCCHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHH
Q 046719 495 CKDCKLLEAEIVLKDMENR-GVLPNAQIYNMLI----DGSCTMGRIKDAFKFFDEMVK----REMGPT--LVTFNALING 563 (808)
Q Consensus 495 ~~~~~~~~A~~~~~~m~~~-~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~ 563 (808)
..+.+-..-..++++.... ...|.+.+...+- .+..+.|++++|..=|-+..+ .|.+.- .--|..|.++
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANM 281 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM 281 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHH
Confidence 7777666666677665432 1223333332221 233456777777544433332 232211 1124445555
Q ss_pred HHhcCC----hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 046719 564 LCKKGR----VMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYE 613 (808)
Q Consensus 564 ~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 613 (808)
+.+.|- -++| .-..-.|.+.+.+.|+.+|- .+++.+-.+++.
T Consensus 282 LmkS~iNPFDsQEA-------KPyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~ 327 (440)
T KOG1464|consen 282 LMKSGINPFDSQEA-------KPYKNDPEILAMTNLVAAYQ-NNDIIEFERILK 327 (440)
T ss_pred HHHcCCCCCccccc-------CCCCCCHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 555441 1111 11112345566677777764 344444444443
No 442
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=44.78 E-value=1.4e+02 Score=25.04 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 046719 223 AEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRD 268 (808)
Q Consensus 223 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 268 (808)
..+-+..+..-.+.|++.....-++++.|.+|+..|.++|+-++..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555555566777777777777777777777777777776543
No 443
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.36 E-value=3.6e+02 Score=28.19 Aligned_cols=54 Identities=9% Similarity=0.044 Sum_probs=39.7
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCcCHH--hHHHHHHHHHHcC---HHHHHHHHHHHHHC
Q 046719 598 GYSSLGSSQKCLELYENMKKLGIKPSLR--TYHPLLSGCIREG---IVAVEKLFNEMLQI 652 (808)
Q Consensus 598 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~---~~~a~~~~~~~~~~ 652 (808)
.+...+++..|.++++.+... ++++.. .+..+..+|..-. .++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445799999999999999986 566554 4455555554333 88999999987764
No 444
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.00 E-value=1.7e+02 Score=23.70 Aligned_cols=75 Identities=11% Similarity=0.049 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 046719 673 DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYR 752 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 752 (808)
..+||..+.+-+...+- -...+--.-+..+...|+|++| +..-... ..||...|..|. -.+.|--+++..++.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~-~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQCH-CYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTTS---GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcccC-CCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 45566666555555331 1111212233345555666665 1111111 344555554442 235555555555555
Q ss_pred HH
Q 046719 753 EM 754 (808)
Q Consensus 753 ~~ 754 (808)
++
T Consensus 94 rl 95 (116)
T PF09477_consen 94 RL 95 (116)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 445
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=43.71 E-value=3.6e+02 Score=27.20 Aligned_cols=116 Identities=11% Similarity=0.090 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHH----cC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 046719 603 GSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIR----EG---IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQ 675 (808)
Q Consensus 603 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 675 (808)
+-++++..++++...++. |.+......|.++-. .. +.....+|+-+......| +++.|--+ +..+.--.+
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-vV~LNRAV-Ala~~~Gp~ 346 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-VVTLNRAV-ALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-eEeehHHH-HHHHhhhHH
Confidence 346667777777666553 666666666555421 11 566666666666643222 23333322 333444456
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 676 KALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 676 ~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
.++.+.+-+.+.+--.+.. .+..-+..+.+.|+.++|...|++.+.
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 6666666665542111222 233445566677777777777777766
No 446
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=43.37 E-value=1.2e+02 Score=29.33 Aligned_cols=58 Identities=14% Similarity=0.052 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 046719 697 NSLIFGHLREGKLSEVKELVNDMK----VKGL-IPKADTYNILVKGYCNLKDFGGAYIWYREM 754 (808)
Q Consensus 697 ~~l~~~~~~~g~~~~A~~~~~~~~----~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 754 (808)
..++.-|...|++++|.++++.+. +.|. .+...+...+..++.+.|+.++.+.+.=++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 356677777777777777777763 1222 123444556677777777777776665444
No 447
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=43.23 E-value=3.2e+02 Score=26.51 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 046719 673 DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLS-EVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWY 751 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 751 (808)
++.+-++.++++.+. .+-|...|..--......|+.. .=+++.+.|++. -..|-..|..--+++..-++++.-+.+.
T Consensus 93 dL~~El~~l~eI~e~-npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~-DaKNYHaWshRqW~~r~F~~~~~EL~y~ 170 (318)
T KOG0530|consen 93 DLNKELEYLDEIIED-NPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDD-DAKNYHAWSHRQWVLRFFKDYEDELAYA 170 (318)
T ss_pred HHHHHHHHHHHHHHh-CccchhHHHHHHHHHHHhcCcccchHHHHHHHHhc-cccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence 344455555555553 2224444443333333344443 444555555542 1234455555555555555566666666
Q ss_pred HHHHHCCCC
Q 046719 752 REMFENGFI 760 (808)
Q Consensus 752 ~~~~~~~~~ 760 (808)
.++++.++.
