Query 046721
Match_columns 1068
No_of_seqs 415 out of 3227
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:50:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5192 BMS1 GTP-binding prote 100.0 6E-194 1E-198 1607.6 48.3 991 1-1064 1-1074(1077)
2 KOG1980 Uncharacterized conser 100.0 7E-109 1E-113 939.3 34.7 708 3-911 10-750 (754)
3 COG5177 Uncharacterized conser 100.0 5.9E-85 1.3E-89 724.1 25.3 708 6-905 12-760 (769)
4 PF04950 DUF663: Protein of un 100.0 1.8E-85 3.8E-90 726.8 7.8 258 628-903 15-297 (297)
5 cd01882 BMS1 Bms1. Bms1 is an 100.0 2.7E-32 5.8E-37 293.9 24.1 225 38-262 1-225 (225)
6 COG1159 Era GTPase [General fu 99.9 5E-27 1.1E-31 255.6 17.9 215 76-308 6-259 (298)
7 TIGR00436 era GTP-binding prot 99.9 2.5E-21 5.5E-26 214.1 19.8 211 78-308 2-251 (270)
8 smart00785 AARP2CN AARP2CN (NU 99.9 3.9E-22 8.5E-27 181.8 9.2 83 225-311 1-83 (83)
9 PRK15494 era GTPase Era; Provi 99.9 3.8E-21 8.2E-26 219.4 18.8 214 75-308 51-303 (339)
10 PF08142 AARP2CN: AARP2CN (NUC 99.9 7.4E-22 1.6E-26 181.0 9.0 85 225-311 1-85 (85)
11 PRK00089 era GTPase Era; Revie 99.9 1.1E-20 2.4E-25 210.9 20.0 213 76-308 5-256 (292)
12 KOG1423 Ras-like GTPase ERA [C 99.8 6.6E-20 1.4E-24 198.6 16.8 224 74-308 70-358 (379)
13 PRK10512 selenocysteinyl-tRNA- 99.8 5.7E-19 1.2E-23 215.0 26.7 218 77-312 1-229 (614)
14 CHL00071 tufA elongation facto 99.8 1.2E-18 2.5E-23 203.8 26.9 225 73-309 9-274 (409)
15 PTZ00327 eukaryotic translatio 99.8 7E-19 1.5E-23 207.2 24.6 229 73-310 31-316 (460)
16 PRK12735 elongation factor Tu; 99.8 1.7E-18 3.8E-23 201.6 25.1 227 72-310 8-267 (396)
17 PRK12736 elongation factor Tu; 99.8 2.4E-18 5.2E-23 200.3 25.6 223 73-309 9-264 (394)
18 PLN03126 Elongation factor Tu; 99.8 5.6E-18 1.2E-22 200.8 26.5 225 74-309 79-343 (478)
19 TIGR00475 selB selenocysteine- 99.8 4.9E-18 1.1E-22 206.1 26.2 219 77-312 1-231 (581)
20 TIGR00485 EF-Tu translation el 99.8 4.7E-18 1E-22 197.9 24.4 225 73-309 9-264 (394)
21 PLN03127 Elongation factor Tu; 99.8 6.4E-18 1.4E-22 199.2 25.6 225 73-309 58-317 (447)
22 PRK00049 elongation factor Tu; 99.8 1.5E-17 3.3E-22 193.7 26.0 225 73-309 9-266 (396)
23 TIGR03680 eif2g_arch translati 99.8 2.5E-17 5.4E-22 192.5 26.0 228 74-310 2-278 (406)
24 PRK04000 translation initiatio 99.8 5.2E-17 1.1E-21 190.0 25.9 229 73-310 6-283 (411)
25 PRK12317 elongation factor 1-a 99.8 5.8E-17 1.3E-21 190.5 25.4 221 74-310 4-278 (425)
26 PTZ00141 elongation factor 1- 99.8 1.1E-16 2.4E-21 188.8 25.6 224 74-310 5-286 (446)
27 COG5257 GCD11 Translation init 99.7 2.8E-17 6E-22 179.1 17.4 213 74-295 8-257 (415)
28 cd01884 EF_Tu EF-Tu subfamily. 99.7 8.8E-17 1.9E-21 170.0 18.5 144 76-219 2-169 (195)
29 PF00009 GTP_EFTU: Elongation 99.7 1.3E-16 2.8E-21 166.9 16.8 154 76-237 3-186 (188)
30 TIGR00483 EF-1_alpha translati 99.7 1.3E-15 2.8E-20 179.2 26.7 226 73-311 4-281 (426)
31 COG1160 Predicted GTPases [Gen 99.7 1.9E-16 4.2E-21 181.6 18.1 151 75-233 177-346 (444)
32 TIGR02034 CysN sulfate adenyly 99.7 1.2E-15 2.7E-20 178.3 24.5 220 78-310 2-270 (406)
33 PRK05124 cysN sulfate adenylyl 99.7 1.9E-15 4.1E-20 179.7 26.5 225 74-311 25-299 (474)
34 PRK05506 bifunctional sulfate 99.7 1.1E-15 2.4E-20 188.0 24.8 224 74-310 22-294 (632)
35 PLN00043 elongation factor 1-a 99.7 1.5E-15 3.2E-20 179.3 24.0 226 73-311 4-287 (447)
36 COG5256 TEF1 Translation elong 99.7 2.3E-15 4.9E-20 170.4 24.3 221 74-309 5-283 (428)
37 TIGR01394 TypA_BipA GTP-bindin 99.7 2.2E-15 4.7E-20 183.1 25.4 216 77-307 2-253 (594)
38 COG0050 TufB GTPases - transla 99.7 1.5E-15 3.3E-20 163.9 19.9 221 73-305 9-257 (394)
39 TIGR00491 aIF-2 translation in 99.7 6.5E-15 1.4E-19 178.4 26.1 223 76-315 4-287 (590)
40 cd01888 eIF2_gamma eIF2-gamma 99.7 2E-15 4.4E-20 160.2 18.5 158 77-240 1-201 (203)
41 PRK10218 GTP-binding protein; 99.6 2.2E-14 4.8E-19 174.3 26.0 206 76-296 5-242 (607)
42 cd04166 CysN_ATPS CysN_ATPS su 99.6 3.6E-15 7.8E-20 158.9 16.7 141 78-218 1-179 (208)
43 cd04171 SelB SelB subfamily. 99.6 6.2E-15 1.3E-19 148.2 17.3 150 78-233 2-161 (164)
44 COG3276 SelB Selenocysteine-sp 99.6 9E-15 1.9E-19 166.6 20.4 212 78-310 2-224 (447)
45 COG1160 Predicted GTPases [Gen 99.6 2.3E-15 5E-20 172.8 15.5 144 77-236 4-163 (444)
46 TIGR01393 lepA GTP-binding pro 99.6 2.4E-14 5.3E-19 174.3 23.7 209 76-307 3-239 (595)
47 cd01889 SelB_euk SelB subfamil 99.6 6.9E-15 1.5E-19 154.2 15.9 159 77-242 1-190 (192)
48 TIGR00487 IF-2 translation ini 99.6 5E-14 1.1E-18 170.9 24.9 211 75-305 86-307 (587)
49 COG1217 TypA Predicted membran 99.6 3.9E-14 8.4E-19 160.8 21.8 208 75-297 4-243 (603)
50 KOG0461 Selenocysteine-specifi 99.6 3.5E-14 7.7E-19 155.7 20.6 207 77-297 8-241 (522)
51 PRK04004 translation initiatio 99.6 6.9E-14 1.5E-18 170.0 25.4 220 76-315 6-289 (586)
52 PRK05433 GTP-binding protein L 99.6 4.9E-14 1.1E-18 171.8 23.9 209 76-307 7-243 (600)
53 PRK05306 infB translation init 99.6 6.6E-14 1.4E-18 173.7 24.6 198 74-293 288-498 (787)
54 PF02421 FeoB_N: Ferrous iron 99.6 2.7E-15 5.8E-20 153.0 10.1 140 77-231 1-154 (156)
55 CHL00189 infB translation init 99.6 6.4E-14 1.4E-18 172.5 23.7 213 74-305 242-467 (742)
56 KOG0460 Mitochondrial translat 99.6 2.9E-14 6.3E-19 156.6 16.6 216 72-299 50-295 (449)
57 KOG0458 Elongation factor 1 al 99.6 7.9E-14 1.7E-18 162.7 21.2 225 75-311 176-459 (603)
58 TIGR03594 GTPase_EngA ribosome 99.6 4.6E-14 9.9E-19 165.9 19.6 153 74-234 170-340 (429)
59 PRK00093 GTP-binding protein D 99.6 6E-14 1.3E-18 165.4 19.6 151 74-233 171-339 (435)
60 cd00881 GTP_translation_factor 99.6 1E-13 2.3E-18 142.5 18.4 153 78-237 1-186 (189)
61 cd01895 EngA2 EngA2 subfamily. 99.6 1.2E-13 2.6E-18 139.2 18.2 150 76-233 2-170 (174)
62 cd01891 TypA_BipA TypA (tyrosi 99.6 9.7E-14 2.1E-18 145.8 18.0 160 76-238 2-192 (194)
63 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 1.1E-13 2.3E-18 140.1 17.7 150 78-235 2-163 (168)
64 PRK12298 obgE GTPase CgtA; Rev 99.6 7.2E-14 1.6E-18 162.3 18.0 149 78-237 161-332 (390)
65 KOG0462 Elongation factor-type 99.6 6.6E-14 1.4E-18 161.7 17.1 215 76-314 60-302 (650)
66 cd01883 EF1_alpha Eukaryotic e 99.5 7.4E-14 1.6E-18 150.1 16.2 141 78-218 1-190 (219)
67 COG2262 HflX GTPases [General 99.5 6.4E-14 1.4E-18 158.9 16.2 148 74-238 190-356 (411)
68 COG0532 InfB Translation initi 99.5 3E-13 6.4E-18 157.8 21.2 215 75-313 4-236 (509)
69 cd01890 LepA LepA subfamily. 99.5 1.4E-13 2.9E-18 141.5 16.1 150 77-237 1-176 (179)
70 COG2895 CysN GTPases - Sulfate 99.5 1.6E-13 3.4E-18 151.9 16.4 220 75-309 5-275 (431)
71 TIGR03598 GTPase_YsxC ribosome 99.5 4.2E-13 9.1E-18 139.2 17.6 138 76-218 18-175 (179)
72 cd01886 EF-G Elongation factor 99.5 1.9E-13 4.1E-18 151.7 15.8 134 78-216 1-158 (270)
73 cd01885 EF2 EF2 (for archaea a 99.5 2.2E-13 4.8E-18 147.0 15.8 152 77-229 1-208 (222)
74 cd04165 GTPBP1_like GTPBP1-lik 99.5 5.3E-13 1.2E-17 144.3 18.4 149 79-234 2-219 (224)
75 KOG1145 Mitochondrial translat 99.5 6.3E-13 1.4E-17 153.5 19.6 144 72-218 149-301 (683)
76 PRK03003 GTP-binding protein D 99.5 4.5E-13 9.7E-18 159.8 18.8 152 75-235 210-379 (472)
77 cd04163 Era Era subfamily. Er 99.5 9.7E-13 2.1E-17 131.1 18.2 148 76-234 3-165 (168)
78 TIGR03156 GTP_HflX GTP-binding 99.5 6.8E-13 1.5E-17 152.4 19.1 140 77-234 190-348 (351)
79 COG0218 Predicted GTPase [Gene 99.5 1.4E-12 3E-17 136.5 18.0 151 75-234 23-193 (200)
80 cd01894 EngA1 EngA1 subfamily. 99.5 1.1E-12 2.4E-17 130.7 16.1 139 80-234 1-154 (157)
81 KOG0466 Translation initiation 99.5 8.6E-14 1.9E-18 150.6 8.7 213 74-295 36-296 (466)
82 KOG1951 GTP-binding protein AA 99.5 1.7E-13 3.6E-18 129.5 9.4 102 962-1063 1-104 (115)
83 PF10662 PduV-EutP: Ethanolami 99.5 5.3E-13 1.1E-17 133.8 13.5 133 77-233 2-141 (143)
84 cd01897 NOG NOG1 is a nucleola 99.5 1.7E-12 3.7E-17 131.8 16.9 145 77-235 1-165 (168)
85 PRK12296 obgE GTPase CgtA; Rev 99.5 8.4E-13 1.8E-17 156.4 16.5 147 77-236 160-338 (500)
86 PRK12299 obgE GTPase CgtA; Rev 99.4 2E-12 4.4E-17 147.5 18.5 147 78-236 160-326 (335)
87 cd01878 HflX HflX subfamily. 99.4 1.8E-12 3.9E-17 136.8 16.9 141 76-233 41-200 (204)
88 cd01898 Obg Obg subfamily. Th 99.4 1.9E-12 4E-17 131.6 16.4 145 78-234 2-167 (170)
89 PRK09518 bifunctional cytidyla 99.4 1.3E-12 2.9E-17 162.9 18.3 152 76-236 450-619 (712)
90 PRK03003 GTP-binding protein D 99.4 1.5E-12 3.2E-17 155.4 17.6 146 75-236 37-197 (472)
91 cd04167 Snu114p Snu114p subfam 99.4 1.7E-12 3.7E-17 138.7 16.1 148 77-225 1-195 (213)
92 cd04160 Arfrp1 Arfrp1 subfamil 99.4 8.7E-13 1.9E-17 133.8 13.0 150 78-234 1-165 (167)
93 TIGR03594 GTPase_EngA ribosome 99.4 1.5E-12 3.3E-17 153.0 16.6 142 78-235 1-157 (429)
94 COG1084 Predicted GTPase [Gene 99.4 2.5E-12 5.5E-17 142.3 17.0 120 74-195 166-304 (346)
95 PRK13351 elongation factor G; 99.4 8.6E-12 1.9E-16 155.3 24.0 121 76-199 8-152 (687)
96 COG0486 ThdF Predicted GTPase 99.4 1.2E-12 2.6E-17 151.0 14.8 141 76-234 217-372 (454)
97 KOG1144 Translation initiation 99.4 1.7E-12 3.7E-17 153.1 15.9 226 68-315 467-756 (1064)
98 PRK12739 elongation factor G; 99.4 9.4E-12 2E-16 154.8 23.5 122 76-200 8-153 (691)
99 PRK00454 engB GTP-binding prot 99.4 6.9E-12 1.5E-16 130.9 17.9 148 75-234 23-190 (196)
100 TIGR02729 Obg_CgtA Obg family 99.4 5.5E-12 1.2E-16 143.8 17.8 146 77-235 158-326 (329)
101 PRK07560 elongation factor EF- 99.4 1.1E-11 2.3E-16 155.2 21.5 221 76-307 20-340 (731)
102 cd04168 TetM_like Tet(M)-like 99.4 3.8E-12 8.3E-17 138.8 15.4 128 78-214 1-152 (237)
103 cd04169 RF3 RF3 subfamily. Pe 99.4 5.4E-12 1.2E-16 139.9 16.5 121 77-200 3-151 (267)
104 PRK11058 GTPase HflX; Provisio 99.4 7.8E-12 1.7E-16 147.0 18.6 145 77-237 198-361 (426)
105 PRK04213 GTP-binding protein; 99.4 1.1E-11 2.4E-16 130.5 17.7 148 76-236 9-190 (201)
106 COG0481 LepA Membrane GTPase L 99.4 8.8E-12 1.9E-16 142.3 17.8 209 76-308 9-246 (603)
107 PRK00093 GTP-binding protein D 99.4 5.7E-12 1.2E-16 148.6 17.1 143 77-235 2-159 (435)
108 PRK09866 hypothetical protein; 99.4 1.3E-11 2.9E-16 147.0 19.7 99 119-218 229-338 (741)
109 PRK00007 elongation factor G; 99.4 3.3E-12 7.2E-17 158.8 15.5 138 76-218 10-171 (693)
110 cd04151 Arl1 Arl1 subfamily. 99.4 5.2E-12 1.1E-16 127.6 14.2 147 79-234 2-156 (158)
111 PRK12297 obgE GTPase CgtA; Rev 99.4 7.5E-12 1.6E-16 146.6 17.3 143 78-236 160-325 (424)
112 PRK09518 bifunctional cytidyla 99.4 7E-12 1.5E-16 156.4 18.1 145 77-237 276-435 (712)
113 cd04157 Arl6 Arl6 subfamily. 99.4 4.4E-12 9.6E-17 127.6 13.1 148 78-234 1-160 (162)
114 TIGR02528 EutP ethanolamine ut 99.4 4.3E-12 9.3E-17 125.8 12.8 132 78-233 2-140 (142)
115 cd04145 M_R_Ras_like M-Ras/R-R 99.4 1.1E-11 2.4E-16 124.9 15.6 145 77-234 3-160 (164)
116 PRK15467 ethanolamine utilizat 99.4 7.7E-12 1.7E-16 127.8 14.4 139 78-239 3-148 (158)
117 cd01879 FeoB Ferrous iron tran 99.4 8.4E-12 1.8E-16 124.8 14.2 139 81-234 1-153 (158)
118 PRK05291 trmE tRNA modificatio 99.4 7.7E-12 1.7E-16 148.3 15.8 139 76-236 215-368 (449)
119 cd04164 trmE TrmE (MnmE, ThdF, 99.4 1.6E-11 3.4E-16 122.2 15.5 136 78-234 3-153 (157)
120 cd04154 Arl2 Arl2 subfamily. 99.3 1.3E-11 2.9E-16 126.7 14.7 149 76-233 14-170 (173)
121 cd04170 EF-G_bact Elongation f 99.3 1.2E-11 2.6E-16 137.0 15.2 128 78-214 1-152 (268)
122 PF01926 MMR_HSR1: 50S ribosom 99.3 6.6E-12 1.4E-16 121.0 11.3 100 78-179 1-116 (116)
123 smart00173 RAS Ras subfamily o 99.3 2.1E-11 4.4E-16 123.4 14.8 146 78-235 2-159 (164)
124 TIGR00484 EF-G translation elo 99.3 1.8E-11 3.9E-16 152.4 16.9 138 76-218 10-171 (689)
125 cd04136 Rap_like Rap-like subf 99.3 2.3E-11 4.9E-16 122.6 14.4 146 77-234 2-159 (163)
126 cd00878 Arf_Arl Arf (ADP-ribos 99.3 2E-11 4.3E-16 122.9 14.0 146 79-233 2-155 (158)
127 cd04138 H_N_K_Ras_like H-Ras/N 99.3 3.3E-11 7.2E-16 120.6 15.5 145 77-234 2-158 (162)
128 cd04149 Arf6 Arf6 subfamily. 99.3 2.9E-11 6.4E-16 124.4 15.4 150 76-234 9-166 (168)
129 cd04156 ARLTS1 ARLTS1 subfamil 99.3 2E-11 4.3E-16 123.0 13.6 146 79-233 2-157 (160)
130 cd01876 YihA_EngB The YihA (En 99.3 6.5E-11 1.4E-15 118.4 17.1 146 79-234 2-167 (170)
131 PRK12740 elongation factor G; 99.3 1.2E-10 2.5E-15 144.8 22.9 114 82-198 1-138 (668)
132 smart00178 SAR Sar1p-like memb 99.3 3E-11 6.4E-16 126.2 14.5 149 76-234 17-181 (184)
133 cd01861 Rab6 Rab6 subfamily. 99.3 4.3E-11 9.2E-16 120.5 15.1 145 78-234 2-158 (161)
134 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 2.9E-11 6.3E-16 124.7 14.1 150 76-234 15-172 (174)
135 cd01881 Obg_like The Obg-like 99.3 3.2E-11 7E-16 122.8 14.1 142 81-234 1-173 (176)
136 cd04124 RabL2 RabL2 subfamily. 99.3 6.5E-11 1.4E-15 120.4 16.2 143 78-235 2-155 (161)
137 cd04175 Rap1 Rap1 subgroup. T 99.3 3.4E-11 7.4E-16 122.1 14.1 147 77-235 2-160 (164)
138 PRK09554 feoB ferrous iron tra 99.3 3E-11 6.4E-16 151.0 16.4 144 77-235 4-165 (772)
139 cd00880 Era_like Era (E. coli 99.3 9.4E-11 2E-15 115.0 16.7 144 81-233 1-159 (163)
140 cd04161 Arl2l1_Arl13_like Arl2 99.3 3.4E-11 7.5E-16 123.5 14.1 155 78-234 1-165 (167)
141 smart00175 RAB Rab subfamily o 99.3 5.5E-11 1.2E-15 119.7 15.1 146 78-236 2-160 (164)
142 cd04139 RalA_RalB RalA/RalB su 99.3 4.9E-11 1.1E-15 119.9 14.7 145 78-235 2-159 (164)
143 cd04159 Arl10_like Arl10-like 99.3 5.3E-11 1.1E-15 118.0 14.6 146 79-233 2-156 (159)
144 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 5.4E-11 1.2E-15 124.0 15.2 152 76-237 3-169 (183)
145 cd04158 ARD1 ARD1 subfamily. 99.3 3.5E-11 7.6E-16 123.5 13.5 148 79-236 2-159 (169)
146 cd00154 Rab Rab family. Rab G 99.3 7.5E-11 1.6E-15 116.7 15.2 143 78-233 2-157 (159)
147 cd01864 Rab19 Rab19 subfamily. 99.3 8.5E-11 1.8E-15 119.5 15.6 136 77-218 4-151 (165)
148 PRK14845 translation initiatio 99.3 1.6E-10 3.6E-15 146.7 21.4 208 88-315 473-744 (1049)
149 cd04155 Arl3 Arl3 subfamily. 99.3 3.3E-11 7.1E-16 123.1 12.5 150 75-234 13-171 (173)
150 cd00879 Sar1 Sar1 subfamily. 99.3 4.8E-11 1E-15 124.2 13.9 153 76-235 19-188 (190)
151 cd04119 RJL RJL (RabJ-Like) su 99.3 6.5E-11 1.4E-15 119.3 14.4 145 78-235 2-164 (168)
152 cd01865 Rab3 Rab3 subfamily. 99.3 8.8E-11 1.9E-15 119.6 15.5 147 77-235 2-160 (165)
153 cd04106 Rab23_lke Rab23-like s 99.3 8.9E-11 1.9E-15 118.3 15.3 145 78-234 2-159 (162)
154 TIGR00450 mnmE_trmE_thdF tRNA 99.3 6.9E-11 1.5E-15 139.7 16.6 129 75-217 202-345 (442)
155 cd04150 Arf1_5_like Arf1-Arf5- 99.3 7.7E-11 1.7E-15 120.0 14.5 146 78-233 2-156 (159)
156 smart00177 ARF ARF-like small 99.3 8.7E-11 1.9E-15 121.6 15.1 151 76-236 13-172 (175)
157 cd04112 Rab26 Rab26 subfamily. 99.3 8E-11 1.7E-15 123.4 14.9 149 78-238 2-163 (191)
158 cd04114 Rab30 Rab30 subfamily. 99.3 9.9E-11 2.1E-15 119.0 15.1 148 76-235 7-166 (169)
159 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.2 1.2E-10 2.6E-15 118.3 15.5 146 77-235 3-161 (166)
160 PLN00116 translation elongatio 99.2 4E-11 8.6E-16 152.0 14.6 144 76-220 19-219 (843)
161 cd01893 Miro1 Miro1 subfamily. 99.2 1.6E-10 3.5E-15 117.9 16.4 146 78-233 2-159 (166)
162 cd01866 Rab2 Rab2 subfamily. 99.2 1.3E-10 2.8E-15 118.9 15.5 146 77-235 5-163 (168)
163 cd01862 Rab7 Rab7 subfamily. 99.2 1E-10 2.2E-15 118.9 14.5 147 78-236 2-165 (172)
164 PTZ00369 Ras-like protein; Pro 99.2 1.1E-10 2.3E-15 122.3 14.9 149 76-237 5-166 (189)
165 PTZ00416 elongation factor 2; 99.2 5.4E-11 1.2E-15 150.6 15.1 146 76-222 19-215 (836)
166 cd04140 ARHI_like ARHI subfami 99.2 1.6E-10 3.6E-15 117.6 15.8 146 77-234 2-161 (165)
167 cd01860 Rab5_related Rab5-rela 99.2 1.9E-10 4.1E-15 116.0 15.8 146 77-235 2-160 (163)
168 cd04101 RabL4 RabL4 (Rab-like4 99.2 1.6E-10 3.5E-15 116.8 15.1 146 78-235 2-161 (164)
169 cd01867 Rab8_Rab10_Rab13_like 99.2 1.8E-10 3.9E-15 117.6 15.5 147 76-235 3-162 (167)
170 KOG1489 Predicted GTP-binding 99.2 9.9E-11 2.2E-15 128.8 14.3 143 78-233 198-362 (366)
171 TIGR00490 aEF-2 translation el 99.2 1.7E-10 3.8E-15 144.1 18.3 108 76-184 19-152 (720)
172 cd01863 Rab18 Rab18 subfamily. 99.2 1.6E-10 3.4E-15 116.6 14.4 143 78-233 2-157 (161)
173 cd04137 RheB Rheb (Ras Homolog 99.2 1.5E-10 3.2E-15 119.4 14.5 148 77-236 2-161 (180)
174 PRK00741 prfC peptide chain re 99.2 1.1E-10 2.4E-15 140.7 15.5 122 76-200 10-159 (526)
175 cd01868 Rab11_like Rab11-like. 99.2 2.9E-10 6.2E-15 115.3 16.0 146 77-234 4-161 (165)
176 cd04176 Rap2 Rap2 subgroup. T 99.2 2.6E-10 5.5E-15 115.4 15.3 146 77-234 2-159 (163)
177 COG5258 GTPBP1 GTPase [General 99.2 2.7E-10 5.8E-15 127.4 16.5 215 74-307 115-402 (527)
178 TIGR00503 prfC peptide chain r 99.2 1.3E-10 2.7E-15 140.1 15.2 122 76-200 11-160 (527)
179 cd04142 RRP22 RRP22 subfamily. 99.2 2E-10 4.4E-15 121.8 15.0 147 78-235 2-171 (198)
180 cd04127 Rab27A Rab27a subfamil 99.2 2.6E-10 5.6E-15 117.4 15.3 147 77-235 5-174 (180)
181 cd04144 Ras2 Ras2 subfamily. 99.2 2.6E-10 5.6E-15 119.5 15.5 145 79-235 2-160 (190)
182 cd04113 Rab4 Rab4 subfamily. 99.2 2.5E-10 5.4E-15 115.3 14.8 144 78-234 2-158 (161)
183 cd04177 RSR1 RSR1 subgroup. R 99.2 2.6E-10 5.5E-15 116.6 14.9 147 77-234 2-160 (168)
184 TIGR00231 small_GTP small GTP- 99.2 1.2E-10 2.6E-15 114.2 11.9 134 76-218 1-149 (161)
185 cd04104 p47_IIGP_like p47 (47- 99.2 4.1E-10 8.9E-15 119.2 16.7 139 76-217 1-166 (197)
186 cd04123 Rab21 Rab21 subfamily. 99.2 2.7E-10 5.9E-15 114.0 14.4 144 78-234 2-158 (162)
187 cd04146 RERG_RasL11_like RERG/ 99.2 2.1E-10 4.6E-15 116.6 13.7 146 79-235 2-161 (165)
188 cd04122 Rab14 Rab14 subfamily. 99.2 3.8E-10 8.3E-15 114.9 15.6 146 77-235 3-161 (166)
189 cd00876 Ras Ras family. The R 99.2 2.8E-10 6E-15 113.8 14.3 144 78-234 1-157 (160)
190 cd04107 Rab32_Rab38 Rab38/Rab3 99.2 4.6E-10 9.9E-15 118.7 16.0 148 78-237 2-167 (201)
191 KOG1191 Mitochondrial GTPase [ 99.2 9.4E-11 2E-15 135.2 11.3 169 76-252 268-464 (531)
192 cd00157 Rho Rho (Ras homology) 99.2 2.8E-10 6E-15 115.6 13.4 148 78-233 2-168 (171)
193 cd04109 Rab28 Rab28 subfamily. 99.2 4.5E-10 9.8E-15 120.2 15.4 148 78-236 2-164 (215)
194 PLN03118 Rab family protein; P 99.2 6.9E-10 1.5E-14 118.3 16.7 150 75-237 13-176 (211)
195 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.2 5.2E-10 1.1E-14 115.6 15.1 146 77-235 3-161 (172)
196 PTZ00133 ADP-ribosylation fact 99.2 4.6E-10 1E-14 117.2 14.7 149 76-236 17-176 (182)
197 COG0370 FeoB Fe2+ transport sy 99.2 1.6E-10 3.5E-15 138.6 12.6 149 77-240 4-166 (653)
198 cd04116 Rab9 Rab9 subfamily. 99.2 8.2E-10 1.8E-14 112.6 16.0 147 75-233 4-166 (170)
199 PLN00223 ADP-ribosylation fact 99.2 4.4E-10 9.4E-15 117.3 14.2 149 77-236 18-176 (181)
200 cd04110 Rab35 Rab35 subfamily. 99.1 7.5E-10 1.6E-14 117.1 16.0 149 76-237 6-166 (199)
201 cd04147 Ras_dva Ras-dva subfam 99.1 6E-10 1.3E-14 117.6 15.2 147 79-237 2-162 (198)
202 cd01852 AIG1 AIG1 (avrRpt2-ind 99.1 7.3E-10 1.6E-14 117.0 15.3 157 77-238 1-184 (196)
203 cd04118 Rab24 Rab24 subfamily. 99.1 5.4E-10 1.2E-14 116.8 14.2 151 78-237 2-165 (193)
204 cd04111 Rab39 Rab39 subfamily. 99.1 5.6E-10 1.2E-14 119.5 14.4 148 77-235 3-163 (211)
205 smart00174 RHO Rho (Ras homolo 99.1 6E-10 1.3E-14 113.9 14.0 148 79-234 1-168 (174)
206 cd04115 Rab33B_Rab33A Rab33B/R 99.1 9E-10 1.9E-14 112.9 15.2 135 77-218 3-151 (170)
207 cd01892 Miro2 Miro2 subfamily. 99.1 7.9E-10 1.7E-14 113.8 14.7 150 76-236 4-164 (169)
208 cd00882 Ras_like_GTPase Ras-li 99.1 6.6E-10 1.4E-14 107.3 12.9 132 81-218 1-145 (157)
209 cd04125 RabA_like RabA-like su 99.1 1.4E-09 3E-14 113.4 15.4 149 78-238 2-162 (188)
210 COG1163 DRG Predicted GTPase [ 99.1 8.6E-10 1.9E-14 122.0 14.2 76 77-152 64-152 (365)
211 cd04132 Rho4_like Rho4-like su 99.1 1.7E-09 3.6E-14 112.4 15.6 147 78-235 2-164 (187)
212 COG0480 FusA Translation elong 99.1 3.8E-10 8.3E-15 138.7 12.6 123 75-200 9-156 (697)
213 cd04162 Arl9_Arfrp2_like Arl9/ 99.1 1.2E-09 2.5E-14 112.0 14.2 135 79-217 2-144 (164)
214 cd00877 Ran Ran (Ras-related n 99.1 1.4E-09 3E-14 111.5 14.6 146 78-237 2-158 (166)
