Query 046719
Match_columns 808
No_of_seqs 766 out of 4357
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 06:04:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 9.1E-41 3.1E-45 376.3 42.1 523 214-774 63-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 9.9E-40 3.4E-44 367.8 43.3 490 111-617 65-578 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1E-26 3.5E-31 246.0 49.8 379 388-778 8-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5.4E-26 1.9E-30 240.4 49.4 382 350-743 5-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 8.1E-29 2.8E-33 265.2 24.4 205 117-321 8-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.3E-28 4.5E-33 263.6 23.7 203 154-356 10-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 2.6E-24 8.9E-29 237.2 37.9 233 556-796 239-482 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.8E-23 6.3E-28 230.3 40.4 276 484-769 186-489 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 2.3E-22 7.7E-27 217.4 39.2 368 397-798 10-416 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.7E-22 5.8E-27 223.9 38.1 234 557-796 246-495 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 1.1E-21 3.9E-26 211.9 42.7 385 361-782 9-444 (450)
12 3fp2_A TPR repeat-containing p 99.9 3.9E-21 1.3E-25 213.0 36.9 441 134-618 25-491 (537)
13 1xi4_A Clathrin heavy chain; a 99.9 1.1E-16 3.7E-21 180.6 68.9 597 103-789 843-1531(1630)
14 3ieg_A DNAJ homolog subfamily 99.9 4.3E-19 1.5E-23 185.1 38.6 318 449-798 3-341 (359)
15 1xi4_A Clathrin heavy chain; a 99.9 1.1E-15 3.9E-20 172.4 67.9 378 137-574 988-1375(1630)
16 3ieg_A DNAJ homolog subfamily 99.9 9.9E-19 3.4E-23 182.4 38.5 331 413-776 2-353 (359)
17 2xm6_A Protein corresponding t 99.9 3.3E-17 1.1E-21 178.3 51.0 383 378-792 38-467 (490)
18 2xm6_A Protein corresponding t 99.9 9.2E-17 3.2E-21 174.8 52.8 364 399-795 27-435 (490)
19 3hym_B Cell division cycle pro 99.8 2.8E-18 9.6E-23 176.6 33.2 292 481-779 19-321 (330)
20 2ooe_A Cleavage stimulation fa 99.8 7.8E-17 2.7E-21 177.3 45.0 431 332-796 2-496 (530)
21 3hym_B Cell division cycle pro 99.8 4E-18 1.4E-22 175.5 31.0 278 515-798 18-305 (330)
22 2ooe_A Cleavage stimulation fa 99.8 1.6E-16 5.4E-21 174.9 45.5 428 131-618 10-492 (530)
23 1fch_A Peroxisomal targeting s 99.8 5.6E-18 1.9E-22 177.4 27.2 264 521-791 66-358 (368)
24 4g1t_A Interferon-induced prot 99.8 4.6E-16 1.6E-20 168.9 37.3 388 378-798 50-465 (472)
25 1fch_A Peroxisomal targeting s 99.8 2.5E-17 8.6E-22 172.4 26.2 287 461-755 37-357 (368)
26 4eqf_A PEX5-related protein; a 99.8 4.4E-17 1.5E-21 170.3 25.9 264 519-789 65-353 (365)
27 1b89_A Protein (clathrin heavy 99.8 1.9E-17 6.4E-22 168.0 21.9 375 356-787 15-412 (449)
28 3mkr_A Coatomer subunit epsilo 99.8 1E-16 3.6E-21 160.1 26.6 257 494-798 9-270 (291)
29 3cv0_A Peroxisome targeting si 99.8 5E-17 1.7E-21 167.0 24.8 268 521-795 23-318 (327)
30 1b89_A Protein (clathrin heavy 99.8 1E-16 3.5E-21 162.6 25.8 182 111-328 15-196 (449)
31 4g1t_A Interferon-induced prot 99.8 2.4E-15 8.1E-20 163.3 36.4 388 340-760 47-462 (472)
32 3mkr_A Coatomer subunit epsilo 99.7 7E-16 2.4E-20 154.1 28.6 257 456-760 6-267 (291)
33 4eqf_A PEX5-related protein; a 99.7 2.3E-16 7.9E-21 164.8 25.1 260 485-753 66-352 (365)
34 3spa_A Mtrpol, DNA-directed RN 99.7 5.3E-18 1.8E-22 185.3 12.1 118 168-285 126-247 (1134)
35 3cv0_A Peroxisome targeting si 99.7 7.5E-16 2.6E-20 158.1 26.0 263 486-756 23-314 (327)
36 3spa_A Mtrpol, DNA-directed RN 99.7 1.7E-17 5.9E-22 181.3 11.9 120 133-252 126-249 (1134)
37 2pl2_A Hypothetical conserved 99.7 2.9E-15 1E-19 142.8 21.3 199 552-791 3-213 (217)
38 3uq3_A Heat shock protein STI1 99.7 8.2E-15 2.8E-19 144.5 24.5 226 519-793 5-237 (258)
39 3uq3_A Heat shock protein STI1 99.7 1.6E-14 5.6E-19 142.3 25.2 227 483-758 4-237 (258)
40 3e4b_A ALGK; tetratricopeptide 99.7 1.2E-14 4E-19 155.4 25.4 221 556-793 178-422 (452)
41 1ouv_A Conserved hypothetical 99.6 4.5E-13 1.5E-17 133.2 32.9 226 518-795 5-254 (273)
42 3u4t_A TPR repeat-containing p 99.6 5.4E-14 1.9E-18 139.9 24.3 233 560-798 9-256 (272)
43 3e4b_A ALGK; tetratricopeptide 99.6 1.5E-13 5.1E-18 146.8 27.3 220 521-756 178-420 (452)
44 3u4t_A TPR repeat-containing p 99.6 9.6E-14 3.3E-18 138.0 24.2 250 522-777 6-269 (272)
45 2pl2_A Hypothetical conserved 99.6 4.6E-14 1.6E-18 134.5 20.8 197 133-335 4-211 (217)
46 1ouv_A Conserved hypothetical 99.6 1.7E-12 5.9E-17 129.0 33.2 227 482-760 4-254 (273)
47 2ho1_A Type 4 fimbrial biogene 99.6 3E-13 1E-17 132.7 26.2 204 591-798 39-244 (252)
48 2h6f_A Protein farnesyltransfe 99.6 7.4E-14 2.5E-18 144.1 22.5 233 555-796 98-352 (382)
49 4e6h_A MRNA 3'-END-processing 99.6 4.2E-11 1.4E-15 131.8 45.3 475 114-634 47-584 (679)
50 2q7f_A YRRB protein; TPR, prot 99.6 1.1E-13 3.6E-18 135.1 21.0 203 591-798 25-228 (243)
51 2h6f_A Protein farnesyltransfe 99.6 2.4E-13 8.2E-18 140.3 24.5 246 520-775 98-365 (382)
52 2vq2_A PILW, putative fimbrial 99.6 7.6E-13 2.6E-17 127.1 26.6 205 590-798 9-217 (225)
53 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.5E-13 5.1E-18 136.9 21.0 244 497-786 18-269 (275)
54 4e6h_A MRNA 3'-END-processing 99.6 9.1E-11 3.1E-15 129.2 44.7 444 290-760 48-573 (679)
55 1xnf_A Lipoprotein NLPI; TPR, 99.5 2E-13 7E-18 135.9 20.1 225 568-798 19-250 (275)
56 2q7f_A YRRB protein; TPR, prot 99.5 3.7E-13 1.3E-17 131.1 21.5 211 557-773 26-237 (243)
57 2ho1_A Type 4 fimbrial biogene 99.5 3.9E-12 1.3E-16 124.7 26.8 207 520-765 38-245 (252)
58 3vtx_A MAMA; tetratricopeptide 99.5 8.8E-13 3E-17 122.2 20.9 169 623-796 4-174 (184)
59 4a1s_A PINS, partner of inscut 99.5 3E-13 1E-17 143.6 19.8 274 490-793 54-373 (411)
60 2vq2_A PILW, putative fimbrial 99.5 4.6E-12 1.6E-16 121.6 24.8 195 104-301 13-209 (225)
61 3sf4_A G-protein-signaling mod 99.5 4.5E-13 1.5E-17 142.0 19.0 301 448-780 8-364 (406)
62 3ro2_A PINS homolog, G-protein 99.5 7.3E-13 2.5E-17 136.2 19.4 274 491-794 12-334 (338)
63 3sf4_A G-protein-signaling mod 99.5 2E-12 6.9E-17 136.9 21.5 283 481-793 6-337 (406)
64 3nf1_A KLC 1, kinesin light ch 99.5 9E-13 3.1E-17 133.9 17.6 250 518-795 26-310 (311)
65 2ond_A Cleavage stimulation fa 99.5 3.5E-11 1.2E-15 121.7 29.0 234 519-758 8-271 (308)
66 4abn_A Tetratricopeptide repea 99.5 1.8E-12 6E-17 139.4 20.5 193 588-788 101-317 (474)
67 4a1s_A PINS, partner of inscut 99.5 1.9E-12 6.4E-17 137.5 19.6 282 416-758 50-373 (411)
68 3ulq_A Response regulator aspa 99.4 4.9E-12 1.7E-16 132.7 21.0 233 562-797 111-373 (383)
69 2ond_A Cleavage stimulation fa 99.4 1.6E-10 5.3E-15 116.8 29.8 184 606-795 81-273 (308)
70 3vtx_A MAMA; tetratricopeptide 99.4 3.8E-11 1.3E-15 111.0 21.6 167 553-759 4-172 (184)
71 3ro2_A PINS homolog, G-protein 99.4 1.1E-11 3.9E-16 127.2 19.7 276 137-443 8-332 (338)
72 4gyw_A UDP-N-acetylglucosamine 99.4 1.3E-11 4.3E-16 137.8 20.0 165 624-794 9-176 (723)
73 3ulq_A Response regulator aspa 99.4 1.2E-10 4E-15 122.1 26.2 233 492-757 111-368 (383)
74 4abn_A Tetratricopeptide repea 99.4 1.9E-11 6.6E-16 131.3 20.6 210 536-754 85-318 (474)
75 3as5_A MAMA; tetratricopeptide 99.4 4.2E-11 1.4E-15 110.7 19.6 168 627-798 11-179 (186)
76 4i17_A Hypothetical protein; T 99.3 7.2E-11 2.5E-15 113.5 20.7 199 587-798 5-215 (228)
77 3nf1_A KLC 1, kinesin light ch 99.3 2.4E-11 8.1E-16 123.3 16.7 168 135-302 28-223 (311)
78 3q15_A PSP28, response regulat 99.3 4.1E-10 1.4E-14 117.7 24.8 226 563-792 110-365 (378)
79 1hz4_A MALT regulatory protein 99.3 1.1E-09 3.6E-14 114.4 27.9 299 488-794 18-351 (373)
80 4i17_A Hypothetical protein; T 99.3 3.8E-10 1.3E-14 108.4 22.4 208 552-772 5-223 (228)
81 1hz4_A MALT regulatory protein 99.3 1.1E-09 3.9E-14 114.1 26.6 160 142-301 22-201 (373)
82 3q15_A PSP28, response regulat 99.3 6E-10 2E-14 116.4 24.2 229 526-757 108-365 (378)
83 4gyw_A UDP-N-acetylglucosamine 99.2 2.9E-10 1E-14 126.9 20.5 162 590-757 10-174 (723)
84 3mv2_B Coatomer subunit epsilo 99.2 3.8E-09 1.3E-13 102.7 24.1 184 608-799 85-289 (310)
85 3edt_B KLC 2, kinesin light ch 99.2 2.7E-10 9.1E-15 113.6 16.7 227 565-792 12-281 (283)
86 3as5_A MAMA; tetratricopeptide 99.2 7.2E-10 2.5E-14 102.3 18.4 164 593-760 12-176 (186)
87 2fo7_A Synthetic consensus TPR 99.2 9.4E-10 3.2E-14 95.3 17.8 133 660-795 3-135 (136)
88 4ga2_A E3 SUMO-protein ligase 99.2 6.8E-11 2.3E-15 104.6 9.1 125 668-797 7-134 (150)
89 1qqe_A Vesicular transport pro 99.2 6.5E-10 2.2E-14 111.1 17.0 214 534-794 32-271 (292)
90 3urz_A Uncharacterized protein 99.1 6E-10 2.1E-14 105.0 14.1 183 590-798 5-192 (208)
91 3qky_A Outer membrane assembly 99.1 2.7E-09 9.1E-14 104.9 19.4 136 659-798 53-230 (261)
92 3edt_B KLC 2, kinesin light ch 99.1 1.1E-09 3.8E-14 109.0 15.9 228 530-757 12-281 (283)
93 1qqe_A Vesicular transport pro 99.1 8.7E-10 3E-14 110.2 14.9 162 635-798 48-234 (292)
94 4ga2_A E3 SUMO-protein ligase 99.1 3.2E-10 1.1E-14 100.3 10.4 133 639-778 13-149 (150)
95 2uy1_A Cleavage stimulation fa 99.1 2.1E-07 7.2E-12 99.6 33.4 104 146-267 6-117 (493)
96 2yhc_A BAMD, UPF0169 lipoprote 99.1 6.5E-09 2.2E-13 99.3 19.6 190 589-798 4-219 (225)
97 4gco_A Protein STI-1; structur 99.1 1.6E-09 5.5E-14 92.2 13.1 107 689-798 8-116 (126)
98 2pzi_A Probable serine/threoni 99.1 2.2E-09 7.5E-14 120.8 17.8 144 627-777 436-582 (681)
99 3gyz_A Chaperone protein IPGC; 99.0 1.1E-09 3.7E-14 96.2 11.2 105 689-796 31-137 (151)
100 3qky_A Outer membrane assembly 99.0 9.7E-09 3.3E-13 100.8 18.9 208 552-782 13-251 (261)
101 2uy1_A Cleavage stimulation fa 99.0 2.4E-07 8.3E-12 99.1 31.0 101 115-233 11-118 (493)
102 2vsy_A XCC0866; transferase, g 99.0 6E-09 2.1E-13 115.3 18.5 151 603-759 3-159 (568)
103 3dra_A Protein farnesyltransfe 99.0 1E-07 3.5E-12 94.0 25.1 213 571-791 50-286 (306)
104 2r5s_A Uncharacterized protein 99.0 2.6E-09 9E-14 97.5 12.9 157 630-791 12-172 (176)
105 3mv2_B Coatomer subunit epsilo 99.0 9.3E-08 3.2E-12 93.0 24.3 186 538-760 85-285 (310)
106 3rjv_A Putative SEL1 repeat pr 99.0 4.8E-08 1.6E-12 92.1 21.9 175 608-794 5-199 (212)
107 3qou_A Protein YBBN; thioredox 99.0 8.8E-09 3E-13 102.4 17.0 165 622-791 115-283 (287)
108 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.2E-08 4.2E-13 96.5 17.0 129 662-795 10-153 (213)
109 2vgx_A Chaperone SYCD; alterna 99.0 1.6E-09 5.5E-14 95.4 10.0 101 695-798 23-124 (148)
110 3urz_A Uncharacterized protein 99.0 1.5E-08 5.1E-13 95.3 17.3 161 137-302 7-185 (208)
111 2fo7_A Synthetic consensus TPR 99.0 2.6E-08 9E-13 85.9 17.2 129 136-267 3-131 (136)
112 2pzi_A Probable serine/threoni 99.0 3E-09 1E-13 119.7 13.9 153 639-798 407-569 (681)
113 2ifu_A Gamma-SNAP; membrane fu 99.0 4E-09 1.4E-13 106.3 13.0 222 532-784 4-253 (307)
114 4gco_A Protein STI-1; structur 99.0 1.4E-08 4.7E-13 86.4 14.4 115 654-773 8-125 (126)
115 3rjv_A Putative SEL1 repeat pr 98.9 1.2E-07 4E-12 89.4 21.5 178 537-760 4-200 (212)
116 2r5s_A Uncharacterized protein 98.9 1.3E-08 4.5E-13 92.8 13.5 161 137-301 9-171 (176)
117 3dra_A Protein farnesyltransfe 98.9 7.8E-07 2.7E-11 87.6 25.6 221 111-336 45-285 (306)
118 2e2e_A Formate-dependent nitri 98.9 1.4E-08 4.9E-13 92.7 11.9 126 669-798 21-150 (177)
119 2ifu_A Gamma-SNAP; membrane fu 98.9 1E-08 3.5E-13 103.3 11.8 223 496-749 3-253 (307)
120 3qou_A Protein YBBN; thioredox 98.9 6.7E-08 2.3E-12 96.0 17.3 167 131-301 114-282 (287)
121 2xcb_A PCRH, regulatory protei 98.8 1.1E-08 3.9E-13 89.3 10.3 100 695-797 20-120 (142)
122 1a17_A Serine/threonine protei 98.8 1.1E-07 3.7E-12 85.7 16.3 131 658-791 13-145 (166)
123 1p5q_A FKBP52, FK506-binding p 98.8 3.7E-08 1.3E-12 100.3 14.5 129 658-791 147-293 (336)
124 2yhc_A BAMD, UPF0169 lipoprote 98.8 3.1E-07 1.1E-11 87.5 19.8 60 279-340 152-215 (225)
125 2vsy_A XCC0866; transferase, g 98.8 1.2E-07 4.2E-12 104.8 19.2 154 639-798 5-163 (568)
126 3u3w_A Transcriptional activat 98.8 7.5E-07 2.6E-11 88.9 22.9 162 631-792 82-266 (293)
127 4f3v_A ESX-1 secretion system 98.8 1.9E-07 6.5E-12 89.6 17.5 133 660-795 104-240 (282)
128 4gcn_A Protein STI-1; structur 98.8 3.9E-08 1.3E-12 83.7 11.1 97 696-794 11-114 (127)
129 3gyz_A Chaperone protein IPGC; 98.8 4.9E-08 1.7E-12 85.5 11.8 100 657-760 35-136 (151)
130 3sz7_A HSC70 cochaperone (SGT) 98.8 7.8E-08 2.7E-12 86.4 13.2 105 657-766 10-116 (164)
131 2lni_A Stress-induced-phosphop 98.8 1.5E-07 5.2E-12 80.9 14.2 118 656-778 14-133 (133)
132 2vyi_A SGTA protein; chaperone 98.7 2.1E-07 7.1E-12 79.6 14.9 119 657-779 11-130 (131)
133 3upv_A Heat shock protein STI1 98.7 7.7E-08 2.7E-12 81.9 11.7 94 660-757 6-101 (126)
134 1na0_A Designed protein CTPR3; 98.7 2.8E-07 9.5E-12 78.0 15.2 117 658-777 9-125 (125)
135 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.7E-07 9.4E-12 87.1 16.2 125 631-760 13-153 (213)
136 1hxi_A PEX5, peroxisome target 98.7 7.9E-08 2.7E-12 81.0 10.7 99 695-796 19-118 (121)
137 2qfc_A PLCR protein; TPR, HTH, 98.7 1.2E-06 4.2E-11 87.3 20.6 130 662-791 119-265 (293)
138 3upv_A Heat shock protein STI1 98.7 3E-07 1E-11 78.2 13.4 98 693-793 4-102 (126)
139 2vgx_A Chaperone SYCD; alterna 98.7 2.5E-07 8.6E-12 81.1 13.1 110 646-760 10-121 (148)
140 4gcn_A Protein STI-1; structur 98.7 1.9E-07 6.6E-12 79.4 11.6 107 659-769 9-122 (127)
141 3q7a_A Farnesyltransferase alp 98.7 8.8E-06 3E-10 80.9 25.0 176 109-289 64-257 (349)
142 2qfc_A PLCR protein; TPR, HTH, 98.6 3.2E-06 1.1E-10 84.2 22.1 163 594-756 80-265 (293)
143 2hr2_A Hypothetical protein; a 98.6 1.5E-07 5.2E-12 81.1 10.5 100 696-798 14-137 (159)
144 3u3w_A Transcriptional activat 98.6 2.9E-06 9.8E-11 84.6 21.5 161 596-756 82-265 (293)
145 2fbn_A 70 kDa peptidylprolyl i 98.6 3.3E-07 1.1E-11 85.3 13.6 131 659-793 39-187 (198)
146 3gw4_A Uncharacterized protein 98.6 2.5E-07 8.6E-12 86.5 12.9 153 639-792 8-176 (203)
147 2dba_A Smooth muscle cell asso 98.6 5.8E-07 2E-11 78.9 14.2 110 657-771 27-141 (148)
148 3dss_A Geranylgeranyl transfer 98.6 1.4E-05 4.7E-10 79.2 25.4 151 639-794 126-306 (331)
149 3q7a_A Farnesyltransferase alp 98.6 1.6E-05 5.5E-10 79.0 25.8 173 147-324 67-257 (349)
150 2xcb_A PCRH, regulatory protei 98.6 1.3E-07 4.6E-12 82.4 9.7 100 657-760 17-118 (142)
151 2c2l_A CHIP, carboxy terminus 98.6 1.4E-07 4.8E-12 93.3 11.0 192 591-793 6-200 (281)
152 1elw_A TPR1-domain of HOP; HOP 98.6 6.2E-07 2.1E-11 74.9 13.3 107 659-769 5-112 (118)
153 2xev_A YBGF; tetratricopeptide 98.6 3.1E-07 1.1E-11 78.5 11.5 94 699-795 8-108 (129)
154 3q49_B STIP1 homology and U bo 98.6 4.7E-07 1.6E-11 78.3 12.6 97 657-757 8-106 (137)
155 2lni_A Stress-induced-phosphop 98.6 5.6E-07 1.9E-11 77.2 12.7 104 692-798 15-119 (133)
156 2kck_A TPR repeat; tetratricop 98.6 6.4E-07 2.2E-11 74.0 12.6 104 693-797 6-111 (112)
157 1elw_A TPR1-domain of HOP; HOP 98.6 1.7E-06 5.8E-11 72.2 15.1 103 693-798 4-107 (118)
158 1na0_A Designed protein CTPR3; 98.6 1E-06 3.5E-11 74.4 13.9 104 693-798 9-112 (125)
159 4f3v_A ESX-1 secretion system 98.6 6.2E-07 2.1E-11 86.0 13.4 189 146-338 18-237 (282)
160 3sz7_A HSC70 cochaperone (SGT) 98.5 8E-07 2.7E-11 79.7 13.2 104 692-798 10-114 (164)
161 2dba_A Smooth muscle cell asso 98.5 2E-06 6.9E-11 75.3 15.5 104 692-798 27-134 (148)
162 1a17_A Serine/threonine protei 98.5 2.8E-06 9.5E-11 76.2 16.2 128 135-265 14-143 (166)
163 2if4_A ATFKBP42; FKBP-like, al 98.5 1.8E-07 6.1E-12 95.2 8.8 134 660-798 181-334 (338)
164 2vyi_A SGTA protein; chaperone 98.5 1.7E-06 5.7E-11 73.8 13.4 105 692-798 11-115 (131)
165 3rkv_A Putative peptidylprolyl 98.5 5.3E-07 1.8E-11 80.7 10.3 101 658-760 11-129 (162)
166 2c2l_A CHIP, carboxy terminus 98.5 2.9E-07 9.8E-12 91.0 9.0 99 133-233 3-101 (281)
167 3dss_A Geranylgeranyl transfer 98.5 2.7E-05 9.3E-10 77.1 23.0 154 639-796 90-271 (331)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 7.7E-07 2.6E-11 94.7 12.8 128 658-790 268-413 (457)
169 2e2e_A Formate-dependent nitri 98.5 1.3E-06 4.4E-11 79.6 12.5 118 639-760 26-147 (177)
170 3ro3_A PINS homolog, G-protein 98.5 9.4E-07 3.2E-11 78.9 11.3 136 658-793 9-159 (164)
171 3q49_B STIP1 homology and U bo 98.5 1.9E-06 6.4E-11 74.4 12.6 102 691-795 7-109 (137)
172 2kck_A TPR repeat; tetratricop 98.4 1.5E-06 5.1E-11 71.7 11.4 101 657-760 5-109 (112)
173 2xev_A YBGF; tetratricopeptide 98.4 3.7E-06 1.3E-10 71.6 14.0 101 661-766 5-113 (129)
174 2fbn_A 70 kDa peptidylprolyl i 98.4 2.9E-07 9.9E-12 85.7 7.4 130 664-798 10-157 (198)
175 3k9i_A BH0479 protein; putativ 98.4 2.3E-07 8E-12 77.6 6.1 88 671-760 3-93 (117)
176 3rkv_A Putative peptidylprolyl 98.4 1.3E-06 4.5E-11 78.1 11.4 101 696-797 14-131 (162)
177 1elr_A TPR2A-domain of HOP; HO 98.4 1.6E-06 5.5E-11 74.0 11.4 112 659-773 5-122 (131)
178 1hxi_A PEX5, peroxisome target 98.4 1.2E-06 4.2E-11 73.5 9.7 97 660-760 19-117 (121)
179 1wao_1 Serine/threonine protei 98.4 5.5E-07 1.9E-11 96.2 9.4 120 663-787 11-134 (477)
180 3gw4_A Uncharacterized protein 98.4 6.1E-06 2.1E-10 76.9 15.6 132 204-335 26-173 (203)
181 1ihg_A Cyclophilin 40; ppiase 98.4 2.4E-06 8.3E-11 87.7 13.4 123 660-785 225-363 (370)
182 1elr_A TPR2A-domain of HOP; HO 98.4 2.6E-06 8.9E-11 72.6 11.6 101 694-795 5-111 (131)
183 2hr2_A Hypothetical protein; a 98.4 1.1E-06 3.6E-11 75.9 8.5 98 659-760 12-134 (159)
184 1p5q_A FKBP52, FK506-binding p 98.4 7.4E-06 2.5E-10 83.2 16.1 131 133-265 146-291 (336)
185 3k9i_A BH0479 protein; putativ 98.3 9.7E-07 3.3E-11 73.8 6.6 93 705-798 2-96 (117)
186 1dce_A Protein (RAB geranylger 98.3 1.2E-05 4.3E-10 87.3 17.0 155 639-798 45-227 (567)
187 1zu2_A Mitochondrial import re 98.2 2.6E-06 8.9E-11 73.3 6.8 88 669-760 13-123 (158)
188 4b4t_Q 26S proteasome regulato 98.2 0.00011 3.8E-09 77.8 21.0 196 561-756 11-244 (434)
189 1dce_A Protein (RAB geranylger 98.2 6.1E-05 2.1E-09 81.9 18.9 138 639-781 89-244 (567)
190 1klx_A Cysteine rich protein B 98.2 5E-05 1.7E-09 65.2 14.7 110 673-793 10-127 (138)
191 2l6j_A TPR repeat-containing p 98.2 1.4E-06 4.8E-11 71.9 4.6 94 692-788 3-103 (111)
192 4b4t_Q 26S proteasome regulato 98.1 6.2E-05 2.1E-09 79.8 18.1 197 525-721 10-244 (434)
193 1wao_1 Serine/threonine protei 98.1 1E-05 3.5E-10 86.4 11.7 109 639-752 22-134 (477)
194 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 1.5E-05 5.3E-10 84.7 12.8 123 671-798 247-386 (457)
195 2kat_A Uncharacterized protein 98.1 1.1E-05 3.6E-10 67.1 8.5 79 676-758 3-83 (115)
196 2if4_A ATFKBP42; FKBP-like, al 98.1 8.8E-06 3E-10 82.6 9.4 102 694-798 180-299 (338)
197 1ihg_A Cyclophilin 40; ppiase 98.0 2E-05 6.7E-10 80.9 11.6 103 695-798 225-342 (370)
198 3ro3_A PINS homolog, G-protein 98.0 3.2E-05 1.1E-09 68.6 11.3 137 590-757 10-158 (164)
199 1klx_A Cysteine rich protein B 98.0 0.0002 6.8E-09 61.4 15.7 111 639-760 11-129 (138)
200 3ma5_A Tetratricopeptide repea 98.0 1.8E-05 6.1E-10 63.7 7.4 64 692-757 6-70 (100)
201 3n71_A Histone lysine methyltr 97.9 5E-05 1.7E-09 80.3 12.0 127 667-793 318-465 (490)
202 1na3_A Designed protein CTPR2; 97.9 8.8E-05 3E-09 58.1 10.6 81 694-777 10-91 (91)
203 2kat_A Uncharacterized protein 97.9 3.9E-05 1.3E-09 63.6 8.2 81 711-794 3-84 (115)
204 1zu2_A Mitochondrial import re 97.9 2E-05 6.8E-10 67.8 6.3 90 706-798 15-126 (158)
205 2l6j_A TPR repeat-containing p 97.8 2.2E-05 7.4E-10 64.5 6.2 93 657-753 3-103 (111)
206 1pc2_A Mitochondria fission pr 97.8 9.3E-05 3.2E-09 62.8 9.1 88 710-798 15-106 (152)
207 2kc7_A BFR218_protein; tetratr 97.7 5.9E-05 2E-09 60.4 5.8 88 698-796 5-94 (99)
208 1na3_A Designed protein CTPR2; 97.6 0.00026 9.1E-09 55.2 9.3 71 727-798 8-78 (91)
209 3ma5_A Tetratricopeptide repea 97.6 0.00019 6.6E-09 57.4 8.2 65 728-793 7-71 (100)
210 3bee_A Putative YFRE protein; 97.6 0.00068 2.3E-08 52.9 10.5 69 726-795 4-75 (93)
211 3n71_A Histone lysine methyltr 97.5 0.00038 1.3E-08 73.6 11.6 135 52-197 315-463 (490)
212 3ly7_A Transcriptional activat 97.4 0.0011 3.9E-08 65.6 12.1 65 692-758 276-340 (372)
213 2kc7_A BFR218_protein; tetratr 97.3 0.00068 2.3E-08 53.9 8.3 65 733-798 5-70 (99)
214 3ly7_A Transcriptional activat 97.3 0.0044 1.5E-07 61.5 14.3 67 727-795 276-342 (372)
215 1nzn_A CGI-135 protein, fissio 97.2 0.0014 4.7E-08 53.4 8.7 90 708-798 16-109 (126)
216 2v5f_A Prolyl 4-hydroxylase su 97.2 0.0017 5.9E-08 52.1 9.1 73 694-767 6-84 (104)
217 3u64_A Protein TP_0956; tetrat 97.2 0.017 5.8E-07 54.7 16.6 105 674-790 179-296 (301)
218 3qww_A SET and MYND domain-con 97.1 0.0017 5.6E-08 67.5 9.8 87 670-756 310-410 (433)
219 3qww_A SET and MYND domain-con 97.0 0.003 1E-07 65.6 10.8 94 705-798 310-422 (433)
220 3u64_A Protein TP_0956; tetrat 96.9 0.0065 2.2E-07 57.6 11.4 83 639-725 179-272 (301)
221 1pc2_A Mitochondria fission pr 96.9 0.0069 2.4E-07 51.4 10.5 86 673-760 13-103 (152)
222 3qwp_A SET and MYND domain-con 96.8 0.0046 1.6E-07 64.3 10.6 92 665-756 294-399 (429)
223 3bee_A Putative YFRE protein; 96.8 0.0055 1.9E-07 47.7 8.4 68 691-760 4-75 (93)
224 3qwp_A SET and MYND domain-con 96.8 0.0083 2.8E-07 62.4 12.2 99 700-798 294-411 (429)
225 2v5f_A Prolyl 4-hydroxylase su 96.7 0.014 4.6E-07 46.8 10.4 68 729-796 6-79 (104)
226 1y8m_A FIS1; mitochondria, unk 96.6 0.035 1.2E-06 45.9 11.9 74 725-798 36-112 (144)
227 3o48_A Mitochondria fission 1 96.5 0.019 6.5E-07 46.8 9.8 75 724-798 36-113 (134)
228 4h7y_A Dual specificity protei 96.2 0.065 2.2E-06 44.6 11.3 105 655-761 10-127 (161)
229 3mkq_A Coatomer beta'-subunit; 96.1 0.23 7.7E-06 57.1 20.4 46 564-615 662-707 (814)
230 3mkq_A Coatomer beta'-subunit; 96.0 0.3 1E-05 56.1 20.9 129 313-474 633-761 (814)
231 3lvg_A Clathrin heavy chain 1; 95.8 3.9E-05 1.3E-09 77.0 -11.1 224 98-357 53-276 (624)
232 1nzn_A CGI-135 protein, fissio 95.7 0.052 1.8E-06 44.2 8.7 90 673-765 16-110 (126)
233 4ady_A RPN2, 26S proteasome re 95.7 3.8 0.00013 46.2 40.3 314 457-778 382-721 (963)
234 3mkq_B Coatomer subunit alpha; 95.0 0.52 1.8E-05 41.0 13.1 125 635-789 16-141 (177)
235 4h7y_A Dual specificity protei 94.7 0.37 1.3E-05 40.2 10.7 104 131-236 10-126 (161)
236 3mkq_B Coatomer subunit alpha; 94.7 1.8 6.1E-05 37.7 15.6 45 145-195 16-60 (177)
237 1qsa_A Protein (soluble lytic 94.3 5.8 0.0002 42.9 22.3 156 417-583 10-167 (618)
238 4ady_A RPN2, 26S proteasome re 94.1 9.7 0.00033 43.0 41.7 25 207-231 233-257 (963)
239 3ffl_A Anaphase-promoting comp 94.1 0.16 5.5E-06 43.3 7.6 129 652-793 12-152 (167)
240 1y8m_A FIS1; mitochondria, unk 93.9 1.5 5E-05 36.4 12.6 74 690-764 36-112 (144)
241 1wy6_A Hypothetical protein ST 93.6 2.5 8.4E-05 34.5 17.2 63 697-760 95-157 (172)
242 3o48_A Mitochondria fission 1 93.6 0.75 2.6E-05 37.5 10.3 74 690-764 37-113 (134)
243 4gns_B Protein CSD3, chitin bi 93.0 0.75 2.6E-05 50.7 12.8 50 703-754 347-397 (754)
244 4gns_B Protein CSD3, chitin bi 92.7 0.51 1.7E-05 52.0 10.8 124 593-720 252-398 (754)
245 1wy6_A Hypothetical protein ST 91.5 5 0.00017 32.7 17.7 137 531-689 19-156 (172)
246 3ffl_A Anaphase-promoting comp 91.2 0.64 2.2E-05 39.7 7.4 140 619-773 13-165 (167)
247 3lvg_A Clathrin heavy chain 1; 91.1 6E-05 2E-09 75.7 -19.9 222 205-462 55-276 (624)
248 4fhn_B Nucleoporin NUP120; pro 90.4 5.2 0.00018 47.5 17.0 52 104-160 817-868 (1139)
249 2wpv_A GET4, UPF0363 protein Y 90.1 14 0.00048 35.7 21.7 190 46-302 13-216 (312)
250 2ff4_A Probable regulatory pro 88.9 2.8 9.7E-05 42.6 11.7 57 139-196 176-232 (388)
251 4b4t_P 26S proteasome regulato 88.1 26 0.0009 36.1 21.3 96 522-617 140-246 (445)
252 3lpz_A GET4 (YOR164C homolog); 88.0 21 0.0007 34.8 22.7 81 656-755 134-214 (336)
253 1qsa_A Protein (soluble lytic 86.8 38 0.0013 36.6 26.9 143 381-535 9-152 (618)
254 1zbp_A Hypothetical protein VP 86.7 1.5 5.2E-05 40.9 7.1 59 701-760 5-63 (273)
255 3lpz_A GET4 (YOR164C homolog); 85.9 27 0.00092 34.0 23.7 191 44-301 10-214 (336)
256 4fhn_B Nucleoporin NUP120; pro 85.8 13 0.00045 44.1 16.5 51 140-195 818-868 (1139)
257 4b4t_P 26S proteasome regulato 85.6 36 0.0012 35.1 21.7 93 489-581 142-245 (445)
258 2ff4_A Probable regulatory pro 84.2 2.9 0.0001 42.5 8.7 73 695-769 173-251 (388)
259 1zbp_A Hypothetical protein VP 83.3 4 0.00014 38.1 8.2 57 668-727 7-63 (273)
260 1v54_E Cytochrome C oxidase po 81.8 7.8 0.00027 29.7 7.7 59 711-770 28-86 (109)
261 1v54_E Cytochrome C oxidase po 80.9 7.6 0.00026 29.7 7.4 63 219-282 25-87 (109)
262 4b4t_R RPN7, 26S proteasome re 80.1 10 0.00035 39.0 11.2 119 639-757 110-237 (429)
263 4b4t_R RPN7, 26S proteasome re 78.1 11 0.00037 38.9 10.5 97 625-721 132-236 (429)
264 2wpv_A GET4, UPF0363 protein Y 77.4 53 0.0018 31.7 24.5 27 656-682 132-158 (312)
265 2y69_E Cytochrome C oxidase su 72.1 18 0.00062 29.4 7.7 61 221-282 70-130 (152)
266 2p58_C Putative type III secre 71.9 21 0.00072 27.2 7.5 78 184-269 22-99 (116)
267 2uwj_G Type III export protein 68.9 18 0.00061 27.5 6.6 78 184-269 21-98 (115)
268 3esl_A Checkpoint serine/threo 68.0 34 0.0012 30.3 9.4 53 709-761 95-148 (202)
269 2y69_E Cytochrome C oxidase su 67.3 50 0.0017 26.9 9.7 48 535-582 69-116 (152)
270 3txn_A 26S proteasome regulato 64.7 1.2E+02 0.0041 30.4 23.2 58 524-581 104-166 (394)
271 2uwj_G Type III export protein 62.8 49 0.0017 25.2 9.0 77 673-757 21-97 (115)
272 2p58_C Putative type III secre 62.8 49 0.0017 25.3 9.7 76 673-756 22-97 (116)
273 3esl_A Checkpoint serine/threo 62.2 44 0.0015 29.6 9.0 56 671-726 92-148 (202)
274 4a1g_A Mitotic checkpoint seri 57.1 71 0.0024 26.8 9.1 52 710-761 82-134 (152)
275 4b4t_S RPN3, 26S proteasome re 55.1 42 0.0014 34.9 9.0 125 132-263 229-365 (523)
276 3kea_A K1L; tropism, ANK repea 53.2 56 0.0019 31.1 9.4 12 247-258 67-78 (285)
277 1k1a_A B-cell lymphoma 3-encod 53.0 60 0.0021 29.5 9.4 18 250-267 17-34 (241)
278 1k1a_A B-cell lymphoma 3-encod 52.3 49 0.0017 30.2 8.7 20 179-198 16-35 (241)
279 1wdy_A 2-5A-dependent ribonucl 52.1 69 0.0024 30.0 10.0 8 425-432 227-234 (285)
280 2wvi_A Mitotic checkpoint seri 51.5 92 0.0031 26.6 9.0 54 710-763 77-131 (164)
281 3pvs_A Replication-associated 50.2 2.1E+02 0.0072 29.3 13.6 86 705-790 267-357 (447)
282 3ltm_A Alpha-REP4; protein eng 50.2 1.4E+02 0.0046 26.5 19.4 11 244-254 69-79 (211)
283 3eiq_C Programmed cell death p 50.1 1E+02 0.0035 30.4 10.5 24 137-160 57-80 (358)
284 1oyz_A Hypothetical protein YI 49.6 1.7E+02 0.0057 27.4 24.3 125 655-793 139-264 (280)
285 4a1g_A Mitotic checkpoint seri 48.1 1E+02 0.0035 25.9 8.6 52 675-726 82-134 (152)
286 3txn_A 26S proteasome regulato 47.2 2.3E+02 0.0079 28.3 27.7 93 489-581 104-208 (394)
287 2r9g_A AAA ATPase, central reg 46.7 1.5E+02 0.0052 26.1 9.8 37 146-183 26-62 (204)
288 3mv2_A Coatomer subunit alpha; 46.7 2.1E+02 0.007 27.6 12.7 76 708-798 185-262 (325)
289 1wdy_A 2-5A-dependent ribonucl 45.7 66 0.0023 30.1 8.7 6 355-360 113-118 (285)
290 3jxi_A Vanilloid receptor-rela 44.9 15 0.0005 34.5 3.6 19 423-441 231-249 (260)
291 2wvi_A Mitotic checkpoint seri 43.4 1.2E+02 0.0042 25.8 8.6 52 676-727 78-130 (164)
292 3eu9_A Huntingtin-interacting 43.3 44 0.0015 30.4 6.8 17 388-404 216-232 (240)
293 3ltm_A Alpha-REP4; protein eng 42.9 1.8E+02 0.006 25.7 21.0 154 132-302 31-184 (211)
294 2zu6_B Programmed cell death p 42.8 2.2E+02 0.0075 27.3 11.4 25 522-546 6-30 (307)
295 2qx5_A Nucleoporin NIC96; mRNA 40.3 3.9E+02 0.013 28.9 15.4 81 139-231 299-383 (661)
296 1n11_A Ankyrin; clathrin, BAND 39.4 2.1E+02 0.0073 28.9 12.0 7 390-396 220-226 (437)
297 3kea_A K1L; tropism, ANK repea 39.1 1.2E+02 0.004 28.7 9.2 10 425-434 169-178 (285)
298 3eu9_A Huntingtin-interacting 39.0 1E+02 0.0035 27.8 8.6 22 421-442 214-235 (240)
299 3jxi_A Vanilloid receptor-rela 36.9 51 0.0018 30.6 6.1 21 457-477 230-250 (260)
300 3hra_A Ankyrin repeat family p 36.1 84 0.0029 27.5 7.2 12 400-411 159-170 (201)
301 1n11_A Ankyrin; clathrin, BAND 35.3 3E+02 0.01 27.8 12.3 18 350-367 215-232 (437)
302 2zu6_B Programmed cell death p 34.8 1.5E+02 0.005 28.5 8.8 24 313-336 170-193 (307)
303 3ctd_A Putative ATPase, AAA fa 34.5 2.4E+02 0.0081 25.1 9.1 38 146-183 47-84 (213)
304 3bge_A Predicted ATPase; struc 34.3 1.9E+02 0.0065 25.4 8.3 38 146-183 19-56 (201)
305 4aez_C MAD3, mitotic spindle c 33.3 78 0.0027 28.6 6.0 52 710-761 131-183 (223)
306 4gq2_M Nucleoporin NUP120; bet 31.5 3E+02 0.01 31.5 12.3 132 104-253 815-950 (950)
307 3eiq_C Programmed cell death p 31.1 3.9E+02 0.013 26.2 12.6 26 521-546 56-81 (358)
308 2d2s_A Exocyst complex compone 29.8 3.2E+02 0.011 24.9 9.8 89 386-477 25-119 (235)
309 4aez_C MAD3, mitotic spindle c 29.4 70 0.0024 28.9 5.1 52 675-726 131-183 (223)
310 2r9g_A AAA ATPase, central reg 28.6 3E+02 0.01 24.2 9.2 38 669-707 25-62 (204)
311 2fe3_A Peroxide operon regulat 28.3 2E+02 0.0068 23.8 7.6 58 719-777 13-70 (145)
312 1mzb_A Ferric uptake regulatio 28.0 2.1E+02 0.0072 23.2 7.7 35 743-777 33-67 (136)
313 2xig_A Ferric uptake regulatio 27.1 2E+02 0.0068 24.0 7.4 59 719-778 18-76 (150)
314 3eyy_A Putative iron uptake re 27.1 1.6E+02 0.0054 24.4 6.7 57 719-777 10-66 (145)
315 4b4t_S RPN3, 26S proteasome re 27.0 1.5E+02 0.0052 30.8 7.7 67 694-760 232-302 (523)
316 3kae_A CDC27, possible protein 26.2 3.1E+02 0.011 23.5 12.5 27 767-793 118-144 (242)
317 2w57_A Ferric uptake regulatio 26.2 2.2E+02 0.0074 23.7 7.5 58 719-777 8-66 (150)
318 2rfa_A Transient receptor pote 26.2 2.1E+02 0.0072 25.5 8.3 21 389-409 161-181 (232)
319 3t8k_A Uncharacterized protein 25.4 3.3E+02 0.011 23.5 10.2 14 294-307 94-107 (186)
320 3hra_A Ankyrin repeat family p 25.4 1.6E+02 0.0053 25.6 7.0 13 250-262 80-92 (201)
321 2ijq_A Hypothetical protein; s 24.9 2.2E+02 0.0075 24.1 7.0 57 700-756 39-103 (161)
322 2fe3_A Peroxide operon regulat 24.4 2.6E+02 0.0088 23.0 7.6 59 125-184 13-71 (145)
323 3l6a_A Eukaryotic translation 24.2 5.1E+02 0.018 25.5 10.9 60 172-235 15-79 (364)
324 2cos_A Serine/threonine protei 24.1 76 0.0026 20.9 3.1 36 749-789 11-48 (54)
325 4gq2_M Nucleoporin NUP120; bet 23.8 5.6E+02 0.019 29.3 12.7 131 140-288 816-950 (950)
326 4ets_A Ferric uptake regulatio 23.7 1.7E+02 0.0059 24.8 6.5 57 720-777 25-83 (162)
327 3bu8_A Telomeric repeat-bindin 23.4 2.1E+02 0.0073 25.5 6.7 20 702-721 123-142 (235)
328 2etb_A Transient receptor pote 23.4 1.4E+02 0.0049 27.3 6.7 16 424-439 228-243 (256)
329 3aji_A 26S proteasome non-ATPa 22.5 1.9E+02 0.0065 25.8 7.2 16 179-194 13-28 (231)
330 3bge_A Predicted ATPase; struc 22.4 3.6E+02 0.012 23.7 7.9 39 669-707 18-56 (201)
331 3ljn_A Hypothetical protein; a 22.3 2.7E+02 0.0093 27.2 8.8 215 243-474 21-266 (364)
332 2pnn_A Transient receptor pote 21.7 1.3E+02 0.0045 27.9 6.0 20 215-234 21-40 (273)
333 3aji_A 26S proteasome non-ATPa 21.3 2.4E+02 0.0083 25.0 7.7 14 250-263 14-27 (231)
334 3iqu_A 14-3-3 protein sigma; s 20.9 4.8E+02 0.016 23.8 10.3 60 557-616 11-71 (236)
335 2xig_A Ferric uptake regulatio 20.8 2.9E+02 0.0098 23.0 7.2 59 125-184 18-76 (150)
336 3t8k_A Uncharacterized protein 20.7 4E+02 0.014 22.8 10.9 29 281-309 42-70 (186)
337 2keb_A DNA polymerase subunit 20.6 2.8E+02 0.0097 21.0 6.4 31 712-742 28-58 (101)
338 1mzb_A Ferric uptake regulatio 20.6 2.5E+02 0.0085 22.8 6.7 57 126-183 10-67 (136)
339 2etb_A Transient receptor pote 20.5 1.8E+02 0.006 26.7 6.6 18 458-475 227-244 (256)
340 1ya0_A SMG-7 transcript varian 20.3 2.7E+02 0.0092 28.9 8.3 78 695-775 154-232 (497)
341 2ion_A PDCD4, programmed cell 20.1 2.3E+02 0.0079 23.7 6.4 22 209-230 14-35 (152)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.1e-41 Score=376.28 Aligned_cols=523 Identities=11% Similarity=0.036 Sum_probs=378.7
Q ss_pred HHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHH
Q 046719 214 FCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEA 293 (808)
Q Consensus 214 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 293 (808)
+...|....+...+..+. .++...|+.++..|.+.|++++|..+|+++.. ..|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHH
Confidence 456677777777776654 35888999999999999999999999999985 456778888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046719 294 KSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIEN 373 (808)
Q Consensus 294 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (808)
..+|+.+... .++..+++.++.+|.+.|++++|.++|+++.... . ....+.+.+. ...
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-----~~~~~~~~~~-----------~~~ 194 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR----K-----DEKNANKLLM-----------QDG 194 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-------------------C-----------CCS
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcc----c-----cccccccccc-----------ccc
Confidence 9999988543 5688889999999999999999999888532211 0 0001111111 112
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH--HHH-HHHHHHcCCCCCHH
Q 046719 374 GLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKA--EEW-VKRMLEKGVSPNVK 450 (808)
Q Consensus 374 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A--~~~-~~~~~~~~~~~~~~ 450 (808)
+..++..+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..+...+...+..+.+ ..+ +..+...+..+...
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 34456788889999999999999999999998876533 455565555544333222221 111 44444444444556
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHH
Q 046719 451 TNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSC 530 (808)
Q Consensus 451 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 530 (808)
+|+.++..|.+.|++++|.++|+++.+. +++..+++.++..|.+.|++++|..+|+++.+.+.. +..++..++.++.