T Consensus 171 ~~Lle~Di~ 179 (318)
T KOG0530|consen 171 DELLEEDIR 179 (318)
T ss_pred HHHHHHhhh
Confidence 666655544
No 448
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.13 E-value=3.3e+02 Score=26.64 Aligned_cols=95 Identities=18% Similarity=0.150 Sum_probs=43.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHH----HHCCCCCCHHHHHH-HHHHHHhcCCHhHHHHHHHHHHHC----CCCCCHHHHH
Q 046719 662 NALIHCYAEHGDVQKALVLHSEM----VDQGIRPDKMTYNS-LIFGHLREGKLSEVKELVNDMKVK----GLIPKADTYN 732 (808)
Q Consensus 662 ~~l~~~~~~~g~~~~A~~~~~~~----~~~g~~pd~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~~~~ 732 (808)
..++..+.+.|.+.+|+.+...+ .+..-+|+.++... =-.+|..-.+..++..-+..+... -++|-...-.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 44667777778877777655433 33233344332211 123333333344333333332211 1233222222
Q ss_pred HHHHH--HHccCChhHHHHHHHHHHH
Q 046719 733 ILVKG--YCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 733 ~l~~~--~~~~g~~~~A~~~~~~~~~ 756 (808)
-|.++ .|...++.-|..+|-++.+
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHh
Confidence 22222 2445567777777777665
No 449
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=42.90 E-value=1.8e+02 Score=23.61 Aligned_cols=78 Identities=17% Similarity=0.109 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 046719 184 DLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRE 263 (808)
Q Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 263 (808)
..++|..+.+.+...+.. ...+--+-+..+...|+|++|+ .. ......||...|-+|.. .|.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~AL---l~-~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEAL---LL-PQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHH---HH-HTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHH---Hh-cccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 566777777776665431 2233334445556677777771 11 12223566666655433 46677777766666
Q ss_pred HHHhC
Q 046719 264 RMKRD 268 (808)
Q Consensus 264 ~~~~~ 268 (808)
++...
T Consensus 94 rla~~ 98 (116)
T PF09477_consen 94 RLASS 98 (116)
T ss_dssp HHCT-
T ss_pred HHHhC
Confidence 66444
No 450
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=42.43 E-value=1.4e+02 Score=25.11 Aligned_cols=40 Identities=20% Similarity=0.086 Sum_probs=16.7
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChhHHHHHH
Q 046719 712 VKELVNDMKVKGLIPKA-DTYNILVKGYCNLKDFGGAYIWY 751 (808)
Q Consensus 712 A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 751 (808)
..++|..|..+|+-... ..|...+..+...|++.+|.++|
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34444444444443322 22333444444444444444444
No 451
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=42.10 E-value=3.9e+02 Score=27.18 Aligned_cols=58 Identities=9% Similarity=-0.059 Sum_probs=24.4
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHH
Q 046719 469 FQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDG 528 (808)
Q Consensus 469 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 528 (808)
+.++++..+. .+.+...+..++..+.+..+.++..+.++++...... +...|...++.
T Consensus 51 lsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~ 108 (321)
T PF08424_consen 51 LSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHH
Confidence 3344443333 1233444444444444444444444445554443211 33444444443
No 452
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=42.02 E-value=1.3e+02 Score=30.11 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=38.3
Q ss_pred HHHcC-HHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC
Q 046719 634 CIREG-IVAVEKLFNEMLQINL-VPD--LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGK 708 (808)
Q Consensus 634 ~~~~~-~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~ 708 (808)
|.+.. +..|...|.+-++... .|| .+.|+.-..+-...|++..|+.=...... +.|+.. .|..=+.++....+
T Consensus 91 ~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 91 YFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGAKCLLELER 168 (390)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhhHHHHHHHH
Confidence 44444 5555555555444221 222 34444444444444555555555555544 344433 33334444444444
Q ss_pred HhHHHHHHHHH
Q 046719 709 LSEVKELVNDM 719 (808)
Q Consensus 709 ~~~A~~~~~~~ 719 (808)
+.+|..+.+..
T Consensus 169 ~~~a~nw~ee~ 179 (390)
T KOG0551|consen 169 FAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHhhh
Confidence 55554444443
No 453
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=41.74 E-value=50 Score=32.19 Aligned_cols=61 Identities=13% Similarity=0.008 Sum_probs=43.7
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHH
Q 046719 702 GHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCI 765 (808)
Q Consensus 702 ~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 765 (808)
-..+.|+.++|..+|+.++. +.| ++.....++......++.-+|-.+|-+++...|. +.+.
T Consensus 125 ~~~~~Gk~ekA~~lfeHAla--laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~-nseA 186 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALA--LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG-NSEA 186 (472)
T ss_pred HHHhccchHHHHHHHHHHHh--cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC-chHH
Confidence 35677888888888888887 556 4666666666666677788888888888766555 4443
No 454
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=40.70 E-value=6.2e+02 Score=29.11 Aligned_cols=50 Identities=10% Similarity=0.025 Sum_probs=26.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 671 HGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 671 ~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
+++.+.|+.+++.+...|. -+.. .|...+..-...|+...+..+++++..
T Consensus 475 ~~nmd~~R~iWn~imty~~-~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~ 525 (881)
T KOG0128|consen 475 LKNMDKAREIWNFIMTYGG-GSIAGKWLEAINLEREYGDGPSARKVLRKAYS 525 (881)
T ss_pred hhchhhhhHhhhccccCCc-chHHHHHHHHHhHHHHhCCchhHHHHHHHHHh
Confidence 4566666666666655431 1233 444455555555666666665555544
No 455
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.14 E-value=2.6e+02 Score=25.44 Aligned_cols=14 Identities=14% Similarity=0.351 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHC
Q 046719 674 VQKALVLHSEMVDQ 687 (808)
Q Consensus 674 ~~~A~~~~~~~~~~ 687 (808)
++.|+.+|+.+.+.
