Query 046720
Match_columns 455
No_of_seqs 213 out of 1821
Neff 9.8
Searched_HMMs 13730
Date Mon Mar 25 06:05:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046720.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046720hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wj2a_ g.79.1.1 (A:) WRKY DNA 97.0 0.00052 3.8E-08 45.6 5.4 57 38-113 12-69 (71)
2 d1cxqa_ c.55.3.2 (A:) Retrovir 75.0 5.3 0.00039 29.8 7.8 69 234-307 8-76 (147)
3 d1exqa_ c.55.3.2 (A:) Retrovir 75.0 2.8 0.00021 31.8 6.2 67 234-310 4-70 (154)
4 d1c6va_ c.55.3.2 (A:) Retrovir 53.0 17 0.0012 27.2 6.8 63 234-306 5-67 (159)
5 d1tqza1 b.55.1.11 (A:1-133) Ne 51.3 10 0.00073 27.5 4.6 88 199-290 39-130 (133)
6 d2bw3a2 c.55.3.12 (A:163-609) 49.1 36 0.0027 29.6 9.7 93 235-332 14-113 (447)
7 d1ijwc_ a.4.1.2 (C:) HIN recom 39.3 14 0.001 21.5 3.1 28 126-153 4-31 (47)
8 d1x9ba_ a.10.2.1 (A:) Hypothet 32.9 12 0.0009 21.4 2.0 44 345-389 8-51 (53)
9 d2glia1 g.37.1.1 (A:103-134) F 30.1 21 0.0015 18.5 2.4 17 17-33 9-25 (32)
10 d1bcoa2 c.55.3.3 (A:258-480) m 27.7 45 0.0033 26.2 5.8 69 234-304 7-82 (223)
11 d1j3ma_ d.129.7.1 (A:) Hypothe 25.6 84 0.0061 22.0 6.4 74 22-100 8-88 (127)
12 d1pdnc_ a.4.1.5 (C:) Paired pr 24.5 18 0.0013 25.9 2.3 70 124-203 13-93 (123)
13 d1yioa1 a.4.6.2 (A:131-200) Re 24.1 33 0.0024 21.5 3.3 56 127-193 12-67 (70)
14 d1u04a2 c.55.3.10 (A:324-770) 23.0 1.3E+02 0.0094 26.6 8.2 79 235-313 231-319 (447)
15 d1qhka_ d.100.1.2 (A:) N-termi 22.5 20 0.0014 20.8 1.7 13 19-31 34-46 (47)
16 d1a04a1 a.4.6.2 (A:150-216) Ni 20.2 42 0.0031 20.7 3.2 58 127-195 6-63 (67)
No 1
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=97.04 E-value=0.00052 Score=45.57 Aligned_cols=57 Identities=26% Similarity=0.469 Sum_probs=42.2
Q ss_pred cCeEEEEeceecCCCCcEEEEEEEecCCCCcccccccccccccccccCCccEEEEEEcc-CCcEEEEEEecCCCCCC
Q 046720 38 VGFSVRINSSRKSHRGEIVRKEYVCSKEGATTKEVVEKKRRCSKVREGCKAKLAVVKSK-SGTYVVSVFEEDHNHPL 113 (455)
Q Consensus 38 ~gf~i~~~~s~~~~~~~~~~~~~~C~r~g~~~~~~~~~~r~~~s~~~gCpa~i~~~~~~-~~~w~v~~~~~~HNH~~ 113 (455)
=||.+|+--.+.-++....+-+|.|+.. ||||+=.+.... ++.-.++.+..+|||++
T Consensus 12 DGy~WRKYGQK~ikgs~~pRsYYrCt~~-------------------~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~ 69 (71)
T d1wj2a_ 12 DGYRWRKYGQKVVKGNPYPRSYYKCTTP-------------------GCGVRKHVERAATDPKAVVTTYEGKHNHDL 69 (71)
T ss_dssp SSSCBCCCEEECCTTCSSCEEEEEEECS-------------------SCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred CCcEecccCceeccCCCCceEEEEcccc-------------------CCCCcceEEEEcCCCCEEEEEEeeEeCCCC
Confidence 3666665555544444455778999964 599999998887 77778888999999975
No 2
>d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}
Probab=74.98 E-value=5.3 Score=29.79 Aligned_cols=69 Identities=14% Similarity=0.051 Sum_probs=44.1
Q ss_pred cEEEEeeeeccccCCceeeeEEEEeeCCcceeehhhhccCcchhhHHHHHHHHHHHCCCCCCceEecCcCHHHH
Q 046720 234 DVVVFDTTYNTNKYGMIFAPFIGVNNHGQTTVFACSFLSDETTESFVWLFEQFKKAMPGDLPKMIITDQDPAIT 307 (455)
Q Consensus 234 ~v~~~D~t~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~p~~ii~D~~~~~~ 307 (455)
+++.+|-|+.....+. -+..+.+|..-+ .+.++ .+..++.......|..+....| .|..|.||......