215 cd04148 RGK RGK subfamily. Th 99.1 1.4E-09 3.1E-14 117.3 15.3 148 78-237 2-162 (221)
216 PLN03110 Rab GTPase; Provision 99.1 1.6E-09 3.6E-14 116.2 15.7 150 76-237 12-173 (216)
217 cd04126 Rab20 Rab20 subfamily. 99.1 1.6E-09 3.4E-14 117.1 15.6 106 78-184 2-114 (220)
218 COG0536 Obg Predicted GTPase [ 99.1 1.3E-09 2.8E-14 121.6 15.1 146 79-235 162-330 (369)
219 cd04143 Rhes_like Rhes_like su 99.1 2.2E-09 4.7E-14 118.0 16.6 151 78-240 2-173 (247)
220 KOG0410 Predicted GTP binding 99.1 5.8E-10 1.3E-14 122.8 11.9 148 75-243 177-346 (410)
221 cd04108 Rab36_Rab34 Rab34/Rab3 99.1 2.5E-09 5.5E-14 110.2 16.0 148 78-236 2-163 (170)
222 cd01896 DRG The developmentall 99.1 1.9E-09 4.2E-14 117.3 15.9 75 78-152 2-89 (233)
223 cd04120 Rab12 Rab12 subfamily. 99.1 1.8E-09 4E-14 115.1 15.2 149 78-237 2-162 (202)
224 cd04135 Tc10 TC10 subfamily. 99.0 2.5E-09 5.5E-14 109.3 14.3 106 78-184 2-118 (174)
225 cd01871 Rac1_like Rac1-like su 99.0 3.5E-09 7.5E-14 109.7 15.4 147 77-234 2-171 (174)
226 cd04105 SR_beta Signal recogni 99.0 1.5E-09 3.2E-14 115.7 12.9 106 78-184 2-123 (203)
227 cd01874 Cdc42 Cdc42 subfamily. 99.0 3.8E-09 8.2E-14 109.6 15.4 107 77-184 2-119 (175)
228 PF00025 Arf: ADP-ribosylation 99.0 1.1E-09 2.5E-14 113.7 11.2 152 74-235 12-173 (175)
229 cd01870 RhoA_like RhoA-like su 99.0 2.8E-09 6E-14 109.1 13.7 150 77-234 2-171 (175)
230 TIGR00437 feoB ferrous iron tr 99.0 1.5E-09 3.3E-14 132.7 13.5 138 83-235 1-152 (591)
231 cd04117 Rab15 Rab15 subfamily. 99.0 4.9E-09 1.1E-13 106.7 15.1 145 78-234 2-158 (161)
232 PLN03071 GTP-binding nuclear p 99.0 4E-09 8.6E-14 113.6 14.9 150 74-237 11-171 (219)
233 cd04128 Spg1 Spg1p. Spg1p (se 99.0 8.9E-09 1.9E-13 107.7 16.9 149 78-236 2-164 (182)
234 cd04130 Wrch_1 Wrch-1 subfamil 99.0 4.6E-09 1E-13 108.0 14.1 106 78-184 2-118 (173)
235 PLN03108 Rab family protein; P 99.0 5.9E-09 1.3E-13 111.4 15.3 149 76-237 6-167 (210)
236 cd04134 Rho3 Rho3 subfamily. 99.0 5.7E-09 1.2E-13 109.4 14.2 152 77-237 1-173 (189)
237 cd04121 Rab40 Rab40 subfamily. 99.0 1.4E-08 3E-13 107.2 16.2 146 76-234 6-163 (189)
238 COG4108 PrfC Peptide chain rel 98.9 6.6E-09 1.4E-13 118.5 12.3 107 77-184 13-147 (528)
239 COG3596 Predicted GTPase [Gene 98.9 9.9E-09 2.1E-13 111.9 12.9 161 74-239 37-223 (296)
240 PF00350 Dynamin_N: Dynamin fa 98.9 5.1E-09 1.1E-13 106.9 10.1 62 119-180 100-168 (168)
241 cd01875 RhoG RhoG subfamily. 98.9 3.6E-08 7.8E-13 103.7 16.8 154 77-238 4-177 (191)
242 COG4917 EutP Ethanolamine util 98.9 6.7E-09 1.4E-13 100.7 10.1 135 77-235 2-143 (148)
243 TIGR02836 spore_IV_A stage IV 98.9 2.1E-08 4.6E-13 115.0 15.6 146 76-233 17-232 (492)
244 cd01850 CDC_Septin CDC/Septin. 98.9 3.9E-08 8.4E-13 109.9 16.4 135 74-214 2-183 (276)
245 cd01899 Ygr210 Ygr210 subfamil 98.9 4.7E-08 1E-12 111.1 17.1 74 79-152 1-111 (318)
246 KOG0467 Translation elongation 98.9 1.6E-08 3.5E-13 121.2 13.4 154 76-230 9-214 (887)
247 PF08477 Miro: Miro-like prote 98.9 1.1E-08 2.4E-13 98.3 9.8 103 78-181 1-119 (119)
248 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.8 5.2E-08 1.1E-12 106.2 15.3 108 76-184 13-131 (232)
249 cd04133 Rop_like Rop subfamily 98.8 5.4E-08 1.2E-12 101.6 14.5 107 77-184 2-119 (176)
250 PRK09602 translation-associate 98.8 6.2E-08 1.3E-12 113.3 16.3 76 76-151 1-113 (396)
251 cd01853 Toc34_like Toc34-like 98.8 1.2E-07 2.5E-12 104.5 17.5 112 73-184 28-163 (249)
252 PF09439 SRPRB: Signal recogni 98.8 1.6E-08 3.4E-13 105.9 10.0 107 77-184 4-126 (181)
253 cd04131 Rnd Rnd subfamily. Th 98.8 4.1E-08 8.9E-13 102.4 13.1 107 77-184 2-119 (178)
254 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.8 5E-08 1.1E-12 102.3 13.3 108 76-184 5-123 (182)
255 PRK09435 membrane ATPase/prote 98.8 9.3E-08 2E-12 109.1 16.0 150 73-235 53-257 (332)
256 cd04129 Rho2 Rho2 subfamily. 98.8 6.7E-08 1.4E-12 101.1 13.6 148 77-235 2-170 (187)
257 PTZ00258 GTP-binding protein; 98.8 8.9E-08 1.9E-12 111.2 15.8 76 76-151 21-126 (390)
258 cd04103 Centaurin_gamma Centau 98.8 1.2E-07 2.6E-12 97.0 14.6 142 78-233 2-154 (158)
259 smart00053 DYNc Dynamin, GTPas 98.8 8.8E-08 1.9E-12 104.8 14.2 67 120-187 125-209 (240)
260 smart00176 RAN Ran (Ras-relate 98.8 1.1E-07 2.3E-12 101.5 14.2 142 82-237 1-153 (200)
261 KOG0459 Polypeptide release fa 98.8 3E-08 6.6E-13 112.0 10.4 218 74-306 77-354 (501)
262 KOG1490 GTP-binding protein CR 98.8 3.6E-08 7.8E-13 114.0 11.2 141 73-217 165-325 (620)
263 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.7 1.2E-07 2.5E-12 102.8 14.3 107 77-184 2-119 (222)
264 PF05049 IIGP: Interferon-indu 98.7 6.3E-08 1.4E-12 111.5 12.6 142 74-218 33-201 (376)
265 PRK09601 GTP-binding protein Y 98.7 1.6E-07 3.4E-12 108.1 15.5 75 77-151 3-107 (364)
266 PRK13768 GTPase; Provisional 98.7 2.1E-07 4.5E-12 102.7 14.8 110 120-236 97-245 (253)
267 KOG0073 GTP-binding ADP-ribosy 98.7 3.8E-07 8.3E-12 92.4 14.8 137 77-218 17-163 (185)
268 KOG0468 U5 snRNP-specific prot 98.7 4.9E-08 1.1E-12 115.2 9.7 106 77-183 129-262 (971)
269 COG2229 Predicted GTPase [Gene 98.7 5.1E-07 1.1E-11 93.4 15.7 134 76-218 10-163 (187)
270 cd01873 RhoBTB RhoBTB subfamil 98.7 2.5E-07 5.5E-12 98.1 13.5 106 77-183 3-133 (195)
271 PF00071 Ras: Ras family; Int 98.6 3.8E-07 8.2E-12 92.0 13.4 144 78-233 1-156 (162)
272 PTZ00132 GTP-binding nuclear p 98.6 6.9E-07 1.5E-11 95.5 16.0 136 74-218 7-153 (215)
273 cd04102 RabL3 RabL3 (Rab-like3 98.6 8.5E-07 1.8E-11 94.8 16.4 106 78-184 2-143 (202)
274 TIGR00991 3a0901s02IAP34 GTP-b 98.6 4.2E-07 9.1E-12 102.3 13.1 110 75-184 37-167 (313)
275 PF04548 AIG1: AIG1 family; I 98.5 1.2E-06 2.7E-11 94.1 14.8 108 77-185 1-131 (212)
276 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.5 2.1E-06 4.6E-11 89.4 15.5 152 77-240 23-187 (221)
277 KOG1143 Predicted translation 98.5 6.6E-07 1.4E-11 100.2 11.8 201 77-296 168-440 (591)
278 KOG0463 GTP-binding protein GP 98.5 1.7E-06 3.7E-11 96.8 14.8 207 75-300 132-411 (641)
279 cd01900 YchF YchF subfamily. 98.5 2.3E-07 4.9E-12 103.4 7.9 73 79-151 1-103 (274)
280 KOG0076 GTP-binding ADP-ribosy 98.5 6.4E-07 1.4E-11 91.6 9.3 139 77-218 18-172 (197)
281 KOG0078 GTP-binding protein SE 98.5 2.8E-06 6.1E-11 89.7 14.3 135 77-218 13-159 (207)
282 COG1100 GTPase SAR1 and relate 98.4 1.7E-06 3.7E-11 92.0 12.7 109 77-186 6-127 (219)
283 TIGR00073 hypB hydrogenase acc 98.4 1.2E-06 2.7E-11 93.5 11.4 145 75-234 21-203 (207)
284 KOG0084 GTPase Rab1/YPT1, smal 98.4 2.5E-06 5.4E-11 89.1 13.1 132 77-218 10-157 (205)
285 TIGR00993 3a0901s04IAP86 chlor 98.4 1.9E-06 4E-11 104.2 13.4 109 75-184 117-250 (763)
286 PLN00023 GTP-binding protein; 98.4 2.1E-06 4.6E-11 97.3 12.6 107 77-184 22-165 (334)
287 PF03308 ArgK: ArgK protein; 98.4 1.5E-06 3.3E-11 95.0 10.1 148 74-234 27-226 (266)
288 TIGR00750 lao LAO/AO transport 98.4 6.1E-06 1.3E-10 93.4 15.2 152 73-235 31-235 (300)
289 KOG0075 GTP-binding ADP-ribosy 98.3 2E-06 4.3E-11 85.7 8.6 107 77-184 21-136 (186)
290 KOG0469 Elongation factor 2 [T 98.3 1.6E-06 3.4E-11 100.0 8.7 107 76-183 19-163 (842)
291 COG0012 Predicted GTPase, prob 98.3 1E-05 2.3E-10 92.3 14.8 75 77-151 3-108 (372)
292 PF00735 Septin: Septin; Inte 98.3 8.6E-06 1.9E-10 91.4 13.9 123 76-201 4-172 (281)
293 KOG0070 GTP-binding ADP-ribosy 98.3 3.5E-06 7.5E-11 87.4 9.2 107 77-184 18-132 (181)
294 KOG0092 GTPase Rab5/YPT51 and 98.2 9.7E-06 2.1E-10 84.5 12.2 151 76-238 5-167 (200)
295 COG1703 ArgK Putative periplas 98.2 6E-06 1.3E-10 91.5 10.2 151 71-233 46-249 (323)
296 PF03029 ATP_bind_1: Conserved 98.2 1.2E-05 2.5E-10 88.3 12.3 107 121-234 92-233 (238)
297 PF04670 Gtr1_RagA: Gtr1/RagA 98.2 2.1E-05 4.5E-10 85.9 13.6 137 78-215 1-159 (232)
298 KOG0464 Elongation factor G [T 98.2 2E-06 4.3E-11 97.2 5.5 121 77-200 38-182 (753)
299 KOG2486 Predicted GTPase [Gene 98.1 5.7E-06 1.2E-10 90.5 8.3 106 76-184 136-262 (320)
300 KOG0090 Signal recognition par 98.1 4.9E-06 1.1E-10 88.0 7.5 109 76-184 38-159 (238)
301 COG5019 CDC3 Septin family pro 98.1 6.7E-05 1.5E-09 85.4 16.3 133 73-211 20-199 (373)
302 PF00448 SRP54: SRP54-type pro 98.1 3.4E-05 7.3E-10 82.2 13.2 125 76-214 1-174 (196)
303 KOG1954 Endocytosis/signaling 98.1 6.1E-05 1.3E-09 85.0 15.3 134 77-216 59-257 (532)
304 KOG0394 Ras-related GTPase [Ge 98.1 1.4E-05 3E-10 82.8 9.3 138 74-218 7-163 (210)
305 KOG0465 Mitochondrial elongati 98.1 4.8E-06 1E-10 98.6 6.2 108 76-184 39-170 (721)
306 KOG1486 GTP-binding protein DR 98.1 5.5E-06 1.2E-10 89.1 6.0 92 77-170 63-168 (364)
307 PRK10463 hydrogenase nickel in 98.0 3.3E-06 7.2E-11 94.5 4.4 53 173-235 233-286 (290)
308 cd01858 NGP_1 NGP-1. Autoanti 98.0 8.4E-06 1.8E-10 83.1 6.8 53 75-129 101-156 (157)
309 KOG0395 Ras-related GTPase [Ge 98.0 3E-05 6.5E-10 82.7 10.9 136 76-218 3-150 (196)
310 KOG0098 GTPase Rab2, small G p 98.0 5.7E-05 1.2E-09 78.5 12.2 156 76-243 6-173 (216)
311 KOG1532 GTPase XAB1, interacts 98.0 7.3E-05 1.6E-09 81.7 13.5 144 74-218 17-249 (366)
312 cd04178 Nucleostemin_like Nucl 98.0 1.2E-05 2.6E-10 83.9 6.7 54 74-129 115-171 (172)
313 KOG0448 Mitofusin 1 GTPase, in 98.0 5.8E-05 1.3E-09 90.9 13.2 96 120-216 206-309 (749)
314 cd01851 GBP Guanylate-binding 98.0 8.3E-05 1.8E-09 80.8 13.2 78 73-151 4-102 (224)
315 TIGR00101 ureG urease accessor 98.0 4.3E-05 9.4E-10 81.6 10.8 143 76-234 1-192 (199)
316 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 4.5E-05 9.9E-10 76.5 10.0 78 132-218 3-82 (141)
317 KOG0095 GTPase Rab30, small G 97.9 8.6E-05 1.9E-09 74.2 11.2 107 77-184 8-126 (213)
318 PRK10416 signal recognition pa 97.9 0.00012 2.7E-09 83.5 14.3 128 74-214 112-293 (318)
319 KOG0080 GTPase Rab18, small G 97.9 5.9E-05 1.3E-09 76.4 10.0 134 76-217 11-158 (209)
320 TIGR01425 SRP54_euk signal rec 97.9 0.00014 2.9E-09 85.9 13.4 108 73-184 97-253 (429)
321 KOG0087 GTPase Rab11/YPT3, sma 97.8 0.00012 2.5E-09 77.7 10.9 135 77-218 15-161 (222)
322 KOG0077 Vesicle coat complex C 97.8 5.2E-05 1.1E-09 77.4 7.8 109 74-184 18-135 (193)
323 KOG0093 GTPase Rab3, small G p 97.8 0.00023 4.9E-09 71.4 11.9 135 77-218 22-168 (193)
324 PTZ00099 rab6; Provisional 97.8 0.0001 2.2E-09 77.1 10.0 108 117-237 26-141 (176)
325 TIGR00064 ftsY signal recognit 97.8 0.00026 5.5E-09 79.3 13.8 129 73-214 69-251 (272)
326 TIGR00092 GTP-binding protein 97.8 6E-05 1.3E-09 87.2 8.5 75 77-151 3-108 (368)
327 cd01858 NGP_1 NGP-1. Autoanti 97.8 0.00011 2.3E-09 75.0 9.5 87 134-233 2-90 (157)
328 cd01849 YlqF_related_GTPase Yl 97.8 4.3E-05 9.3E-10 77.8 6.6 53 75-129 99-154 (155)
329 KOG2655 Septin family protein 97.7 0.0003 6.6E-09 80.7 13.5 136 73-214 18-198 (366)
330 cd01855 YqeH YqeH. YqeH is an 97.7 4E-05 8.7E-10 80.6 5.8 52 76-129 127-189 (190)
331 COG1161 Predicted GTPases [Gen 97.7 5.2E-05 1.1E-09 86.8 6.5 53 75-129 131-186 (322)
332 PRK09563 rbgA GTPase YlqF; Rev 97.7 8E-05 1.7E-09 83.9 7.3 54 74-129 119-175 (287)
333 PRK14722 flhF flagellar biosyn 97.7 0.00033 7.1E-09 81.5 12.5 128 76-214 137-315 (374)
334 PRK14974 cell division protein 97.6 0.00012 2.7E-09 84.0 8.5 127 74-214 138-313 (336)
335 TIGR03596 GTPase_YlqF ribosome 97.6 8.7E-05 1.9E-09 83.1 7.1 55 74-130 116-173 (276)
336 KOG1424 Predicted GTP-binding 97.6 4.7E-05 1E-09 89.3 4.9 53 76-130 314-369 (562)
337 cd01859 MJ1464 MJ1464. This f 97.6 0.00035 7.6E-09 70.9 10.8 90 134-237 5-95 (156)
338 PRK11889 flhF flagellar biosyn 97.6 0.00067 1.5E-08 79.0 13.7 127 75-214 240-411 (436)
339 KOG0074 GTP-binding ADP-ribosy 97.6 0.00018 3.8E-09 71.7 7.4 108 76-184 17-133 (185)
340 cd01857 HSR1_MMR1 HSR1/MMR1. 97.6 0.00014 3E-09 73.0 6.5 51 78-130 85-138 (141)
341 cd01849 YlqF_related_GTPase Yl 97.6 0.00039 8.4E-09 70.8 9.9 81 142-235 1-82 (155)
342 KOG1547 Septin CDC10 and relat 97.5 0.0016 3.4E-08 70.3 14.4 135 74-214 44-224 (336)
343 COG0378 HypB Ni2+-binding GTPa 97.5 0.00036 7.8E-09 73.6 9.1 139 77-235 14-198 (202)
344 TIGR03597 GTPase_YqeH ribosome 97.5 6.1E-05 1.3E-09 87.5 3.8 105 77-184 155-280 (360)
345 cd01856 YlqF YlqF. Proteins o 97.5 0.00048 1E-08 71.4 9.7 89 132-236 11-99 (171)
346 KOG0072 GTP-binding ADP-ribosy 97.5 0.00031 6.7E-09 70.3 7.6 143 77-233 19-174 (182)
347 KOG1707 Predicted Ras related/ 97.5 0.00053 1.2E-08 81.8 10.7 110 74-184 7-129 (625)
348 PRK12723 flagellar biosynthesi 97.4 0.0011 2.4E-08 77.6 12.8 109 74-185 172-327 (388)
349 PRK00771 signal recognition pa 97.4 0.0014 3E-08 78.0 13.7 128 74-214 93-266 (437)
350 KOG0071 GTP-binding ADP-ribosy 97.4 0.00066 1.4E-08 67.7 9.1 107 77-184 18-132 (180)
351 cd02036 MinD Bacterial cell di 97.4 0.0018 3.9E-08 66.6 12.7 105 79-183 2-127 (179)
352 PRK12724 flagellar biosynthesi 97.4 0.0013 2.7E-08 77.5 12.7 127 75-214 222-393 (432)
353 KOG0079 GTP-binding protein H- 97.4 0.0016 3.5E-08 65.5 11.4 132 79-218 11-154 (198)
354 TIGR03596 GTPase_YlqF ribosome 97.4 0.00079 1.7E-08 75.4 10.5 93 128-236 5-101 (276)
355 cd01856 YlqF YlqF. Proteins o 97.4 0.00038 8.2E-09 72.2 7.0 54 75-130 114-170 (171)
356 cd03111 CpaE_like This protein 97.3 0.0015 3.3E-08 62.6 10.4 98 78-179 1-106 (106)
357 PRK12726 flagellar biosynthesi 97.3 0.0034 7.3E-08 73.0 14.9 128 74-214 204-376 (407)
358 PRK14721 flhF flagellar biosyn 97.3 0.0013 2.7E-08 77.8 11.6 127 75-214 190-360 (420)
359 KOG3883 Ras family small GTPas 97.3 0.0074 1.6E-07 61.2 15.1 134 74-217 7-159 (198)
360 KOG1491 Predicted GTP-binding 97.3 0.00065 1.4E-08 76.6 8.0 81 72-152 16-126 (391)
361 KOG0091 GTPase Rab39, small G 97.3 0.0029 6.4E-08 64.6 11.9 136 77-218 9-158 (213)
362 PRK13796 GTPase YqeH; Provisio 97.3 0.00034 7.3E-09 81.5 6.1 54 76-131 160-221 (365)
363 KOG0086 GTPase Rab4, small G p 97.3 0.002 4.3E-08 65.0 10.5 107 77-184 10-128 (214)
364 cd03110 Fer4_NifH_child This p 97.3 0.006 1.3E-07 63.4 14.6 66 118-184 91-157 (179)
365 cd03114 ArgK-like The function 97.3 0.0019 4.1E-08 65.9 10.6 58 119-181 91-148 (148)
366 PRK09563 rbgA GTPase YlqF; Rev 97.2 0.0013 2.9E-08 74.1 9.5 92 128-235 8-103 (287)
367 cd02038 FleN-like FleN is a me 97.2 0.0034 7.3E-08 63.1 11.3 99 79-182 2-109 (139)
368 PF03193 DUF258: Protein of un 97.2 0.0004 8.6E-09 71.8 4.6 24 76-99 35-58 (161)
369 PRK12289 GTPase RsgA; Reviewed 97.2 0.00047 1E-08 79.8 5.7 51 77-129 173-233 (352)
370 PRK05703 flhF flagellar biosyn 97.2 0.0031 6.7E-08 75.0 12.6 126 76-214 221-391 (424)
371 PRK10867 signal recognition pa 97.1 0.0045 9.8E-08 73.6 13.5 26 73-98 97-122 (433)
372 cd01855 YqeH YqeH. YqeH is an 97.1 0.0015 3.3E-08 68.7 8.5 99 131-237 24-124 (190)
373 PRK06731 flhF flagellar biosyn 97.1 0.009 2E-07 66.9 14.6 127 75-214 74-245 (270)
374 PRK14723 flhF flagellar biosyn 97.0 0.0041 8.9E-08 78.0 12.7 127 75-214 184-357 (767)
375 PF09547 Spore_IV_A: Stage IV 97.0 0.01 2.2E-07 69.3 14.5 146 76-233 17-232 (492)
376 cd03112 CobW_like The function 97.0 0.0014 3E-08 67.4 7.0 22 78-99 2-23 (158)
377 PRK06995 flhF flagellar biosyn 97.0 0.0081 1.8E-07 72.2 14.4 127 75-214 255-425 (484)
378 TIGR00157 ribosome small subun 97.0 0.00096 2.1E-08 73.6 5.7 51 76-129 120-180 (245)
379 PRK12288 GTPase RsgA; Reviewed 97.0 0.00086 1.9E-08 77.6 5.6 24 77-100 206-229 (347)
380 KOG0083 GTPase Rab26/Rab37, sm 97.0 0.00048 1E-08 67.9 2.8 131 81-218 2-145 (192)
381 PRK12289 GTPase RsgA; Reviewed 97.0 0.0032 7E-08 73.0 10.0 83 137-233 86-170 (352)
382 PRK12727 flagellar biosynthesi 96.9 0.0072 1.6E-07 73.0 13.0 125 76-214 350-518 (559)
383 KOG2423 Nucleolar GTPase [Gene 96.9 0.00073 1.6E-08 77.1 4.2 73 48-130 287-362 (572)
384 cd01859 MJ1464 MJ1464. This f 96.9 0.002 4.4E-08 65.4 7.0 54 74-129 99-155 (156)
385 COG1419 FlhF Flagellar GTP-bin 96.9 0.0071 1.5E-07 70.5 12.0 107 75-185 202-353 (407)
386 cd03115 SRP The signal recogni 96.9 0.02 4.3E-07 59.2 14.0 63 119-185 82-154 (173)
387 PRK00098 GTPase RsgA; Reviewed 96.8 0.0039 8.4E-08 70.8 9.0 84 137-233 77-162 (298)
388 KOG2485 Conserved ATP/GTP bind 96.8 0.0032 7E-08 70.6 7.8 97 74-171 141-250 (335)
389 TIGR00959 ffh signal recogniti 96.7 0.014 3E-07 69.4 13.1 107 74-184 97-253 (428)
390 KOG0088 GTPase Rab21, small G 96.7 0.0032 6.9E-08 63.9 6.4 149 76-235 13-172 (218)
391 KOG4252 GTP-binding protein [S 96.7 0.0017 3.6E-08 67.2 4.4 108 76-185 20-139 (246)
392 PF02492 cobW: CobW/HypB/UreG, 96.7 0.0042 9E-08 65.0 7.5 83 120-211 85-177 (178)
393 TIGR00157 ribosome small subun 96.7 0.0087 1.9E-07 66.1 10.0 84 137-233 33-118 (245)
394 PRK11537 putative GTP-binding 96.6 0.021 4.5E-07 65.5 13.2 82 121-214 92-186 (318)
395 KOG2484 GTPase [General functi 96.6 0.0019 4.2E-08 74.2 4.6 54 74-129 250-306 (435)
396 cd01983 Fer4_NifH The Fer4_Nif 96.6 0.011 2.5E-07 53.6 8.7 68 78-154 1-72 (99)
397 PRK01889 GTPase RsgA; Reviewed 96.5 0.0086 1.9E-07 69.7 9.6 82 138-233 110-192 (356)
398 cd02042 ParA ParA and ParB of 96.5 0.015 3.3E-07 54.8 9.6 70 78-152 1-73 (104)
399 PRK00098 GTPase RsgA; Reviewed 96.5 0.0032 7E-08 71.4 5.7 25 76-100 164-188 (298)
400 COG1162 Predicted GTPases [Gen 96.5 0.0024 5.3E-08 71.8 4.5 26 74-99 162-187 (301)
401 KOG0097 GTPase Rab14, small G 96.5 0.034 7.4E-07 55.5 11.6 132 77-218 12-158 (215)
402 PRK13796 GTPase YqeH; Provisio 96.4 0.01 2.2E-07 69.3 9.2 97 130-234 58-155 (365)
403 KOG3905 Dynein light intermedi 96.4 0.073 1.6E-06 60.1 15.0 78 74-154 50-141 (473)
404 TIGR03597 GTPase_YqeH ribosome 96.4 0.0088 1.9E-07 69.7 8.1 97 130-234 52-149 (360)
405 cd01854 YjeQ_engC YjeQ/EngC. 96.4 0.0056 1.2E-07 69.1 6.3 26 75-100 160-185 (287)
406 KOG1534 Putative transcription 96.3 0.011 2.4E-07 63.1 7.6 65 120-185 98-179 (273)
407 COG0552 FtsY Signal recognitio 96.2 0.022 4.8E-07 64.9 10.2 128 73-214 136-318 (340)
408 KOG0081 GTPase Rab27, small G 96.2 0.0064 1.4E-07 61.9 5.0 134 79-218 12-166 (219)
409 KOG1487 GTP-binding protein DR 96.2 0.0038 8.3E-08 68.1 3.7 78 78-155 61-151 (358)
410 cd01854 YjeQ_engC YjeQ/EngC. 96.1 0.016 3.6E-07 65.4 8.6 82 138-233 76-159 (287)
411 PHA02518 ParA-like protein; Pr 96.1 0.089 1.9E-06 55.7 13.5 64 119-182 76-145 (211)
412 TIGR02475 CobW cobalamin biosy 96.1 0.035 7.6E-07 64.3 11.1 89 120-214 93-212 (341)
413 cd02037 MRP-like MRP (Multiple 96.0 0.013 2.8E-07 60.6 6.6 66 118-183 66-134 (169)
414 cd04178 Nucleostemin_like Nucl 95.9 0.015 3.3E-07 60.8 6.7 54 142-197 1-56 (172)
415 KOG0447 Dynamin-like GTP bindi 95.9 0.044 9.6E-07 65.0 10.7 65 119-184 411-493 (980)
416 KOG0780 Signal recognition par 95.9 0.04 8.7E-07 63.5 10.1 110 71-184 96-254 (483)
417 PRK12288 GTPase RsgA; Reviewed 95.9 0.034 7.4E-07 64.6 9.6 85 138-233 118-203 (347)
418 KOG0393 Ras-related small GTPa 95.8 0.025 5.4E-07 60.4 7.5 109 76-186 4-125 (198)
419 COG0523 Putative GTPases (G3E 95.7 0.077 1.7E-06 61.0 11.8 130 78-215 3-184 (323)
420 KOG1533 Predicted GTPase [Gene 95.6 0.029 6.3E-07 60.9 7.3 65 119-184 96-177 (290)
421 PF06858 NOG1: Nucleolar GTP-b 95.4 0.035 7.6E-07 47.7 5.5 47 134-181 7-58 (58)
422 PRK13695 putative NTPase; Prov 95.4 0.12 2.6E-06 53.6 10.8 22 78-99 2-23 (174)
423 KOG4181 Uncharacterized conser 95.4 0.15 3.2E-06 58.1 11.9 25 75-99 187-211 (491)
424 COG1763 MobB Molybdopterin-gua 95.4 0.049 1.1E-06 56.5 7.7 24 76-99 2-25 (161)
425 TIGR03348 VI_IcmF type VI secr 95.2 0.035 7.5E-07 74.1 7.4 107 78-185 113-258 (1169)
426 COG1618 Predicted nucleotide k 95.1 0.26 5.6E-06 51.2 11.6 26 74-99 3-28 (179)
427 PF05783 DLIC: Dynein light in 95.1 0.43 9.2E-06 57.7 15.5 79 74-154 23-114 (472)
428 PF05729 NACHT: NACHT domain 95.0 0.076 1.7E-06 53.3 7.9 26 77-102 1-26 (166)
429 KOG0057 Mitochondrial Fe/S clu 95.0 0.071 1.5E-06 64.1 8.4 23 77-99 379-401 (591)
430 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.0 0.22 4.9E-06 50.3 11.0 95 76-179 26-125 (144)
431 PRK08099 bifunctional DNA-bind 94.9 0.13 2.9E-06 60.8 10.5 27 74-100 217-243 (399)
432 KOG3886 GTP-binding protein [S 94.7 0.14 3E-06 55.7 9.0 108 77-184 5-130 (295)