T Consensus 85 LESAl~v~~~I~~E 98 (200)
T cd00280 85 LESALMVLESIEKE 98 (200)
T ss_pred HHHHHHHHHHHHHh
Confidence 55666666666553
No 456
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.76 E-value=3.2e+02 Score=28.29 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD---KMTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
..+.-+.+.|..+|+++.|++.|.+..+. .... +..|..++..-.-.|+|.....+..++..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 35566667777777777777777775543 1111 12344455555555666666666555543
No 457
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=39.44 E-value=4.8e+02 Score=27.45 Aligned_cols=57 Identities=19% Similarity=0.337 Sum_probs=37.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 046719 664 LIHCYAEHGDVQKALVLHSEMVDQGIRP--DKMTYNSLIFGHLREGKLSEVKELVNDMKVKG 723 (808)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~~~~~g~~p--d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 723 (808)
|+.-|.-.|++.||...++++ |.+- ..+.+.+++.+.-+.|+-+..+.+++.+-+.|
T Consensus 515 LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 515 LLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 445566677888887776655 3332 33466777777777777766677777665554
No 458
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=38.27 E-value=2.2e+02 Score=28.83 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDL----LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHL 704 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~ 704 (808)
.++...++.++++. .|+. -.|.+++......|.+++.+.+|++++..|..|=...-..++..+.
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 56666777777663 4543 4677888888888998999999999998888886666556666655
No 459
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=38.12 E-value=1.9e+02 Score=22.47 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=19.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 046719 531 TMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEA 573 (808)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 573 (808)
..|+.+.|.++++.+. +| +..|..+++++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 4455666666666655 32 22345555555555544433
No 460
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=37.98 E-value=1.2e+02 Score=20.26 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHhhHH
Q 046719 148 NQYDRALDLFDEIVCMGFRPDKFTYG 173 (808)
Q Consensus 148 ~~~~~A~~~~~~~~~~~~~~~~~~~~ 173 (808)
|-..++..++++|.+.|+..+...+.
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHH
Confidence 33334444444444444443333333
No 461
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=37.55 E-value=1.3e+02 Score=20.23 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=7.3
Q ss_pred CCHhHHHHHHHHHHhCCCC
Q 046719 218 KKIRDAEKLFDEMCQRKLV 236 (808)
Q Consensus 218 g~~~~A~~~~~~m~~~~~~ 236 (808)
|-++++..++++|.+.|+.
T Consensus 16 GlI~~~~~~l~~l~~~g~~ 34 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFR 34 (48)
T ss_pred CChhhHHHHHHHHHHcCcc
Confidence 3333333333333333333
No 462
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.11 E-value=3.6e+02 Score=31.06 Aligned_cols=155 Identities=15% Similarity=0.153 Sum_probs=83.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 046719 595 LISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGD 673 (808)
Q Consensus 595 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 673 (808)
+|..+.+.|.++-|+.+.+.-... ...+...| ++.|.+.-.+ -.|..+|..|+..-.+.|+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tR------------F~LaLe~gnle~ale~akk------ldd~d~w~rLge~Al~qgn 687 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTR------------FELALECGNLEVALEAAKK------LDDKDVWERLGEEALRQGN 687 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchh------------eeeehhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHhcc
Confidence 444455666666666654432211 11223445 5555554443 2345577777777777788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 046719 674 VQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYRE 753 (808)
Q Consensus 674 ~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 753 (808)
.+-|...|++... |+.|-..|.-.|+.++-.++.+.+.. ..|..+. .....-.|+.++=.++++.
T Consensus 688 ~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~---r~D~~~~---~qnalYl~dv~ervkIl~n 752 (1202)
T KOG0292|consen 688 HQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEI---RNDATGQ---FQNALYLGDVKERVKILEN 752 (1202)
T ss_pred hHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHh---hhhhHHH---HHHHHHhccHHHHHHHHHh
Confidence 7777777777654 34455556667777766655554432 2232221 1111225777777766665
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 754 MFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 754 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
. |.- +...... ...|.-++|.++.++.-+
T Consensus 753 ~---g~~-~laylta-----~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 753 G---GQL-PLAYLTA-----AAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred c---Ccc-cHHHHHH-----hhcCcHHHHHHHHHhhcc
Confidence 4 322 3222222 245666777777777766
No 463
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=35.79 E-value=3.2e+02 Score=27.54 Aligned_cols=72 Identities=22% Similarity=0.410 Sum_probs=42.2
Q ss_pred HHHccCCHHHHHHHHHHHHHC---CCCCCHHHH--HHHHHHHHhcCCHhHHHHHHHHHHH-----CCCCCCHH-HHHHHH
Q 046719 667 CYAEHGDVQKALVLHSEMVDQ---GIRPDKMTY--NSLIFGHLREGKLSEVKELVNDMKV-----KGLIPKAD-TYNILV 735 (808)
Q Consensus 667 ~~~~~g~~~~A~~~~~~~~~~---g~~pd~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~-~~~~l~ 735 (808)
..-+.++.++|+++++++.+. --.||.+.| ...+.++...|+..++.+.+.+..+ .|++|+.. .|+.+.