T Consensus 8 ~~w~~D~~~~~~~~~~-~~l~v~vD~~Sr-~i~~~-~~~~~t~~~~~~~l~~~~~~~g--~p~~i~sDnG~~F~ 76 (147)
T d1cxqa_ 8 QIWQTDFTLEPRMAPR-SWLAVTVDTASS-AIVVT-QHGRVTSVAAQHHWATAIAVLG--RPKAIKTDNGSCFT 76 (147)
T ss_dssp CEEEEEEEECGGGTTS-CEEEEEEETTTC-CEEEE-EESSCCHHHHHHHHHHHHHHHC--CCSEEECCSCHHHH
T ss_pred CEEEEEEEEecCCCCe-EEEEEEEecccc-eeccc-ccCccchHHHHHHHHHHHHHhC--CCeEEEeccccccc
Confidence 6788888877543333 344556676544 33433 4666777766555655555544 58999999988765
No 3
>d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=74.96 E-value=2.8 Score=31.84 Aligned_cols=67 Identities=19% Similarity=0.145 Sum_probs=45.2
Q ss_pred cEEEEeeeeccccCCceeeeEEEEeeCCcceeehhhhccCcchhhHHHHHHHHHHHCCCCCCceEecCcCHHHHHHH
Q 046720 234 DVVVFDTTYNTNKYGMIFAPFIGVNNHGQTTVFACSFLSDETTESFVWLFEQFKKAMPGDLPKMIITDQDPAITKAI 310 (455)
Q Consensus 234 ~v~~~D~t~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~p~~ii~D~~~~~~~ai 310 (455)
.++.+|-|+..++ +.++.+|..- .++.++ .+.+++.+....+|..+... ..|+.|.||......++.
T Consensus 4 g~W~~D~~~~~~k-----~ilv~vD~~S-r~~~~~-~~~~~~~~~v~~~l~~~~~~---~~p~~I~sDnG~eF~s~~ 70 (154)
T d1exqa_ 4 GIWQLDCTHLEGK-----VILVAVHVAS-GYIEAE-VIPAETGQETAYFLLKLAGR---WPVKTIHTDNGSNFTGAT 70 (154)
T ss_dssp GEEEEEEEEETTE-----EEEEEEETTT-TEEEEE-EESSSSHHHHHHHHHHHHHH---SCCCEEECCCCGGGTSHH
T ss_pred CceeeEEEEECCE-----EEEEEEECcC-CcEEEE-EecCcchHHHHhhhhhheec---cCCCEEEEcCCccccchh
Confidence 3788898887654 3456677764 344544 45667777777777766554 348899999988765433
No 4
>d1c6va_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Simian immunodeficiency virus [TaxId: 11723]}
Probab=52.97 E-value=17 Score=27.18 Aligned_cols=63 Identities=14% Similarity=0.053 Sum_probs=39.2
Q ss_pred cEEEEeeeeccccCCceeeeEEEEeeCCcceeehhhhccCcchhhHHHHHHHHHHHCCCCCCceEecCcCHHH
Q 046720 234 DVVVFDTTYNTNKYGMIFAPFIGVNNHGQTTVFACSFLSDETTESFVWLFEQFKKAMPGDLPKMIITDQDPAI 306 (455)
Q Consensus 234 ~v~~~D~t~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~p~~ii~D~~~~~ 306 (455)
-++.+|-|+..++ +.++.+|.. ...+.++ .+.+++.+....+|..+... ..|..|.||.....