433 PF00004 AAA: ATPase family as 94.7 0.17 3.8E-06 48.9 9.2 22 79-100 1-22 (132)
434 smart00382 AAA ATPases associa 94.5 0.24 5.2E-06 47.1 9.5 27 76-102 2-28 (148)
435 KOG0781 Signal recognition par 94.5 0.05 1.1E-06 64.1 5.4 87 119-214 466-565 (587)
436 PF13401 AAA_22: AAA domain; P 94.3 0.038 8.2E-07 53.8 3.4 25 77-101 5-29 (131)
437 PF03205 MobB: Molybdopterin g 94.2 0.14 3E-06 51.9 7.3 66 77-150 1-67 (140)
438 COG1116 TauB ABC-type nitrate/ 94.2 0.035 7.6E-07 61.0 3.2 24 77-100 30-53 (248)
439 cd01120 RecA-like_NTPases RecA 94.0 0.24 5.2E-06 49.3 8.7 23 78-100 1-23 (165)
440 KOG1673 Ras GTPases [General f 94.0 0.22 4.8E-06 51.0 8.2 138 73-217 17-170 (205)
441 COG0455 flhG Antiactivator of 94.0 0.83 1.8E-05 51.2 13.6 65 121-185 114-181 (262)
442 KOG3859 Septins (P-loop GTPase 94.0 0.17 3.6E-06 56.2 7.8 126 72-200 38-205 (406)
443 COG4987 CydC ABC-type transpor 93.8 0.19 4.1E-06 60.5 8.6 23 78-100 366-388 (573)
444 cd02117 NifH_like This family 93.8 0.23 4.9E-06 53.3 8.6 64 119-182 116-187 (212)
445 KOG2484 GTPase [General functi 93.8 0.2 4.4E-06 58.2 8.4 65 134-199 140-205 (435)
446 cd00009 AAA The AAA+ (ATPases 93.4 0.4 8.7E-06 46.2 8.9 27 75-101 18-44 (151)
447 cd02019 NK Nucleoside/nucleoti 93.4 0.19 4.1E-06 44.5 5.8 23 78-100 1-23 (69)
448 PRK13849 putative crown gall t 93.4 0.8 1.7E-05 50.3 12.0 62 119-181 83-151 (231)
449 COG3523 IcmF Type VI protein s 93.2 0.3 6.5E-06 64.3 9.7 133 50-184 100-270 (1188)
450 PRK08727 hypothetical protein; 93.2 0.63 1.4E-05 51.0 10.9 122 78-232 43-173 (233)
451 cd01131 PilT Pilus retraction 93.1 0.51 1.1E-05 50.4 9.8 25 77-101 2-26 (198)
452 COG1126 GlnQ ABC-type polar am 93.1 0.072 1.6E-06 57.6 3.2 23 77-99 29-51 (240)
453 TIGR01005 eps_transp_fam exopo 93.1 0.49 1.1E-05 60.6 11.3 63 120-182 656-720 (754)
454 KOG1707 Predicted Ras related/ 93.0 0.36 7.9E-06 58.5 9.1 103 76-184 425-540 (625)
455 TIGR03499 FlhF flagellar biosy 93.0 0.13 2.7E-06 58.2 5.2 27 75-101 193-219 (282)
456 KOG0096 GTPase Ran/TC4/GSP1 (n 92.9 0.25 5.5E-06 52.2 6.8 134 74-218 8-154 (216)
457 KOG2203 GTP-binding protein [G 92.8 0.12 2.5E-06 61.9 4.6 72 75-147 36-127 (772)
458 COG2274 SunT ABC-type bacterio 92.8 0.44 9.5E-06 60.4 10.0 25 77-101 500-524 (709)
459 PF13207 AAA_17: AAA domain; P 92.6 0.087 1.9E-06 50.8 2.9 23 78-100 1-23 (121)
460 KOG0052 Translation elongation 92.6 0.058 1.3E-06 62.6 1.8 111 74-185 5-157 (391)
461 PRK01889 GTPase RsgA; Reviewed 92.6 0.12 2.7E-06 60.2 4.6 24 77-100 196-219 (356)
462 PF00005 ABC_tran: ABC transpo 92.6 0.085 1.8E-06 52.0 2.7 25 77-101 12-36 (137)
463 TIGR00235 udk uridine kinase. 92.4 0.11 2.4E-06 55.6 3.6 27 74-100 4-30 (207)
464 PRK05480 uridine/cytidine kina 92.4 0.12 2.6E-06 55.2 3.9 27 74-100 4-30 (209)
465 PRK14737 gmk guanylate kinase; 92.4 0.14 3.1E-06 54.2 4.4 27 74-100 2-28 (186)
466 TIGR02858 spore_III_AA stage I 92.3 0.94 2E-05 51.0 10.8 25 77-101 112-136 (270)
467 COG1120 FepC ABC-type cobalami 92.2 0.1 2.3E-06 58.0 3.2 24 76-99 28-51 (258)
468 COG1136 SalX ABC-type antimicr 92.2 0.11 2.3E-06 56.8 3.2 22 78-99 33-54 (226)
469 COG3840 ThiQ ABC-type thiamine 92.2 0.11 2.4E-06 54.9 3.1 26 75-100 24-49 (231)
470 PRK05416 glmZ(sRNA)-inactivati 92.2 0.74 1.6E-05 52.3 9.9 77 74-171 4-86 (288)
471 PF05673 DUF815: Protein of un 92.2 0.49 1.1E-05 52.3 8.2 89 73-178 49-147 (249)
472 TIGR01663 PNK-3'Pase polynucle 92.1 0.38 8.3E-06 58.8 8.1 86 73-177 366-453 (526)
473 PRK10751 molybdopterin-guanine 92.1 0.13 2.7E-06 54.2 3.4 26 75-100 5-30 (173)
474 PRK09270 nucleoside triphospha 92.1 0.14 3E-06 55.8 3.9 29 73-101 30-58 (229)
475 COG1117 PstB ABC-type phosphat 92.1 0.2 4.3E-06 54.2 4.9 28 74-101 31-58 (253)
476 TIGR03029 EpsG chain length de 92.0 1.8 3.8E-05 48.3 12.7 56 120-176 213-270 (274)
477 COG1124 DppF ABC-type dipeptid 92.0 0.58 1.3E-05 51.5 8.4 83 78-172 35-132 (252)
478 PRK09841 cryptic autophosphory 91.8 1.3 2.9E-05 56.5 12.8 63 120-182 641-705 (726)
479 TIGR00176 mobB molybdopterin-g 91.6 0.29 6.2E-06 50.5 5.4 23 78-100 1-23 (155)
480 TIGR01007 eps_fam capsular exo 91.6 0.66 1.4E-05 49.3 8.4 64 120-183 128-193 (204)
481 COG1341 Predicted GTPase or GT 91.6 1 2.2E-05 52.9 10.3 27 73-99 70-96 (398)
482 COG3638 ABC-type phosphate/pho 91.6 0.14 3E-06 56.1 3.1 23 77-99 31-53 (258)
483 PRK11519 tyrosine kinase; Prov 91.6 1.6 3.5E-05 55.7 13.1 63 120-182 636-700 (719)
484 TIGR01969 minD_arch cell divis 91.5 0.83 1.8E-05 49.7 9.3 64 119-182 108-172 (251)
485 TIGR00554 panK_bact pantothena 91.5 0.16 3.5E-06 57.6 3.7 27 74-100 60-86 (290)
486 cd00071 GMPK Guanosine monopho 91.4 0.91 2E-05 45.6 8.7 23 78-100 1-23 (137)
487 COG1121 ZnuC ABC-type Mn/Zn tr 91.4 0.15 3.2E-06 56.6 3.2 24 76-99 30-53 (254)
488 PF13671 AAA_33: AAA domain; P 91.4 0.15 3.2E-06 50.6 2.9 23 78-100 1-23 (143)
489 PF05879 RHD3: Root hair defec 91.3 0.7 1.5E-05 59.0 9.5 122 82-204 1-158 (742)
490 COG0541 Ffh Signal recognition 91.3 1.6 3.4E-05 51.8 11.5 133 73-234 97-236 (451)
491 PRK14495 putative molybdopteri 91.1 0.52 1.1E-05 56.1 7.5 23 77-99 2-24 (452)
492 PF03266 NTPase_1: NTPase; In 91.1 0.83 1.8E-05 47.8 8.2 23 78-100 1-23 (168)
493 PF05621 TniB: Bacterial TniB 91.0 2 4.4E-05 48.9 11.8 41 54-100 45-85 (302)
494 cd03225 ABC_cobalt_CbiO_domain 91.0 0.17 3.7E-06 53.9 3.2 26 75-100 26-51 (211)
495 cd03261 ABC_Org_Solvent_Resist 91.0 0.17 3.7E-06 55.0 3.2 24 77-100 27-50 (235)
496 COG4167 SapF ABC-type antimicr 91.0 1.6 3.4E-05 46.4 10.0 60 77-141 40-110 (267)
497 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.0 0.18 3.8E-06 54.2 3.2 25 76-100 30-54 (218)
498 TIGR01166 cbiO cobalt transpor 90.9 0.18 4E-06 52.9 3.2 25 76-100 18-42 (190)
499 TIGR03574 selen_PSTK L-seryl-t 90.9 0.36 7.8E-06 53.2 5.6 23 78-100 1-23 (249)
500 PRK05800 cobU adenosylcobinami 90.9 0.53 1.2E-05 49.2 6.6 73 78-152 3-86 (170)
No 1
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-194 Score=1607.56 Aligned_cols=991 Identities=36% Similarity=0.615 Sum_probs=836.0
Q ss_pred CCCCCCCCCCCCCCCcchhhhccccccccccCCCCCccccccchHHHHHHHHHHHHHHHHhccCCcccccC-CCCCCeEE
Q 046721 1 MEQQPHKAHRARQSGSSAKKISKSEINKQDKKKPNPKAFGFASSVKAKRSMMRTAEKEQRRLHIPTIDRSY-GEPPPYVV 79 (1068)
Q Consensus 1 m~~~~~K~Hr~~~~g~k~~kkk~~~~~~~~~~~~n~kaf~~~~~~~~~r~~rr~~~k~~kr~~v~~~~R~~-~~~pP~~V 79 (1068)
|+ ++|++|++ |++|+.+|.. .+..|+|+|||++++..+++|++.|..+..++++|+|.++|++ ..+||++|
T Consensus 1 md-e~~~kh~k------a~~k~~~k~~-dg~~g~naKafavAa~G~mar~~~rtadi~ekklhVPmvdrtp~d~PPPfIv 72 (1077)
T COG5192 1 MD-EKKAKHSK------AEKKKLKKVM-DGKVGNNAKAFAVAAIGQMARQAMRTADIEEKKLHVPMVDRTPKDLPPPFIV 72 (1077)
T ss_pred Cc-chhhhhhh------HHHhhhhhhh-ccccccchhhhhhhchHHHHHHHhhccchhhhccccccccCCcccCCCCeEE
Confidence 54 66777763 3333322111 1236889999999999999999999999999999999999997 56788899
Q ss_pred EEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCChhHHHHHHHhcCEEEEEEeCCCCCchhHH
Q 046721 80 VVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPNDINGMIDCAKFADLALLLIDASHGFEMETF 159 (1068)
Q Consensus 80 aVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGdl~smld~akvADlVLlVIDas~g~e~~t~ 159 (1068)
||||+||+||||||++|+..++..++...+||||+++++.++|+|+.||.|+++|+|.+++||+|||+||+++||++++.
T Consensus 73 avvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~Dl~~miDvaKIaDLVlLlIdgnfGfEMETm 152 (1077)
T COG5192 73 AVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSDLHQMIDVAKIADLVLLLIDGNFGFEMETM 152 (1077)
T ss_pred EeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHHHHHHHhHHHhhheeEEEeccccCceehHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchHHHHHHhhcc
Q 046721 160 EFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFH 239 (1068)
Q Consensus 160 eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r 239 (1068)
+||++|..||+|+|++|++++|++++...++.+++.|+++||+++++++++||+|++.++.|+..++.||+|||+++++|
T Consensus 153 EFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~nGRYpDreilnLsRfisVMKfR 232 (1077)
T COG5192 153 EFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVENGRYPDREILNLSRFISVMKFR 232 (1077)
T ss_pred HHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccccCCCCCHHHHHHHHHHhhhccc
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCeEEEEeEEecCCCccccccCCCCceEEEEEEEEeeee-cCCcEEEEecCCCeeEEeeecCCCCCCCChh--
Q 046721 240 SLSWRTSHPYILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNL-KKGTKVHIAGAGDYSLAGVTGLADPCPLPSA-- 316 (1068)
Q Consensus 240 ~l~wR~~rPylLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L-~~nqlVhIpG~GdfqIk~I~~~~DP~pl~~~-- 316 (1068)
|+.||+.|||+|++|++++|-|..++++++.++.++||||++|++| +....|||||+|||.+..|+.++||||.|.+
T Consensus 233 Pl~Wrn~HPy~laDR~~Dlt~p~~ieq~~kv~rki~vYGYlhGt~Lp~~d~~vHIpGvGDf~~adve~L~DPcPp~~a~~ 312 (1077)
T COG5192 233 PLEWRNMHPYVLADRVDDLTLPVDIEQNPKVGRKITVYGYLHGTGLPRKDMEVHIPGVGDFRMADVEVLIDPCPPPDADH 312 (1077)
T ss_pred ccccccCCceeehhhhccccchhhhhhccccCceEEEEEEecCCCCCCCCceEeccCccccchhhhhhcCCCCCCCcccc
Confidence 9999999999999999999999999999999999999999999999 7788899999999999999999999997764
Q ss_pred hhcccccccccccccCCCCCCCccccCCceeeeccccccccccc----cccchhhhhccccCCchhhhhhhhcccccccC
Q 046721 317 AKKKGLRDKEKLFYAPMSGLGDLLYDKDAVYIDINDHFVQFSEY----QDVGVTLVKSLQNTKYPIDKKLEKSIISLFSQ 392 (1068)
Q Consensus 317 ~kkr~l~~k~k~iyaPms~vg~~~~dkda~yi~~~~~~~~~~~~----~~~~~~~v~~lq~~~~~~~~~l~~~~~~lf~~ 392 (1068)
.++|+|++|+++||+||||+|||++|||+|||+++.+ +|+.. .|+|+.|+..||.+...+. ....+++||++
T Consensus 313 ~rrRrLs~k~KliY~PMsdiGGil~dKD~vyiev~~~--n~s~~~~~eaGegekm~~~lq~~eq~~g--~dgvglqlFsn 388 (1077)
T COG5192 313 GRRRRLSLKSKLIYSPMSDIGGILKDKDRVYIEVPTS--NFSKDENSEAGEGEKMKMQLQEIEQDPG--VDGVGLQLFSN 388 (1077)
T ss_pred hhhcccchhhceeecccccccceeecccceeeecccc--CcCcCcccccchhhHHHHHHhhhccCCC--cCceeeEEecC
Confidence 3667899999999999999999999999999999988 45553 6999999999998876655 34578999999
Q ss_pred CCCCCcccccCCCCCCchh---------------hh---hcccccccccC-CCC----------------CCCCcchhhh
Q 046721 393 KPNVLSDATNNAKDMDDDT---------------EY---IHGKQYQTREG-TSN----------------GLGEKHVAEE 437 (1068)
Q Consensus 393 ~~~~~~~~~~~~~~~d~~~---------------~~---~~~~~~~~~~~-~~~----------------~~~~~~~~ee 437 (1068)
+..++..+-+ .|+-|+ ++ ++.-.|.+++- .++ .++++.++.-
T Consensus 389 sd~~d~~d~e---~~eid~~gr~t~rqp~Gk~i~eE~~~~Del~~dd~~~~~~De~ed~d~~~~~~~~nn~~e~~~e~~a 465 (1077)
T COG5192 389 SDAIDTVDRE---SSEIDNVGRKTRRQPTGKAIAEETSREDELSFDDSDVSTSDENEDVDFTGKKGAINNEDESDNEEVA 465 (1077)
T ss_pred Ccchhhcccc---cccccccccccccCCCCcchhhhhccccccCcccccccccccccccccccccccccCcccccchhhc
Confidence 7665432110 011000 00 00001111000 000 0111111111
Q ss_pred hhccccccccccccchhhhhhhhhcc----------cCCcccccccCCCC-chhcccccccCCCCCC-----CccCCCCc
Q 046721 438 MESLHEDADVKKGEKFSALAFKKSFG----------QCTNLIQLVYGKST-PTSATLSKEVQDSSDS-----EESDDDEF 501 (1068)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~k~~~~----------~~~~l~~~vyg~~~-~~~~~~~w~~d~~~~~-----~~~~~~~~ 501 (1068)
.+.+..+ ++..+...|++.++ +..|+.+++|..+. |.+.++.|..++++.. .++++++|
T Consensus 466 ~dsDSqf-----dese~~~~w~~~~a~kl~~sqs~kr~~ni~ki~y~e~lspeeci~e~kge~~~s~e~~~v~~D~~edf 540 (1077)
T COG5192 466 FDSDSQF-----DESEGNLRWKEGLASKLAYSQSGKRGRNIQKIFYDESLSPEECIEEYKGESAKSSESDLVVQDEPEDF 540 (1077)
T ss_pred ccccccc-----ccccccchhhhhhhhhhhhhhcccccccccceeccccCCHHHHHHHhccccccccccccccccCchhh
Confidence 1111111 11135678998766 56799999999987 7788889965433222 24667889
Q ss_pred cccccccccchhhcccccccCccccccccCC---CcCCCCCchhhHHHHHhhhccCCchhhhhhccccCCCCCCCCCCCc
Q 046721 502 FRPKVEGNKKLREVLDGRLFNMDECSKFNSY---GDLKSSKGEEVYESIRDRFVTGDWSKAAQRNQVSKGNSEGDDSDDA 578 (1068)
Q Consensus 502 f~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~w~~~~~~~~i~~~fvtg~~~~~~~~~~~~~~~~~~~~~~~e 578 (1068)
|++.+...++.. .+-.++.+. .-...|.. +..|+.+|.++...+..+ ..++.. .|.
T Consensus 541 f~vsk~~n~~~s----------~~~ek~~~~~fe~L~kkw~s---~~~lk~RF~~~~~lds~e-------g~EEl~-qd~ 599 (1077)
T COG5192 541 FDVSKVANESIS----------SNHEKLMESEFEELKKKWSS---LAQLKSRFQKDATLDSIE-------GEEELI-QDD 599 (1077)
T ss_pred hhhhhhcccccc----------cchhhhchhHHHHHHHHHhh---HHHHHHHhhccccccccc-------chhhhh-hch
Confidence 997644332220 011111110 01245644 567899999975432100 111111 233
Q ss_pred ccCCcccchhhhhhcCccCCCC-C--------CCccchhhH-HHHHHHHHHHHhhhhhhhhcCcccCCCCCCCCCcchHH
Q 046721 579 VSGDFEDLETVEKHQGHIKDNS-G--------SNAIENEYE-SAVERRLKKISLRKEIDEKDGAKFHCGQPNEIGLVDKM 648 (1068)
Q Consensus 579 ~~~dfedle~~e~~~~~~~~~~-~--------~~~~~~e~~-~~~~~~~~k~~lk~~f~~~y~~~~~~~~~~~~~~~~~~ 648 (1068)
+.|+|||++..|.......++. + +..++-.++ +++.++.+|+.||.+|..+-+| +.+...-+||..+
T Consensus 600 E~gn~ed~~d~e~~~d~e~ees~G~s~t~~~~e~~~e~~~e~ErE~na~kKE~lr~~Fe~eer~---d~e~~d~dwy~~e 676 (1077)
T COG5192 600 EKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKKEELRGNFELEERG---DPEKKDVDWYTEE 676 (1077)
T ss_pred hccCcccccccccccccchhhccCCcccccchhhccccchHHHhhhhhhhhhhhhcceeehhcc---CccccccchHHHH
Confidence 4588999987664332211111 1 111222244 6777899999999999988876 2334677899999
Q ss_pred hhhhHHHHHHhHHHhcCChhhhHhhhcCCCCCcEEEEEEecCchhhhhccCCCCceeeeeccccccceeEEEE-------
Q 046721 649 KEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRLGIHDVPFEMVEYFDPCHPVLVGGIGLGEENVGYMQV------- 721 (1068)
Q Consensus 649 ke~~~~~~~~~~~ef~~~d~~~r~~~eG~~~G~yvri~i~~vp~e~~~~fdp~~pli~~gLl~~E~~~~~~~~------- 721 (1068)
|+.+.+|..+|..+|+.|+++.|+.+|||++|+||||.|+.||.+||++|||.||||+|||||.|.+||+||.
T Consensus 677 K~ki~~ql~inr~e~e~M~Pe~r~~Ieg~raG~YVriv~~~vP~efv~~fn~r~piV~GGlLp~E~~~giVq~rikrhrW 756 (1077)
T COG5192 677 KRKIEEQLKINRSEFETMVPESRVVIEGYRAGRYVRIVLSHVPLEFVDEFNSRYPIVLGGLLPAEKEMGIVQGRIKRHRW 756 (1077)
T ss_pred HHHHHHHHhhhhhhhhhcCCcceeEeecccccceEEEEeccCCHHHHhhcCCCCcEEeccccchhhhhhhhhhHHHHhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----eccCCcEEEEeeeeeeeeeeeeeeecCCCceeEEeecCCCcEEEEEEEeecCCCCceEEEEEecCCCCCceEEEEE
Q 046721 722 ----LKTRDPIILSIGWRRFQTIPVYAIEDRNGWHRMLKYTPEHMHCLAMFWGPLAPPQTGVVAIQNFSNNQASFRITAT 797 (1068)
Q Consensus 722 ----lkskdpli~s~GwRRfq~~Piys~~~~n~r~r~lky~p~~~~c~atf~gPi~~~~t~~l~~~~~~~~~~~fri~at 797 (1068)
|||+||||||+|||||||+||||+.|+.+|+|||||||+||||.++||||+++||||||++|+. .+.|||+|+
T Consensus 757 hKKILKTNdPlifS~GWRRFQsiPvys~~DsrTRnRMlKYTPEhmhCn~sFYGP~v~pntgFc~Vqse---~g~frv~a~ 833 (1077)
T COG5192 757 HKKILKTNDPLIFSVGWRRFQSIPVYSMKDSRTRNRMLKYTPEHMHCNVSFYGPVVPPNTGFCAVQSE---KGDFRVLAL 833 (1077)
T ss_pred HHHHhccCCCeEEEechhhhcccceeeecchhhhhhhhhcCccceeeeeeeecCccCCCCCceeEEec---CCceEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999984 456999999
Q ss_pred EEEecccccceeeeeEEEecceeeEeeceEEEeccCCChhhhccccCCeeeecccccceeeccccccccCCCCCCCCCCC
Q 046721 798 AVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPR 877 (1068)
Q Consensus 798 G~vl~~d~~~~i~KklkL~G~P~Ki~k~ta~ik~MF~s~~eV~~F~~~~l~T~sGirG~IK~~l~~~~~~~~~~~~~~~p 877 (1068)
|+|.++|.+..|||||||+|||++|++||||||+||+|.+||++|+||+|+||||+||+||.|+|+
T Consensus 834 g~i~dv~~~~~lvkklklvg~p~qi~qnt~fvrdmfts~lev~kfega~lk~vsglrgqvk~~~~k-------------- 899 (1077)
T COG5192 834 GTITDVNGDAKLVKKLKLVGYPKQIVQNTVFVRDMFTSDLEVLKFEGASLKAVSGLRGQVKGPHGK-------------- 899 (1077)
T ss_pred eeeEeccccHHHHhhhhhccCcHHHhhhhHhHHHhhhhhhHHHhhcccceeeeccccccccCccCC--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceEEEeecccccccCEEEEecccccccCcccccccccCCCCCccccccccHHHHHHHcCCCCCCCCCCCCccccCCCCC
Q 046721 878 EGIARCTFEDRILMSDVVFMRGWADVEIPRFYNPLTTAMQPRDKIWQGMKTIAELRREHNLSIPVNKDSLYKAIGRRPRK 957 (1068)
Q Consensus 878 ~G~fra~Fe~ki~~~D~V~l~~~~~v~~~~fynpv~~~l~~~~~~w~~mrt~~~lr~e~~~~~~~~~ds~Y~~i~r~~r~ 957 (1068)
+|++||.||++|+|||||.||+|+||.+++||+||+|||+ .|+|+|.++|+|...|+..|.++||.|-.+||-.++
T Consensus 900 ~g~yra~fe~kmlmsdii~lr~~~pv~v~r~~~pv~~ll~----~wrglr~~~eir~sl~l~~~~~p~~~~~~~e~~~~~ 975 (1077)
T COG5192 900 NGEYRAVFEGKMLMSDIITLRCFVPVEVHRIFIPVDNLLG----KWRGLRRLHEIRESLGLTHSYAPQNDSSSEEMGYGA 975 (1077)
T ss_pred CccchheeccchhhhheeeEEeeeeeEEEEeeccHHHHHH----HHhhhHHHHHHHHHhCCCCCCCCCccchhhhhhccc
Confidence 9999999999999999999999999999999999999996 599999999999999999999999999999999999
Q ss_pred CCCCCCCHhhHhhCCCCCCCCCCcccccccccccccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046721 958 FNPLVIPKSLQAALPFESKPKDIPSRKRLFLENSRAVVMEPQERKVHALIQHLKLIRNEKMKKRKLKEARKRNEVEAERA 1037 (1068)
Q Consensus 958 f~~l~ipk~l~~~LPf~~kpk~~~~~~~~~~~~~ravv~~~~ekk~~~l~~~l~ti~~~k~~k~~~~~~~~~~~~~~~~~ 1037 (1068)
|+.+.+|+.+|+.|||+ +++.+++.+|+||+-|.|++....+|..-++-+-|..++|++++-.++++.++.+
T Consensus 976 ~~~~~~pr~ie~~lp~~--------kr~~~~~srr~~~~~~~e~r~k~~ik~~i~~~r~kd~~~ke~~~s~~r~k~~~i~ 1047 (1077)
T COG5192 976 EEDYSLPREIESKLPLD--------KRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIG 1047 (1077)
T ss_pred cccccCcHhHHhhCCcc--------hhhhhheeeeeeccCChhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998 4556789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 046721 1038 KDKQLTRKRQRGERQERYREQDKLKKK 1064 (1068)
Q Consensus 1038 ~~e~~~~~~~k~~~k~~~~~~~~~~~~ 1064 (1068)
|.|++|.+|.|+.+++.|++.+|++-+
T Consensus 1048 k~e~er~qr~r~~~~d~~~e~~kkr~k 1074 (1077)
T COG5192 1048 KKEKEREQRIRKTIHDNYKEMAKKRLK 1074 (1077)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999744
No 2
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.7e-109 Score=939.35 Aligned_cols=708 Identities=20% Similarity=0.278 Sum_probs=511.9
Q ss_pred CCCCCCCCCCCCCcchhhhcccccccccc-CCCCCccccccchHHHHHHHHHHHHHHHHhccC---Cccccc--CCCCCC
Q 046721 3 QQPHKAHRARQSGSSAKKISKSEINKQDK-KKPNPKAFGFASSVKAKRSMMRTAEKEQRRLHI---PTIDRS--YGEPPP 76 (1068)
Q Consensus 3 ~~~~K~Hr~~~~g~k~~kkk~~~~~~~~~-~~~n~kaf~~~~~~~~~r~~rr~~~k~~kr~~v---~~~~R~--~~~~pP 76 (1068)
.+.||+||++|+++-+ .+...++.++.. -+++|+ ...+|.+|||.++|.+++++ ....|. +..++|
T Consensus 10 k~~~k~~kskhrskg~-l~~~~kg~~~~~~~~~k~~-------~~~sk~~rrn~akqlr~qk~~~v~e~~~~~~g~n~a~ 81 (754)
T KOG1980|consen 10 KNANKPHKSKHRSKGA-LKRDYKGKVELKPLGHKPD-------KTVSKLQRRNQAKQLRKQKREDVLENTRLLGGQNGAP 81 (754)
T ss_pred cccCccccccccccch-hhhhcCCcccccccCCCch-------hhhhHHHHHhHHHHHHHhHHHHHHHhhhhcccccccc
Confidence 3578999997764434 444344443221 134442 23467777777777765544 444443 577899
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEe-CCCeeEEEEeCCCChhHHHHHHHhcCEEEEEEeCCCCCc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVS-GKKRRLQFVECPNDINGMIDCAKFADLALLLIDASHGFE 155 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~-~~k~rl~fIDtPGdl~smld~akvADlVLlVIDas~g~e 155 (1068)
.+|+++++.+-=++ ++.|. ....+++..+.|.+.. ..++++.|+-+-+++..+||+|++||+|||++++...++
T Consensus 82 ~li~~~pl~~~id~--~~~l~---E~i~~~~~~~~i~~~i~rFK~~~~fl~P~~n~~~~lD~~kv~D~~~f~~s~~~~~~ 156 (754)
T KOG1980|consen 82 KLITGLPLKNQIDP--LDILY---EGIMVQEVDSKINVHIPRFKSNLKFLTPKTNFLNILDAAKVSDFVVFLLSAVEEDD 156 (754)
T ss_pred ceeeccchhhhcch--hhhhh---hhhccccCCccceecchhhhhceeeeccccchhhhhhhhhhcceeeeecchhhhhh
Confidence 99999998765443 11222 1112222223333322 348899999666789999999999999999999998888
Q ss_pred hhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchHHHHHH
Q 046721 156 METFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 156 ~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
+.++.+++++++||+|++|.|+..+-.+. .+...++++.+..++...++....|+.+. ..++..+|+|.||+
T Consensus 157 e~ge~i~~~~~~qGi~s~v~~v~~L~sv~-~K~r~~vkK~l~~~~~k~f~s~~~v~~ld-------~~~dalnllR~l~~ 228 (754)
T KOG1980|consen 157 EFGEQIIRALEAQGIPSYVSVVSDLSSVH-EKFRLDVKKALEKRISKFFPSEKRVMRLD-------TSQDALNLLRGLCV 228 (754)
T ss_pred HHHHHHHHHHhhcCCccceeeecccchhc-hhhhHHHHHHHHHHHHHhCCCcchheecc-------ccchhHHHHHHhhh
Confidence 99999999999999999999999888886 56667889999999888888888899988 77899999999999
Q ss_pred hhcccccccccCCeEEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCCCeeEEee-ecCC---CCC
Q 046721 236 MKFHSLSWRTSHPYILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAGDYSLAGV-TGLA---DPC 311 (1068)
Q Consensus 236 ~k~r~l~wR~~rPylLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~GdfqIk~I-~~~~---DP~ 311 (1068)
.+++.+.||+.|+|++++-++++... ....|++.+.|||||..|++|++|||||.|||||.+| .... ||.