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ls 163 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLS 163 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHH
Confidence 444556778888877777653 123455533 3455666677777777777777655 45555433 244444
Q ss_pred HHH
Q 046719 736 KGY 738 (808)
Q Consensus 736 ~~~ 738 (808)
.-|
T Consensus 164 sqY 166 (380)
T KOG2908|consen 164 SQY 166 (380)
T ss_pred HHH
Confidence 444
No 464
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=35.58 E-value=1.2e+03 Score=30.91 Aligned_cols=149 Identities=13% Similarity=0.135 Sum_probs=81.9
Q ss_pred HHHHHHccCChhHHHHHHHH----HHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHH
Q 046719 280 LLGGFCKAKRMEEAKSVCKE----MEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALC 355 (808)
Q Consensus 280 li~~~~~~g~~~~A~~~~~~----m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 355 (808)
+..+-.+++.+..|...++. ..+. .-....+..+...|...+++|.+..+...-.. +. .....+-...
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~-sl~~qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DP-SLYQQILEHE 1460 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Cc-cHHHHHHHHH
Confidence 33344466777777777766 2221 11223344444577788888777766653111 11 1222444556
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHH
Q 046719 356 KEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTL-IDKFCELGEMDKAE 434 (808)
Q Consensus 356 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~ 434 (808)
..|++..|...|+.+.+.+.+ ....++.++......|.++..+...+-.... ..+....++++ +.+-.+.+++|..+
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 678888888888888776433 3556666666666677777666655544433 12223333332 23335666666666
Q ss_pred HHHH
Q 046719 435 EWVK 438 (808)
Q Consensus 435 ~~~~ 438 (808)
..+.
T Consensus 1539 ~~l~ 1542 (2382)
T KOG0890|consen 1539 SYLS 1542 (2382)
T ss_pred hhhh
Confidence 5554
No 465
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=35.36 E-value=4.6e+02 Score=26.04 Aligned_cols=21 Identities=10% Similarity=0.460 Sum_probs=16.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHH
Q 046719 379 EVMFNTIVSGYCRTGDLNRAM 399 (808)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~ 399 (808)
..+|..|+.++|..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 446888899999999877554
No 466
>PRK13342 recombination factor protein RarA; Reviewed
Probab=35.07 E-value=5.8e+02 Score=27.11 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HhHHHHHHHHHHHCCC
Q 046719 671 HGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGK-----LSEVKELVNDMKVKGL 724 (808)
Q Consensus 671 ~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~g~ 724 (808)
.++.+.|+..+.+|++.|..|....-..+..++-..|. ..-|...++....-|.
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~ 301 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGM 301 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCC
Confidence 46778888888888887777765554444444444442 2333344444444453
No 467
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=34.61 E-value=92 Score=30.71 Aligned_cols=30 Identities=17% Similarity=0.371 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVKGLI 725 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 725 (808)
|+..|....+.|++++|+.+++++.+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 334444444455555555555555444443
No 468
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=34.60 E-value=4e+02 Score=25.19 Aligned_cols=100 Identities=19% Similarity=0.222 Sum_probs=58.9
Q ss_pred CCcCHHhHHHH-HHHHHHcCHHHHHHHHHHHHHCCC-CCCHHHHH--HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 046719 620 IKPSLRTYHPL-LSGCIREGIVAVEKLFNEMLQINL-VPDLLVYN--ALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMT 695 (808)
Q Consensus 620 ~~p~~~~~~~l-~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~ 695 (808)
+.+...-++.| ++.+...|+.+|.+.|.+-..... ..|...++ .-|....+.|++++|++....+.-.-+..|...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 44555555555 455566677777777765443211 22444443 345667889999999999887743323334332
Q ss_pred HHHHHH----HHHhcCCHhHHHHHHHHH
Q 046719 696 YNSLIF----GHLREGKLSEVKELVNDM 719 (808)
Q Consensus 696 ~~~l~~----~~~~~g~~~~A~~~~~~~ 719 (808)
+-.|.. =+.+.|..++|+++++.-
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 322221 234677888888887763
No 469
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=34.50 E-value=71 Score=31.45 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 046719 243 NTLVDGYCKVGEFEKVSALRERMKRDKVE 271 (808)
Q Consensus 243 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 271 (808)
+..|....+.||+++|+.++++..+.|..
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 45555556666666666666666555544
No 470
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=34.39 E-value=1.9e+02 Score=28.21 Aligned_cols=62 Identities=16% Similarity=-0.039 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 697 NSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 697 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
..+=..+.+.++++.|....++.+. +.| |+.-+.--+-+|.+.|...-|++-++...++-|+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~--l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLD--LNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHh--hCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 3445567777777777777777776 434 4555556666777777777777777777766554
No 471
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=34.24 E-value=3.2e+02 Score=23.84 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCcchhHHHHH
Q 046719 452 NNTLIDGYGRMGHFDKCFQILEEMENSG-----MKPNVVSYGSLINWLCKDCK-LLEAEIVLKDMENRGVLPNAQIYNML 525 (808)
Q Consensus 452 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~~l 525 (808)
.++++.-....+++...+.+++.+.... -..+..+|..++.+..+... ---+..+|.-|.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555556665555555552210 01233455556655544444 33345556666655556666666666
Q ss_pred HHHHHh
Q 046719 526 IDGSCT 531 (808)
Q Consensus 526 i~~~~~ 531 (808)
|.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 665544
No 472
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=33.94 E-value=80 Score=22.92 Aligned_cols=50 Identities=12% Similarity=0.136 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046719 726 PKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQE 776 (808)
Q Consensus 726 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 776 (808)
|....+..+....++..-.++++.++.+++..|.- +...|..-++.+.+.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 44455566666666666677777777777776654 666666666666553
No 473
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.78 E-value=4.8e+02 Score=25.99 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=21.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 046719 679 VLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMK 720 (808)
Q Consensus 679 ~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 720 (808)
++|+.+.+.++.|.-.++.-+--.+.+.=.+.+.+.+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344445555555555544444444444444555555555543
No 474
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=33.72 E-value=2e+02 Score=30.17 Aligned_cols=125 Identities=13% Similarity=0.030 Sum_probs=74.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQ------GIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYN 732 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 732 (808)
+...|++.++-.|++..|+++++.+.=. .+++ .+.++..++-+|.-.+++.+|++.|..++-. +....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y-i~r~k---- 198 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY-IQRTK---- 198 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh----
Confidence 4456778888999999999998876311 1233 2347889999999999999999999998641 10000
Q ss_pred HHHHHHHccCChhHHHHHHHHHH-------HCCCC-CCHHHHHHHHHHH------HhcCChhHHHHHHHHHHH
Q 046719 733 ILVKGYCNLKDFGGAYIWYREMF-------ENGFI-PSFCIYNELTNGL------KQEGKLKEAQILCSEISI 791 (808)
Q Consensus 733 ~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~-~~~~~~~~l~~~l------~~~g~~~~A~~~~~~~~~ 791 (808)
-....+..+++...+..++|. ...|. .|..+...+-+-+ .+.|+.+.-.++|...-.