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLH 350 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHH
Confidence 6777788888899999999999988765 578889999999999999999999999998876533 7778899999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 046719 531 TMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLE 610 (808)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 610 (808)
+.|++++|..+++++.+. .+.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|++
T Consensus 351 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998865 34578888889999999999999999999888742 3357788999999999999999999
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--
Q 046719 611 LYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQ-- 687 (808)
Q Consensus 611 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 687 (808)
+|+++.+.+ +.+..++..++.+|.+.| +++|.+.|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.
T Consensus 429 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 429 AYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp HHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 999888753 446677777777777777 778888887777653 446777778888888888888888888877764
Q ss_pred --CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 046719 688 --GIRPD--KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSF 763 (808)
Q Consensus 688 --g~~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 763 (808)
+..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..++.+|.+.|++++|.++++++++..|. +.
T Consensus 507 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~ 584 (597)
T 2xpi_A 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EI 584 (597)
T ss_dssp HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-Ch
Confidence 45666 4577778888888888888888887777642 236677777777888888888888888887777666 66
Q ss_pred HHHHHHHHHHH
Q 046719 764 CIYNELTNGLK 774 (808)
Q Consensus 764 ~~~~~l~~~l~ 774 (808)
..+..++.+|.
T Consensus 585 ~~~~~l~~~~~ 595 (597)
T 2xpi_A 585 MASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHHh
Confidence 77766666553
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.9e-40 Score=367.85 Aligned_cols=490 Identities=10% Similarity=-0.006 Sum_probs=256.8
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHH
Q 046719 111 SAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACE 190 (808)
Q Consensus 111 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 190 (808)
..|.+..+...+..+. .++...|+.++..|.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..
T Consensus 65 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3455555555554432 357788999999999999999999999999864 4577889999999999999999999
Q ss_pred HHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCh
Q 046719 191 IFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQR---------------KLVPTRVTYNTLVDGYCKVGEF 255 (808)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~g~~ 255 (808)
+|+++... .++..+++.++.+|.+.|++++|+++|+++... +..++..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99998653 568889999999999999999999999853222 1123455666666666666666
Q ss_pred hHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHH--H-HHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHH
Q 046719 256 EKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKS--V-CKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALY 332 (808)
Q Consensus 256 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 332 (808)
++|..+|++|.+.++. +...+..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 6666666666554321 33344444333322222111111 1 233333222223333444445555555555555555
Q ss_pred HHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 046719 333 EELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAP 412 (808)
Q Consensus 333 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 412 (808)
+++.+. +++..+++.++..|.+.|++++|.++|+++.+.++. +..+|+.++.+|.+.|++++|..+++++.+.. +.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 554443 234445555555555555555555555555444322 44445555555555555555555555554332 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 046719 413 NCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLIN 492 (808)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 492 (808)
+..+++.++..|.+.|++++|.++|+++.+... .+..+|+.++.+|.+.|++++|+++|+++...+ +.+..+|+.++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 444455555555555555555555555444321 134445555555555555555555555544431 234444444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHh
Q 046719 493 WLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR----EMGPT--LVTFNALINGLCK 566 (808)
Q Consensus 493 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~ 566 (808)
.|.+.|++++|..+|+++.+... .+..+|..++..+.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 44444444444444444444321 13444444444444444444444444444433 22333 3444444444444
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 046719 567 KGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKK 617 (808)
Q Consensus 567 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 617 (808)
.|++++|.+.++++.+.+ +.+..+|..++.+|.+.|++++|.+.|+++.+
T Consensus 529 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp TTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 444444444444444332 12344444444444444444444444444443
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1e-26 Score=245.99 Aligned_cols=379 Identities=13% Similarity=0.072 Sum_probs=235.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 046719 388 GYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDK 467 (808)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (808)
.+.+.|++++|...++++.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 344445555555555554443211 33344444444555555555555555544432 2244455555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046719 468 CFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVK 547 (808)
Q Consensus 468 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 547 (808)
|...|+++.... +.+..+|..+...+.+.|++++|...|+++.+.++. +...+..+...+...|++++|.+.|+++++
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555554431 223444555555555555555555555555543211 334455555556666666666666666655
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhH
Q 046719 548 REMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTY 627 (808)
Q Consensus 548 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 627 (808)
.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...|..+...+...|++++|+..|++..+.. +.+..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 42 2245566666666666666666666666666532 2234556666666666666666666666666531 2235555
Q ss_pred HHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046719 628 HPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLRE 706 (808)
Q Consensus 628 ~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~ 706 (808)
..+...+...| +++|.+.|+++++.+ +.+...|..++.++.+.|++++|++.|+++++. .+.+..+++.++..+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHc
Confidence 56666666666 666666666666643 334667888888888889999999999888875 344666888888889999
Q ss_pred CCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 707 GKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGK 778 (808)
Q Consensus 707 g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 778 (808)
|++++|...++++.+ ..| +..++..++.++.+.|++++|...++++++..|. +...+..++..+.+.|+
T Consensus 319 g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 319 GNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHHccC
Confidence 999999999988887 345 4677888888899999999999999998887665 77888888888777664
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=5.4e-26 Score=240.43 Aligned_cols=382 Identities=16% Similarity=0.102 Sum_probs=284.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 350 LLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGE 429 (808)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 429 (808)
+...+.+.|++++|.+.+..+.+..+. +...+..+...+.+.|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 344555667777777777776665433 44556666667777777777777777776653 3366677777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 046719 430 MDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKD 509 (808)
Q Consensus 430 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 509 (808)
+++|+..|+++.+... .+..+|..+...+.+.|++++|.+.|+++.... +.+...+..+...+...|++++|...|++
T Consensus 83 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 7777777777776532 245567777777777777777777777776642 33445566666777777888888888877
Q ss_pred HHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 046719 510 MENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDV 589 (808)
Q Consensus 510 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 589 (808)
+.+... .+..+|..+...+...|++++|+..|+++++.+ +.+...+..+...+...|++++|...+++..... +.+.
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 776532 256677888888888888888888888887753 3356777888888888888888888888877642 2246
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 590 ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCY 668 (808)
Q Consensus 590 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 668 (808)
.++..+...|...|++++|+..|+++.+.. +.+..++..+...+.+.| +++|.+.|+++++.. +.+..+++.++..+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 778888888888888888888888888742 334667778888888888 888888888888764 56788899999999
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCC
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKD 743 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 743 (808)
.+.|++++|++.++++.+. .+.+..++..++.++.+.|++++|...++++++ +.| +...|..++.++...|+
T Consensus 316 ~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999884 233566899999999999999999999999987 556 47778888888777664
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=8.1e-29 Score=265.20 Aligned_cols=205 Identities=16% Similarity=0.186 Sum_probs=155.8
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCC---------hH
Q 046719 117 EALQLYASTKADGTRLSLD-SINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGD---------LK 186 (808)
Q Consensus 117 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~ 186 (808)
.+..+...+.+.+...++. .++.+|++|++.|++++|+.+|++|.+.|+.||..+||.+|.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3344455555555544443 4778888888888888888888888888888888888888888887654 56
Q ss_pred HHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046719 187 RACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMK 266 (808)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 266 (808)
.|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 046719 267 RDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSK 321 (808)
Q Consensus 267 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 321 (808)
+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 8888888888888888888888888888888888888888888888887777764
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.3e-28 Score=263.60 Aligned_cols=203 Identities=16% Similarity=0.192 Sum_probs=120.3
Q ss_pred HHHHHHHHHcCCCcCH-hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCC---------HhHH
Q 046719 154 LDLFDEIVCMGFRPDK-FTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKK---------IRDA 223 (808)
Q Consensus 154 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A 223 (808)
..+.+++.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +++|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3344445444443332 24556666666666666666666666666666666666666666665443 4556
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 224 EKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAH 303 (808)
Q Consensus 224 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 303 (808)
.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHh
Q 046719 304 GFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCK 356 (808)
Q Consensus 304 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 356 (808)
|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..++.
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666555544
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.6e-24 Score=237.17 Aligned_cols=233 Identities=12% Similarity=-0.026 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 046719 556 TFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCI 635 (808)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 635 (808)
++..+...+...|++++|...++++.+.. |+...|..+...|...|++++|...++++.+.. +.+...+..+...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHH
Confidence 34444444555555555555555544432 224444444555555555555555555544421 223334444444444
Q ss_pred HcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 046719 636 REG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKE 714 (808)
Q Consensus 636 ~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~ 714 (808)
..| +++|.+.++++++.. +.+...+..++..+...|++++|+..++++.+. .+.+..++..++..+...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 444 555555555554432 223344455555555555555555555555542 11133345555555555555555555
Q ss_pred HHHHHHHCCCCCC-------HHHHHHHHHHHHc---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 046719 715 LVNDMKVKGLIPK-------ADTYNILVKGYCN---LKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQI 784 (808)
Q Consensus 715 ~~~~~~~~g~~p~-------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~ 784 (808)
.++++.+. .|+ ...+..++.++.. .|++++|...++++++..+. +...+..++.++.+.|++++|..
T Consensus 394 ~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 394 QYDLAIEL--ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHH--HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHh--hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHH
Confidence 55555432 111 2245555555555 55555555555555554433 44555555555555555555555
Q ss_pred HHHHHHHcCCCC
Q 046719 785 LCSEISIVGKDA 796 (808)
Q Consensus 785 ~~~~~~~~~~~~ 796 (808)
.++++++..|++
T Consensus 471 ~~~~a~~~~~~~ 482 (514)
T 2gw1_A 471 LFEESADLARTM 482 (514)
T ss_dssp HHHHHHHHCSSH
T ss_pred HHHHHHHhcccc
Confidence 555555555443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.8e-23 Score=230.35 Aligned_cols=276 Identities=11% Similarity=-0.055 Sum_probs=219.9
Q ss_pred HhhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----C--CC------CcchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046719 484 VVSYGSLINWLCK---DCKLLEAEIVLKDMEN-----R--GV------LPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVK 547 (808)
Q Consensus 484 ~~~~~~ll~~~~~---~~~~~~A~~~~~~m~~-----~--~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 547 (808)
...+......+.. .|++++|...|+++.+ . .. +.+..++..+...+...|++++|+..|+++.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444444444443 7888888888888776 2 11 22455778888888999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhH
Q 046719 548 REMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTY 627 (808)
Q Consensus 548 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 627 (808)
... +..++..+...+...|++++|...++++.+.. +.+...|..+...|...|++++|+..|+++.+.. +.+...+
T Consensus 266 ~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 341 (514)
T 2gw1_A 266 LFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPY 341 (514)
T ss_dssp HCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHH
T ss_pred hCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHH
Confidence 643 37788888889999999999999999988753 3356788888889999999999999999998753 3456677
Q ss_pred HHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-------HHHHHHH
Q 046719 628 HPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-------KMTYNSL 699 (808)
Q Consensus 628 ~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-------~~~~~~l 699 (808)
..+...+...| +++|.+.++++++.. +.+...+..++..+...|++++|...++++.+. .|+ ...+..+
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~l 418 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENKLDGIYVGIAPLVGK 418 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTSSSCSSCSHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hhccchHHHHHHHHHHH
Confidence 77888888888 999999999988753 445678888999999999999999999999873 232 2378899
Q ss_pred HHHHHh---cCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 046719 700 IFGHLR---EGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNEL 769 (808)
Q Consensus 700 ~~~~~~---~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 769 (808)
+..+.. .|++++|...++++.+. .| +..++..++.++.+.|++++|...++++++.++. +...+..+
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~ 489 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART-MEEKLQAI 489 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-HHHHHHHH
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc-cHHHHHHH
Confidence 999999 99999999999999884 45 5778899999999999999999999999998765 55555444
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.3e-22 Score=217.43 Aligned_cols=368 Identities=14% Similarity=0.066 Sum_probs=246.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046719 397 RAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEME 476 (808)
Q Consensus 397 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 476 (808)
.+...+....... +.+...+..+...+.+.|++++|+.+|+.+.+.. +.+..++..+...|...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444432 3366778888888888888888888888887753 2367788888888888888888888888887
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcch---hHHHHHHHH------------HHhcCCHHHHHHH
Q 046719 477 NSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNA---QIYNMLIDG------------SCTMGRIKDAFKF 541 (808)
Q Consensus 477 ~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~------------~~~~g~~~~A~~~ 541 (808)
+.+ +.+..++..+...|.+.|++++|...|+++.+.+.. +. ..+..++.. +...|++++|+..
T Consensus 88 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 88 QLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 753 446777888888888888888888888888775322 44 556665443 6667777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 046719 542 FDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIK 621 (808)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 621 (808)
|+++.+.. +.+..++..++..|.+.|++++|...|+++.+.. +.+..+|..++..|...|++++|+..|+++.+. .
T Consensus 166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 241 (450)
T 2y4t_A 166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--D 241 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 77776642 3356666777777777777777777777766542 234566777777777777777777777776653 3
Q ss_pred cCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-----HHHH
Q 046719 622 PSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-----KMTY 696 (808)
Q Consensus 622 p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-----~~~~ 696 (808)
|+.......+.... ....+..++..+.+.|++++|+..|+++++ +.|+ ...+
T Consensus 242 p~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~ 298 (450)
T 2y4t_A 242 QDHKRCFAHYKQVK---------------------KLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSK 298 (450)
T ss_dssp TTCHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHH
T ss_pred CChHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHH
Confidence 33222211110000 001123346777788888888888888877 3454 2367
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---
Q 046719 697 NSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNG--- 772 (808)
Q Consensus 697 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--- 772 (808)
..++.++.+.|++++|+..++++.+. .| +...|..++.+|...|++++|...++++++..|. +...+..++.+
T Consensus 299 ~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 299 ERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHH
Confidence 77888888888888888888887763 44 5777888888888888888888888888877665 67777777633
Q ss_pred ---------HHhcC-----ChhHHHHHHHH-HHHcCCCCCc
Q 046719 773 ---------LKQEG-----KLKEAQILCSE-ISIVGKDAWT 798 (808)
Q Consensus 773 ---------l~~~g-----~~~~A~~~~~~-~~~~~~~~~~ 798 (808)
|...| +.+++.+.+++ .++..|++++
T Consensus 376 ~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 376 LKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416 (450)
T ss_dssp HHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCC
T ss_pred hhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCC
Confidence 33344 66778888886 7777888776
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=1.7e-22 Score=223.95 Aligned_cols=234 Identities=13% Similarity=0.002 Sum_probs=115.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHH
Q 046719 557 FNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIR 636 (808)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 636 (808)
+..+...+...|++++|...++++.+. .|+...|..+...+...|++++|+..|+++.+.. +.+..++..+...+..
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence 333444444555555555555555543 2334445555555555555555555555555431 2234444445555555
Q ss_pred cC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 046719 637 EG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKEL 715 (808)
Q Consensus 637 ~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~ 715 (808)
.| +++|.+.++++++.. +.+...+..++.+|...|++++|+..++++.+. .+.+...+..++..+...|++++|...
T Consensus 323 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 55 555555555555432 223344555555555555555555555555553 122333555555555555555555555
Q ss_pred HHHHHHCCC-----CCCHHHHHHHHHHHHcc----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 046719 716 VNDMKVKGL-----IPKADTYNILVKGYCNL----------KDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLK 780 (808)
Q Consensus 716 ~~~~~~~g~-----~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 780 (808)
++++.+... ......+..++.++... |++++|...++++++..+. +...+..++.++.+.|+++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~ 479 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKID 479 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHH
Confidence 555543210 00112233334444444 5555555555555555443 4555555555555555555
Q ss_pred HHHHHHHHHHHcCCCC
Q 046719 781 EAQILCSEISIVGKDA 796 (808)
Q Consensus 781 ~A~~~~~~~~~~~~~~ 796 (808)
+|...++++++..|+.
T Consensus 480 ~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 480 EAIELFEDSAILARTM 495 (537)
T ss_dssp HHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHhCCCc
Confidence 5555555555555543
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.1e-21 Score=211.92 Aligned_cols=385 Identities=11% Similarity=0.064 Sum_probs=275.0
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046719 361 EIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRM 440 (808)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 440 (808)
..+...+.......+. +...+..++..|.+.|++++|+.+|+++.+... .+..++..+..++...|++++|...++++
T Consensus 9 ~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMA-DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --------------CH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555555554332 677899999999999999999999999998643 37889999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---hhHHHHHHH------------HHhcCCHHHHHH
Q 046719 441 LEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNV---VSYGSLINW------------LCKDCKLLEAEI 505 (808)
Q Consensus 441 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~------------~~~~~~~~~A~~ 505 (808)
.+.+.. +..++..+...|.+.|++++|...|+++.... +.+. ..+..++.. +...|++++|..
T Consensus 87 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 87 IQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 987533 68889999999999999999999999998753 3344 677776444 889999999999
Q ss_pred HHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 046719 506 VLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGL 585 (808)
Q Consensus 506 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 585 (808)
.|+++.+... .+..++..++.++...|++++|+..|+++.+.. +.+..++..++..|...|++++|...|+++...
T Consensus 165 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 240 (450)
T 2y4t_A 165 FLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-- 240 (450)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 9999988643 378889999999999999999999999998863 457899999999999999999999999999874
Q ss_pred CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCC-----H
Q 046719 586 NPD-VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPD-----L 658 (808)
Q Consensus 586 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~-----~ 658 (808)
.|+ ...+..+... . .......+...+...| +++|.+.|+++++.. |+ .
T Consensus 241 ~p~~~~~~~~~~~~--------------~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~ 295 (450)
T 2y4t_A 241 DQDHKRCFAHYKQV--------------K---------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTV 295 (450)
T ss_dssp CTTCHHHHHHHHHH--------------H---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHH
T ss_pred CCChHHHHHHHHHH--------------H---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHH
Confidence 344 3334333100 0 0011122344445555 555555555555532 22 3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVK 736 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~ 736 (808)
..+..++.++.+.|++++|+..++++.+. .| +..+|..++.+|...|++++|...++++++ +.|+ ...+..+..
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEK 371 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 46677777888888888888888887773 34 456778888888888888888888888877 4553 555555553
Q ss_pred H------------HHccC-----ChhHHHHHHHH-HHHCCCC--CCH-------HHHHHHHHHHHhcCChhHH
Q 046719 737 G------------YCNLK-----DFGGAYIWYRE-MFENGFI--PSF-------CIYNELTNGLKQEGKLKEA 782 (808)
Q Consensus 737 ~------------~~~~g-----~~~~A~~~~~~-~~~~~~~--~~~-------~~~~~l~~~l~~~g~~~~A 782 (808)
+ |...| +.+++.+.|++ +++..|+ |+. ..+..+..+|...|+.+++
T Consensus 372 ~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 372 AQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 2 33444 66788888887 5555433 121 2445555666655555443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=3.9e-21 Score=212.96 Aligned_cols=441 Identities=11% Similarity=0.035 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHH
Q 046719 134 LDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISG 213 (808)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 213 (808)
...+..++..+.+.|++++|+..|+++++..+. +..+|..+..++.+.|++++|+..|+++++.++ .+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 345666777777777777777777777766544 666777777777777777777777777766543 256666777777
Q ss_pred HHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--cCHHHHHHHHHHHHccCChh
Q 046719 214 FCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVE--VSLVMFNSLLGGFCKAKRME 291 (808)
Q Consensus 214 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~ 291 (808)
+...|++++|...|+ .... .|+ .....+..+...+....|...++.+....+. +........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 777777777777775 3222 122 1122233444555556666666666442110 00001122223333344444
Q ss_pred HHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhC--------CChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHH
Q 046719 292 EAKSVCKEMEAHGFDPDGF-TYSMLFDGYSKC--------GDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEI 362 (808)
Q Consensus 292 ~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 362 (808)
.+...+...... .+... ....+...+... |++++|..+|+++.+.... +...+..+
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~------------ 242 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENA------------ 242 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHH------------
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHH------------
Confidence 433333222111 11111 122222222111 2344444444444433211 10000000
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046719 363 AEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLE 442 (808)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 442 (808)
..++..+...+...|++++|...++++.+.. |+..++..+...+...|++++|...++++.+
T Consensus 243 ----------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 304 (537)
T 3fp2_A 243 ----------------ALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVD 304 (537)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 1123334444445555555555555555432 2344444555555555555555555555544
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHH
Q 046719 443 KGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIY 522 (808)
Q Consensus 443 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 522 (808)
.... +..++..+...+...|++++|...+++..... +.+...+..+...+...|++++|...|+++.+.. +.+...+
T Consensus 305 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 381 (537)
T 3fp2_A 305 LNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVP 381 (537)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHH
T ss_pred cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 3221 34445555555555555555555555554432 2234445555555555555555555555555442 2234455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCCC
Q 046719 523 NMLIDGSCTMGRIKDAFKFFDEMVKRE-----MGPTLVTFNALINGLCKK----------GRVMEAEDMLPQITSSGLNP 587 (808)
Q Consensus 523 ~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~ 587 (808)
..+...+...|++++|+..|+++++.. .......+..+...+... |++++|...|+++.+.. +.
T Consensus 382 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~ 460 (537)
T 3fp2_A 382 TFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PR 460 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CC
Confidence 555555555666666666655554421 111222233444445555 66666666666666532 22
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 046719 588 DVITYNSLISGYSSLGSSQKCLELYENMKKL 618 (808)
Q Consensus 588 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 618 (808)
+...|..+...|...|++++|.+.|++..+.
T Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4455666666666666666666666666653
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.90 E-value=1.1e-16 Score=180.55 Aligned_cols=597 Identities=11% Similarity=0.130 Sum_probs=394.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhc
Q 046719 103 NILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKI 182 (808)
Q Consensus 103 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (808)
+-|+...-+.+++.--+.+++.....|. .+..++|+|+..|...++-.+.+ +.. |.+-=..++.-||..
T Consensus 843 ~~lv~~~ekrnrLkll~p~LE~~~~~g~-~~~~~hnalakiyid~n~npe~f------L~~----n~~yd~~~vgkyce~ 911 (1630)
T 1xi4_A 843 DELVAEVEKRNRLKLLLPWLEARIHEGC-EEPATHNALAKIYIDSNNNPERF------LRE----NPYYDSRVVGKYCEK 911 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhccCCCHHHH------hhc----cCcccHHHHHHHHHh
Confidence 4566667777777777888888888874 58889999999999776543321 111 111112233344444
Q ss_pred CChHHHHHHHHH-----------------------hhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHh----CCC
Q 046719 183 GDLKRACEIFDG-----------------------MEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQ----RKL 235 (808)
Q Consensus 183 g~~~~A~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~ 235 (808)
.|+..|.-.|++ +++ +.|...|..++. ..+.. =.++.+.... ...
T Consensus 912 rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~---r~d~~lW~~vl~---~~n~~--RR~Lidqv~a~aL~e~~ 983 (1630)
T 1xi4_A 912 RDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVR---RKDPELWGSVLL---ESNPY--RRPLIDQVVQTALSETQ 983 (1630)
T ss_pred cCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHH---hcCHHHHHHHhc---CCcHH--HHHHHHHHHHhhccccc
Confidence 444444444432 011 113334444331 11111 1122222111 222
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHH
Q 046719 236 VPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKV--EVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYS 313 (808)
Q Consensus 236 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 313 (808)
.|+. -...+..|...|.+.+|.+++++....+- .-+...-+.++.+..+. +..+..++..+.... ...
T Consensus 984 ~Pee--Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~ 1053 (1630)
T 1xi4_A 984 DPEE--VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAP 1053 (1630)
T ss_pred CHHH--hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHH
Confidence 3443 45677888899999999999999984321 12345556677666665 556666666555422 234
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 046719 314 MLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTG 393 (808)
Q Consensus 314 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 393 (808)
.+...+...|.+++|..+|++... .....+.+ +-..|++++|.++.++.. +..+|..+..++.+.|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCC
Confidence 477888899999999999999631 12222223 227789999999988652 5778999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 046719 394 DLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILE 473 (808)
Q Consensus 394 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 473 (808)
++++|++.|.+. -|...|..++..+.+.|++++|.+.+....+.. ++....+.++.+|++.+++++.....
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 999999999764 378889999999999999999999999888764 33333445889999999988544332
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 046719 474 EMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPT 553 (808)
Q Consensus 474 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 553 (808)
. .++...|..+...|...|++++|..+|... ..|..+...+++.|++++|++.+++. .+
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n 1249 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NS 1249 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CC
Confidence 2 356677778999999999999999999885 37899999999999999999999877 26
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 046719 554 LVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSG 633 (808)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 633 (808)
..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++...... +-....|+-+...
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiL 1323 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHH
Confidence 7899999999999999999988776533 356667799999999999999999998887532 2334556667777
Q ss_pred HHHcC---HHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHccCCHHHHHHH-------------HHHHHHCCCCC
Q 046719 634 CIREG---IVAVEKLFNEMLQINLVP------DLLVYNALIHCYAEHGDVQKALVL-------------HSEMVDQGIRP 691 (808)
Q Consensus 634 ~~~~~---~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~g~~p 691 (808)
+++.. +.++.++|..-.. +++ +...|..++-.|.+.|+++.|... |+..+.+ ..
T Consensus 1324 yaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~ 1399 (1630)
T 1xi4_A 1324 YSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VA 1399 (1630)
T ss_pred HHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cc
Confidence 77766 5666666664433 333 457899999999999999999832 2332221 23
Q ss_pred CHHHHHHHHHHHHhcC---------------CHhHHHHHHHH-------------HHHCCCCCCHHHHHHHHHHHHccCC
Q 046719 692 DKMTYNSLIFGHLREG---------------KLSEVKELVND-------------MKVKGLIPKADTYNILVKGYCNLKD 743 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g---------------~~~~A~~~~~~-------------~~~~g~~p~~~~~~~l~~~~~~~g~ 743 (808)
|...|...+..|...+ +.+++.+++.+ ... ..+...-..+...+....|
T Consensus 1400 n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~---~n~~~Vneal~el~ieeed 1476 (1630)
T 1xi4_A 1400 NVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN---HNNKSVNESLNNLFITEED 1476 (1630)
T ss_pred cHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHH---hcchhhhHHHHHHhcCccc
Confidence 5556666666666555 56666666552 111 1122222345555555555
Q ss_pred hhHHHH------------HHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHH
Q 046719 744 FGGAYI------------WYREMFENGFIPSFCIYNELTNGLKQE-GKLKEAQILCSEI 789 (808)
Q Consensus 744 ~~~A~~------------~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~A~~~~~~~ 789 (808)
++.-.. +.+++.++ +..-+..++..+.+. |+|+.|.+++.+.
T Consensus 1477 ~~~Lr~si~~~~nfd~~~La~~lekh----eLl~frrIAa~ly~~n~~~~~ai~l~k~d 1531 (1630)
T 1xi4_A 1477 YQALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRIAAYLFKGNNRWKQSVELCKKD 1531 (1630)
T ss_pred hHHHHHHHhhccCcCHHHHHHHhhhh----hHHHHHHHHHHHHHhcCcHHHHHHHHHhc
Confidence 442222 22222111 222334555554444 9999998887654
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=4.3e-19 Score=185.15 Aligned_cols=318 Identities=10% Similarity=0.013 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHH
Q 046719 449 VKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDG 528 (808)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 528 (808)
...+..+...+...|++++|...|+++.... +.+..++..+...+...|++++|...|+++.+.... +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 4455666666667777777777777666542 345566666666666666666666666666654222 44556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHH
Q 046719 529 SCTMGRIKDAFKFFDEMVKREMG--PTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQ 606 (808)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 606 (808)
+...|++++|+..|+++.+.... .+...+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 66666666666666666654210 12333333310000 001112234555566666
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 046719 607 KCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMV 685 (808)
Q Consensus 607 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 685 (808)
+|+..++++.+.. +.+...+..+...+...| +++|.+.++++++.. +.+...+..++..+...|++++|...++++.
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666655432 233445555555555555 666666666665542 3445566666666666677777777776666
Q ss_pred HCCCCCC-HHHHH------------HHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHccCChhHH
Q 046719 686 DQGIRPD-KMTYN------------SLIFGHLREGKLSEVKELVNDMKVKGLIPK-A----DTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 686 ~~g~~pd-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~----~~~~~l~~~~~~~g~~~~A 747 (808)
+. .|+ ...+. .++..+...|++++|...++++.+. .|+ . ..+..++.++.+.|++++|
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 63 332 22222 2355667777777777777776663 343 2 2244566677777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 748 YIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+..++++++..+. +...+..++.++...|++++|...++++++..|++..
T Consensus 292 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 292 IRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 7777777776544 6667777777777777777777777777777666544
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=1.1e-15 Score=172.38 Aligned_cols=378 Identities=14% Similarity=0.147 Sum_probs=203.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 046719 137 INVLLECLVRCNQYDRALDLFDEIVCMGF--RPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGF 214 (808)
Q Consensus 137 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (808)
....+++|...|.+.+|+.+++++...+. .-+....+.++.+..+. +..+..++..+.... ...-+...+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHH
Confidence 34455556666666666666666553211 12334444455544444 334444444433211 122344555
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHH
Q 046719 215 CKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAK 294 (808)
Q Consensus 215 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 294 (808)
...|.+++|..+|++.. -.....+.++. ..|++++|.++.++. .+..+|..+..++...|++++|+
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 56666666666666642 12222223322 456666666666654 23456666666666666666666
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 046719 295 SVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENG 374 (808)
Q Consensus 295 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 374 (808)
..|.+. -|...|..++..+.+.|++++|.+.|....+.. +++...+.++.+|++.+++++..... +
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-- 1191 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-- 1191 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h--
Confidence 666432 245556666666666666666666666655543 22222334666666666666433322 1
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 046719 375 LVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNT 454 (808)
Q Consensus 375 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 454 (808)
.++...|..+...|...|++++|...|... ..|..+...+++.|++++|.+.+++.. +..+|..
T Consensus 1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWke 1255 (1630)
T 1xi4_A 1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKE 1255 (1630)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHH
Confidence 234445555666666666666666666663 256666666666666666666666552 4566666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHh--c
Q 046719 455 LIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCT--M 532 (808)
Q Consensus 455 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~ 532 (808)
+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++...... +-....|+-+...+++ -
T Consensus 1256 v~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCH
Confidence 66666666666666654433 22345555566666666666666666666655432 2233345555555444 2
Q ss_pred CCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCChHHHH
Q 046719 533 GRIKDAFKFFDEMVKREMGP------TLVTFNALINGLCKKGRVMEAE 574 (808)
Q Consensus 533 g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~ 574 (808)
++..++.++|..-.. +++ +...|..++-.|.+.|+++.|.
T Consensus 1330 eklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 344444444443221 111 3455666666666666666665
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=9.9e-19 Score=182.39 Aligned_cols=331 Identities=13% Similarity=0.057 Sum_probs=249.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 046719 413 NCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLIN 492 (808)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 492 (808)
+...+..+...+...|++++|...++++.+.... +..++..+...+...|++++|...++++.... +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 5667888999999999999999999999987433 68889999999999999999999999998763 457788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC--cchhHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 046719 493 WLCKDCKLLEAEIVLKDMENRGVL--PNAQIYNML------------IDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFN 558 (808)
Q Consensus 493 ~~~~~~~~~~A~~~~~~m~~~~~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 558 (808)
.+...|++++|...|+++.+.... .+...+..+ ...+...|++++|+..++++.+.. +.+..++.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999999886430 244455554 466667777777777777777653 33566677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHHc
Q 046719 559 ALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS-LRTYHPLLSGCIRE 637 (808)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 637 (808)
.+...+...|++++|...++++.+.. +.+...|..+...+...|++++|...|++..+. .|+ ...+..+
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~------- 228 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHY------- 228 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHH-------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHH-------
Confidence 77777777777777777777777643 335566777777777777777777777777653 222 2211111
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCCHhHH
Q 046719 638 GIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM-----TYNSLIFGHLREGKLSEV 712 (808)
Q Consensus 638 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-----~~~~l~~~~~~~g~~~~A 712 (808)
..+. .......++..+.+.|++++|+..++++.+. .|+.. .+..++.++...|++++|
T Consensus 229 ---------~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 229 ---------KQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp ---------HHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------HHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 0000 1112234467788999999999999999984 34432 355688999999999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046719 713 KELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQE 776 (808)
Q Consensus 713 ~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 776 (808)
...++++.+. .| +..++..++.++...|++++|...++++++..|. +...+..+..+....
T Consensus 292 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 292 IRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHH
Confidence 9999999884 45 6888999999999999999999999999988766 677777776665443
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=3.3e-17 Score=178.26 Aligned_cols=383 Identities=14% Similarity=0.065 Sum_probs=263.1
Q ss_pred CHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCH
Q 046719 378 DEVMFNTIVSGYCR----TGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCE----LGEMDKAEEWVKRMLEKGVSPNV 449 (808)
Q Consensus 378 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 449 (808)
+...+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .++.++|..+|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44455555555555 566666776666666553 45556666666666 666777777777666653 45
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCcchhH
Q 046719 450 KTNNTLIDGYGR----MGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCK----DCKLLEAEIVLKDMENRGVLPNAQI 521 (808)
Q Consensus 450 ~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~ 521 (808)
..+..|...|.. .+++++|+..|++..+.| +...+..+...|.. .++.++|...|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 555566666666 567777777777766654 45556666666665 567777777777776653 5566
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHH
Q 046719 522 YNMLIDGSCT----MGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCK----KGRVMEAEDMLPQITSSGLNPDVITYN 593 (808)
Q Consensus 522 ~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 593 (808)
+..+...|.. .+++++|+.+|++..+.+ +...+..+...|.. .+++++|..+|++..+.| +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6666666666 677777777777777654 45666666666665 677788888887777653 455666
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHc-----C-HHHHHHHHHHHHHCCCCCCHHHHHH
Q 046719 594 SLISGYSS----LGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIRE-----G-IVAVEKLFNEMLQINLVPDLLVYNA 663 (808)
Q Consensus 594 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~-~~~a~~~~~~~~~~~~~~~~~~~~~ 663 (808)
.+...|.. .+++++|+..|++..+.+ +...+..+...+... + .++|.+.|++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 66666666 777888888888877643 344555666666665 5 888888888888754 3456677
Q ss_pred HHHHHHccC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 664 LIHCYAEHG---DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLR----EGKLSEVKELVNDMKVKGLIPKADTYNILVK 736 (808)
Q Consensus 664 l~~~~~~~g---~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 736 (808)
+...|...| ++++|++.|++..+.| +...+..|+..|.. .+++++|..+++++.+.| ++..+..++.
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777666 7899999999998864 66778889988888 889999999999988854 5778888888
Q ss_pred HHHc----cCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 737 GYCN----LKDFGGAYIWYREMFENGFI-P-SFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 737 ~~~~----~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
.|.. .+++++|..+|+++.+.++. | +......++.++.. +.++|.+...+..++
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~ 467 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEK 467 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHH
Confidence 8887 89999999999999988754 2 45555566555443 334444444444444
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=9.2e-17 Score=174.77 Aligned_cols=364 Identities=14% Similarity=0.086 Sum_probs=309.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHH
Q 046719 399 MLAIQQMENHGLAPNCITFNTLIDKFCE----LGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGR----MGHFDKCFQ 470 (808)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~ 470 (808)
...++...+.| +...+..+...|.. .+++++|..++++..+.| +...+..|...|.. .+++++|..
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44455554543 67777788888887 899999999999998874 67788889999998 899999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHh----cCCHHHHHHHH
Q 046719 471 ILEEMENSGMKPNVVSYGSLINWLCK----DCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCT----MGRIKDAFKFF 542 (808)
Q Consensus 471 ~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~ 542 (808)
.|++..+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|++.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999998865 67778888888888 889999999999998875 56778888888887 78999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHH
Q 046719 543 DEMVKREMGPTLVTFNALINGLCK----KGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSS----LGSSQKCLELYEN 614 (808)
Q Consensus 543 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 614 (808)
++..+.+ +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|...|++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9999874 67888889999988 899999999999999864 66778888888876 8899999999999
Q ss_pred HHHCCCCcCHHhHHHHHHHHHH----cC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHH
Q 046719 615 MKKLGIKPSLRTYHPLLSGCIR----EG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEH-----GDVQKALVLHSEM 684 (808)
Q Consensus 615 ~~~~~~~p~~~~~~~l~~~~~~----~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~ 684 (808)
..+.+ +...+..+...+.. .+ .++|.+.|++..+.+ +...+..+...|... +++++|+..|++.
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 98754 45566666666666 56 999999999998764 455777788888877 8999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHC
Q 046719 685 VDQGIRPDKMTYNSLIFGHLREG---KLSEVKELVNDMKVKGLIPKADTYNILVKGYCN----LKDFGGAYIWYREMFEN 757 (808)
Q Consensus 685 ~~~g~~pd~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 757 (808)
.+.| +...+..|+..|...| ++++|++++++..+. .++..+..++..|.. .+++++|+.+|+++.+.
T Consensus 323 ~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 323 AEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 9965 5567888999998867 789999999999985 367889999999998 89999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC
Q 046719 758 GFIPSFCIYNELTNGLKQ----EGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 758 ~~~~~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~~~ 795 (808)
+ ++..+..|+.+|.. .++.++|..+++++.+.+++
T Consensus 397 ~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 397 G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 5 57889999999998 89999999999999998854
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.8e-18 Score=176.63 Aligned_cols=292 Identities=13% Similarity=0.040 Sum_probs=209.0
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 046719 481 KPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNAL 560 (808)
Q Consensus 481 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 560 (808)
+.+...+..+...+...|++++|..+|+++.+... .+...+..++..+...|++++|..+++++++.. +.+..++..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 44555666666666677777777777777666532 245556666667777777777777777777653 3356667777
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-
Q 046719 561 INGLCKKG-RVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG- 638 (808)
Q Consensus 561 ~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~- 638 (808)
...+...| ++++|...|+++.+.. +.+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 77777777 7777777777777643 2245667777777777777777777777777642 233455555666677777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHh
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQG--------IRPDKMTYNSLIFGHLREGKLS 710 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--------~~pd~~~~~~l~~~~~~~g~~~ 710 (808)
+++|.+.++++++.. +.+...+..++..+...|++++|...++++.+.. .+.+..++..++.++...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 777777777777653 4456788888888889999999999998888631 0223457888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCh
Q 046719 711 EVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGL-KQEGKL 779 (808)
Q Consensus 711 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~ 779 (808)
+|...++++.+.. +.+...+..++.++.+.|++++|..+++++++..+. +...+..++.++ ...|+.
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCch
Confidence 9999999988742 235778888899999999999999999999887766 788888888888 455553
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=7.8e-17 Score=177.29 Aligned_cols=431 Identities=10% Similarity=0.030 Sum_probs=274.0
Q ss_pred HHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 046719 332 YEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLA 411 (808)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 411 (808)
+++.++.. +-+...|..++. +.+.|+++.|..+|+++++..+. +...|..++..+.+.|++++|..+|+++....
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 34444432 335667777777 46778888888888888876433 66678888888888888888888888887753
Q ss_pred CCHHHHHHHHHHH-HhcCCHHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHH
Q 046719 412 PNCITFNTLIDKF-CELGEMDKAEE----WVKRMLEK-GVSP-NVKTNNTLIDGYGR---------MGHFDKCFQILEEM 475 (808)
Q Consensus 412 ~~~~~~~~li~~~-~~~g~~~~A~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~m 475 (808)
|+...|...+... ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 4666676666433 34566666554 66665543 4333 45566666665544 57777888888777
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHH------HHcC
Q 046719 476 ENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEM------VKRE 549 (808)
Q Consensus 476 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~ 549 (808)
...........|..........+. .+...++. ...++++.|..++... .+..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 662111111222222211100000 00001110 1234455565555542 2111
Q ss_pred ---CCCC--------HHHHHHHHHHHHhc----CCh----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-------CC
Q 046719 550 ---MGPT--------LVTFNALINGLCKK----GRV----MEAEDMLPQITSSGLNPDVITYNSLISGYSS-------LG 603 (808)
Q Consensus 550 ---~~~~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g 603 (808)
++|+ ...|...+...... ++. +.+..+|++.+... +.+...|..++..+.+ .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 2332 23444444333221 122 36667787777642 3356777777777664 67
Q ss_pred CHH-------HHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHccCC
Q 046719 604 SSQ-------KCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPD-L-LVYNALIHCYAEHGD 673 (808)
Q Consensus 604 ~~~-------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~ 673 (808)
+++ +|..+|++..+.-.+.+...+..++..+.+.| +++|.++|+++++. .|+ . ..|..++..+.+.|+
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcC
Confidence 776 78888888875222334667777777777788 88888888888874 343 2 478888888888899
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHH
Q 046719 674 VQKALVLHSEMVDQGIRPD-KMTYNSLIFG-HLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIW 750 (808)
Q Consensus 674 ~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 750 (808)
+++|.++|++.++. .|+ ...|...+.. +...|+.++|..+|+++++. .| +...|..++..+.+.|+.++|..+
T Consensus 372 ~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 372 IKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 99999999999874 343 3334333333 33588899999999998873 45 578888888888889999999999
Q ss_pred HHHHHHCCCC-C--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 046719 751 YREMFENGFI-P--SFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 751 ~~~~~~~~~~-~--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 796 (808)
|+++++.++. | ....|...+......|+.+.+.++.+++.+.-|++
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 9999887543 2 23477777888888899999999999888877643
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=4e-18 Score=175.49 Aligned_cols=278 Identities=11% Similarity=0.015 Sum_probs=239.0
Q ss_pred CCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 046719 515 VLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNS 594 (808)
Q Consensus 515 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 594 (808)
.+.+...+..++..+...|++++|+.+|+++++.. +.+...+..++..+...|++++|...++++.+.. +.+...|..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 34467778889999999999999999999999864 3356677778888999999999999999999853 336788999
Q ss_pred HHHHHHcCC-CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 046719 595 LISGYSSLG-SSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHG 672 (808)
Q Consensus 595 l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 672 (808)
+...+...| ++++|...|+++.+.. +.+...+..+...+...| +++|.+.++++++.. +.+...+..++..|...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 999999999 9999999999999753 345777888889999999 999999999999864 334566777999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHccCCh
Q 046719 673 DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKG--------LIPKADTYNILVKGYCNLKDF 744 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--------~~p~~~~~~~l~~~~~~~g~~ 744 (808)
++++|.+.++++.+. .+.+...+..++..+...|++++|...++++.+.. ......++..++.++...|++
T Consensus 174 ~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999999985 23356689999999999999999999999987631 123467899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 745 GGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 745 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
++|...++++++..+. +...+..++.++...|++++|...++++++..|++..
T Consensus 253 ~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 305 (330)
T 3hym_B 253 AEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305 (330)
T ss_dssp HHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH
T ss_pred HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH
Confidence 9999999999998776 7899999999999999999999999999999888765
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=1.6e-16 Score=174.85 Aligned_cols=428 Identities=12% Similarity=0.087 Sum_probs=248.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHH
Q 046719 131 RLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVL 210 (808)
Q Consensus 131 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 210 (808)
|.+..+|..++. +.+.|+++.|+.+|+++++..+. +...|...+..+.+.|++++|..+|+++++.. |+...|...
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 446777888887 46778888888888888776444 67778888888888888888888888887753 566666666
Q ss_pred HHHH-HccCCHhHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCcCH
Q 046719 211 ISGF-CKEKKIRDAEK----LFDEMCQ-RKLVP-TRVTYNTLVDGYCK---------VGEFEKVSALRERMKRDKVEVSL 274 (808)
Q Consensus 211 ~~~~-~~~g~~~~A~~----~~~~m~~-~~~~p-~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~ 274 (808)
+... ...|++++|.+ +|++... .|..| +...|...+....+ .|+++.|..+|++..+.......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 6433 34566666654 6665543 24332 45566666665544 56666666666666552111111
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHH
Q 046719 275 VMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNAL 354 (808)
Q Consensus 275 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 354 (808)
..|..........|. .+...++. ...+++..|..+++++...
T Consensus 166 ~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~---------------- 207 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETV---------------- 207 (530)
T ss_dssp HHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHH----------------
Confidence 222211110000000 00000000 0122334444444331100
Q ss_pred HhcCChHHHHHHHHHHHHCC---CCCC--------HhhHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHH
Q 046719 355 CKEGKVEIAEEIVGKEIENG---LVPD--------EVMFNTIVSGYCRT----GDL----NRAMLAIQQMENHGLAPNCI 415 (808)
Q Consensus 355 ~~~g~~~~a~~~~~~~~~~~---~~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~ 415 (808)
....+.. +.|+ ...|...+...... ++. ..+..+|++..... +-+..
T Consensus 208 -------------~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~ 273 (530)
T 2ooe_A 208 -------------MKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPD 273 (530)
T ss_dssp -------------HHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHH
T ss_pred -------------HHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHH
Confidence 0000100 1111 12333333222211 121 35566666666542 22566
Q ss_pred HHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 046719 416 TFNTLIDKFCE-------LGEMD-------KAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMK 481 (808)
Q Consensus 416 ~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 481 (808)
.|..++..+.+ .|+++ +|+.++++.++.-.+.+...|..++..+.+.|++++|..+|+++... .
T Consensus 274 ~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~ 351 (530)
T 2ooe_A 274 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--E 351 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--S
T ss_pred HHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--c
Confidence 66666666654 56665 77777777765212234667777777777777777777777777764 3
Q ss_pred CC-H-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 046719 482 PN-V-VSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDG-SCTMGRIKDAFKFFDEMVKREMGPTLVTFN 558 (808)
Q Consensus 482 ~~-~-~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 558 (808)
|+ . ..|..++..+.+.|++++|..+|++..+.. +.+...|...+.. +...|++++|..+|+..++.. +.+...|.
T Consensus 352 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~ 429 (530)
T 2ooe_A 352 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVL 429 (530)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHH
Confidence 43 2 467777777777777788888887777652 1123333322222 235788888888888887752 34677788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC-CCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 046719 559 ALINGLCKKGRVMEAEDMLPQITSSGL-NPD--VITYNSLISGYSSLGSSQKCLELYENMKKL 618 (808)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 618 (808)
.++..+.+.|+.++|..+|++.+..+. .|+ ...|...+......|+.+.+..+++++.+.
T Consensus 430 ~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 430 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888888888877532 222 346777777777788888888888887764
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=5.6e-18 Score=177.43 Aligned_cols=264 Identities=14% Similarity=0.091 Sum_probs=184.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046719 521 IYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYS 600 (808)
Q Consensus 521 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 600 (808)
.+..+...+...|++++|+..|+++++.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...|.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34455555555555555555555555442 2244455555555555555555555555555432 224445555555555
Q ss_pred cCCCHHHHHHHHHHHHHCCCCcCHHhHHH---------------HHHHHHHcC-HHHHHHHHHHHHHCCCCC-CHHHHHH
Q 046719 601 SLGSSQKCLELYENMKKLGIKPSLRTYHP---------------LLSGCIREG-IVAVEKLFNEMLQINLVP-DLLVYNA 663 (808)
Q Consensus 601 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~---------------l~~~~~~~~-~~~a~~~~~~~~~~~~~~-~~~~~~~ 663 (808)
..|++++|+..++++.+.. +.+...+.. .+..+...| +++|.+.++++++..... +..++..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 5555555555555555432 111111110 223333667 999999999998864221 5788999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc
Q 046719 664 LIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNL 741 (808)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 741 (808)
++..|...|++++|+..++++++. .| +..++..++..+...|++++|+..++++++. .| +...+..++.++.+.
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHC
Confidence 999999999999999999999984 44 5668999999999999999999999999884 45 578899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046719 742 KDFGGAYIWYREMFENGFIP----------SFCIYNELTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 742 g~~~~A~~~~~~~~~~~~~~----------~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
|++++|...++++++..+.. ....|..++.++...|++++|..++++.+.