T Consensus 5 g~W~~D~t~~~~k-----~il~~vD~~-Sr~~~~~-~~~~~~a~~v~~~l~~~~~~---~~~~~I~sDnG~~F 67 (159)
T d1c6va_ 5 GTWQMDCTHLEGK-----IVIVAVHVA-SGFIEAE-VIPQETGRQTALFLLKLAGR---WPITHLHTDNGANF 67 (159)
T ss_dssp TEEEEEEEEETTE-----EEEEEECTT-SCCEEEE-ECSSCSHHHHHHHHHHHHTT---SCCCEEECCCCSST
T ss_pred CceeeEEEEECCE-----EEEEEEECC-CCeEEEE-EeeccCHHHHHHHHHHHhhc---cCCceeEecCCCcc
Confidence 3678899987654 344455555 4455655 55666777666666554332 34567899987654
No 5
>d1tqza1 b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=51.28 E-value=10 Score=27.55 Aligned_cols=88 Identities=11% Similarity=0.127 Sum_probs=63.1
Q ss_pred cCCCeEEEEeecCCCceeeeEecccccchhhhhcC----cEEEEeeeeccccCCceeeeEEEEeeCCcceeehhhhccCc
Q 046720 199 KNSAFTFTIESDNENRITHCFWADATSRRGYNSFG----DVVVFDTTYNTNKYGMIFAPFIGVNNHGQTTVFACSFLSDE 274 (455)
Q Consensus 199 ~~p~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~----~v~~~D~t~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e 274 (455)
.+|.|.-.+.+-+.|....|-+..+..-++|..+| +-..|..+-..++| +++-..|++|+...+|.+|-...
T Consensus 39 ~~~~wtgrlrv~~~g~~~~I~LeD~~tgeLFA~~P~~~~~~~aVE~v~DSSRY----FvlRv~d~~Gr~AfiGiGF~dR~ 114 (133)
T d1tqza1 39 DQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRY----FVIRIQDGTGRSAFIGIGFTDRG 114 (133)
T ss_dssp SSSCEEEEEEEECCSSSEEEEEECSSCCSSCEEEEECSSCCCCEEECTTCCSC----EEEEEEETTTEEEEEEEECSCHH
T ss_pred CCcceEEEEEEEEeCCeEEEEEecCCCcceEEeCccCCCCCcceEEeccCcce----EEEEEECCCCcEEEEEeeecccC
Confidence 45666667777666766677777777888887665 12334444444444 45666789999999999999999
Q ss_pred chhhHHHHHHHHHHHC
Q 046720 275 TTESFVWLFEQFKKAM 290 (455)
Q Consensus 275 ~~~~~~~~l~~~~~~~ 290 (455)
+.-+|.-.|+...+.+
T Consensus 115 dAFDFnvaLqDh~k~~ 130 (133)
T d1tqza1 115 DAFDFNVSLQDHFKWV 130 (133)
T ss_dssp HHHHHHHHHHHHHSCS
T ss_pred cccchhhHHHHHHHHH
Confidence 9999998888766543
No 6
>d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]}
Probab=49.12 E-value=36 Score=29.61 Aligned_cols=93 Identities=16% Similarity=0.150 Sum_probs=54.9
Q ss_pred EEEEee-eeccccCCceeeeEEEEeeCCc--ceeehhhhccC--cchhhHHHHHHHHHHHCCC--CCCceEecCcCHHHH
Q 046720 235 VVVFDT-TYNTNKYGMIFAPFIGVNNHGQ--TTVFACSFLSD--ETTESFVWLFEQFKKAMPG--DLPKMIITDQDPAIT 307 (455)
Q Consensus 235 v~~~D~-t~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~--e~~~~~~~~l~~~~~~~~~--~~p~~ii~D~~~~~~ 307 (455)
-+.+|+ |.......+-.+++.-++ ++. ...+|+.-+.. -+.++....+..+.+..+. .....+++|+...+.
