BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046720
         (455 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ZX3|A Chain A, Crystal Structure And Domain Rotation Of Ntpdase1 Cd39
 pdb|3ZX3|B Chain B, Crystal Structure And Domain Rotation Of Ntpdase1 Cd39
 pdb|3ZX3|C Chain C, Crystal Structure And Domain Rotation Of Ntpdase1 Cd39
 pdb|3ZX3|D Chain D, Crystal Structure And Domain Rotation Of Ntpdase1 Cd39
          Length = 452

 Score = 33.9 bits (76), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 9/84 (10%)

Query: 76  KRRCSKVREGCKAKLAVVKSK-------SGTYVVSVFEEDHNHPLTTPRRVHLLRSHRNV 128
           K  CSK  E  KA    VK K       SGTY++S+  + +N   T+  ++H +   ++ 
Sbjct: 363 KNFCSKPWEEVKASYPTVKEKYLSEYCFSGTYILSLLLQGYNFTGTSWDQIHFMGKIKD- 421

Query: 129 SEVKRSLTHQLAAAN-IPIHQQIS 151
           S    +L + L   N IP  Q +S
Sbjct: 422 SNAGWTLGYMLNLTNMIPAEQPLS 445


>pdb|3ZX0|A Chain A, Ntpdase1 In Complex With Heptamolybdate
 pdb|3ZX0|B Chain B, Ntpdase1 In Complex With Heptamolybdate
 pdb|3ZX0|C Chain C, Ntpdase1 In Complex With Heptamolybdate
 pdb|3ZX0|D Chain D, Ntpdase1 In Complex With Heptamolybdate
 pdb|3ZX2|A Chain A, Ntpdase1 In Complex With Decavanadate
 pdb|3ZX2|B Chain B, Ntpdase1 In Complex With Decavanadate
 pdb|3ZX2|C Chain C, Ntpdase1 In Complex With Decavanadate
 pdb|3ZX2|D Chain D, Ntpdase1 In Complex With Decavanadate
          Length = 452

 Score = 33.9 bits (76), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 9/84 (10%)

Query: 76  KRRCSKVREGCKAKLAVVKSK-------SGTYVVSVFEEDHNHPLTTPRRVHLLRSHRNV 128
           K  CSK  E  KA    VK K       SGTY++S+  + +N   T+  ++H +   ++ 
Sbjct: 363 KNFCSKPWEEVKASYPTVKEKYLSEYCFSGTYILSLLLQGYNFTGTSWDQIHFMGKIKD- 421

Query: 129 SEVKRSLTHQLAAAN-IPIHQQIS 151
           S    +L + L   N IP  Q +S
Sbjct: 422 SNAGWTLGYMLNLTNMIPAEQPLS 445


>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
           Bacillus Cereus
 pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
           Bacillus Cereus
 pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
           From Bacillus Cereus In Complex Sah
 pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
           From Bacillus Cereus In Complex Sah
          Length = 223

 Score = 29.6 bits (65), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 194 QLEKEKNSAFTFT-IESDNENRITHCFWADATSRRGYNSFGDVVV 237
           Q+E EK   F F  I++D +N   +  WA   SR G    GD VV
Sbjct: 125 QIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVV 169


>pdb|2XWT|B Chain B, Crystal Structure Of The Tsh Receptor In Complex With A
           Blocking Type Tshr Autoantibody
          Length = 214

 Score = 29.6 bits (65), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 261 GQTTVFACSFLSDETTESFVWLFEQFKKAMPGDLPKMIITDQD 303
           GQ    +CS  S +   ++V  ++QF    PG  PK++I D +
Sbjct: 15  GQKVTISCSGSSSDIGSNYVSWYQQF----PGTAPKLLIYDNN 53


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,661,483
Number of Sequences: 62578
Number of extensions: 570084
Number of successful extensions: 1308
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1308
Number of HSP's gapped (non-prelim): 5
length of query: 455
length of database: 14,973,337
effective HSP length: 102
effective length of query: 353
effective length of database: 8,590,381
effective search space: 3032404493
effective search space used: 3032404493
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)