T Consensus 229 ~k~r~l~~rd~r~Yl~~~~vdf~s~~------s~~~gtL~i~G~vRG~~ln~NrLvHI~g~GDFqi~~I~~~p~~~qdp~ 302 (754)
T KOG1980|consen 229 QKPRVLHWRDNRGYLFADLVDFVSEL------SYSEGTLVIFGYVRGQELNVNRLVHIPGFGDFQINKIDEAPIDGQDPK 302 (754)
T ss_pred ccchheecccchhhhHHHhhhhcccc------CCCcceEEEEEEeecccccccceEeecCccceeEEEeecCCcccCCCc
Confidence 99999999999999998877776321 2347899999999999999999999999999999999 4444 566
Q ss_pred CCChhhhcccccccccccccCCCCCCCccccCCceeeeccccccccccccccchhhhhccccCCchhhhhhhhccccccc
Q 046721 312 PLPSAAKKKGLRDKEKLFYAPMSGLGDLLYDKDAVYIDINDHFVQFSEYQDVGVTLVKSLQNTKYPIDKKLEKSIISLFS 391 (1068)
Q Consensus 312 pl~~~~kkr~l~~k~k~iyaPms~vg~~~~dkda~yi~~~~~~~~~~~~~~~~~~~v~~lq~~~~~~~~~l~~~~~~lf~ 391 (1068)
||.. . +|.|-.++|.- ...+....++.
T Consensus 303 ~ik~----~----------~~~s~e~~i~~-------------------------------qsdpd~~~~l~-------- 329 (754)
T KOG1980|consen 303 IIKK----F----------IDLSLEFCIST-------------------------------QSDPDKADSLE-------- 329 (754)
T ss_pred ccCc----c----------CCCCcceeeec-------------------------------ccChhHhhhhh--------
Confidence 5542 1 11111111100 00011111111
Q ss_pred CCCCCCcccccCCCCCCchhhhhcccccccccCCCCCCCCcchhhhhhccccccccccccchhhhhhhhhcccCCccccc
Q 046721 392 QKPNVLSDATNNAKDMDDDTEYIHGKQYQTREGTSNGLGEKHVAEEMESLHEDADVKKGEKFSALAFKKSFGQCTNLIQL 471 (1068)
Q Consensus 392 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~l~~~ 471 (1068)
....+|+||.|+ +|++++ +.... ..+.+ ......++
T Consensus 330 --------~~~~pD~md~e~------~~~t~d-------------e~~~~----~~~~~-------------~~~~~~~V 365 (754)
T KOG1980|consen 330 --------SEHTPDDMDVEQ------DWPTRD-------------ESNVA----IKETE-------------PMKRPKRV 365 (754)
T ss_pred --------hcCCCchhhhhc------cccchh-------------hhhhh----ccccc-------------hhcccccc
Confidence 112345665553 577721 11000 00011 11234567
Q ss_pred ccCCCCchhcccccccCCCCCCCccCCCCccccccccccchhhcccccccCccccccccCCCcCCCCCchhhHHHHHhhh
Q 046721 472 VYGKSTPTSATLSKEVQDSSDSEESDDDEFFRPKVEGNKKLREVLDGRLFNMDECSKFNSYGDLKSSKGEEVYESIRDRF 551 (1068)
Q Consensus 472 vyg~~~~~~~~~~w~~d~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~w~~~~~~~~i~~~f 551 (1068)
++|+| +|||+|+.|+++++|..++.+-+... . + +.+. ..+-..||..+++.
T Consensus 366 PKg~S---~yqa~wi~de~~~~dk~d~~ed~~m~--i------e--d~~~-------------de~~~~EE~~ds~~--- 416 (754)
T KOG1980|consen 366 PKGTS---DYQAAWILDEEEESDKEDDNEDTEME--I------E--DEFE-------------DEDSDEEELRDSIE--- 416 (754)
T ss_pred CCCcc---ccceeeecCCcccccccccccchhhh--h------h--hhhh-------------hccccchhhhcccc---
Confidence 89998 99999998755444332222110000 0 0 0000 00011122221110
Q ss_pred ccCCchhhhhhccccCCCCCCCCCCCcccCCcccchhhhhhcCcc-----CCCCCCCccchhhHHHHHHHHHHHHhhhhh
Q 046721 552 VTGDWSKAAQRNQVSKGNSEGDDSDDAVSGDFEDLETVEKHQGHI-----KDNSGSNAIENEYESAVERRLKKISLRKEI 626 (1068)
Q Consensus 552 vtg~~~~~~~~~~~~~~~~~~~~~~~e~~~dfedle~~e~~~~~~-----~~~~~~~~~~~e~~~~~~~~~~k~~lk~~f 626 (1068)
++. -++++.++|.|++..++....+ .+++.+...++|.+ .+....+++++
T Consensus 417 ---------------~~~-----~~~~~~d~~~D~~~dee~re~~e~~k~~ker~e~~fPDEvd-t~~d~~Arerf---- 471 (754)
T KOG1980|consen 417 ---------------AGG-----TEAEESDGFYDESSDEEARESEELEKYQKEREESEFPDEVD-TPPDESARERF---- 471 (754)
T ss_pred ---------------ccc-----cchhhccccccccchhhHHhHHHHHHHHHHhHhhhCCCccc-cCCChHHHHHH----
Confidence 000 0011112333333322211100 01111223333333 22334455555
Q ss_pred hhhcCcccCCCCCCCCCcchHHhhhhHHHHHHhHHHhcCChhhhH-hhhc---CCC--CCcEEEEEEecCchhhhhccCC
Q 046721 627 DEKDGAKFHCGQPNEIGLVDKMKEEIEFRKQMNIAELNDLDEVTR-LELE---GFR--TGTYLRLGIHDVPFEMVEYFDP 700 (1068)
Q Consensus 627 ~~~y~~~~~~~~~~~~~~~~~~ke~~~~~~~~~~~ef~~~d~~~r-~~~e---G~~--~G~yvri~i~~vp~e~~~~fdp 700 (1068)
++|||+++ +++|+|+. +|++|..| +++++|+|++.+++ +.-+ -+. +|+||||+|+|||..+++.|.+
T Consensus 472 -qkYRGLks---l~Ts~Wd~--~En~P~dy-~rlfqF~Nyrntkk~i~kk~~~e~~~~~G~~V~v~l~nvP~~i~E~~~~ 544 (754)
T KOG1980|consen 472 -QKYRGLKS---LRTSPWDA--KENLPADY-ARLFQFQNYRNTKKRILKKEDNEAEAIPGQYVRVFLRNVPVSILEAIKK 544 (754)
T ss_pred -HHhccccc---cccCCCcc--cccCcHHH-HHHHhhhhhhhHHHHhhhhcccccccCCCceEEEEeecCcHHHHHHHhh
Confidence 56889776 99999999 67999999 89999999999864 2221 134 9999999999999999999999
Q ss_pred CCceeeeeccccccceeEEEE-----------eccCCcEEEEeeeeeeeeeeeeeeecCCCceeEEeecCCCcEEEEEEE
Q 046721 701 CHPVLVGGIGLGEENVGYMQV-----------LKTRDPIILSIGWRRFQTIPVYAIEDRNGWHRMLKYTPEHMHCLAMFW 769 (1068)
Q Consensus 701 ~~pli~~gLl~~E~~~~~~~~-----------lkskdpli~s~GwRRfq~~Piys~~~~n~r~r~lky~p~~~~c~atf~ 769 (1068)
..+|||+|||+||++|+|+|| |||+++|||+||+|||.++|+||+++.|.+|||+||.|+.+..+||||
T Consensus 545 ~~~lvvfglL~hEhKmtV~Nfvl~r~p~~e~Plkske~livq~G~Rrf~i~PlfSs~t~ndkhK~eRfl~~~~a~vaTvi 624 (754)
T KOG1980|consen 545 QLLLVVFGLLPHEHKMTVLNFVLQRHPGYEEPLKSKEELIVQCGFRRFDINPLFSSHTPNDKHKYERFLPPDEAVVATVI 624 (754)
T ss_pred ccceeeeeccchhhhheeeEEEEecCCCCCccccccceeEEEeccceEEeccccccCCccchhhhhhhcCccceEEEEEE
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCceEEEEEecCCCCCceEEEEEEEEecccccceeeeeEEEecceeeEeeceEEEeccCCChhhhccccCCeeee
Q 046721 770 GPLAPPQTGVVAIQNFSNNQASFRITATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRT 849 (1068)
Q Consensus 770 gPi~~~~t~~l~~~~~~~~~~~fri~atG~vl~~d~~~~i~KklkL~G~P~Ki~k~ta~ik~MF~s~~eV~~F~~~~l~T 849 (1068)
|||+|+++|||+|+..++ .+.+++|||.++++||+|+|+||.+|+||||||||+.|+|||||||++||.||+|++|+|
T Consensus 625 aPI~F~ps~vL~FK~s~~--~~~~LiAtG~~l~~dpdRiv~KRaVLsGhPfKi~kk~v~VRYMFFn~EDV~wFKpIqL~T 702 (754)
T KOG1980|consen 625 APITFGPSPVLIFKKSSD--GSLELIATGSLLNCDPDRIVAKRAVLSGHPFKIHKKYVVVRYMFFNREDVEWFKPIQLYT 702 (754)
T ss_pred eccccCCcceEEEEeCCC--cccceeeeeeeeccCCcceeEeeeeecCCCceeeeeeEEEeeecCCHhHeeeecceeeec
Confidence 999999999999998765 488999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeccccccccCCCCCCCCCCCCceEEEeecccccccCEEEEecccccccCccccc
Q 046721 850 VSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDVVFMRGWADVEIPRFYNP 911 (1068)
Q Consensus 850 ~sGirG~IK~~l~~~~~~~~~~~~~~~p~G~fra~Fe~ki~~~D~V~l~~~~~v~~~~fynp 911 (1068)
++||+||||||||| ||+|||+|+++|+.+|+|+|+|||||||.|.|++
T Consensus 703 k~gR~GhIKEplGT--------------HG~fKc~FdgkLksqDtV~MsLYKRvfP~~~y~~ 750 (754)
T KOG1980|consen 703 KSGRTGHIKEPLGT--------------HGYFKCYFDGKLKSQDTVMMSLYKRVFPKWTYWN 750 (754)
T ss_pred cccccccccccccC--------------cceeEEEecCcccccchHHHHHHHhhcccccccc
Confidence 99999999999999 9999999999999999999999999999999954
No 3
>COG5177 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.9e-85 Score=724.10 Aligned_cols=708 Identities=16% Similarity=0.183 Sum_probs=497.7
Q ss_pred CCCCCCCCCCcchhhhcccccccccc--CCCCCccccccchHHHHHHHHHHHHHHHHhccC--Cccccc---CCCCCCeE
Q 046721 6 HKAHRARQSGSSAKKISKSEINKQDK--KKPNPKAFGFASSVKAKRSMMRTAEKEQRRLHI--PTIDRS---YGEPPPYV 78 (1068)
Q Consensus 6 ~K~Hr~~~~g~k~~kkk~~~~~~~~~--~~~n~kaf~~~~~~~~~r~~rr~~~k~~kr~~v--~~~~R~---~~~~pP~~ 78 (1068)
||+.|.+|+ +|...|..-|+.++.. +-.|| ...+.++.|||.++|.+-..+ ...++. +..|+|.+
T Consensus 12 ~k~ykskha-sk~alk~~yk~kve~~~~g~~~~-------~~~~~k~dRrN~aKq~~~~~i~~~~en~~~f~gknGa~kv 83 (769)
T COG5177 12 HKSYKSKHA-SKGALKRLYKGKVEKEPVGTGKP-------DKQMKKRDRRNRAKQKSIGSIARIKENKLPFSGKNGAYKV 83 (769)
T ss_pred CCccccccc-chhHHHHHhcCCccccCCCCCCc-------hhhhHHhhhhhhHHHhhhhHHHHHHhhcCcccCCCCCceE
Confidence 445555665 3433554345555432 22243 234567778888877665544 233333 57799999
Q ss_pred EEEECCCCCChh-HHHHHHHhcc--ccCCCCceeccEEEE--e-CCCeeEEEEeCCC-ChhHHHHHHHhcCEEEEEEeCC
Q 046721 79 VVVQGPPQVGKS-LLIKCLIKHY--TKLKVPEVRGPVTVV--S-GKKRRLQFVECPN-DINGMIDCAKFADLALLLIDAS 151 (1068)
Q Consensus 79 VaVVG~pnvGKS-TLIn~L~~~~--~~~~~~tt~~~Iti~--~-~~k~rl~fIDtPG-dl~smld~akvADlVLlVIDas 151 (1068)
|.||++.|-=.+ .++..|+.+. ....++...+.+... . ..+.++.|+-+-- ++.+++++|+++|+|||++++.
T Consensus 84 ItIVpL~n~~d~~dil~klL~~~d~e~~m~q~~~~~~~ys~~i~~fK~Nllf~~pd~~~f~~l~d~ckVsD~VvF~ls~v 163 (769)
T COG5177 84 ITIVPLGNECDGYDILDKLLHGNDDEGIMVQEVDGGLFYSVHIEEFKMNLLFKRPDELSFFQLGDVCKVSDIVVFGLSDV 163 (769)
T ss_pred EEEeecccccchHHHHHHHHccCCcccccceeccCceEEeeeHHHhhcceeEeccchhhhhhhhhhheeccEEEEEecch
Confidence 999998654333 3455555543 223344444444422 1 2377777774433 4778999999999999999998
Q ss_pred CCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchHH
Q 046721 152 HGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAE 231 (1068)
Q Consensus 152 ~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR 231 (1068)
..+++.++.+.+.++.||+.++|.++..+-.+...+....+++.|++++..+|+...+||.+.+ ..++.|++|
T Consensus 164 qEVDefge~i~r~l~~qgI~s~i~~~~~ls~v~s~k~~~~vKqslesf~~~fFp~~ERV~~~~~-------~~DALnv~R 236 (769)
T COG5177 164 QEVDEFGEQIGRKLKLQGIKSFIPSCLFLSSVQSEKRDAAVKQSLESFVRRFFPSKERVVEIGG-------LMDALNVVR 236 (769)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCchhheeeccc-------cHHHHHHHH
Confidence 8888888899999999999888877766655544345567889999999999999999999884 478899999
Q ss_pred HHHHhhcccccccccCCeEEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCCCeeEEeeecCCCCC
Q 046721 232 FISVMKFHSLSWRTSHPYILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAGDYSLAGVTGLADPC 311 (1068)
Q Consensus 232 ~I~~~k~r~l~wR~~rPylLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~GdfqIk~I~~~~DP~ 311 (1068)
.+|+..+|.+.||++|||++..... ..+|.+.+.|.|||..+++|+++||||.|||++.+|...+.-
T Consensus 237 ~lcts~pR~i~wrdnR~Yiv~~e~s------------ys~G~l~~~g~VrG~g~n~nrL~Hi~~fgdF~~nkI~~~~q~- 303 (769)
T COG5177 237 ILCTSVPRSINWRDNRPYIVPSEAS------------YSDGELFYEGTVRGIGFNANRLKHIPDFGDFLSNKIIVNGQY- 303 (769)
T ss_pred HHhccCCcccccccCCceeeecccc------------cCCCceEEEEEeeccccCchheeecCccchhhhheeeeccch-
Confidence 9999999999999999999984421 237889999999999999999999999999999999876521
Q ss_pred CCChhhhcccccccccccccCCCCCCCccccCCceeeeccccccccccccccchhhhhccccCCchhhhhhhhccccccc
Q 046721 312 PLPSAAKKKGLRDKEKLFYAPMSGLGDLLYDKDAVYIDINDHFVQFSEYQDVGVTLVKSLQNTKYPIDKKLEKSIISLFS 391 (1068)
Q Consensus 312 pl~~~~kkr~l~~k~k~iyaPms~vg~~~~dkda~yi~~~~~~~~~~~~~~~~~~~v~~lq~~~~~~~~~l~~~~~~lf~ 391 (1068)
. ++-| +|..|++. ++. -.| +.+|.
T Consensus 304 ---~-q~~r-----------------~I~~d~at---~l~-----------------~~l---------------~~v~~ 327 (769)
T COG5177 304 ---E-QTIR-----------------EIFADRAT---KLE-----------------LDL---------------QTVFE 327 (769)
T ss_pred ---h-hhHH-----------------HHhhhhcc---ccc-----------------cch---------------hhhcc
Confidence 1 0111 22223221 010 011 12444
Q ss_pred CCCCCCcccccCCC--CCCchhhhhcccccccccCCCCCCCCcchhhhhhccccccccccccchhhhhhhhhcccCCccc
Q 046721 392 QKPNVLSDATNNAK--DMDDDTEYIHGKQYQTREGTSNGLGEKHVAEEMESLHEDADVKKGEKFSALAFKKSFGQCTNLI 469 (1068)
Q Consensus 392 ~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~l~ 469 (1068)
+....++.++..|. ||+.|-++ .+.- +. .-....++..+.++.++. ....
T Consensus 328 ~~~~rdtld~~~p~g~d~~sd~d~----d~~~-------d~--~~~vr~Dd~~f~~~~eq~---------------~~~a 379 (769)
T COG5177 328 SNMNRDTLDEYAPEGEDLRSDYDE----DFEY-------DG--LTTVRIDDHGFLPGREQT---------------SKKA 379 (769)
T ss_pred ccccccchhhcCCccccchhhhhh----hhcc-------cc--cceeEecccccCCccccc---------------chhh
Confidence 44333333222221 11111000 0000 00 000012222233332221 1223
Q ss_pred ccccCCCCchhcccccccCCCCCCCcc-CCCCccccccccccchhhcccccccCccccccccCCCcCCCCCchhhHHHHH
Q 046721 470 QLVYGKSTPTSATLSKEVQDSSDSEES-DDDEFFRPKVEGNKKLREVLDGRLFNMDECSKFNSYGDLKSSKGEEVYESIR 548 (1068)
Q Consensus 470 ~~vyg~~~~~~~~~~w~~d~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~w~~~~~~~~i~ 548 (1068)
++++||| .|||.|+.|++++++.- +.++. +. . ++..|.. .-++++
T Consensus 380 avpkGts---~yqa~w~~deeee~~q~nd~e~t----------m~-~-----idd~d~~---------E~dnee------ 425 (769)
T COG5177 380 AVPKGTS---FYQAKWAEDEEEEDGQCNDEEST----------MS-A-----IDDDDPK---------ENDNEE------ 425 (769)
T ss_pred ccCCCCc---ccceeecccchhhccccCchhhh----------hh-h-----hcccCch---------hccccc------
Confidence 5789998 99999987744333210 11110 00 0 0000000 000010
Q ss_pred hhhccCCchhhhhhccccCCCCCCCCCCCcccCCcccchhhhhhcCcc-----CCCCCCCccchhhHHHHHHHHHHHHhh
Q 046721 549 DRFVTGDWSKAAQRNQVSKGNSEGDDSDDAVSGDFEDLETVEKHQGHI-----KDNSGSNAIENEYESAVERRLKKISLR 623 (1068)
Q Consensus 549 ~~fvtg~~~~~~~~~~~~~~~~~~~~~~~e~~~dfedle~~e~~~~~~-----~~~~~~~~~~~e~~~~~~~~~~k~~lk 623 (1068)
|.|+- +..-|| .+.||||..+|..+..+ +.++.+++++.++ ++...+.+++
T Consensus 426 ---v~~De---------------E~~idD--ne~f~els~eee~rq~~efr~~eked~efpde~el---qPse~aier~- 481 (769)
T COG5177 426 ---VAGDE---------------ESAIDD--NEGFEELSPEEEERQLREFRDMEKEDREFPDEAEL---QPSESAIERY- 481 (769)
T ss_pred ---ccCch---------------hhcccc--cccchhcChHHHHHHHHHHHhhhhhhccCchhhcc---CccHHHHHHH-
Confidence 11110 001111 25799998776544321 2334455555443 3445566666
Q ss_pred hhhhhhcCcccCCCCCCCCCcchHHhhhhHHHHHHhHHHhcCChhhhH----hhhcC-CCCCcEEEEEEecCchhhhhcc
Q 046721 624 KEIDEKDGAKFHCGQPNEIGLVDKMKEEIEFRKQMNIAELNDLDEVTR----LELEG-FRTGTYLRLGIHDVPFEMVEYF 698 (1068)
Q Consensus 624 ~~f~~~y~~~~~~~~~~~~~~~~~~ke~~~~~~~~~~~ef~~~d~~~r----~~~eG-~~~G~yvri~i~~vp~e~~~~f 698 (1068)
++|||+++ ..+++|....|..-.+..|.+..-|+|+..+.. .-.++ ..+|..|||.|+ +|..+.+.+
T Consensus 482 ----k~YRGlrn---Lytc~w~~de~dps~P~ewk~L~~f~nyrn~kn~~vk~~~~~~a~~G~~vri~lr-~p~~l~E~~ 553 (769)
T COG5177 482 ----KEYRGLRN---LYTCSWRSDEKDPSFPEEWKSLVFFDNYRNAKNLVVKKDNESVAPDGQMVRIKLR-FPKFLYEGL 553 (769)
T ss_pred ----HHhccccc---ccccccccccCCCCChHHHhhheeccchhhhhhheecCCccccCCCCcEEEEEEe-ccHHHHhhh
Confidence 67999776 678999988888878888899999999987742 12234 689999999999 999999987
Q ss_pred C-CCCceeeeeccccccceeEEEE-----------eccCCcEEEEeeeeeeeeeeeeeeec--CCCceeEEeecCCCcEE
Q 046721 699 D-PCHPVLVGGIGLGEENVGYMQV-----------LKTRDPIILSIGWRRFQTIPVYAIED--RNGWHRMLKYTPEHMHC 764 (1068)
Q Consensus 699 d-p~~pli~~gLl~~E~~~~~~~~-----------lkskdpli~s~GwRRfq~~Piys~~~--~n~r~r~lky~p~~~~c 764 (1068)
. |..-|+|+|||.||++.+|.|| |+|+++|++++|.|||.++|+||... .|+-|+|+||+|+....
T Consensus 554 ~~p~~llvvygll~yE~k~tV~nFs~~rh~eye~P~~s~E~~vvq~G~rr~~i~Pl~s~~s~s~Nn~qKy~r~l~p~~~~ 633 (769)
T COG5177 554 IEPQILLVVYGLLEYEDKKTVHNFSLQRHFEYEVPLKSEESMVVQLGHRRVDICPLISKGSNSPNNNQKYFRRLKPLESG 633 (769)
T ss_pred cccceeeeeeehhhhcchhhhhhhhhhhhhcccCCCCcccceeeeeccceEEEeehhccCCCCCcchHHHHhhcCcccee
Confidence 5 5566777999999999999999 99999999999999999999999843 46788999999999999
Q ss_pred EEEEEeecCCCCceEEEEEecCCCCCceEEEEEEEEecccccceeeeeEEEecceeeEeeceEEEeccCCChhhhccccC
Q 046721 765 LAMFWGPLAPPQTGVVAIQNFSNNQASFRITATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEG 844 (1068)
Q Consensus 765 ~atf~gPi~~~~t~~l~~~~~~~~~~~fri~atG~vl~~d~~~~i~KklkL~G~P~Ki~k~ta~ik~MF~s~~eV~~F~~ 844 (1068)
+|||+|||.|+++|+|+|+.......+.+++|||+.+++|++++|+||.+|||||||+||+.++||||||||+||.||++
T Consensus 634 vas~I~Pi~Fg~spvi~fkkS~~d~~s~~l~a~g~~~n~d~~rviakrAvLtGhPFk~hK~~vtvryMFf~pEdV~wFk~ 713 (769)
T COG5177 634 VASFIGPISFGLSPVIIFKKSALDELSATLLASGGMNNFDGDRVIAKRAVLTGHPFKNHKRYVTVRYMFFSPEDVMWFKN 713 (769)
T ss_pred eeEEEcceeccCcceEEEccCccchhhhhhhhcccccccCcchhhhhhhhhcCCCcccceeEEEEeeecCCHhHeeeecc
Confidence 99999999999999999998765567899999999999999999999999999999999999999999999999999999
Q ss_pred CeeeecccccceeeccccccccCCCCCCCCCCCCceEEEeecccccccCEEEEeccccccc
Q 046721 845 KEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDVVFMRGWADVEI 905 (1068)
Q Consensus 845 ~~l~T~sGirG~IK~~l~~~~~~~~~~~~~~~p~G~fra~Fe~ki~~~D~V~l~~~~~v~~ 905 (1068)
++|+|++|+.|.||+|||| ||+|||||+++|..+|+|.|+||+|+||
T Consensus 714 Iqlftk~grtGfIKeplGT--------------hGyFKatF~gki~~qD~VaMSLYKRm~p 760 (769)
T COG5177 714 IQLFTKRGRTGFIKEPLGT--------------HGYFKATFSGKIKSQDKVAMSLYKRMFP 760 (769)
T ss_pred hhhhhhcCccceecccccC--------------cceeeEEecCcccccchhhHHHHHHhcc
Confidence 9999999999999999999 9999999999999999999999999996
No 4
>PF04950 DUF663: Protein of unknown function (DUF663); InterPro: IPR007034 This domain is found at the C terminus of the ribosome biogenesis protein BMS1 and TSR1 families, which may act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.; PDB: 1WB1_D 1WB3_B 1WB2_A.
Probab=100.00 E-value=1.8e-85 Score=726.78 Aligned_cols=258 Identities=41% Similarity=0.686 Sum_probs=79.4
Q ss_pred hhcCcccCCCCCCCCCcchHH-hhhhHHHHHHhHHHhcCChhhh-------------HhhhcCCCCCcEEEEEEecCchh
Q 046721 628 EKDGAKFHCGQPNEIGLVDKM-KEEIEFRKQMNIAELNDLDEVT-------------RLELEGFRTGTYLRLGIHDVPFE 693 (1068)
Q Consensus 628 ~~y~~~~~~~~~~~~~~~~~~-ke~~~~~~~~~~~ef~~~d~~~-------------r~~~eG~~~G~yvri~i~~vp~e 693 (1068)
++|||+++ +++|+|++.. ..++|.+| .++++|+|+..+. +.+.+|++||+||||+|++||++
T Consensus 15 ~KyRgLKs---~r~s~wD~~E~~~~lP~~y-~ri~~f~n~~~~k~~~~~~~~~~~~~~~~~~g~~~G~YVrI~i~~vP~~ 90 (297)
T PF04950_consen 15 QKYRGLKS---FRTSEWDPDEKDPNLPEDY-SRIFQFENFKRTKKRALKEAELDEEEREQEEGVRPGTYVRIEISNVPCE 90 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccc---ccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 56777655 8888888853 12677777 7888888876653 24578999999999999999999
Q ss_pred hhhccCCCCceeeeeccccccceeEEEE-----------eccCCcEEEEeeeeeeeeeeeeeeecCCCceeEEeecCCCc
Q 046721 694 MVEYFDPCHPVLVGGIGLGEENVGYMQV-----------LKTRDPIILSIGWRRFQTIPVYAIEDRNGWHRMLKYTPEHM 762 (1068)
Q Consensus 694 ~~~~fdp~~pli~~gLl~~E~~~~~~~~-----------lkskdpli~s~GwRRfq~~Piys~~~~n~r~r~lky~p~~~ 762 (1068)
++++|+|++||||||||+||+++||||+ ||||||||||||||||||+||||++++|+||||+||+|+||
T Consensus 91 ~~~~~~~~~Plil~gLl~~E~k~svv~~~ikrh~~~~~~lkSkd~li~~~G~Rrf~~~Pifs~~~~~~r~k~~k~~~~~~ 170 (297)
T PF04950_consen 91 FVENFDPSYPLILGGLLPHEQKMSVVNFRIKRHRWYEKPLKSKDPLIFSCGWRRFQTIPIFSQEDNNNRHKYEKYLPEGM 170 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred EEEEEEEeecCCCCceEEEEEecCCCCCceEEEEEEEEecccccceeeeeEEEecceeeEeeceEEEeccCCChhhhccc
Q 046721 763 HCLAMFWGPLAPPQTGVVAIQNFSNNQASFRITATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQC 842 (1068)
Q Consensus 763 ~c~atf~gPi~~~~t~~l~~~~~~~~~~~fri~atG~vl~~d~~~~i~KklkL~G~P~Ki~k~ta~ik~MF~s~~eV~~F 842 (1068)
||+||||||++|||||||+|++.++...+|||+|||+|+++|++++|+|||+|+||||||||||||||+||||++||+||
T Consensus 171 ~~~at~ygPi~~~~~~vl~f~~~~~~~~~~~l~atG~v~~~d~~~~i~Kki~L~G~P~ki~k~~a~vr~MF~~~~dv~~F 250 (297)
T PF04950_consen 171 HCVATFYGPITFPPTPVLAFKESSNSGSSFRLVATGSVLNVDPDRIIVKKIKLTGYPFKIHKRTAVVRGMFFNPEDVAWF 250 (297)
T ss_dssp -------------------------TTTSS-B-EEEEEEEE--GGGS-B--EEEEEEEEEESSSCEECSSSSTCCHHHHS
T ss_pred ccccccccccccccccccccccccccCCCceEEEeeeEeCCCCcchhheeeeecCchheEECceEEhhhhcCCHHHHHhh
Confidence 99999999999999999999997665568999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeecccccceeeccccccccCCCCCCCCCCCCceEEEeecccccccCEEEEeccccc
Q 046721 843 EGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDVVFMRGWADV 903 (1068)
Q Consensus 843 ~~~~l~T~sGirG~IK~~l~~~~~~~~~~~~~~~p~G~fra~Fe~ki~~~D~V~l~~~~~v 903 (1068)
+||+|+|+||||||||+|||| ||+|||+||++|++||||||+||+||
T Consensus 251 ~~~~l~T~~G~rG~Ik~~lgt--------------~G~fka~F~~~i~~~D~V~~~lykrV 297 (297)
T PF04950_consen 251 KGAELRTKSGIRGHIKESLGT--------------HGYFKATFEDKIKQSDIVFMRLYKRV 297 (297)
T ss_dssp -S--BEETTS-BEEEEE-BTT--------------TTBBEEEESS---SS-EEEEE-----
T ss_pred cCCEEEeeccCCCEECeeECC--------------CCcEEEEECCcCCCCCEEEEecCCCC
Confidence 999999999999999999998 99999999999999999999999998
No 5
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=100.00 E-value=2.7e-32 Score=293.88 Aligned_cols=225 Identities=65% Similarity=1.104 Sum_probs=203.9
Q ss_pred cccccchHHHHHHHHHHHHHHHHhccCCcccccCCCCCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeC
Q 046721 38 AFGFASSVKAKRSMMRTAEKEQRRLHIPTIDRSYGEPPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSG 117 (1068)
Q Consensus 38 af~~~~~~~~~r~~rr~~~k~~kr~~v~~~~R~~~~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~ 117 (1068)
||+++++..+.|+.++++.++.||++++..+|.+...||.+|+|+|++|+|||||+|+|++...........+++++...