T Consensus 199 --~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~acP 269 (404)
T PF10255_consen 199 --NQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFACP 269 (404)
T ss_pred --hhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhhCC
Confidence 012234445555555555554 33332 2333333332222 345666666666665543
No 475
>PRK09462 fur ferric uptake regulator; Provisional
Probab=33.48 E-value=2.6e+02 Score=24.38 Aligned_cols=60 Identities=7% Similarity=-0.020 Sum_probs=28.1
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 046719 684 MVDQGIRPDKMTYNSLIFGHLRE-GKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDF 744 (808)
Q Consensus 684 ~~~~g~~pd~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 744 (808)
+.+.|++....- ..++..+... +..-.|.++++.+.+.+...+..|.+--+..+...|-.
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 334455443321 1333333332 34455666666665554444555544445555555543
No 476
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=33.45 E-value=3e+02 Score=25.01 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=13.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 046719 421 IDKFCELGEMDKAEEWVKRMLE 442 (808)
Q Consensus 421 i~~~~~~g~~~~A~~~~~~~~~ 442 (808)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3345666666666666666554
No 477
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.01 E-value=4.9e+02 Score=25.63 Aligned_cols=66 Identities=15% Similarity=0.402 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHCC
Q 046719 414 CITFNTLIDKFCELGEMDKAEEWVKRMLEK----GVSPNVKTNNT-LIDGYGRMGHFDKCFQILEEMENSG 479 (808)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~~~ 479 (808)
...+..+..-|++-++.+.+.++..+..+. |.+.|+..... |.-.|....-.++.++..+.|.+.|
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 345556666677777766666666554432 44444432222 2223333334455555555555554
No 478
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=32.99 E-value=2.4e+02 Score=24.58 Aligned_cols=57 Identities=23% Similarity=0.216 Sum_probs=28.0
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcC
Q 046719 126 KADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIG 183 (808)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 183 (808)
.+.|.+.+.. ...+++.+...+..-.|..+|+.+.+.++..+..|--..+..+...|
T Consensus 13 k~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 13 KEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344433332 34455555555555556666666665555544444444444444444
No 479
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=32.93 E-value=79 Score=23.74 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=20.4
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 709 LSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 709 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
+++|+.+++++.+.+ ..|++++|+.+|..+++
T Consensus 3 l~kai~Lv~~A~~eD----------------~~gny~eA~~lY~~ale 34 (75)
T cd02680 3 LERAHFLVTQAFDED----------------EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHHHHHHHHHHHhh----------------HhhhHHHHHHHHHHHHH
Confidence 456666666654422 36777777777777765
No 480
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=32.23 E-value=1.1e+02 Score=18.57 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH
Q 046719 674 VQKALVLHSEMVDQGIRPDKMTY 696 (808)
Q Consensus 674 ~~~A~~~~~~~~~~g~~pd~~~~ 696 (808)
++.|..+|++.+. +.|+..+|
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHH
Confidence 4555555555555 34554444
No 481
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=31.63 E-value=2.5e+02 Score=29.90 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=30.4
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHH------------HHHhcCCHhHHHHHHHHHHHCC
Q 046719 670 EHGDVQKALVLHSEMVDQGIRPDKMT--YNSLIF------------GHLREGKLSEVKELVNDMKVKG 723 (808)
Q Consensus 670 ~~g~~~~A~~~~~~~~~~g~~pd~~~--~~~l~~------------~~~~~g~~~~A~~~~~~~~~~g 723 (808)
-.|+.++-.+.=+.+.+. +++|... |..++. ++...|.-.++-..|++|++.|
T Consensus 357 LSGdpeDi~~TD~~~~e~-~~~~~~~~~WI~~A~e~~~fqGlpARI~wlg~~eR~~~~l~fNe~V~~G 423 (545)
T TIGR01228 357 LSGDPADIYRTDAAVKEL-FPEDAHLHRWIDMAQERVSFQGLPARICWLGYGERAKLGLAINEMVRSG 423 (545)
T ss_pred cCCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHhcCcccCCchhhhhcCccHHHHHHHHHHHHHHcC
Confidence 357777777666666554 5555542 222221 1334555566667788887766
No 482
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.46 E-value=7.8e+02 Score=28.63 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=41.0
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHH
Q 046719 707 GKLSEVKELVNDMKVKGLIPKAD--TYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCI 765 (808)
Q Consensus 707 g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 765 (808)
+..+.+.++..-.....+.|-.. +....+..+.+.+++..|..+-.+.++.++.|+...