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 99999999999999875542 178999999999999999999998875543
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=4.6e-16 Score=168.90 Aligned_cols=388 Identities=9% Similarity=-0.081 Sum_probs=237.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C
Q 046719 378 DEVMFNTIVSGYCRTGDLNRAMLAIQQMENH--------GLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEK-----G 444 (808)
Q Consensus 378 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~ 444 (808)
....||.+...+...|+.++|++.|++..+. ..+....+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456888888888899999999988887542 11224567888888888888888888888876542 1
Q ss_pred -CC-CCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCCCHhhHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCc
Q 046719 445 -VS-PNVKTNNTLIDGYGRM--GHFDKCFQILEEMENSGMKPNVVSYGSLINW---LCKDCKLLEAEIVLKDMENRGVLP 517 (808)
Q Consensus 445 -~~-~~~~~~~~l~~~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~---~~~~~~~~~A~~~~~~m~~~~~~~ 517 (808)
.. ....++..+..++.+. +++++|+..|++..+.. +.+...+..+... +...++.++|+..+++..+.+..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 01 1244555555555443 46788888888877642 3344455444443 33456677777777777665322
Q ss_pred chhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 046719 518 NAQIYNMLIDGSCT----MGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYN 593 (808)
Q Consensus 518 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 593 (808)
+..++..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 44555555444433 456677788887777653 3356677777778888888888888888777642 22445566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 046719 594 SLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHG 672 (808)
Q Consensus 594 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 672 (808)
.+...|...+... .... ...........+ .+.|...+++..+.+ +.+...+..+...|...|
T Consensus 286 ~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 5655553211110 0000 000000111122 667888888888754 445567888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHH
Q 046719 673 DVQKALVLHSEMVDQGIRPDKM--TYNSLIF-GHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYI 749 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 749 (808)
++++|++.|+++++....|... .+..++. .+...|++++|+..++++++ +.|+...... ..+.+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHHHH
Confidence 9999999999999853332221 2334443 34578999999999999998 6676543322 2344566
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 750 WYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
++++.++.+|. ++.++..|+.+|...|++++|+..++++++.++.+++
T Consensus 418 ~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 418 IAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HHHHHHHHCC--CTTHHHHHHHHHHHHHHCC------------------
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 77888887776 8899999999999999999999999999998877654
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=2.5e-17 Score=172.42 Aligned_cols=287 Identities=10% Similarity=-0.008 Sum_probs=209.5
Q ss_pred hcCChHHHHH-HHHHHHHCCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHH
Q 046719 461 RMGHFDKCFQ-ILEEMENSGM---KPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIK 536 (808)
Q Consensus 461 ~~g~~~~a~~-~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 536 (808)
-.|++++|.. .+++...... ..+...+..+...+.+.|++++|...|+++.+... .+..++..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHH
Confidence 3466777776 6665443210 11245566777777777888888888877777633 35667777777888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHc
Q 046719 537 DAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNS---------------LISGYSS 601 (808)
Q Consensus 537 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~ 601 (808)
+|+..|+++++.. +.+..++..+...+...|++++|...++++...... +...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 8888888777753 336777777778888888888888888887765321 2222211 1333348
Q ss_pred CCCHHHHHHHHHHHHHCCCC-cCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 046719 602 LGSSQKCLELYENMKKLGIK-PSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALV 679 (808)
Q Consensus 602 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 679 (808)
.|++++|...|+++.+.... ++..++..+...+...| +++|.+.++++++.. +.+...+..++..+...|++++|+.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999999999875311 14778888888899999 999999999998864 4567889999999999999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-C-----------HHHHHHHHHHHHccCChhH
Q 046719 680 LHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-K-----------ADTYNILVKGYCNLKDFGG 746 (808)
Q Consensus 680 ~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~-----------~~~~~~l~~~~~~~g~~~~ 746 (808)
.|+++++. .| +...+..++.++...|++++|...++++.+. .| + ..+|..++.++...|++++
T Consensus 273 ~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 273 AYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 99999984 44 5668999999999999999999999998763 23 2 6789999999999999999
Q ss_pred HHHHHHHHH
Q 046719 747 AYIWYREMF 755 (808)
Q Consensus 747 A~~~~~~~~ 755 (808)
|..++++.+
T Consensus 349 A~~~~~~~l 357 (368)
T 1fch_A 349 YGAADARDL 357 (368)
T ss_dssp HHHHHTTCH
T ss_pred HHHhHHHHH
Confidence 999887654
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=4.4e-17 Score=170.31 Aligned_cols=264 Identities=13% Similarity=0.010 Sum_probs=189.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046719 519 AQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISG 598 (808)
Q Consensus 519 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 598 (808)
...+..+...+.+.|++++|+..|+++++.. +.+..++..+...|...|++++|+..|+++.+.. +.+..+|..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3345666666666666666666666666542 3356666666666666777777777776666542 2245666666777
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCcCH-----------HhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 046719 599 YSSLGSSQKCLELYENMKKLGIKPSL-----------RTYHPLLSGCIREG-IVAVEKLFNEMLQINLV-PDLLVYNALI 665 (808)
Q Consensus 599 ~~~~g~~~~A~~~~~~~~~~~~~p~~-----------~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 665 (808)
|...|++++|+..|+++.+. .|+. ..+..+...+...| +++|.+.++++++.... .+...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 77777777777777776653 2221 12223355666777 88888888888876422 1678899999
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCh
Q 046719 666 HCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDF 744 (808)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~ 744 (808)
..|...|++++|++.|+++++. .+.+..+|..++.++...|++++|+..++++++ ..| +..++..++.+|.+.|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999999984 233566899999999999999999999999988 445 478899999999999999
Q ss_pred hHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 046719 745 GGAYIWYREMFENGFIP-----------SFCIYNELTNGLKQEGKLKEAQILCSEI 789 (808)
Q Consensus 745 ~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 789 (808)
++|...++++++..+.. +...|..++.++...|+.+.|.+..++.
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 99999999999864331 3578899999999999999888776653
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.9e-17 Score=167.97 Aligned_cols=375 Identities=11% Similarity=0.106 Sum_probs=174.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046719 356 KEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEE 435 (808)
Q Consensus 356 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 435 (808)
+.|++++|.+.++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5677888888887772 2347888888888888888888888653 466788888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046719 436 WVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGV 515 (808)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~ 515 (808)
.++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 77766653 3456777888888888888888877774 366678888888888888888888888866
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 046719 516 LPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSL 595 (808)
Q Consensus 516 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 595 (808)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 36888888888888888888888887 267888888888888888888855544322 233334468
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC---HHHHHHHHHHHHHCCCCC------CHHHHHHHHH
Q 046719 596 ISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG---IVAVEKLFNEMLQINLVP------DLLVYNALIH 666 (808)
Q Consensus 596 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~a~~~~~~~~~~~~~~------~~~~~~~l~~ 666 (808)
+..|.+.|++++|+.+++...... +-....|+-+.-.+++-. +.+..++|..- .+++| +...|..++-
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHH
Confidence 888888889999988888887543 334566777766777766 44555555422 12233 3467888899
Q ss_pred HHHccCCHHHHHHHHHHHHHCC--------------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 046719 667 CYAEHGDVQKALVLHSEMVDQG--------------IRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYN 732 (808)
Q Consensus 667 ~~~~~g~~~~A~~~~~~~~~~g--------------~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 732 (808)
.|...++++.|..+ |.+.. -..+...|...+..|... ...++.-+...+...+.+ .
T Consensus 291 ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p~~l~~ll~~l~~~ld~-----~ 360 (449)
T 1b89_A 291 LYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRLDH-----T 360 (449)
T ss_dssp HHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGGCCH-----H
T ss_pred HHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhccCc-----H
Confidence 99999999988864 44420 012344455555555522 223333333332211222 3
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 046719 733 ILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCS 787 (808)
Q Consensus 733 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~ 787 (808)
..+..+.+.|+..-...+++.+... .+..+-..|-..|....+++.=+..++
T Consensus 361 r~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 361 RAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp HHHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4456667888888888888777744 255666677788888888776554444
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=1e-16 Score=160.12 Aligned_cols=257 Identities=11% Similarity=-0.036 Sum_probs=117.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 046719 494 LCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEA 573 (808)
Q Consensus 494 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 573 (808)
....|++.+|+..++........+.......+.++|...|+++.|+..++. ..+|+..++..+...+...|+.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 334455555555554433221111112333444555555555555543322 1233444444555555555555555
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHC
Q 046719 574 EDMLPQITSSGLNP-DVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQI 652 (808)
Q Consensus 574 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ 652 (808)
++.++++...+..| +...+..+...+...|++++|++.+++
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------------------------------------- 126 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------------------------------------- 126 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------------------------------------
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------------------------------------
Confidence 55555554443223 233344444455555555555555543
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHH
Q 046719 653 NLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTY---NSLIFGHLREGKLSEVKELVNDMKVKGLIPKAD 729 (808)
Q Consensus 653 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 729 (808)
+.+...+..++.+|.+.|++++|.+.++++.+. .|+.... ..++..+...|++++|..+|+++.+. .+.+..
T Consensus 127 --~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~ 201 (291)
T 3mkr_A 127 --GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLL 201 (291)
T ss_dssp --CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHH
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHH
Confidence 233344444455555555555555555555442 2332211 11112222334555555555555443 122344
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHHcCCCCCc
Q 046719 730 TYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKE-AQILCSEISIVGKDAWT 798 (808)
Q Consensus 730 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~-A~~~~~~~~~~~~~~~~ 798 (808)
.+..++.++.+.|++++|...++++++..|. ++.++..++..+...|+..+ +..+++++++..|++..
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 4555555555555555555555555554444 44555555555555555543 34455555555555443
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=5e-17 Score=166.96 Aligned_cols=268 Identities=10% Similarity=-0.048 Sum_probs=187.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046719 521 IYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYS 600 (808)
Q Consensus 521 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 600 (808)
.+..+...+...|++++|+.+|+++++.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34444555555555555555555555442 2244555555555555555555555555555432 223445555555555
Q ss_pred cCCCHHHHHHHHHHHHHCCCCcC-HHhHHHH--------------HH-HHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHH
Q 046719 601 SLGSSQKCLELYENMKKLGIKPS-LRTYHPL--------------LS-GCIREG-IVAVEKLFNEMLQINLVPDLLVYNA 663 (808)
Q Consensus 601 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l--------------~~-~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 663 (808)
..|++++|...++++.+.. |+ ...+..+ .. .+...| +++|.+.++++++.. +.+...+..
T Consensus 101 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 6666666666666555431 22 1122111 11 245556 888999999988864 456788999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 046719 664 LIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKD 743 (808)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 743 (808)
++..|...|++++|++.++++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...+..++.++...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999852 3356689999999999999999999999998842 2357889999999999999
Q ss_pred hhHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 744 FGGAYIWYREMFENGFIP-----------SFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 744 ~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
+++|...++++++..+.. +...+..++.++.+.|++++|...+++.++.-++
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 999999999999876553 5788899999999999999999999876654433
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1e-16 Score=162.56 Aligned_cols=182 Identities=13% Similarity=0.124 Sum_probs=34.4
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHH
Q 046719 111 SAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACE 190 (808)
Q Consensus 111 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 190 (808)
..|+.++|.++++++ +...+|..|+.++.+.|++++|...|.+. +|..+|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 444555555555444 12234555555555555555555555432 244455555555555555555555
Q ss_pred HHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 046719 191 IFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKV 270 (808)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 270 (808)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 44444432 2234445555555555555555554442 134445555555555555555555555543
Q ss_pred CcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHH
Q 046719 271 EVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGV 328 (808)
Q Consensus 271 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 328 (808)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA 196 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHH
Confidence 23445555555555555555555444 1344444444444444444444
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=2.4e-15 Score=163.30 Aligned_cols=388 Identities=12% Similarity=-0.004 Sum_probs=253.8
Q ss_pred CCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHC-----C--CCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--
Q 046719 340 FRINSYTCSILLNALCKEGKVEIAEEIVGKEIEN-----G--LVP-DEVMFNTIVSGYCRTGDLNRAMLAIQQMENHG-- 409 (808)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-- 409 (808)
.......|+.|...+...|+.++|++.|++.++. + ..| ...+|+.+...|...|++++|...+++..+..
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3344567899999999999999999999987652 1 122 45689999999999999999999999886521
Q ss_pred ----C-CCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHCC
Q 046719 410 ----L-APNCITFNTLIDKFCE--LGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDG---YGRMGHFDKCFQILEEMENSG 479 (808)
Q Consensus 410 ----~-~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~ 479 (808)
. .....++..+..++.. .+++++|+..|++..+..+. +...+..+... +...++.++|++.+++..+..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1 1134556666555554 45799999999999987433 45555555544 445678889999999887753
Q ss_pred CCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 046719 480 MKPNVVSYGSLINWLCK----DCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLV 555 (808)
Q Consensus 480 ~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 555 (808)
+.+..++..+...+.. .+++++|...+++...... .+..++..+...+...|++++|+..++++++.. +.+..
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 4456666666655544 4678899999999887643 367789999999999999999999999999863 44677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 046719 556 TFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCI 635 (808)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 635 (808)
++..+...|...+.... ... ...........+..++|...+++..+.. +.+..++..+...+.
T Consensus 283 ~~~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHH
Confidence 77777776643221111 000 0000111112234567888888877642 344566777778888
Q ss_pred HcC-HHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 046719 636 REG-IVAVEKLFNEMLQINLVPDL--LVYNALIH-CYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSE 711 (808)
Q Consensus 636 ~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~ 711 (808)
..| +++|.+.|++.++....+.. ..+..+.. .+...|++++|+..|++.++ +.|+....... ...
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~~~ 414 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------KDK 414 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------HHH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------HHH
Confidence 888 88898888888876433322 12333333 24577999999999999998 56765433222 234
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 712 VKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 712 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+..++++.++.. +.+..+|..++.++...|++++|++.|+++++.++.
T Consensus 415 l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 415 LQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 455666666532 336788999999999999999999999999997765
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=7e-16 Score=154.11 Aligned_cols=257 Identities=13% Similarity=0.065 Sum_probs=180.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcC
Q 046719 456 IDGYGRMGHFDKCFQILEEMENSGMKPNV--VSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMG 533 (808)
Q Consensus 456 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 533 (808)
+.-....|++..|+..++..... .|+. .....+..+|...|++++|...++. ..+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34456789999999998876543 3433 4556678899999999999986654 24567888999999999999
Q ss_pred CHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 046719 534 RIKDAFKFFDEMVKREM-GPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELY 612 (808)
Q Consensus 534 ~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 612 (808)
+.++|++.+++++..+. +.+...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999998764 44577788888999999999999999987 457789999999999999999999999
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 046719 613 ENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD 692 (808)
Q Consensus 613 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd 692 (808)
+++.+. .|+.... .+. ..++..+...|++++|+.+|+++.+. .+.+
T Consensus 154 ~~~~~~--~p~~~~~-~l~------------------------------~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~ 199 (291)
T 3mkr_A 154 KKMQDQ--DEDATLT-QLA------------------------------TAWVSLAAGGEKLQDAYYIFQEMADK-CSPT 199 (291)
T ss_dssp HHHHHH--CTTCHHH-HHH------------------------------HHHHHHHHCTTHHHHHHHHHHHHHHH-SCCC
T ss_pred HHHHhh--CcCcHHH-HHH------------------------------HHHHHHHhCchHHHHHHHHHHHHHHh-CCCc
Confidence 999875 2442211 111 11222233445666666666666654 2334
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhH-HHHHHHHHHHCCCC
Q 046719 693 KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGG-AYIWYREMFENGFI 760 (808)
Q Consensus 693 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~ 760 (808)
...++.++.++.+.|++++|...++++++ ..| ++.++..++.++...|+.++ +.++++++++..|.
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~--~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQEALD--KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 44566666666666666666666666655 233 45556666666666666654 34566666655544
No 33
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=2.3e-16 Score=164.82 Aligned_cols=260 Identities=11% Similarity=-0.022 Sum_probs=181.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 046719 485 VSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGL 564 (808)
Q Consensus 485 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 564 (808)
..+..+...+.+.|++++|...|+++.+... .+..++..+...+...|++++|+..|+++++.. +.+..++..+...|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3355555555566666666666666555432 245566666666666666666666666666542 23456666666666
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-cCHHhHHHHHH
Q 046719 565 CKKGRVMEAEDMLPQITSSGLNPD-----------VITYNSLISGYSSLGSSQKCLELYENMKKLGIK-PSLRTYHPLLS 632 (808)
Q Consensus 565 ~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~ 632 (808)
...|++++|...++++.+.. |+ ...+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 66666666666666665531 21 223344577788888888888888888875311 15777888888
Q ss_pred HHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHh
Q 046719 633 GCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLS 710 (808)
Q Consensus 633 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~ 710 (808)
.+...| +++|.+.|+++++.. +.+..+|+.++.+|...|++++|+..|+++++. .| +..++..++.+|...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHH
Confidence 888888 889999998888764 556789999999999999999999999999984 45 4668999999999999999
Q ss_pred HHHHHHHHHHHCCCCC-------------CHHHHHHHHHHHHccCChhHHHHHHHH
Q 046719 711 EVKELVNDMKVKGLIP-------------KADTYNILVKGYCNLKDFGGAYIWYRE 753 (808)
Q Consensus 711 ~A~~~~~~~~~~g~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 753 (808)
+|...++++++. .| +...|..+..++...|+.+.|....++
T Consensus 299 ~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999998763 22 257899999999999999998887665
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=5.3e-18 Score=185.34 Aligned_cols=118 Identities=11% Similarity=0.143 Sum_probs=69.7
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHhhh---CCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 046719 168 DKFTYGKAVQAAVKIGDLKRACEIFDGMEK---SRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNT 244 (808)
Q Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 244 (808)
-..+||++|.+|++.|++++|.++|++|.+ .|+.||+.+||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 344566666666666666666666655432 34556666666666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 046719 245 LVDGYCKVGEF-EKVSALRERMKRDKVEVSLVMFNSLLGGFC 285 (808)
Q Consensus 245 li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 285 (808)
||.++|+.|+. ++|.++|++|.+.|+.||..+|++++.+..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 66666666553 455566666666666666666665554443
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=7.5e-16 Score=158.14 Aligned_cols=263 Identities=9% Similarity=-0.053 Sum_probs=183.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 046719 486 SYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLC 565 (808)
Q Consensus 486 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 565 (808)
.+..+...+...|++++|..+|+++.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 344445555555556666655555555422 244555556666666666666666666665542 234555666666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 046719 566 KKGRVMEAEDMLPQITSSGLNPDVITYNSL--------------IS-GYSSLGSSQKCLELYENMKKLGIKPSLRTYHPL 630 (808)
Q Consensus 566 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 630 (808)
..|++++|...++++.+... .+...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 66666666666666665321 111222222 22 3667788888888888888753 3456777778
Q ss_pred HHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 046719 631 LSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKL 709 (808)
Q Consensus 631 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~ 709 (808)
...+...| +++|.+.++++++.. +.+...+..++..+...|++++|++.++++.+.. +.+..++..++.++...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 88888888 888888888888764 4567888999999999999999999999998842 33566899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 710 SEVKELVNDMKVKGLIPK-------------ADTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
++|...++++.+. .|+ ...|..++.++.+.|++++|..+++++++
T Consensus 257 ~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 257 DLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999873 344 67888999999999999999999887654
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=181.34 Aligned_cols=120 Identities=12% Similarity=0.123 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHH
Q 046719 133 SLDSINVLLECLVRCNQYDRALDLFDEIV---CMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNV 209 (808)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 209 (808)
...+||+||++|++.|+.++|..+|+.|. ..|+.||+.+||++|.+|++.|++++|.++|++|.+.|+.||++|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999998875 458899999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCH-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 046719 210 LISGFCKEKKI-RDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKV 252 (808)
Q Consensus 210 l~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 252 (808)
+|+++|+.|+. ++|.++|++|.+.|+.||.++|+.++.++.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 99999999984 78899999999999999999999998766554
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=2.9e-15 Score=142.80 Aligned_cols=199 Identities=15% Similarity=0.062 Sum_probs=131.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 046719 552 PTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLL 631 (808)
Q Consensus 552 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 631 (808)
++...+..+...+.+.|++++|...|++.++.. +.+...|..+...+.+.|++++|+..|++..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-------------- 67 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVA-------------- 67 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------
Confidence 344455555555555555555555555555432 22344555555555555555555555555554
Q ss_pred HHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 046719 632 SGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEH-----------GDVQKALVLHSEMVDQGIRPD-KMTYNSL 699 (808)
Q Consensus 632 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~g~~pd-~~~~~~l 699 (808)
.+ +.+...+..+..++... |++++|+..+++.++ +.|+ ...+..+
T Consensus 68 --------------------~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~l 124 (217)
T 2pl2_A 68 --------------------RT-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQR 124 (217)
T ss_dssp --------------------HC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred --------------------hC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 32 23344555555555555 999999999999998 4564 5588899
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 046719 700 IFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKL 779 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 779 (808)
+.++...|++++|+..++++++.. .++..+..++.++...|++++|+..|+++++..|. +...+..++.++...|++
T Consensus 125 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 125 GLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKA 201 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC----
T ss_pred HHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCH
Confidence 999999999999999999998865 77888999999999999999999999999998777 888999999999999999
Q ss_pred hHHHHHHHHHHH
Q 046719 780 KEAQILCSEISI 791 (808)
Q Consensus 780 ~~A~~~~~~~~~ 791 (808)
++|...++++-.
T Consensus 202 ~~A~~~~~~~~~ 213 (217)
T 2pl2_A 202 EEAARAAALEHH 213 (217)
T ss_dssp ------------
T ss_pred HHHHHHHHHHhh
Confidence 999999887643
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=8.2e-15 Score=144.49 Aligned_cols=226 Identities=12% Similarity=0.079 Sum_probs=133.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCC----HHHH
Q 046719 519 AQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGL--NPD----VITY 592 (808)
Q Consensus 519 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~ 592 (808)
...+..+...+...|++++|+..|+++++.. .+..++..+...+...|++++|...++++.+... .++ ...|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3455666666666666666666666666654 4556666666666666666666666666654211 011 3455
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 046719 593 NSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHG 672 (808)
Q Consensus 593 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 672 (808)
..+...|...|++++|+..|+++.+. .|+ . ..+...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~----------------------------------~-------~~~~~~~ 119 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRT----------------------------------A-------DILTKLR 119 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCC----------------------------------H-------HHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cch----------------------------------h-------HHHHHHh
Confidence 55555666666666666666655542 222 1 2334445
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 046719 673 DVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWY 751 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 751 (808)
++++|...++++.+ ..|+ ...+..++..+...|++++|...++++.+.. +.+..++..++.++...|++++|+..+
T Consensus 120 ~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 120 NAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 56666666666665 2333 2356666666666666666666666666531 224556666666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 752 REMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 752 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
+++++..+. +...+..++.++...|++++|...++++++..
T Consensus 197 ~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 197 NKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 666665544 56666666666666666666666666666655
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.6e-14 Score=142.33 Aligned_cols=227 Identities=13% Similarity=0.039 Sum_probs=182.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----HHH
Q 046719 483 NVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMG--PT----LVT 556 (808)
Q Consensus 483 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~ 556 (808)
....+..+...+...|++++|...|+++.+.. .+...+..+...+...|++++|+..++++++.... ++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678889999999999999999999999886 68899999999999999999999999999875211 12 578
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHH
Q 046719 557 FNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIR 636 (808)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 636 (808)
+..+...+...|++++|...++++.+. .|+. ..+...|++++|...++++....
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~----------------- 135 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN----------------- 135 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-----------------
Confidence 899999999999999999999999984 4553 33455666777777777766531
Q ss_pred cCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 046719 637 EGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELV 716 (808)
Q Consensus 637 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~ 716 (808)
+.+...+..++..+...|++++|+..++++++.. +.+..++..++.++...|++++|...+
T Consensus 136 ------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 136 ------------------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp ------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 2234566677788888888888888888888742 335667888888888889999999888
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 717 NDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 717 ~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
+++++. .| +...|..++.++.+.|++++|...++++++..
T Consensus 197 ~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 197 NKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHh--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 888874 34 47778888888889999999999998888765
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=1.2e-14 Score=155.36 Aligned_cols=221 Identities=12% Similarity=-0.003 Sum_probs=142.5
Q ss_pred HHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHCCCCcCHHhHH
Q 046719 556 TFNALINGLCKKG---RVMEAEDMLPQITSSGLNPDVITYNSLISGYSSL----GSSQKCLELYENMKKLGIKPSLRTYH 628 (808)
Q Consensus 556 ~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~ 628 (808)
.+..|...|...| +.++|++.|++..+.| .++...+..+...|... +++++|+..|++.. +-+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHH
Confidence 5566666666666 6667777777766655 33444445555555443 56777777777765 23344444
Q ss_pred HHHHH-H--HHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046719 629 PLLSG-C--IREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHG-----DVQKALVLHSEMVDQGIRPDKMTYNSL 699 (808)
Q Consensus 629 ~l~~~-~--~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~g~~pd~~~~~~l 699 (808)
.+... + ...+ .++|.+.|++..+.| +...+..|...|. .| ++++|++.|++.. .| +...+..|
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHH
Confidence 44444 2 2344 777777777777655 4556666777766 45 8899999988886 33 56677788
Q ss_pred HHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 700 IFGHLR----EGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCN----LKDFGGAYIWYREMFENGFIPSFCIYNELTN 771 (808)
Q Consensus 700 ~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 771 (808)
+..|.. ..++++|..++++..+.|. ......|+..|.. ..|.++|..+|+++.+.|.. +.......+.
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~ 400 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLE 400 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHH
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHH
Confidence 877776 3488999999999887653 3455667777764 45889999999999887754 3333333333
Q ss_pred HHHhcCChhHHHHHHHHHHHcC
Q 046719 772 GLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 772 ~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
.....++..+|..++++-.+..
T Consensus 401 ~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 401 APLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhc
Confidence 3334456677777777766543
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=4.5e-13 Score=133.21 Aligned_cols=226 Identities=14% Similarity=-0.012 Sum_probs=127.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHH
Q 046719 518 NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCK----KGRVMEAEDMLPQITSSGLNPDVITYN 593 (808)
Q Consensus 518 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 593 (808)
+..++..+...+...|++++|+..|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444455555555555555555555555542 134444555555555 555555555555555433 344444
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 594 SLISGYSS----LGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYA 669 (808)
Q Consensus 594 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 669 (808)
.+...|.. .+++++|+..|++.. +.+ +...+..+...|.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~----------------------------------~~~---~~~a~~~lg~~~~ 121 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKAC----------------------------------DLK---YAEGCASLGGIYH 121 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHH----------------------------------HTT---CHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHH----------------------------------HcC---CccHHHHHHHHHH
Confidence 55555554 555555555555444 432 3445555555555
Q ss_pred c----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-
Q 046719 670 E----HGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLR----EGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCN- 740 (808)
Q Consensus 670 ~----~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~- 740 (808)
. .|++++|++.|++..+.+ +...+..++..+.. .+++++|+.++++..+.+ +...+..++.+|..
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHG 195 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 5 666666666666666643 34455566666665 666666666666666532 34555566666666
Q ss_pred ---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC
Q 046719 741 ---LKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQ----EGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 741 ---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~~~ 795 (808)
.+++++|+.+++++.+.++ ...+..++.+|.. .|++++|..+++++.+.+++
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 6666666666666666532 4555666666666 66666666666666666543
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=5.4e-14 Score=139.87 Aligned_cols=233 Identities=11% Similarity=0.040 Sum_probs=141.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC--HHhHHHHHHHHHHc
Q 046719 560 LINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS--LRTYHPLLSGCIRE 637 (808)
Q Consensus 560 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~ 637 (808)
....+...|++++|+..|+++.+.. +.+...+..+...|...|++++|+..++++.+....++ ...+..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3344444444444444444444432 11223444444445555555555555555444211111 11244444445555
Q ss_pred C-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHH
Q 046719 638 G-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKEL 715 (808)
Q Consensus 638 ~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~ 715 (808)
| +++|.+.|++.++.. +.+...+..++..|...|++++|++.++++++. .| +...+..++..+...+++++|...
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 555555555555432 334567777888888888888888888888774 44 445677777444445588888888
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHccCC---hhHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCChhHHHH
Q 046719 716 VNDMKVKGLIP-KADTYNILVKGYCNLKD---FGGAYIWYREMFENG-FIPS------FCIYNELTNGLKQEGKLKEAQI 784 (808)
Q Consensus 716 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~l~~~g~~~~A~~ 784 (808)
++++++ ..| +...+..++.++...|+ +++|...++++++.. ..|+ ...+..++..+...|++++|..
T Consensus 165 ~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 165 FVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888877 345 36667777888877777 778888888887642 1122 2567778888888888888888
Q ss_pred HHHHHHHcCCCCCc
Q 046719 785 LCSEISIVGKDAWT 798 (808)
Q Consensus 785 ~~~~~~~~~~~~~~ 798 (808)
.++++++..|++..
T Consensus 243 ~~~~al~~~p~~~~ 256 (272)
T 3u4t_A 243 AWKNILALDPTNKK 256 (272)
T ss_dssp HHHHHHHHCTTCHH
T ss_pred HHHHHHhcCccHHH
Confidence 88888888877654
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=1.5e-13 Score=146.80 Aligned_cols=220 Identities=14% Similarity=0.056 Sum_probs=131.1
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHhCCCCCCHHHHH
Q 046719 521 IYNMLIDGSCTMG---RIKDAFKFFDEMVKREMGPTLVTFNALINGLCKK----GRVMEAEDMLPQITSSGLNPDVITYN 593 (808)
Q Consensus 521 ~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~ 593 (808)
.+..+...|...| +.++|+..|++..+.|. ++...+..|...|... +++++|...|++.. . -+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 5556666666666 66666666666666542 3444444455555433 46666666666665 2 2444555
Q ss_pred HHHHH-H--HcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHc-----CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 594 SLISG-Y--SSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIRE-----GIVAVEKLFNEMLQINLVPDLLVYNALI 665 (808)
Q Consensus 594 ~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 665 (808)
.+... | ...+++++|+..|++..+.| +...+..+...|... ..++|.+.|++.. . -+...+..|.
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg 325 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-G---REVAADYYLG 325 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHH
Confidence 55554 3 34666777777777766644 444555555555432 2667777777666 2 2455666666
Q ss_pred HHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 666 HCYAE----HGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLR----EGKLSEVKELVNDMKVKGLIPKADTYNILVKG 737 (808)
Q Consensus 666 ~~~~~----~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 737 (808)
..|.. ..++++|...|++..+.| +......|+..|.. ..+..+|..++++..+.|. ++.......+..
T Consensus 326 ~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~ 401 (452)
T 3e4b_A 326 QIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEA 401 (452)
T ss_dssp HHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHT
T ss_pred HHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Confidence 66655 348889999999888865 34455677777764 4578889999888887663 222222222222
Q ss_pred HHccCChhHHHHHHHHHHH
Q 046719 738 YCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~ 756 (808)
....++..+|..+.++..+
T Consensus 402 ~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 402 PLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHH
Confidence 2334466777777776654
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=9.6e-14 Score=138.05 Aligned_cols=250 Identities=10% Similarity=0.030 Sum_probs=155.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHH
Q 046719 522 YNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPD--VITYNSLISGY 599 (808)
Q Consensus 522 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~ 599 (808)
+......+...|++++|+..|+++++.. +.+...+..+...+...|++++|+..++++.+....++ ...|..+...|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3444455555566666666665555542 22333555555556666666666666666555221111 12355566666
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 046719 600 SSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKAL 678 (808)
Q Consensus 600 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 678 (808)
...|++++|+..|++..+.. +.+...+..+...+...| +++|.+.+++.++.. +.+...+..+...+...+++++|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665532 223455555666666666 666666666666542 445666777773344456999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC---HhHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHccCChhHH
Q 046719 679 VLHSEMVDQGIRPD-KMTYNSLIFGHLREGK---LSEVKELVNDMKVKG-LIPK------ADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 679 ~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g-~~p~------~~~~~~l~~~~~~~g~~~~A 747 (808)
+.|+++++. .|+ ...+..++.++...|+ +++|...++++.+.. -.|+ ...|..++..|...|++++|
T Consensus 163 ~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999884 454 5577888888888888 888998888876531 1133 25677889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 748 YIWYREMFENGFIPSFCIYNELTNGLKQEG 777 (808)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 777 (808)
..+++++++..|. +...+..+.......+
T Consensus 241 ~~~~~~al~~~p~-~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 241 DAAWKNILALDPT-NKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHC-------
T ss_pred HHHHHHHHhcCcc-HHHHHHHhhhhhcccc
Confidence 9999999998877 7777777766655444
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=4.6e-14 Score=134.50 Aligned_cols=197 Identities=15% Similarity=0.010 Sum_probs=95.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHH
Q 046719 133 SLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLIS 212 (808)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 212 (808)
+...+..+...+.+.|++++|...|+++++..+. +...|..+..++.+.|++++|+..|++.++..+ .+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 3344455555555555555555555555544333 444555555555555555555555555554332 13444555555
Q ss_pred HHHcc-----------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 046719 213 GFCKE-----------KKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLL 281 (808)
Q Consensus 213 ~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 281 (808)
++.+. |++++|+..|++..+..+. +...|..+...|...|++++|...|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 5555666555555554322 34455555555555566666666665555544 4455555555
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHH
Q 046719 282 GGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEEL 335 (808)
Q Consensus 282 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 335 (808)
..|...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555666666666665555542 113445555555555556665555555543
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=1.7e-12 Score=128.97 Aligned_cols=227 Identities=13% Similarity=-0.049 Sum_probs=186.8
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 046719 482 PNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCT----MGRIKDAFKFFDEMVKREMGPTLVTF 557 (808)
Q Consensus 482 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 557 (808)
-+..++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|+..|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 367788889999999999999999999998842 56778889999999 999999999999999875 78889
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCcCHHhHHH
Q 046719 558 NALINGLCK----KGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSS----LGSSQKCLELYENMKKLGIKPSLRTYHP 629 (808)
Q Consensus 558 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 629 (808)
..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---------- 144 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---------- 144 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----------
Confidence 999999999 999999999999999864 67888888888888 888888888888877643
Q ss_pred HHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046719 630 LLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAE----HGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLR 705 (808)
Q Consensus 630 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~ 705 (808)
+...+..+...|.. .+++++|+..|++..+.+ +...+..++..|..
T Consensus 145 ---------------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 145 ---------------------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHH 194 (273)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred ---------------------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 22334445555655 788888888888888753 45677788888888
Q ss_pred ----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCC
Q 046719 706 ----EGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCN----LKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 706 ----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 760 (808)
.+++++|+.+++++.+.+ | ...+..++.+|.. .+++++|+++++++.+.++.
T Consensus 195 g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 195 GEGATKNFKEALARYSKACELE--N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 888899998888888753 2 6677788888888 88999999999998887654
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=3e-13 Score=132.70 Aligned_cols=204 Identities=12% Similarity=0.025 Sum_probs=142.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 591 TYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYA 669 (808)
Q Consensus 591 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 669 (808)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...| +++|.+.++++++.. +.+...+..++..|.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 34444445555555555555555554431 223444444555555555 555555555555542 335667777888888
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHH
Q 046719 670 EHGDVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAY 748 (808)
Q Consensus 670 ~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 748 (808)
..|++++|++.++++.+.+..|+ ...+..++..+...|++++|..+++++.+.. +.+...+..++.++...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888877333453 4477788888888888888888888887742 235777888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 749 IWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.+++++++..+. +...+..++.++...|++++|..+++++.+..|++..
T Consensus 196 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 196 QYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 888888877655 6777888888888888888888888888888877654
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=7.4e-14 Score=144.11 Aligned_cols=233 Identities=10% Similarity=0.042 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 046719 555 VTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGS-SQKCLELYENMKKLGIKPSLRTYHPLLSG 633 (808)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 633 (808)
..|..+...+...|++++|+..++++++.. +-+...|+.+...+...|+ +++|+..|+++++.. +-+...|..+...
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 344444445555555555555555555432 1234455555555555554 555555555555432 2234455555555
Q ss_pred HHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh-cCCHh
Q 046719 634 CIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLR-EGKLS 710 (808)
Q Consensus 634 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~-~g~~~ 710 (808)
+...| +++|...|+++++.+ +.+...|..+..++...|++++|+..|+++++. .| +...|+.++.++.. .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 55555 556666666666543 446778888888888889999999999999884 55 45588888888888 56557
Q ss_pred HH-----HHHHHHHHHCCCCC-CHHHHHHHHHHHHccC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----
Q 046719 711 EV-----KELVNDMKVKGLIP-KADTYNILVKGYCNLK--DFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG----- 777 (808)
Q Consensus 711 ~A-----~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g----- 777 (808)
+| +..++++++ +.| +...|..++.++...| ++++|++.++++ +.++. +..++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~-~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS-SPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC-CHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC-CHHHHHHHHHHHHHHhccccc
Confidence 77 488888887 556 5678888888888888 688999988887 55554 6788888999888874
Q ss_pred ----ChhHHHHHHHHH-HHcCCCC
Q 046719 778 ----KLKEAQILCSEI-SIVGKDA 796 (808)
Q Consensus 778 ----~~~~A~~~~~~~-~~~~~~~ 796 (808)
..++|+++++++ .+..|..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred chHHHHHHHHHHHHHHHHHhCchh
Confidence 258899999998 7777653
No 49
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=4.2e-11 Score=131.82 Aligned_cols=475 Identities=10% Similarity=0.023 Sum_probs=277.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCC---hHHHHH
Q 046719 114 LPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGD---LKRACE 190 (808)
Q Consensus 114 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~ 190 (808)
...+-...|...+..+ +.|...|..++..+.+.+.++.++.+|++++..-+. ....|..-+..-.+.|+ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~-~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL-MANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455555555555554 468888999999998888999999999998886443 77788888888888888 899999
Q ss_pred HHHHhhhCCC-CCChhhHHHHHHHHHccCCH--------hHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHHHh-------
Q 046719 191 IFDGMEKSRT-RPNVFVYNVLISGFCKEKKI--------RDAEKLFDEMCQ-RKL-VPT-RVTYNTLVDGYCK------- 251 (808)
Q Consensus 191 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~m~~-~~~-~p~-~~~~~~li~~~~~------- 251 (808)
+|++.+...+ .|++..|...+.-..+.++. +...++|+.... .|. .|+ ...|...+....+
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9999887631 36788888877766665553 234467776554 354 443 4577777765442
Q ss_pred --cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHH
Q 046719 252 --VGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVM 329 (808)
Q Consensus 252 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 329 (808)
+++++.+..+|++.+......-..+|..... +.+.-+...+..++.+ ...+++.|.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e---------------------~~~~y~~Ar 262 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGE---------------------LSAQYMNAR 262 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHH---------------------HHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHH---------------------hhHHHHHHH
Confidence 3345667777777664211111122221111 1000000011111111 011233334
Q ss_pred HHHHHHHhC--CC----CcChhcHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-------CH
Q 046719 330 ALYEELSGR--GF----RINSYTCSILLNALCKEG-KVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRTG-------DL 395 (808)
Q Consensus 330 ~~~~~~~~~--~~----~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~ 395 (808)
..+.++... ++ +....... ....-..+ ...... ..|...+..--..+ ..
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ql---------------~lW~~yi~fEk~~~~~l~~~~~~ 325 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQQL---------------LIWLEWIRWESDNKLELSDDLHK 325 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHHHH---------------HHHHHHHHHHHTCTTCCCHHHHH
T ss_pred HHHHHHHHHHHhHhhccccccccch--hccCCCCchhHHHHH---------------HHHHHHHHHHHhCCccccchhhH
Confidence 434332210 11 00000000 00000000 000111 22333333222221 12
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 046719 396 NRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAE-EWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEE 474 (808)
Q Consensus 396 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 474 (808)
+.+..+|++..... +-+...|...+..+...|+.++|. +++++.... ++.+...|...+...-+.|+++.|.++|++
T Consensus 326 ~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34556677776653 336777877777777788888886 888888764 233555667777777788888888888888
Q ss_pred HHHCCC---------CC------------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhc-
Q 046719 475 MENSGM---------KP------------NVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTM- 532 (808)
Q Consensus 475 m~~~~~---------~~------------~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~- 532 (808)
+..... .| ...+|...+....+.|..+.|..+|....+.-.......|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 765310 12 12357777777777888888888888887651111233443333333333
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCCHHHHHH
Q 046719 533 GRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNP--DVITYNSLISGYSSLGSSQKCLE 610 (808)
Q Consensus 533 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 610 (808)
++++.|.++|+..++. ++.+...+...+......|+.+.|..+|+..+.....+ ....|...+..-.+.|+.+.+..
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4588888888888876 45567777778887778888888888888888753221 23577778887788888888888
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHH
Q 046719 611 LYENMKKLGIKPSLRTYHPLLSGC 634 (808)
Q Consensus 611 ~~~~~~~~~~~p~~~~~~~l~~~~ 634 (808)
+.+++.+. .|+......+..-|
T Consensus 563 v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 563 LEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHh--CCCCcHHHHHHHHh
Confidence 88888875 34444444444433
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=1.1e-13 Score=135.08 Aligned_cols=203 Identities=9% Similarity=-0.010 Sum_probs=120.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 591 TYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYA 669 (808)
Q Consensus 591 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 669 (808)
.|..+...+...|++++|...|+++.+. .+.+...+..+...+...| +++|.+.++++++.. +.+...+..++..+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 3444444444455555555555554442 1223444444444444444 555555555554432 334566666777777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHH
Q 046719 670 EHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYI 749 (808)
Q Consensus 670 ~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 749 (808)
..|++++|++.++++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..++.++...|++++|+.
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777777642 3345567777777777777777777777776631 2356667777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 750 WYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.++++++..+. +...+..++.++...|++++|...++++++..|++..
T Consensus 181 ~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 181 QFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 77777776554 6677777777777777777777777777777776554
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=2.4e-13 Score=140.27 Aligned_cols=246 Identities=13% Similarity=0.093 Sum_probs=170.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046719 520 QIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGR-VMEAEDMLPQITSSGLNPDVITYNSLISG 598 (808)
Q Consensus 520 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 598 (808)
..|..+...+...|++++|+..+++++... +.+..+|+.+...+...|+ +++|+..|+++++.. +.+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 345566666666677777777777766653 2356666666666777775 777777777776642 2245666667777
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHH
Q 046719 599 YSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAE-HGDVQK 676 (808)
Q Consensus 599 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 676 (808)
+...|++++|+..|+++++.. +-+...|..+...+...| +++|.+.|+++++.+ +.+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 777777777777777776642 334566666666666667 777777777777654 4466788888888887 566577
Q ss_pred H-----HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC--CHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccC-----
Q 046719 677 A-----LVLHSEMVDQGIRPD-KMTYNSLIFGHLREG--KLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLK----- 742 (808)
Q Consensus 677 A-----~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g----- 742 (808)
| +..|+++++ +.|+ ...|+.++.++...| ++++|++.+.++ + ..| +...+..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhccccc
Confidence 7 588888888 4564 458888888888888 588999888887 4 344 5677888888888874
Q ss_pred ----ChhHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHh
Q 046719 743 ----DFGGAYIWYREM-FENGFIPSFCIYNELTNGLKQ 775 (808)
Q Consensus 743 ----~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~l~~ 775 (808)
.+++|+++|+++ .+.+|. ....|..++..+..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQS 365 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHH
Confidence 258899999998 777655 56777777666554
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=7.6e-13 Score=127.11 Aligned_cols=205 Identities=8% Similarity=-0.034 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 590 ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCY 668 (808)
Q Consensus 590 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 668 (808)
..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...| +++|.+.++++++.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344445555555555555555555555431 223444455555555555 555555555555542 34566777888888
Q ss_pred Hcc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChh
Q 046719 669 AEH-GDVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFG 745 (808)
Q Consensus 669 ~~~-g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~ 745 (808)
... |++++|+..++++.+.+..|+ ...+..++.++...|++++|...++++.+. .| +...+..++.++...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHH
Confidence 888 999999999999887433444 457888889999999999999999998874 34 4777888899999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 746 GAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 746 ~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+|..+++++++..+..+...+..++..+...|+.++|..+++.+.+..|++..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 99999999988776237777888888888999999999999998888877655
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=1.5e-13 Score=136.87 Aligned_cols=244 Identities=12% Similarity=-0.028 Sum_probs=136.3
Q ss_pred cCCHHHHHHHHHHHHhCCC---CcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 046719 497 DCKLLEAEIVLKDMENRGV---LPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEA 573 (808)
Q Consensus 497 ~~~~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 573 (808)
.+++++|...|+++.+... +.+..++..+...+...|++++|+..|+++++.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4555556666655555421 1123445555555555555555555555555542 22455555555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCC
Q 046719 574 EDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQIN 653 (808)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~ 653 (808)
...|+++.+.. +.+...|..+...|...|++++|...|+++.+ .
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~----------------------------------~- 140 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ----------------------------------D- 140 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------------H-
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH----------------------------------h-
Confidence 55555555432 12344455555555555555555555555544 2
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-----H
Q 046719 654 LVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-----A 728 (808)
Q Consensus 654 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~ 728 (808)
.|+.......+..+...|++++|...+++..+. .+++...+ .++..+...++.++|...++++.+. .|+ .
T Consensus 141 -~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 215 (275)
T 1xnf_A 141 -DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGW-NIVEFYLGNISEQTLMERLKADATD--NTSLAEHLS 215 (275)
T ss_dssp -CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHH
T ss_pred -CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc--ccccccccc
Confidence 122222222233334557778888887777664 23333333 4666677777777787777777652 221 4
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILC 786 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~ 786 (808)
..+..++.++.+.|++++|...++++++..|. +. .....++...|++++|+..+
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC---HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH---HHHHHHHHHHHHHHhhHHHH
Confidence 66778888888888888888888888876543 32 22355677778888887765
No 54
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.57 E-value=9.1e-11 Score=129.18 Aligned_cols=444 Identities=12% Similarity=0.065 Sum_probs=259.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCC---hHHHHHH
Q 046719 290 MEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGK---VEIAEEI 366 (808)
Q Consensus 290 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~ 366 (808)
..+-+..|++.+..+ +-|..+|..++..+.+.++++.+..+|+.+... ++.....|...+..-.+.|+ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 444555555555543 347778888888888888888888888888876 44456677777777777777 8888888
Q ss_pred HHHHHHCCC-CCCHhhHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHH---------
Q 046719 367 VGKEIENGL-VPDEVMFNTIVSGYCRTGDL--------NRAMLAIQQMEN-HGL-APN-CITFNTLIDKFC--------- 425 (808)
Q Consensus 367 ~~~~~~~~~-~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~~-~~~~~~li~~~~--------- 425 (808)
|++.+...+ .|++..|...+....+.++. +....+|+.... .|. .++ ...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 888877541 36777787777766554443 334466666553 344 443 456666665443
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 046719 426 ELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEI 505 (808)
Q Consensus 426 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~ 505 (808)
..++++.+..+|.+++......-..+|......-...+. ..+.+++.+. ...++.|..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar~ 263 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHHH
Confidence 234566777777777642111112233222211111010 0111111110 112233333
Q ss_pred HHHHHHh--CCC----C-----------c--c------hhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCC
Q 046719 506 VLKDMEN--RGV----L-----------P--N------AQIYNMLIDGSCTMG-------RIKDAFKFFDEMVKREMGPT 553 (808)
Q Consensus 506 ~~~~m~~--~~~----~-----------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~ 553 (808)
.+.++.. .++ + | + ...|...+..--..+ ..+.+..+|++++.. ++-+
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~ 342 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFA 342 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTC
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCC
Confidence 3333211 011 0 1 0 124555554333222 134456778888775 4457
Q ss_pred HHHHHHHHHHHHhcCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC---------CcC
Q 046719 554 LVTFNALINGLCKKGRVMEAE-DMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGI---------KPS 623 (808)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~p~ 623 (808)
...|...+..+...|+.++|. .+|++.... ++.+...|..++....+.|++++|.++|+++..... .|+
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 888888888888888888886 888888864 344666777888888888999999999988876310 121
Q ss_pred ------------HHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCC
Q 046719 624 ------------LRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHG-DVQKALVLHSEMVDQGI 689 (808)
Q Consensus 624 ------------~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~ 689 (808)
...|...+....+.| .+.|.++|.++++.-.......|...+..-.+.| +.+.|.++|+..++. .
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-F 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-H
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C
Confidence 224555555555555 7777777777776410112223333333333433 477777777777774 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 690 RPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP--KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 690 ~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+-+...|...+......|+.+.|..+|++++.....+ ....|...+.--.+.|+.+.+.++.+++.+..|+
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3344456666776777777777777777777643211 2345666666666777777777777777776554
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=2e-13 Score=135.89 Aligned_cols=225 Identities=11% Similarity=-0.076 Sum_probs=155.1
Q ss_pred CChHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHH
Q 046719 568 GRVMEAEDMLPQITSSGLN---PDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVE 643 (808)
Q Consensus 568 g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~ 643 (808)
|++++|+..++++.+.... .+..+|..+...+...|++++|...|+++.+.. +.+..++..+...+...| +++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4445555555555443110 123344555555555555555555555555431 223445555555555555 55566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 046719 644 KLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKG 723 (808)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 723 (808)
+.|+++++.. +.+...+..++.+|...|++++|+..++++.+ ..|+..........+...|++++|...++++...