T Consensus 1 ~~~~~~~~~~~r~~~~~~~~~~k~~~~~~~~r~~~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i~i~~~ 80 (225)
T cd01882 1 AFAFSSAVAAARQFQRTADIEEKKLHVPVVDRTPEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTG 80 (225)
T ss_pred CcccccchHHHHHHHHHHHhhhccccceeeccccccCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccEEEEec
Confidence 79999999999999999999999999999999888899999999999999999999999987544444445566777666
Q ss_pred CCeeEEEEeCCCChhHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHH
Q 046721 118 KKRRLQFVECPNDINGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLK 197 (1068)
Q Consensus 118 ~k~rl~fIDtPGdl~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk 197 (1068)
.+.+++|+||||.+..+++.++.||+||||+|++.++..++..++..+..+|+|.+|+|+||+|++.+.+.+..+++.|+
T Consensus 81 ~~~~i~~vDtPg~~~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~ 160 (225)
T cd01882 81 KKRRLTFIECPNDINAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLK 160 (225)
T ss_pred CCceEEEEeCCchHHHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHH
Confidence 78999999999999889999999999999999999999999999999999999977789999999865555677888888
Q ss_pred HHhcccccCCCeEEEEecccCCcCCchhhcchHHHHHHhhcccccccccCCeEEEEeEEecCCCc
Q 046721 198 HRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWRTSHPYILVDRFEDVTPPE 262 (1068)
Q Consensus 198 ~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR~~rPylLadrved~~~~~ 262 (1068)
+++..++.++.+||++||++...|+.+++.+++|+|+.++++.+.||..|||||+++++++++|+
T Consensus 161 ~~~~~~~~~~~ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r~~r~y~~~~~~~~~~~~~ 225 (225)
T cd01882 161 HRFWTEVYQGAKLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWRNSHPYVLADRMEDITNPE 225 (225)
T ss_pred HHHHHhhCCCCcEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeeecCCCeEEEeeeecccCCC
Confidence 88877778899999999999999999999999999999999999999999999999999998763
No 6
>COG1159 Era GTPase [General function prediction only]
Probab=99.95 E-value=5e-27 Score=255.60 Aligned_cols=215 Identities=20% Similarity=0.261 Sum_probs=179.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc---cccCCCCceeccEE-EEeCCCeeEEEEeCCC------Chh-----HHHHHHHh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH---YTKLKVPEVRGPVT-VVSGKKRRLQFVECPN------DIN-----GMIDCAKF 140 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~---~~~~~~~tt~~~It-i~~~~k~rl~fIDtPG------dl~-----smld~akv 140 (1068)
...|||||.||||||||+|+|+|. .++..++||+..|+ +++....+++|+|||| .++ .+..+++.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~d 85 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKD 85 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhcc
Confidence 368999999999999999999997 47899999999988 7888899999999999 233 24456689
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC--
Q 046721 141 ADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ-- 218 (1068)
Q Consensus 141 ADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g-- 218 (1068)
||+||||+|+..++...+..+++.|+....| +|+++||+|.+++...+......+... .++..+|++||++|
T Consensus 86 vDlilfvvd~~~~~~~~d~~il~~lk~~~~p-vil~iNKID~~~~~~~l~~~~~~~~~~-----~~f~~ivpiSA~~g~n 159 (298)
T COG1159 86 VDLILFVVDADEGWGPGDEFILEQLKKTKTP-VILVVNKIDKVKPKTVLLKLIAFLKKL-----LPFKEIVPISALKGDN 159 (298)
T ss_pred CcEEEEEEeccccCCccHHHHHHHHhhcCCC-eEEEEEccccCCcHHHHHHHHHHHHhh-----CCcceEEEeeccccCC
Confidence 9999999999999999999999999987778 899999999998654344555544333 46779999999987
Q ss_pred ----------------CcCCchhhcchH-HHHHHhhccccccccc---CCeEEEEeEEecCCCccccccCCCCceEEEEE
Q 046721 219 ----------------GKYTKKDIGNLA-EFISVMKFHSLSWRTS---HPYILVDRFEDVTPPERVHVNNKCDRNVAIYG 278 (1068)
Q Consensus 219 ----------------~~y~~~ei~nLl-R~I~~~k~r~l~wR~~---rPylLadrved~~~~~~i~~~~~~~gtl~VtG 278 (1068)
|+|+++.+++.. ||+..+..|+..++.. -||.++..++.+... .++.+
T Consensus 160 ~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~--------~~~~~---- 227 (298)
T COG1159 160 VDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEER--------EKGLL---- 227 (298)
T ss_pred HHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEec--------CCCeE----
Confidence 789999999998 9999999998776544 499999999888542 25666
Q ss_pred EEEeeee--cCCcEEEEecCCCeeEEeeecCC
Q 046721 279 YLRGCNL--KKGTKVHIAGAGDYSLAGVTGLA 308 (1068)
Q Consensus 279 yVRG~~L--~~nqlVhIpG~GdfqIk~I~~~~ 308 (1068)
+|++.++ +.+|+.+|+|.||-+|++|+..+
T Consensus 228 ~I~a~I~Ver~sQK~IiIGk~G~~iK~IG~~A 259 (298)
T COG1159 228 KIHATIYVERESQKGIIIGKNGAMIKKIGTAA 259 (298)
T ss_pred EEEEEEEEecCCccceEECCCcHHHHHHHHHH
Confidence 5666666 99999999999999999998754
No 7
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.87 E-value=2.5e-21 Score=214.10 Aligned_cols=211 Identities=19% Similarity=0.166 Sum_probs=158.4
Q ss_pred EEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCC------hhH-----HHHHHHhcC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPND------ING-----MIDCAKFAD 142 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd------l~s-----mld~akvAD 142 (1068)
.|+|+|+||||||||+|+|++.. ++..++||+..+. +......+++|+||||- +.. +..++..||
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999974 4567778877665 44455678999999992 121 345678999
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC----
Q 046721 143 LALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ---- 218 (1068)
Q Consensus 143 lVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g---- 218 (1068)
++|||+|++.+.... ..++..+...+.| +|+|+||+|+... ..+......+.. .....++|++||++|
T Consensus 82 vvl~VvD~~~~~~~~-~~i~~~l~~~~~p-~ilV~NK~Dl~~~-~~~~~~~~~~~~-----~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 82 LILFVVDSDQWNGDG-EFVLTKLQNLKRP-VVLTRNKLDNKFK-DKLLPLIDKYAI-----LEDFKDIVPISALTGDNTS 153 (270)
T ss_pred EEEEEEECCCCCchH-HHHHHHHHhcCCC-EEEEEECeeCCCH-HHHHHHHHHHHh-----hcCCCceEEEecCCCCCHH
Confidence 999999998765543 5677778888888 8999999999753 333222222222 123458999999987
Q ss_pred --------------CcCCchhhcchH-HHHHHhhccccccc---ccCCeEEEEeEEecCCCccccccCCCCceEEEEEEE
Q 046721 219 --------------GKYTKKDIGNLA-EFISVMKFHSLSWR---TSHPYILVDRFEDVTPPERVHVNNKCDRNVAIYGYL 280 (1068)
Q Consensus 219 --------------~~y~~~ei~nLl-R~I~~~k~r~l~wR---~~rPylLadrved~~~~~~i~~~~~~~gtl~VtGyV 280 (1068)
|.|+.+.+++.. +++..+..|+..++ ...||.++..++.+... .++.+ +|
T Consensus 154 ~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~~--------~~~~~----~i 221 (270)
T TIGR00436 154 FLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSFN--------EKGLL----KI 221 (270)
T ss_pred HHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEEC--------CCCeE----EE
Confidence 668888888876 78888888876654 44599999999988531 12344 56
Q ss_pred Eeeee--cCCcEEEEecCCCeeEEeeecCC
Q 046721 281 RGCNL--KKGTKVHIAGAGDYSLAGVTGLA 308 (1068)
Q Consensus 281 RG~~L--~~nqlVhIpG~GdfqIk~I~~~~ 308 (1068)
+..++ +.+|+-+|.|.||-+|++|+..+
T Consensus 222 ~~~i~v~~~s~k~iiig~~g~~ik~i~~~a 251 (270)
T TIGR00436 222 HALISVERESQKKIIIGKNGSMIKAIGIAA 251 (270)
T ss_pred EEEEEECcCCceeEEEcCCcHHHHHHHHHH
Confidence 66666 99999999999999999998654
No 8
>smart00785 AARP2CN AARP2CN (NUC121) domain. This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU PUBMED:15112237.
Probab=99.87 E-value=3.9e-22 Score=181.85 Aligned_cols=83 Identities=48% Similarity=0.925 Sum_probs=77.0
Q ss_pred hhcchHHHHHHhhcccccccccCCeEEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCCCeeEEee
Q 046721 225 DIGNLAEFISVMKFHSLSWRTSHPYILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAGDYSLAGV 304 (1068)
Q Consensus 225 ei~nLlR~I~~~k~r~l~wR~~rPylLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~GdfqIk~I 304 (1068)
|+.||+|+|++++++++.||+.|||||+++++++++. .+++++++|+|||||||.+|++|++|||||.|||||++|
T Consensus 1 e~~nL~R~i~~~k~~~l~WR~~rpY~lad~~e~~~~~----~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I 76 (83)
T smart00785 1 EILNLLRFLSVMKPRPLSWRDQHPYMLADRVEDITDE----EDPKVDRTLVVYGYVRGTGLNANQLVHIPGLGDFQISKI 76 (83)
T ss_pred CHHHHHHHHHhccCCCCcccCCCCeEEEEEeEecCCC----CCCccCcEEEEEEEEcCCCCCCCCEEEeCCcCCeEeeEE
Confidence 4689999999999999999999999999999998762 345678899999999999999999999999999999999
Q ss_pred ecCCCCC
Q 046721 305 TGLADPC 311 (1068)
Q Consensus 305 ~~~~DP~ 311 (1068)
+.++|||
T Consensus 77 ~~~~dP~ 83 (83)
T smart00785 77 EALPDPC 83 (83)
T ss_pred eecCCCC
Confidence 9999998
No 9
>PRK15494 era GTPase Era; Provisional
Probab=99.86 E-value=3.8e-21 Score=219.39 Aligned_cols=214 Identities=23% Similarity=0.308 Sum_probs=164.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCC------hh-HH----HHHHH
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPND------IN-GM----IDCAK 139 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd------l~-sm----ld~ak 139 (1068)
....|+|||.+|||||||+|+|++.. ++..+++|+..+. ++...+.+++|+||||. +. .| ..++.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~ 130 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLH 130 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhh
Confidence 34689999999999999999999874 3456677766555 45556778999999993 22 12 33468
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC-
Q 046721 140 FADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ- 218 (1068)
Q Consensus 140 vADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g- 218 (1068)
.||++|||+|++.+++.....++..+...+.| +|+|+||+|+... .+..+.+.+.. ......+|++||++|
T Consensus 131 ~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p-~IlViNKiDl~~~--~~~~~~~~l~~-----~~~~~~i~~iSAktg~ 202 (339)
T PRK15494 131 SADLVLLIIDSLKSFDDITHNILDKLRSLNIV-PIFLLNKIDIESK--YLNDIKAFLTE-----NHPDSLLFPISALSGK 202 (339)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEEhhcCccc--cHHHHHHHHHh-----cCCCcEEEEEeccCcc
Confidence 99999999999988887777788888888888 5789999998642 23333333322 234578999999987
Q ss_pred -----------------CcCCchhhcchH-HHHHHhhcccccccccC---CeEEEEeEEecCCCccccccCCCCceEEEE
Q 046721 219 -----------------GKYTKKDIGNLA-EFISVMKFHSLSWRTSH---PYILVDRFEDVTPPERVHVNNKCDRNVAIY 277 (1068)
Q Consensus 219 -----------------~~y~~~ei~nLl-R~I~~~k~r~l~wR~~r---PylLadrved~~~~~~i~~~~~~~gtl~Vt 277 (1068)
|.|+++.+++.. |+++.+..|+..++..+ ||.++..++.+... .++.+
T Consensus 203 gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~--------~~~~~--- 271 (339)
T PRK15494 203 NIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDL--------KDKSV--- 271 (339)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEEEc--------CCCeE---
Confidence 789999999887 99999999887766544 99999999888531 12344
Q ss_pred EEEEeeee--cCCcEEEEecCCCeeEEeeecCC
Q 046721 278 GYLRGCNL--KKGTKVHIAGAGDYSLAGVTGLA 308 (1068)
Q Consensus 278 GyVRG~~L--~~nqlVhIpG~GdfqIk~I~~~~ 308 (1068)
+|++.++ +.+|+-+|+|.||-.|++|+..+
T Consensus 272 -~i~~~i~v~~~sqk~iiiG~~g~~ik~i~~~a 303 (339)
T PRK15494 272 -KINQVIVVSRESYKTIILGKNGSKIKEIGAKS 303 (339)
T ss_pred -EEEEEEEECCCCceeEEEcCCcHHHHHHHHHH
Confidence 4666655 99999999999999999998754
No 10
>PF08142 AARP2CN: AARP2CN (NUC121) domain; InterPro: IPR012948 This domain is the central domain of AARP2 (asparagine and aspartate rich protein 2). It is weakly similar to the GTP-binding domain of elongation factor TU []. PfAARP2 is an antigen from Plasmodium falciparum of 150 kDa, which is encoded by a unique gene on chromosome 1 []. The central region of Pfaarp2 contains blocks of repetitions encoding asparagine and aspartate residues. ; GO: 0042254 ribosome biogenesis, 0005634 nucleus
Probab=99.86 E-value=7.4e-22 Score=181.05 Aligned_cols=85 Identities=45% Similarity=0.809 Sum_probs=77.3
Q ss_pred hhcchHHHHHHhhcccccccccCCeEEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCCCeeEEee
Q 046721 225 DIGNLAEFISVMKFHSLSWRTSHPYILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAGDYSLAGV 304 (1068)
Q Consensus 225 ei~nLlR~I~~~k~r~l~wR~~rPylLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~GdfqIk~I 304 (1068)
|+.||+|+|++++++++.||+.|||||++++++.++++....+ .+++|+|||||||.+|++|++|||||+|||||++|
T Consensus 1 e~~nl~R~i~~~k~~~i~WR~~r~y~lad~~e~~~~~~~~~~~--~~~~l~v~GyvRG~~l~~n~lVHIpG~GDFqi~~I 78 (85)
T PF08142_consen 1 EILNLLRFISVQKPRPISWRDQRPYMLADRVEFVPDPEDESEN--EDGTLKVYGYVRGSPLSVNQLVHIPGVGDFQISKI 78 (85)
T ss_pred CHHHHHHHHHhCccCCCccccCCCeEEEEEEEecCCccccccC--CceEEEEEEEEccccccCCCEEEeCCcCCeEeeEe
Confidence 5689999999999999999999999999999999876543222 25799999999999999999999999999999999
Q ss_pred ecCCCCC
Q 046721 305 TGLADPC 311 (1068)
Q Consensus 305 ~~~~DP~ 311 (1068)
+.++|||
T Consensus 79 ~~~~DPc 85 (85)
T PF08142_consen 79 ESLPDPC 85 (85)
T ss_pred eecCCCC
Confidence 9999998
No 11
>PRK00089 era GTPase Era; Reviewed
Probab=99.86 E-value=1.1e-20 Score=210.90 Aligned_cols=213 Identities=23% Similarity=0.296 Sum_probs=162.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCC------hh-----HHHHHHHh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPND------IN-----GMIDCAKF 140 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd------l~-----smld~akv 140 (1068)
-.+|+|+|+||||||||+|+|++.. ++..+++++..+. +......+++|+||||- +. .+..++..
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~ 84 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD 84 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999974 4556667666555 44445679999999992 11 23456788
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC--
Q 046721 141 ADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ-- 218 (1068)
Q Consensus 141 ADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g-- 218 (1068)
||++|||+|++.++......++..+...+.| +++|+||+|+..+...+....+.+.+. .+...+|++||+++
T Consensus 85 ~D~il~vvd~~~~~~~~~~~i~~~l~~~~~p-vilVlNKiDl~~~~~~l~~~~~~l~~~-----~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 85 VDLVLFVVDADEKIGPGDEFILEKLKKVKTP-VILVLNKIDLVKDKEELLPLLEELSEL-----MDFAEIVPISALKGDN 158 (292)
T ss_pred CCEEEEEEeCCCCCChhHHHHHHHHhhcCCC-EEEEEECCcCCCCHHHHHHHHHHHHhh-----CCCCeEEEecCCCCCC
Confidence 9999999999988877777888888877888 889999999985445555555555433 24678999999976
Q ss_pred ----------------CcCCchhhcchH-HHHHHhhcccccccc---cCCeEEEEeEEecCCCccccccCCCCceEEEEE
Q 046721 219 ----------------GKYTKKDIGNLA-EFISVMKFHSLSWRT---SHPYILVDRFEDVTPPERVHVNNKCDRNVAIYG 278 (1068)
Q Consensus 219 ----------------~~y~~~ei~nLl-R~I~~~k~r~l~wR~---~rPylLadrved~~~~~~i~~~~~~~gtl~VtG 278 (1068)
|.|+.+.+++.. |++..+..|+..+.. .-||.++..++.+.. .+.+
T Consensus 159 v~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~----------~~~~---- 224 (292)
T PRK00089 159 VDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFEE----------RGLV---- 224 (292)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEEE----------CCeE----
Confidence 567777666665 777777777665543 449999999998842 1344
Q ss_pred EEEeeee--cCCcEEEEecCCCeeEEeeecCC
Q 046721 279 YLRGCNL--KKGTKVHIAGAGDYSLAGVTGLA 308 (1068)
Q Consensus 279 yVRG~~L--~~nqlVhIpG~GdfqIk~I~~~~ 308 (1068)
+|++.++ +.+|+-+|.|.||-.|++|+..+
T Consensus 225 ~i~~~i~v~~~~~k~i~ig~~g~~i~~i~~~a 256 (292)
T PRK00089 225 RIEATIYVERDSQKGIIIGKGGAMLKKIGTEA 256 (292)
T ss_pred EEEEEEEEccCCceeEEEeCCcHHHHHHHHHH
Confidence 4666656 99999999999999999998654
No 12
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.83 E-value=6.6e-20 Score=198.56 Aligned_cols=224 Identities=23% Similarity=0.284 Sum_probs=166.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCCh---------------hHH
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPNDI---------------NGM 134 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGdl---------------~sm 134 (1068)
..-..|||||.||||||||.|.++++. ++.+++||+..++ +.+.+..+++|+||||-+ ...
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 445789999999999999999999984 6789999998888 777788999999999921 135
Q ss_pred HHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhC-CCCcEEEEEeCCCcCCcHHHHHHHHHHH------------HHHhc
Q 046721 135 IDCAKFADLALLLIDASHGFEMETFEFLNLMQNH-GLPNVMGVLTHLDKFTDKKKLRKTKQHL------------KHRFG 201 (1068)
Q Consensus 135 ld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~-GlP~vIvVLNKiDlvk~~k~l~~vkk~L------------k~~~~ 201 (1068)
.+++..||+|++|+|++..-..-.-.+|.+|... .+| -|+|+||+|..+....+...+..| ++.|.
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ip-s~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~ 228 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIP-SILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFT 228 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCC-ceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhc
Confidence 6778999999999999863333344678888775 577 588999999987544333333222 22221
Q ss_pred c-----------cccCCCeEEEEecccC------------------CcCCchhhcchH-HHHHHhhccccccc---ccCC
Q 046721 202 T-----------ELYHGAKLFKLSGLIQ------------------GKYTKKDIGNLA-EFISVMKFHSLSWR---TSHP 248 (1068)
Q Consensus 202 ~-----------e~~~~~kVf~ISAl~g------------------~~y~~~ei~nLl-R~I~~~k~r~l~wR---~~rP 248 (1068)
. .|..+..||++||++| |.|+..-.+.-. ++||....|...+. ...|
T Consensus 229 ~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd~~pqEVP 308 (379)
T KOG1423|consen 229 DVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLDHLPQEVP 308 (379)
T ss_pred cCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHHHHHhhCccccC
Confidence 0 1334677999999987 778776665554 88888888776544 4459
Q ss_pred eEEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCCCeeEEeeecCC
Q 046721 249 YILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAGDYSLAGVTGLA 308 (1068)
Q Consensus 249 ylLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~GdfqIk~I~~~~ 308 (1068)
|-+..++.+|.. ...|.+.+.+.|+.. +..+...|+|.||-.|++|+..+
T Consensus 309 Y~lq~~i~~w~e--------~~~g~l~I~~~v~~p--K~s~~klliGkgG~ki~qI~~~a 358 (379)
T KOG1423|consen 309 YNLQVRILSWKE--------RPAGVLFIQVEVVCP--KNSQKKLLIGKGGKKISQIGTRA 358 (379)
T ss_pred cceEEEEEEeee--------cCCcEEEEEEEEEcC--CCcceeEEEcCCCccHHHHHHHH
Confidence 999999988853 125677555555433 78899999999999999998643
No 13
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.83 E-value=5.7e-19 Score=214.96 Aligned_cols=218 Identities=19% Similarity=0.266 Sum_probs=163.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEe-------CCCeeEEEEeCCC--Ch-hHHHHHHHhcCEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVS-------GKKRRLQFVECPN--DI-NGMIDCAKFADLALL 146 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~-------~~k~rl~fIDtPG--dl-~smld~akvADlVLl 146 (1068)
.+|+++|++++|||||+++|++..+.....+...++|+-. ..+..+.|||||| +| ..|+..+..+|++||
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 3799999999999999999998654333333334455321 2356799999999 44 458999999999999
Q ss_pred EEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhh
Q 046721 147 LIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDI 226 (1068)
Q Consensus 147 VIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei 226 (1068)
|||++.++..++.+++.++...|+|.+|+|+||+|++. ...+..+...++..+........++|++||++| ..+
T Consensus 81 VVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~-~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG-----~gI 154 (614)
T PRK10512 81 VVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVD-EARIAEVRRQVKAVLREYGFAEAKLFVTAATEG-----RGI 154 (614)
T ss_pred EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCC-HHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCC-----CCC
Confidence 99999999999999999999999998889999999985 344555666666665444445678999999965 567
Q ss_pred cchHHHHHHhhcccccccccCCeEEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCC-CeeEEeee
Q 046721 227 GNLAEFISVMKFHSLSWRTSHPYILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAG-DYSLAGVT 305 (1068)
Q Consensus 227 ~nLlR~I~~~k~r~l~wR~~rPylLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~G-dfqIk~I~ 305 (1068)
..|...|.... .+..+.+..+.+.++++..++ +.|+ +|+|.|..+.+++|+.+.|.+.| ..+|++|.
T Consensus 155 ~~L~~~L~~~~-~~~~~~~~~~rl~Id~vf~v~----------G~Gt-VvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq 222 (614)
T PRK10512 155 DALREHLLQLP-EREHAAQHRFRLAIDRAFTVK----------GAGL-VVTGTALSGEVKVGDTLWLTGVNKPMRVRGLH 222 (614)
T ss_pred HHHHHHHHHhh-ccccCcCCCceEEEEEEeccC----------CCeE-EEEEEEecceEecCCEEEEcCCCCcEEEEEEe
Confidence 77777776543 333333333447777776652 3565 59999999999999999886654 57899998
Q ss_pred cCCCCCC
Q 046721 306 GLADPCP 312 (1068)
Q Consensus 306 ~~~DP~p 312 (1068)
....|+.
T Consensus 223 ~~~~~v~ 229 (614)
T PRK10512 223 AQNQPTE 229 (614)
T ss_pred cCCcCCC
Confidence 7765543
No 14
>CHL00071 tufA elongation factor Tu
Probab=99.82 E-value=1.2e-18 Score=203.83 Aligned_cols=225 Identities=20% Similarity=0.260 Sum_probs=157.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccc-------------cCCCCceeccEEEE------eCCCeeEEEEeCCC--Ch
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYT-------------KLKVPEVRGPVTVV------SGKKRRLQFVECPN--DI 131 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~-------------~~~~~tt~~~Iti~------~~~k~rl~fIDtPG--dl 131 (1068)
..+.+.|+|+|++|+|||||+++|++... .....+...++|+- ...+.+++|+|||| ++
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 45678899999999999999999997521 01111112344432 23567899999999 34
Q ss_pred h-HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccC--CC
Q 046721 132 N-GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYH--GA 208 (1068)
Q Consensus 132 ~-smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~--~~ 208 (1068)
. .|+.++..||++|||||+..++..++.+++..+...|+|.+|+|+||+|++........+.+.+..++....++ ..
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 168 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDI 168 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence 3 48888999999999999999999999999999999999988899999999864443444555666665433222 47
Q ss_pred eEEEEecccCCcCCc-------------hhhcchHHHHHHhhcccccccccCCe-EEEEeEEecCCCccccccCCCCceE
Q 046721 209 KLFKLSGLIQGKYTK-------------KDIGNLAEFISVMKFHSLSWRTSHPY-ILVDRFEDVTPPERVHVNNKCDRNV 274 (1068)
Q Consensus 209 kVf~ISAl~g~~y~~-------------~ei~nLlR~I~~~k~r~l~wR~~rPy-lLadrved~~~~~~i~~~~~~~gtl 274 (1068)
+++++||++|+.... +.+..|+..|....+.+.... ..|+ +.++++..++ ..|+
T Consensus 169 ~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~-~~p~r~~I~~v~~~~----------g~G~- 236 (409)
T CHL00071 169 PIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDT-DKPFLMAIEDVFSIT----------GRGT- 236 (409)
T ss_pred eEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCC-CCCEEEEEEEEEEeC----------CCeE-
Confidence 899999998852210 023456666655444343222 2454 5566665542 2455
Q ss_pred EEEEEEEeeeecCCcEEEEecC---CCeeEEeeecCCC
Q 046721 275 AIYGYLRGCNLKKGTKVHIAGA---GDYSLAGVTGLAD 309 (1068)
Q Consensus 275 ~VtGyVRG~~L~~nqlVhIpG~---GdfqIk~I~~~~D 309 (1068)
+++|.|..+.+++|+.|.|.+. ...+|++|.....
T Consensus 237 Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~ 274 (409)
T CHL00071 237 VATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQK 274 (409)
T ss_pred EEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCc
Confidence 4999999999999999987543 2357888886543
No 15
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.82 E-value=7e-19 Score=207.19 Aligned_cols=229 Identities=21% Similarity=0.206 Sum_probs=163.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEe---------------------C--------------
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVS---------------------G-------------- 117 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~---------------------~-------------- 117 (1068)
..|..+|+++||.++|||||+.+|++..+....++...++|+.. .
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 46789999999999999999999998654333333333333110 0
Q ss_pred ----CCeeEEEEeCCC--Chh-HHHHHHHhcCEEEEEEeCCCC-CchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHH
Q 046721 118 ----KKRRLQFVECPN--DIN-GMIDCAKFADLALLLIDASHG-FEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKL 189 (1068)
Q Consensus 118 ----~k~rl~fIDtPG--dl~-smld~akvADlVLlVIDas~g-~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l 189 (1068)
.+++++|||||| +|. .|+.++..+|++||||||..+ ...++.+++.++...|++++|+|+||+|++. ...+
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~-~~~~ 189 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVK-EAQA 189 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccC-HHHH
Confidence 025799999999 343 589999999999999999986 6888999999999999998999999999985 3445
Q ss_pred HHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchHHHHHHhhcccccccccCCeEEEEeEEecCCCccccccCC
Q 046721 190 RKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWRTSHPYILVDRFEDVTPPERVHVNNK 269 (1068)
Q Consensus 190 ~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR~~rPylLadrved~~~~~~i~~~~~ 269 (1068)
......++.++...+....++|++||++| ..+..|+..|....+.+....+..+.+.+++.+++..+... ..+
T Consensus 190 ~~~~~ei~~~l~~~~~~~~~iipVSA~~G-----~nI~~Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~--~~~ 262 (460)
T PTZ00327 190 QDQYEEIRNFVKGTIADNAPIIPISAQLK-----YNIDVVLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGED--IEN 262 (460)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEeeCCCC-----CCHHHHHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCc--ccC
Confidence 55566666655444556889999999966 56777888887555544322233344667777776432110 011
Q ss_pred CCceEEEEEEEEeeeecCCcEEEEecCC-------C-------eeEEeeecCCCC
Q 046721 270 CDRNVAIYGYLRGCNLKKGTKVHIAGAG-------D-------YSLAGVTGLADP 310 (1068)
Q Consensus 270 ~~gtl~VtGyVRG~~L~~nqlVhIpG~G-------d-------fqIk~I~~~~DP 310 (1068)
..|+ +|+|.|..+.+++|+.|.|...| . .+|++|.....|
T Consensus 263 ~~Gt-Vv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~ 316 (460)
T PTZ00327 263 LKGG-VAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNE 316 (460)
T ss_pred CceE-EEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEECCeE
Confidence 2344 58999999999999999875432 2 368888765443
No 16
>PRK12735 elongation factor Tu; Reviewed
Probab=99.81 E-value=1.7e-18 Score=201.57 Aligned_cols=227 Identities=19% Similarity=0.238 Sum_probs=156.6
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhccc-------------cCCCCceeccEEE------EeCCCeeEEEEeCCC--C
Q 046721 72 GEPPPYVVVVQGPPQVGKSLLIKCLIKHYT-------------KLKVPEVRGPVTV------VSGKKRRLQFVECPN--D 130 (1068)
Q Consensus 72 ~~~pP~~VaVVG~pnvGKSTLIn~L~~~~~-------------~~~~~tt~~~Iti------~~~~k~rl~fIDtPG--d 130 (1068)
...|..+|+|+|++|+|||||+++|++... .....+...++|+ +...+.+++|+|||| +
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 346678899999999999999999997310 0111112234443 223467899999999 3
Q ss_pred hh-HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccccc--CC
Q 046721 131 IN-GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELY--HG 207 (1068)
Q Consensus 131 l~-smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~--~~ 207 (1068)
+. .|+.++..+|++|||+|+..++..++.+++..+...|+|.+|+|+||+|++.+.+.+..+...++..+....+ ..
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~ 167 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDD 167 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCc
Confidence 43 4888889999999999999999999999999999999997667899999985333334444455555533222 24
Q ss_pred CeEEEEecccCCcC-----CchhhcchHHHHHHhhcccccccccCCe-EEEEeEEecCCCccccccCCCCceEEEEEEEE
Q 046721 208 AKLFKLSGLIQGKY-----TKKDIGNLAEFISVMKFHSLSWRTSHPY-ILVDRFEDVTPPERVHVNNKCDRNVAIYGYLR 281 (1068)
Q Consensus 208 ~kVf~ISAl~g~~y-----~~~ei~nLlR~I~~~k~r~l~wR~~rPy-lLadrved~~~~~~i~~~~~~~gtl~VtGyVR 281 (1068)
.+++++||++++.. ....+..|+..|....+.+.... ..|+ +.++++..++ ..|+ +++|.|.