T Consensus 14 s~~~D~Wts~~~~~~~l~v~~~yi~-~~~~~~~~L~~~~~~~~~~tg~~i~~~l~~~l~~~~i~~~~~~~~~~D~a~n~~ 92 (447)
T d2bw3a2 14 SATIDLWTDNYIKRNFLGVTLHYHE-NNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGANVV 92 (447)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEE-TTEEEEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEEECCCHHHH
T ss_pred EEEEEeecCCCCCeEEEEEEEEEEE-CCceeEEEEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCcceEEEEEcCCcHhhH
Confidence 356677 543333333222232333 343 35566654543 3567777777666665443 345568999997765
Q ss_pred HHHHhhCCcCccchhhhHHHHHHHh
Q 046720 308 KAISETLPNTFHRYCIWHILNKFSD 332 (455)
Q Consensus 308 ~ai~~vfp~~~~~~C~~Hi~~~~~~ 332 (455)
. .+++..+..|.-|.+.-+-.
T Consensus 93 ~----~~~~~~~i~C~aH~Lnl~v~ 113 (447)
T d2bw3a2 93 K----SLANNIRINCSSHLLSNVLE 113 (447)
T ss_dssp H----HTTTSEEEECHHHHHHHHHH
T ss_pred H----HhhccccccchhhhhhhhhH
Confidence 4 46778888999997766543
No 7
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=39.35 E-value=14 Score=21.48 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=23.4
Q ss_pred CCCCHHHHHhHHHHhhcCCCcchhhHHH
Q 046720 126 RNVSEVKRSLTHQLAAANIPIHQQISVL 153 (455)
Q Consensus 126 r~ls~~~~~~i~~l~~~g~~~~~I~~~l 153 (455)
+.+++++.+.+..+...|.+..+|...+
T Consensus 4 ~~lt~~q~~~a~~l~~~G~s~~~iA~~~ 31 (47)
T d1ijwc_ 4 RAINKHEQEQISRLLEKGHPRQQLAIIF 31 (47)
T ss_dssp CSSCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 5789999999999999999877766654
No 8
>d1x9ba_ a.10.2.1 (A:) Hypothetical membrane protein Ta0354, soluble domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=32.87 E-value=12 Score=21.43 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=30.1
Q ss_pred hHHhhhccCCCHHHHHHHHHHHHHHcCCCchHHHHHHHhhccccc
Q 046720 345 DFQKCIWKSLSRDDFDRNWLEIIEKGKLRDNAWLKSVFEIRSKWV 389 (455)
Q Consensus 345 ~~~~~~~~~~s~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~W~ 389 (455)
.|.. +..+++..+|....+++...-..-...|...+-..++.|-
T Consensus 8 kFEs-~INS~SK~~FV~NL~ELE~la~kLGk~Y~~qLe~~K~kWk 51 (53)
T d1x9ba_ 8 KFES-MINSPSKSVFVRNLNELEALAVRLGKSYRIQLDQAKEKWK 51 (53)
T ss_dssp HHHH-HHHSCCHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHC
T ss_pred HHHH-HHcCchHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 3555 3478899999999888765321123567777777788884
No 9
>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.06 E-value=21 Score=18.50 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=14.8
Q ss_pred CCCccCCHHHHHHHHHH
Q 046720 17 LGQEFVLLDDVHEFYNE 33 (455)
Q Consensus 17 ~g~~F~s~~e~~~~~~~ 33 (455)
-+++|+|-|++-..++.