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 6666555542 34567888899999999999999999999998 4565554455555667789999999999888764
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 724 LIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP---SFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 724 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
..++...+ .++..+...++.++|+..++++++..+.. +...+..++.++...|++++|...+++++..+|+++.
T Consensus 174 ~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23344444 46777888899999999999998654321 2578899999999999999999999999999998877
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=3.7e-13 Score=131.14 Aligned_cols=211 Identities=12% Similarity=0.069 Sum_probs=130.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHH
Q 046719 557 FNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIR 636 (808)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 636 (808)
+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+...+..
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVV 103 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence 3334444444444444444444444421 1233444444445555555555555555544431 2234444444455555
Q ss_pred cC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 046719 637 EG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKEL 715 (808)
Q Consensus 637 ~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~ 715 (808)
.| +++|.+.++++.+.. +.+...+..++..+...|++++|+..++++.+. .+.+...+..++..+...|++++|...
T Consensus 104 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL-NENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55 555555555555543 445667788888899999999999999999884 233566888999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 716 VNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGL 773 (808)
Q Consensus 716 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 773 (808)
++++.+.. +.+..++..++.++...|++++|...++++++..+. +...+..+....
T Consensus 182 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l~ 237 (243)
T 2q7f_A 182 FAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHHHTC--
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHHHHHHH
Confidence 99988742 335778889999999999999999999999988766 666666554443
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=3.9e-12 Score=124.69 Aligned_cols=207 Identities=12% Similarity=-0.041 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046719 520 QIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGY 599 (808)
Q Consensus 520 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 599 (808)
..+..+...+...|++++|+..|+++++.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 344555555555555555555555555432 2234445555555555555555555555544431 11334444444444
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHH
Q 046719 600 SSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVP-DLLVYNALIHCYAEHGDVQKAL 678 (808)
Q Consensus 600 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 678 (808)
...|+ +++|.+.++++.+.+..| +...+..++..+...|++++|.
T Consensus 116 ~~~g~----------------------------------~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 116 YEQKR----------------------------------YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp HHTTC----------------------------------HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhH----------------------------------HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 44444 445555554444411223 4566777888888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 679 VLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 679 ~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
+.++++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..++.++...|++++|..+++++.+..
T Consensus 162 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 162 EYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999988742 3346678888999999999999999999988742 3356778888888889999999999999998876
Q ss_pred CCCCHHH
Q 046719 759 FIPSFCI 765 (808)
Q Consensus 759 ~~~~~~~ 765 (808)
+. +...
T Consensus 240 p~-~~~~ 245 (252)
T 2ho1_A 240 PG-SLEY 245 (252)
T ss_dssp TT-SHHH
T ss_pred CC-CHHH
Confidence 55 4443
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=8.8e-13 Score=122.16 Aligned_cols=169 Identities=13% Similarity=0.061 Sum_probs=135.9
Q ss_pred CHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 623 SLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIF 701 (808)
Q Consensus 623 ~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~ 701 (808)
+...|..+...+...| +++|.+.|++.++.+ +.+...+..++.+|.+.|++++|+..++++... .+.+...+..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CchhHHHHHHHHH
Confidence 3445555666666666 666666666666543 446778888889999999999999999998884 2334557888889
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 046719 702 GHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLK 780 (808)
Q Consensus 702 ~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 780 (808)
.+...++++.|...+.++.+ ..| +...+..++.++.+.|++++|++.|+++++..|. +..++..++.+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 99999999999999999887 344 5778889999999999999999999999998777 8889999999999999999
Q ss_pred HHHHHHHHHHHcCCCC
Q 046719 781 EAQILCSEISIVGKDA 796 (808)
Q Consensus 781 ~A~~~~~~~~~~~~~~ 796 (808)
+|+..++++++.+|++
T Consensus 159 ~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCccC
Confidence 9999999999887753
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=3e-13 Score=143.63 Aligned_cols=274 Identities=17% Similarity=0.123 Sum_probs=155.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcch----hHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHH
Q 046719 490 LINWLCKDCKLLEAEIVLKDMENRGVLPNA----QIYNMLIDGSCTMGRIKDAFKFFDEMVKR----E-MGPTLVTFNAL 560 (808)
Q Consensus 490 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l 560 (808)
+...+...|++++|...|+++.+.+.. +. ..+..+...+...|++++|+..+++.++. + .+....++..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 333444555555555555555443221 11 24555555555666666666666555432 0 01123455566
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHcCCC-----------------HHHHHHHHHHHHHC
Q 046719 561 INGLCKKGRVMEAEDMLPQITSS----GLN-PDVITYNSLISGYSSLGS-----------------SQKCLELYENMKKL 618 (808)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~~ 618 (808)
...|...|++++|...+++..+. +-. ....++..+...|...|+ +++|++.+++..+
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~- 211 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK- 211 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH-
Confidence 66666666777666666665442 101 123466677777777777 5555555555432
Q ss_pred CCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----H
Q 046719 619 GIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGI-RPD----K 693 (808)
Q Consensus 619 ~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~pd----~ 693 (808)
+..... ........+..+...|...|++++|++.+++..+... .++ .
T Consensus 212 --------------------------~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (411)
T 4a1s_A 212 --------------------------LMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER 263 (411)
T ss_dssp --------------------------HHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred --------------------------HHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 111110 0011234566677777777777777777777765210 011 1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC-----CCH
Q 046719 694 MTYNSLIFGHLREGKLSEVKELVNDMKVKGL-IPK----ADTYNILVKGYCNLKDFGGAYIWYREMFENGFI-----PSF 763 (808)
Q Consensus 694 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~ 763 (808)
.++..++..+...|++++|...++++.+... ..+ ..++..++.++...|++++|..+++++++.... ...
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 343 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH
Confidence 2566777777778888888877777654210 011 355667777777888888888888777653211 113
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 764 CIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 764 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
..+..++.+|...|++++|..++++++...
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 466777778888888888888888777654
No 60
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.50 E-value=4.6e-12 Score=121.58 Aligned_cols=195 Identities=9% Similarity=-0.094 Sum_probs=89.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhc-
Q 046719 104 ILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKI- 182 (808)
Q Consensus 104 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 182 (808)
.+...+...|++++|...|..+.+.. +.+..++..++.+|...|++++|...|+++....+. +...+..+...+...
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 13 QLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLCGRL 90 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhc
Confidence 34444555555555555555544432 223444555555555555555555555555444332 344444455555555
Q ss_pred CChHHHHHHHHHhhhCCCCC-ChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 046719 183 GDLKRACEIFDGMEKSRTRP-NVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSAL 261 (808)
Q Consensus 183 g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 261 (808)
|++++|...|+++.+.+..| +...+..+...+...|++++|...|+++.+.... +...+..+...+.+.|++++|...
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 169 (225)
T 2vq2_A 91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDADYY 169 (225)
T ss_dssp CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555544411111 2334444444555555555555555554443211 344444444445555555555555
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 046719 262 RERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEME 301 (808)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 301 (808)
++++....+..+...+..+...+...|+.+++..+++.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 170 FKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5544443221233334444444444444444444444443
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=4.5e-13 Score=141.98 Aligned_cols=301 Identities=14% Similarity=0.012 Sum_probs=174.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCc-c
Q 046719 448 NVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPN----VVSYGSLINWLCKDCKLLEAEIVLKDMENR----GVLP-N 518 (808)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~~-~ 518 (808)
....+......+...|++++|...|++..... +.+ ..++..+...+...|++++|...+++.... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 44455556666666777777777777666542 222 234555566666666666666666654332 1111 1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHH
Q 046719 519 AQIYNMLIDGSCTMGRIKDAFKFFDEMVKREM-GPT----LVTFNALINGLCKKGR--------------------VMEA 573 (808)
Q Consensus 519 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~A 573 (808)
..++..+...+...|++++|+..+++.++... .++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 33455555556666666666666655544200 001 2244444445555555 4444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHHcC-HHHHHHHHHHHHH
Q 046719 574 EDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS-LRTYHPLLSGCIREG-IVAVEKLFNEMLQ 651 (808)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~-~~~a~~~~~~~~~ 651 (808)
...+++..+. ....+..|. ..++..+...+...| +++|.+.+++.++
T Consensus 167 ~~~~~~al~~-------------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 167 VDFYEENLSL-------------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHHHH-------------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444443220 000010111 223444444455555 5555555555543
Q ss_pred CCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 652 INL-VPD----LLVYNALIHCYAEHGDVQKALVLHSEMVDQ----GIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 652 ~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
... .++ ...+..++..|...|++++|...+++..+. +..+. ..++..++..+...|++++|..+++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 100 111 346778888899999999999999888752 11111 34778889999999999999999998765
Q ss_pred CCC-CCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHCCC----C-CCHHHHHHHHHHHHhcCChh
Q 046719 722 KGL-IPK----ADTYNILVKGYCNLKDFGGAYIWYREMFENGF----I-PSFCIYNELTNGLKQEGKLK 780 (808)
Q Consensus 722 ~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-~~~~~~~~l~~~l~~~g~~~ 780 (808)
... .++ ..++..++.++...|++++|..+++++++... . ....++..++..+...|+..
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 211 112 45677889999999999999999999876411 1 12566778888888888763
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=7.3e-13 Score=136.21 Aligned_cols=274 Identities=15% Similarity=0.107 Sum_probs=171.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHH
Q 046719 491 INWLCKDCKLLEAEIVLKDMENRGVLPN----AQIYNMLIDGSCTMGRIKDAFKFFDEMVKR----EMG-PTLVTFNALI 561 (808)
Q Consensus 491 l~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~ 561 (808)
...+...|++++|...|+++.+.... + ...+..+...+...|++++|+..+++.+.. +.. ....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 34445555555555555555543211 1 234555566666666666666666655432 111 1244556666
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCC--------------------HHHHHHHHHHHH
Q 046719 562 NGLCKKGRVMEAEDMLPQITSSGL-NPD----VITYNSLISGYSSLGS--------------------SQKCLELYENMK 616 (808)
Q Consensus 562 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~ 616 (808)
..+...|++++|...+++..+... .++ ..++..+...|...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 667777777777777766544100 011 2356666666766666 555555554433
Q ss_pred HCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC
Q 046719 617 KLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQ----GIRPD 692 (808)
Q Consensus 617 ~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~pd 692 (808)
. +..... ........+..+...+...|++++|.+.++++.+. +..+.
T Consensus 171 ~---------------------------~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 221 (338)
T 3ro2_A 171 S---------------------------LVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA 221 (338)
T ss_dssp H---------------------------HHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred H---------------------------HHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHH
Confidence 2 111110 00112346777888888899999999999888753 11111
Q ss_pred -HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC-----C
Q 046719 693 -KMTYNSLIFGHLREGKLSEVKELVNDMKVKGL-IPK----ADTYNILVKGYCNLKDFGGAYIWYREMFENGFI-----P 761 (808)
Q Consensus 693 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~ 761 (808)
..++..++..+...|++++|..+++++.+... .++ ..++..++.++...|++++|..+++++++.... .
T Consensus 222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 301 (338)
T 3ro2_A 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG 301 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH
Confidence 22678889999999999999999998764210 111 456778899999999999999999998764221 1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 046719 762 SFCIYNELTNGLKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 762 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
....+..++.++.+.|++++|..+++++++..+
T Consensus 302 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 302 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 145778899999999999999999999987654
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=2e-12 Score=136.94 Aligned_cols=283 Identities=14% Similarity=0.088 Sum_probs=196.3
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-
Q 046719 481 KPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPN---AQIYNMLIDGSCTMGRIKDAFKFFDEMVKR----EMGP- 552 (808)
Q Consensus 481 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~- 552 (808)
......+......+...|++++|...|+++.+.+.... ..++..+...+...|++++|+..+++++.. +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34455666677778888888888888888877533211 246777778888888888888888876543 1111
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCC--------------------HHH
Q 046719 553 TLVTFNALINGLCKKGRVMEAEDMLPQITSSGL-NPD----VITYNSLISGYSSLGS--------------------SQK 607 (808)
Q Consensus 553 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~ 607 (808)
...++..+...|...|++++|...+++..+... .++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 244566777778888888888888877764210 011 2356666666666666 444
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 046719 608 CLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVP-DLLVYNALIHCYAEHGDVQKALVLHSEMVD 686 (808)
Q Consensus 608 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 686 (808)
|...+++..+ ++.. .+..+ ....+..+...|...|++++|+..++++.+
T Consensus 166 A~~~~~~al~---------------------------~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 166 AVDFYEENLS---------------------------LVTA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHHHH---------------------------HHHH---TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------------------HHHh---ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444333322 1111 11111 235778889999999999999999999886
Q ss_pred C----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 687 Q----GIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVKGL-IPK----ADTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 687 ~----g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
. +..+. ..++..++..+...|++++|..+++++.+... .++ ..++..++.++...|++++|..+++++++
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3 11111 23788999999999999999999999865210 111 45788999999999999999999999987
Q ss_pred CCCCC-C----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 757 NGFIP-S----FCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 757 ~~~~~-~----~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
..... + ...+..++.++...|++++|..+++++++..
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 42221 1 5678899999999999999999999988754
No 64
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=9e-13 Score=133.89 Aligned_cols=250 Identities=15% Similarity=0.149 Sum_probs=156.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C
Q 046719 518 NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR-------EMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSS------G 584 (808)
Q Consensus 518 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~ 584 (808)
+..++..+...+...|++++|+.+++++++. ..+....++..+...|...|++++|...++++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666777777777777777777777652 12223455666777777777777777777776642 1
Q ss_pred CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 046719 585 LNP-DVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNA 663 (808)
Q Consensus 585 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 663 (808)
-.| ...++..+...|...|++++|...++++.+. ..+......+.....+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---------------------------~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI---------------------------REKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---------------------------HHHHHCTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH---------------------------HHHhcCCCChHHHHHHHH
Confidence 112 2456777777777888888888877776542 111100111122456777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHC-------CCCCC--
Q 046719 664 LIHCYAEHGDVQKALVLHSEMVDQ------GIRPDK-MTYNSLIFGHLREGKLSEVKELVNDMKVK-------GLIPK-- 727 (808)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~~~~~------g~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~p~-- 727 (808)
++..+...|++++|++.++++.+. +..|+. .++..++.++...|++++|..+++++.+. ...+.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 888888889999999888888763 223433 36788888899999999999988888752 11111
Q ss_pred -----HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 728 -----ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 728 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
...+..+...+...+.+.+|...++++....+. ....+..++.+|.+.|++++|..+++++++..++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 222334445556677888888888888765544 6788899999999999999999999999886554
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=3.5e-11 Score=121.66 Aligned_cols=234 Identities=13% Similarity=0.074 Sum_probs=114.9
Q ss_pred hhHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHH
Q 046719 519 AQIYNMLIDGSCTM----GRI----KDAFKFFDEMVKREMGPTLVTFNALINGLCK-------KGRV-------MEAEDM 576 (808)
Q Consensus 519 ~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~ 576 (808)
...|...++...+. ++. ++|+..|++++.. .+.+...|..++..+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 44566666654443 233 5677777777764 23456667666666543 3554 666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC-HH-hHHHHHHHHHHcC-HHHHHHHHHHHHHCC
Q 046719 577 LPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS-LR-TYHPLLSGCIREG-IVAVEKLFNEMLQIN 653 (808)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~~-~~~a~~~~~~~~~~~ 653 (808)
|++.++.-.+.+...|..++..+...|++++|..+|+++.+. .|+ .. .|..+...+.+.| .++|.++|++.++..
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 666665211223446666666666666666666666666652 332 21 4444444444444 555555555554432
Q ss_pred CCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC-CCC--CH
Q 046719 654 LVPDLLVYNALIHCYA-EHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKG-LIP--KA 728 (808)
Q Consensus 654 ~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p--~~ 728 (808)
+.+...|...+.... ..|++++|.++|+++++. .| +...|..++..+.+.|++++|..+|+++++.. +.| ..
T Consensus 165 -p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 165 -RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp -TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred -CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 122222222222211 134555555555554442 22 23344444444445555555555555544421 122 23
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
..|..++..+.+.|+.++|..+++++++..
T Consensus 242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 242 EIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 344444444444455555555555544443
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=1.8e-12 Score=139.42 Aligned_cols=193 Identities=9% Similarity=-0.056 Sum_probs=134.1
Q ss_pred CHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 588 DVITYNSLISGYSSLGSS-QKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALI 665 (808)
Q Consensus 588 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 665 (808)
+...|..+...|...|++ ++|+..|++..+.. +.+...+..+...+...| +++|.+.|+++++. .|+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 344555555555555555 55555555555431 223445555555555555 56666666665553 35556667777
Q ss_pred HHHHcc---------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc--------CCHhHHHHHHHHHHHCCCCC-
Q 046719 666 HCYAEH---------GDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLRE--------GKLSEVKELVNDMKVKGLIP- 726 (808)
Q Consensus 666 ~~~~~~---------g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~g~~p- 726 (808)
.+|... |++++|++.|+++++. .| +...|..++.+|... |++++|+..++++++ +.|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~ 253 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK--VDRK 253 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH--HCGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH--hCCC
Confidence 777777 8888888888888874 44 455788888888887 888888888888877 345
Q ss_pred ---CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 046719 727 ---KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSE 788 (808)
Q Consensus 727 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~ 788 (808)
+...|..++.+|...|++++|...|+++++..+. +...+..++.++...|++++|+..+.+
T Consensus 254 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 254 ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5777888888888888888888888888887766 777888888888888888888865543
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=1.9e-12 Score=137.49 Aligned_cols=282 Identities=14% Similarity=0.086 Sum_probs=173.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 046719 416 TFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNV----KTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLI 491 (808)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 491 (808)
.+..+...+...|++++|+..++++.+.... +. ..+..+...|...|++++|...+++.....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------ 116 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------ 116 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------------
Confidence 3444455556666666666666666654222 22 345555555666666666666655543310
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC-CCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHH
Q 046719 492 NWLCKDCKLLEAEIVLKDMENRG-VLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR----E-MGPTLVTFNALINGLC 565 (808)
Q Consensus 492 ~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~ 565 (808)
...+ ......++..+...+...|++++|+..++++++. + .+....++..+...|.
T Consensus 117 -------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 117 -------------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp -------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -------------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 0000 0112344555666666666666666666665542 1 1112445666667777
Q ss_pred hcCC-----------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC
Q 046719 566 KKGR-----------------VMEAEDMLPQITSS----GLNP-DVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPS 623 (808)
Q Consensus 566 ~~g~-----------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 623 (808)
..|+ +++|...+++..+. +..+ ...++..+...|...|++++|+..+++..+.. ++
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~ 255 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA--RE 255 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--Hh
Confidence 7777 67777666665431 1011 12466677777778888888888777765420 00
Q ss_pred HHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCC-CHHHHHH
Q 046719 624 LRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQG----IRP-DKMTYNS 698 (808)
Q Consensus 624 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~p-d~~~~~~ 698 (808)
.+ ........+..++..|...|++++|+..++++.+.. ..+ ...++..
T Consensus 256 -------------~~--------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 308 (411)
T 4a1s_A 256 -------------FG--------------DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYS 308 (411)
T ss_dssp -------------HT--------------CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------cC--------------CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00 000012467778889999999999999999887631 011 1347888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 699 LIFGHLREGKLSEVKELVNDMKVKG----LIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 699 l~~~~~~~g~~~~A~~~~~~~~~~g----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
++..+...|++++|..+++++++.. ..+ ...++..++.++...|++++|..+++++++..
T Consensus 309 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 309 LGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999999999999999999986521 111 14577889999999999999999999999764
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=4.9e-12 Score=132.66 Aligned_cols=233 Identities=9% Similarity=0.040 Sum_probs=150.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--C---Cc-CHHhHHHH
Q 046719 562 NGLCKKGRVMEAEDMLPQITSSGL-NPD----VITYNSLISGYSSLGSSQKCLELYENMKKLG--I---KP-SLRTYHPL 630 (808)
Q Consensus 562 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~---~p-~~~~~~~l 630 (808)
..+...|++++|...+++..+.-. .++ ..+|..+...|...|++++|+..+++..+.. . .+ ...++..+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 344455555555555555543200 011 2345555555556666666666655554320 0 00 12344455
Q ss_pred HHHHHHcC-HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHH
Q 046719 631 LSGCIREG-IVAVEKLFNEMLQI----NLVP-DLLVYNALIHCYAEHGDVQKALVLHSEMVDQ----GIRPD-KMTYNSL 699 (808)
Q Consensus 631 ~~~~~~~~-~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~pd-~~~~~~l 699 (808)
...+...| +++|.+.+++.++. +..+ ...++..++.+|...|++++|++.+++..+. +..|+ ..++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 55555666 66666666655542 1011 1247788999999999999999999998872 23243 3478899
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHccCC---hhHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 046719 700 IFGHLREGKLSEVKELVNDMKVKGL---IPK-ADTYNILVKGYCNLKD---FGGAYIWYREMFENGFIP-SFCIYNELTN 771 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~~~g~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~~l~~ 771 (808)
+..+...|++++|..+++++.+... .|. ...+..+...+...|+ +++|+.++++. +..| ....+..++.
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHH
Confidence 9999999999999999999865210 121 2335678888899999 78888888776 2222 3557778999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCC
Q 046719 772 GLKQEGKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 772 ~l~~~g~~~~A~~~~~~~~~~~~~~~ 797 (808)
.|...|++++|..+++++++...+-.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~~~i~ 373 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVRQLIQ 373 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTSCS
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999987654433
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=1.6e-10 Score=116.83 Aligned_cols=184 Identities=11% Similarity=0.091 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHccCCHHHHHHHH
Q 046719 606 QKCLELYENMKKLGIKP-SLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPD-LL-VYNALIHCYAEHGDVQKALVLH 681 (808)
Q Consensus 606 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~ 681 (808)
++|..+|++.++. +.| +...|..+...+...| +++|.++|+++++. .|+ .. .|..++..+.+.|++++|.++|
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4455555554431 122 2334444444444444 55555555554442 221 11 4444444444445555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH-hcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCC-
Q 046719 682 SEMVDQGIRPDKMTYNSLIFGHL-REGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENG- 758 (808)
Q Consensus 682 ~~~~~~g~~pd~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 758 (808)
+++++.. +++...|...+.... ..|++++|..+|+++++. .| +...|..++..+.+.|++++|..+|+++++..
T Consensus 158 ~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 234 (308)
T 2ond_A 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence 5554421 112222322222211 134555555555554442 22 34444444444444555555555555554431
Q ss_pred CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 759 FIP--SFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 759 ~~~--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
..| ....|..++..+.+.|+.++|..+++++.+..|+
T Consensus 235 l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 111 2334444444444455555555555555544444
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=3.8e-11 Score=110.99 Aligned_cols=167 Identities=14% Similarity=0.086 Sum_probs=113.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 046719 553 TLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLS 632 (808)
Q Consensus 553 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 632 (808)
+..+|..+...|...|++++|++.|++.++.. +-+..+|..+..+|...|++++|+..+.....
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--------------- 67 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--------------- 67 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---------------
Confidence 45556666666666666666666666665532 22345555555555566666665555555543
Q ss_pred HHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhH
Q 046719 633 GCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSE 711 (808)
Q Consensus 633 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~ 711 (808)
.. +.+...+..+...+...++++.|...+++..+. .| +...+..++.++...|++++
T Consensus 68 -------------------~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~ 125 (184)
T 3vtx_A 68 -------------------LD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDK 125 (184)
T ss_dssp -------------------HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred -------------------cC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchh
Confidence 22 334556666677777788888888888888774 34 45577788888888888888
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 712 VKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 712 A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
|++.++++++ +.| +..+|..++.+|.+.|++++|+..|+++++.+|
T Consensus 126 A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 126 AIEAYEKTIS--IKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHH--hcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 8888888877 445 567788888888888888888888888887643
No 71
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=1.1e-11 Score=127.22 Aligned_cols=276 Identities=14% Similarity=0.042 Sum_probs=136.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC---HhhHHHHHHHHHhcCChHHHHHHHHHhhhC----CCC-CChhhHH
Q 046719 137 INVLLECLVRCNQYDRALDLFDEIVCMGFRPD---KFTYGKAVQAAVKIGDLKRACEIFDGMEKS----RTR-PNVFVYN 208 (808)
Q Consensus 137 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~ 208 (808)
+......+...|++++|...|+++++..+... ...+..+...+...|++++|...++++.+. +.. ....++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 44455566666666666666666665533311 244555556666666666666666654432 111 1234555
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------hhHHHHHHH
Q 046719 209 VLISGFCKEKKIRDAEKLFDEMCQRKL-VPT----RVTYNTLVDGYCKVGE--------------------FEKVSALRE 263 (808)
Q Consensus 209 ~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~ 263 (808)
.+...+...|++++|...|++..+... .++ ..++..+...|...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 666666666666666666665543210 011 2245555566666666 555555555
Q ss_pred HHHhC----CC-CcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhCCChHHHHHHHH
Q 046719 264 RMKRD----KV-EVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFD-PD----GFTYSMLFDGYSKCGDGEGVMALYE 333 (808)
Q Consensus 264 ~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~ 333 (808)
+.... +. ......+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44321 00 011224444555555555555555555554432000 00 1133344444444444444444444
Q ss_pred HHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--
Q 046719 334 ELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLV-PDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGL-- 410 (808)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-- 410 (808)
+...... ..+.. ....++..+...|...|++++|...+++..+...
T Consensus 248 ~al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 248 KTLLLAR-------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-------------------------------hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 4322100 00000 0133455566666666666666666666544210
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 046719 411 ---APNCITFNTLIDKFCELGEMDKAEEWVKRMLEK 443 (808)
Q Consensus 411 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 443 (808)
.....++..+...+...|++++|...+++..+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 011335566667777777777777777776654
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=1.3e-11 Score=137.83 Aligned_cols=165 Identities=15% Similarity=0.080 Sum_probs=129.9
Q ss_pred HHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 046719 624 LRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD-KMTYNSLIF 701 (808)
Q Consensus 624 ~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~ 701 (808)
..+++.+...+...| +++|.+.|++.++.. +.+...|+.+..+|.+.|++++|++.|+++++ +.|+ ...|..++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 344555555555555 566666666655542 33567788888889999999999999999888 4564 458888999
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 046719 702 GHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLK 780 (808)
Q Consensus 702 ~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 780 (808)
++...|++++|++.++++++ +.| +...|..++.+|.+.|++++|+..|+++++..|. +...+..++.+|...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 99999999999999999888 556 4778888999999999999999999999988777 7888889999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 046719 781 EAQILCSEISIVGK 794 (808)
Q Consensus 781 ~A~~~~~~~~~~~~ 794 (808)
+|.+.++++++..+
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99988888876543
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=1.2e-10 Score=122.09 Aligned_cols=233 Identities=12% Similarity=0.045 Sum_probs=129.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCCc-chhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC----CCHHHHHHH
Q 046719 492 NWLCKDCKLLEAEIVLKDMENR----GVLP-NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR--EMG----PTLVTFNAL 560 (808)
Q Consensus 492 ~~~~~~~~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~~~~l 560 (808)
..+...|++++|...|++..+. +..+ ...++..+...+...|++++|+..+++.++. ... ....+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3445556666666666555442 1111 2234555555666666666666666555442 000 012344445
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 046719 561 INGLCKKGRVMEAEDMLPQITSSGL-NPD----VITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCI 635 (808)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 635 (808)
...|...|++++|...+++..+... .++ ..++..+...|...|++++|+..|++..+.
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~----------------- 253 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV----------------- 253 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------------
Confidence 5555555555555555555443100 001 123444455555555555555555444331
Q ss_pred HcCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC---CCCC-HHHHHHHHHHHHhcCC--
Q 046719 636 REGIVAVEKLFNEMLQINL-VPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQG---IRPD-KMTYNSLIFGHLREGK-- 708 (808)
Q Consensus 636 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~pd-~~~~~~l~~~~~~~g~-- 708 (808)
..+.+. +....++..++..|.+.|++++|...+++..+.. -.|. ...+..++..+...|+
T Consensus 254 -------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 320 (383)
T 3ulq_A 254 -------------FEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE 320 (383)
T ss_dssp -------------HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHH
T ss_pred -------------HHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 000122 2234567778888888888888888888877531 0122 2245678888888888
Q ss_pred -HhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 709 -LSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 709 -~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
+++|+.++++. +..| ....+..++..|...|++++|..+++++++.
T Consensus 321 ~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 321 AIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 67777777665 2233 2445678888888889999998888888763
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.37 E-value=1.9e-11 Score=131.31 Aligned_cols=210 Identities=13% Similarity=-0.015 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 046719 536 KDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRV-MEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYEN 614 (808)
Q Consensus 536 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 614 (808)
++++..++..... .+.+...+..+...+...|++ ++|++.|++.++.. +.+...|..+...|...|++++|...|++
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444443332 122445555555555555555 55555555555432 12344555555555555555555555555
Q ss_pred HHHCCCCcCHHhHHHHHHHHHHc---------C-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--------CCHHH
Q 046719 615 MKKLGIKPSLRTYHPLLSGCIRE---------G-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEH--------GDVQK 676 (808)
Q Consensus 615 ~~~~~~~p~~~~~~~l~~~~~~~---------~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 676 (808)
..+. .|+...+..+...+... | +++|.+.++++++.. +.+...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 5543 34445555555555555 5 666666666666643 44567777788888777 88999
Q ss_pred HHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHH
Q 046719 677 ALVLHSEMVDQGIRP----DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWY 751 (808)
Q Consensus 677 A~~~~~~~~~~g~~p----d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 751 (808)
|++.|+++++. .| +...|..++.+|...|++++|.+.++++.+ +.| +...+..+..++...|++++|++.+
T Consensus 240 A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 240 ALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998883 45 556888899999999999999999999887 445 4667888888888888888888765
Q ss_pred HHH
Q 046719 752 REM 754 (808)
Q Consensus 752 ~~~ 754 (808)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 443
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=4.2e-11 Score=110.72 Aligned_cols=168 Identities=14% Similarity=0.037 Sum_probs=134.6
Q ss_pred HHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046719 627 YHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLR 705 (808)
Q Consensus 627 ~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~ 705 (808)
+..+...+...| +++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+. .+.+...+..++..+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH
Confidence 334444455555 666666666655432 345677888888899999999999999999885 23356688889999999
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 046719 706 EGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQIL 785 (808)
Q Consensus 706 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~ 785 (808)
.|++++|.++++++.+.. +.+...+..++.++...|++++|..+++++++..+. +...+..++.++...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988742 346778889999999999999999999999988766 788999999999999999999999
Q ss_pred HHHHHHcCCCCCc
Q 046719 786 CSEISIVGKDAWT 798 (808)
Q Consensus 786 ~~~~~~~~~~~~~ 798 (808)
++++++..|++..
T Consensus 167 ~~~~~~~~~~~~~ 179 (186)
T 3as5_A 167 FKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHCCCG
T ss_pred HHHHHHcCCCchh
Confidence 9999988877655
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=7.2e-11 Score=113.48 Aligned_cols=199 Identities=13% Similarity=0.009 Sum_probs=143.4
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 587 PDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALI 665 (808)
Q Consensus 587 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 665 (808)
.|+..+......+...|++++|+..|++..+...+++...+..+...+...| +++|.+.+++.++.. +.+...+..++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 3567788888888888999999999988887543266666666777777778 888888888888753 33556777888
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCC-CH-------HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC---HHHHHHH
Q 046719 666 HCYAEHGDVQKALVLHSEMVDQGIRP-DK-------MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK---ADTYNIL 734 (808)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~~~~~g~~p-d~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l 734 (808)
.+|...|++++|++.+++.++. .| +. ..|..++..+...|++++|++.++++++ +.|+ ...|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHH
Confidence 8888888888888888888873 34 33 3477777888888888888888888877 4554 4566777
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 735 VKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 735 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+.++...| ...++++...+.. +...+... .....|.+++|+..++++++..|++..
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLASS-NKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHH-----HHHHHHHHhcccC-CHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 77775543 3445555555433 33333332 334456679999999999999998876
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=2.4e-11 Score=123.29 Aligned_cols=168 Identities=15% Similarity=0.109 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhC------C-C
Q 046719 135 DSINVLLECLVRCNQYDRALDLFDEIVCM-------GFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKS------R-T 200 (808)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~ 200 (808)
.++..++..+...|++++|..+|+++.+. ........+..+...+...|++++|...|+++.+. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555555555555555555555555442 11123344455555555555555555555554432 1 1
Q ss_pred CCChhhHHHHHHHHHccCCHhHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----
Q 046719 201 RPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQR------KL-VPTRVTYNTLVDGYCKVGEFEKVSALRERMKRD----- 268 (808)
Q Consensus 201 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----- 268 (808)
.....++..+...|...|++++|...|+++.+. +. .....++..+...|...|++++|...++++...
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 112344555555666666666666666555432 11 112334555555566666666666666555442
Q ss_pred -CCCc-CHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 269 -KVEV-SLVMFNSLLGGFCKAKRMEEAKSVCKEMEA 302 (808)
Q Consensus 269 -~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 302 (808)
+..| ...++..+...|...|++++|...|+++.+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 223445555555555555555555555543
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=4.1e-10 Score=117.66 Aligned_cols=226 Identities=7% Similarity=-0.012 Sum_probs=147.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--C---Cc-CHHhHHHHH
Q 046719 563 GLCKKGRVMEAEDMLPQITSSGL-NPD----VITYNSLISGYSSLGSSQKCLELYENMKKLG--I---KP-SLRTYHPLL 631 (808)
Q Consensus 563 ~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~---~p-~~~~~~~l~ 631 (808)
.+...|++++|...|++..+... .++ ..++..+...|...|++++|+..+++..+.. . .+ ...++..+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34555666666666666554210 011 2345555666666666666666666555320 0 11 123445555
Q ss_pred HHHHHcC-HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 046719 632 SGCIREG-IVAVEKLFNEMLQI----NLVP-DLLVYNALIHCYAEHGDVQKALVLHSEMVD-----QGIRPDKMTYNSLI 700 (808)
Q Consensus 632 ~~~~~~~-~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~pd~~~~~~l~ 700 (808)
..+...| +++|.+.+++.++. +..+ ...+++.++.+|...|++++|++.+++.++ . .+....++..++
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV-PDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHHH
Confidence 5566666 66666666665542 1111 135677888999999999999999999887 3 222345788999
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHccCC---hhHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 046719 701 FGHLREGKLSEVKELVNDMKVKGL---IPK-ADTYNILVKGYCNLKD---FGGAYIWYREMFENGFIP-SFCIYNELTNG 772 (808)
Q Consensus 701 ~~~~~~g~~~~A~~~~~~~~~~g~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 772 (808)
..+.+.|++++|..++++..+... .|. ...+..+...+...|+ +++|+.++++. +..| ....+..++..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHH
Confidence 999999999999999999876321 122 3445677777778888 78888887763 2222 34567789999
Q ss_pred HHhcCChhHHHHHHHHHHHc
Q 046719 773 LKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 773 l~~~g~~~~A~~~~~~~~~~ 792 (808)
|...|++++|..+++++++.
T Consensus 346 y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=1.1e-09 Score=114.37 Aligned_cols=299 Identities=9% Similarity=-0.004 Sum_probs=185.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchh----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHHH
Q 046719 488 GSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQ----IYNMLIDGSCTMGRIKDAFKFFDEMVKREM-GPTL----VTFN 558 (808)
Q Consensus 488 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~ 558 (808)
......+...|++++|...+++........+.. ++..+...+...|++++|...+++...... ..+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455667888888988888877653222221 456666777888888888888888765311 1122 2355
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC--c--CHHhH
Q 046719 559 ALINGLCKKGRVMEAEDMLPQITSS----GLN--PD-VITYNSLISGYSSLGSSQKCLELYENMKKLGIK--P--SLRTY 627 (808)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p--~~~~~ 627 (808)
.+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6677788888888888888887652 211 22 345666777788888888888888887754211 1 12345
Q ss_pred HHHHHHHHHcC-HHHHHHHHHHHHHCCCCC-C-HHHHH----HHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHH
Q 046719 628 HPLLSGCIREG-IVAVEKLFNEMLQINLVP-D-LLVYN----ALIHCYAEHGDVQKALVLHSEMVDQGIRPD---KMTYN 697 (808)
Q Consensus 628 ~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~-~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd---~~~~~ 697 (808)
..+...+...| +++|...+++.......+ . ..... ..+..+...|++++|...+++..+....+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 55666667777 888888887776531111 1 11111 233446677888888888877765321111 12456
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKVK----GLIPKA-DTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNG 772 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 772 (808)
.++..+...|++++|...++++.+. |..++. ..+..++.++...|++++|...++++++.... ......
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~------~g~~~~ 331 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR------TGFISH 331 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------HCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc------ccHHHH
Confidence 6777778888888888888776542 211122 25556677777788888888888887765321 112334
Q ss_pred HHhcCChhHHHHHHHHHHHcCC
Q 046719 773 LKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 773 l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
+...| +....++++.....+
T Consensus 332 ~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 332 FVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHcc--HHHHHHHHHHHhCCC
Confidence 44555 566777777777665
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=3.8e-10 Score=108.40 Aligned_cols=208 Identities=11% Similarity=-0.025 Sum_probs=163.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 046719 552 PTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLL 631 (808)
Q Consensus 552 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 631 (808)
.++..+......+...|++++|...|++.++....++...+..+..++...|++++|+..|++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46788888999999999999999999999986543677788789999999999999999999999853 23466788888
Q ss_pred HHHHHcC-HHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--H-HHHHHHH
Q 046719 632 SGCIREG-IVAVEKLFNEMLQINLVPDL-------LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD--K-MTYNSLI 700 (808)
Q Consensus 632 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd--~-~~~~~l~ 700 (808)
..+...| +++|.+.+++.++.. +.+. ..|..+...+...|++++|++.|+++++ +.|+ . ..+..++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 8899999 999999999999864 3344 4588888999999999999999999998 5676 3 4788888
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 701 FGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNG 772 (808)
Q Consensus 701 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 772 (808)
.++...| ..+++++...+ ..+...+.... ....+.+++|+.+++++++..|. +..+...+...
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHH
Confidence 8887654 44556666542 23344443333 34567899999999999998776 66666655544
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.27 E-value=1.1e-09 Score=114.10 Aligned_cols=160 Identities=11% Similarity=-0.003 Sum_probs=66.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcCHh----hHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-CC----hhhHHHHHH
Q 046719 142 ECLVRCNQYDRALDLFDEIVCMGFRPDKF----TYGKAVQAAVKIGDLKRACEIFDGMEKSRTR-PN----VFVYNVLIS 212 (808)
Q Consensus 142 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~ 212 (808)
..+...|++++|...+++++......+.. +++.+...+...|++++|...+++....... .+ ..+++.+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 33444455555555555544432222211 2333334444455555555555444331000 01 112334444
Q ss_pred HHHccCCHhHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----cCHHHHHHHH
Q 046719 213 GFCKEKKIRDAEKLFDEMCQR----KLV--P-TRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVE----VSLVMFNSLL 281 (808)
Q Consensus 213 ~~~~~g~~~~A~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li 281 (808)
.+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... ....++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 455555555555555544331 110 1 1223334444555555555555555554432111 1123344444
Q ss_pred HHHHccCChhHHHHHHHHHH
Q 046719 282 GGFCKAKRMEEAKSVCKEME 301 (808)
Q Consensus 282 ~~~~~~g~~~~A~~~~~~m~ 301 (808)
..+...|++++|...+++..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555555543
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.27 E-value=6e-10 Score=116.38 Aligned_cols=229 Identities=12% Similarity=0.015 Sum_probs=151.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--C---CC-CHHHHHH
Q 046719 526 IDGSCTMGRIKDAFKFFDEMVKRE-MGP----TLVTFNALINGLCKKGRVMEAEDMLPQITSSG--L---NP-DVITYNS 594 (808)
Q Consensus 526 i~~~~~~g~~~~A~~~~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~---~~-~~~~~~~ 594 (808)
...+...|++++|+..|+++.+.. ..+ ...++..+...|...|++++|...+++..+.. . .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 344556677777777777665431 011 13456666667777777777777777665410 0 11 1345666
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHC----CCCc-CHHhHHHHHHHHHHcC-HHHHHHHHHHHHHC----CCCCCHHHHHHH
Q 046719 595 LISGYSSLGSSQKCLELYENMKKL----GIKP-SLRTYHPLLSGCIREG-IVAVEKLFNEMLQI----NLVPDLLVYNAL 664 (808)
Q Consensus 595 l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~----~~~~~~~~~~~l 664 (808)
+...|...|++++|.+.|++..+. +..+ ...++..+...+...| +++|.+.+++.++. +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 777777777777777777766642 1111 1234556666677777 77787777777651 223336678889
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HhHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 046719 665 IHCYAEHGDVQKALVLHSEMVDQGI---RPD-KMTYNSLIFGHLREGK---LSEVKELVNDMKVKGLIPK-ADTYNILVK 736 (808)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~~~~~g~---~pd-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l~~ 736 (808)
+.+|.+.|++++|...+++..+... .|. ...+..+...+...|+ +.+|+.++++. +..|+ ...+..++.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHH
Confidence 9999999999999999999987421 122 2356677778888888 77777777762 22232 455678999
Q ss_pred HHHccCChhHHHHHHHHHHHC
Q 046719 737 GYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 737 ~~~~~g~~~~A~~~~~~~~~~ 757 (808)
.|...|++++|..+++++++.
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999998753
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.23 E-value=2.9e-10 Score=126.87 Aligned_cols=162 Identities=18% Similarity=0.146 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 590 ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCY 668 (808)
Q Consensus 590 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 668 (808)
.+|+.|...|.+.|++++|++.|++.++.. +-+..++..+...+.+.| +++|.+.|++.++.+ +.+...|+.+..+|
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 445555555555555555555555555431 122445555555555555 555555555555542 34567888888889
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhH
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGG 746 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 746 (808)
.+.|++++|++.|+++++ +.|+ ...|+.++.+|...|++++|++.++++++ +.| +...+..++.++...|++++
T Consensus 88 ~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999988 4564 45888999999999999999999999888 556 46778889999999999999
Q ss_pred HHHHHHHHHHC
Q 046719 747 AYIWYREMFEN 757 (808)
Q Consensus 747 A~~~~~~~~~~ 757 (808)
|.+.++++++.
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99888888753
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.20 E-value=3.8e-09 Score=102.74 Aligned_cols=184 Identities=10% Similarity=-0.022 Sum_probs=120.0
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 046719 608 CLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINL-VPDLLVYNALIHCYAEHGDVQKALVLHSEMV 685 (808)
Q Consensus 608 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 685 (808)
|+..|++....+ .++..++..+..++...| +++|.+++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666665543 344555555666666667 7777777777766542 1345666777788888888888888888887
Q ss_pred HCCCCCC-----HHHHHHHHHH--HHhcC--CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 686 DQGIRPD-----KMTYNSLIFG--HLREG--KLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 686 ~~g~~pd-----~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
+ ..|| ..+...|+.+ ....| ++.+|..+|+++.+ -.|+..+...+..++.+.|++++|.+.++.+.+
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7 4562 3333344433 44444 78888888888766 345533333444477788888888888886665
Q ss_pred C----------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCch
Q 046719 757 N----------GFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWTN 799 (808)
Q Consensus 757 ~----------~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~ 799 (808)
. ++. ++.++..++.+....|+ +|.++++++.+..|++.-.
T Consensus 240 ~~p~~~~k~~~~p~-~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 240 DYYSVEQKENAVLY-KPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHTTTCHHHHSS-HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred hcccccccccCCCC-CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 3 233 56666666666666676 7888888888888877653
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=2.7e-10 Score=113.56 Aligned_cols=227 Identities=15% Similarity=0.091 Sum_probs=156.8
Q ss_pred HhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCc-CHHhHHHH
Q 046719 565 CKKGRVMEAEDMLPQITSS-------GLNPDVITYNSLISGYSSLGSSQKCLELYENMKKL------GIKP-SLRTYHPL 630 (808)
Q Consensus 565 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l 630 (808)
...|++++|+.++++..+. ..+....++..+...|...|++++|+..++++.+. +..| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776541 11223567888999999999999999999998864 2222 35567778
Q ss_pred HHHHHHcC-HHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC------CCCCC-HHH
Q 046719 631 LSGCIREG-IVAVEKLFNEMLQI------NL-VPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQ------GIRPD-KMT 695 (808)
Q Consensus 631 ~~~~~~~~-~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~pd-~~~ 695 (808)
...+...| +++|.+.++++++. .. +.....+..++..|...|++++|+..++++++. +-.|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888888 99999999988764 11 223567888889999999999999999999874 11343 347
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHccCChhHHHH------HHHHHHHCCCCC
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVK-------GLIP-KADTYNILVKGYCNLKDFGGAYI------WYREMFENGFIP 761 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~p-~~~~~~~l~~~~~~~g~~~~A~~------~~~~~~~~~~~~ 761 (808)
+..++.++...|++++|..+++++.+. ...+ ....|..+.......+....+.. +++.... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999998752 1122 23344444444444444333332 2222111 1111
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046719 762 SFCIYNELTNGLKQEGKLKEAQILCSEISIV 792 (808)
Q Consensus 762 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 792 (808)
....+..++.+|...|++++|..+++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567889999999999999999999998764
No 86
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.20 E-value=7.2e-10 Score=102.30 Aligned_cols=164 Identities=11% Similarity=-0.010 Sum_probs=109.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 046719 593 NSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEH 671 (808)
Q Consensus 593 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 671 (808)
..+...+...|++++|...++++.+. .+.+...+..+...+...| +++|.+.++++++.. +.+...+..++..+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 33344444444444444444444332 1223334444444444444 555555555554432 34566777788888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 046719 672 GDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWY 751 (808)
Q Consensus 672 g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 751 (808)
|++++|.+.++++.+. .+.+...+..++..+...|++++|..+++++.+.. +.+...+..++.++...|++++|..++
T Consensus 90 ~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999988875 23456678888889999999999999999988742 335778888899999999999999999
Q ss_pred HHHHHCCCC
Q 046719 752 REMFENGFI 760 (808)
Q Consensus 752 ~~~~~~~~~ 760 (808)
+++++..+.
T Consensus 168 ~~~~~~~~~ 176 (186)
T 3as5_A 168 KKANELDEG 176 (186)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHcCCC
Confidence 998876544
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.19 E-value=9.4e-10 Score=95.30 Aligned_cols=133 Identities=17% Similarity=0.192 Sum_probs=115.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYC 739 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 739 (808)
.+..++..+...|++++|+.+++++.+.. +.+...+..++..+...|++++|..+++++.+.+ +.+...+..++.++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46778888999999999999999998852 3356688889999999999999999999998743 335778889999999
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 740 NLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 740 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
..|++++|..+++++.+..+. +...+..++.++...|++++|...+++++...|+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999999988765 7888999999999999999999999999988775
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.16 E-value=6.8e-11 Score=104.65 Aligned_cols=125 Identities=9% Similarity=-0.072 Sum_probs=61.9
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChh
Q 046719 668 YAEHGDVQKALVLHSEMVDQGIRPDK-MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFG 745 (808)
Q Consensus 668 ~~~~g~~~~A~~~~~~~~~~g~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~ 745 (808)
+...|++++|+..+++... ..|+. ..+..++..|.+.|++++|++.++++++ +.| +..+|..++.++.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCchH
Confidence 3344455555555555443 22322 2344455555555555555555555554 333 3444555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH-HHHHHHcCCCCC
Q 046719 746 GAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQIL-CSEISIVGKDAW 797 (808)
Q Consensus 746 ~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~-~~~~~~~~~~~~ 797 (808)
+|+..|+++++.+|. ++..+..++.+|.+.|++++|.+. ++++++..|++.