T Consensus 168 ~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~-~~p~r~~I~~~f~v~----------g~Gt-vv~G~v~ 235 (396)
T PRK12735 168 TPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAI-DKPFLMPIEDVFSIS----------GRGT-VVTGRVE 235 (396)
T ss_pred eeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccC-CCCeEEEEEEEEecC----------CceE-EEEEEEE
Confidence 78999999987321 11245667777766555443322 3455 4555555442 2455 5999999
Q ss_pred eeeecCCcEEEEecCC---CeeEEeeecCCCC
Q 046721 282 GCNLKKGTKVHIAGAG---DYSLAGVTGLADP 310 (1068)
Q Consensus 282 G~~L~~nqlVhIpG~G---dfqIk~I~~~~DP 310 (1068)
.+.+++|+.+.|.+.+ ..+|++|+....|
T Consensus 236 ~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~ 267 (396)
T PRK12735 236 RGIVKVGDEVEIVGIKETQKTTVTGVEMFRKL 267 (396)
T ss_pred ecEEeCCCEEEEecCCCCeEEEEEEEEECCeE
Confidence 9999999999876553 4578888865433
No 17
>PRK12736 elongation factor Tu; Reviewed
Probab=99.81 E-value=2.4e-18 Score=200.26 Aligned_cols=223 Identities=21% Similarity=0.259 Sum_probs=154.9
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccc-------------cCCCCceeccEEE------EeCCCeeEEEEeCCC--Ch
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYT-------------KLKVPEVRGPVTV------VSGKKRRLQFVECPN--DI 131 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~-------------~~~~~tt~~~Iti------~~~~k~rl~fIDtPG--dl 131 (1068)
..+.++|+|+|++++|||||+++|++... .....+...++|+ +...+.+++|||||| ++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 35678999999999999999999987311 0011111233442 123467899999999 34
Q ss_pred h-HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccccc--CCC
Q 046721 132 N-GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELY--HGA 208 (1068)
Q Consensus 132 ~-smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~--~~~ 208 (1068)
. .|+..+..||++|||+|++.|+..++.+++..+...|+|.+|+|+||+|++.+.+....+.+.++..+....+ ...
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 168 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDI 168 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCc
Confidence 3 4888899999999999999999999999999999999998788999999985333333344455555433222 357
Q ss_pred eEEEEecccCC-----cCCchhhcchHHHHHHhhcccccccccCCe-EEEEeEEecCCCccccccCCCCceEEEEEEEEe
Q 046721 209 KLFKLSGLIQG-----KYTKKDIGNLAEFISVMKFHSLSWRTSHPY-ILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRG 282 (1068)
Q Consensus 209 kVf~ISAl~g~-----~y~~~ei~nLlR~I~~~k~r~l~wR~~rPy-lLadrved~~~~~~i~~~~~~~gtl~VtGyVRG 282 (1068)
+++++||+++. +| ..+..|+..|....+.+... ...|+ +.++++..++ ..|+ +++|.|..
T Consensus 169 ~ii~vSa~~g~~~~~~~~--~~i~~Ll~~l~~~lp~~~~~-~~~p~r~~I~~~~~~~----------g~G~-Vv~G~v~~ 234 (394)
T PRK12736 169 PVIRGSALKALEGDPKWE--DAIMELMDAVDEYIPTPERD-TDKPFLMPVEDVFTIT----------GRGT-VVTGRVER 234 (394)
T ss_pred cEEEeeccccccCCCcch--hhHHHHHHHHHHhCCCCCCC-CCCCeEEEEEEEEecC----------CcEE-EEEEEEee
Confidence 89999999861 11 23456666666555544322 23455 5566665542 2455 49999999
Q ss_pred eeecCCcEEEEecCC---CeeEEeeecCCC
Q 046721 283 CNLKKGTKVHIAGAG---DYSLAGVTGLAD 309 (1068)
Q Consensus 283 ~~L~~nqlVhIpG~G---dfqIk~I~~~~D 309 (1068)
+.++.|+.+.|.+.+ ...|++|.....
T Consensus 235 G~l~~gd~v~i~p~~~~~~~~V~sI~~~~~ 264 (394)
T PRK12736 235 GTVKVGDEVEIVGIKETQKTVVTGVEMFRK 264 (394)
T ss_pred cEEecCCEEEEecCCCCeEEEEEEEEECCE
Confidence 999999999876553 357888886543
No 18
>PLN03126 Elongation factor Tu; Provisional
Probab=99.80 E-value=5.6e-18 Score=200.77 Aligned_cols=225 Identities=20% Similarity=0.237 Sum_probs=156.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc-------------cCCCCceeccEEE------EeCCCeeEEEEeCCC--Chh
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT-------------KLKVPEVRGPVTV------VSGKKRRLQFVECPN--DIN 132 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~-------------~~~~~tt~~~Iti------~~~~k~rl~fIDtPG--dl~ 132 (1068)
.|.++|+++|++++|||||+++|+.... .....+....+|+ +...+.+++|||||| ++.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 4568899999999999999999996310 0011112233443 224577999999999 443
Q ss_pred -HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccccc--CCCe
Q 046721 133 -GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELY--HGAK 209 (1068)
Q Consensus 133 -smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~--~~~k 209 (1068)
.|+.++..+|++|||||+..|+..++.+++..+...|+|++|+|+||+|++.+......+.+.++.++....+ ...+
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~ 238 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIP 238 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcce
Confidence 5899999999999999999999999999999999999998889999999986433344455566666544322 3678
Q ss_pred EEEEecccCCcCC--------c-----hhhcchHHHHHHhhcccccccccCCeEEEEeEEecCCCccccccCCCCceEEE
Q 046721 210 LFKLSGLIQGKYT--------K-----KDIGNLAEFISVMKFHSLSWRTSHPYILVDRFEDVTPPERVHVNNKCDRNVAI 276 (1068)
Q Consensus 210 Vf~ISAl~g~~y~--------~-----~ei~nLlR~I~~~k~r~l~wR~~rPylLadrved~~~~~~i~~~~~~~gtl~V 276 (1068)
++++||++++... . ..+..|+..|....+.+....+....+.++++..++ ..|+ +|
T Consensus 239 ~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~----------g~Gt-Vv 307 (478)
T PLN03126 239 IISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSIT----------GRGT-VA 307 (478)
T ss_pred EEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeC----------CceE-EE
Confidence 9999999873210 0 013456666655433333322222335566665542 2355 58
Q ss_pred EEEEEeeeecCCcEEEEecCCC---eeEEeeecCCC
Q 046721 277 YGYLRGCNLKKGTKVHIAGAGD---YSLAGVTGLAD 309 (1068)
Q Consensus 277 tGyVRG~~L~~nqlVhIpG~Gd---fqIk~I~~~~D 309 (1068)
+|.|..+.+++|+.|.|...|. .+|++|.....
T Consensus 308 ~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~ 343 (478)
T PLN03126 308 TGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQK 343 (478)
T ss_pred EEEEEcCeEecCCEEEEecCCCceEEEEEEEEECCe
Confidence 9999999999999999876664 46888876543
No 19
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.80 E-value=4.9e-18 Score=206.11 Aligned_cols=219 Identities=21% Similarity=0.313 Sum_probs=155.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEE------EeCCCeeEEEEeCCCC--hh-HHHHHHHhcCEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTV------VSGKKRRLQFVECPND--IN-GMIDCAKFADLALLL 147 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti------~~~~k~rl~fIDtPGd--l~-smld~akvADlVLlV 147 (1068)
.+|+++|++|||||||+++|++..+.....+...++|+ +...+..++||||||. +. .|+..+..+|++|||
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 37999999999999999999986433333232333432 2234578999999993 43 488889999999999
Q ss_pred EeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccccc-CCCeEEEEecccCCcCCchhh
Q 046721 148 IDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELY-HGAKLFKLSGLIQGKYTKKDI 226 (1068)
Q Consensus 148 IDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~-~~~kVf~ISAl~g~~y~~~ei 226 (1068)
+|++.|+..++.+++.++...|+|++|+|+||+|++.. ..+..+.+.++..+....+ ...++|++||++| .++
T Consensus 81 VDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~-~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG-----~GI 154 (581)
T TIGR00475 81 VDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNE-EEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG-----QGI 154 (581)
T ss_pred EECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCH-HHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC-----CCc
Confidence 99999999999999999999999989999999999863 3344445555555443322 3689999999976 445
Q ss_pred cchHHHHHHhhcccccccccCCe-EEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCC-CeeEEee
Q 046721 227 GNLAEFISVMKFHSLSWRTSHPY-ILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAG-DYSLAGV 304 (1068)
Q Consensus 227 ~nLlR~I~~~k~r~l~wR~~rPy-lLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~G-dfqIk~I 304 (1068)
..+...|..........+...|+ +.++++..++ +.|+ +|+|.|..+.+++|+.+.|...| ..+|++|
T Consensus 155 ~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~----------G~Gt-Vv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~i 223 (581)
T TIGR00475 155 GELKKELKNLLESLDIKRIQKPLRMAIDRAFKVK----------GAGT-VVTGTAFSGEVKVGDNLRLLPINHEVRVKAI 223 (581)
T ss_pred hhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecC----------CcEE-EEEEEEecceEecCCEEEECCCCceEEEeEE
Confidence 55555553332221111223444 6677776652 2455 59999999999999998765444 6789999
Q ss_pred ecCCCCCC
Q 046721 305 TGLADPCP 312 (1068)
Q Consensus 305 ~~~~DP~p 312 (1068)
.....+++
T Consensus 224 q~~~~~v~ 231 (581)
T TIGR00475 224 QAQNQDVE 231 (581)
T ss_pred EECCccCC
Confidence 88766553
No 20
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.80 E-value=4.7e-18 Score=197.87 Aligned_cols=225 Identities=19% Similarity=0.247 Sum_probs=152.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhcc-------------ccCCCCceeccEEE------EeCCCeeEEEEeCCC--Ch
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHY-------------TKLKVPEVRGPVTV------VSGKKRRLQFVECPN--DI 131 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~-------------~~~~~~tt~~~Iti------~~~~k~rl~fIDtPG--dl 131 (1068)
..+.++|+|+|++++|||||+++|++.. ......+...++|+ ....+.+++|||||| ++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 3456889999999999999999998531 00111111223332 123467899999999 44
Q ss_pred h-HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccC--CC
Q 046721 132 N-GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYH--GA 208 (1068)
Q Consensus 132 ~-smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~--~~ 208 (1068)
. .|+..+..+|++|||+|+..|+..++.+++..+...|+|.+|+|+||+|++.+......+.+.++..+....+. ..
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 168 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDT 168 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCc
Confidence 3 58888899999999999999999999999999999999977789999999864333333444555555333222 37
Q ss_pred eEEEEecccCCc-CC--chhhcchHHHHHHhhcccccccccCCe-EEEEeEEecCCCccccccCCCCceEEEEEEEEeee
Q 046721 209 KLFKLSGLIQGK-YT--KKDIGNLAEFISVMKFHSLSWRTSHPY-ILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCN 284 (1068)
Q Consensus 209 kVf~ISAl~g~~-y~--~~ei~nLlR~I~~~k~r~l~wR~~rPy-lLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~ 284 (1068)
+++++||+++.. .. ...+..|+..|....+.+..+. ..|+ +.++++..++ ..|+ +++|.|..+.
T Consensus 169 ~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~-~~p~r~~V~~vf~~~----------g~G~-Vv~G~v~~G~ 236 (394)
T TIGR00485 169 PIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERET-DKPFLMPIEDVFSIT----------GRGT-VVTGRVERGI 236 (394)
T ss_pred cEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCC-CCCeEEEEEEEEeeC----------CceE-EEEEEEEeeE
Confidence 899999997621 00 0123445555544444333332 2455 5566665442 2455 5999999999
Q ss_pred ecCCcEEEEecC---CCeeEEeeecCCC
Q 046721 285 LKKGTKVHIAGA---GDYSLAGVTGLAD 309 (1068)
Q Consensus 285 L~~nqlVhIpG~---GdfqIk~I~~~~D 309 (1068)
+++|+.|.|.+. ....|++|.....
T Consensus 237 l~~gd~v~i~p~~~~~~~~VksI~~~~~ 264 (394)
T TIGR00485 237 VKVGEEVEIVGLKDTRKTTVTGVEMFRK 264 (394)
T ss_pred EeCCCEEEEecCCCCcEEEEEEEEECCe
Confidence 999999987553 3567888887543
No 21
>PLN03127 Elongation factor Tu; Provisional
Probab=99.80 E-value=6.4e-18 Score=199.16 Aligned_cols=225 Identities=20% Similarity=0.270 Sum_probs=153.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhcc-------------ccCCCCceeccEEE------EeCCCeeEEEEeCCC--Ch
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHY-------------TKLKVPEVRGPVTV------VSGKKRRLQFVECPN--DI 131 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~-------------~~~~~~tt~~~Iti------~~~~k~rl~fIDtPG--dl 131 (1068)
..+.++|+++|++|+|||||+++|++.. ......+...++|+ +...+.+++|+|||| ++
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 4567889999999999999999998431 00111111233442 224567999999999 34
Q ss_pred -hHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccccc--CCC
Q 046721 132 -NGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELY--HGA 208 (1068)
Q Consensus 132 -~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~--~~~ 208 (1068)
..|+..+..||++|||||+..++..++.+++..+...|+|.+|+|+||+|++.+......+.+.++..+....+ ...
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~v 217 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEI 217 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence 45888888999999999999999999999999999999997788999999986333333344455555432112 346
Q ss_pred eEEEEecccCC-----cCCchhhcchHHHHHHhhcccccccccCCe-EEEEeEEecCCCccccccCCCCceEEEEEEEEe
Q 046721 209 KLFKLSGLIQG-----KYTKKDIGNLAEFISVMKFHSLSWRTSHPY-ILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRG 282 (1068)
Q Consensus 209 kVf~ISAl~g~-----~y~~~ei~nLlR~I~~~k~r~l~wR~~rPy-lLadrved~~~~~~i~~~~~~~gtl~VtGyVRG 282 (1068)
+++++||+.+. .+....+..|+..|....+.+..+.+ .|+ +.++++..++ +.|+ +|+|.|..
T Consensus 218 piip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~~-~pfr~~I~~vf~v~----------g~Gt-VvtG~v~~ 285 (447)
T PLN03127 218 PIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVLD-KPFLMPIEDVFSIQ----------GRGT-VATGRVEQ 285 (447)
T ss_pred eEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcccc-cceEeeEEEEEEcC----------CceE-EEEEEEEc
Confidence 88999987531 11223356677777666554443322 355 4555655442 2455 59999999
Q ss_pred eeecCCcEEEEecCC-----CeeEEeeecCCC
Q 046721 283 CNLKKGTKVHIAGAG-----DYSLAGVTGLAD 309 (1068)
Q Consensus 283 ~~L~~nqlVhIpG~G-----dfqIk~I~~~~D 309 (1068)
+.+++|+.|.|.|.+ ..+|++|+....
T Consensus 286 G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~ 317 (447)
T PLN03127 286 GTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKK 317 (447)
T ss_pred cEEecCCEEEEcccCCCCcEEEEEEEEEEECc
Confidence 999999999876532 357888876543
No 22
>PRK00049 elongation factor Tu; Reviewed
Probab=99.79 E-value=1.5e-17 Score=193.72 Aligned_cols=225 Identities=21% Similarity=0.268 Sum_probs=155.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhcccc-------------CCCCceeccEEEE------eCCCeeEEEEeCCC--Ch
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYTK-------------LKVPEVRGPVTVV------SGKKRRLQFVECPN--DI 131 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~-------------~~~~tt~~~Iti~------~~~k~rl~fIDtPG--dl 131 (1068)
..+.++|+|+|++++|||||+++|++.... ....+...++|+- ...+.+++|+|||| +|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 345678999999999999999999974210 0111112334421 23467899999999 44
Q ss_pred h-HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccccc--CCC
Q 046721 132 N-GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELY--HGA 208 (1068)
Q Consensus 132 ~-smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~--~~~ 208 (1068)
. .++.++..||++|||+|+..|+..++.+++..+...|+|.+|+|+||+|++.....+..+.+.+..++....+ ...
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 168 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDT 168 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCC
Confidence 3 4788889999999999999999999999999999999996567899999986333344455566666543222 457
Q ss_pred eEEEEecccCCcCC-----chhhcchHHHHHHhhcccccccccCCe-EEEEeEEecCCCccccccCCCCceEEEEEEEEe
Q 046721 209 KLFKLSGLIQGKYT-----KKDIGNLAEFISVMKFHSLSWRTSHPY-ILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRG 282 (1068)
Q Consensus 209 kVf~ISAl~g~~y~-----~~ei~nLlR~I~~~k~r~l~wR~~rPy-lLadrved~~~~~~i~~~~~~~gtl~VtGyVRG 282 (1068)
+++++||+++...+ -..+..|+..|....+.+... ...|+ +.++++..++ ..|+ +++|.|..
T Consensus 169 ~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~-~~~p~r~~I~~~f~v~----------g~G~-Vv~G~v~~ 236 (396)
T PRK00049 169 PIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERA-IDKPFLMPIEDVFSIS----------GRGT-VVTGRVER 236 (396)
T ss_pred cEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCC-CCCCeEEEEEEEEeeC----------CceE-EEEEEEee
Confidence 89999999863210 013456667776654433322 23455 4455555442 2455 58999999
Q ss_pred eeecCCcEEEEecC---CCeeEEeeecCCC
Q 046721 283 CNLKKGTKVHIAGA---GDYSLAGVTGLAD 309 (1068)
Q Consensus 283 ~~L~~nqlVhIpG~---GdfqIk~I~~~~D 309 (1068)
+.+++|+.+.|.+. -..+|++|+....
T Consensus 237 G~i~~gd~v~i~p~~~~~~~~VksI~~~~~ 266 (396)
T PRK00049 237 GIIKVGEEVEIVGIRDTQKTTVTGVEMFRK 266 (396)
T ss_pred eEEecCCEEEEeecCCCceEEEEEEEECCc
Confidence 99999999988654 2457888886543
No 23
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.78 E-value=2.5e-17 Score=192.52 Aligned_cols=228 Identities=24% Similarity=0.288 Sum_probs=154.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeC--------------------------------CCee
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSG--------------------------------KKRR 121 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~--------------------------------~k~r 121 (1068)
.+..+|+|+|++++|||||+++|++........+....+|+..+ ...+
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 35678999999999999999999875332211111112221110 1468
Q ss_pred EEEEeCCC--Chh-HHHHHHHhcCEEEEEEeCCCCC-chhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHH
Q 046721 122 LQFVECPN--DIN-GMIDCAKFADLALLLIDASHGF-EMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLK 197 (1068)
Q Consensus 122 l~fIDtPG--dl~-smld~akvADlVLlVIDas~g~-e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk 197 (1068)
++|+|||| ++. .|+..+..+|++|||+|++.++ ..++.++|..+...|++++|+|+||+|++.. .........+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~-~~~~~~~~~i~ 160 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK-EKALENYEEIK 160 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH-HHHHHHHHHHH
Confidence 99999999 444 4888899999999999999987 7788899998888998888999999999863 22223333444
Q ss_pred HHhcccccCCCeEEEEecccCCcCCchhhcchHHHHHHhhcccccccccCCeEEEEeEEecCCCccccccCCCCceEEEE
Q 046721 198 HRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWRTSHPYILVDRFEDVTPPERVHVNNKCDRNVAIY 277 (1068)
Q Consensus 198 ~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR~~rPylLadrved~~~~~~i~~~~~~~gtl~Vt 277 (1068)
..+...+....++|++||++| ..+..|..+|....+.+....+..+.+.++++..+..+... ..+..|+ +++
T Consensus 161 ~~l~~~~~~~~~ii~vSA~~g-----~gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~--~~~~~G~-Vv~ 232 (406)
T TIGR03680 161 EFVKGTVAENAPIIPVSALHN-----ANIDALLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTP--PEKLKGG-VIG 232 (406)
T ss_pred hhhhhcccCCCeEEEEECCCC-----CChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcc--ccCCcee-EEE
Confidence 433322344678999999965 56677777776655544322233455777777666432210 0111344 589
Q ss_pred EEEEeeeecCCcEEEE-ecC-----C-------CeeEEeeecCCCC
Q 046721 278 GYLRGCNLKKGTKVHI-AGA-----G-------DYSLAGVTGLADP 310 (1068)
Q Consensus 278 GyVRG~~L~~nqlVhI-pG~-----G-------dfqIk~I~~~~DP 310 (1068)
|.|..+.+++|+.|.| |+. | -.+|++|.....|
T Consensus 233 G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~~ 278 (406)
T TIGR03680 233 GSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYK 278 (406)
T ss_pred EEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEECCEE
Confidence 9999999999999987 652 1 1478888865443
No 24
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.77 E-value=5.2e-17 Score=189.98 Aligned_cols=229 Identities=22% Similarity=0.257 Sum_probs=154.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeC---------------------------C-----Ce
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSG---------------------------K-----KR 120 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~---------------------------~-----k~ 120 (1068)
..|..+|+|+|+.++|||||+.+|++.+......+....+|+..+ . ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 356789999999999999999999875432222222223332110 0 25
Q ss_pred eEEEEeCCC--Chh-HHHHHHHhcCEEEEEEeCCCCC-chhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHH
Q 046721 121 RLQFVECPN--DIN-GMIDCAKFADLALLLIDASHGF-EMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHL 196 (1068)
Q Consensus 121 rl~fIDtPG--dl~-smld~akvADlVLlVIDas~g~-e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~L 196 (1068)
+++|+|||| +|. .++..+..+|++|+|+|++.++ ..++.+++..+...+++++|+|+||+|+.... ......+.+
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~-~~~~~~~~i 164 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKE-RALENYEQI 164 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccch-hHHHHHHHH
Confidence 899999999 343 4788889999999999999887 77888888888888987789999999998632 222333344
Q ss_pred HHHhcccccCCCeEEEEecccCCcCCchhhcchHHHHHHhhcccccccccCCeEEEEeEEecCCCccccccCCCCceEEE
Q 046721 197 KHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWRTSHPYILVDRFEDVTPPERVHVNNKCDRNVAI 276 (1068)
Q Consensus 197 k~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR~~rPylLadrved~~~~~~i~~~~~~~gtl~V 276 (1068)
+..+...+....++|++||+++ ..+..|...|....+.+....+....+.++++..+..+... ..+..|+ ++
T Consensus 165 ~~~l~~~~~~~~~ii~vSA~~g-----~gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~--~~~~~G~-Vv 236 (411)
T PRK04000 165 KEFVKGTVAENAPIIPVSALHK-----VNIDALIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTP--PEKLKGG-VI 236 (411)
T ss_pred HHHhccccCCCCeEEEEECCCC-----cCHHHHHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCcc--ccCCcce-EE
Confidence 4443322334678999999965 56677777776654444322233344667776666432110 0112344 58
Q ss_pred EEEEEeeeecCCcEEEEecCC-------------CeeEEeeecCCCC
Q 046721 277 YGYLRGCNLKKGTKVHIAGAG-------------DYSLAGVTGLADP 310 (1068)
Q Consensus 277 tGyVRG~~L~~nqlVhIpG~G-------------dfqIk~I~~~~DP 310 (1068)
+|.|..+.+++|+.|.|...+ -.+|++|+....+
T Consensus 237 ~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~~ 283 (411)
T PRK04000 237 GGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEK 283 (411)
T ss_pred EEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEECCEE
Confidence 999999999999999874333 1378888765443
No 25
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.76 E-value=5.8e-17 Score=190.50 Aligned_cols=221 Identities=21% Similarity=0.252 Sum_probs=149.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc---cC-------------------------CCCceeccEEE------EeCCC
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT---KL-------------------------KVPEVRGPVTV------VSGKK 119 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~---~~-------------------------~~~tt~~~Iti------~~~~k 119 (1068)
.+..+|+|+|++|+|||||+++|+.... .. ...+...++|+ +...+
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 4568899999999999999999985321 00 00011123332 23457
Q ss_pred eeEEEEeCCC--Chh-HHHHHHHhcCEEEEEEeCCC--CCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC-cHHHHHHHH
Q 046721 120 RRLQFVECPN--DIN-GMIDCAKFADLALLLIDASH--GFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT-DKKKLRKTK 193 (1068)
Q Consensus 120 ~rl~fIDtPG--dl~-smld~akvADlVLlVIDas~--g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk-~~k~l~~vk 193 (1068)
.+++|+|||| ++. .|+..+..||++|||+|++. ++..++.+++..+...|++++|+|+||+|+.. +...+..+.
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 163 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK 163 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence 8999999999 443 47788899999999999998 88888888888888889877899999999975 223344555
Q ss_pred HHHHHHhccccc--CCCeEEEEecccCC----------cCCchhhcchHHHHHHhhcccccccccCCe-EEEEeEEecCC
Q 046721 194 QHLKHRFGTELY--HGAKLFKLSGLIQG----------KYTKKDIGNLAEFISVMKFHSLSWRTSHPY-ILVDRFEDVTP 260 (1068)
Q Consensus 194 k~Lk~~~~~e~~--~~~kVf~ISAl~g~----------~y~~~ei~nLlR~I~~~k~r~l~wR~~rPy-lLadrved~~~ 260 (1068)
+.+...+....+ ...++|++||++|. +|.. ..|+..|... +.+..+ ...|+ +.++++..+.
T Consensus 164 ~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g---~~L~~~l~~~-~~~~~~-~~~p~r~~i~~~~~~~- 237 (425)
T PRK12317 164 EEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNG---PTLLEALDNL-KPPEKP-TDKPLRIPIQDVYSIS- 237 (425)
T ss_pred HHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccH---HHHHHHHhcC-CCCccc-cCCCcEEEEEEEEeeC-
Confidence 555555432222 24689999999872 2221 2244555332 222222 23454 5565655442
Q ss_pred CccccccCCCCceEEEEEEEEeeeecCCcEEEE-ecCCCeeEEeeecCCCC
Q 046721 261 PERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHI-AGAGDYSLAGVTGLADP 310 (1068)
Q Consensus 261 ~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhI-pG~GdfqIk~I~~~~DP 310 (1068)
..|+ +++|.|..+.+++|+.|.| |+.-..+|++|.....|
T Consensus 238 ---------g~G~-vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~~~~ 278 (425)
T PRK12317 238 ---------GVGT-VPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMHHEE 278 (425)
T ss_pred ---------CCeE-EEEEEEeeccEecCCEEEECCCCCeEEEEEEEECCcc
Confidence 2455 5899999999999999875 66557899999876544
No 26
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.75 E-value=1.1e-16 Score=188.78 Aligned_cols=224 Identities=17% Similarity=0.196 Sum_probs=154.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc----------------------------cCCCCceeccEEE------EeCCC
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT----------------------------KLKVPEVRGPVTV------VSGKK 119 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~----------------------------~~~~~tt~~~Iti------~~~~k 119 (1068)
.+..+|+++|+.++|||||+.+|+.... .....+....+|+ +...+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 4567899999999999999999986310 0011112234443 22457
Q ss_pred eeEEEEeCCC--Chh-HHHHHHHhcCEEEEEEeCCCCC-------chhHHHHHHHHHhCCCCcEEEEEeCCCc--CC-cH
Q 046721 120 RRLQFVECPN--DIN-GMIDCAKFADLALLLIDASHGF-------EMETFEFLNLMQNHGLPNVMGVLTHLDK--FT-DK 186 (1068)
Q Consensus 120 ~rl~fIDtPG--dl~-smld~akvADlVLlVIDas~g~-------e~~t~eiL~~L~~~GlP~vIvVLNKiDl--vk-~~ 186 (1068)
.+++|||||| +|. .|+.++..||++|||||++.|+ ..++.+++.++...|+|++|+|+||+|. +. +.
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~ 164 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQ 164 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhH
Confidence 8999999999 444 5899999999999999999886 4689999999999999998999999994 32 34
Q ss_pred HHHHHHHHHHHHHhccccc--CCCeEEEEecccCCcCCc-hh------hcchHHHHHHhhcccccccccCCe-EEEEeEE
Q 046721 187 KKLRKTKQHLKHRFGTELY--HGAKLFKLSGLIQGKYTK-KD------IGNLAEFISVMKFHSLSWRTSHPY-ILVDRFE 256 (1068)
Q Consensus 187 k~l~~vkk~Lk~~~~~e~~--~~~kVf~ISAl~g~~y~~-~e------i~nLlR~I~~~k~r~l~wR~~rPy-lLadrve 256 (1068)
..+..+.+.++..+....+ ...+++|+||++|..... .. ...|+..|.... .+..+. ..|+ +.++++.
T Consensus 165 ~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~~-~~~~~~-~~p~r~~I~~v~ 242 (446)
T PTZ00141 165 ERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTLE-PPKRPV-DKPLRLPLQDVY 242 (446)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCCC-CCCcCC-CCCeEEEEEEEE
Confidence 5677788888877654332 358899999998721110 00 012555554332 222222 3354 5566665
Q ss_pred ecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEE-ecCCCeeEEeeecCCCC
Q 046721 257 DVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHI-AGAGDYSLAGVTGLADP 310 (1068)
Q Consensus 257 d~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhI-pG~GdfqIk~I~~~~DP 310 (1068)
.++ ..|+ +++|.|..+.|++|+.|.| |+.-...|++|.....|
T Consensus 243 ~v~----------g~Gt-vv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~~~ 286 (446)
T PTZ00141 243 KIG----------GIGT-VPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHHEQ 286 (446)
T ss_pred ecC----------CceE-EEEEEEEcceEecCCEEEEccCCcEEEEEEEEecCcc
Confidence 542 2455 5899999999999999876 54446789999876544
No 27
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=2.8e-17 Score=179.08 Aligned_cols=213 Identities=23% Similarity=0.281 Sum_probs=167.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEe--------------------------------CCCee
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVS--------------------------------GKKRR 121 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~--------------------------------~~k~r 121 (1068)
.|-.+|++|||.++|||||+.+|+|-.+.....+.+..|+|.. .--++
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 5678999999999999999999999654332222222233210 01368
Q ss_pred EEEEeCCCC---hhHHHHHHHhcCEEEEEEeCCCCC-chhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHH
Q 046721 122 LQFVECPND---INGMIDCAKFADLALLLIDASHGF-EMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLK 197 (1068)
Q Consensus 122 l~fIDtPGd---l~smld~akvADlVLlVIDas~g~-e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk 197 (1068)
+.|+|+||. +..||..+...|.+||||.|++++ .+||.++|..|.-.|+.++|+|-||+|++. .+...+..++++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~-~E~AlE~y~qIk 166 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS-RERALENYEQIK 166 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec-HHHHHHHHHHHH
Confidence 999999993 445999999999999999999775 579999999999999999999999999997 455667778888
Q ss_pred HHhcccccCCCeEEEEecccCCcCCchhhcchHHHHHHhhcccccccccCCeEEEEeEEecCCCccccccCCCCceEEEE
Q 046721 198 HRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWRTSHPYILVDRFEDVTPPERVHVNNKCDRNVAIY 277 (1068)
Q Consensus 198 ~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR~~rPylLadrved~~~~~~i~~~~~~~gtl~Vt 277 (1068)
+++...+..+++|+|+||.++ ..+..|+.+|....+.|..--+..|-|++-|-+|++.|..-.. +..|. ++.