T Consensus 1061 ~~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~ 1121 (1202)
T KOG0292|consen 1061 PNLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAE 1121 (1202)
T ss_pred chHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHH
Confidence 34555555555455555667543 345667888899999999999999999888876554
No 483
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=30.86 E-value=1.1e+02 Score=23.35 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=23.7
Q ss_pred ccCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 740 NLKDFGGAYIWYREMFE---NGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 740 ~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
..|+.++|+.+|++.+. .|+..+.. .....-.|++|..+-++|..
T Consensus 20 E~g~~e~Al~~Y~~gi~~l~eg~ai~~~-------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 20 EWGDKEQALAHYRKGLRELEEGIAVPVP-------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHcCCCCC-------cccccHHHHHHHHHHHHHHH
Confidence 34667777777766553 23321111 12233456777777776654
No 484
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=30.42 E-value=3.4e+02 Score=22.98 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHH
Q 046719 745 GGAYIWYREMFENGFIPS-FCIYNELTNGLKQEGKLKEAQILCSE 788 (808)
Q Consensus 745 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~g~~~~A~~~~~~ 788 (808)
++..++|.-|...++-.. +..|...+..+-..|++++|..+++.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 557888999998877544 55666888899999999999998864
No 485
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=30.00 E-value=1.7e+02 Score=21.32 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=33.3
Q ss_pred CChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 046719 202 PNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCK 251 (808)
Q Consensus 202 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 251 (808)
|....++.++..+++..-+++++..+++....|.- +..+|.--++.++|
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 45567777887777777778888888888777653 56666666665554
No 486
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=29.89 E-value=9.2e+02 Score=27.86 Aligned_cols=82 Identities=12% Similarity=0.024 Sum_probs=54.8
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhH
Q 046719 704 LREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPS--FCIYNELTNGLKQEGKLKE 781 (808)
Q Consensus 704 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~g~~~~ 781 (808)
...++.+.+..+++.+...|...-...|...+..-...|+...|..+++.+...-..|+ ..++-.+.+.....|.++.
T Consensus 473 sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~ 552 (881)
T KOG0128|consen 473 SLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLES 552 (881)
T ss_pred HHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHH
Confidence 34678999999999988765322223677777777778999999999999887655654 2333344444455566665
Q ss_pred HHHH
Q 046719 782 AQIL 785 (808)
Q Consensus 782 A~~~ 785 (808)
+...
T Consensus 553 ~~~~ 556 (881)
T KOG0128|consen 553 FDLC 556 (881)
T ss_pred Hhhh
Confidence 5433
No 487
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=29.74 E-value=64 Score=27.31 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=9.9
Q ss_pred CChhHHHHHHHHHHhCCCCCC
Q 046719 113 KLPSEALQLYASTKADGTRLS 133 (808)
Q Consensus 113 ~~~~~a~~~~~~~~~~~~~~~ 133 (808)
|.-.+|-.+|..|+..|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 344444455555555444443
No 488
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=29.46 E-value=6.7e+02 Score=26.15 Aligned_cols=152 Identities=11% Similarity=0.041 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--------HHHHhcCCHhHHHHHHHHH-----HHCC
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLI--------FGHLREGKLSEVKELVNDM-----KVKG 723 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~--------~~~~~~g~~~~A~~~~~~~-----~~~g 723 (808)
+...+-.++-.+..+.++++|.++-+.....-..-|..+++.+. ..+-..|+...-..++... ++.+
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd 204 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHD 204 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCc
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCchh
Q 046719 724 LIPKADTYNILVKGYCNLKDFGGAYIWYREMF---ENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWTNE 800 (808)
Q Consensus 724 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ 800 (808)
...-....+.|+..|...+.++.|.++..+.. ...-.......+.++..-.-++++..|.+.+-.+.-+.|+.-.-.