T Consensus 83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~ 134 (150)
T 4ga2_A 83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP 134 (150)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence 555555555555444 455555555555555555443332 355555555443
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=6.5e-10 Score=111.15 Aligned_cols=214 Identities=12% Similarity=-0.003 Sum_probs=126.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCCHHHH
Q 046719 534 RIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSS----GLNPD-VITYNSLISGYSSLGSSQKC 608 (808)
Q Consensus 534 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A 608 (808)
++++|...|++. ...|...|++++|...|.+..+. |-.++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 55666777777777777766542 21111 34566666667777777777
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc-CCHHHHHHHHHHHHH
Q 046719 609 LELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVP-DLLVYNALIHCYAEH-GDVQKALVLHSEMVD 686 (808)
Q Consensus 609 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 686 (808)
+..|++..+.. .. .|-.. -..+++.+..+|... |++++|+..|++.++
T Consensus 97 ~~~~~~Al~l~---------------~~---------------~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 97 VDSLENAIQIF---------------TH---------------RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHHHHHH---------------HH---------------TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------HH---------------cCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 77666665420 00 01000 123566677777775 888888888887776
Q ss_pred CCCCCC-------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHccCChhHHHHHHHH
Q 046719 687 QGIRPD-------KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKA------DTYNILVKGYCNLKDFGGAYIWYRE 753 (808)
Q Consensus 687 ~g~~pd-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 753 (808)
. .|+ ..+++.++..+...|++++|+..++++.+....... ..|..++.++...|++++|+..+++
T Consensus 147 ~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 147 W--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp H--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred H--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 221 235677778888888888888888887763221111 1456677777778888888888888
Q ss_pred HHHCCCCCC----HHHHHHHHHHHH--hcCChhHHHHHHHHHHHcCC
Q 046719 754 MFENGFIPS----FCIYNELTNGLK--QEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 754 ~~~~~~~~~----~~~~~~l~~~l~--~~g~~~~A~~~~~~~~~~~~ 794 (808)
+++..|.-. ...+..++..+. ..+++++|+..+++++...|
T Consensus 225 al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 225 GQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp GGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 776543211 112334445443 45667777777777655443
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.12 E-value=6e-10 Score=104.98 Aligned_cols=183 Identities=9% Similarity=-0.001 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHH-hHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 590 ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLR-TYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCY 668 (808)
Q Consensus 590 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 668 (808)
..+......+...|++++|+..|++..+. .|+.. .+.. . ... ..........+.+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~----~~~-------------~~~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T----NVD-------------KNSEISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H----HSC-------------TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h----hhc-------------chhhhhHHHHHHHHHHH
Confidence 34444555667788888888888888763 34322 2221 0 000 00001122334477778
Q ss_pred HccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCC--h
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKD--F 744 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~--~ 744 (808)
.+.|++++|+..|++.++. .| +...+..++.++...|++++|+..++++++ +.| +...|..++.+|...|+ .
T Consensus 65 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHH
Confidence 8888888888888888873 45 455788888888888888888888888877 455 46777788877766553 4
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 745 GGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 745 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+.+...++++. .+.|....+..++.++...|++++|+..++++++..|+...
T Consensus 141 ~~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 192 (208)
T 3urz_A 141 KKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEA 192 (208)
T ss_dssp HHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHH
T ss_pred HHHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHH
Confidence 45555665554 23333345566677777788888888888888888876443
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=2.7e-09 Score=104.88 Aligned_cols=136 Identities=9% Similarity=-0.048 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---C-HHHHHHHHHHHHh--------cCCHhHHHHHHHHHHHCCCCC
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP---D-KMTYNSLIFGHLR--------EGKLSEVKELVNDMKVKGLIP 726 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---d-~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~g~~p 726 (808)
..+..++.+|.+.|++++|+..|+++++. .| + ...+..++.++.. .|++++|+..++++++. .|
T Consensus 53 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p 128 (261)
T 3qky_A 53 DAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YP 128 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--Cc
Confidence 34444444555555555555555555542 12 1 1234444455544 55555555555555442 22
Q ss_pred C-HHH-----------------HHHHHHHHHccCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------
Q 046719 727 K-ADT-----------------YNILVKGYCNLKDFGGAYIWYREMFENGFIP--SFCIYNELTNGLKQE---------- 776 (808)
Q Consensus 727 ~-~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~---------- 776 (808)
+ ... +..++.+|.+.|++++|+..|+++++..|.. ....+..++.+|...
T Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~ 208 (261)
T 3qky_A 129 NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQP 208 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhccc
Confidence 2 111 2567888888999999999999988876543 246788888888866
Q ss_pred CChhHHHHHHHHHHHcCCCCCc
Q 046719 777 GKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 777 g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
|++++|...++++++..|++..
T Consensus 209 ~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 209 ERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHHHHHHHCTTCTH
T ss_pred chHHHHHHHHHHHHHHCCCChH
Confidence 8889999999999998888764
No 92
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=1.1e-09 Score=109.02 Aligned_cols=228 Identities=17% Similarity=0.128 Sum_probs=161.1
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHHHH
Q 046719 530 CTMGRIKDAFKFFDEMVKR-------EMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSS------GLNP-DVITYNSL 595 (808)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~l 595 (808)
...|++++|+..|++.++. ..+....++..+...|...|++++|...++++.+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777777652 22234667888999999999999999999998763 2122 34678899
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHC------CC-CcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHC------CCCC-CHHH
Q 046719 596 ISGYSSLGSSQKCLELYENMKKL------GI-KPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQI------NLVP-DLLV 660 (808)
Q Consensus 596 ~~~~~~~g~~~~A~~~~~~~~~~------~~-~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~~~ 660 (808)
...|...|++++|...|++..+. .. +....++..+...+...| +++|.+.++++++. ...| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998864 11 223566777888889999 99999999999874 1123 3567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC-------CCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHH--HC-C-CCC-C
Q 046719 661 YNALIHCYAEHGDVQKALVLHSEMVDQ-------GIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMK--VK-G-LIP-K 727 (808)
Q Consensus 661 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-g-~~p-~ 727 (808)
+..++.+|...|++++|...++++.+. ...+... .|..+.......+....+..+..... +. + ..| .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999999863 1223322 45455555554444333332221111 11 1 112 2
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 728 ADTYNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 728 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
..++..++.+|...|++++|..+++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456889999999999999999999998863
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=8.7e-10 Score=110.20 Aligned_cols=162 Identities=7% Similarity=-0.102 Sum_probs=119.6
Q ss_pred HHcC-HHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHH
Q 046719 635 IREG-IVAVEKLFNEMLQI----NLVPD-LLVYNALIHCYAEHGDVQKALVLHSEMVDQ----GIRPD-KMTYNSLIFGH 703 (808)
Q Consensus 635 ~~~~-~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~pd-~~~~~~l~~~~ 703 (808)
...| +++|.+.|.+.++. +.+++ ..+|+.+..+|.+.|++++|+..+++.++. |-... ..+++.++.+|
T Consensus 48 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~ 127 (292)
T 1qqe_A 48 RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEIL 127 (292)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3444 55555555544432 21111 457888999999999999999999998863 11111 24788999999
Q ss_pred Hhc-CCHhHHHHHHHHHHHCCCCC---C----HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH------HHHHHH
Q 046719 704 LRE-GKLSEVKELVNDMKVKGLIP---K----ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSF------CIYNEL 769 (808)
Q Consensus 704 ~~~-g~~~~A~~~~~~~~~~g~~p---~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l 769 (808)
... |++++|+..++++++ +.| + ..++..++.++.+.|++++|+..++++++..+.... ..+..+
T Consensus 128 ~~~lg~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 128 ENDLHDYAKAIDCYELAGE--WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHTTCCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHH--HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 996 999999999999876 322 1 356889999999999999999999999997665332 157889
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 770 TNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 770 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+.++...|++++|...+++.++..|+...
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 99999999999999999999998887554
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.10 E-value=3.2e-10 Score=100.28 Aligned_cols=133 Identities=13% Similarity=-0.018 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHH
Q 046719 639 IVAVEKLFNEMLQINLVP-DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELV 716 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~ 716 (808)
+++|.+.+.+.... .| +...+..+...|.+.|++++|++.|+++++ +.| +..+|..++.++...|++++|+..+
T Consensus 13 ~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 13 VERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 66666666666542 23 345667788999999999999999999999 456 5569999999999999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 717 NDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIW-YREMFENGFIPSFCIYNELTNGLKQEGK 778 (808)
Q Consensus 717 ~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 778 (808)
+++++ +.| +...|..++.+|.+.|++++|.+. ++++++..|. ++.++......+...|+
T Consensus 89 ~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 89 RRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 99998 566 578899999999999999887765 6899998877 88899888888888885
No 95
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.08 E-value=2.1e-07 Score=99.58 Aligned_cols=104 Identities=10% Similarity=0.067 Sum_probs=55.3
Q ss_pred HcC-CHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCC-HhHH
Q 046719 146 RCN-QYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKK-IRDA 223 (808)
Q Consensus 146 ~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 223 (808)
+.| +++.|+.+|++++.. -|. |+++.+..+|++.+.. .|++..|...+.-..+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 366777777776653 111 6777777777777663 3577777776666655542 3445
Q ss_pred HHHHHHHHhC-CCC-CCHHHHHHHHHHHH----hcCChhHHHHHHHHHHh
Q 046719 224 EKLFDEMCQR-KLV-PTRVTYNTLVDGYC----KVGEFEKVSALRERMKR 267 (808)
Q Consensus 224 ~~~~~~m~~~-~~~-p~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~ 267 (808)
..+|+..+.. |.. .+...|...+..+. .+|+.+.+..+|++.+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 5566655542 322 24455555555433 23455556666666654
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.08 E-value=6.5e-09 Score=99.29 Aligned_cols=190 Identities=10% Similarity=0.012 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-cC-HHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCC-CH-HHHHH
Q 046719 589 VITYNSLISGYSSLGSSQKCLELYENMKKLGIK-PS-LRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVP-DL-LVYNA 663 (808)
Q Consensus 589 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~-~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~-~~-~~~~~ 663 (808)
...+..+...+...|++++|+..|+++.+.... |. ...+..+...+...| +++|.+.|+++++..... .. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555566677777777777777777753211 11 234555556666666 666777776666643111 11 13333
Q ss_pred HHHHHHc------------------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 046719 664 LIHCYAE------------------HGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGL 724 (808)
Q Consensus 664 l~~~~~~------------------~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 724 (808)
+..++.. .|++++|+..|+++++. .|+.. .+..+.... .+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----------HHHHHH-----
Confidence 3444432 34455555555555542 23222 111111000 000000
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 725 IPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPS--FCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 725 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
......++..+.+.|++++|+..|+++++..|... ...+..++.++.+.|++++|...++.+...+|+...
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 01123567888999999999999999999866522 367899999999999999999999999999988766
No 97
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.07 E-value=1.6e-09 Score=92.24 Aligned_cols=107 Identities=14% Similarity=-0.004 Sum_probs=70.7
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHH
Q 046719 689 IRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIY 766 (808)
Q Consensus 689 ~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 766 (808)
+.|+.. .+...+..+.+.|++++|++.|+++++ +.| +...|..++.++.+.|++++|+..++++++.++. +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHH
Confidence 445433 566666677777777777777777666 334 4566666677777777777777777777766655 66667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 767 NELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 767 ~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
..++.++...|++++|+..++++++..|++..
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHH
Confidence 77777777777777777777777776666544
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.06 E-value=2.2e-09 Score=120.76 Aligned_cols=144 Identities=11% Similarity=-0.067 Sum_probs=72.5
Q ss_pred HHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 046719 627 YHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHL 704 (808)
Q Consensus 627 ~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~ 704 (808)
+..+...+...| +++|.+.|+++++.+ +.+...|..+..+|...|++++|++.|+++++ +.| +...|..++.++.
T Consensus 436 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~ 512 (681)
T 2pzi_A 436 PLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLD--TFPGELAPKLALAATAE 512 (681)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHH
Confidence 333333344444 444444444444432 23344555555555555666666666655555 233 2335555555555
Q ss_pred hcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 705 REGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG 777 (808)
Q Consensus 705 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 777 (808)
+.|++++ ++.++++++ +.| +...|..++.++.+.|++++|+..|+++++.++. +...+..++.++...|
T Consensus 513 ~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 513 LAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH-FTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC---
T ss_pred HcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc-cHHHHHHHHHHHHccC
Confidence 5666555 555555555 233 3445555555555566666666666555554433 4455555555554433
No 99
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.05 E-value=1.1e-09 Score=96.18 Aligned_cols=105 Identities=15% Similarity=0.058 Sum_probs=79.7
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHH
Q 046719 689 IRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIY 766 (808)
Q Consensus 689 ~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 766 (808)
+.|+.. .+..++..+.+.|++++|+..|+++++ +.| ++..|..++.++...|++++|+..|+++++..|. ++..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHH
Confidence 345433 677777888888888888888888777 445 5677778888888888888888888888877766 67777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 046719 767 NELTNGLKQEGKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 767 ~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 796 (808)
..++.+|.+.|++++|+..++++++..|+.
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 888888888888888888888888777654
No 100
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=9.7e-09 Score=100.80 Aligned_cols=208 Identities=11% Similarity=0.000 Sum_probs=128.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CcC-HHh
Q 046719 552 PTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPD---VITYNSLISGYSSLGSSQKCLELYENMKKLGI-KPS-LRT 626 (808)
Q Consensus 552 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~ 626 (808)
.+...+..+...+.+.|++++|+..|+++++... .+ ...+..+..+|...|++++|+..|++..+... .|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3566677777778888888888888888877531 12 45677777788888888888888888876421 111 233
Q ss_pred HHHHHHHHHH--------cC-HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 046719 627 YHPLLSGCIR--------EG-IVAVEKLFNEMLQINLVPD-LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTY 696 (808)
Q Consensus 627 ~~~l~~~~~~--------~~-~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~ 696 (808)
+..+...+.. .| +++|.+.|+++++.. |+ ......+ ..+..+... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH----HHHHH
Confidence 4444444444 45 556666665555532 21 1111111 111111000 00123
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHcc----------CChhHHHHHHHHHHHCCCCCC
Q 046719 697 NSLIFGHLREGKLSEVKELVNDMKVKGLIPK----ADTYNILVKGYCNL----------KDFGGAYIWYREMFENGFIPS 762 (808)
Q Consensus 697 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~ 762 (808)
..++..|...|++++|+..++++++. .|+ ...+..++.+|... |++++|+..++++++..|...
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 67788999999999999999998873 343 45678888888866 889999999999998766522
Q ss_pred --HHHHHHHHHHHHhcCChhHH
Q 046719 763 --FCIYNELTNGLKQEGKLKEA 782 (808)
Q Consensus 763 --~~~~~~l~~~l~~~g~~~~A 782 (808)
......+..++.+.|+.+++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 23444555555555554443
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.03 E-value=2.4e-07 Score=99.13 Aligned_cols=101 Identities=11% Similarity=0.063 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCC-hHHHHHHHH
Q 046719 115 PSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGD-LKRACEIFD 193 (808)
Q Consensus 115 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~ 193 (808)
...|+.+|++....- |. |+++.+..+|++.+.. .|++..|..-+.-..+.+. .+....+|+
T Consensus 11 i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 11 LSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred hHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 666666666665421 11 7888888888888773 4578888887777666653 355667777
Q ss_pred HhhhC-CCC-CChhhHHHHHHHHH----ccCCHhHHHHHHHHHHhC
Q 046719 194 GMEKS-RTR-PNVFVYNVLISGFC----KEKKIRDAEKLFDEMCQR 233 (808)
Q Consensus 194 ~~~~~-~~~-~~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~ 233 (808)
.++.. |.. .+...|...+..+. ..|+++.+.++|++.+..
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 76653 432 35667777776543 245677888888888764
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.01 E-value=6e-09 Score=115.27 Aligned_cols=151 Identities=13% Similarity=0.019 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 046719 603 GSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLH 681 (808)
Q Consensus 603 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 681 (808)
|++++|.+.|++..+.. +.+...+..+...+...| +++|.+.+++.++.. +.+...+..+..+|...|++++|++.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45555555555555421 122344444444444444 555555555555432 223444444555555555555555555
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc---CChhHHHHHHHHHHH
Q 046719 682 SEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNL---KDFGGAYIWYREMFE 756 (808)
Q Consensus 682 ~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 756 (808)
++.++. .| +...+..++.++...|++++|.+.++++.+. .| +...+..++.++... |++++|...++++++
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 555442 22 2334445555555555555555555554442 22 234444455555555 555555555555554
Q ss_pred CCC
Q 046719 757 NGF 759 (808)
Q Consensus 757 ~~~ 759 (808)
.++
T Consensus 157 ~~p 159 (568)
T 2vsy_A 157 QGV 159 (568)
T ss_dssp HTC
T ss_pred cCC
Confidence 443
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.01 E-value=1e-07 Score=93.97 Aligned_cols=213 Identities=12% Similarity=0.032 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH----HHc---C-H
Q 046719 571 MEAEDMLPQITSSGLNP-DVITYNSLISGYSSLG--SSQKCLELYENMKKLGIKPSLRTYHPLLSGC----IRE---G-I 639 (808)
Q Consensus 571 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~---~-~ 639 (808)
++|+..++.++.. .| +...|+.-...+...+ ++++++.+++.+.... +-+..+|+.-...+ ... + +
T Consensus 50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 4555555555543 22 2334554444444555 5555555555555432 22233333322222 222 3 5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HhH
Q 046719 640 VAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQ--KALVLHSEMVDQGIRPDKMTYNSLIFGHLREGK------LSE 711 (808)
Q Consensus 640 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~------~~~ 711 (808)
+++.++++++++.+ +.+...|+.-..++.+.|.++ ++++.++++++.. +-|...|+.-...+...|. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 56666666666543 445666666666666666666 7777777777642 2255566666666666665 677
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhH-HHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 046719 712 VKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGG-AYIWYREMFENG---FIPSFCIYNELTNGLKQEGKLKEAQILC 786 (808)
Q Consensus 712 A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~---~~~~~~~~~~l~~~l~~~g~~~~A~~~~ 786 (808)
+++++++++.. .| |...|+.+...+.+.|+..+ +..+.+++.+.+ +. ++..+..++.++.+.|+.++|.+++
T Consensus 205 El~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 205 ELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT-SSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 77777777663 34 56667777777766666443 444555555433 23 5666777777777777777777777
Q ss_pred HHHHH
Q 046719 787 SEISI 791 (808)
Q Consensus 787 ~~~~~ 791 (808)
+++.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77765
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=2.6e-09 Score=97.51 Aligned_cols=157 Identities=10% Similarity=-0.036 Sum_probs=115.3
Q ss_pred HHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcC
Q 046719 630 LLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFG-HLREG 707 (808)
Q Consensus 630 l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~-~~~~g 707 (808)
....+...| +++|...|++.++.. +.+...+..+..++...|++++|+..++++.+. .|+...+..+... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhc
Confidence 344455555 666666666655532 445677888888899999999999999988763 4444333333322 22333
Q ss_pred CHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 046719 708 KLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP-SFCIYNELTNGLKQEGKLKEAQIL 785 (808)
Q Consensus 708 ~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~g~~~~A~~~ 785 (808)
...+|+..++++++ ..| +...+..++.++...|++++|...|+++++..|.+ +...+..++.++...|+.++|...
T Consensus 89 ~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 89 AESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp TSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred ccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 44567888999887 456 57888899999999999999999999999887654 466888999999999999999999
Q ss_pred HHHHHH
Q 046719 786 CSEISI 791 (808)
Q Consensus 786 ~~~~~~ 791 (808)
+++.+.
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 105
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.01 E-value=9.3e-08 Score=93.01 Aligned_cols=186 Identities=9% Similarity=-0.006 Sum_probs=89.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 046719 538 AFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGL-NPDVITYNSLISGYSSLGSSQKCLELYENMK 616 (808)
Q Consensus 538 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 616 (808)
|+..|++.+..+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555554432 23344444555555555666666666555544332 1133445555555555556555555555555
Q ss_pred HCCCCc-----CHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 046719 617 KLGIKP-----SLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP 691 (808)
Q Consensus 617 ~~~~~p-----~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 691 (808)
+. .| +..+...+..+ .+......+++.+|..+|+++.+. .|
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea------------------------------~v~l~~g~~~~q~A~~~f~El~~~--~p 209 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAES------------------------------YIKFATNKETATSNFYYYEELSQT--FP 209 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHH------------------------------HHHHHHTCSTTTHHHHHHHHHHTT--SC
T ss_pred hc--CccccccchHHHHHHHHH------------------------------HHHHHhCCccHHHHHHHHHHHHHh--CC
Confidence 42 23 12222222222 111111223666666666666553 34
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-----CC---CC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVK-----GL---IP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+..+-..+..++.+.|++++|.+.++.+.+. .. .| |+.+...++.+....|+ +|.++++++.+..|.
T Consensus 210 ~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 210 TWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 4222223333566666666666666654431 00 13 34455444444445555 666666666665444
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.01 E-value=4.8e-08 Score=92.07 Aligned_cols=175 Identities=14% Similarity=-0.001 Sum_probs=125.6
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHH
Q 046719 608 CLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHG----DVQKALVLHS 682 (808)
Q Consensus 608 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 682 (808)
|++.|++..+. -+...+..+...+...+ +++|.+.|++..+.| +...+..|...|.. | ++++|++.|+
T Consensus 5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 44555555543 24445555555555555 666666666666543 45566667777776 6 8999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHc----cCChhHHHHHHHH
Q 046719 683 EMVDQGIRPDKMTYNSLIFGHLR----EGKLSEVKELVNDMKVKGLI-PKADTYNILVKGYCN----LKDFGGAYIWYRE 753 (808)
Q Consensus 683 ~~~~~g~~pd~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 753 (808)
+..+.| +...+..|+..|.. .+++++|+.++++..+.|.. .++..+..|+..|.. .+++++|+.+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 998754 56677888888887 78899999999998875421 026778888888888 7889999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHHcCC
Q 046719 754 MFENGFIPSFCIYNELTNGLKQE-G-----KLKEAQILCSEISIVGK 794 (808)
Q Consensus 754 ~~~~~~~~~~~~~~~l~~~l~~~-g-----~~~~A~~~~~~~~~~~~ 794 (808)
+.+.+ .+...+..|+.+|... | +.++|..++++..+.+.
T Consensus 155 A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98872 2455778888888654 3 88999999999988764
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.99 E-value=8.8e-09 Score=102.43 Aligned_cols=165 Identities=8% Similarity=-0.092 Sum_probs=131.8
Q ss_pred cCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH-HHHH
Q 046719 622 PSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMT-YNSL 699 (808)
Q Consensus 622 p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~-~~~l 699 (808)
.+...+..+...+...| +++|...|+++++.. +.+...+..++.++...|++++|...++++.+ ..|+... ....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHH
Confidence 33455555666677777 888888888877754 44677888899999999999999999999877 3566553 3344
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 046719 700 IFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP-SFCIYNELTNGLKQEG 777 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~g 777 (808)
...+...++.++|+..++++++ ..| +...+..++.++...|++++|+..|+++++..|.. +...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 4457778888999999999888 445 57888999999999999999999999999987652 2778999999999999
Q ss_pred ChhHHHHHHHHHHH
Q 046719 778 KLKEAQILCSEISI 791 (808)
Q Consensus 778 ~~~~A~~~~~~~~~ 791 (808)
+.++|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999988764
No 108
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.99 E-value=1.2e-08 Score=96.52 Aligned_cols=129 Identities=11% Similarity=-0.067 Sum_probs=65.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 046719 662 NALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNL 741 (808)
Q Consensus 662 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 741 (808)
..++..+...|++++|+..|+++ +.|+...+..++.++...|++++|+..++++++.. +.+...+..++.++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 33444455555555555555544 23344455555555555555555555555555421 12344455555555555
Q ss_pred CChhHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 742 KDFGGAYIWYREMFENGFIP---------------SFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 742 g~~~~A~~~~~~~~~~~~~~---------------~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
|++++|+..++++++..+.. ....+..++.++...|++++|...+++++...|+
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 55555555555555543320 1145555555555555555555555555555544
No 109
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.99 E-value=1.6e-09 Score=95.35 Aligned_cols=101 Identities=15% Similarity=0.012 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGL 773 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 773 (808)
.+..++..+...|++++|+..|+++++ ..| +...|..++.++...|++++|+..|+++++.+|. ++..+..++.+|
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 555566666666666666666666655 233 4555666666666666666666666666665554 556666666666
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 774 KQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 774 ~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
...|++++|...+++++...|++..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 6666666666666666666555433
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.98 E-value=1.5e-08 Score=95.32 Aligned_cols=161 Identities=12% Similarity=0.051 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHH----------------HHHHHHhcCChHHHHHHHHHhhhCCC
Q 046719 137 INVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGK----------------AVQAAVKIGDLKRACEIFDGMEKSRT 200 (808)
Q Consensus 137 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~ 200 (808)
+...+..+...|++++|...|+++++..+. +...|.. +..++.+.|++++|+..|++.++..+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 334444555556666666666665554332 2333333 55555566666666666666555432
Q ss_pred CCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCcCHHHHH
Q 046719 201 RPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGE--FEKVSALRERMKRDKVEVSLVMFN 278 (808)
Q Consensus 201 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~ 278 (808)
. +...+..+..++...|++++|+..|++..+..+. +..+|..+...|...|+ .+.+...++.... ..|....+.
T Consensus 86 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~ 161 (208)
T 3urz_A 86 N-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARY 161 (208)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 2 4555556666666666666666666666554322 44555555555544432 2233333333321 112222222
Q ss_pred HHHHHHHccCChhHHHHHHHHHHH
Q 046719 279 SLLGGFCKAKRMEEAKSVCKEMEA 302 (808)
Q Consensus 279 ~li~~~~~~g~~~~A~~~~~~m~~ 302 (808)
....++...|++++|+..|++.++
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 233334445556666666665554
No 111
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=2.6e-08 Score=85.93 Aligned_cols=129 Identities=14% Similarity=0.211 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHH
Q 046719 136 SINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFC 215 (808)
Q Consensus 136 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (808)
+|..++..+...|++++|..+|+++.+.++. +...+..+...+...|++++|..+|+++.+.++ .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 4556666677777777777777776665443 555666666666666777777777776665432 24555666666666
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 046719 216 KEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKR 267 (808)
Q Consensus 216 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 267 (808)
..|++++|.+.|+++.+... .+..++..+...+.+.|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666665432 2455555666666666666666666666544
No 112
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=3e-09 Score=119.70 Aligned_cols=153 Identities=11% Similarity=0.005 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 046719 639 IVAVEKLFNEML--------QINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKL 709 (808)
Q Consensus 639 ~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~ 709 (808)
+++|.+.+++.+ +. .+.+...+..++.+|...|++++|++.|+++++. .| +...|..++.++...|++
T Consensus 407 ~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 407 PVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp HHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHcCCH
Confidence 555555555554 32 2445678888999999999999999999999984 45 556899999999999999
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 046719 710 SEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSE 788 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~ 788 (808)
++|+..|+++++ +.| +...|..++.++.+.|++++ +..|+++++.++. +...+..++.+|.+.|++++|+..+++
T Consensus 484 ~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~ 559 (681)
T 2pzi_A 484 DSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLDE 559 (681)
T ss_dssp HHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 999999999998 556 57889999999999999999 9999999999887 889999999999999999999999999
Q ss_pred HHHcCCCCCc
Q 046719 789 ISIVGKDAWT 798 (808)
Q Consensus 789 ~~~~~~~~~~ 798 (808)
+++.+|++..
T Consensus 560 al~l~P~~~~ 569 (681)
T 2pzi_A 560 VPPTSRHFTT 569 (681)
T ss_dssp SCTTSTTHHH
T ss_pred hcccCcccHH
Confidence 9998887644
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.96 E-value=4e-09 Score=106.26 Aligned_cols=222 Identities=12% Similarity=0.018 Sum_probs=141.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 046719 532 MGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCK-KGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLE 610 (808)
Q Consensus 532 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 610 (808)
.|++++|.+++++..+.. + . .+.+ .+++++|...|.++ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~-~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-K-T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-C-C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-c-c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456677777777666531 1 0 1222 45666666666554 446777899999998
Q ss_pred HHHHHHHCC----CCcC-HHhHHHHHHHHHHcC-HHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHccCCHHHHHH
Q 046719 611 LYENMKKLG----IKPS-LRTYHPLLSGCIREG-IVAVEKLFNEMLQIN--L-VPD--LLVYNALIHCYAEHGDVQKALV 679 (808)
Q Consensus 611 ~~~~~~~~~----~~p~-~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~--~-~~~--~~~~~~l~~~~~~~g~~~~A~~ 679 (808)
.|.+..+.. -.+. ..++..+...+...| +++|...|++.++.. . .+. ..+++.+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 888776531 1111 345666777777777 888888888877641 1 111 3466777778877 88888888
Q ss_pred HHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCChhHH
Q 046719 680 LHSEMVDQGIRPD-------KMTYNSLIFGHLREGKLSEVKELVNDMKVK----GLIPK-ADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 680 ~~~~~~~~g~~pd-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A 747 (808)
.|++.++. .|+ ..+++.++..+...|++++|+..++++++. +..+. ...+..++.++...|++++|
T Consensus 137 ~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 137 LYQQAAAV--FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHH--HHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 88888763 221 246778888888888888888888887652 11111 22556667777777888888
Q ss_pred HHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHH
Q 046719 748 YIWYREMFENGFIPS----FCIYNELTNGLKQEGKLKEAQI 784 (808)
Q Consensus 748 ~~~~~~~~~~~~~~~----~~~~~~l~~~l~~~g~~~~A~~ 784 (808)
...+++++ ..+.-. ......++..+ ..|+.+++..
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 88888887 544211 11233444444 5677666555
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.96 E-value=1.4e-08 Score=86.38 Aligned_cols=115 Identities=13% Similarity=0.088 Sum_probs=100.0
Q ss_pred CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHH
Q 046719 654 LVPD-LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADT 730 (808)
Q Consensus 654 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~ 730 (808)
+.|+ ...+...+..|.+.|++++|++.|+++++. .| +...|..++.++.+.|++++|+..++++++ +.| +...
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a 83 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKG 83 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHH
Confidence 4454 356788899999999999999999999984 45 566899999999999999999999999998 455 5788
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGL 773 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 773 (808)
|..++.++...|++++|++.|+++++..|. +..++..|..++
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHHHhc
Confidence 999999999999999999999999999877 788887776654
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.94 E-value=1.2e-07 Score=89.41 Aligned_cols=178 Identities=12% Similarity=-0.015 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC----CHHHHHHHH
Q 046719 537 DAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLG----SSQKCLELY 612 (808)
Q Consensus 537 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 612 (808)
+|++.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..|...|.. + ++++|++.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 55556666666666666666666666666543 44555555555554 4 555555555
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCC
Q 046719 613 ENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVPDLLVYNALIHCYAE----HGDVQKALVLHSEMVDQG 688 (808)
Q Consensus 613 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 688 (808)
++..+ .+ +...+..|...|.. .+++++|++.|++..+.|
T Consensus 77 ~~A~~----------------------------------~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 119 (212)
T 3rjv_A 77 EKAVE----------------------------------AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS 119 (212)
T ss_dssp HHHHH----------------------------------TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST
T ss_pred HHHHH----------------------------------CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC
Confidence 55543 22 34455566666665 678888888888888754
Q ss_pred CC-CCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-C-----ChhHHHHHHHHHHHC
Q 046719 689 IR-PDKMTYNSLIFGHLR----EGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNL-K-----DFGGAYIWYREMFEN 757 (808)
Q Consensus 689 ~~-pd~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~ 757 (808)
.. .+...+..|+..|.. .+++++|+.++++..+. ..+...+..|+..|... | ++++|+.+|+++.+.
T Consensus 120 ~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 120 ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 21 015677888888888 77899999999998874 34555677788777653 3 889999999998887
Q ss_pred CCC
Q 046719 758 GFI 760 (808)
Q Consensus 758 ~~~ 760 (808)
|..
T Consensus 198 g~~ 200 (212)
T 3rjv_A 198 GFD 200 (212)
T ss_dssp TCH
T ss_pred CCH
Confidence 654
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.91 E-value=1.3e-08 Score=92.81 Aligned_cols=161 Identities=8% Similarity=-0.026 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHH-HH
Q 046719 137 INVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISG-FC 215 (808)
Q Consensus 137 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 215 (808)
+..+...+.+.|++++|...|+++++..+. +...+..+...+.+.|++++|+..|+++.+..+ +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 344455555566666666666555544333 455555555556666666666666665554322 22222211111 11
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHccCChhHHH
Q 046719 216 KEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEV-SLVMFNSLLGGFCKAKRMEEAK 294 (808)
Q Consensus 216 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 294 (808)
..++..+|...|++..+..+. +...+..+...+.+.|++++|...|+++.+..+.+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 112223345555555544221 34555555555555556666655555555543322 2334555555555555555555
Q ss_pred HHHHHHH
Q 046719 295 SVCKEME 301 (808)
Q Consensus 295 ~~~~~m~ 301 (808)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.88 E-value=7.8e-07 Score=87.64 Aligned_cols=221 Identities=12% Similarity=0.014 Sum_probs=136.7
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCcCHhhHHHHHHHH----Hhc--
Q 046719 111 SAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCN--QYDRALDLFDEIVCMGFRPDKFTYGKAVQAA----VKI-- 182 (808)
Q Consensus 111 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-- 182 (808)
.....++|+.+++.++..+ +-...+|+.-..++...| ++++++.+++.++...++ +..+|+.-...+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 3334568888888887765 345667888888888888 888888888888887776 566666544444 444
Q ss_pred -CChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHh--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----
Q 046719 183 -GDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIR--DAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGE----- 254 (808)
Q Consensus 183 -g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----- 254 (808)
+++++++.+++++.+..++ |-.+|+--.-.+.+.|+++ ++++.++++.+..+. |..+|+.....+.+.|.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhh
Confidence 6788888888888876543 6777777777777777777 788888888776544 77777766666666555
Q ss_pred -hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhH-HHHHHHHHHHCC--CCCCHhhHHHHHHHHHhCCChHHHHH
Q 046719 255 -FEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEE-AKSVCKEMEAHG--FDPDGFTYSMLFDGYSKCGDGEGVMA 330 (808)
Q Consensus 255 -~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~ 330 (808)
++++++.++++....+ .|...|+.+-..+.+.|+..+ +..++.++.+.+ -..+...+..++..|.+.|+.++|.+
T Consensus 201 ~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 5556666665555432 355555555555555554332 333333333221 01233444444444444444444444
Q ss_pred HHHHHH
Q 046719 331 LYEELS 336 (808)
Q Consensus 331 ~~~~~~ 336 (808)
+++.+.
T Consensus 280 ~~~~l~ 285 (306)
T 3dra_A 280 VYDLLK 285 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 118
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.86 E-value=1.4e-08 Score=92.73 Aligned_cols=126 Identities=10% Similarity=-0.012 Sum_probs=91.8
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HHccCCh--
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKG-YCNLKDF-- 744 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~-~~~~g~~-- 744 (808)
...|++++|+..+++.++. .+.+...|..++..+...|++++|...++++.+. .| +...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH-CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 4467778888888887774 1335557778888888888888888888887763 34 56667777777 6677887
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 745 GGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 745 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
++|...++++++.++. +...+..++.++...|++++|...++++++..|++..
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 8888888888877665 6777888888888888888888888888888877655
No 119
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.86 E-value=1e-08 Score=103.28 Aligned_cols=223 Identities=9% Similarity=-0.000 Sum_probs=159.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 046719 496 KDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCT-MGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAE 574 (808)
Q Consensus 496 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 574 (808)
..|++++|..++++..+.. + . .+.. .+++++|...|.++ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~-~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-K-T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-C-C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-c-c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3577889999998887641 1 1 1233 58899998888775 34577889999999
Q ss_pred HHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC---CcC--HHhHHHHHHHHHHcC-HHHHH
Q 046719 575 DMLPQITSS----GLNP-DVITYNSLISGYSSLGSSQKCLELYENMKKLGI---KPS--LRTYHPLLSGCIREG-IVAVE 643 (808)
Q Consensus 575 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~~-~~~a~ 643 (808)
..|.+..+. +-.+ -..+|+.+...|...|++++|+..|++..+... .+. ..++..+...+.. | +++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999987652 1111 135788889999999999999999998875311 121 3566677777877 8 99999
Q ss_pred HHHHHHHHCCCCC-C----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHhHHH
Q 046719 644 KLFNEMLQINLVP-D----LLVYNALIHCYAEHGDVQKALVLHSEMVDQGI-RPD----KMTYNSLIFGHLREGKLSEVK 713 (808)
Q Consensus 644 ~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~pd----~~~~~~l~~~~~~~g~~~~A~ 713 (808)
+.|++.++..... + ..+++.+...|.+.|++++|+..|+++++... .++ ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999998742111 1 45788889999999999999999999987311 111 125667788888899999999
Q ss_pred HHHHHHHHCCCCCC------HHHHHHHHHHHHccCChhHHHH
Q 046719 714 ELVNDMKVKGLIPK------ADTYNILVKGYCNLKDFGGAYI 749 (808)
Q Consensus 714 ~~~~~~~~~g~~p~------~~~~~~l~~~~~~~g~~~~A~~ 749 (808)
..+++.+ . .|+ ......++.++ ..|+.+.+..
T Consensus 216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999988 3 332 12344555555 5677766655
No 120
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.85 E-value=6.7e-08 Score=96.02 Aligned_cols=167 Identities=8% Similarity=-0.031 Sum_probs=127.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHH-H
Q 046719 131 RLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYN-V 209 (808)
Q Consensus 131 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ 209 (808)
+.+...+..+...+.+.|++++|...|+++++..+. +...+..+...+.+.|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 445667888888899999999999999999887666 77888888889999999999999999887754 3433322 2
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHccC
Q 046719 210 LISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEV-SLVMFNSLLGGFCKAK 288 (808)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 288 (808)
....+.+.++.++|...|++.....+. +...+..+...|.+.|++++|...|+++.+..+.. +...+..++..|...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 233356777888888888888776433 67788888888888888888888888887754432 2556777888888888
Q ss_pred ChhHHHHHHHHHH
Q 046719 289 RMEEAKSVCKEME 301 (808)
Q Consensus 289 ~~~~A~~~~~~m~ 301 (808)
+.++|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888887777654
No 121
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.85 E-value=1.1e-08 Score=89.33 Aligned_cols=100 Identities=14% Similarity=-0.004 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGL 773 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 773 (808)
.+..++..+...|++++|+..|+++++ ..| +...|..++.++...|++++|+..|+++++.+|. ++..+..++.+|
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 444555555555666666665555554 223 3455555555555566666666666665555544 455555555566
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC
Q 046719 774 KQEGKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 774 ~~~g~~~~A~~~~~~~~~~~~~~~ 797 (808)
...|++++|...+++++...|++.
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCc
Confidence 666666666666665555555443
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.82 E-value=1.1e-07 Score=85.66 Aligned_cols=131 Identities=11% Similarity=-0.021 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 658 LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKG 737 (808)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 737 (808)
...+..++..+...|++++|...|++.++. .+.+...+..++.++...|++++|...++++++.. +.+...+..++.+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 346777888899999999999999999984 23356689999999999999999999999998842 3357889999999
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHHHH
Q 046719 738 YCNLKDFGGAYIWYREMFENGFIPSFCIYNE--LTNGLKQEGKLKEAQILCSEISI 791 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~l~~~g~~~~A~~~~~~~~~ 791 (808)
+...|++++|...++++++..+. +...+.. ++..+...|++++|...+.+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999998766 6666644 44448889999999999987754
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.82 E-value=3.7e-08 Score=100.28 Aligned_cols=129 Identities=13% Similarity=0.033 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 658 LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD----------------KMTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
...+..+...|.+.|++++|+..|+++++. .|+ ...|..++.++.+.|++++|+..++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777888888889999999999988884 444 36888999999999999999999999988
Q ss_pred CCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 046719 722 KGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEA-QILCSEISI 791 (808)
Q Consensus 722 ~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A-~~~~~~~~~ 791 (808)
+.| +...|..++.+|...|++++|+..|+++++..|. +..++..++.++...|+.++| ...+++|..
T Consensus 225 --~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 --LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 6788889999999999999999999999998777 788999999999999999988 556777664
No 124
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.81 E-value=3.1e-07 Score=87.53 Aligned_cols=60 Identities=8% Similarity=0.050 Sum_probs=40.3
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 046719 279 SLLGGFCKAKRMEEAKSVCKEMEAHGFDPDG----FTYSMLFDGYSKCGDGEGVMALYEELSGRGF 340 (808)
Q Consensus 279 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 340 (808)
.+...|.+.|++++|+..|+++++. .|+. ..+..+..+|.+.|+.++|.+.++.+...+.
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 3455666777777777777777765 2321 3566677777777777777777777766543
No 125
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.80 E-value=1.2e-07 Score=104.75 Aligned_cols=154 Identities=12% Similarity=-0.021 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVN 717 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~ 717 (808)
+++|.+.++++++.. +.+...+..+...|...|++++|++.+++.++. .| +...+..++.++...|++++|.+.++
T Consensus 5 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 5 GPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 566677777766643 334566777777777777777777777777763 34 34467777777777777777777777
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHcC
Q 046719 718 DMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQE---GKLKEAQILCSEISIVG 793 (808)
Q Consensus 718 ~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---g~~~~A~~~~~~~~~~~ 793 (808)
++++. .| +...+..++.++.+.|++++|.+.++++++..+. +...+..++.++... |+.++|...++++++.+
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 77663 34 4566777777777777777777777777776655 666777777777777 77777777777777777
Q ss_pred CCCCc
Q 046719 794 KDAWT 798 (808)
Q Consensus 794 ~~~~~ 798 (808)
|+...
T Consensus 159 p~~~~ 163 (568)
T 2vsy_A 159 VGAVE 163 (568)
T ss_dssp CCCSC
T ss_pred CcccC
Confidence 66543
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=7.5e-07 Score=88.86 Aligned_cols=162 Identities=10% Similarity=-0.013 Sum_probs=118.3
Q ss_pred HHHHHHcC-HHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 046719 631 LSGCIREG-IVAVEKLFNEMLQINL-VPD----LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIR-PD----KMTYNSL 699 (808)
Q Consensus 631 ~~~~~~~~-~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-pd----~~~~~~l 699 (808)
+..+...| +++|.+.+++..+... .|+ ...+..+...+...|++++|+..++++++.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34455556 7777777777665321 122 123445777778888999999999999984222 23 2268899
Q ss_pred HHHHHhcCCHhHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCC----CCC-HHHHHH
Q 046719 700 IFGHLREGKLSEVKELVNDMKV----K-GLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGF----IPS-FCIYNE 768 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~~----~-g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~-~~~~~~ 768 (808)
+.+|...|++++|..+++++++ . +..+. ..++..++.+|.+.|++++|+.+++++++... .+. ..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9999999999999999999873 1 11121 34788999999999999999999999886422 112 678899
Q ss_pred HHHHHHhcCC-hhHHHHHHHHHHHc
Q 046719 769 LTNGLKQEGK-LKEAQILCSEISIV 792 (808)
Q Consensus 769 l~~~l~~~g~-~~~A~~~~~~~~~~ 792 (808)
++.++.+.|+ +++|...+++++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999995 69999999998853
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.79 E-value=1.9e-07 Score=89.58 Aligned_cols=133 Identities=12% Similarity=-0.032 Sum_probs=106.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK--ADTYNILVKG 737 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~ 737 (808)
....++..+...|++++|.++|+.+... .|+......++..+.+.+++++|+..|+...... .|. ...+..++.+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 3445667788899999999999988773 4655577788889999999999999998765521 121 3467888999
Q ss_pred HHccCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 738 YCNLKDFGGAYIWYREMFENGFIP--SFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
+...|++++|+..|+++......| ........+.++.+.|+.++|...++++...+|+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 999999999999999998533214 3457888999999999999999999999999987
No 128
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.78 E-value=3.9e-08 Score=83.74 Aligned_cols=97 Identities=13% Similarity=0.061 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC------HHHHHH
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPS------FCIYNE 768 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~ 768 (808)
+..++..+.+.|++++|+..|+++++ +.| +...|..++.+|.+.|++++|+..++++++.++... ..++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34444444444444444444444444 223 233444444444444444444444444444322110 123444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCC
Q 046719 769 LTNGLKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 769 l~~~l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
++.++...|++++|+..+++.+...|
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 44444555555555555555444433
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.78 E-value=4.9e-08 Score=85.54 Aligned_cols=100 Identities=9% Similarity=-0.119 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHH
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNIL 734 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l 734 (808)
+...+..+...+.+.|++++|+..|+++++ +.| +...|..++.++...|++++|+..|+++++ +.| ++..|..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~l 110 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHH
Confidence 346778888999999999999999999998 456 566899999999999999999999999998 556 57889999
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 735 VKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 735 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+.+|.+.|++++|+..|+++++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999998644
No 130
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.76 E-value=7.8e-08 Score=86.44 Aligned_cols=105 Identities=13% Similarity=0.058 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHH
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNIL 734 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l 734 (808)
+...+..+...+...|++++|+..|++.++. .| +...|..++.+|...|++++|+..++++++ +.| +...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 4567778888888888999999998888884 44 556888888888888889999888888887 445 47778888
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHHH
Q 046719 735 VKGYCNLKDFGGAYIWYREMFENGFIPSFCIY 766 (808)
Q Consensus 735 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 766 (808)
+.++...|++++|+..|+++++..+. +...+
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 116 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGN-GGSDA 116 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSS-SCCHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC-chHHH
Confidence 88888888999998888888887655 44433
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.75 E-value=1.5e-07 Score=80.86 Aligned_cols=118 Identities=12% Similarity=0.044 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHH
Q 046719 656 PDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNI 733 (808)
Q Consensus 656 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ 733 (808)
.+...+..++..+...|++++|+..|+++++. .| +...+..++.++...|++++|...++++.+. .| +...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~ 89 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTR 89 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHH
Confidence 34567777888888888888888888888874 34 5567888888888888888888888888773 34 5677888
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 734 LVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGK 778 (808)
Q Consensus 734 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 778 (808)
++.++...|++++|...++++++..+. +...+..++.++...|+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhcC
Confidence 888888888888888888888887655 56777777777776654
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.75 E-value=2.1e-07 Score=79.65 Aligned_cols=119 Identities=8% Similarity=-0.001 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILV 735 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 735 (808)
+...+..++..+...|++++|+..++++.+. .+.+...+..++..+...|++++|...++++.+. .| +...+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHH
Confidence 4567777888889999999999999999884 2335668889999999999999999999998874 44 577888999
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 046719 736 KGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKL 779 (808)
Q Consensus 736 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 779 (808)
.++...|++++|..+++++++..+. +...+..++.++.+.|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 9999999999999999999988766 778888888888888775
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.74 E-value=7.7e-08 Score=81.95 Aligned_cols=94 Identities=15% Similarity=0.065 Sum_probs=44.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKG 737 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~ 737 (808)
.+..++..+.+.|++++|+..|++.++. .| +...|..++.++...|++++|+..++++++ +.| +...|..++.+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 3444444444555555555555555442 22 233444445555555555555555555444 223 23444444444
Q ss_pred HHccCChhHHHHHHHHHHHC
Q 046719 738 YCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~~ 757 (808)
+...|++++|+..++++++.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 55555555555555554444
No 134
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.74 E-value=2.8e-07 Score=78.03 Aligned_cols=117 Identities=16% Similarity=0.205 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 658 LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKG 737 (808)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 737 (808)
...+..++..+...|++++|.+.++++.+.. +.+..++..++..+...|++++|..+++++.+.. +.+..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4567777778888888888888888887742 3345577788888888888888888888877642 2356677788888
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 738 YCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG 777 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 777 (808)
+...|++++|..+++++++..+. +...+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcc
Confidence 88888888888888888877665 6667777776665543
No 135
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.72 E-value=2.7e-07 Score=87.07 Aligned_cols=125 Identities=6% Similarity=-0.075 Sum_probs=85.3
Q ss_pred HHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 046719 631 LSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKL 709 (808)
Q Consensus 631 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~ 709 (808)
...+...| +++|.+.|++.+ .|+...+..++..|...|++++|++.|++.++.. +.+...+..++.++...|++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 33444455 566666555542 3456677777777777888888888888777741 22445777778888888888
Q ss_pred hHHHHHHHHHHHCCC--------------CC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 710 SEVKELVNDMKVKGL--------------IP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~--------------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
++|+..++++.+... .| ....+..++.++.+.|++++|...++++++..+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 888888887776321 11 1266778888888888888888888888877654
No 136
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.71 E-value=7.9e-08 Score=80.97 Aligned_cols=99 Identities=11% Similarity=-0.038 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGL 773 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 773 (808)
.+..++..+.+.|++++|+..++++++ ..| +...|..++.++...|++++|+..++++++.+|. +...+..++.+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 456677888888888888888888887 445 5777888888888889999999999888888776 788888888888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCC
Q 046719 774 KQEGKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 774 ~~~g~~~~A~~~~~~~~~~~~~~ 796 (808)
...|++++|+..+++++...|+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-----
T ss_pred HHcCCHHHHHHHHHHHHHhCcCC
Confidence 88899999999998888877764
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=1.2e-06 Score=87.31 Aligned_cols=130 Identities=8% Similarity=-0.009 Sum_probs=96.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCC-----HHH
Q 046719 662 NALIHCYAEHGDVQKALVLHSEMVDQGI---RPD--KMTYNSLIFGHLREGKLSEVKELVNDMKVK-GLIPK-----ADT 730 (808)
Q Consensus 662 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~-----~~~ 730 (808)
..++..+...|++++|+..++++.+... .+. ..+++.++..|...|++++|..+++++.+. ...|+ ..+
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~ 198 (293)
T 2qfc_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHH
Confidence 3456667788899999999988876321 111 337888899999999999999999887621 01222 257
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCC----C-CHHHHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMFENGFI----P-SFCIYNELTNGLKQEGKLKEA-QILCSEISI 791 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~-~~~~~~~l~~~l~~~g~~~~A-~~~~~~~~~ 791 (808)
+..++.+|...|++++|+.+++++++.... . -...+..++.++.+.|++++| ...+++++.