T Consensus 167 ~FvkGt~Ae~aPIIPiSA~~~-----~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~--~L~GG-ViG 238 (415)
T COG5257 167 EFVKGTVAENAPIIPISAQHK-----ANIDALIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPE--ELKGG-VIG 238 (415)
T ss_pred HHhcccccCCCceeeehhhhc-----cCHHHHHHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHH--HccCc-eec
Confidence 899999999999999999854 6677788999888888876667779999999999987753211 11233 367
Q ss_pred EEEEeeeecCCcEEEE-ec
Q 046721 278 GYLRGCNLKKGTKVHI-AG 295 (1068)
Q Consensus 278 GyVRG~~L~~nqlVhI-pG 295 (1068)
|.+-.+.|++|+.+.| ||
T Consensus 239 Gsl~~G~l~vGDEIEIrPG 257 (415)
T COG5257 239 GSLVQGVLRVGDEIEIRPG 257 (415)
T ss_pred ceeeeeeEecCCeEEecCC
Confidence 7777777899998875 55
No 28
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.73 E-value=8.8e-17 Score=170.02 Aligned_cols=144 Identities=24% Similarity=0.276 Sum_probs=108.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcccc-------------CCCCceeccEEE------EeCCCeeEEEEeCCC--Chh-H
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTK-------------LKVPEVRGPVTV------VSGKKRRLQFVECPN--DIN-G 133 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~-------------~~~~tt~~~Iti------~~~~k~rl~fIDtPG--dl~-s 133 (1068)
-..|+|+|++++|||||+++|+..... ....+....+|+ +...+.+++|+|||| ++. .
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 367999999999999999999874110 011111233442 223578999999999 444 4
Q ss_pred HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccccc--CCCeEE
Q 046721 134 MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELY--HGAKLF 211 (1068)
Q Consensus 134 mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~--~~~kVf 211 (1068)
++.++..||++|+|||++.++..++.+++..+...|+|.+|+|+||+|++...+.+..+.+.++..+....+ ...+++
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~ii 161 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIV 161 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEE
Confidence 888899999999999999999999999999999999998889999999985444444456666666543322 468999
Q ss_pred EEecccCC
Q 046721 212 KLSGLIQG 219 (1068)
Q Consensus 212 ~ISAl~g~ 219 (1068)
|+||++|.
T Consensus 162 piSa~~g~ 169 (195)
T cd01884 162 RGSALKAL 169 (195)
T ss_pred EeeCcccc
Confidence 99999873
No 29
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.71 E-value=1.3e-16 Score=166.94 Aligned_cols=154 Identities=21% Similarity=0.361 Sum_probs=114.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccC---------------C------CCceeccEEEEe--CCCeeEEEEeCCCC--
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKL---------------K------VPEVRGPVTVVS--GKKRRLQFVECPND-- 130 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~---------------~------~~tt~~~Iti~~--~~k~rl~fIDtPGd-- 130 (1068)
-++|+|+|+.++|||||+++|+...... . -.+......... ...+.++|+||||.
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 3789999999999999999999753110 0 000111111222 45789999999995
Q ss_pred hh-HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccccc-C--
Q 046721 131 IN-GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELY-H-- 206 (1068)
Q Consensus 131 l~-smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~-~-- 206 (1068)
+. .++.++..+|++|+|||+..|+..++.+++..+...++| +|+|+||+|++ ...+.++.+.+...++.... .
T Consensus 83 f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~--~~~~~~~~~~~~~~l~~~~~~~~~ 159 (188)
T PF00009_consen 83 FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLI--EKELEEIIEEIKEKLLKEYGENGE 159 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSS--HHHHHHHHHHHHHHHHHHTTSTTT
T ss_pred eeecccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccch--hhhHHHHHHHHHHHhccccccCcc
Confidence 33 488889999999999999999999999999999999999 89999999998 45667777777755543332 2
Q ss_pred -CCeEEEEecccCCcCCchhhcchHHHHHHhh
Q 046721 207 -GAKLFKLSGLIQGKYTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 207 -~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k 237 (1068)
..+++++||++| .++..|+..|....
T Consensus 160 ~~~~vi~~Sa~~g-----~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 160 EIVPVIPISALTG-----DGIDELLEALVELL 186 (188)
T ss_dssp STEEEEEEBTTTT-----BTHHHHHHHHHHHS
T ss_pred ccceEEEEecCCC-----CCHHHHHHHHHHhC
Confidence 468999999976 45666777665443
No 30
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.71 E-value=1.3e-15 Score=179.18 Aligned_cols=226 Identities=20% Similarity=0.242 Sum_probs=150.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhcc---cc-------------------------CCCCceeccEEE------EeCC
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHY---TK-------------------------LKVPEVRGPVTV------VSGK 118 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~---~~-------------------------~~~~tt~~~Iti------~~~~ 118 (1068)
+.+.++|+|+|++++|||||+++|+... .. ....+....+|+ +...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 3567889999999999999999998531 10 000111123332 2245
Q ss_pred CeeEEEEeCCC--Chh-HHHHHHHhcCEEEEEEeCCCC---CchhHHHHHHHHHhCCCCcEEEEEeCCCcCC-cHHHHHH
Q 046721 119 KRRLQFVECPN--DIN-GMIDCAKFADLALLLIDASHG---FEMETFEFLNLMQNHGLPNVMGVLTHLDKFT-DKKKLRK 191 (1068)
Q Consensus 119 k~rl~fIDtPG--dl~-smld~akvADlVLlVIDas~g---~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk-~~k~l~~ 191 (1068)
+..++|+|||| ++. .++..+..||++|||+|++.+ ...++.+++.++...+++++|+|+||+|+.. ....+..
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~ 163 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA 163 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence 77999999999 343 477788999999999999988 6667777777777788877999999999974 2344555
Q ss_pred HHHHHHHHhccccc--CCCeEEEEecccCCcCCc-h------hhcchHHHHHHhhcccccccccCCe-EEEEeEEecCCC
Q 046721 192 TKQHLKHRFGTELY--HGAKLFKLSGLIQGKYTK-K------DIGNLAEFISVMKFHSLSWRTSHPY-ILVDRFEDVTPP 261 (1068)
Q Consensus 192 vkk~Lk~~~~~e~~--~~~kVf~ISAl~g~~y~~-~------ei~nLlR~I~~~k~r~l~wR~~rPy-lLadrved~~~~ 261 (1068)
+.+.++..+..... ...+++++||++|..... . ....|+..|.... .+.. ....|+ +.++++..++
T Consensus 164 ~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~~~-~~~~-~~~~p~r~~i~~v~~~~-- 239 (426)
T TIGR00483 164 IKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDALE-PPEK-PTDKPLRIPIQDVYSIT-- 239 (426)
T ss_pred HHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhcCC-CCCC-ccCCCcEEEEEEEEecC--
Confidence 55555555432222 347899999998722110 0 0124666664332 2221 223454 5566665542
Q ss_pred ccccccCCCCceEEEEEEEEeeeecCCcEEEE-ecCCCeeEEeeecCCCCC
Q 046721 262 ERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHI-AGAGDYSLAGVTGLADPC 311 (1068)
Q Consensus 262 ~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhI-pG~GdfqIk~I~~~~DP~ 311 (1068)
+.|+ +++|.|..+.+++|+.|.| |+.-..+|++|+....|+
T Consensus 240 --------g~G~-vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~~~~ 281 (426)
T TIGR00483 240 --------GVGT-VPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHHEQI 281 (426)
T ss_pred --------CCeE-EEEEEEccceeecCCEEEECCCCcEEEEEEEEECCccc
Confidence 2455 4899999999999999987 554567899998765543
No 31
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.71 E-value=1.9e-16 Score=181.58 Aligned_cols=151 Identities=21% Similarity=0.380 Sum_probs=126.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhc---cccCCCCceeccEEE-EeCCCeeEEEEeCCC--------------ChhHHHH
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKH---YTKLKVPEVRGPVTV-VSGKKRRLQFVECPN--------------DINGMID 136 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~---~~~~~~~tt~~~Iti-~~~~k~rl~fIDtPG--------------dl~smld 136 (1068)
.|+.|||||.||+|||||+|+|+++ .++....||+.+|.+ +..+.+.+.||||.| +...++.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 6899999999999999999999997 477888999998884 445688999999998 2334777
Q ss_pred HHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCc-HHHHHHHHHHHHHHhcccccCCCeEEEEec
Q 046721 137 CAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTD-KKKLRKTKQHLKHRFGTELYHGAKLFKLSG 215 (1068)
Q Consensus 137 ~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~-~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISA 215 (1068)
+...||+|++|+||+.|+..++..++..+...|.+ +|+|+||+|++.. .......++.|...| .+..+++++++||
T Consensus 257 aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~-~vIvvNKWDl~~~~~~~~~~~k~~i~~~l--~~l~~a~i~~iSA 333 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQDLRIAGLIEEAGRG-IVIVVNKWDLVEEDEATMEEFKKKLRRKL--PFLDFAPIVFISA 333 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCC-eEEEEEccccCCchhhHHHHHHHHHHHHh--ccccCCeEEEEEe
Confidence 88999999999999999999999999999999999 7889999999873 345666777776655 5668999999999
Q ss_pred ccCCcCCchhhcchHHHH
Q 046721 216 LIQGKYTKKDIGNLAEFI 233 (1068)
Q Consensus 216 l~g~~y~~~ei~nLlR~I 233 (1068)
+++ ..+..|+..+
T Consensus 334 ~~~-----~~i~~l~~~i 346 (444)
T COG1160 334 LTG-----QGLDKLFEAI 346 (444)
T ss_pred cCC-----CChHHHHHHH
Confidence 976 4444555444
No 32
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.70 E-value=1.2e-15 Score=178.33 Aligned_cols=220 Identities=19% Similarity=0.199 Sum_probs=145.1
Q ss_pred EEEEECCCCCChhHHHHHHHhcc---cc-------------C--------------CCCceeccEEE------EeCCCee
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY---TK-------------L--------------KVPEVRGPVTV------VSGKKRR 121 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~---~~-------------~--------------~~~tt~~~Iti------~~~~k~r 121 (1068)
.|+|+|++++|||||+++|+... .. . ...+...++|+ ....+.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 58999999999999999997541 00 0 00111223332 2245789
Q ss_pred EEEEeCCC--Chh-HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCc-HHHHHHHHHHHH
Q 046721 122 LQFVECPN--DIN-GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTD-KKKLRKTKQHLK 197 (1068)
Q Consensus 122 l~fIDtPG--dl~-smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~-~k~l~~vkk~Lk 197 (1068)
++|+|||| +|. .|+.++..||++|||||++.|+..++.+++.++...|++++|+|+||+|++.. ...+..+...+.
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~ 161 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYL 161 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHH
Confidence 99999999 454 58889999999999999999999999999999999999889999999999852 233444555554
Q ss_pred HHhcccccCCCeEEEEecccCCcCCc-h------hhcchHHHHHHhhcccccccccCCeEE-EEeEEecCCCccccccCC
Q 046721 198 HRFGTELYHGAKLFKLSGLIQGKYTK-K------DIGNLAEFISVMKFHSLSWRTSHPYIL-VDRFEDVTPPERVHVNNK 269 (1068)
Q Consensus 198 ~~~~~e~~~~~kVf~ISAl~g~~y~~-~------ei~nLlR~I~~~k~r~l~wR~~rPylL-adrved~~~~~~i~~~~~ 269 (1068)
..+....+...+++++||++|..... . ....|+.+|.... .+... ...|+.+ ++++.....
T Consensus 162 ~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~~~-~~~~~-~~~p~r~~i~~v~~~~~--------- 230 (406)
T TIGR02034 162 AFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILETVE-VERDA-QDLPLRFPVQYVNRPNL--------- 230 (406)
T ss_pred HHHHHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHHHHhcC-CCCCc-CCCCcccceEEEeecCC---------
Confidence 44332223456899999998721110 0 1123555554432 22222 2335433 334332211
Q ss_pred CCceEEEEEEEEeeeecCCcEEE-EecCCCeeEEeeecCCCC
Q 046721 270 CDRNVAIYGYLRGCNLKKGTKVH-IAGAGDYSLAGVTGLADP 310 (1068)
Q Consensus 270 ~~gtl~VtGyVRG~~L~~nqlVh-IpG~GdfqIk~I~~~~DP 310 (1068)
. ..-++|.|..+.+++|+.|. +|+.-..+|++|.....|
T Consensus 231 -~-~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~ 270 (406)
T TIGR02034 231 -D-FRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFDGD 270 (406)
T ss_pred -C-cEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECCcc
Confidence 0 11267999999999999887 466557889999876544
No 33
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.70 E-value=1.9e-15 Score=179.71 Aligned_cols=225 Identities=18% Similarity=0.201 Sum_probs=147.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc---cC----------CCC-----------------ceeccEEE------EeC
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT---KL----------KVP-----------------EVRGPVTV------VSG 117 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~---~~----------~~~-----------------tt~~~Iti------~~~ 117 (1068)
.++..|+|||++|+|||||+++|+.... .. ... +...++|+ ...
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 4568999999999999999999986421 00 011 11123332 224
Q ss_pred CCeeEEEEeCCC--Chh-HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC-cHHHHHHHH
Q 046721 118 KKRRLQFVECPN--DIN-GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT-DKKKLRKTK 193 (1068)
Q Consensus 118 ~k~rl~fIDtPG--dl~-smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk-~~k~l~~vk 193 (1068)
.+.+++|||||| +|. .|+..+..||++|||||+..|+..++.+++.++...|++++|+|+||+|++. +...+..+.
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~ 184 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIR 184 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHH
Confidence 577999999999 343 4788889999999999999999999998888888889888899999999984 233345555
Q ss_pred HHHHHHhccc-ccCCCeEEEEecccCCcCCc-h------hhcchHHHHHHhhcccccccccCCe-EEEEeEEecCCCccc
Q 046721 194 QHLKHRFGTE-LYHGAKLFKLSGLIQGKYTK-K------DIGNLAEFISVMKFHSLSWRTSHPY-ILVDRFEDVTPPERV 264 (1068)
Q Consensus 194 k~Lk~~~~~e-~~~~~kVf~ISAl~g~~y~~-~------ei~nLlR~I~~~k~r~l~wR~~rPy-lLadrved~~~~~~i 264 (1068)
+.+...+... +....+++++||++|..... . ....|+.+|... +.+..+. ..|+ +.++++.....
T Consensus 185 ~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~i-~~~~~~~-~~p~r~~I~~v~~~~~---- 258 (474)
T PRK05124 185 EDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLETV-DIQRVVD-AQPFRFPVQYVNRPNL---- 258 (474)
T ss_pred HHHHHHHHhcCCCCCceEEEEEeecCCCcccccccccccchhhHHHHHhhc-CCCCCCC-CCCceeeEEEEEecCC----
Confidence 5554433211 13468899999998732110 0 112344555332 2222222 2354 34444432211
Q ss_pred cccCCCCceEEEEEEEEeeeecCCcEEEE-ecCCCeeEEeeecCCCCC
Q 046721 265 HVNNKCDRNVAIYGYLRGCNLKKGTKVHI-AGAGDYSLAGVTGLADPC 311 (1068)
Q Consensus 265 ~~~~~~~gtl~VtGyVRG~~L~~nqlVhI-pG~GdfqIk~I~~~~DP~ 311 (1068)
... -+.|.|..+.+++|+.|.| |+....+|++|.....|+
T Consensus 259 ----~~~---g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v 299 (474)
T PRK05124 259 ----DFR---GYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDL 299 (474)
T ss_pred ----ccc---ceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCccc
Confidence 001 2579999999999998865 554468899998776543
No 34
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.70 E-value=1.1e-15 Score=187.97 Aligned_cols=224 Identities=17% Similarity=0.193 Sum_probs=147.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc---cc----------CCCCce-----------------eccEEE------EeC
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY---TK----------LKVPEV-----------------RGPVTV------VSG 117 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~---~~----------~~~~tt-----------------~~~Iti------~~~ 117 (1068)
.+...|+|||++|+|||||+++|+... +. ....++ ..++|+ ...
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 445789999999999999999999742 10 011111 122332 223
Q ss_pred CCeeEEEEeCCC--Chh-HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC-cHHHHHHHH
Q 046721 118 KKRRLQFVECPN--DIN-GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT-DKKKLRKTK 193 (1068)
Q Consensus 118 ~k~rl~fIDtPG--dl~-smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk-~~k~l~~vk 193 (1068)
.+.+++|+|||| ++. .|+.++..||++|||||+..|+..++.+++.++...|++++|+|+||+|++. +...+..+.
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~ 181 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIV 181 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHH
Confidence 577899999999 344 4888899999999999999999999999999888899888899999999985 233445555
Q ss_pred HHHHHHhcccccCCCeEEEEecccCCcCCc-h------hhcchHHHHHHhhcccccccccCCeEE-EEeEEecCCCcccc
Q 046721 194 QHLKHRFGTELYHGAKLFKLSGLIQGKYTK-K------DIGNLAEFISVMKFHSLSWRTSHPYIL-VDRFEDVTPPERVH 265 (1068)
Q Consensus 194 k~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~-~------ei~nLlR~I~~~k~r~l~wR~~rPylL-adrved~~~~~~i~ 265 (1068)
..+...+....+...+++++||++|..... . ....|+..|....+. ... ...|+.+ ++.+.....
T Consensus 182 ~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~~~~-~~~-~~~p~r~~i~~v~~~~~----- 254 (632)
T PRK05506 182 ADYRAFAAKLGLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETVEIA-SDR-NLKDFRFPVQYVNRPNL----- 254 (632)
T ss_pred HHHHHHHHHcCCCCccEEEEecccCCCccccccCCCcccHhHHHHHHhcCCCC-CCc-CCCCceeeEEEEEecCC-----
Confidence 555544433333557899999998722110 0 012344555433222 221 3456644 334332110
Q ss_pred ccCCCCceEEEEEEEEeeeecCCcEEEEec-CCCeeEEeeecCCCC
Q 046721 266 VNNKCDRNVAIYGYLRGCNLKKGTKVHIAG-AGDYSLAGVTGLADP 310 (1068)
Q Consensus 266 ~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG-~GdfqIk~I~~~~DP 310 (1068)
...-++|.|..+.+++|+.|.|.. .-...|++|.....+
T Consensus 255 ------~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~ 294 (632)
T PRK05506 255 ------DFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGD 294 (632)
T ss_pred ------CceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECCce
Confidence 111268999999999999987644 336789999876554
No 35
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.69 E-value=1.5e-15 Score=179.32 Aligned_cols=226 Identities=19% Similarity=0.194 Sum_probs=152.8
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccc----------------------------cCCCCceeccEEEE------eCC
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYT----------------------------KLKVPEVRGPVTVV------SGK 118 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~----------------------------~~~~~tt~~~Iti~------~~~ 118 (1068)
+.|..+|+++|+.++|||||+.+|+.... .....+...++|+- ...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 45678899999999999999999975310 00111122345532 245
Q ss_pred CeeEEEEeCCC--Chh-HHHHHHHhcCEEEEEEeCCCC-Cc------hhHHHHHHHHHhCCCCcEEEEEeCCCcCC---c
Q 046721 119 KRRLQFVECPN--DIN-GMIDCAKFADLALLLIDASHG-FE------METFEFLNLMQNHGLPNVMGVLTHLDKFT---D 185 (1068)
Q Consensus 119 k~rl~fIDtPG--dl~-smld~akvADlVLlVIDas~g-~e------~~t~eiL~~L~~~GlP~vIvVLNKiDlvk---~ 185 (1068)
++.++|||||| +|. .|+.++..||++|||+|++.| ++ .++.+++.++...|+|++|+|+||+|+.. .
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~ 163 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYS 163 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhh
Confidence 78999999999 454 589999999999999999976 33 68889999999999998899999999862 1
Q ss_pred HHHHHHHHHHHHHHhccccc--CCCeEEEEecccCCcCC-chh------hcchHHHHHHhhcccccccccCCeEE-EEeE
Q 046721 186 KKKLRKTKQHLKHRFGTELY--HGAKLFKLSGLIQGKYT-KKD------IGNLAEFISVMKFHSLSWRTSHPYIL-VDRF 255 (1068)
Q Consensus 186 ~k~l~~vkk~Lk~~~~~e~~--~~~kVf~ISAl~g~~y~-~~e------i~nLlR~I~~~k~r~l~wR~~rPylL-adrv 255 (1068)
...+..+.+.++.++....+ ...+++++||++|.... ... ...|+..|.... .+... ...|+.+ ++.+
T Consensus 164 ~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~i~-~p~~~-~~~plr~~I~~v 241 (447)
T PLN00043 164 KARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQIN-EPKRP-SDKPLRLPLQDV 241 (447)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhhcC-CCccc-cCCCcEEEEEEE
Confidence 34566777777777654322 35789999999873211 000 012455554322 22222 2346543 4444
Q ss_pred EecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecC-CCeeEEeeecCCCCC
Q 046721 256 EDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGA-GDYSLAGVTGLADPC 311 (1068)
Q Consensus 256 ed~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~-GdfqIk~I~~~~DP~ 311 (1068)
..+ +..|+ +++|.|..+.+++|+.|.+.-. --.+|++|+....|+
T Consensus 242 ~~~----------~g~G~-vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~~~~v 287 (447)
T PLN00043 242 YKI----------GGIGT-VPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESL 287 (447)
T ss_pred EEe----------CCcEE-EEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEECCeEe
Confidence 333 12455 5899999999999999876433 367899998765443
No 36
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=2.3e-15 Score=170.35 Aligned_cols=221 Identities=21% Similarity=0.259 Sum_probs=156.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc---------------------------ccCC-CCceeccEEEE------eCCC
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY---------------------------TKLK-VPEVRGPVTVV------SGKK 119 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~---------------------------~~~~-~~tt~~~Iti~------~~~k 119 (1068)
.|...++++||+++|||||+.+|+-.. .-.+ -.+...++|+. ...+
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 456789999999999999999998631 0001 11122445542 2457
Q ss_pred eeEEEEeCCC--Chh-HHHHHHHhcCEEEEEEeCCCC-------CchhHHHHHHHHHhCCCCcEEEEEeCCCcCC-cHHH
Q 046721 120 RRLQFVECPN--DIN-GMIDCAKFADLALLLIDASHG-------FEMETFEFLNLMQNHGLPNVMGVLTHLDKFT-DKKK 188 (1068)
Q Consensus 120 ~rl~fIDtPG--dl~-smld~akvADlVLlVIDas~g-------~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk-~~k~ 188 (1068)
.+++++|||| ||. .|+..+..||+.||||||+.+ ...++.+++-++..+|+..+|+++||+|.+. +.+.
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~r 164 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEER 164 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHH
Confidence 8899999999 555 499999999999999999977 7778999999999999999999999999996 4566
Q ss_pred HHHHHHHHHHHhccccc--CCCeEEEEecccC----------CcCCchhhcchHHHHHHhhcccccccccCCeEEEEeEE
Q 046721 189 LRKTKQHLKHRFGTELY--HGAKLFKLSGLIQ----------GKYTKKDIGNLAEFISVMKFHSLSWRTSHPYILVDRFE 256 (1068)
Q Consensus 189 l~~vkk~Lk~~~~~e~~--~~~kVf~ISAl~g----------~~y~~~ei~nLlR~I~~~k~r~l~wR~~rPylLadrve 256 (1068)
+.+++..+...+....+ ...+++|+||..| .+|.. -.|+..|....+..-. ...|+.+...
T Consensus 165 f~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~G---pTLleaLd~~~~p~~~--~d~Plr~pI~-- 237 (428)
T COG5256 165 FEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKG---PTLLEALDQLEPPERP--LDKPLRLPIQ-- 237 (428)
T ss_pred HHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccC---ChHHHHHhccCCCCCC--CCCCeEeEee--
Confidence 77888777774433333 3578999999987 23332 3345555433332111 3457665532
Q ss_pred ecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEE-ecCCCeeEEeeecCCC
Q 046721 257 DVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHI-AGAGDYSLAGVTGLAD 309 (1068)
Q Consensus 257 d~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhI-pG~GdfqIk~I~~~~D 309 (1068)
++.. + ...+++ ++|.|..+.|++|+.|.| |+.-.-+|++|+....
T Consensus 238 ~v~~---i----~~~gtv-~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~~~ 283 (428)
T COG5256 238 DVYS---I----SGIGTV-PVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMHHE 283 (428)
T ss_pred eEEE---e----cCCceE-EEEEEeeeeeccCCEEEEecCcceEEEeeeeeccc
Confidence 2211 1 124565 778999999999998875 6666889999987643
No 37
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.69 E-value=2.2e-15 Score=183.08 Aligned_cols=216 Identities=19% Similarity=0.200 Sum_probs=148.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc---cC-CC---------CceeccEEE------EeCCCeeEEEEeCCC--ChhH-H
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT---KL-KV---------PEVRGPVTV------VSGKKRRLQFVECPN--DING-M 134 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~---~~-~~---------~tt~~~Iti------~~~~k~rl~fIDtPG--dl~s-m 134 (1068)
++||||||+++|||||+++|+.... .. .+ .+...+||+ +.+.+.+|+|||||| +|.. +
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 6899999999999999999986411 10 00 011223443 234678999999999 5654 7
Q ss_pred HHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccccc----CCCeE
Q 046721 135 IDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELY----HGAKL 210 (1068)
Q Consensus 135 ld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~----~~~kV 210 (1068)
..++..||++|||+|++.|...++..++..+...|+| +|+|+||+|+... ....+...+...|..... -..++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip-~IVviNKiD~~~a--~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRPSA--RPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCC-EEEEEECCCCCCc--CHHHHHHHHHHHHHhhccccccccCcE
Confidence 7889999999999999999999999999999999999 6899999998642 223334444444321111 13579
Q ss_pred EEEecccCCcC-----CchhhcchHHHHHHhhcccccccccCCe-EEEEeEEecCCCccccccCCCCceEEEEEEEEeee
Q 046721 211 FKLSGLIQGKY-----TKKDIGNLAEFISVMKFHSLSWRTSHPY-ILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCN 284 (1068)
Q Consensus 211 f~ISAl~g~~y-----~~~ei~nLlR~I~~~k~r~l~wR~~rPy-lLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~ 284 (1068)
+++||+.|+.. ....+..|+..|....+.+... ...|+ +++..+...+ ..|++ ++|.|..+.
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~-~~~pl~~~V~~i~~d~----------~~Grv-~~gRV~sG~ 226 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGD-LDEPLQMLVTNLDYDE----------YLGRI-AIGRVHRGT 226 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCC-CCCCEEEEEEEEEeeC----------CCceE-EEEEEEeCE
Confidence 99999988531 1235667777777777766432 23465 4444443332 24565 889999999
Q ss_pred ecCCcEEEEecCCC----eeEEeeecC
Q 046721 285 LKKGTKVHIAGAGD----YSLAGVTGL 307 (1068)
Q Consensus 285 L~~nqlVhIpG~Gd----fqIk~I~~~ 307 (1068)
|++|+.|.+...++ ..|++|...
T Consensus 227 lk~G~~V~~~~~~~~~~~~kV~~i~~~ 253 (594)
T TIGR01394 227 VKKGQQVALMKRDGTIENGRISKLLGF 253 (594)
T ss_pred EccCCEEEEecCCCceeEEEEEEEEEc
Confidence 99999998876533 356666543
No 38
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.5e-15 Score=163.92 Aligned_cols=221 Identities=20% Similarity=0.268 Sum_probs=162.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccc-------------cCCCCceeccEEEEe------CCCeeEEEEeCCC--C-
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYT-------------KLKVPEVRGPVTVVS------GKKRRLQFVECPN--D- 130 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~-------------~~~~~tt~~~Iti~~------~~k~rl~fIDtPG--d- 130 (1068)
..|..+|+.|||.++|||||..+|+.... ...+.+...+|||.+ ..++.+.++|||| |
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 45678899999999999999999987532 112333345677643 3588999999999 3
Q ss_pred hhHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccccc--CCC
Q 046721 131 INGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELY--HGA 208 (1068)
Q Consensus 131 l~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~--~~~ 208 (1068)
+..||..|..+|..|||++|..|..+++.+++-+.+..|+|.+++++||+|++.+.+.+.-+...++..+...-+ ...
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~ 168 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDT 168 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 446999999999999999999999999999999888899999999999999998777666666666666654444 367
Q ss_pred eEEEEecccCCcC---CchhhcchHHHHHHhhcccccccccCCeEEEE-eEEecCCCccccccCCCCceEEEEEEEEeee
Q 046721 209 KLFKLSGLIQGKY---TKKDIGNLAEFISVMKFHSLSWRTSHPYILVD-RFEDVTPPERVHVNNKCDRNVAIYGYLRGCN 284 (1068)
Q Consensus 209 kVf~ISAl~g~~y---~~~ei~nLlR~I~~~k~r~l~wR~~rPylLad-rved~~~~~~i~~~~~~~gtl~VtGyVRG~~ 284 (1068)
+|+.-||+....- -..-+..|+..+..-.+.|.. ....|+++.. .+..++ .+..+|+|.|.-+.
T Consensus 169 Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per-~~dkPflmpvEdvfsIs-----------grgtvvtGrVeRG~ 236 (394)
T COG0050 169 PIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER-DIDKPFLMPVEDVFSIS-----------GRGTVVTGRVERGI 236 (394)
T ss_pred ceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC-cccccccccceeeEEEc-----------CceeEEEEEEeeee
Confidence 8888888754111 123355666666555554432 2345887763 233331 34557999999999
Q ss_pred ecCCcEEEEecCCCeeEEeee
Q 046721 285 LKKGTKVHIAGAGDYSLAGVT 305 (1068)
Q Consensus 285 L~~nqlVhIpG~GdfqIk~I~ 305 (1068)
|++|+.|.|+|....+-..++
T Consensus 237 lkvg~eveivG~~~~~kttvt 257 (394)
T COG0050 237 LKVGEEVEIVGIKETQKTTVT 257 (394)
T ss_pred eccCCEEEEecccccceeEEE
Confidence 999999999998855444443
No 39
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.67 E-value=6.5e-15 Score=178.36 Aligned_cols=223 Identities=21% Similarity=0.290 Sum_probs=145.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccC-CCC-ceec-cEEEEeC------------------CCeeEEEEeCCC--Chh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVP-EVRG-PVTVVSG------------------KKRRLQFVECPN--DIN 132 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~-tt~~-~Iti~~~------------------~k~rl~fIDtPG--dl~ 132 (1068)
|++|+|+|++|||||||+|+|++..... .+. .|.. +.+.+.. +...++|+|||| .+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 4589999999999999999999874321 111 1110 1111100 012489999999 455
Q ss_pred H-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHH-------------HHHHHHH----
Q 046721 133 G-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKK-------------KLRKTKQ---- 194 (1068)
Q Consensus 133 s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k-------------~l~~vkk---- 194 (1068)
. +...+..||++|||+|++.++..++++++..+...++| +|+|+||+|+..... +...+..