T Consensus 205 ~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alG 284 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALG 284 (493)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhh
Q ss_pred hhHhhhcC
Q 046719 801 DQSAVAKM 808 (808)
Q Consensus 801 ~~~~~~~~ 808 (808)
-..++.|+
T Consensus 285 f~q~v~k~ 292 (493)
T KOG2581|consen 285 FRQQVNKL 292 (493)
T ss_pred HHHHHHHH
No 489
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=29.21 E-value=2e+02 Score=30.73 Aligned_cols=31 Identities=13% Similarity=-0.048 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 046719 764 CIYNELTNGLKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 764 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
+.+..|++++...++..+|+.....+....|
T Consensus 446 kah~~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 446 KAHFRLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 4444555555555555555555544444444
No 490
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=29.12 E-value=1e+03 Score=28.10 Aligned_cols=71 Identities=18% Similarity=0.058 Sum_probs=39.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChhHH
Q 046719 712 VKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFE-NGFIPSFCIYNELTNGLKQEGKLKEA 782 (808)
Q Consensus 712 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~g~~~~A 782 (808)
-.+.|.++.+.=-..|..+|..-..-+...|++..|++++.++++ .+-.++...+..++..+...|-.+-|
T Consensus 1215 ~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H~~ 1286 (1304)
T KOG1114|consen 1215 YNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNHLA 1286 (1304)
T ss_pred HHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchHhH
Confidence 334444444321123445555445555567777777777777776 44455556666666666655544333
No 491
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=28.82 E-value=4.6e+02 Score=24.07 Aligned_cols=56 Identities=14% Similarity=0.251 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--------------CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 046719 419 TLIDKFCELGEMDKAEEWVKRMLEKGV--------------SPNVKTNNTLIDGYGRMGHFDKCFQILEE 474 (808)
Q Consensus 419 ~li~~~~~~g~~~~A~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 474 (808)
+++..|.+..++.+++++++.|.+..+ .+.-..-|.-...+.+.|.+|.|+.++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 344556666666777776666654321 12233445556667777777777777663
No 492
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=28.15 E-value=5.9e+02 Score=25.41 Aligned_cols=42 Identities=10% Similarity=0.144 Sum_probs=22.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046719 225 KLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMK 266 (808)
Q Consensus 225 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 266 (808)
++++.+.+.++.|...++--+.-.+.+.=.+.++..+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 445555555555555555555555555555555555555554
No 493
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.02 E-value=8.4e+02 Score=26.82 Aligned_cols=213 Identities=14% Similarity=0.076 Sum_probs=0.0
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHH------------HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 046719 217 EKKIRDAEKLFDEMCQRKLVPTRV------------TYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGF 284 (808)
Q Consensus 217 ~g~~~~A~~~~~~m~~~~~~p~~~------------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 284 (808)
+..+++|...|.-.... ..|+.+ +.-.+...+..+|+.+-+..+.++
T Consensus 251 s~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR-------------------- 309 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIER-------------------- 309 (665)
T ss_pred chHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHH--------------------
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHh----------------hHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHH
Q 046719 285 CKAKRMEEAKSVCKEMEAHGFDPDGF----------------TYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCS 348 (808)
Q Consensus 285 ~~~g~~~~A~~~~~~m~~~g~~~~~~----------------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 348 (808)
++-.|+......+.|... +.-.-+..+.+.|.+..|.+..+.+.+-....|+....
T Consensus 310 --------~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l 381 (665)
T KOG2422|consen 310 --------GLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGIL 381 (665)
T ss_pred --------HHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHH
Q ss_pred HHHHHH-HhcCChHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 349 ILLNAL-CKEGKVEIAEEIVGKEIENG---LVPDEVMFNTIVSGYCRTGD---LNRAMLAIQQMENHGLAPNCITFNTLI 421 (808)
Q Consensus 349 ~l~~~~-~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~li 421 (808)
.+|+.| .+..+++.-+++++.....+ ..||-.--.+++..|..... .+.|...+.+.... -+...+-|+
T Consensus 382 ~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~----~P~vl~eLl 457 (665)
T KOG2422|consen 382 YLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH----HPLVLSELL 457 (665)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh----CcHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 046719 422 DKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGH 464 (808)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 464 (808)
..+.- ..+.+...++.....-..+...++..++..|.....
T Consensus 458 d~~~l--~~da~~~~~k~~~~~a~~~e~pal~~lv~lY~~r~~ 498 (665)
T KOG2422|consen 458 DELLL--GDDALTKDLKFDGSSAENSELPALMLLVKLYANRNE 498 (665)
T ss_pred HhccC--CchhhhhhhcccccccccccchHHHHHHHHHHhhhh
No 494
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=27.66 E-value=1.1e+02 Score=19.31 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=12.9
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHH
Q 046719 730 TYNILVKGYCNLKDFGGAYIWYREMF 755 (808)
Q Consensus 730 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 755 (808)
+|..|+..-...++|+.|..=|++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444555555555555555554444
No 495
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=27.48 E-value=6.3e+02 Score=25.17 Aligned_cols=162 Identities=13% Similarity=0.174 Sum_probs=80.4
Q ss_pred HHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHH
Q 046719 564 LCKKG-RVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAV 642 (808)
Q Consensus 564 ~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a 642 (808)
+.+.| -..-|.++|...... ...+.++..+.+.+.-+.-.++ ++|+..+...+...+...|+.+.
T Consensus 176 LVkeGi~l~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmef--------fPpnkrs~E~Fak~Ft~agL~el 241 (412)
T KOG2297|consen 176 LVKEGIALSFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEF--------FPPNKRSVEHFAKYFTDAGLKEL 241 (412)
T ss_pred HHHHhHHHHHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHh--------cCCcchhHHHHHHHHhHhhHHHH
Confidence 34444 234456666665532 1234556555544433333222 57777777777777777775444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHh-HHHHHHH
Q 046719 643 EKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM----TYNSLIFGHLREGKLS-EVKELVN 717 (808)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~----~~~~l~~~~~~~g~~~-~A~~~~~ 717 (808)
.++.+.-...+ .-...-..|..-..+...+++.....++-.+..--|+.. .|..++.+---..+-+ -|.+.++
T Consensus 242 vey~~~q~~~~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalr 319 (412)
T KOG2297|consen 242 VEYHRNQQSEG--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALR 319 (412)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH
Confidence 44443322111 111222334444455566777776665544433345543 4555554433221111 1222222
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChhHHHHH
Q 046719 718 DMKVKGLIPKADTYNILVKGYCNLKDFGGAYIW 750 (808)
Q Consensus 718 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 750 (808)
. ..+|.-|+.++|.+|+.+-++-+
T Consensus 320 h---------lK~yaPLL~af~s~g~sEL~Ll~ 343 (412)
T KOG2297|consen 320 H---------LKQYAPLLAAFCSQGQSELELLL 343 (412)
T ss_pred H---------HHhhhHHHHHHhcCChHHHHHHH
Confidence 2 23566788888888887766543
No 496
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.78 E-value=7.5e+02 Score=25.84 Aligned_cols=157 Identities=14% Similarity=0.071 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---------CCCCCHH
Q 046719 522 YNMLIDGSCTMGRIKDAFKFFDEMVKRE--MGPTLVTFNALINGLCKKGRVMEAEDMLPQITSS---------GLNPDVI 590 (808)
Q Consensus 522 ~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~ 590 (808)
+.-+.+.|..+|+++.|++.|.+....- ..-....|..++..-.-.|+|.....+..+.... .+++...