T Consensus 199 ~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 788889999999999999999988764211 0 156788899999999999999 777887764
No 138
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.67 E-value=3e-07 Score=78.22 Aligned_cols=98 Identities=10% Similarity=-0.031 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 693 KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTN 771 (808)
Q Consensus 693 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 771 (808)
...+..++..+...|++++|+..++++++. .| +...|..++.++.+.|++++|+..++++++.+|. +...+..++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 346788999999999999999999999884 45 6788999999999999999999999999998877 7899999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcC
Q 046719 772 GLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 772 ~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
++...|++++|...+++++...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.67 E-value=2.5e-07 Score=81.13 Aligned_cols=110 Identities=10% Similarity=-0.101 Sum_probs=92.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 046719 646 FNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGL 724 (808)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 724 (808)
++++++.. +.+...+..+...+...|++++|+..|+++++. .| +...|..++.++...|++++|+..++++++ +
T Consensus 10 ~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l 84 (148)
T 2vgx_A 10 IAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--M 84 (148)
T ss_dssp HHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--c
Confidence 44444432 224567778889999999999999999999984 45 666899999999999999999999999988 4
Q ss_pred CC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 725 IP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 725 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
.| ++..+..++.++...|++++|...|+++++..+.
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 45 5788899999999999999999999999987654
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.66 E-value=1.9e-07 Score=79.40 Aligned_cols=107 Identities=15% Similarity=0.185 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC--CCCC----HHHH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKG--LIPK----ADTY 731 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p~----~~~~ 731 (808)
..+..++..+.+.|++++|++.|+++++ +.| +...|..++.+|...|++++|++.++++++.. ..++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4677789999999999999999999998 456 45689999999999999999999999987631 1111 2467
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 046719 732 NILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNEL 769 (808)
Q Consensus 732 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 769 (808)
..++.++...|++++|++.|+++++.. |++.....|
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~~l 122 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEF--RDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--cCHHHHHHH
Confidence 888999999999999999999999864 455554443
No 141
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.65 E-value=8.8e-06 Score=80.92 Aligned_cols=176 Identities=11% Similarity=0.012 Sum_probs=128.2
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhc-C-Ch
Q 046719 109 LSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCN-QYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKI-G-DL 185 (808)
Q Consensus 109 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~ 185 (808)
+......++|+++++.++..+ +-+..+|+....++...| .+++++.+++.++...++ +..+|+.-...+.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence 444556678889888888765 346777898888888888 599999999999988777 788888877777666 6 88
Q ss_pred HHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHh--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---
Q 046719 186 KRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIR--------DAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGE--- 254 (808)
Q Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--- 254 (808)
++++.+++++++..++ |-.+|+-..-.+.+.|.++ ++++.++++.+..+. |..+|+.....+.+.++
T Consensus 142 ~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 8999999999887543 7777777666666666666 888888888877554 78888888777777765
Q ss_pred ----hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC
Q 046719 255 ----FEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKR 289 (808)
Q Consensus 255 ----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 289 (808)
++++++.+++.....+ -|...|+.+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 5667777766665432 355666655555544443
No 142
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=3.2e-06 Score=84.22 Aligned_cols=163 Identities=13% Similarity=-0.002 Sum_probs=107.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCcC-H----HhHHHHHHHHHHcC-HHHHHHHHHHHHHCCC---CCC--HHHHH
Q 046719 594 SLISGYSSLGSSQKCLELYENMKKLGIKPS-L----RTYHPLLSGCIREG-IVAVEKLFNEMLQINL---VPD--LLVYN 662 (808)
Q Consensus 594 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~---~~~--~~~~~ 662 (808)
..+..+...|++++|.+.+++..+...... . ..+..+...+...| +++|.+.+++.++... .+. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344455556666666666655554321110 0 11122233344455 6666666666654211 111 45788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC----CCC-CHHHH
Q 046719 663 ALIHCYAEHGDVQKALVLHSEMVDQ-GIRPD-----KMTYNSLIFGHLREGKLSEVKELVNDMKVKG----LIP-KADTY 731 (808)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~~~~~-g~~pd-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~p-~~~~~ 731 (808)
.++..|...|++++|+..|+++.+. ...|+ ..+++.++..|...|++++|+.+++++++.. ... -..++
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 8999999999999999999998731 01222 1478899999999999999999999986521 111 15678
Q ss_pred HHHHHHHHccCChhHH-HHHHHHHHH
Q 046719 732 NILVKGYCNLKDFGGA-YIWYREMFE 756 (808)
Q Consensus 732 ~~l~~~~~~~g~~~~A-~~~~~~~~~ 756 (808)
..++.++.+.|++++| ..+++++++
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 8999999999999999 788988875
No 143
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.64 E-value=1.5e-07 Score=81.14 Aligned_cols=100 Identities=13% Similarity=-0.027 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHccCChhHHHHHHHHHHHC-----
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-------------ADTYNILVKGYCNLKDFGGAYIWYREMFEN----- 757 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 757 (808)
+...+..+.+.|++++|+..|+++++ +.|+ ...|..++.++.+.|++++|+..++++++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 44455555555666666666665554 2332 236777788888888888888888888877
Q ss_pred --CCCCCHHHH----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 758 --GFIPSFCIY----NELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 758 --~~~~~~~~~----~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+|. +...| +..+.+|...|++++|+..|+++++..|++-.
T Consensus 92 e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 92 ELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp CTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred cCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 665 67777 88888888888888888888888877665443
No 144
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.64 E-value=2.9e-06 Score=84.58 Aligned_cols=161 Identities=14% Similarity=0.038 Sum_probs=111.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCC-CcCHH----hHHHHHHHHHHcC-HHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 046719 596 ISGYSSLGSSQKCLELYENMKKLGI-KPSLR----TYHPLLSGCIREG-IVAVEKLFNEMLQINLV-PD----LLVYNAL 664 (808)
Q Consensus 596 ~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~----~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~-~~----~~~~~~l 664 (808)
+..+...|++++|..++++..+... .|+.. .+..+...+...+ +++|.+.++++++.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4455667777777777777665321 12211 1122333344455 77777777777763211 22 3468899
Q ss_pred HHHHHccCCHHHHHHHHHHHHHC-----CCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCC-HHHHHH
Q 046719 665 IHCYAEHGDVQKALVLHSEMVDQ-----GIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVK----GLIPK-ADTYNI 733 (808)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~~~~~-----g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~ 733 (808)
+..|...|++++|+..|+++++. +..+... ++..++..|...|++++|+.+++++++. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999999999999999999841 2223333 7889999999999999999999998642 22222 678889
Q ss_pred HHHHHHccCC-hhHHHHHHHHHHH
Q 046719 734 LVKGYCNLKD-FGGAYIWYREMFE 756 (808)
Q Consensus 734 l~~~~~~~g~-~~~A~~~~~~~~~ 756 (808)
++.++.+.|+ +++|...++++++
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999995 6999999999875
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.63 E-value=3.3e-07 Score=85.33 Aligned_cols=131 Identities=8% Similarity=-0.073 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK----------------MTYNSLIFGHLREGKLSEVKELVNDMKVK 722 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 722 (808)
..+..+...+...|++++|+..|++.++.. +.+. ..+..++.++...|++++|+..++++++.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 456667778888999999999999988741 1122 67888999999999999999999999884
Q ss_pred CCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHHcC
Q 046719 723 GLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQ-ILCSEISIVG 793 (808)
Q Consensus 723 g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~-~~~~~~~~~~ 793 (808)
.| +...+..++.++...|++++|+..|+++++..+. +...+..+..++...|+.+++. ..+.++...+
T Consensus 118 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 118 --DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp --STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC-------------
T ss_pred --CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45 5788899999999999999999999999998776 7888999999999988888887 5666665543
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.63 E-value=2.5e-07 Score=86.51 Aligned_cols=153 Identities=14% Similarity=0.057 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHhHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQ----GIRPD-KMTYNSLIFGHLREGKLSEVK 713 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~pd-~~~~~~l~~~~~~~g~~~~A~ 713 (808)
+++|.+.++.+.. ........+..+...+...|++++|+..+++.++. +..|. ..++..++..+...|++++|.
T Consensus 8 ~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 86 (203)
T 3gw4_A 8 YALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAAR 86 (203)
T ss_dssp HHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5555553333322 11234556777777777788888888887777651 22222 236777778888888888888
Q ss_pred HHHHHHHHC----CCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHhcCChhHH
Q 046719 714 ELVNDMKVK----GLIP--KADTYNILVKGYCNLKDFGGAYIWYREMFENGF---IPS--FCIYNELTNGLKQEGKLKEA 782 (808)
Q Consensus 714 ~~~~~~~~~----g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~l~~~g~~~~A 782 (808)
..+++..+. +..| ....+..++.++...|++++|...++++++... .+. ...+..++.++...|++++|
T Consensus 87 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 166 (203)
T 3gw4_A 87 RCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA 166 (203)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence 888776542 1111 133466777778888888888888888764211 111 23356777888888888888
Q ss_pred HHHHHHHHHc
Q 046719 783 QILCSEISIV 792 (808)
Q Consensus 783 ~~~~~~~~~~ 792 (808)
...+++++..
T Consensus 167 ~~~~~~al~~ 176 (203)
T 3gw4_A 167 QQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777754
No 147
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=5.8e-07 Score=78.90 Aligned_cols=110 Identities=10% Similarity=-0.013 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHH
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD----KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTY 731 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~ 731 (808)
+...+..++..+...|++++|++.|++.++ ..|+ ...+..++.++...|++++|+..++++.+. .| +...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHH
Confidence 344555555556666666666666666655 2344 335555555556666666666666555542 23 34455
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 732 NILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTN 771 (808)
Q Consensus 732 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 771 (808)
..++.++...|++++|..+++++++..+. +...+..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHH
Confidence 55555555566666666666665555443 3444433333
No 148
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.62 E-value=1.4e-05 Score=79.17 Aligned_cols=151 Identities=11% Similarity=-0.034 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGD-VQKALVLHSEMVDQGIRPDKMTYNSLIFGHLRE----------- 706 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~----------- 706 (808)
++++.++++++++.+ +.+...|+.-..++...|. ++++++.++++++.. +-|...|+.....+...
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccc
Confidence 344444444444432 3334444444444444444 345555555555421 11333444444443333
Q ss_pred ---CCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc-----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 707 ---GKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNL-----------KDFGGAYIWYREMFENGFIPSFCIYNELTN 771 (808)
Q Consensus 707 ---g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 771 (808)
+.++++++++++++. ..| |...|+.+-..+.+. +.++++++.++++++..|+ +.-++..++.
T Consensus 204 ~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~ 280 (331)
T 3dss_A 204 LPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE-NKWCLLTIIL 280 (331)
T ss_dssp CCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHH
Confidence 234455555555554 233 344444333333332 2345555555555555433 2222222211
Q ss_pred ---HHHhcCChhHHHHHHHHHHHcCC
Q 046719 772 ---GLKQEGKLKEAQILCSEISIVGK 794 (808)
Q Consensus 772 ---~l~~~g~~~~A~~~~~~~~~~~~ 794 (808)
.+...|..++...++.++.+..|
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 281 LMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHhhcccccHHHHHHHHHHHHHhCc
Confidence 11234455555555555555444
No 149
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.62 E-value=1.6e-05 Score=79.02 Aligned_cols=173 Identities=9% Similarity=-0.058 Sum_probs=134.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcC-ChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHcc-C-CHhHH
Q 046719 147 CNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIG-DLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKE-K-KIRDA 223 (808)
Q Consensus 147 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A 223 (808)
.+..++|+.+++.++..++. +..+|+.--..+...| ++++++.+++.++...++ +..+|+.-.-.+.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 34556899999999998877 7888998888888888 599999999999998654 777888887777776 7 88999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC------
Q 046719 224 EKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFE--------KVSALRERMKRDKVEVSLVMFNSLLGGFCKAKR------ 289 (808)
Q Consensus 224 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 289 (808)
+++++.+.+.... |..+|+--.-.+.+.|.++ ++.+.++++.+..+ .|...|+.....+.+.++
T Consensus 145 L~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchH
Confidence 9999999987554 7888887777776666666 88888888887643 477778877777777765
Q ss_pred -hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCC
Q 046719 290 -MEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGD 324 (808)
Q Consensus 290 -~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 324 (808)
++++++.+++++.... -|...|+.+-..+.+.|.
T Consensus 223 ~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 6788888888877532 266677776666655554
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.62 E-value=1.3e-07 Score=82.43 Aligned_cols=100 Identities=12% Similarity=-0.065 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHH
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNIL 734 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l 734 (808)
+...+..+...+.+.|++++|+..|+++++. .| +...|..++.++...|++++|+..++++++ +.| ++..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 92 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGAL--MDINEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHH
Confidence 3456677888899999999999999999984 45 566899999999999999999999999998 445 57888999
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 735 VKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 735 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+.++...|++++|...|+++++..|.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999987654
No 151
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.61 E-value=1.4e-07 Score=93.30 Aligned_cols=192 Identities=9% Similarity=-0.038 Sum_probs=110.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 591 TYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYA 669 (808)
Q Consensus 591 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 669 (808)
.+..+...+...|++++|+..|++..+.. +.+...+..+...+...| +++|.+.+++.++.. +.+...+..++.+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444455555555555555554421 123444444444555555 555555555555432 345667788888899
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHH
Q 046719 670 EHGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAY 748 (808)
Q Consensus 670 ~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 748 (808)
..|++++|+..|+++.+. .|+.. .+...++...+. .++... ......-...+......+...+ .|++++|+
T Consensus 84 ~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 999999999999988873 34321 222222222221 122222 2222232444555555554433 78999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHcC
Q 046719 749 IWYREMFENGFIPSFCIYNELTNGLKQE-GKLKEAQILCSEISIVG 793 (808)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~A~~~~~~~~~~~ 793 (808)
+.++++++..+. +......+...+.+. +++++|..+|+++.+..
T Consensus 156 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 156 EECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp TTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999998877554 555555666666665 67889999998887643
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.60 E-value=6.2e-07 Score=74.93 Aligned_cols=107 Identities=15% Similarity=0.036 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKG 737 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~ 737 (808)
..+..++..+...|++++|...++++.+. .+.+...+..++..+...|++++|...++++.+. .| +...+..++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 34444555555555555555555555542 1123344555555555555555555555555542 22 34445555555
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 046719 738 YCNLKDFGGAYIWYREMFENGFIPSFCIYNEL 769 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 769 (808)
+...|++++|...++++++.++. +...+..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 112 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGL 112 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 55555555555555555554433 33333333
No 153
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.60 E-value=3.1e-07 Score=78.47 Aligned_cols=94 Identities=19% Similarity=0.184 Sum_probs=41.8
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 046719 699 LIFGHLREGKLSEVKELVNDMKVKGLIPK-A---DTYNILVKGYCNLKDFGGAYIWYREMFENGFIPS---FCIYNELTN 771 (808)
Q Consensus 699 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 771 (808)
++..+...|++++|...++++.+. .|+ . ..+..++.++...|++++|+..++++++..|. + ...+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence 344444444444444444444431 121 1 23444444444444444444444444444333 2 334444444
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC
Q 046719 772 GLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 772 ~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
++...|++++|...++++++..|+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC
Confidence 444444444444444444444443
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.59 E-value=4.7e-07 Score=78.33 Aligned_cols=97 Identities=6% Similarity=-0.048 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHH
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNIL 734 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l 734 (808)
+...+..++..+...|++++|+..|++.++. .| +...|..++.++...|++++|...++++++. .| +...+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHH
Confidence 3445555555555555555555555555552 22 2335555555555555555555555555542 23 34445555
Q ss_pred HHHHHccCChhHHHHHHHHHHHC
Q 046719 735 VKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 735 ~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
+.++...|++++|+..++++++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 55555555555555555555543
No 155
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=5.6e-07 Score=77.22 Aligned_cols=104 Identities=12% Similarity=0.030 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELT 770 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 770 (808)
+...+..++..+...|++++|...++++.+. .| +...+..++.++...|++++|+..++++++..+. +...+..++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 4457889999999999999999999999884 45 6788999999999999999999999999998766 889999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 771 NGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 771 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.++...|++++|...++++++..|++..
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 119 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKE 119 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchH
Confidence 9999999999999999999999887654
No 156
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.58 E-value=6.4e-07 Score=74.02 Aligned_cols=104 Identities=14% Similarity=0.063 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 046719 693 KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFI-PSFCIYNELTN 771 (808)
Q Consensus 693 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~ 771 (808)
...+..++..+...|++++|...++++.+.. ..+...+..++.++...|++++|+..++++++..+. .+...+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3456677777777888888888888777632 235667777788888888888888888888776432 14667778888
Q ss_pred HHHhc-CChhHHHHHHHHHHHcCCCCC
Q 046719 772 GLKQE-GKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 772 ~l~~~-g~~~~A~~~~~~~~~~~~~~~ 797 (808)
++... |++++|.+.++++++..|...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 888888888888887777654
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.57 E-value=1.7e-06 Score=72.20 Aligned_cols=103 Identities=13% Similarity=-0.034 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 693 KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTN 771 (808)
Q Consensus 693 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 771 (808)
...+..++..+...|++++|...++++.+. .| +...+..++.++...|++++|...++++++..+. +...+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 456788999999999999999999999874 44 6788889999999999999999999999998766 7889999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 772 GLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 772 ~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
++...|++++|...++++++..|++..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~ 107 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQ 107 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 999999999999999999998887654
No 158
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.57 E-value=1e-06 Score=74.41 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 693 KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNG 772 (808)
Q Consensus 693 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 772 (808)
...+..++..+...|++++|.++++++.+.. +.+...+..++.++...|++++|..+++++.+..+. +...+..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 4578899999999999999999999998742 336788899999999999999999999999998766 78899999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 773 LKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 773 l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+...|++++|..++++++...|++..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~ 112 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAE 112 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHH
Confidence 99999999999999999999887655
No 159
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.56 E-value=6.2e-07 Score=86.04 Aligned_cols=189 Identities=12% Similarity=-0.053 Sum_probs=91.5
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhhHHHH-------HHHHHhcCChHHHHHHHHHhhhCCCC-----CC----------
Q 046719 146 RCNQYDRALDLFDEIVCMGFRPDKFTYGKA-------VQAAVKIGDLKRACEIFDGMEKSRTR-----PN---------- 203 (808)
Q Consensus 146 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~---------- 203 (808)
..+++..|+..|.+++...+. ....|..+ ...+.+.++..+++..+.+.++..+. -+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 356666666666666665544 45555555 34444444555555555544441100 00
Q ss_pred -----hhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC--HHH
Q 046719 204 -----VFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVS--LVM 276 (808)
Q Consensus 204 -----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~ 276 (808)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 1122234445555666666666666555432 333244444445556666666666665433211 110 124
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 046719 277 FNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPD--GFTYSMLFDGYSKCGDGEGVMALYEELSGR 338 (808)
Q Consensus 277 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 338 (808)
+..+..++...|++++|+..|++.......|. ......+..++.+.|+.++|..+|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44455555566666666666665553221132 123334444455555555555555555443
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.55 E-value=8e-07 Score=79.73 Aligned_cols=104 Identities=9% Similarity=-0.114 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELT 770 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 770 (808)
+...+..++..+...|++++|+..|+++++ +.| +...|..++.+|...|++++|+..++++++.++. +...+..++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 344777888888889999999999998887 445 5777888888888899999999999998888766 788888889
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 771 NGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 771 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.+|...|++++|+..+++++...|++..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 9999999999999999999888888776
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=2e-06 Score=75.34 Aligned_cols=104 Identities=11% Similarity=-0.059 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHH
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK----ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYN 767 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 767 (808)
+...+..++..+...|++++|+..++++.+ ..|+ ...|..++.++...|++++|+..++++++..+. +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 556888999999999999999999999988 5676 677889999999999999999999999988766 788999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 768 ELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 768 ~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.++.++...|++++|...+++++...|++..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 134 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKV 134 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 9999999999999999999999999888765
No 162
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.52 E-value=2.8e-06 Score=76.18 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 046719 135 DSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGF 214 (808)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (808)
..+..++..+...|++++|...|+++++..+. +...|..+...+...|++++|...|++..+..+ .+..++..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 34666777777777777777777777765444 566677777777777777777777777766532 2555666777777
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHH
Q 046719 215 CKEKKIRDAEKLFDEMCQRKLVPTRVTYNT--LVDGYCKVGEFEKVSALRERM 265 (808)
Q Consensus 215 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~~ 265 (808)
...|++++|...|++..+.... +...+.. ++..+.+.|++++|...++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 7777777777777776665322 3334422 233355566666666666554
No 163
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.52 E-value=1.8e-07 Score=95.24 Aligned_cols=134 Identities=9% Similarity=-0.055 Sum_probs=76.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKM------------------TYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
.+..+...+.+.|++++|+..|+++++ +.|+.. .|..++.+|.+.|++++|+..++++++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566667777777777777777776 344433 788999999999999999999999988
Q ss_pred CCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 722 KGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNG-LKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 722 ~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+.| +...|..++.+|...|++++|+..|+++++..+. +..++..+..+ ....+..+++...+.+++...|++.+
T Consensus 259 --~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 259 --EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp --HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred --hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 455 6788999999999999999999999999987766 67777777777 45567888999999999998887765
No 164
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=1.7e-06 Score=73.84 Aligned_cols=105 Identities=11% Similarity=0.007 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTN 771 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 771 (808)
+...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|+..++++++..+. +...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHH
Confidence 34578889999999999999999999998742 336788999999999999999999999999998766 7889999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 772 GLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 772 ~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
++...|++++|...+++++...|++..
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 115 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNET 115 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchH
Confidence 999999999999999999999887654
No 165
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.49 E-value=5.3e-07 Score=80.70 Aligned_cols=101 Identities=11% Similarity=-0.025 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-------CC---------CCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 046719 658 LLVYNALIHCYAEHGDVQKALVLHSEMVDQ-------GI---------RPD-KMTYNSLIFGHLREGKLSEVKELVNDMK 720 (808)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~---------~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 720 (808)
...+...+..+.+.|++++|+..|++.++. .- .|. ...|..++.+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445666777777888888888888887763 00 122 2356666666777777777777777766
Q ss_pred HCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 721 VKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 721 ~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+ +.| +...|..++.++...|++++|+..|+++++..|.
T Consensus 91 ~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 91 K--REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp H--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred h--cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 6 334 4556666677777777777777777777666544
No 166
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.48 E-value=2.9e-07 Score=91.03 Aligned_cols=99 Identities=10% Similarity=-0.035 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHH
Q 046719 133 SLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLIS 212 (808)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 212 (808)
+...+..++..+.+.|++++|...|+++++..+. +...|..+..++.+.|++++|...++++++..+ .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 4566777778888888888888888888776554 677777777888888888888888888777543 35667777778
Q ss_pred HHHccCCHhHHHHHHHHHHhC
Q 046719 213 GFCKEKKIRDAEKLFDEMCQR 233 (808)
Q Consensus 213 ~~~~~g~~~~A~~~~~~m~~~ 233 (808)
+|...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888777654
No 167
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.48 E-value=2.7e-05 Score=77.05 Aligned_cols=154 Identities=8% Similarity=0.032 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HhHHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHG--DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGK-LSEVKEL 715 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~-~~~A~~~ 715 (808)
++++.++++.++..+ +.+..+|+.-..++...| .+++++.+++++++.. +-|...|+.-.+++...|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 567888888888764 567888988888888888 4899999999999952 3367799999999999998 6999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcc--------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 046719 716 VNDMKVKGLIPKADTYNILVKGYCNL--------------KDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQE----- 776 (808)
Q Consensus 716 ~~~~~~~g~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----- 776 (808)
++++++.. +.|...|+.....+... +.++++++++++++...|. |..+|+.+-..+...
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence 99999843 34788898888777765 4588999999999999888 888898777777666
Q ss_pred ------CChhHHHHHHHHHHHcCCCC
Q 046719 777 ------GKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 777 ------g~~~~A~~~~~~~~~~~~~~ 796 (808)
+..+++++.++++++..|++
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc
Confidence 56899999999999999875
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.47 E-value=7.7e-07 Score=94.73 Aligned_cols=128 Identities=10% Similarity=0.035 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 658 LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD----------------KMTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
...+..+...|.+.|++++|+..|+++++. .|+ ...|..++.+|.+.|++++|+..++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 345666777777788888888888887763 333 35788888888888888888888888887
Q ss_pred CCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH-HHHHHH
Q 046719 722 KGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQI-LCSEIS 790 (808)
Q Consensus 722 ~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~-~~~~~~ 790 (808)
+.| +...|..++.+|...|++++|+..|+++++..+. +..++..++.++.+.|+.++|.+ .+.+|.
T Consensus 346 --~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 346 --LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp --HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred --cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 5777888888888888888888888888887766 67788888888888888887764 344444
No 169
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.47 E-value=1.3e-06 Score=79.55 Aligned_cols=118 Identities=8% Similarity=0.090 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--hHHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFG-HLREGKL--SEVKEL 715 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~-~~~~g~~--~~A~~~ 715 (808)
+++|.+.+++.++.. +.+...+..++..|...|++++|+..|+++++.. +.+...+..++.+ +...|++ ++|...
T Consensus 26 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 26 PEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAM 103 (177)
T ss_dssp -CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 556666676666653 4567788889999999999999999999998842 2355678888888 7788998 999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 716 VNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 716 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
++++++. .| +...+..++.++...|++++|...++++++..+.
T Consensus 104 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 104 IDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 9999884 45 5778889999999999999999999999988665
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.46 E-value=9.4e-07 Score=78.87 Aligned_cols=136 Identities=14% Similarity=0.098 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----
Q 046719 658 LLVYNALIHCYAEHGDVQKALVLHSEMVDQGIR-PD----KMTYNSLIFGHLREGKLSEVKELVNDMKVKGL-IPK---- 727 (808)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-pd----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~---- 727 (808)
..++..+...+...|++++|+..+++..+..-. ++ ..++..++..+...|++++|..+++++.+... .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 346778888899999999999999998763100 11 13678899999999999999999999765210 112
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCC----C-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 728 ADTYNILVKGYCNLKDFGGAYIWYREMFENGF----I-PSFCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 728 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
...+..++.++...|++++|...++++++... . .....+..++.++...|++++|...+++.++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999886421 1 124577889999999999999999999988643
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.45 E-value=1.9e-06 Score=74.43 Aligned_cols=102 Identities=15% Similarity=-0.028 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 046719 691 PDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNEL 769 (808)
Q Consensus 691 pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 769 (808)
.+...+..++..+...|++++|+..++++++. .| +...|..++.++...|++++|+..++++++.++. +...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 35668889999999999999999999999884 45 5788999999999999999999999999998777 88999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 770 TNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 770 ~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
+.++...|++++|...+++++...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999999987766
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.45 E-value=1.5e-06 Score=71.73 Aligned_cols=101 Identities=9% Similarity=-0.069 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC---CHHHHHH
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP---KADTYNI 733 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~ 733 (808)
+...+..++..+...|++++|+..++++++.. +.+...+..++.++...|++++|...++++.+. .| +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHH
Confidence 44567778889999999999999999999852 335668889999999999999999999999884 44 4788899
Q ss_pred HHHHHHcc-CChhHHHHHHHHHHHCCCC
Q 046719 734 LVKGYCNL-KDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 734 l~~~~~~~-g~~~~A~~~~~~~~~~~~~ 760 (808)
++.++... |++++|.+.++++++..+.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999999 9999999999999987665
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.44 E-value=3.7e-06 Score=71.59 Aligned_cols=101 Identities=11% Similarity=-0.064 Sum_probs=83.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHH
Q 046719 661 YNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK----MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK----ADTYN 732 (808)
Q Consensus 661 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~ 732 (808)
+..++..+...|++++|++.|+++++. .|+. ..+..++.++...|++++|...++++.+. .|+ ...+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 80 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHH
Confidence 345667788999999999999999984 3433 37788999999999999999999999874 453 67788
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHH
Q 046719 733 ILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIY 766 (808)
Q Consensus 733 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 766 (808)
.++.++...|++++|...++++++..|. +....
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 113 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPG-SDAAR 113 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-SHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-ChHHH
Confidence 9999999999999999999999987655 44443
No 174
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.44 E-value=2.9e-07 Score=85.71 Aligned_cols=130 Identities=8% Similarity=-0.082 Sum_probs=100.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CH-------------
Q 046719 664 LIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KA------------- 728 (808)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~------------- 728 (808)
.+......|++++|.+.++...+. .+ ....+..++..+...|++++|+..++++++. .| +.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKN 85 (198)
T ss_dssp ------------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHH
Confidence 334455567888887777654431 22 3346788999999999999999999999873 33 22
Q ss_pred ---HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 729 ---DTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 729 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
..+..++.++...|++++|+..++++++..+. +...+..++.+|...|++++|...+++++...|++..
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 78889999999999999999999999998766 8899999999999999999999999999999887754
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.44 E-value=2.3e-07 Score=77.65 Aligned_cols=88 Identities=11% Similarity=0.078 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHH
Q 046719 671 HGDVQKALVLHSEMVDQGI-RPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 671 ~g~~~~A~~~~~~~~~~g~-~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A 747 (808)
.|++++|+..|+++++.+. .|+ ...+..++.++...|++++|+..++++++. .| +...+..++.++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 4666677777777766321 132 235666667777777777777777776663 34 355666666677777777777
Q ss_pred HHHHHHHHHCCCC
Q 046719 748 YIWYREMFENGFI 760 (808)
Q Consensus 748 ~~~~~~~~~~~~~ 760 (808)
+..++++++..+.
T Consensus 81 ~~~~~~al~~~p~ 93 (117)
T 3k9i_A 81 VELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCC
Confidence 7777776665443
No 176
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.43 E-value=1.3e-06 Score=78.09 Aligned_cols=101 Identities=13% Similarity=-0.054 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHC-------CC---------CC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 696 YNSLIFGHLREGKLSEVKELVNDMKVK-------GL---------IP-KADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 696 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~---------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
+...+..+.+.|++++|+..|+++++. +- .| +...|..++.+|.+.|++++|+..++++++.+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 556778888888888888888888763 00 22 23567888888888888999988888888887
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 046719 759 FIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAW 797 (808)
Q Consensus 759 ~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 797 (808)
|. +...+..++.+|...|++++|...+++++...|++.
T Consensus 94 p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 94 ET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred Cc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 66 788888888888888899999988888888888766
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.42 E-value=1.6e-06 Score=73.97 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC--CCC----HHHHH
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGL--IPK----ADTYN 732 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p~----~~~~~ 732 (808)
..+..++..+...|++++|+..|+++.+.. +.+...+..++..+...|++++|..+++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456667777788888888888888887742 33555777788888888888888888888765321 112 56677
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 733 ILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGL 773 (808)
Q Consensus 733 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 773 (808)
.++.++...|++++|...++++++.. |+......+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 77888888888888888888887764 3455555555444
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.40 E-value=1.2e-06 Score=73.54 Aligned_cols=97 Identities=12% Similarity=0.037 Sum_probs=81.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKG 737 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~ 737 (808)
.+..++..+.+.|++++|+..|+++++. .| +...|..++.++...|++++|+..++++++ +.| +...+..++.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 3456677888999999999999999984 55 566888999999999999999999999988 556 57788899999
Q ss_pred HHccCChhHHHHHHHHHHHCCCC
Q 046719 738 YCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+...|++++|+..++++++..|.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC----
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC
Confidence 99999999999999999976544
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.40 E-value=5.5e-07 Score=96.25 Aligned_cols=120 Identities=13% Similarity=0.043 Sum_probs=97.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc
Q 046719 663 ALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCN 740 (808)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 740 (808)
.++..+.+.|++++|++.|+++++. .| +...|..++.++.+.|++++|++.++++++ +.| +...|..++.+|..
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 3445667889999999999999984 55 466899999999999999999999999998 455 57788899999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 046719 741 LKDFGGAYIWYREMFENGFIPSFCIYNELTNG--LKQEGKLKEAQILCS 787 (808)
Q Consensus 741 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--l~~~g~~~~A~~~~~ 787 (808)
.|++++|++.++++++..+. +...+..++.+ +.+.|++++|+..++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999998766 66677777777 888899999999988
No 180
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.40 E-value=6.1e-06 Score=76.87 Aligned_cols=132 Identities=7% Similarity=-0.112 Sum_probs=61.6
Q ss_pred hhhHHHHHHHHHccCCHhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc--
Q 046719 204 VFVYNVLISGFCKEKKIRDAEKLFDEMCQR----KLV-PTRVTYNTLVDGYCKVGEFEKVSALRERMKRD----KVEV-- 272 (808)
Q Consensus 204 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-- 272 (808)
..+++.+...+...|++++|...|++..+. +.. ....++..+...|...|++++|...+++.... +..+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344444444555555555555555444331 000 12234444555555555555555555544332 1011
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCC---CCCC--HhhHHHHHHHHHhCCChHHHHHHHHHH
Q 046719 273 SLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHG---FDPD--GFTYSMLFDGYSKCGDGEGVMALYEEL 335 (808)
Q Consensus 273 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~ 335 (808)
....+..+...+...|++++|...+++..+.. ..+. ..++..+...+...|++++|...+++.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 12334455555555666666666655554210 0011 123455556666666666666666554
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.38 E-value=2.4e-06 Score=87.74 Aligned_cols=123 Identities=11% Similarity=0.058 Sum_probs=102.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC--------------CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 046719 660 VYNALIHCYAEHGDVQKALVLHSEMVDQ--------------GIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGL 724 (808)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 724 (808)
.+..+...+.+.|++++|++.|+++++. ...| +...|..++.+|.+.|++++|+..++++++ +
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~ 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE--I 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--h
Confidence 4666777888889999999888888761 0223 345788999999999999999999999998 4
Q ss_pred CC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 046719 725 IP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQIL 785 (808)
Q Consensus 725 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~ 785 (808)
.| +...|..++.+|...|++++|+..|+++++..+. +...+..+..++...++.+++.+.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 5788999999999999999999999999998776 788889999999888888877653
No 182
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.38 E-value=2.6e-06 Score=72.62 Aligned_cols=101 Identities=12% Similarity=0.051 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC--CC----HHHHH
Q 046719 694 MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFI--PS----FCIYN 767 (808)
Q Consensus 694 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~ 767 (808)
..+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|..+++++++..+. ++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 467889999999999999999999998842 336788899999999999999999999999987553 12 77899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 768 ELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 768 ~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
.++.++...|++++|...+++++...++
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999998874
No 183
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.37 E-value=1.1e-06 Score=75.91 Aligned_cols=98 Identities=8% Similarity=-0.075 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-
Q 046719 659 LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD--------K-----MTYNSLIFGHLREGKLSEVKELVNDMKVKGL- 724 (808)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd--------~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~- 724 (808)
..+......+.+.|++++|+..|++.++ +.|+ . ..|..++.++.+.|++++|+..++++++ +
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~ 87 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH--YF 87 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hh
Confidence 3456677788889999999999999998 4555 2 2899999999999999999999999988 5
Q ss_pred ------CCC-HHHH----HHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 725 ------IPK-ADTY----NILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 725 ------~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
.|+ ...| ...+.++...|++++|+..|+++++..|.
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 775 5678 89999999999999999999999987554
No 184
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.36 E-value=7.4e-06 Score=83.19 Aligned_cols=131 Identities=11% Similarity=-0.025 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC--------------HhhHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 046719 133 SLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPD--------------KFTYGKAVQAAVKIGDLKRACEIFDGMEKS 198 (808)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 198 (808)
+...+..+...|.+.|++++|+..|++++...+... ...|..+..++.+.|++++|+..|+++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788899999999999999999999988765532 567777777888888888888888887775
Q ss_pred CCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHH
Q 046719 199 RTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKV-SALRERM 265 (808)
Q Consensus 199 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~~ 265 (808)
.+ .+...|..+..+|...|++++|+..|++..+..+. +..++..+...+.+.|+.+++ ...++.|
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 36677777778888888888888888887766432 566777777777777777776 3455554
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.30 E-value=9.7e-07 Score=73.79 Aligned_cols=93 Identities=15% Similarity=-0.007 Sum_probs=73.0
Q ss_pred hcCCHhHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 046719 705 REGKLSEVKELVNDMKVKGL-IP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEA 782 (808)
Q Consensus 705 ~~g~~~~A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A 782 (808)
..|++++|+..++++++.+. .| +...+..++.++...|++++|+..++++++..|. +...+..++.++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 35788889999999887421 23 3567888888999999999999999999988777 788888999999999999999
Q ss_pred HHHHHHHHHcCCCCCc
Q 046719 783 QILCSEISIVGKDAWT 798 (808)
Q Consensus 783 ~~~~~~~~~~~~~~~~ 798 (808)
...+++++...|++..
T Consensus 81 ~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 81 VELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHhCCCcHH
Confidence 9999999888877654
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.29 E-value=1.2e-05 Score=87.27 Aligned_cols=155 Identities=11% Similarity=0.024 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGD----------VQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREG 707 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g 707 (808)
.++|.+.+++++..+ +.+...|+.-..++...|+ ++++++.++++++. .| +..+|+.-.+++.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 678888888888864 4456778777777777777 99999999999984 45 5569999999999999
Q ss_pred --CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------
Q 046719 708 --KLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLK-DFGGAYIWYREMFENGFIPSFCIYNELTNGLKQE-------- 776 (808)
Q Consensus 708 --~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------- 776 (808)
+++++++.++++.+.. .-|...|.....++.+.| .+++++++++++++.+|. +..+|+..+..+...
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 7799999999999843 337889999999999999 899999999999999888 889999888888774
Q ss_pred ------CChhHHHHHHHHHHHcCCCCCc
Q 046719 777 ------GKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 777 ------g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+++++|++++++++...|++..
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~s 227 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQS 227 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCcc
Confidence 6689999999999999998765
No 187
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.18 E-value=2.6e-06 Score=73.25 Aligned_cols=88 Identities=10% Similarity=0.052 Sum_probs=59.0
Q ss_pred HccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH----------hHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKL----------SEVKELVNDMKVKGLIP-KADTYNILVK 736 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 736 (808)
.+.+.+++|++.+++.++. .| +...|+.++.++...+++ ++|+..|+++++ +.| +...|..++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence 4556778888888888773 44 455777777777777664 377777777766 455 3566777777
Q ss_pred HHHccC-----------ChhHHHHHHHHHHHCCCC
Q 046719 737 GYCNLK-----------DFGGAYIWYREMFENGFI 760 (808)
Q Consensus 737 ~~~~~g-----------~~~~A~~~~~~~~~~~~~ 760 (808)
+|...| ++++|++.|+++++.+|.
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 776653 677777777777766443
No 188
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=0.00011 Score=77.78 Aligned_cols=196 Identities=14% Similarity=0.110 Sum_probs=100.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCcC
Q 046719 561 INGLCKKGRVMEAEDMLPQITSSGLNPDV----------------ITYNSLISGYSSLGSSQKCLELYENMKKLG-IKPS 623 (808)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~ 623 (808)
...+.+.|++++|++.|..+.+....... .++..++..|...|++++|.+.+..+.+.. ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45677888999999999888875322110 135667777888888888888877765421 0111
Q ss_pred HHh---HHHHHHH-HHHcC-HHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CC--
Q 046719 624 LRT---YHPLLSG-CIREG-IVAVEKLFNEMLQ----INLVP-DLLVYNALIHCYAEHGDVQKALVLHSEMVDQ--GI-- 689 (808)
Q Consensus 624 ~~~---~~~l~~~-~~~~~-~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~-- 689 (808)
..+ ....+.. +...| .+.+.+++.+... .+..+ ...++..++..|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 111 1111111 12223 5555555555443 11111 1334455555666666666666666555432 11
Q ss_pred CCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 690 RPDK-MTYNSLIFGHLREGKLSEVKELVNDMKVK--GLI-P-K--ADTYNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 690 ~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~-p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
.+.. .++..++..|...|++++|..+++++... .+. | . ...+..++..+...|++++|...+.++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1111 24555556666666666666665554321 011 1 0 12334445555555666666666555554
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.17 E-value=6.1e-05 Score=81.88 Aligned_cols=138 Identities=7% Similarity=-0.004 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-CHhHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHG--DVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREG-KLSEVKE 714 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g-~~~~A~~ 714 (808)
++++.+.++++++.+ +.+..+|+.-..++.+.| +++++++.++++++. .| |...|+.-.+++.+.| .++++++
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHH
Confidence 677888888888764 567788998889999999 779999999999995 44 6679999999999999 8999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcc--------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 046719 715 LVNDMKVKGLIPKADTYNILVKGYCNL--------------KDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLK 780 (808)
Q Consensus 715 ~~~~~~~~g~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 780 (808)
+++++++.. ..|...|+....++.+. +.+++|+++++++++.+|. +...|+.+...+.+.|+.+
T Consensus 166 ~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 166 FTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred HHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 999998842 33788898888887764 5679999999999999888 8899999999999998866
Q ss_pred H
Q 046719 781 E 781 (808)
Q Consensus 781 ~ 781 (808)
+
T Consensus 244 ~ 244 (567)
T 1dce_A 244 V 244 (567)
T ss_dssp C
T ss_pred c
Confidence 6
No 190
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.16 E-value=5e-05 Score=65.24 Aligned_cols=110 Identities=14% Similarity=0.000 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHH
Q 046719 673 DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCN----LKDFGGAY 748 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~ 748 (808)
++++|++.|++..+.| .|+.. |+..|...+.+++|++++++..+.| ++..+..|+..|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666654 22222 5555555555666666666665543 44555556666655 56666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 046719 749 IWYREMFENGFIPSFCIYNELTNGLKQ----EGKLKEAQILCSEISIVG 793 (808)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~ 793 (808)
++|+++.+.| ++..+..|+.+|.. .++.++|..++++..+.+
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666552 44555666666666 566666666666666553
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.4e-06 Score=71.90 Aligned_cols=94 Identities=10% Similarity=0.033 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC------HH
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPS------FC 764 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~ 764 (808)
+...+..++..+...|++++|+..++++++ ..| +...|..++.++...|++++|+..++++++..+. + ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHH
Confidence 344666777777778888888888887776 334 5667777788888888888888888888776554 3 55
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHH
Q 046719 765 IYNELTNGLKQEGKLKEAQILCSE 788 (808)
Q Consensus 765 ~~~~l~~~l~~~g~~~~A~~~~~~ 788 (808)
.+..++.++...|+.++|...+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 666777777777776666655443
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=6.2e-05 Score=79.80 Aligned_cols=197 Identities=10% Similarity=-0.034 Sum_probs=144.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCC
Q 046719 525 LIDGSCTMGRIKDAFKFFDEMVKREMGPT----------------LVTFNALINGLCKKGRVMEAEDMLPQITSSG-LNP 587 (808)
Q Consensus 525 li~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 587 (808)
-...+.+.|++++|++.|..+++...... ...+..++..|...|++++|.+.+..+...- ..+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 35667889999999999999998632211 1246788999999999999999999876521 111
Q ss_pred CH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCcC-HHhHHHHHHHHHHcC-HHHHHHHHHHHHHC--CC-
Q 046719 588 DV----ITYNSLISGYSSLGSSQKCLELYENMKKL----GIKPS-LRTYHPLLSGCIREG-IVAVEKLFNEMLQI--NL- 654 (808)
Q Consensus 588 ~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~--~~- 654 (808)
+. ...+.+...+...|++++|..++++.... +..+. ..++..+...+...| +++|..++.++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 22 23344444556789999999999887643 22233 456777888899999 99999999988752 11
Q ss_pred -CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 655 -VP-DLLVYNALIHCYAEHGDVQKALVLHSEMVDQ--GIR-P-D--KMTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 655 -~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~-p-d--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
.+ ....+..++..|...|++++|...+++.... .+. | . ...+..++..+...|++++|...+.++.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12 2467888999999999999999999998763 122 2 1 13566778888899999999999888754
No 193
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.13 E-value=1e-05 Score=86.40 Aligned_cols=109 Identities=13% Similarity=0.073 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVN 717 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~ 717 (808)
+++|.+.|++.++.. +.+...|..+..+|.+.|++++|++.++++++. .| +...|..++.+|...|++++|.+.++
T Consensus 22 ~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 98 (477)
T 1wao_1 22 YENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAALRDYE 98 (477)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555555432 334666777777777777777777777777773 44 34467777777777777777777777
Q ss_pred HHHHCCCCC-CHHHHHHHHHH--HHccCChhHHHHHHH
Q 046719 718 DMKVKGLIP-KADTYNILVKG--YCNLKDFGGAYIWYR 752 (808)
Q Consensus 718 ~~~~~g~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 752 (808)
++++. .| +...+..+..+ +.+.|++++|++.++
T Consensus 99 ~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 99 TVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77663 34 33444455544 666777777777777
No 194
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.12 E-value=1.5e-05 Score=84.66 Aligned_cols=123 Identities=8% Similarity=-0.062 Sum_probs=101.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----------------HHHHHH
Q 046719 671 HGDVQKALVLHSEMVDQGIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK----------------ADTYNI 733 (808)
Q Consensus 671 ~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----------------~~~~~~ 733 (808)
.+++++|+..|+...+ ..|+ ...|..++..+.+.|++++|+..|+++++ +.|+ ...|..
T Consensus 247 l~~~~~A~~~~~~~~~--~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~n 322 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTK--EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLN 322 (457)
T ss_dssp EEEEECCCCGGGSCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHH
Confidence 3455666666655544 2343 34788999999999999999999999987 3443 478899
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 734 LVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 734 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
++.+|.+.|++++|+..++++++..+. +...+..++.+|...|++++|+..++++++..|++..
T Consensus 323 la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~ 386 (457)
T 1kt0_A 323 LAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999998877 8999999999999999999999999999999998776
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.08 E-value=1.1e-05 Score=67.07 Aligned_cols=79 Identities=11% Similarity=-0.035 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHH
Q 046719 676 KALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYRE 753 (808)
Q Consensus 676 ~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 753 (808)
+|+..|+++++. .| +...+..++..+...|++++|+..++++++. .| +...|..++.++...|++++|...|++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 466777777763 34 4557777778888888888888888887763 34 466677777788888888888888887
Q ss_pred HHHCC
Q 046719 754 MFENG 758 (808)
Q Consensus 754 ~~~~~ 758 (808)
+++..
T Consensus 79 al~~~ 83 (115)
T 2kat_A 79 GLAAA 83 (115)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77653
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.07 E-value=8.8e-06 Score=82.63 Aligned_cols=102 Identities=10% Similarity=-0.082 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHHccCChhHHHHHHHHHH
Q 046719 694 MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKAD------------------TYNILVKGYCNLKDFGGAYIWYREMF 755 (808)
Q Consensus 694 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~~ 755 (808)
..+..++..+.+.|++++|+..|+++++ +.|+.. .|..++.+|.+.|++++|+..+++++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3577889999999999999999999987 456543 78899999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 756 ENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 756 ~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+..+. +...+..++.+|...|++++|...+++++...|++..