T Consensus 9 C~~eFdtQd~LV~Hinn 25 (32)
T d2glia1 9 CSQEFDSQEQLVHHINS 25 (32)
T ss_dssp CCCBCSCHHHHHHHHHH
T ss_pred cccccCCHHHHHHHccc
Confidence 47899999999998875
No 10
>d1bcoa2 c.55.3.3 (A:258-480) mu transposase, core domain {Bacteriophage mu [TaxId: 10677]}
Probab=27.70 E-value=45 Score=26.21 Aligned_cols=69 Identities=9% Similarity=-0.111 Sum_probs=41.0
Q ss_pred cEEEEeeeecc-------ccCCceeeeEEEEeeCCcceeehhhhccCcchhhHHHHHHHHHHHCCCCCCceEecCcCH
Q 046720 234 DVVVFDTTYNT-------NKYGMIFAPFIGVNNHGQTTVFACSFLSDETTESFVWLFEQFKKAMPGDLPKMIITDQDP 304 (455)
Q Consensus 234 ~v~~~D~t~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~p~~ii~D~~~ 304 (455)
++|.+|++-.. +.-..|.++ +.+|.. ...++||.+...++.+....+|.......+...+..+.+|...
T Consensus 7 ~~v~~D~~~~dv~~~~~dg~~~Rp~l~-~~iD~~-SR~Ilg~~i~~~~s~~~v~~~l~~a~~~~~~p~~~~~~~DnG~ 82 (223)
T d1bcoa2 7 QWINGDGYLHNVFVRWFNGDVIRPKTW-FWQDVK-TRKILGWRCDVSENIDSIRLSFMDVVTRYGIPEDFHITIDNTR 82 (223)
T ss_dssp TEEEEEEEECSBCEECTTSCEECCEEE-EEEETT-TCCEEEEEEESSCCHHHHHHHHHHHHHHHCEESSCEEECCCTT
T ss_pred eeEEcCCcEEEEEEECCCCCCceeEEE-EEEECC-CCcEEEEEEeccCCHHHHHHHHHHHHHhhCCCcccEEeecCCc
Confidence 45666666542 223334322 233333 4567888888888888877777766555454456667788643
No 11
>d1j3ma_ d.129.7.1 (A:) Hypothetical protein TT1751 (TTHA1732) {Thermus thermophilus HB8 [TaxId: 300852]}
Probab=25.62 E-value=84 Score=21.97 Aligned_cols=74 Identities=9% Similarity=0.031 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHhcccCeEEEEeceec------C-CCCcEEEEEEEecCCCCcccccccccccccccccCCccEEEEEE
Q 046720 22 VLLDDVHEFYNEYAKKVGFSVRINSSRK------S-HRGEIVRKEYVCSKEGATTKEVVEKKRRCSKVREGCKAKLAVVK 94 (455)
Q Consensus 22 ~s~~e~~~~~~~ya~~~gf~i~~~~s~~------~-~~~~~~~~~~~C~r~g~~~~~~~~~~r~~~s~~~gCpa~i~~~~ 94 (455)
.|.+|+...+..-.+.+||.|...-.-. . .+-..+++...|+-..-. .--...+....-||.+|.+..