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~ 232 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK 232 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Confidence 4445555555666666666665543320 0001222333333333445555444444444332 0122233
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCcCHHhHHHHHHHHHHcCHH------HHHHHHHHHHHCCCCCCH
Q 046719 591 TYNSLISGYSSLGSSQKCLELYENMKKL------GIKPSLRTYHPLLSGCIREGIV------AVEKLFNEMLQINLVPDL 658 (808)
Q Consensus 591 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~~~~------~a~~~~~~~~~~~~~~~~ 658 (808)
.+..+.... .+++..|...|-..... -+.|...+....+.++..-+-. .....|+...+ +.|.
T Consensus 233 C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle--l~Pq- 307 (466)
T KOG0686|consen 233 CAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE--LEPQ- 307 (466)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh--cChH-
Confidence 344443333 33555555554433211 1234333333333443333311 11223444443 2333
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVD 686 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 686 (808)
.+..+..-| .+++...+++++++..
T Consensus 308 -lr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 308 -LREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred -HHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 333343333 3677777887777654
No 497
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=26.75 E-value=6.4e+02 Score=25.01 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=79.0
Q ss_pred cCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cC-CHhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCChhH
Q 046719 671 HGDVQKALVLHSEMVD-QGIRPDKMTYNSLIFGHLR-EG-KLSEVKELVNDMK-VKGLIPKADTYNILVKGYCNLKDFGG 746 (808)
Q Consensus 671 ~g~~~~A~~~~~~~~~-~g~~pd~~~~~~l~~~~~~-~g-~~~~A~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~g~~~~ 746 (808)
...+.+|+++|+..-- ..+--|..+...++..... .+ ....-.++.+-+. +.|-.++..+....+..+++.++|.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 4456778888773211 1133355555555555554 22 2333334444443 23346677777888999999999999
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 046719 747 AYIWYREMFEN-GFIPSFCIYNELTNGLKQEGKLKEAQILCSE 788 (808)
Q Consensus 747 A~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~ 788 (808)
-.++++..... ++..|...|..++..-.+.|+.+-..+++++
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 99999998875 7777999999999999999997766555543
No 498
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.46 E-value=2.5e+02 Score=22.40 Aligned_cols=48 Identities=10% Similarity=-0.078 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 710 SEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
..-.+.++++..++....+.....|+-.|...|+-+.|.+-|+.=...
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal 101 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL 101 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh
Confidence 333445555554443333344456666777777777777777664433
No 499
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.22 E-value=4.6e+02 Score=29.11 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChH------HHHHHHHHHHHCCCCCCHhhHHHH
Q 046719 419 TLIDKFCELGEMDKAEEWVKRMLEK--GVSPNVKTNNTLIDGYGRMGHFD------KCFQILEEMENSGMKPNVVSYGSL 490 (808)
Q Consensus 419 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~m~~~~~~~~~~~~~~l 490 (808)
+|+.+|..+|++-.+.++++..... |-+.=...||..+.-..+.|.++ .|.+++++..-.| |..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~---d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNG---DSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCC---cchHHHHH
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHH
Q 046719 491 INWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNML 525 (808)
Q Consensus 491 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 525 (808)
+.+-..--+-.-..-++.++..+...--..++...
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~~s~ngv~di~~~~ 144 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIHRSANGVIDILMHE 144 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHHhhhhhHHHHHhhh
No 500
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.62 E-value=9.3e+02 Score=26.52 Aligned_cols=156 Identities=11% Similarity=-0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-----------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH--------------------HC
Q 046719 639 IVAVEKLFNEMLQ-----------INLVPDLLVYNALIHCYAEHGDVQKALVLHSEMV--------------------DQ 687 (808)
Q Consensus 639 ~~~a~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------------~~ 687 (808)
++++...|.-.+. ..-+-.+.+.-.+.+++-..|+.+.|..+.++.+ ..
T Consensus 254 Yeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y 333 (665)
T KOG2422|consen 254 YEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPY 333 (665)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcc
Q ss_pred CCCCCHHHHHHH---HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCChhHHHHHHHHHHHCCC---C
Q 046719 688 GIRPDKMTYNSL---IFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYC-NLKDFGGAYIWYREMFENGF---I 760 (808)
Q Consensus 688 g~~pd~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~---~ 760 (808)
..+-|...|.+| +..+.+.|.+.-|.++.+-+......-|+.....+++.|+ +..+|+--++++++....+. -
T Consensus 334 ~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~ 413 (665)
T KOG2422|consen 334 IYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQL 413 (665)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhc
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCC
Q 046719 761 PSFCIYNELTNGLKQEGK---LKEAQILCSEISIVGK 794 (808)
Q Consensus 761 ~~~~~~~~l~~~l~~~g~---~~~A~~~~~~~~~~~~ 794 (808)
|+...-..|+..|..... -+.|...+.++++.-|
T Consensus 414 PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 414 PNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred CCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Done!