T Consensus 258 ~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~ 299 (338)
T 2if4_A 258 TEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299 (338)
T ss_dssp HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence 98776 8999999999999999999999999999998887655
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.05 E-value=2e-05 Score=80.94 Aligned_cols=103 Identities=9% Similarity=-0.038 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHC--------------CCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVK--------------GLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGF 759 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 759 (808)
.+..++..+.+.|++++|+..++++++. ...| +...|..++.+|.+.|++++|+..++++++..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 5778899999999999999999998761 0123 457788999999999999999999999999877
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 760 IPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 760 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
. +...+..++.+|...|++++|+..++++++..|++..
T Consensus 305 ~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~ 342 (370)
T 1ihg_A 305 S-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342 (370)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred h-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 6 8999999999999999999999999999999988654
No 198
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.03 E-value=3.2e-05 Score=68.61 Aligned_cols=137 Identities=12% Similarity=0.011 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 046719 590 ITYNSLISGYSSLGSSQKCLELYENMKKLGIKPSLRTYHPLLSGCIREGIVAVEKLFNEMLQINLVP--DLLVYNALIHC 667 (808)
Q Consensus 590 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 667 (808)
.++..+...+...|++++|+..+++..+.. + +.+ .+ ....+..+...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~----------------------------~~~-~~~~~~~~~~~l~~~ 58 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--K----------------------------EFG-DKAAERIAYSNLGNA 58 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--H----------------------------HHT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--H----------------------------HhC-CchHHHHHHHHHHHH
Confidence 355666666667777777777776665420 0 000 11 12467778888
Q ss_pred HHccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCC-CHHHHHHHHHH
Q 046719 668 YAEHGDVQKALVLHSEMVDQ----GIRPD-KMTYNSLIFGHLREGKLSEVKELVNDMKVK----GLIP-KADTYNILVKG 737 (808)
Q Consensus 668 ~~~~g~~~~A~~~~~~~~~~----g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~ 737 (808)
+...|++++|.+.+++..+. +..+. ..++..++..+...|++++|.+.+++..+. +..+ ....+..++.+
T Consensus 59 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 138 (164)
T 3ro3_A 59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA 138 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHH
Confidence 89999999999999988753 11111 336778899999999999999999987642 1111 13567788999
Q ss_pred HHccCChhHHHHHHHHHHHC
Q 046719 738 YCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 738 ~~~~g~~~~A~~~~~~~~~~ 757 (808)
+...|++++|.+.++++++.
T Consensus 139 ~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 139 YTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHH
Confidence 99999999999999998864
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.02 E-value=0.0002 Score=61.44 Aligned_cols=111 Identities=12% Similarity=-0.072 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHH
Q 046719 639 IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLR----EGKLSEVKE 714 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~----~g~~~~A~~ 714 (808)
.++|.+.|++..+.| .++.. |...|...+.+++|++.|++..+.| +...+..|+..|.. .+++++|.+
T Consensus 11 ~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 11 LKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 677888888888876 44433 7777777788888999999998865 66778888888888 789999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCC
Q 046719 715 LVNDMKVKGLIPKADTYNILVKGYCN----LKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 715 ~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 760 (808)
++++..+.| ++..+..|+..|.. .+++++|.++|+++.+.|..
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 999998864 57778888888888 88999999999999988643
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.96 E-value=1.8e-05 Score=63.65 Aligned_cols=64 Identities=27% Similarity=0.223 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
+...+..++.++...|++++|+..++++++ ..| +...|..++.+|...|++++|+..++++++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344666677777777777777777777666 334 3556666777777777777777777776654
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.92 E-value=5e-05 Score=80.34 Aligned_cols=127 Identities=6% Similarity=-0.121 Sum_probs=90.0
Q ss_pred HHHccCCHHHHHHHHHHHHHC---CC---CCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHC---CCCCC----HHHHH
Q 046719 667 CYAEHGDVQKALVLHSEMVDQ---GI---RPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVK---GLIPK----ADTYN 732 (808)
Q Consensus 667 ~~~~~g~~~~A~~~~~~~~~~---g~---~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~----~~~~~ 732 (808)
.+...|++++|+.++++.++. -+ .|+.. +++.|+.+|...|++++|..+++++++- -+.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345678888888888887753 11 23333 7888888888888888888888886531 12232 35577
Q ss_pred HHHHHHHccCChhHHHHHHHHHHH-----CCCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 733 ILVKGYCNLKDFGGAYIWYREMFE-----NGFI-PS-FCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 733 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
.|+..|..+|++++|..+++++++ .|++ |+ ......+..++.+.|++++|..++.++.+..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888874 4654 11 2344577778888888889988888887643
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.91 E-value=8.8e-05 Score=58.07 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046719 694 MTYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNG 772 (808)
Q Consensus 694 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 772 (808)
..+..++..+...|++++|+..++++++. .| +...+..++.++...|++++|...++++++..+. +...+..++.+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 35666777777777777777777777663 33 4566777777777777777777777777776655 66667777766
Q ss_pred HHhcC
Q 046719 773 LKQEG 777 (808)
Q Consensus 773 l~~~g 777 (808)
+.+.|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 65543
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.87 E-value=3.9e-05 Score=63.58 Aligned_cols=81 Identities=15% Similarity=0.065 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 046719 711 EVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEI 789 (808)
Q Consensus 711 ~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 789 (808)
+|+..++++++ ..| +...+..++.++...|++++|+..++++++.++. +...+..++.++...|++++|...++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555554 223 3455555555555556666666666555555444 4555555555555556666666655555
Q ss_pred HHcCC
Q 046719 790 SIVGK 794 (808)
Q Consensus 790 ~~~~~ 794 (808)
+...|
T Consensus 80 l~~~~ 84 (115)
T 2kat_A 80 LAAAQ 84 (115)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 55443
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.86 E-value=2e-05 Score=67.77 Aligned_cols=90 Identities=11% Similarity=-0.048 Sum_probs=56.9
Q ss_pred cCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCh----------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046719 706 EGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDF----------GGAYIWYREMFENGFIPSFCIYNELTNGLK 774 (808)
Q Consensus 706 ~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 774 (808)
.+.+++|++.+++.++ +.| +...|..++.++...+++ ++|+..|+++++.+|. +..+|+.++.+|.
T Consensus 15 ~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3456666666666666 334 456666666666666554 3677777777666655 6666666666666
Q ss_pred hcC-----------ChhHHHHHHHHHHHcCCCCCc
Q 046719 775 QEG-----------KLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 775 ~~g-----------~~~~A~~~~~~~~~~~~~~~~ 798 (808)
..| ++++|+..|+++++.+|++..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 653 667777777777766666543
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.84 E-value=2.2e-05 Score=64.54 Aligned_cols=93 Identities=8% Similarity=0.070 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-------H
Q 046719 657 DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRP-DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-------A 728 (808)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~ 728 (808)
+...+..+...+...|++++|++.|++.++. .| +...+..++.++...|++++|+..++++++ +.|+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHH
Confidence 4567788889999999999999999999984 44 566899999999999999999999999988 5564 5
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHH
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYRE 753 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~ 753 (808)
..+..++.++...|++++|+..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 6677888888888888887766554
No 206
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.79 E-value=9.3e-05 Score=62.80 Aligned_cols=88 Identities=11% Similarity=-0.020 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 046719 710 SEVKELVNDMKVKGLIPKADTYNILVKGYCNLK---DFGGAYIWYREMFENG-FIPSFCIYNELTNGLKQEGKLKEAQIL 785 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~g~~~~A~~~ 785 (808)
..+.+.|.+..+.|. ++..+...+++++++.+ +.++++.++++..+.+ |.-...+++.|+-++.+.|++++|+++
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 444555555554432 56666666677777766 5557777777766654 212456666777777777777777777
Q ss_pred HHHHHHcCCCCCc
Q 046719 786 CSEISIVGKDAWT 798 (808)
Q Consensus 786 ~~~~~~~~~~~~~ 798 (808)
++++++..|++..
T Consensus 94 ~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 94 VRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHCTTCHH
T ss_pred HHHHHhcCCCCHH
Confidence 7777777776655
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.66 E-value=5.9e-05 Score=60.36 Aligned_cols=88 Identities=14% Similarity=0.140 Sum_probs=61.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046719 698 SLIFGHLREGKLSEVKELVNDMKVKGLIP-KAD-TYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQ 775 (808)
Q Consensus 698 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 775 (808)
..+..+...|++++|+..++++++ ..| +.. .+..++.++...|++++|+..|+++++.++. +...+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~------- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR------- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH-------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH-------
Confidence 356667778888888888888777 344 456 7778888888888888888888888887665 4443321
Q ss_pred cCChhHHHHHHHHHHHcCCCC
Q 046719 776 EGKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 776 ~g~~~~A~~~~~~~~~~~~~~ 796 (808)
+...+|...+++.....|++
T Consensus 75 -~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHCC
T ss_pred -HHHHHHHHHHHHHhccCccc
Confidence 45667777777666655544
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.64 E-value=0.00026 Score=55.24 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 727 KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 727 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
+...+..++..+...|++++|+.+++++++..+. +...+..++.++...|++++|...+++++...|++..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 78 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHH
Confidence 3567888999999999999999999999998766 7889999999999999999999999999999887654
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.61 E-value=0.00019 Score=57.44 Aligned_cols=65 Identities=14% Similarity=0.015 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 728 ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 728 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
...+..++.++...|++++|+..|+++++.+|. +...|..++.+|...|++++|+..+++++...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 344445555555555555555555555554443 44445555555555555555555555554433
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.57 E-value=0.00068 Score=52.94 Aligned_cols=69 Identities=7% Similarity=-0.091 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHccCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 726 PKADTYNILVKGYCNLKD---FGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 726 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
+|+..+..++.++...++ .++|..+++++++.+|. ++.....++..+.+.|++++|+..++++++..|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456667777777754444 67778888888777766 7777777778888888888888888888777776
No 211
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.55 E-value=0.00038 Score=73.64 Aligned_cols=135 Identities=10% Similarity=0.007 Sum_probs=81.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHhcCCCCCCChhhHHhhhhccCCCCCccHHHHHHHHHHcCCChhHHHHHHHHHHh----
Q 046719 52 KIRILFQNNRTEAAQSLIKSIVLSNASPFTSPHELFSLFSVSSPYYKPTFTNILLSILSSAKLPSEALQLYASTKA---- 127 (808)
Q Consensus 52 ~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 127 (808)
.+..+..+|++++|..+++..+......+ ...+|......+.|..+|...|++++|..++.+.+.
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~l-----------g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~ 383 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVF-----------ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMK 383 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTB-----------CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 34456789999999999887764322111 111222223346677778888888888887776553
Q ss_pred -CCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCC-cCH-hhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 046719 128 -DGT--RLSLDSINVLLECLVRCNQYDRALDLFDEIVC-----MGFR-PDK-FTYGKAVQAAVKIGDLKRACEIFDGMEK 197 (808)
Q Consensus 128 -~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~-~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 197 (808)
.|. +....+++.|...|..+|++++|..+|+++++ .|.. |++ .+.+.+-.++...|.+++|..+|..+.+
T Consensus 384 ~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 384 LYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 22234677778888888888888887777664 2333 221 2334444555556666666666666543
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.41 E-value=0.0011 Score=65.63 Aligned_cols=65 Identities=20% Similarity=0.007 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 046719 692 DKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENG 758 (808)
Q Consensus 692 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 758 (808)
+..+|..+...+...|++++|...+++++.. .|+...|..++..+.-.|++++|.+.|++++..+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3345555555555556666666666665553 3555555555555555666666666666655553
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.34 E-value=0.00068 Score=53.94 Aligned_cols=65 Identities=15% Similarity=0.097 Sum_probs=59.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 733 ILVKGYCNLKDFGGAYIWYREMFENGFIPSFC-IYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 733 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
..+..+...|++++|+..++++++..+. +.. .+..++.++...|++++|...++++++..|++..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 70 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 4567788999999999999999998776 778 9999999999999999999999999999998876
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.26 E-value=0.0044 Score=61.46 Aligned_cols=67 Identities=13% Similarity=-0.036 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046719 727 KADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKD 795 (808)
Q Consensus 727 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 795 (808)
++.++..+...+...|++++|+..++++++.+ |+...|..++..+.-.|++++|...+++++..+|.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 34444444444444455555555555555543 34444445555555555555555555555555443
No 215
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.24 E-value=0.0014 Score=53.37 Aligned_cols=90 Identities=10% Similarity=-0.035 Sum_probs=64.3
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhH---HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHH
Q 046719 708 KLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGG---AYIWYREMFENG-FIPSFCIYNELTNGLKQEGKLKEAQ 783 (808)
Q Consensus 708 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~g~~~~A~ 783 (808)
.+..+.+.+.+....| .++..+-..+++++.+..+..+ ++.++++..+.+ +.-.....+.|+-++++.|++++|+
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3445555555555444 3677777777888888776665 788888877654 3225677778888888888888888
Q ss_pred HHHHHHHHcCCCCCc
Q 046719 784 ILCSEISIVGKDAWT 798 (808)
Q Consensus 784 ~~~~~~~~~~~~~~~ 798 (808)
++++.+++..|++..
T Consensus 95 ~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhCCCCHH
Confidence 888888888888766
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.20 E-value=0.0017 Score=52.15 Aligned_cols=73 Identities=11% Similarity=-0.032 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHH
Q 046719 694 MTYNSLIFGHLREGKLSEVKELVNDMKVKG------LIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYN 767 (808)
Q Consensus 694 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 767 (808)
.-+..|+..+...|++..|...++.+.+.- -.+....+..++.++.+.|++++|+.+++++++..|. +..+..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~ 84 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHh
Confidence 334567777777777777777777765421 1123556677777777777777777777777776555 444433
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.17 E-value=0.017 Score=54.73 Aligned_cols=105 Identities=14% Similarity=0.124 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHc-cC
Q 046719 674 VQKALVLHSEMVDQGIRPD---KMTYNSLIFGHLRE-----GKLSEVKELVNDMKVKGLIP--KADTYNILVKGYCN-LK 742 (808)
Q Consensus 674 ~~~A~~~~~~~~~~g~~pd---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~-~g 742 (808)
..+|...+++.++ +.|+ ...|..|+..|.+. |+.++|.++|+++++ +.| +..++..++..++. .|
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 5677777788877 5676 33677777777773 788888888888887 556 36777777777777 48
Q ss_pred ChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 046719 743 DFGGAYIWYREMFENGFI--PSFCIYNELTNGLKQEGKLKEAQILCSEIS 790 (808)
Q Consensus 743 ~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 790 (808)
+.++|..++++++...+. |+.... ..++.++|..+++++-
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~la--------n~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLL--------VILSQKRARWLKAHVQ 296 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHH--------HHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHH--------HHHHHHHHHHHHHHhH
Confidence 888888888888877666 443322 2234456666666543
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.08 E-value=0.0017 Score=67.50 Aligned_cols=87 Identities=7% Similarity=-0.087 Sum_probs=61.7
Q ss_pred ccCCHHHHHHHHHHHHHC---CCC---CCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHH-----CCC-CCC-HHHHHHHH
Q 046719 670 EHGDVQKALVLHSEMVDQ---GIR---PDK-MTYNSLIFGHLREGKLSEVKELVNDMKV-----KGL-IPK-ADTYNILV 735 (808)
Q Consensus 670 ~~g~~~~A~~~~~~~~~~---g~~---pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~-~p~-~~~~~~l~ 735 (808)
..|++++|+.++++.++. -+. |+. .+++.|+.+|...|++++|..+++++++ .|- .|+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888888888887752 122 333 3788888888888888888888888753 221 122 34577888
Q ss_pred HHHHccCChhHHHHHHHHHHH
Q 046719 736 KGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 736 ~~~~~~g~~~~A~~~~~~~~~ 756 (808)
..|..+|++++|..+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888888764
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.99 E-value=0.003 Score=65.59 Aligned_cols=94 Identities=11% Similarity=0.002 Sum_probs=74.9
Q ss_pred hcCCHhHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHH-----CCCC-CC-HHHHHHHH
Q 046719 705 REGKLSEVKELVNDMKV---KGLIPK----ADTYNILVKGYCNLKDFGGAYIWYREMFE-----NGFI-PS-FCIYNELT 770 (808)
Q Consensus 705 ~~g~~~~A~~~~~~~~~---~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~-~~~~~~l~ 770 (808)
..|++++|..++++.++ .-+.|+ ..+++.|+.+|..+|+|++|..+++++++ .|+. |+ ...++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46889999999999764 223343 46688999999999999999999999884 3543 22 35788999
Q ss_pred HHHHhcCChhHHHHHHHHHHH-----cCCCCCc
Q 046719 771 NGLKQEGKLKEAQILCSEISI-----VGKDAWT 798 (808)
Q Consensus 771 ~~l~~~g~~~~A~~~~~~~~~-----~~~~~~~ 798 (808)
..|..+|++++|..+++++++ .|++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 999999999999999999986 4566554
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.93 E-value=0.0065 Score=57.55 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhc-C
Q 046719 639 IVAVEKLFNEMLQINLVPD---LLVYNALIHCYAE-----HGDVQKALVLHSEMVDQGIRPD--KMTYNSLIFGHLRE-G 707 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~g~~pd--~~~~~~l~~~~~~~-g 707 (808)
...|...+++.++. .|+ ...|..++..|.. -|+.++|.++|++.++ +.|+ ..++...+..++.. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 45677777777774 454 4577778877777 3888888888888888 5663 55777777777774 8
Q ss_pred CHhHHHHHHHHHHHCCCC
Q 046719 708 KLSEVKELVNDMKVKGLI 725 (808)
Q Consensus 708 ~~~~A~~~~~~~~~~g~~ 725 (808)
+.++|.+++++.+.....
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 888888888888874433
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.93 E-value=0.0069 Score=51.36 Aligned_cols=86 Identities=19% Similarity=0.174 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChhHH
Q 046719 673 DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREG---KLSEVKELVNDMKVKGLIP--KADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A 747 (808)
....+.+.|.+..+.| .++..+...+++++.+.+ ++++++.+++.+.+.+ .| +...+..++-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455666666666654 356667778888888877 5668888888877643 24 355667777788888888888
Q ss_pred HHHHHHHHHCCCC
Q 046719 748 YIWYREMFENGFI 760 (808)
Q Consensus 748 ~~~~~~~~~~~~~ 760 (808)
.++++.+++..|.
T Consensus 91 ~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCC
Confidence 8888888877654
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.83 E-value=0.0046 Score=64.33 Aligned_cols=92 Identities=12% Similarity=-0.005 Sum_probs=68.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCC---CCCC---H-HHHHHHHHHHHhcCCHhHHHHHHHHHHHC---CCCCC----HHH
Q 046719 665 IHCYAEHGDVQKALVLHSEMVDQG---IRPD---K-MTYNSLIFGHLREGKLSEVKELVNDMKVK---GLIPK----ADT 730 (808)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~~~~~g---~~pd---~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~----~~~ 730 (808)
+..+...|++++|+.++++.++.. +.|+ . .+++.|+.+|...|++++|..+++++++- -..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556789999999999888631 2232 2 37888999999999999999999987531 12232 355
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 731 YNILVKGYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 731 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 756 (808)
++.|+..|..+|++++|..+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 78899999999999999999998874
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.81 E-value=0.0055 Score=47.68 Aligned_cols=68 Identities=12% Similarity=0.005 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 691 PDKMTYNSLIFGHLREGK---LSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 691 pd~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+|...+..++.++...++ .++|..+++++++ ..| +...+..++..+.+.|++++|+.+|+++++.++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 344556666666654443 5677777777766 445 3556666777777777777777777777765443
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.79 E-value=0.0083 Score=62.39 Aligned_cols=99 Identities=12% Similarity=-0.038 Sum_probs=77.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHH-----CCCC-CC-HHH
Q 046719 700 IFGHLREGKLSEVKELVNDMKVK---GLIPK----ADTYNILVKGYCNLKDFGGAYIWYREMFE-----NGFI-PS-FCI 765 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~-~~~ 765 (808)
+..+..+|++++|..+++++++. -+.|+ ..+++.++.+|..+|+|++|..+++++++ .|+. |+ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566789999999999998753 13333 45688999999999999999999999874 3443 22 356
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCc
Q 046719 766 YNELTNGLKQEGKLKEAQILCSEISI-----VGKDAWT 798 (808)
Q Consensus 766 ~~~l~~~l~~~g~~~~A~~~~~~~~~-----~~~~~~~ 798 (808)
++.|+..|..+|++++|..+++++++ .|++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~ 411 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSL 411 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 78999999999999999999999886 4565544
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.71 E-value=0.014 Score=46.75 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 046719 729 DTYNILVKGYCNLKDFGGAYIWYREMFENG------FIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDA 796 (808)
Q Consensus 729 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 796 (808)
..+..++..+.+.|+++.|..+++++++.. ..+...++..|+.++.+.|++++|+.+++++++..|++
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 344455556666666666666666655421 11234555566666666666666666666666655554
No 226
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.60 E-value=0.035 Score=45.93 Aligned_cols=74 Identities=9% Similarity=-0.030 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHHccCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 725 IPKADTYNILVKGYCNLKDF---GGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 725 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
.|+..+-..+++++.+..+. .+++.++++..+.++.-.....+.|+-++++.|++++|+++++.+++..|++-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 46666766777777776643 466777777777655445667777777788888888888888888877777766
No 227
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.54 E-value=0.019 Score=46.81 Aligned_cols=75 Identities=9% Similarity=-0.039 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHHccCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 046719 724 LIPKADTYNILVKGYCNLKDF---GGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVGKDAWT 798 (808)
Q Consensus 724 ~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 798 (808)
-.|+..+-..+++++.+..+. .+++.++++..+.++.-....++.|+-++.+.|++++|+++++.+++..|++-.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 456777777777788776654 467888888887665435677888888888888888888888888888888777
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.21 E-value=0.065 Score=44.60 Aligned_cols=105 Identities=10% Similarity=0.033 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHHccCCH------HHHHHHHHHHHHCCCCCCHH-HHHHHHH------HHHhcCCHhHHHHHHHHHHH
Q 046719 655 VPDLLVYNALIHCYAEHGDV------QKALVLHSEMVDQGIRPDKM-TYNSLIF------GHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 655 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~pd~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 721 (808)
+.|..+|-..+...-+.|+. ++.+++|+++... ++|+.. .|...+. .+...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44667777777777777888 8888899998885 777642 1111111 12344789999999999876
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 046719 722 KGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP 761 (808)
Q Consensus 722 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 761 (808)
.+-.- ...|...+.--.++|+...|.+++.+++..+++|
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 42222 6777777777788999999999999999988874
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.14 E-value=0.23 Score=57.10 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=25.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 046719 564 LCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLELYENM 615 (808)
Q Consensus 564 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 615 (808)
....|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34456666665553322 24455666666666666666666666654
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.05 E-value=0.3 Score=56.06 Aligned_cols=129 Identities=12% Similarity=0.125 Sum_probs=69.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 046719 313 SMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAEEIVGKEIENGLVPDEVMFNTIVSGYCRT 392 (808)
Q Consensus 313 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 392 (808)
..++..+.+.|..+.|.++.+... .-.......|++++|.++...+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 445555566666666665443211 1123345567777777764332 2566777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 046719 393 GDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQIL 472 (808)
Q Consensus 393 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 472 (808)
|+++.|.+.|.++.+ |..+...+...|+.+...++.+.....|. ++.....|.+.|++++|.+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776643 23344444455666555554444443321 222233344555555555554
Q ss_pred HH
Q 046719 473 EE 474 (808)
Q Consensus 473 ~~ 474 (808)
.+
T Consensus 760 ~~ 761 (814)
T 3mkq_A 760 IK 761 (814)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.81 E-value=3.9e-05 Score=77.01 Aligned_cols=224 Identities=16% Similarity=0.157 Sum_probs=102.3
Q ss_pred CccHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHH
Q 046719 98 KPTFTNILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQ 177 (808)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 177 (808)
.|.+++.|.++....++..+|.+-| ++. .|+..|..++....+.|.+++-...+.-+.+. .+ ++..=+.++-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~k-e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-AR-ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCC----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CC-STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhC----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hc-ccccHHHHHH
Confidence 4455555555555555555555433 111 12333555555555555555555544433322 11 2233344555
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 046719 178 AAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEK 257 (808)
Q Consensus 178 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 257 (808)
+|++.|++.+-.++. ..||+.-...+.+-|...|.++.|.-+|..+. -|.-|...+++.|++..
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHH
Confidence 555555544321111 12344444455555555555555554443322 12333444455555555
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 046719 258 VSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSG 337 (808)
Q Consensus 258 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 337 (808)
|.+.-++ ..+..||..+-.+|...+.+.-|.-.--.++-. +| -...|+..|-..|-+++.+.+++.-..
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 5432222 134456666666666666655554433333221 11 122344455556666666666655542
Q ss_pred CCCCcChhcHHHHHHHHHhc
Q 046719 338 RGFRINSYTCSILLNALCKE 357 (808)
Q Consensus 338 ~~~~~~~~~~~~l~~~~~~~ 357 (808)
. -+.....++-|.-.|++-
T Consensus 258 l-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 258 L-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp S-TTCCHHHHHHHHHHHHSS
T ss_pred C-CchhHHHHHHHHHHHHhc
Confidence 2 122333444454455443
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.74 E-value=0.052 Score=44.17 Aligned_cols=90 Identities=18% Similarity=0.117 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChhHH
Q 046719 673 DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSE---VKELVNDMKVKGLIP--KADTYNILVKGYCNLKDFGGA 747 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A 747 (808)
.+..+.+.|.+..+.|. |+..+-..++|++.+...... ++.+++.+.+.+ .| .......|+-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34455555555555442 566666677778877776555 777777776642 23 234455677777888888888
Q ss_pred HHHHHHHHHCCCCCCHHH
Q 046719 748 YIWYREMFENGFIPSFCI 765 (808)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~ 765 (808)
.++++.+++..|. +..+
T Consensus 94 ~~~~~~lL~~eP~-n~QA 110 (126)
T 1nzn_A 94 LKYVRGLLQTEPQ-NNQA 110 (126)
T ss_dssp HHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHHHhCCC-CHHH
Confidence 8888888877655 4443
No 233
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.67 E-value=3.8 Score=46.16 Aligned_cols=314 Identities=10% Similarity=-0.000 Sum_probs=160.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CcchhHHHHHHH
Q 046719 457 DGYGRMGHFDKCFQILEEMENSGMKPN--VVSYGSLINWLCKDCKLLEAEIVLKDMENRGV-------LPNAQIYNMLID 527 (808)
Q Consensus 457 ~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-------~~~~~~~~~li~ 527 (808)
-+....|+.++++.++......+-..+ ...-..+.-++...|...++..++.......- .+....-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 356677888888887776554210112 22333444455666666677777766554311 011222233333
Q ss_pred HHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 046719 528 GSCTMGR-IKDAFKFFDEMVKREMGPTLVTFN--ALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGS 604 (808)
Q Consensus 528 ~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 604 (808)
++.-.|. -+++...+..++...- +...... +|...+.-.|+.+....++..+.+.. .-++.-...+.-++...|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 3333332 2456666666665421 1111122 23333456677777778887776632 1122223333344557888
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHHcC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 046719 605 SQKCLELYENMKKLGIKPSLRTYHPLLSGCIREG---IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLH 681 (808)
Q Consensus 605 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 681 (808)
.+.+..+.+.+... ..|-...-..+..+|...| .....+++..+.+.. ..+..-...+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88888888888763 2233333333444444444 444455777777632 233333333334455567766677777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHccCCh-------hHHHHHH
Q 046719 682 SEMVDQGIRPDKMTYNSLIFGHLREGKL-SEVKELVNDMKVKGLIPKADTYNIL--VKGYCNLKDF-------GGAYIWY 751 (808)
Q Consensus 682 ~~~~~~g~~pd~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~l--~~~~~~~g~~-------~~A~~~~ 751 (808)
+.+.+.+ .|....-..++-+....|.. .+++..+..+.. .+|..+-... .-+..-.|.. ..-++.+
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L 693 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNF 693 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHH
Confidence 7666643 44443333344444444443 678888888864 4554443222 2223333322 2233333
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHhcCC
Q 046719 752 REMFEN-GFIPSFCIYNELTNGLKQEGK 778 (808)
Q Consensus 752 ~~~~~~-~~~~~~~~~~~l~~~l~~~g~ 778 (808)
.+.... ..+++......++.++...|+
T Consensus 694 ~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 694 LSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 333331 223345666677777776664
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.97 E-value=0.52 Score=41.01 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=75.0
Q ss_pred HHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 046719 635 IREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVK 713 (808)
Q Consensus 635 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~ 713 (808)
...| ++.|.++.+++ .+...|..|.+.....|+++-|.+.|.+..+ +..+.-.|.-.|+.++-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 4456 77777766553 3566777777777777777777777776643 335555566667766666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 046719 714 ELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEI 789 (808)
Q Consensus 714 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 789 (808)
.+.+.....|- ++....++...|++++++++|.+. |--|.. +..-...|-.+.|..+.+++
T Consensus 81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 55555554431 233444555678888888887664 222111 11222346667777777665
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.69 E-value=0.37 Score=40.21 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHcCCCcCHh-hHHHHHHH------HHhcCChHHHHHHHHHhhh
Q 046719 131 RLSLDSINVLLECLVRCNQY------DRALDLFDEIVCMGFRPDKF-TYGKAVQA------AVKIGDLKRACEIFDGMEK 197 (808)
Q Consensus 131 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~~ 197 (808)
+-|.++|-..+..+-+.|++ +..+.+|+++... .+|+.. .|..-+.. +...+++++|+++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34566666666666666776 6666777766653 222211 11111111 1122455555555555543
Q ss_pred CCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCC
Q 046719 198 SRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLV 236 (808)
Q Consensus 198 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 236 (808)
. .+-=..+|.....--.+.|++..|.+++......++.
T Consensus 89 ~-hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 N-CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp H-CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred H-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3 1111334444444444455555555555555544433
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.66 E-value=1.8 Score=37.69 Aligned_cols=45 Identities=24% Similarity=0.358 Sum_probs=23.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHh
Q 046719 145 VRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGM 195 (808)
Q Consensus 145 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 195 (808)
...|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554443 14455555555555555555555555554
No 237
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.32 E-value=5.8 Score=42.93 Aligned_cols=156 Identities=8% Similarity=0.007 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 046719 417 FNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGYGRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCK 496 (808)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 496 (808)
|..... ..+.|+++.+..+...+....+. ....|..+.... .....++....+.+-. +.+.....-+..+..+.+
T Consensus 10 ~~~a~~-a~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~--~~p~~~~Lr~~~l~~l~~ 84 (618)
T 1qsa_A 10 YAQIKQ-AWDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANP--TLPPARTLQSRFVNELAR 84 (618)
T ss_dssp HHHHHH-HHHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCC--CChhHHHHHHHHHHHHHh
Confidence 444433 34567887777776655332121 112333332221 1224454444444322 122223334455666777
Q ss_pred cCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH--HHH
Q 046719 497 DCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVM--EAE 574 (808)
Q Consensus 497 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~ 574 (808)
.+++......+.. .+.+...-.....+....|+..+|......+-..|.. .......++..+.+.|.+. ...
T Consensus 85 ~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~~~~~ 158 (618)
T 1qsa_A 85 REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLAYL 158 (618)
T ss_dssp TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCHHHHH
Confidence 7777766654332 2335555566777778888888787777776655422 3445667777777666543 334
Q ss_pred HHHHHHHhC
Q 046719 575 DMLPQITSS 583 (808)
Q Consensus 575 ~~~~~~~~~ 583 (808)
.-++.+...
T Consensus 159 ~R~~~al~~ 167 (618)
T 1qsa_A 159 ERIRLAMKA 167 (618)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 444444443
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.11 E-value=9.7 Score=42.99 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=14.8
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHH
Q 046719 207 YNVLISGFCKEKKIRDAEKLFDEMC 231 (808)
Q Consensus 207 ~~~l~~~~~~~g~~~~A~~~~~~m~ 231 (808)
|...+.++.+.++.+.+.++|..+.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555556666666666666655
No 239
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.09 E-value=0.16 Score=43.33 Aligned_cols=129 Identities=11% Similarity=-0.020 Sum_probs=68.7
Q ss_pred CCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHHHHCC-CCCCH-------HHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 652 INLVPDLLVYN--ALIHCYAEHGDVQKALVLHSEMVDQG-IRPDK-------MTYNSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 652 ~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~g-~~pd~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
.|+.|...+|+ .-+..+...|.++.|+-+.+.+.... ..|+. .++..++.++...|++..|...|+++++
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 35555544333 33556677888888887777755421 23332 1455677888888888888888888643
Q ss_pred C--CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 722 K--GLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 722 ~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
. .+..+..+...+.. ...... ......+.+.-+.++.||.+.|++++|+.+++.++.+.
T Consensus 92 ~~k~l~k~~s~~~~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred HHHHHhcCCCccccccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 1 12111111111100 000000 01123366788899999999999999999988875543
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.90 E-value=1.5 Score=36.38 Aligned_cols=74 Identities=11% Similarity=0.109 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH
Q 046719 690 RPDKMTYNSLIFGHLREGK---LSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFC 764 (808)
Q Consensus 690 ~pd~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 764 (808)
.|+..+-..++|++.+... ..+++.+++.+.+.+..-.......|+-++.+.|++++|.++.+.+++..|. +..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~-n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC-CHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHH
Confidence 4566666677888877765 3467777777776332123445567777888888888888888888887655 443
No 241
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.63 E-value=2.5 Score=34.48 Aligned_cols=63 Identities=14% Similarity=0.055 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 697 NSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 697 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
+..+..+..+|+-++-.+++..+... ..|++.....++.+|.+.|+..+|.+++.++-+.|.+
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33444444455555444444443221 3444445555555555555555555555555544443
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.62 E-value=0.75 Score=37.54 Aligned_cols=74 Identities=11% Similarity=0.130 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHhcCCH---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH
Q 046719 690 RPDKMTYNSLIFGHLREGKL---SEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFC 764 (808)
Q Consensus 690 ~pd~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 764 (808)
.|+..+--.++|++.+.... .+++.+++.+.+.+..-....+..|+-++.+.|++++|.++.+.+++..|. +..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~-N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT-CHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC-CHH
Confidence 34555666777777776653 467777777766431112455667777788888888888888888876555 443
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.05 E-value=0.75 Score=50.73 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=26.8
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHH
Q 046719 703 HLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREM 754 (808)
Q Consensus 703 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 754 (808)
|...|+++-|+++.+++.. ..| +..+|..|+.+|.+.||++.|+-.+..+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4445555555555555555 333 3455555555555555555555555443
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.68 E-value=0.51 Score=52.03 Aligned_cols=124 Identities=19% Similarity=0.206 Sum_probs=80.7
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHCCCCcCHHhHH--HHHHHHHHcC--HHHHHHHHHHHHHC------CCCC-CH--
Q 046719 593 NSLISGYSSLGS-SQKCLELYENMKKLGIKPSLRTYH--PLLSGCIREG--IVAVEKLFNEMLQI------NLVP-DL-- 658 (808)
Q Consensus 593 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~--~~~a~~~~~~~~~~------~~~~-~~-- 658 (808)
..++..+...++ ++.|+.+|+++.+. .|...++. .++..+...+ --+|.++..+.++. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 445555555666 58899999999875 34333322 2333333333 44566666665431 1111 11
Q ss_pred --------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 046719 659 --------LVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDK-MTYNSLIFGHLREGKLSEVKELVNDMK 720 (808)
Q Consensus 659 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 720 (808)
...+.=++.|...|+++-|+++.++... ..|+. .+|..|+.+|...|+++.|+-.++.+-
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1222224456678999999999999998 56665 499999999999999999999888863
No 245
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.45 E-value=5 Score=32.75 Aligned_cols=137 Identities=19% Similarity=0.119 Sum_probs=65.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 046719 531 TMGRIKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSSLGSSQKCLE 610 (808)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 610 (808)
-.|.+++..++..+..... +..-||.++--....-+-+-..+.++.+-+. -|. ...|+......
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 3566666666666665541 4444454444344444444444444444321 111 22344444333
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHHcC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 046719 611 LYENMKKLGIKPSLRTYHPLLSGCIREG-IVAVEKLFNEMLQINLVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGI 689 (808)
Q Consensus 611 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 689 (808)
.+-.+ ..+...+...+..+...| -++-.+++..++.. .+|++.....+..+|.+-|+..+|.+++.++-++|+
T Consensus 83 C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33322 123333444445555555 55555555554332 245555555556666666666666666666655554
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.19 E-value=0.64 Score=39.71 Aligned_cols=140 Identities=14% Similarity=0.031 Sum_probs=76.0
Q ss_pred CCCcCHHh--HHHHHHHHHHcC-HHHHHHHHHHHHHCC-CCCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 046719 619 GIKPSLRT--YHPLLSGCIREG-IVAVEKLFNEMLQIN-LVPD-------LLVYNALIHCYAEHGDVQKALVLHSEMVDQ 687 (808)
Q Consensus 619 ~~~p~~~~--~~~l~~~~~~~~-~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 687 (808)
|+.|.... +..=+..+...+ ++.|.-+.+.++... ..|+ ..++..+++++...|++..|...|++.++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 55565433 333455577778 999988888765421 2333 135667789999999999999999998653
Q ss_pred C-CCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHH
Q 046719 688 G-IRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCI 765 (808)
Q Consensus 688 g-~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 765 (808)
. .-+... +...+. ....... .....++...-..+..||.+.|++++|+.+++..-.. .-++.+
T Consensus 93 ~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k--~Rt~kv 157 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR--QRTPKI 157 (167)
T ss_dssp HHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG--GCCHHH
T ss_pred HHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch--hcCHHH
Confidence 1 111111 111110 0000000 0112334556667899999999999999998875322 124555
Q ss_pred HHHHHHHH
Q 046719 766 YNELTNGL 773 (808)
Q Consensus 766 ~~~l~~~l 773 (808)
-..|+..|
T Consensus 158 nm~LakLy 165 (167)
T 3ffl_A 158 NMLLANLY 165 (167)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 55555443
No 247
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.05 E-value=6e-05 Score=75.71 Aligned_cols=222 Identities=13% Similarity=0.158 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 046719 205 FVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGF 284 (808)
Q Consensus 205 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 284 (808)
.+|..|..+..+.|++.+|++.|-+. -|+..|..+|....+.|.+++-...+...++..- +...=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHH
Confidence 34556666666666666665544222 1444555666666666666666666655544322 223334566666
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChHHHH
Q 046719 285 CKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKCGDGEGVMALYEELSGRGFRINSYTCSILLNALCKEGKVEIAE 364 (808)
Q Consensus 285 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 364 (808)
++.+++.+-++.+. .|+..-...+.+-|...|.++.|.-+|..+.. |.-|...+.+.|++..|.
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSST
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHH
Confidence 66666554433321 24555555566666666666666655543322 222333344444444444
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 046719 365 EIVGKEIENGLVPDEVMFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKG 444 (808)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 444 (808)
+.-++ ..+..+|..+-.+|...+++.-|.-.--.+.-. ..-...++..|-..|.+++-+.+++.-...
T Consensus 191 daArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl- 258 (624)
T 3lvg_A 191 DGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL- 258 (624)
T ss_dssp TTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-
T ss_pred HHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-
Confidence 32211 124455555555555555554443322222211 111122344455555555555555544421
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 046719 445 VSPNVKTNNTLIDGYGRM 462 (808)
Q Consensus 445 ~~~~~~~~~~l~~~~~~~ 462 (808)
-......|+-|.-.|++-
T Consensus 259 ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 259 ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TTCCHHHHHHHHHHHHSS
T ss_pred CchhHHHHHHHHHHHHhc
Confidence 112344555555555543
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.36 E-value=5.2 Score=47.48 Aligned_cols=52 Identities=13% Similarity=0.044 Sum_probs=28.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046719 104 ILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEI 160 (808)
Q Consensus 104 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 160 (808)
.++..+...+.++.+.++.... +.+....-.++++|...|++++|...|.++
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444555555555555544332 223444455666666677777777666554
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.10 E-value=14 Score=35.67 Aligned_cols=190 Identities=13% Similarity=0.127 Sum_probs=106.1
Q ss_pred hhhhHHHHHHHHhCCCchHHHHHHHHHHhcCCCCCCChhhHHhhhhccCCCCCccHHHHHHHHHHcCCChhHHHHHHHHH
Q 046719 46 RNEQVRKIRILFQNNRTEAAQSLIKSIVLSNASPFTSPHELFSLFSVSSPYYKPTFTNILLSILSSAKLPSEALQLYAST 125 (808)
Q Consensus 46 ~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 125 (808)
.+..+.+++.....|++=+|.+.++++. .-|.+++++++|.+++..-
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~---------------------------------~Ry~~~~~~~eAidlL~~g 59 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIA---------------------------------NRYVRSKSYEHAIELISQG 59 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH---------------------------------HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHH---------------------------------HHHHHhcCHHHHHHHHHHH
Confidence 4567888899999999999999887543 3355667777777775432
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCcCHhhHHHHHHHHHhcCChH-HHHHHHHHhh----
Q 046719 126 KADGTRLSLDSINVLLECLVRCNQYDRALDL----FDEIVCMGFRPDKFTYGKAVQAAVKIGDLK-RACEIFDGME---- 196 (808)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~---- 196 (808)
...+.+.|+...|-.+ .+-..+.+..++......++..+.....-+ .=.++.++++
T Consensus 60 ---------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~ 124 (312)
T 2wpv_A 60 ---------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSI 124 (312)
T ss_dssp ---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHh
Confidence 1223344444444332 333444556666666666666554422111 1122222222
Q ss_pred hCC--CCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHhCCCC
Q 046719 197 KSR--TRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKV---GEFEKVSALRERMKRDKVE 271 (808)
Q Consensus 197 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~ 271 (808)
+.| ..-+......+...|.+.|++.+|+.-|-.- ..-|...+..++.-+.+. |...++--..-+
T Consensus 125 ~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R------- 193 (312)
T 2wpv_A 125 KFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR------- 193 (312)
T ss_dssp HTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH-------
T ss_pred hcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH-------
Confidence 222 1236667788888888888888888876421 111355555555555444 444333222111
Q ss_pred cCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 046719 272 VSLVMFNSLLGGFCKAKRMEEAKSVCKEMEA 302 (808)
Q Consensus 272 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 302 (808)
.+-.|.-.|+...|..+|+...+
T Consensus 194 --------aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 194 --------LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp --------HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred --------HHHHHHHhcCHHHHHHHHHHHHH
Confidence 12234456777777777776543
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.94 E-value=2.8 Score=42.58 Aligned_cols=57 Identities=7% Similarity=0.064 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 046719 139 VLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGME 196 (808)
Q Consensus 139 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 196 (808)
.++..+...|++++|...+..+....+- +...|..++.++.+.|+..+|++.|+++.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555444333 44555555555555555555555555543
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.12 E-value=26 Score=36.14 Aligned_cols=96 Identities=13% Similarity=0.045 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCH--H
Q 046719 522 YNMLIDGSCTMGRIKDAFKFFDEMVKR--EMGPT---LVTFNALINGLCKKGRVMEAEDMLPQITS----SGLNPDV--I 590 (808)
Q Consensus 522 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~--~ 590 (808)
...|...+...|++.+|..++..+... +.... ...+..-+..|...+++..|..++.++.. ....|+. .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345666677777777777777776543 21111 33455566677777777777777776532 2112221 3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 046719 591 TYNSLISGYSSLGSSQKCLELYENMKK 617 (808)
Q Consensus 591 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 617 (808)
.|..++..+...+++.+|.+.|.++..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 455666666777777777777776654
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.02 E-value=21 Score=34.82 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 656 PDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILV 735 (808)
Q Consensus 656 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 735 (808)
-|+.....+...|.+.|++.+|...|- . |-.+....+..++.-+...+...++--++-+ .+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~dlfiaR---------------aV 194 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTAPLYCAR---------------AV 194 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGHHHHHHH---------------HH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccHHHHHHH---------------HH
Confidence 467788889999999999999998873 1 3333334554444333333322222222111 22
Q ss_pred HHHHccCChhHHHHHHHHHH
Q 046719 736 KGYCNLKDFGGAYIWYREMF 755 (808)
Q Consensus 736 ~~~~~~g~~~~A~~~~~~~~ 755 (808)
--|.-.++...|..+++...
T Consensus 195 L~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 23455778888877665554
No 253
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.83 E-value=38 Score=36.59 Aligned_cols=143 Identities=9% Similarity=0.063 Sum_probs=79.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 046719 381 MFNTIVSGYCRTGDLNRAMLAIQQMENHGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPN-VKTNNTLIDGY 459 (808)
Q Consensus 381 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 459 (808)
.|.....+ .+.|++..+..+...+...-+. .-..|..|...+ .....++...++. +..-.|- ...-+..+..+
T Consensus 9 ~~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~---~~~~~p~~~~Lr~~~l~~l 82 (618)
T 1qsa_A 9 RYAQIKQA-WDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVR---ANPTLPPARTLQSRFVNEL 82 (618)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHH---HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHH---HCCCChhHHHHHHHHHHHH
Confidence 34444443 4678888887776665432121 112333333222 1224454444443 3321222 22334455667
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHhcCCH
Q 046719 460 GRMGHFDKCFQILEEMENSGMKPNVVSYGSLINWLCKDCKLLEAEIVLKDMENRGVLPNAQIYNMLIDGSCTMGRI 535 (808)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 535 (808)
.+.+++...+..+.. .+.+...-.....+....|+..+|......+-..|.. .+..+..++..+.+.|.+
T Consensus 83 ~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 83 ARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCS
T ss_pred HhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCC
Confidence 778888776664432 2446666667778888899988888877777655433 455667777777665554
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.67 E-value=1.5 Score=40.89 Aligned_cols=59 Identities=19% Similarity=0.072 Sum_probs=46.6
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 701 FGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 701 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
..+.+.|.+++|+..+..-++.. +-|...-..++..+|-.|+|+.|.+-++-+.+..+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 45677889999998888887742 336777788888999999999999998888877543
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.91 E-value=27 Score=34.01 Aligned_cols=191 Identities=14% Similarity=0.071 Sum_probs=102.2
Q ss_pred cchhhhHHHHHHHHhCCCc---hHHHHHHHHHHhcCCCCCCChhhHHhhhhccCCCCCccHHHHHHHHHHcCCChhHHHH
Q 046719 44 QERNEQVRKIRILFQNNRT---EAAQSLIKSIVLSNASPFTSPHELFSLFSVSSPYYKPTFTNILLSILSSAKLPSEALQ 120 (808)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~---~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 120 (808)
+..+..+.+++.....|++ -+|.+.++++. .-|.+++++++|.+
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~---------------------------------~Ry~~~k~y~eAid 56 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVA---------------------------------ARYSKQGNWAAAVD 56 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------------------------------HHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHH---------------------------------HHHHhhcCHHHHHH
Confidence 3456788889999999999 88888877532 23566777888877
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCcCHhhHHHHHHHHHhcCChHH-HHHHHHHh
Q 046719 121 LYASTKADGTRLSLDSINVLLECLVRCNQYDRALDL----FDEIVCMGFRPDKFTYGKAVQAAVKIGDLKR-ACEIFDGM 195 (808)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~ 195 (808)
++..- ...+.+.|+...|-.+ .+-..+.+.++|......++..+.....-+- =..+.+++
T Consensus 57 LL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~a 121 (336)
T 3lpz_A 57 ILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEM 121 (336)
T ss_dssp HHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Confidence 65332 1223344444443332 2334445566666666666665544332111 11122222
Q ss_pred h----hCC--CCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 046719 196 E----KSR--TRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDK 269 (808)
Q Consensus 196 ~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 269 (808)
+ +.| ..-|......+...|.+.+++.+|+.-|- . |..+.+..+..++.-+.+.+...++--.+
T Consensus 122 i~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~dlfi------- 190 (336)
T 3lpz_A 122 IDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTAPLYC------- 190 (336)
T ss_dssp HHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGHHHHH-------
T ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccHHHHH-------
Confidence 2 112 22355666777788888888888877762 2 22333356655554444443322221111
Q ss_pred CCcCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 046719 270 VEVSLVMFNSLLGGFCKAKRMEEAKSVCKEME 301 (808)
Q Consensus 270 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 301 (808)
-. .+--|.-.+++..|..+|+...