T Consensus 8 ~sf~e~~~~l~~al~~~G~~v~~~~d~~~~~~~~~~~~~~~~~i~~~cnp~~a~-----~~l~~~p~~g~~lPcri~v~e 82 (127)
T d1j3ma_ 8 ATLAEARAQVEAALKEEGFGILTEIDVAATLKAKLGLEKPPYLILGACNPNLAA-----RALEALPEIGLLLPCNVVLRE 82 (127)
T ss_dssp SCHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHCCCCCCEEEEEEECHHHHH-----HHHHHCGGGGGGCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEeCHHHHHHhccccCCCCeEEEEECChHHHH-----HHHHhCHHHHhhCCeEEEEEE
Confidence 3889999999999999999988654411 1 123356788889853211 000233456677999999998
Q ss_pred ccCCcE
Q 046720 95 SKSGTY 100 (455)
Q Consensus 95 ~~~~~w 100 (455)
..++.|
T Consensus 83 ~~~~~~ 88 (127)
T d1j3ma_ 83 AEEGVE 88 (127)
T ss_dssp ETTEEE
T ss_pred eCCceE
Confidence 765544
No 12
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=24.47 E-value=18 Score=25.91 Aligned_cols=70 Identities=11% Similarity=0.053 Sum_probs=44.0
Q ss_pred ccCCCCHHHHHhHHHHhhcCCCcchhhHHHhhccCCccccccccccccchhhhhccc--cc----CC-----CHHHHHHH
Q 046720 124 SHRNVSEVKRSLTHQLAAANIPIHQQISVLELQGGGIQNIGCLGKDLYNDETKSKNK--VK----GH-----DADMLLEH 192 (455)
Q Consensus 124 ~~r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~g~~~~~~~t~~di~n~~~~~r~~--~~----~~-----d~~~l~~~ 192 (455)
.-|.++.+.+..|..+.+.|.+.++|...+. ++...+++++.+++.. +. ++ -.+....+
T Consensus 13 ~GrpLs~dlR~rIv~~~~~G~s~r~iA~~~~----------VS~~tV~k~l~r~~~~G~~~~~~~~~~rpr~~t~~~~~~ 82 (123)
T d1pdnc_ 13 NGRPLPNNIRLKIVEMAADGIRPCVISRQLR----------VSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENR 82 (123)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCHHHHHHHHT----------CCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHH
T ss_pred CCcCCCHHHHHHHHHHHHhcCCHHHHHHHHC----------cCHHHHHHHHHHHHccCCcCcCCCCCCCCCCCCHHHHHH
Confidence 4567889999999999999999888776653 2333455555555532 11 11 12334556
Q ss_pred HHHhhhcCCCe
Q 046720 193 FQLEKEKNSAF 203 (455)
Q Consensus 193 l~~~~~~~p~~ 203 (455)
+..+..++|..
T Consensus 83 I~~~~~~~P~~ 93 (123)
T d1pdnc_ 83 IEEYKRSSPGM 93 (123)
T ss_dssp HHHTTTTCTTC
T ss_pred HHHHHHhCCCc
Confidence 66666677764
No 13
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=24.05 E-value=33 Score=21.54 Aligned_cols=56 Identities=11% Similarity=0.078 Sum_probs=39.2
Q ss_pred CCCHHHHHhHHHHhhcCCCcchhhHHHhhccCCccccccccccccchhhhhcccccCCCHHHHHHHH
Q 046720 127 NVSEVKRSLTHQLAAANIPIHQQISVLELQGGGIQNIGCLGKDLYNDETKSKNKVKGHDADMLLEHF 193 (455)
Q Consensus 127 ~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~g~~~~~~~t~~di~n~~~~~r~~~~~~d~~~l~~~l 193 (455)
.+|+.+.+.+. +...|.+..+|...+ .++.+.|.+++.+...++.-.+...++.+.
T Consensus 12 ~LT~rE~~vl~-~l~~G~s~~eIA~~l----------~iS~~TV~~~~~~i~~Klgv~~r~elv~~a 67 (70)
T d1yioa1 12 SLTGREQQVLQ-LTIRGLMNKQIAGEL----------GIAEVTVKVHRHNIMQKLNVRSLANLVHLV 67 (70)
T ss_dssp TSCHHHHHHHH-HHTTTCCHHHHHHHH----------TCCHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred cCCHHHHHHHH-HHHcCCCHHHHHHHH----------CCCHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 47777755544 455688888877665 355567888888888887777766666654
No 14
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}
Probab=23.00 E-value=1.3e+02 Score=26.56 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=41.8
Q ss_pred EEEEeeeeccccCCceeeeEEEEeeCCcceee---hhhhccCcchh---hHHHHHHHHHHHCCCCCCceEec--Cc--CH
Q 046720 235 VVVFDTTYNTNKYGMIFAPFIGVNNHGQTTVF---ACSFLSDETTE---SFVWLFEQFKKAMPGDLPKMIIT--DQ--DP 304 (455)
Q Consensus 235 v~~~D~t~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~e~~~---~~~~~l~~~~~~~~~~~p~~ii~--D~--~~ 304 (455)
+|.+|.||....-......++..+++|...-. .+..-..|..+ .....+..+.+..+...|..||. |+ ..