T Consensus 191 -------aR-aVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 191 -------AR-AVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -------HH-HHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------HH-HHHHHHHhCCHHHHHHHHHHHH
Confidence 11 1222445567777766665554
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.83 E-value=13 Score=44.06 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=28.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHh
Q 046719 140 LLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGM 195 (808)
Q Consensus 140 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 195 (808)
++..+...+.++.|..+..... .+....-.+.+++...|++++|...|.+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4455556666666555443321 13444344555666777777777777665
No 257
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.55 E-value=36 Score=35.11 Aligned_cols=93 Identities=19% Similarity=0.193 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCcc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHH
Q 046719 489 SLINWLCKDCKLLEAEIVLKDMENR--GVLPN---AQIYNMLIDGSCTMGRIKDAFKFFDEMVKR----EMGPT--LVTF 557 (808)
Q Consensus 489 ~ll~~~~~~~~~~~A~~~~~~m~~~--~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~ 557 (808)
.|...+...|++.+|..++..+... +.... ...+...++.|...+++..|..++.++... ..+|+ ...+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 3444455555555555555554321 11111 223444555666666666666666655321 11111 2234
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 046719 558 NALINGLCKKGRVMEAEDMLPQIT 581 (808)
Q Consensus 558 ~~l~~~~~~~g~~~~A~~~~~~~~ 581 (808)
...+..+...+++.+|...|.++.
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445555566666666666666554
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.16 E-value=2.9 Score=42.49 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHH-----CCCCCCHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP-KADTYNILVKGYCNLKDFGGAYIWYREMFE-----NGFIPSFCIYNE 768 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 768 (808)
....++..+...|++++|+..+..+.. ..| +...|..++.++.+.|+..+|++.|+++.+ .|..|.+..-..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 455677888899999999999998877 455 677888999999999999999999988753 588888775443
Q ss_pred H
Q 046719 769 L 769 (808)
Q Consensus 769 l 769 (808)
.
T Consensus 251 ~ 251 (388)
T 2ff4_A 251 N 251 (388)
T ss_dssp H
T ss_pred H
Confidence 3
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.28 E-value=4 Score=38.10 Aligned_cols=57 Identities=23% Similarity=0.221 Sum_probs=34.9
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 046719 668 YAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK 727 (808)
Q Consensus 668 ~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 727 (808)
..+.|++++|++....-++. -+-|...-..|+..+|-.|++++|.+-++.+.+ +.|+
T Consensus 7 ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGG
T ss_pred HHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCch
Confidence 45566677777666666664 233444555666667777777777766666665 4454
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.79 E-value=7.8 Score=29.67 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046719 711 EVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELT 770 (808)
Q Consensus 711 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 770 (808)
+..+-++.+...++.|++.+....+.+|.+.+|+.-|.++++-.....-. ...+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~-~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-chhhHHHHH
Confidence 45556666666667777777777777777778888887777766543222 234444443
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.94 E-value=7.6 Score=29.73 Aligned_cols=63 Identities=11% Similarity=0.198 Sum_probs=44.0
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 046719 219 KIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLG 282 (808)
Q Consensus 219 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 282 (808)
+.-+.++-+..+......|++....+.+.+|.|.+++.-|.++|+.++.. +.....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34456677777777778888888888888888888888888888877654 2222344555544
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.14 E-value=10 Score=39.04 Aligned_cols=119 Identities=13% Similarity=0.027 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHH
Q 046719 639 IVAVEKLFNEMLQINL-VP-DLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPD--KMTYNSLIFGHLREGKLSEVKE 714 (808)
Q Consensus 639 ~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd--~~~~~~l~~~~~~~g~~~~A~~ 714 (808)
.++-.+......+... .. -...+..++..|.+.|++++|.+.|.++.+.-..+. ...+..++..+...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 4444444444444221 12 123556677788888888888888888876422222 2356677777778888888888
Q ss_pred HHHHHHH---CCCCCCHHH--HHHHHHHHHccCChhHHHHHHHHHHHC
Q 046719 715 LVNDMKV---KGLIPKADT--YNILVKGYCNLKDFGGAYIWYREMFEN 757 (808)
Q Consensus 715 ~~~~~~~---~g~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~ 757 (808)
.++++.. .+-.|+... ...-+..+...++|.+|...|-++...
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 8777642 222222221 112233344567788887777776653
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.14 E-value=11 Score=38.90 Aligned_cols=97 Identities=12% Similarity=-0.042 Sum_probs=70.4
Q ss_pred HhHHHHHHHHHHcC-HHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCHHH--H
Q 046719 625 RTYHPLLSGCIREG-IVAVEKLFNEMLQIN--LVPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQ---GIRPDKMT--Y 696 (808)
Q Consensus 625 ~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~pd~~~--~ 696 (808)
.+...+...+.+.| +++|.+.+.++.... ...-...+-.++..+...+++..+...+.++... +-.|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35677888899999 999999999998743 2333567788889999999999999999988642 22233221 1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHH
Q 046719 697 NSLIFGHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 697 ~~l~~~~~~~g~~~~A~~~~~~~~~ 721 (808)
..-+..+...+++.+|...|-++..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1223345578899999998888654
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.43 E-value=53 Score=31.66 Aligned_cols=27 Identities=19% Similarity=-0.050 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH
Q 046719 656 PDLLVYNALIHCYAEHGDVQKALVLHS 682 (808)
Q Consensus 656 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 682 (808)
-|+..+..+...|.+.|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 367788888888999999998888763
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=72.14 E-value=18 Score=29.41 Aligned_cols=61 Identities=11% Similarity=0.206 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 046719 221 RDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLG 282 (808)
Q Consensus 221 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 282 (808)
-+..+-+..+....+.|++....+.+.+|-|.+|+..|.++|+-++.. +.+....|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 345566666667777788888888888888888888888888877654 2233344555543
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.89 E-value=21 Score=27.22 Aligned_cols=78 Identities=13% Similarity=0.110 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 046719 184 DLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRE 263 (808)
Q Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 263 (808)
+.++|.-+-+.+...+. ...+--+-+..+...|+|++|..+.+.+. .||.+.|-+|.. .|.|-.+++..-+-
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 56666666666665543 22222333445567777777777765543 577777766544 36677777776666
Q ss_pred HHHhCC
Q 046719 264 RMKRDK 269 (808)
Q Consensus 264 ~~~~~~ 269 (808)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665443
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=68.90 E-value=18 Score=27.54 Aligned_cols=78 Identities=12% Similarity=0.054 Sum_probs=44.4
Q ss_pred ChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 046719 184 DLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRE 263 (808)
Q Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 263 (808)
+.++|.-+-+.+...+. ...+--+-+..+...|+|++|..+.+.+. .||.+.|-.|.. .|.|-.+++..-+-
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 55666666666655432 22222333344556777777776655443 567776655544 36666666666665
Q ss_pred HHHhCC
Q 046719 264 RMKRDK 269 (808)
Q Consensus 264 ~~~~~~ 269 (808)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555443
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.96 E-value=34 Score=30.32 Aligned_cols=53 Identities=25% Similarity=0.123 Sum_probs=29.8
Q ss_pred HhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 046719 709 LSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP 761 (808)
Q Consensus 709 ~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 761 (808)
..++.++|..|..+|+--. +..|...+..+...|++.+|.++|+..++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4456666666655555443 3334455555566666666666666666554444
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=67.35 E-value=50 Score=26.94 Aligned_cols=48 Identities=13% Similarity=0.121 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046719 535 IKDAFKFFDEMVKREMGPTLVTFNALINGLCKKGRVMEAEDMLPQITS 582 (808)
Q Consensus 535 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 582 (808)
.-+..+-++.+...++.|++.+....+.+|.+.+++..|.++|+-++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334445555555556666666666666666666666666666666654
No 270
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=64.67 E-value=1.2e+02 Score=30.41 Aligned_cols=58 Identities=9% Similarity=0.019 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046719 524 MLIDGSCTMGRIKDAFKFFDEMVKR--EMGPT---LVTFNALINGLCKKGRVMEAEDMLPQIT 581 (808)
Q Consensus 524 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 581 (808)
.++..|...|++.+|.+++..+.+. ..... ..++..-+..|...+++.++...+....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455556666666665555555542 11101 2233444455556666666666555543
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.81 E-value=49 Score=25.25 Aligned_cols=77 Identities=13% Similarity=0.041 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 046719 673 DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYR 752 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 752 (808)
..+||..+-+-+...+. ...+--.-+..+...|+|++|..+.+.. ..||...|..|.. .+.|-.+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 56666666666655432 1111112233455666777666655443 3566666555432 35666666666665
Q ss_pred HHHHC
Q 046719 753 EMFEN 757 (808)
Q Consensus 753 ~~~~~ 757 (808)
++-..
T Consensus 93 ~la~s 97 (115)
T 2uwj_G 93 GLGGS 97 (115)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 55443
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=62.78 E-value=49 Score=25.28 Aligned_cols=76 Identities=9% Similarity=0.031 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 046719 673 DVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYR 752 (808)
Q Consensus 673 ~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 752 (808)
..+||..+-+-+...+. ...+--.-+..+...|+|++|..+.+.. ..||...|..|.. .+.|-.+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 55666666665555432 1111112233455666666666655443 2556555554432 35566666655555
Q ss_pred HHHH
Q 046719 753 EMFE 756 (808)
Q Consensus 753 ~~~~ 756 (808)
++-.
T Consensus 94 ~la~ 97 (116)
T 2p58_C 94 RLAR 97 (116)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 5443
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.20 E-value=44 Score=29.63 Aligned_cols=56 Identities=14% Similarity=0.056 Sum_probs=37.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 046719 671 HGDVQKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP 726 (808)
Q Consensus 671 ~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 726 (808)
+++..++..+|..|..+|+.-... -|...+..+-..|++.+|.++++.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344667777777777766655433 56666677777777777777777776666566
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=57.07 E-value=71 Score=26.83 Aligned_cols=52 Identities=12% Similarity=0.064 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 046719 710 SEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP 761 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 761 (808)
+++.++|..|..+|+--. +..|...+..+...|++.+|.++|+..++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 336667777766666443 3445566666667777777777777777665554
No 275
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.12 E-value=42 Score=34.91 Aligned_cols=125 Identities=15% Similarity=0.138 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcCH--hhHH-HHHHHHHhcCChHHHHHHHHHhhhCCCCCChh--
Q 046719 132 LSLDSINVLLECLVRCNQYDRALDLFDEIVCMGF-RPDK--FTYG-KAVQAAVKIGDLKRACEIFDGMEKSRTRPNVF-- 205 (808)
Q Consensus 132 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~--~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-- 205 (808)
.....+|.+++.|...+.++.|..+..+..---. .++. ..|. -+.+.+.-++++.+|.+.+....+.-+.....
T Consensus 229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~g 308 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLG 308 (523)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSH
T ss_pred hhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhh
Confidence 3466788888888888888888888887742100 1111 2333 35666777888888888888877643221111
Q ss_pred ----h--HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 046719 206 ----V--YNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRE 263 (808)
Q Consensus 206 ----~--~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 263 (808)
. |..++..+ .|++.+ ..+|. +.+.......|..|..++ +.|+.++-..+++
T Consensus 309 fr~~a~K~lI~V~LL--lG~iP~-r~lf~---q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~ 365 (523)
T 4b4t_S 309 FLQQSNKLHCCIQLL--MGDIPE-LSFFH---QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTIT 365 (523)
T ss_dssp HHHHHHHHHHHHHHH--HTCCCC-HHHHT---TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhHHhh--cCCCCC-hHHhh---chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 1 22222322 366553 22222 111111133466666664 6677766555544
No 276
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=53.17 E-value=56 Score=31.05 Aligned_cols=12 Identities=8% Similarity=0.052 Sum_probs=5.0
Q ss_pred HHHHhcCChhHH
Q 046719 247 DGYCKVGEFEKV 258 (808)
Q Consensus 247 ~~~~~~g~~~~a 258 (808)
...++.|+.+-+
T Consensus 67 ~~A~~~g~~~~v 78 (285)
T 3kea_A 67 HQAATLEDTKIV 78 (285)
T ss_dssp HHHTTSSSCHHH
T ss_pred HHHHHcCCHHHH
Confidence 333444444433
No 277
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=52.95 E-value=60 Score=29.52 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=7.9
Q ss_pred HhcCChhHHHHHHHHHHh
Q 046719 250 CKVGEFEKVSALRERMKR 267 (808)
Q Consensus 250 ~~~g~~~~a~~~~~~~~~ 267 (808)
++.|+.+.+..+++.+.+
T Consensus 17 ~~~g~~~~v~~Ll~~~~~ 34 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQ 34 (241)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 344444444444443333
No 278
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=52.29 E-value=49 Score=30.18 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=9.4
Q ss_pred HHhcCChHHHHHHHHHhhhC
Q 046719 179 AVKIGDLKRACEIFDGMEKS 198 (808)
Q Consensus 179 ~~~~g~~~~A~~~~~~~~~~ 198 (808)
.++.|+.+....+++.+.+.
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~ 35 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQG 35 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhc
Confidence 34455555555555444333
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=52.14 E-value=69 Score=29.98 Aligned_cols=8 Identities=13% Similarity=0.069 Sum_probs=3.4
Q ss_pred HhcCCHHH
Q 046719 425 CELGEMDK 432 (808)
Q Consensus 425 ~~~g~~~~ 432 (808)
+..|..+-
T Consensus 227 ~~~~~~~~ 234 (285)
T 1wdy_A 227 VEKKHLGL 234 (285)
T ss_dssp HHTTCHHH
T ss_pred HHcCCHHH
Confidence 34444443
No 280
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.52 E-value=92 Score=26.56 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 046719 710 SEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSF 763 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 763 (808)
+++.++|..|..+|+--. +..|...+..+...|++.+|.++|+..++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 346677777777776554 445667777777788888888888888877666543
No 281
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=50.23 E-value=2.1e+02 Score=29.30 Aligned_cols=86 Identities=9% Similarity=-0.115 Sum_probs=54.5
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 046719 705 REGKLSEVKELVNDMKVKGLIPKADTYNILVKGYCNLKD-----FGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKL 779 (808)
Q Consensus 705 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 779 (808)
+.++.+.|+.++.+|++.|..|....-..+..+...-|. ..-|...++.....|.+.....+...+-.+..+-+.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~pe~~~~l~~~~~~la~~pks 346 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKS 346 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCcc
Confidence 457888999999999998877766655566666665554 334555666666667542233344444446666677
Q ss_pred hHHHHHHHHHH
Q 046719 780 KEAQILCSEIS 790 (808)
Q Consensus 780 ~~A~~~~~~~~ 790 (808)
+.+...++++.
T Consensus 347 n~~~~a~~~a~ 357 (447)
T 3pvs_A 347 NAVYTAFKAAL 357 (447)
T ss_dssp CHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 76666665554
No 282
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=50.16 E-value=1.4e+02 Score=26.47 Aligned_cols=11 Identities=18% Similarity=0.504 Sum_probs=4.3
Q ss_pred HHHHHHHhcCC
Q 046719 244 TLVDGYCKVGE 254 (808)
Q Consensus 244 ~li~~~~~~g~ 254 (808)
..+.++.+.|+
T Consensus 69 ~a~~aL~~~~~ 79 (211)
T 3ltm_A 69 AAADALGQIGD 79 (211)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHhhCC
Confidence 33333444333
No 283
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=50.10 E-value=1e+02 Score=30.39 Aligned_cols=24 Identities=0% Similarity=0.260 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 046719 137 INVLLECLVRCNQYDRALDLFDEI 160 (808)
Q Consensus 137 ~~~l~~~~~~~~~~~~A~~~~~~~ 160 (808)
...++.-|...++.++|...++++
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL 80 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDL 80 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHh
Confidence 345566666666666666666554
No 284
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=49.60 E-value=1.7e+02 Score=27.38 Aligned_cols=125 Identities=12% Similarity=0.087 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHCCCCCCHHHHHH
Q 046719 655 VPDLLVYNALIHCYAEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREG-KLSEVKELVNDMKVKGLIPKADTYNI 733 (808)
Q Consensus 655 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~ 733 (808)
.++...-...+.++...|+ .++...+..+.+ .+|...-...++++...| ....+...+..+.+ .++..+-..
T Consensus 139 d~~~~vR~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~ 211 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVIND-KATIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIE 211 (280)
T ss_dssp CSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHH
Confidence 3555555555566666655 234555555544 345444445555555544 23455555555543 356666666
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 734 LVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 734 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
.+.++.+.|+ +++...+.++++. ++ +....+.++.+.|. .++...+.+++...
T Consensus 212 A~~aL~~~~~-~~~~~~L~~~l~d---~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~~ 264 (280)
T 1oyz_A 212 AIIGLSYRKD-KRVLSVLCDELKK---NT--VYDDIIEAAGELGD-KTLLPVLDTMLYKF 264 (280)
T ss_dssp HHHHHHHTTC-GGGHHHHHHHHTS---SS--CCHHHHHHHHHHCC-GGGHHHHHHHHTTS
T ss_pred HHHHHHHhCC-HhhHHHHHHHhcC---cc--HHHHHHHHHHhcCc-hhhhHHHHHHHhcC
Confidence 6667777775 3455555555542 23 33445666777776 46677777766544
No 285
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=48.07 E-value=1e+02 Score=25.89 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 046719 675 QKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP 726 (808)
Q Consensus 675 ~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 726 (808)
+++..+|..|..+|+--... -|...+..+-..|++.+|.++++.-++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34778888888877765544 67777888888888888888888888776666
No 286
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=47.23 E-value=2.3e+02 Score=28.33 Aligned_cols=93 Identities=9% Similarity=-0.118 Sum_probs=49.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCc-----chhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHH--
Q 046719 489 SLINWLCKDCKLLEAEIVLKDMENRGVLP-----NAQIYNMLIDGSCTMGRIKDAFKFFDEMVKR--EMGPTLVTFNA-- 559 (808)
Q Consensus 489 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~-- 559 (808)
.++..|...|++.+|..++..+.+.-... -..++..-+..|...+++.++...+...... .+.+++.+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 35556666666666666666655421010 1224555566677777777777777666542 12223322211
Q ss_pred H--HHHHH-hcCChHHHHHHHHHHH
Q 046719 560 L--INGLC-KKGRVMEAEDMLPQIT 581 (808)
Q Consensus 560 l--~~~~~-~~g~~~~A~~~~~~~~ 581 (808)
. ...+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1 12344 5677777777666553
No 287
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=46.68 E-value=1.5e+02 Score=26.07 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=25.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcC
Q 046719 146 RCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIG 183 (808)
Q Consensus 146 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 183 (808)
|..+++.|+-++-+|++.| .|.......++.+.-.-|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4467888888888888888 655555555555554444
No 288
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=46.66 E-value=2.1e+02 Score=27.57 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=49.0
Q ss_pred CHhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 046719 708 KLSEVKELVNDMKVKGLIPKAD--TYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGKLKEAQIL 785 (808)
Q Consensus 708 ~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~ 785 (808)
+.....++..-+..-.+.|... +...-+....+.+++..|..+.+++++.++.++ ..++|.++
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~---------------~a~qArki 249 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP---------------RAEQARKI 249 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH---------------HHHHHHHH
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH---------------HHHHHHHH
Confidence 3344555555555544555432 344556677899999999999999998876532 23457777
Q ss_pred HHHHHHcCCCCCc
Q 046719 786 CSEISIVGKDAWT 798 (808)
Q Consensus 786 ~~~~~~~~~~~~~ 798 (808)
....-+.+.+..+
T Consensus 250 l~~ce~~~~Da~e 262 (325)
T 3mv2_A 250 KNKADSMASDAIP 262 (325)
T ss_dssp HHHHHTSCCCSSC
T ss_pred HHHHhcCCCCccc
Confidence 7776666655544
No 289
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=45.73 E-value=66 Score=30.12 Aligned_cols=6 Identities=50% Similarity=0.518 Sum_probs=2.6
Q ss_pred HhcCCh
Q 046719 355 CKEGKV 360 (808)
Q Consensus 355 ~~~g~~ 360 (808)
+..|+.
T Consensus 113 ~~~~~~ 118 (285)
T 1wdy_A 113 AVYGKV 118 (285)
T ss_dssp HHTTCH
T ss_pred HHhCCH
Confidence 344443
No 290
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=44.85 E-value=15 Score=34.53 Aligned_cols=19 Identities=11% Similarity=0.253 Sum_probs=9.9
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 046719 423 KFCELGEMDKAEEWVKRML 441 (808)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~ 441 (808)
..+..|+.+-+.-+++.-.
T Consensus 231 ~A~~~g~~~~v~~Ll~~g~ 249 (260)
T 3jxi_A 231 MAAKTGKIGIFQHIIRREI 249 (260)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhCC
Confidence 3345566665555555433
No 291
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.41 E-value=1.2e+02 Score=25.78 Aligned_cols=52 Identities=15% Similarity=0.081 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 046719 676 KALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK 727 (808)
Q Consensus 676 ~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 727 (808)
++..+|..|..+|+--... .|...+..+-..|++.+|.++|+..++.+-.|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 3667788888877765544 677777778888888888888888877766674
No 292
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=43.34 E-value=44 Score=30.38 Aligned_cols=17 Identities=0% Similarity=-0.329 Sum_probs=7.6
Q ss_pred HHHhcCCHHHHHHHHHH
Q 046719 388 GYCRTGDLNRAMLAIQQ 404 (808)
Q Consensus 388 ~~~~~g~~~~A~~~~~~ 404 (808)
..++.|+.+-+.-+++.
T Consensus 216 ~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 216 LAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHh
Confidence 33445555444444433
No 293
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=42.91 E-value=1.8e+02 Score=25.69 Aligned_cols=154 Identities=12% Similarity=0.022 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHH
Q 046719 132 LSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLI 211 (808)
Q Consensus 132 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 211 (808)
++.......+..+.+.|.. .+...+..++. .+|.......+.++.+.|+.+ +...+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 3555555556666666653 33344434433 245555666666666666533 3333333332 24555555666
Q ss_pred HHHHccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChh
Q 046719 212 SGFCKEKKIRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRME 291 (808)
Q Consensus 212 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 291 (808)
.++.+.|+.+ +...+..+.. .++..+-...+.++.+.|+.+. ...+..+.. .++..+-...+.++.+.+. .
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDERA-VEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 6666666533 3344444443 2455555556666666665433 333333322 2344444555555555544 3
Q ss_pred HHHHHHHHHHH
Q 046719 292 EAKSVCKEMEA 302 (808)
Q Consensus 292 ~A~~~~~~m~~ 302 (808)
++...+..+.+
T Consensus 174 ~~~~~L~~~l~ 184 (211)
T 3ltm_A 174 RVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 34444444443
No 294
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=42.82 E-value=2.2e+02 Score=27.33 Aligned_cols=25 Identities=8% Similarity=0.211 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 046719 522 YNMLIDGSCTMGRIKDAFKFFDEMV 546 (808)
Q Consensus 522 ~~~li~~~~~~g~~~~A~~~~~~~~ 546 (808)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4556777777777777777777653
No 295
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=40.25 E-value=3.9e+02 Score=28.95 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCC-CCChhhHHHHHHHHHc-
Q 046719 139 VLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRT-RPNVFVYNVLISGFCK- 216 (808)
Q Consensus 139 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~- 216 (808)
.....+.-.|+|+.|..++-+. . .+.+-...| ++...|-+.. -+.+..... .| ..-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~--~vdAVH~AI-aL~~~gLL~~----~~~lls~~~~~~-~lN~arLI~~Yt~~ 366 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----S--EMDAVHLAI-GLASLKLFKI----DSSTRLTKKPKR-DIRFANILANYTKS 366 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----C--HHHHHHHHH-HHHHTTC----------------------CHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----C--chhHHHHHH-HHHHcCCccC----CCcccccCCCcc-cccHHHHHHHHHHH
Confidence 4556677788888888876543 1 112222222 2333444432 111211110 11 2335667766664
Q ss_pred --cCCHhHHHHHHHHHH
Q 046719 217 --EKKIRDAEKLFDEMC 231 (808)
Q Consensus 217 --~g~~~~A~~~~~~m~ 231 (808)
..+..+|.++|--+.
T Consensus 367 F~~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 367 FRYSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTTTCHHHHHHHHHGGG
T ss_pred hhcCCHHHHHHHHHHHh
Confidence 467777777776663
No 296
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=39.40 E-value=2.1e+02 Score=28.89 Aligned_cols=7 Identities=0% Similarity=0.344 Sum_probs=3.0
Q ss_pred HhcCCHH
Q 046719 390 CRTGDLN 396 (808)
Q Consensus 390 ~~~g~~~ 396 (808)
+..|+.+
T Consensus 220 ~~~~~~~ 226 (437)
T 1n11_A 220 AKQNQVE 226 (437)
T ss_dssp HHTTCHH
T ss_pred HHcCCHH
Confidence 3444443
No 297
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=39.07 E-value=1.2e+02 Score=28.72 Aligned_cols=10 Identities=20% Similarity=0.189 Sum_probs=4.0
Q ss_pred HhcCCHHHHH
Q 046719 425 CELGEMDKAE 434 (808)
Q Consensus 425 ~~~g~~~~A~ 434 (808)
+..|..+-+.
T Consensus 169 ~~~g~~~~v~ 178 (285)
T 3kea_A 169 IKNGHVDMMI 178 (285)
T ss_dssp HHTTCHHHHH
T ss_pred HHcChHHHHH
Confidence 3344444333
No 298
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.98 E-value=1e+02 Score=27.80 Aligned_cols=22 Identities=5% Similarity=-0.145 Sum_probs=11.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 046719 421 IDKFCELGEMDKAEEWVKRMLE 442 (808)
Q Consensus 421 i~~~~~~g~~~~A~~~~~~~~~ 442 (808)
+....+.|+.+-+.-+++...+
T Consensus 214 l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHcCcHHHHHHHHHhhhc
Confidence 4445566777666665554433
No 299
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=36.90 E-value=51 Score=30.58 Aligned_cols=21 Identities=10% Similarity=0.010 Sum_probs=12.7
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 046719 457 DGYGRMGHFDKCFQILEEMEN 477 (808)
Q Consensus 457 ~~~~~~g~~~~a~~~~~~m~~ 477 (808)
...++.|+.+-+.-++++-..
T Consensus 230 ~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 230 MMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhCCC
Confidence 344566777766666665543
No 300
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=36.10 E-value=84 Score=27.48 Aligned_cols=12 Identities=8% Similarity=0.174 Sum_probs=4.9
Q ss_pred HHHHHHHHCCCC
Q 046719 400 LAIQQMENHGLA 411 (808)
Q Consensus 400 ~~~~~~~~~~~~ 411 (808)
++++.+.+.|..
T Consensus 159 ~~v~~Ll~~ga~ 170 (201)
T 3hra_A 159 DIVKLLMENGAD 170 (201)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHCCCC
Confidence 334444444433
No 301
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=35.32 E-value=3e+02 Score=27.77 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=9.6
Q ss_pred HHHHHHhcCChHHHHHHH
Q 046719 350 LLNALCKEGKVEIAEEIV 367 (808)
Q Consensus 350 l~~~~~~~g~~~~a~~~~ 367 (808)
.+...+..|+.+-+..++
T Consensus 215 ~L~~A~~~~~~~~~~~Ll 232 (437)
T 1n11_A 215 PLHIAAKQNQVEVARSLL 232 (437)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344455677765544443
No 302
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=34.75 E-value=1.5e+02 Score=28.53 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHH
Q 046719 313 SMLFDGYSKCGDGEGVMALYEELS 336 (808)
Q Consensus 313 ~~ll~~~~~~g~~~~a~~~~~~~~ 336 (808)
..++.=|...|+.++|.+.++++.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC
Confidence 456666666777777777777764
No 303
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=34.46 E-value=2.4e+02 Score=25.10 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=25.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcC
Q 046719 146 RCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIG 183 (808)
Q Consensus 146 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 183 (808)
|..+++.|+-++-+|++.|-.|.......++.+.-.-|
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 44678888888888888887766555555555554444
No 304
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.34 E-value=1.9e+02 Score=25.41 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=24.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcC
Q 046719 146 RCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIG 183 (808)
Q Consensus 146 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 183 (808)
|..+++.|+-++-+|++.|-.|.......++.+.-.-|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 44678888888888888877665555555555444433
No 305
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.29 E-value=78 Score=28.58 Aligned_cols=52 Identities=15% Similarity=0.006 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 046719 710 SEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIP 761 (808)
Q Consensus 710 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 761 (808)
+++..+|..|..+|+--. +..|...+..+...|++.+|..+|+..++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 466677777777776554 4455677777777888888888888877765554
No 306
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.49 E-value=3e+02 Score=31.54 Aligned_cols=132 Identities=14% Similarity=0.055 Sum_probs=71.5
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcC
Q 046719 104 ILLSILSSAKLPSEALQLYASTKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIG 183 (808)
Q Consensus 104 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 183 (808)
.++..|...|.++.|.++.... +.++..--.++++|...|++++|...|.++. .|+..+......
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~--------- 879 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV--------- 879 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG---------
T ss_pred HHHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc---------
Confidence 4566677777777666544322 3455555678888888899999998888763 232211110000
Q ss_pred ChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcC
Q 046719 184 DLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKKIRDAEKLFDEMCQRKLVPTRV----TYNTLVDGYCKVG 253 (808)
Q Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g 253 (808)
......++..... ......-|.-++..+-+.+-++-+.++-+...+.--.-|.. .|+.+.++.+..|
T Consensus 880 -~~~~~~ll~~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 -LREFQEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp -GHHHHHHHHHTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -hhhhhhccCcccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0001111111110 11122356677777777777777777776666532222322 4666666666554
No 307
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=31.08 E-value=3.9e+02 Score=26.24 Aligned_cols=26 Identities=8% Similarity=0.195 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046719 521 IYNMLIDGSCTMGRIKDAFKFFDEMV 546 (808)
Q Consensus 521 ~~~~li~~~~~~g~~~~A~~~~~~~~ 546 (808)
....++.-|...++.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 45667777888888888888887764
No 308
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.80 E-value=3.2e+02 Score=24.90 Aligned_cols=89 Identities=10% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH--CCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 046719 386 VSGYCRTGDLNRAMLAIQQMEN--HGLAP----NCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPNVKTNNTLIDGY 459 (808)
Q Consensus 386 i~~~~~~g~~~~A~~~~~~~~~--~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (808)
++.+....++++|.+++++..+ .++++ +.......+..-.....-.-+..+.+.+.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Q ss_pred HhcCChHHHHHHHHHHHH
Q 046719 460 GRMGHFDKCFQILEEMEN 477 (808)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~ 477 (808)
.+.|+.++|.++|-+...
T Consensus 102 ~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHHH
No 309
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.36 E-value=70 Score=28.88 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 046719 675 QKALVLHSEMVDQGIRPDKM-TYNSLIFGHLREGKLSEVKELVNDMKVKGLIP 726 (808)
Q Consensus 675 ~~A~~~~~~~~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 726 (808)
+++..+|..|..+|+.-... .|...+..+-..|++.+|..+|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45667777777776665443 56667777777777777777777776665566
No 310
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.60 E-value=3e+02 Score=24.20 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=21.9
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREG 707 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g 707 (808)
.+..+.+.|+-.+-+|++.| .|....-..++.+.-.-|
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 34567777777777777766 554444444444444444
No 311
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.27 E-value=2e+02 Score=23.76 Aligned_cols=58 Identities=12% Similarity=0.005 Sum_probs=29.9
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 719 MKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG 777 (808)
Q Consensus 719 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 777 (808)
+.+.|+.+++.=. .++..+...+..-.|.++++.+.+.++..+..+.+..+..|.+.|
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3445555443322 223333344555566666666665555555555555555555555
No 312
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.96 E-value=2.1e+02 Score=23.24 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=16.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 743 DFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG 777 (808)
Q Consensus 743 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 777 (808)
..-.|.++++.+.+.++..+..+.+.-+..|.+.|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555544444444444444444444444
No 313
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.12 E-value=2e+02 Score=23.95 Aligned_cols=59 Identities=14% Similarity=0.004 Sum_probs=31.4
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046719 719 MKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEGK 778 (808)
Q Consensus 719 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 778 (808)
+.+.|+.+++.= ..++..+...++.-.|.++++.+.+.++..+..+.+..+..|.+.|-
T Consensus 18 l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 444555443322 23344444455566666777666666665566666666666666553
No 314
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=27.06 E-value=1.6e+02 Score=24.42 Aligned_cols=57 Identities=9% Similarity=0.037 Sum_probs=30.3
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 719 MKVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG 777 (808)
Q Consensus 719 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 777 (808)
+.+.|+.++..=. .++..+...+ .-.|.++++.+.+.++..+..+.+.-+..|.+.|
T Consensus 10 L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4445555543321 2233333444 5566666666666666556666565556665555
No 315
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.05 E-value=1.5e+02 Score=30.83 Aligned_cols=67 Identities=12% Similarity=0.165 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCH--HH-HHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 046719 694 MTYNSLIFGHLREGKLSEVKELVNDMKVK-GLIPKA--DT-YNILVKGYCNLKDFGGAYIWYREMFENGFI 760 (808)
Q Consensus 694 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~--~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 760 (808)
..+|.++..|...+.++.|..+..+..-- ...+|. .. +..++..+.-.++|.+|.+.+..+....|.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 46888889999999999999998887410 001221 22 335677788889999999999888877655
No 316
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=26.24 E-value=3.1e+02 Score=23.48 Aligned_cols=27 Identities=11% Similarity=-0.197 Sum_probs=13.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046719 767 NELTNGLKQEGKLKEAQILCSEISIVG 793 (808)
Q Consensus 767 ~~l~~~l~~~g~~~~A~~~~~~~~~~~ 793 (808)
+.++..+...|..+||++.+..-.+..
T Consensus 118 ~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 118 SLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 344455555555555555555444433
No 317
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.21 E-value=2.2e+02 Score=23.71 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=30.0
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 719 MKVKGLIPKADTYNILVKGYCNLK-DFGGAYIWYREMFENGFIPSFCIYNELTNGLKQEG 777 (808)
Q Consensus 719 ~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 777 (808)
+.+.|+.++..=. .++..+...+ +.-.|.++++.+.+.++..+..+.+.-+..|.+.|
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3445555443322 2233333444 45556666666666555555555555555555555
No 318
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=26.20 E-value=2.1e+02 Score=25.51 Aligned_cols=21 Identities=5% Similarity=-0.173 Sum_probs=9.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 046719 389 YCRTGDLNRAMLAIQQMENHG 409 (808)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~ 409 (808)
.+..|+.+-+..+++.+.+.|
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHHhcC
Confidence 334455544444444444444
No 319
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=25.40 E-value=3.3e+02 Score=23.47 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=6.1
Q ss_pred HHHHHHHHHCCCCC
Q 046719 294 KSVCKEMEAHGFDP 307 (808)
Q Consensus 294 ~~~~~~m~~~g~~~ 307 (808)
.++.+.+++.|..+
T Consensus 94 ~~iv~~Ll~~Gadi 107 (186)
T 3t8k_A 94 TELCKIFLEKGADI 107 (186)
T ss_dssp HHHHHHHHHTTCCS
T ss_pred HHHHHHHHHCCCCC
Confidence 34444444444443
No 320
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.36 E-value=1.6e+02 Score=25.62 Aligned_cols=13 Identities=15% Similarity=0.097 Sum_probs=5.8
Q ss_pred HhcCChhHHHHHH
Q 046719 250 CKVGEFEKVSALR 262 (808)
Q Consensus 250 ~~~g~~~~a~~~~ 262 (808)
+..|+.+-+..++
T Consensus 80 ~~~~~~~~~~~Ll 92 (201)
T 3hra_A 80 GAQGRTEILAYML 92 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3445544444443
No 321
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.92 E-value=2.2e+02 Score=24.14 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCC--CHHHHHHHHH------HHHccCChhHHHHHHHHHHH
Q 046719 700 IFGHLREGKLSEVKELVNDMKVKGLIP--KADTYNILVK------GYCNLKDFGGAYIWYREMFE 756 (808)
Q Consensus 700 ~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 756 (808)
+..+...|++=+|-++++.+-...-.+ +...|..|+. ...+.|+...|..++.+++.
T Consensus 39 ~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 39 GVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
No 322
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.41 E-value=2.6e+02 Score=23.05 Aligned_cols=59 Identities=19% Similarity=0.118 Sum_probs=32.5
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCC
Q 046719 125 TKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGD 184 (808)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 184 (808)
+.+.|.+.+.. -..++..+...+..-.|.++++.+.+.++..+..|--..+..+...|-
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34455554443 344555555555555566666666666555555555555555555553
No 323
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=24.19 E-value=5.1e+02 Score=25.47 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC----hhhHHHHHHHHHccCC-HhHHHHHHHHHHhCCC
Q 046719 172 YGKAVQAAVKIGDLKRACEIFDGMEKSRTRPN----VFVYNVLISGFCKEKK-IRDAEKLFDEMCQRKL 235 (808)
Q Consensus 172 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~ 235 (808)
...+|.-|...|+.++|...++++.. |+ .+++..+..++-+... -+.+..++..+...++
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ 79 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGI 79 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCC
Confidence 45677778888888888888888743 32 2334444444333211 2334455555555443
No 324
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.09 E-value=76 Score=20.86 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=19.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHH
Q 046719 749 IWYREMFENGFIPSFCIYNELTNGLKQEGK--LKEAQILCSEI 789 (808)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~--~~~A~~~~~~~ 789 (808)
+.++.+++.|++++ ..-.++.+.|. .+.|..++.+|
T Consensus 11 qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 11 QMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 33445555555532 22345555555 66666666665
No 325
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.84 E-value=5.6e+02 Score=29.32 Aligned_cols=131 Identities=14% Similarity=0.122 Sum_probs=77.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHHccCC
Q 046719 140 LLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGDLKRACEIFDGMEKSRTRPNVFVYNVLISGFCKEKK 219 (808)
Q Consensus 140 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 219 (808)
++..+...|.++.|..+..... .+...--.+.++|...|++++|..+|+++.. |+..+......
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-----~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~---------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAV---------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-----SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGG----------
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccc----------
Confidence 6677777888887766543332 2544445577778899999999999988653 23221111000
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHccC
Q 046719 220 IRDAEKLFDEMCQRKLVPTRVTYNTLVDGYCKVGEFEKVSALRERMKRDKVEVSL----VMFNSLLGGFCKAK 288 (808)
Q Consensus 220 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g 288 (808)
......++.... . ......-|.-++..+-+.+-++.+.++-+..++.-..-|. ..|+.+.++.+..|
T Consensus 880 ~~~~~~ll~~~e-~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAEKYH-H-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHHHTT-T-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCccc-c-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 011111222111 1 0112336788889999999999999988888765322233 36777777776654
No 326
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.69 E-value=1.7e+02 Score=24.76 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=29.5
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC
Q 046719 720 KVKGLIPKADTYNILVKGYCNLKDFGGAYIWYREMFEN--GFIPSFCIYNELTNGLKQEG 777 (808)
Q Consensus 720 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~g 777 (808)
.+.|+..+..= ..++..+...++.-.|.++++.+.+. ++..+..+.+.-+..|.+.|
T Consensus 25 ~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 25 RQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 34455444322 23344444555556666666666555 55555555555555555555
No 327
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.44 E-value=2.1e+02 Score=25.45 Aligned_cols=20 Identities=0% Similarity=0.130 Sum_probs=10.5
Q ss_pred HHHhcCCHhHHHHHHHHHHH
Q 046719 702 GHLREGKLSEVKELVNDMKV 721 (808)
Q Consensus 702 ~~~~~g~~~~A~~~~~~~~~ 721 (808)
.|.+.|.+++|.+++++...
T Consensus 123 VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHST
T ss_pred HHHHhcchHHHHHHHHHHhc
Confidence 44555555555555555443
No 328
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.43 E-value=1.4e+02 Score=27.27 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=8.1
Q ss_pred HHhcCCHHHHHHHHHH
Q 046719 424 FCELGEMDKAEEWVKR 439 (808)
Q Consensus 424 ~~~~g~~~~A~~~~~~ 439 (808)
.+..|..+-+.-+++.
T Consensus 228 A~~~g~~~~v~~Ll~~ 243 (256)
T 2etb_A 228 AAKEGKIEIFRHILQR 243 (256)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhC
Confidence 3445555555555443
No 329
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.45 E-value=1.9e+02 Score=25.78 Aligned_cols=16 Identities=19% Similarity=0.038 Sum_probs=7.6
Q ss_pred HHhcCChHHHHHHHHH
Q 046719 179 AVKIGDLKRACEIFDG 194 (808)
Q Consensus 179 ~~~~g~~~~A~~~~~~ 194 (808)
.++.|+++....++..
T Consensus 13 A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 13 LAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3445555554444443
No 330
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.36 E-value=3.6e+02 Score=23.72 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=25.2
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046719 669 AEHGDVQKALVLHSEMVDQGIRPDKMTYNSLIFGHLREG 707 (808)
Q Consensus 669 ~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g 707 (808)
.+..+.+.|+-.+-+|++.|..|..+.-..++.+.-.-|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 455678888888888888776666555444554444444
No 331
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.26 E-value=2.7e+02 Score=27.16 Aligned_cols=215 Identities=15% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhC
Q 046719 243 NTLVDGYCKVGEFEKVSALRERMKRDKVEVSLVMFNSLLGGFCKAKRMEEAKSVCKEMEAHGFDPDGFTYSMLFDGYSKC 322 (808)
Q Consensus 243 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 322 (808)
.+.+...++.|+.+.+..+++. ...+......-...+...+..|+. ++++.+.+.|..++...-.+.+...+..
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCV----DTAKYLASVGEVHSLWHGQKPIHLAVMA 94 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCH----HHHHHHHHHCCCCCCBTTBCHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCccccCCCCHHHHHHHc
Q ss_pred CChHHHHHHHHHHHhCCCCcCh----------------------hcHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCC
Q 046719 323 GDGEGVMALYEELSGRGFRINS----------------------YTCSILLNALCKEG--KVEIAEEIVGKEIENGLVPD 378 (808)
Q Consensus 323 g~~~~a~~~~~~~~~~~~~~~~----------------------~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~ 378 (808)
|..+-+..+++.....|..++. .+ .+...+..| +.+-+..+++. ...+...
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t---~L~~A~~~g~~~~~~v~~Ll~~--ga~~~~~ 169 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQT---ALHWCVGLGPEYLEMIKILVQL--GASPTAK 169 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCC---HHHHHHHSCGGGHHHHHHHHHH--TCCTTCC
T ss_pred CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCC---HHHHHHHcCCchHHHHHHHHHc--CCCCccc
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHH
Q 046719 379 EVMFNTIVSGYCRTGDLNRAMLAIQQMEN-----HGLAPNCITFNTLIDKFCELGEMDKAEEWVKRMLEKGVSPN--VKT 451 (808)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 451 (808)
...-.+.+...+..|+.+-+..+++.-.. .+.. |..-.+.|..+..... .++.+.+++.|..++ ...
T Consensus 170 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~~~g~t~L~~A~~~g~-----~~~v~~Ll~~gad~~~~d~~ 243 (364)
T 3ljn_A 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYA-NKQGNSHLHWAILINW-----EDVAMRFVEMGIDVNMEDNE 243 (364)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCC-CTTCCCTTHHHHTTTC-----HHHHHHHHTTTCCTTCCCTT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccc-CCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCC
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 046719 452 NNTLIDGYGRMGHFDKCFQILEE 474 (808)
Q Consensus 452 ~~~l~~~~~~~g~~~~a~~~~~~ 474 (808)
-.+-+...++.|+.+-+.-+++.
T Consensus 244 g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 244 HTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp SCCHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHhChHHHHHHHHHc
No 332
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=21.65 E-value=1.3e+02 Score=27.95 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=9.6
Q ss_pred HccCCHhHHHHHHHHHHhCC
Q 046719 215 CKEKKIRDAEKLFDEMCQRK 234 (808)
Q Consensus 215 ~~~g~~~~A~~~~~~m~~~~ 234 (808)
++.|+.+....+++...+.+
T Consensus 21 ~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHTTCSSTTTTHHHHHHHSC
T ss_pred HHcCCHHHHHHHHHHHhhcc
Confidence 34455555555555444433
No 333
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.34 E-value=2.4e+02 Score=25.01 Aligned_cols=14 Identities=7% Similarity=0.135 Sum_probs=5.8
Q ss_pred HhcCChhHHHHHHH
Q 046719 250 CKVGEFEKVSALRE 263 (808)
Q Consensus 250 ~~~g~~~~a~~~~~ 263 (808)
++.|+.+....+++
T Consensus 14 ~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 14 AYSGKLDELKERIL 27 (231)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 33444444444433
No 334
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=20.92 E-value=4.8e+02 Score=23.75 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Q 046719 557 FNALINGLCKKGRVMEAEDMLPQITSSGLNPDVITYNSLISGYSS-LGSSQKCLELYENMK 616 (808)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 616 (808)
...++....+.+++++..+....+.+.+...+..-.|.|--+|-. -|....+++++..+.
T Consensus 11 ~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissie 71 (236)
T 3iqu_A 11 LIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIE 71 (236)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 334455566677777777777777776666666555555555532 344445555555444
No 335
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.82 E-value=2.9e+02 Score=22.96 Aligned_cols=59 Identities=12% Similarity=-0.020 Sum_probs=32.2
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcCC
Q 046719 125 TKADGTRLSLDSINVLLECLVRCNQYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIGD 184 (808)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 184 (808)
+.+.|.+.+. .-..++..+...+..-.|.++++.+.+.++..+..|--..+..+...|-
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 4445544333 2445555555555566666777766666555555555555555655553
No 336
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.68 E-value=4e+02 Score=22.83 Aligned_cols=29 Identities=14% Similarity=0.069 Sum_probs=15.9
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 046719 281 LGGFCKAKRMEEAKSVCKEMEAHGFDPDG 309 (808)
Q Consensus 281 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 309 (808)
+...+..|..+.-.++.+.+++.|..++.
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 33444555555555566666666665543
No 337
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.64 E-value=2.8e+02 Score=21.02 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=16.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 046719 712 VKELVNDMKVKGLIPKADTYNILVKGYCNLK 742 (808)
Q Consensus 712 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 742 (808)
|.++.+++...|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3444455555556665555555555554444
No 338
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.56 E-value=2.5e+02 Score=22.79 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=28.5
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHhcC
Q 046719 126 KADGTRLSLDSINVLLECLVRCN-QYDRALDLFDEIVCMGFRPDKFTYGKAVQAAVKIG 183 (808)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 183 (808)
.+.|.+.+.. -..++..+...+ ..-.|.++++.+.+.++..+..|--..+..+...|
T Consensus 10 ~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 10 RKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3444444432 334444454444 45556666666665555555555555555555554
No 339
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.52 E-value=1.8e+02 Score=26.66 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=10.4
Q ss_pred HHHhcCChHHHHHHHHHH
Q 046719 458 GYGRMGHFDKCFQILEEM 475 (808)
Q Consensus 458 ~~~~~g~~~~a~~~~~~m 475 (808)
..++.|+.+-+.-+++.-
T Consensus 227 ~A~~~g~~~~v~~Ll~~g 244 (256)
T 2etb_A 227 LAAKEGKIEIFRHILQRE 244 (256)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhCC
Confidence 345567766665555543
No 340
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=20.27 E-value=2.7e+02 Score=28.94 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046719 695 TYNSLIFGHLREGKLSEVKELVNDMKVKGLIPK-ADTYNILVKGYCNLKDFGGAYIWYREMFENGFIPSFCIYNELTNGL 773 (808)
Q Consensus 695 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 773 (808)
....|+....-...++.|..+|.++.. +.|+ -..|+.|+-.....|+.-+|.-+|-+.+.. ..|-+.+...|...+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~--~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHH--hCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHH
Confidence 344566677777788999999999988 5664 567888888888899999999998888864 356777777776666
Q ss_pred Hh
Q 046719 774 KQ 775 (808)
Q Consensus 774 ~~ 775 (808)
.+
T Consensus 231 ~~ 232 (497)
T 1ya0_A 231 SK 232 (497)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 341
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.13 E-value=2.3e+02 Score=23.70 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=10.8
Q ss_pred HHHHHHHccCCHhHHHHHHHHH
Q 046719 209 VLISGFCKEKKIRDAEKLFDEM 230 (808)
Q Consensus 209 ~l~~~~~~~g~~~~A~~~~~~m 230 (808)
.++.-|...|+.++|...++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444445555555555544
Done!