T Consensus 231 IIGiDVth~~~~~~~~~g~a~v~~~~g~~~~~s~v~~q~~~~E~idl~~~i~~aL~~~~~~n~~~~P~rIIIyRDG~v~~ 310 (447)
T d1u04a2 231 IIGIDVAPMKRSEGYIGGSAVMFDSQGYIRKIVPIKIGEQRGESVDMNEFFKEMVDKFKEFNIKLDNKKILLLRDGRITN 310 (447)
T ss_dssp EEEEEEEEECCTTTCEEEEEEEEETTSCEEEEEEEECCCCSSSSCCHHHHHHHHHHHHHHTTCCCTTCEEEEECSBCCCH
T ss_pred EEEEeccccCCCCeEEEEEEEEEeCCCceEEEEEEEccCCCCceecHHHHHHHHHHHHHHHhCCCCCceEEEEECCeecH
Confidence 67899999865544555555666666655332 11112223222 24455666666656566765444 55 22
Q ss_pred HHHHHHHhh
Q 046720 305 AITKAISET 313 (455)
Q Consensus 305 ~~~~ai~~v 313 (455)
.+.++++++
T Consensus 311 ~Ei~~ike~ 319 (447)
T d1u04a2 311 NEEEGLKYI 319 (447)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445555443
No 15
>d1qhka_ d.100.1.2 (A:) N-terminal domain of RNase HI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.49 E-value=20 Score=20.80 Aligned_cols=13 Identities=15% Similarity=0.434 Sum_probs=10.8
Q ss_pred CccCCHHHHHHHH
Q 046720 19 QEFVLLDDVHEFY 31 (455)
Q Consensus 19 ~~F~s~~e~~~~~ 31 (455)
..|+|.+||++|+
T Consensus 34 k~F~t~~eA~~~l 46 (47)
T d1qhka_ 34 KKFNSYEQAKSFL 46 (47)
T ss_dssp EEESCHHHHHHHH
T ss_pred CCcCCHHHHHHhh
Confidence 4689999998876
No 16
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=20.20 E-value=42 Score=20.70 Aligned_cols=58 Identities=12% Similarity=0.042 Sum_probs=40.5
Q ss_pred CCCHHHHHhHHHHhhcCCCcchhhHHHhhccCCccccccccccccchhhhhcccccCCCHHHHHHHHHH
Q 046720 127 NVSEVKRSLTHQLAAANIPIHQQISVLELQGGGIQNIGCLGKDLYNDETKSKNKVKGHDADMLLEHFQL 195 (455)
Q Consensus 127 ~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~g~~~~~~~t~~di~n~~~~~r~~~~~~d~~~l~~~l~~ 195 (455)
.+|+.+.+.+. +...|.+..+|...+ .++.+.|.+++.+...++.-.+...++.+..+
T Consensus 6 ~LT~rE~~vl~-ll~~G~s~~eIA~~l----------~iS~~TV~~~~~~i~~Klgv~~r~elv~~a~~ 63 (67)
T d1a04a1 6 QLTPRERDILK-LIAQGLPNKMIARRL----------DITESTVKVHVKHMLKKMKLKSRVEAAVWVHQ 63 (67)
T ss_dssp GSCHHHHHHHH-HHHTTCCHHHHHHHH----------TCCHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HHHhCCCHHHHHHHH----------CCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 47777755544 666799988887765 34556778888888888777776666665543
Done!