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vp-iIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~ 162 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTP-FVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDT 162 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCC-EEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHH
Confidence 5 44567899999999999999999999999999889999 899999999974211 0011111
Q ss_pred -------HHHHH-hc-------ccccCCCeEEEEecccCCcCCchhhcchHHHHHHhhcc----cccccccCCe-EEEEe
Q 046721 195 -------HLKHR-FG-------TELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFH----SLSWRTSHPY-ILVDR 254 (1068)
Q Consensus 195 -------~Lk~~-~~-------~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r----~l~wR~~rPy-lLadr 254 (1068)
.|... +. ..+....+++++||++| .++.+|+..|.....+ .+......|. +.+.+
T Consensus 163 ~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tG-----eGideLl~~l~~l~~~~l~~~l~~~~~~~~~~~V~e 237 (590)
T TIGR00491 163 KVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITG-----EGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILE 237 (590)
T ss_pred HHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCC-----CChhHHHHHHHHHHHHHhhhhhccCCCCCeEEEEEE
Confidence 11110 01 13445689999999976 6666777666433222 2222222333 33333
Q ss_pred EEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCCCeeEEeeecCCCCCCCCh
Q 046721 255 FEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAGDYSLAGVTGLADPCPLPS 315 (1068)
Q Consensus 255 ved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~GdfqIk~I~~~~DP~pl~~ 315 (1068)
+... ++.|+ +++|.|..+.|++|+.+.+-+.++-...+|..+-+|-||.+
T Consensus 238 ~~~~----------~G~G~-v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e 287 (590)
T TIGR00491 238 VKEE----------TGLGM-TIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEE 287 (590)
T ss_pred EEEc----------CCCce-EEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCcccc
Confidence 3222 23454 58999999999999999988877756667777778877665
No 40
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.67 E-value=2e-15 Score=160.24 Aligned_cols=158 Identities=25% Similarity=0.308 Sum_probs=112.4
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeC---------------------------------------
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSG--------------------------------------- 117 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~--------------------------------------- 117 (1068)
++|||+|+.++|||||+.+|++.+......+...++++..+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 47999999999999999999876432223333323332110
Q ss_pred CCeeEEEEeCCCC--hh-HHHHHHHhcCEEEEEEeCCCC-CchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHH
Q 046721 118 KKRRLQFVECPND--IN-GMIDCAKFADLALLLIDASHG-FEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTK 193 (1068)
Q Consensus 118 ~k~rl~fIDtPGd--l~-smld~akvADlVLlVIDas~g-~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vk 193 (1068)
...+++||||||. +. .++.++..+|++|||+|++.+ ...++.+++..+...+++++|+|+||+|+... ..+....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~-~~~~~~~ 159 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKE-EQALENY 159 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCH-HHHHHHH
Confidence 0268999999994 33 478888999999999999974 56677788888877888778999999999863 3344444
Q ss_pred HHHHHHhcccccCCCeEEEEecccCCcCCchhhcchHHHHHHhhccc
Q 046721 194 QHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFHS 240 (1068)
Q Consensus 194 k~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~ 240 (1068)
+.++..+........++|++||++| .++..|..+|....+.|
T Consensus 160 ~~i~~~~~~~~~~~~~i~~vSA~~g-----~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 160 EQIKKFVKGTIAENAPIIPISAQLK-----YNIDVLLEYIVKKIPTP 201 (203)
T ss_pred HHHHHHHhccccCCCcEEEEeCCCC-----CCHHHHHHHHHHhCCCC
Confidence 5555554333334678999999965 66777888876655443
No 41
>PRK10218 GTP-binding protein; Provisional
Probab=99.64 E-value=2.2e-14 Score=174.30 Aligned_cols=206 Identities=16% Similarity=0.134 Sum_probs=144.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc---ccCC----------CCceeccEEEE------eCCCeeEEEEeCCC--ChhH-
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY---TKLK----------VPEVRGPVTVV------SGKKRRLQFVECPN--DING- 133 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~---~~~~----------~~tt~~~Iti~------~~~k~rl~fIDtPG--dl~s- 133 (1068)
.++|+|||++++|||||+++|+... .... ......++|+. ...+..+.|||||| ++..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 5789999999999999999999731 1110 01112334432 34678999999999 4554
Q ss_pred HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccc----ccCCCe
Q 046721 134 MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTE----LYHGAK 209 (1068)
Q Consensus 134 mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e----~~~~~k 209 (1068)
+..+++.||++|||+|++.++..++..++..+...|+| +|+|+||+|+.. .....++..+...|... .....+
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip-~IVviNKiD~~~--a~~~~vl~ei~~l~~~l~~~~~~~~~P 161 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLK-PIVVINKVDRPG--ARPDWVVDQVFDLFVNLDATDEQLDFP 161 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCC-EEEEEECcCCCC--CchhHHHHHHHHHHhccCccccccCCC
Confidence 67788999999999999999999999999999999999 688999999864 22344445555554221 112467
Q ss_pred EEEEecccCCc-CCc----hhhcchHHHHHHhhcccccccccCCe-EEEEeEEecCCCccccccCCCCceEEEEEEEEee
Q 046721 210 LFKLSGLIQGK-YTK----KDIGNLAEFISVMKFHSLSWRTSHPY-ILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGC 283 (1068)
Q Consensus 210 Vf~ISAl~g~~-y~~----~ei~nLlR~I~~~k~r~l~wR~~rPy-lLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~ 283 (1068)
|+++||++|+. +.. .++..|+..|....|.|... ...|+ +++.++...+ ..|++ ++|.|..+
T Consensus 162 Vi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~-~~~Pl~~~V~k~~~d~----------~~G~i-~~gRV~sG 229 (607)
T PRK10218 162 IVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVD-LDGPFQMQISQLDYNS----------YVGVI-GIGRIKRG 229 (607)
T ss_pred EEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCC-CCCCeEEEEEeeEecC----------CCcEE-EEEEEEeC
Confidence 99999999852 111 24566777777777766532 23465 4444443321 24565 88999999
Q ss_pred eecCCcEEEEecC
Q 046721 284 NLKKGTKVHIAGA 296 (1068)
Q Consensus 284 ~L~~nqlVhIpG~ 296 (1068)
.|++|+.|.++..
T Consensus 230 ~lk~Gd~v~~~~~ 242 (607)
T PRK10218 230 KVKPNQQVTIIDS 242 (607)
T ss_pred cCcCCCEEEEecC
Confidence 9999999998766
No 42
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.64 E-value=3.6e-15 Score=158.90 Aligned_cols=141 Identities=21% Similarity=0.244 Sum_probs=98.8
Q ss_pred EEEEECCCCCChhHHHHHHHhccccC----------------------------CCCceeccEEE------EeCCCeeEE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKL----------------------------KVPEVRGPVTV------VSGKKRRLQ 123 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~----------------------------~~~tt~~~Iti------~~~~k~rl~ 123 (1068)
.|||||++|+|||||+++|+...... ...+...++|+ ....+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 38999999999999999998642100 00000122232 224577999
Q ss_pred EEeCCC--Chh-HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCc-HHHHHHHHHHHHHH
Q 046721 124 FVECPN--DIN-GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTD-KKKLRKTKQHLKHR 199 (1068)
Q Consensus 124 fIDtPG--dl~-smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~-~k~l~~vkk~Lk~~ 199 (1068)
|+|||| ++. .++.++..||++|||+|++.++..++..++..+...+.|.+|+|+||+|+... ...+..+...++..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~ 160 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAF 160 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHH
Confidence 999999 443 47888899999999999999988888777788877888878889999999752 22334444444443
Q ss_pred hcccccCCCeEEEEecccC
Q 046721 200 FGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 200 ~~~e~~~~~kVf~ISAl~g 218 (1068)
+........++|++||+++
T Consensus 161 ~~~~~~~~~~ii~iSA~~g 179 (208)
T cd04166 161 AAKLGIEDITFIPISALDG 179 (208)
T ss_pred HHHcCCCCceEEEEeCCCC
Confidence 3222223467999999987
No 43
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.64 E-value=6.2e-15 Score=148.17 Aligned_cols=150 Identities=23% Similarity=0.319 Sum_probs=101.1
Q ss_pred EEEEECCCCCChhHHHHHHHhccccCC-----CCceec-cEEEEeCC-CeeEEEEeCCCC--hh-HHHHHHHhcCEEEEE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKLK-----VPEVRG-PVTVVSGK-KRRLQFVECPND--IN-GMIDCAKFADLALLL 147 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~~-----~~tt~~-~Iti~~~~-k~rl~fIDtPGd--l~-smld~akvADlVLlV 147 (1068)
+|+|+|.+|||||||+|+|++...... ..++.. ........ ...+.|+||||. +. .+...+..||++|+|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 689999999999999999997532111 111111 11112222 568999999993 43 366678899999999
Q ss_pred EeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhc
Q 046721 148 IDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIG 227 (1068)
Q Consensus 148 IDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~ 227 (1068)
+|++.++..+..+.+..+...+.+++|+|+||+|+... ..+....+.+.+.+........+++++||+++ ..+.
T Consensus 82 ~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-----~~v~ 155 (164)
T cd04171 82 VAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE-DWLELVEEEIRELLAGTFLADAPIFPVSAVTG-----EGIE 155 (164)
T ss_pred EECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH-HHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCC-----cCHH
Confidence 99998877777777777776777448999999999753 22333444444444332224678999999865 4555
Q ss_pred chHHHH
Q 046721 228 NLAEFI 233 (1068)
Q Consensus 228 nLlR~I 233 (1068)
.+...|
T Consensus 156 ~l~~~l 161 (164)
T cd04171 156 ELKEYL 161 (164)
T ss_pred HHHHHH
Confidence 555444
No 44
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=9e-15 Score=166.61 Aligned_cols=212 Identities=21% Similarity=0.289 Sum_probs=166.5
Q ss_pred EEEEECCCCCChhHHHHHHHhccccCCCCceeccEEE----Ee--CCCeeEEEEeCCC--C-hhHHHHHHHhcCEEEEEE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTV----VS--GKKRRLQFVECPN--D-INGMIDCAKFADLALLLI 148 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti----~~--~~k~rl~fIDtPG--d-l~smld~akvADlVLlVI 148 (1068)
+|+..|+.++|||||+.+|++..+...+...+.++|+ .. ..+..++|||+|| + +.+|+.++...|.+||||
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 6889999999999999999998766555554455553 22 2366999999999 3 556999999999999999
Q ss_pred eCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcc
Q 046721 149 DASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGN 228 (1068)
Q Consensus 149 Das~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~n 228 (1068)
++.+|+..++-|+|.+|...|+++.|+|+||+|.+.+ ..+....+.+.+... +..+++|.+|+.+| +++.+
T Consensus 82 ~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~-~r~e~~i~~Il~~l~---l~~~~i~~~s~~~g-----~GI~~ 152 (447)
T COG3276 82 AADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE-ARIEQKIKQILADLS---LANAKIFKTSAKTG-----RGIEE 152 (447)
T ss_pred eCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH-HHHHHHHHHHHhhcc---cccccccccccccC-----CCHHH
Confidence 9999999999999999999999999999999999974 355555555544432 67899999999854 77888
Q ss_pred hHHHHHHhhcccccccccCCeEE-EEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCC-CeeEEeeec
Q 046721 229 LAEFISVMKFHSLSWRTSHPYIL-VDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAG-DYSLAGVTG 306 (1068)
Q Consensus 229 LlR~I~~~k~r~l~wR~~rPylL-adrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~G-dfqIk~I~~ 306 (1068)
|-..|....- ...-....|+.+ +|+++.+. +.||| |+|.+-.+.+++|+.+.+-+.| ..+|++|..
T Consensus 153 Lk~~l~~L~~-~~e~d~~~~fri~IDraFtVK----------GvGTV-VtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~ 220 (447)
T COG3276 153 LKNELIDLLE-EIERDEQKPFRIAIDRAFTVK----------GVGTV-VTGTVLSGEVKVGDKLYLSPINKEVRVRSIQA 220 (447)
T ss_pred HHHHHHHhhh-hhhhccCCceEEEEeeEEEec----------cccEE-EEeEEeeeeEEECCEEEEecCCCeEEEEeeee
Confidence 8766655442 222234457766 88888773 45775 9999999999999999988877 779999998
Q ss_pred CCCC
Q 046721 307 LADP 310 (1068)
Q Consensus 307 ~~DP 310 (1068)
..-+
T Consensus 221 ~d~d 224 (447)
T COG3276 221 HDVD 224 (447)
T ss_pred cCcc
Confidence 7644
No 45
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.63 E-value=2.3e-15 Score=172.78 Aligned_cols=144 Identities=19% Similarity=0.268 Sum_probs=112.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhc---cccCCCCceeccEE-EEeCCCeeEEEEeCCC----C---hh-----HHHHHHHh
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH---YTKLKVPEVRGPVT-VVSGKKRRLQFVECPN----D---IN-----GMIDCAKF 140 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~---~~~~~~~tt~~~It-i~~~~k~rl~fIDtPG----d---l~-----smld~akv 140 (1068)
++|||||.||||||||+|+|++. .+...+.+|+.++. ........+.+|||+| + +. .++.++..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 58999999999999999999997 46677888887665 3334456799999999 1 22 25667899
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCc
Q 046721 141 ADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGK 220 (1068)
Q Consensus 141 ADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~ 220 (1068)
||+||||+|+..|+++++.++.+.|...+.| +|+|+||+|..+... .... |++ .....+++|||.+|
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~~~kp-viLvvNK~D~~~~e~----~~~e----fys--lG~g~~~~ISA~Hg-- 150 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRRSKKP-VILVVNKIDNLKAEE----LAYE----FYS--LGFGEPVPISAEHG-- 150 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEEcccCchhhh----hHHH----HHh--cCCCCceEeehhhc--
Confidence 9999999999999999999999999977788 899999999874221 1111 222 25677899999976
Q ss_pred CCchhhcchHHHHHHh
Q 046721 221 YTKKDIGNLAEFISVM 236 (1068)
Q Consensus 221 y~~~ei~nLlR~I~~~ 236 (1068)
.++.+|+..+...
T Consensus 151 ---~Gi~dLld~v~~~ 163 (444)
T COG1160 151 ---RGIGDLLDAVLEL 163 (444)
T ss_pred ---cCHHHHHHHHHhh
Confidence 7778888666444
No 46
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.62 E-value=2.4e-14 Score=174.30 Aligned_cols=209 Identities=18% Similarity=0.204 Sum_probs=142.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc---c-----cCCCCc----eeccEEEE-----------eCCCeeEEEEeCCC--C
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY---T-----KLKVPE----VRGPVTVV-----------SGKKRRLQFVECPN--D 130 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~---~-----~~~~~t----t~~~Iti~-----------~~~k~rl~fIDtPG--d 130 (1068)
.++|+|||++++|||||+++|+... + .....+ ...++|+. .+....++|||||| +
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4789999999999999999998742 1 011110 11223321 12246899999999 4
Q ss_pred hhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCe
Q 046721 131 ING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAK 209 (1068)
Q Consensus 131 l~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~k 209 (1068)
+.. +..++..||++|||+|++.+.+.++...+..+...++| +|+|+||+|+.... ...+.+.+...+. .....
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~--~~~~~~el~~~lg---~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDLPSAD--PERVKKEIEEVIG---LDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCCccC--HHHHHHHHHHHhC---CCcce
Confidence 544 67788999999999999999988888777666678998 89999999986421 2233344444331 12246
Q ss_pred EEEEecccCCcCCchhhcchHHHHHHhhcccccccccCCe-EEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCC
Q 046721 210 LFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWRTSHPY-ILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKG 288 (1068)
Q Consensus 210 Vf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR~~rPy-lLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~n 288 (1068)
++++||++| ..+..|+..|....+.+... ...|. +++..+... ...|+ +++|.|..+.|++|
T Consensus 157 vi~vSAktG-----~GI~~Lle~I~~~lp~p~~~-~~~pl~~~V~~~~~d----------~~~G~-v~~~rV~sG~lk~G 219 (595)
T TIGR01393 157 AILASAKTG-----IGIEEILEAIVKRVPPPKGD-PDAPLKALIFDSHYD----------NYRGV-VALVRVFEGTIKPG 219 (595)
T ss_pred EEEeeccCC-----CCHHHHHHHHHHhCCCCCCC-CCCCeEEEEEEEEEe----------CCCcE-EEEEEEECCEEecC
Confidence 899999965 66778888887777766432 22354 233332221 12344 58899999999999
Q ss_pred cEEEEecCC-CeeEEeeecC
Q 046721 289 TKVHIAGAG-DYSLAGVTGL 307 (1068)
Q Consensus 289 qlVhIpG~G-dfqIk~I~~~ 307 (1068)
+.|.+...| .+.|.+|...
T Consensus 220 d~v~~~~~~~~~~v~~i~~~ 239 (595)
T TIGR01393 220 DKIRFMSTGKEYEVDEVGVF 239 (595)
T ss_pred CEEEEecCCCeeEEeEEEEe
Confidence 999876655 6788888843
No 47
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.62 E-value=6.9e-15 Score=154.18 Aligned_cols=159 Identities=20% Similarity=0.262 Sum_probs=107.8
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc-----ccC----CCCceecc----EEEE-----------eCCCeeEEEEeCCCC--
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY-----TKL----KVPEVRGP----VTVV-----------SGKKRRLQFVECPND-- 130 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~-----~~~----~~~tt~~~----Iti~-----------~~~k~rl~fIDtPGd-- 130 (1068)
..|+|+|++|+|||||+++|+... ... ...++.+. +++. ......++|+||||.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 369999999999999999999731 000 11111111 1111 012678999999994
Q ss_pred h-hHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHH----Hhccccc
Q 046721 131 I-NGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKH----RFGTELY 205 (1068)
Q Consensus 131 l-~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~----~~~~e~~ 205 (1068)
+ ..++.++..+|++|+|+|++.+...++.+++..+...+.| +++|+||+|+... .......+.+++ .+.....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~-~~~~~~~~~~~~~l~~~~~~~~~ 158 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKK-LIVVLNKIDLIPE-EERERKIEKMKKKLQKTLEKTRF 158 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECcccCCH-HHHHHHHHHHHHHHHHHHHhcCc
Confidence 3 3466778899999999999988877777666666667887 8899999999852 223333333333 2221123
Q ss_pred CCCeEEEEecccCCcCCchhhcchHHHHHHhhccccc
Q 046721 206 HGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLS 242 (1068)
Q Consensus 206 ~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~ 242 (1068)
.+.++|++||+++ ..+..|...|..+.+.|+.
T Consensus 159 ~~~~vi~iSa~~g-----~gi~~L~~~l~~~~~~~~~ 190 (192)
T cd01889 159 KNSPIIPVSAKPG-----GGEAELGKDLNNLIVLPLI 190 (192)
T ss_pred CCCCEEEEeccCC-----CCHHHHHHHHHhccccccc
Confidence 4678999999855 7778888888887776653
No 48
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.61 E-value=5e-14 Score=170.95 Aligned_cols=211 Identities=18% Similarity=0.215 Sum_probs=134.9
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCC--CCcee--ccEEEEeCCCeeEEEEeCCC--ChhHH-HHHHHhcCEEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLK--VPEVR--GPVTVVSGKKRRLQFVECPN--DINGM-IDCAKFADLALLL 147 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~--~~tt~--~~Iti~~~~k~rl~fIDtPG--dl~sm-ld~akvADlVLlV 147 (1068)
.|++|+|+|++|+|||||+++|.+...... ...|. +..++......+++|+|||| +|..+ ...+..+|++|||
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILV 165 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLV 165 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEE
Confidence 456899999999999999999987632111 11111 11112222334899999999 45554 4578999999999
Q ss_pred EeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHH--hcccccCCCeEEEEecccCCcCCchh
Q 046721 148 IDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHR--FGTELYHGAKLFKLSGLIQGKYTKKD 225 (1068)
Q Consensus 148 IDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~--~~~e~~~~~kVf~ISAl~g~~y~~~e 225 (1068)
+|++.+...++.+++..+...++| +|+|+||+|+... ....+.+.+... ....+....++|++||++| .+
T Consensus 166 Vda~dgv~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~--~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktG-----eG 237 (587)
T TIGR00487 166 VAADDGVMPQTIEAISHAKAANVP-IIVAINKIDKPEA--NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTG-----DG 237 (587)
T ss_pred EECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcccccC--CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCC-----CC
Confidence 999999999999999998889999 8999999998641 112233333221 1112233468999999976 55
Q ss_pred hcchHHHHHHhhc-ccccccccCC-eEEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCCCeeEEe
Q 046721 226 IGNLAEFISVMKF-HSLSWRTSHP-YILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAGDYSLAG 303 (1068)
Q Consensus 226 i~nLlR~I~~~k~-r~l~wR~~rP-ylLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~GdfqIk~ 303 (1068)
+..|+..|..... ..+......| ...+.++... +..|+ +++|.|..+.|++|+.+.+.. .--+|+.
T Consensus 238 I~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~----------~g~G~-v~~~~V~~GtL~~Gd~iv~~~-~~~kVr~ 305 (587)
T TIGR00487 238 IDELLDMILLQSEVEELKANPNGQASGVVIEAQLD----------KGRGP-VATVLVQSGTLRVGDIVVVGA-AYGRVRA 305 (587)
T ss_pred hHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEe----------CCCcE-EEEEEEEeCEEeCCCEEEECC-CccEEEE
Confidence 6666665543211 1111111122 2344333322 22454 589999999999999987643 2235555
Q ss_pred ee
Q 046721 304 VT 305 (1068)
Q Consensus 304 I~ 305 (1068)
|.
T Consensus 306 l~ 307 (587)
T TIGR00487 306 MI 307 (587)
T ss_pred EE
Confidence 54
No 49
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.61 E-value=3.9e-14 Score=160.76 Aligned_cols=208 Identities=17% Similarity=0.145 Sum_probs=148.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccc--------------cCCCCceeccEEEEe------CCCeeEEEEeCCC--Chh
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYT--------------KLKVPEVRGPVTVVS------GKKRRLQFVECPN--DIN 132 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~--------------~~~~~tt~~~Iti~~------~~k~rl~fIDtPG--dl~ 132 (1068)
+-++||||.|.++|||||+..|+.+.. +.... ...+|||.. ++..+|.+||||| ||.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlE-kERGITILaKnTav~~~~~~INIvDTPGHADFG 82 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLE-KERGITILAKNTAVNYNGTRINIVDTPGHADFG 82 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchh-hhcCcEEEeccceeecCCeEEEEecCCCcCCcc
Confidence 357899999999999999999998631 11111 234688654 4688999999999 777
Q ss_pred H-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcc----cccCC
Q 046721 133 G-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGT----ELYHG 207 (1068)
Q Consensus 133 s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~----e~~~~ 207 (1068)
. +-+.++.+|.|||||||.+|..+||..+|.-+.++|++ .|+|+||+|... .....+...+-..|.. .-.-+
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~-PIVVvNKiDrp~--Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLK-PIVVINKIDRPD--ARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCC-cEEEEeCCCCCC--CCHHHHHHHHHHHHHHhCCChhhCC
Confidence 5 88889999999999999999999999999999999998 588999999874 2223444444443422 11236
Q ss_pred CeEEEEecccCCcC--C---chhhcchHHHHHHhhcccccccccCCeEEEEeEEecCCCccccccCCCCceEEEEEEEEe
Q 046721 208 AKLFKLSGLIQGKY--T---KKDIGNLAEFISVMKFHSLSWRTSHPYILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRG 282 (1068)
Q Consensus 208 ~kVf~ISAl~g~~y--~---~~ei~nLlR~I~~~k~r~l~wR~~rPylLadrved~~~~~~i~~~~~~~gtl~VtGyVRG 282 (1068)
.+++|.||+.|+.- + ......|...|....|.|. -....|+.+....-+.. + -.|.+ ..|.|.-
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~-~~~d~PlQ~qvt~Ldyn--------~-y~GrI-gigRi~~ 228 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK-GDLDEPLQMQVTQLDYN--------S-YVGRI-GIGRIFR 228 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC-CCCCCCeEEEEEeeccc--------c-cccee-EEEEEec
Confidence 78999999988542 2 2334445566767777666 34456875554433331 1 24555 5678877
Q ss_pred eeecCCcEEEEecCC
Q 046721 283 CNLKKGTKVHIAGAG 297 (1068)
Q Consensus 283 ~~L~~nqlVhIpG~G 297 (1068)
+.+++||.|.+...+
T Consensus 229 G~vk~~q~V~~i~~~ 243 (603)
T COG1217 229 GTVKPNQQVALIKSD 243 (603)
T ss_pred CcccCCCeEEEEcCC
Confidence 779999999887744
No 50
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=3.5e-14 Score=155.65 Aligned_cols=207 Identities=18% Similarity=0.293 Sum_probs=150.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc----cCCCCceeccEEEEe---------------CCCeeEEEEeCCCC---hhHH
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT----KLKVPEVRGPVTVVS---------------GKKRRLQFVECPND---INGM 134 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~----~~~~~tt~~~Iti~~---------------~~k~rl~fIDtPGd---l~sm 134 (1068)
.+|+|+|+.++|||||.++|..-.. ...++.+..+||+-. +..-+++||||||. +..+
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRti 87 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRTI 87 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHHH
Confidence 6799999999999999999976421 123333444566311 12446799999993 4568
Q ss_pred HHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcH---HHHHHHHHHHHHHhccc-ccCCCeE
Q 046721 135 IDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDK---KKLRKTKQHLKHRFGTE-LYHGAKL 210 (1068)
Q Consensus 135 ld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~---k~l~~vkk~Lk~~~~~e-~~~~~kV 210 (1068)
+.++.+.|+.++|||+..|...++.++|-+-+ .-+++.|+|+||+|..... ..+.+..+++++-+.+. |....+|
T Consensus 88 iggaqiiDlm~lviDv~kG~QtQtAEcLiig~-~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI 166 (522)
T KOG0461|consen 88 IGGAQIIDLMILVIDVQKGKQTQTAECLIIGE-LLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPI 166 (522)
T ss_pred HhhhheeeeeeEEEehhcccccccchhhhhhh-hhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCce
Confidence 88999999999999999999999999886544 3456689999999998642 23445555555555444 4455999
Q ss_pred EEEecccCCcCCchhhcchHHHHHHhhcccccccccCCeEEEE-eEEecCCCccccccCCCCceEEEEEEEEeeeecCCc
Q 046721 211 FKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWRTSHPYILVD-RFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGT 289 (1068)
Q Consensus 211 f~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR~~rPylLad-rved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nq 289 (1068)
+++||..| .+.++.+.+|...|....+.|.. ....|++++. .+..+ ++.||| +||.|-.+.++.|.
T Consensus 167 ~~vsa~~G-~~~~~~i~eL~e~l~s~if~P~R-d~~gpflm~vDHCF~I----------KGQGTV-~TGTvl~G~~~ln~ 233 (522)
T KOG0461|consen 167 VEVSAADG-YFKEEMIQELKEALESRIFEPKR-DEEGPFLMAVDHCFAI----------KGQGTV-LTGTVLRGVLRLNT 233 (522)
T ss_pred eEEecCCC-ccchhHHHHHHHHHHHhhcCCCc-CCCCCeEEEeeeeEEe----------ccCceE-EeeeEEEeEEecCc
Confidence 99999987 44778888888888777766653 3345887665 44444 345675 89988888899999
Q ss_pred EEEEecCC
Q 046721 290 KVHIAGAG 297 (1068)
Q Consensus 290 lVhIpG~G 297 (1068)
.|.+|-.+
T Consensus 234 ~iE~PAL~ 241 (522)
T KOG0461|consen 234 EIEFPALN 241 (522)
T ss_pred EEeecccc
Confidence 99999654
No 51
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.61 E-value=6.9e-14 Score=170.00 Aligned_cols=220 Identities=20% Similarity=0.272 Sum_probs=136.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccC-CCCc-ee-ccEEEEe--------CC----------CeeEEEEeCCC--Chh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPE-VR-GPVTVVS--------GK----------KRRLQFVECPN--DIN 132 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~t-t~-~~Iti~~--------~~----------k~rl~fIDtPG--dl~ 132 (1068)
|++|+|+|++|+|||||+++|.+..... .... +. -+.+... +. ...++|+|||| ++.
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~ 85 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT 85 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence 5689999999999999999998764211 1110 00 0011111 00 01379999999 455
Q ss_pred H-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHH--------------------HHHH
Q 046721 133 G-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKK--------------------KLRK 191 (1068)
Q Consensus 133 s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k--------------------~l~~ 191 (1068)
. +...+..+|++|||+|++.|+..++++++..+...++| +|+|+||+|+..... .+..
T Consensus 86 ~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vp-iIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~ 164 (586)
T PRK04004 86 NLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTP-FVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEE 164 (586)
T ss_pred HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHH
Confidence 5 44567899999999999999999999999999889999 899999999862111 1111
Q ss_pred HHHHHHHHhc------------ccccCCCeEEEEecccCCcCCchhhcchHHHHHHh----hcccccccccCC-eEEEEe
Q 046721 192 TKQHLKHRFG------------TELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVM----KFHSLSWRTSHP-YILVDR 254 (1068)
Q Consensus 192 vkk~Lk~~~~------------~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~----k~r~l~wR~~rP-ylLadr 254 (1068)
....+...+. ..+....+++++||++| .++.+|+..+... .+.++......| .+.+..
T Consensus 165 ~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tG-----eGi~dLl~~i~~~~~~~l~~~l~~~~~~~~~~~V~e 239 (586)
T PRK04004 165 KLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTG-----EGIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLE 239 (586)
T ss_pred HHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCC-----CChHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEE
Confidence 1112212221 12345678999999976 4455555444221 112233222233 233333
Q ss_pred EEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCCCe---eEEeeecCCCCCCCCh
Q 046721 255 FEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAGDY---SLAGVTGLADPCPLPS 315 (1068)
Q Consensus 255 ved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~Gdf---qIk~I~~~~DP~pl~~ 315 (1068)
+... +..|+ +++|.|..+.|++|+.|.+.+.++. +|+.|. +|-|+.+
T Consensus 240 v~~~----------~g~G~-v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~---~~~~~~e 289 (586)
T PRK04004 240 VKEE----------RGLGT-TIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALL---KPRPLDE 289 (586)
T ss_pred EEEe----------CCCce-EEEEEEEcCEEECCCEEEECcCCCcceEEEEEEe---cCcchhh
Confidence 3222 22455 5899999999999999988776653 555554 4444443
No 52
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.60 E-value=4.9e-14 Score=171.80 Aligned_cols=209 Identities=21% Similarity=0.230 Sum_probs=142.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc---cc-----CCCC----ceeccEEEE-----------eCCCeeEEEEeCCC--C
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY---TK-----LKVP----EVRGPVTVV-----------SGKKRRLQFVECPN--D 130 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~---~~-----~~~~----tt~~~Iti~-----------~~~k~rl~fIDtPG--d 130 (1068)
.++|+|||+.++|||||+.+|+... .. .... +...++|+. .+....++|||||| +
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 5799999999999999999998631 00 0000 011223321 12357899999999 4
Q ss_pred hhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCe
Q 046721 131 ING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAK 209 (1068)
Q Consensus 131 l~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~k 209 (1068)
+.. +..++..||++|||+|++.+++.++...+..+...++| +|+|+||+|+... ....+.+.+...+. .....
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl~~a--~~~~v~~ei~~~lg---~~~~~ 160 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDLPAA--DPERVKQEIEDVIG---IDASD 160 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCcc--cHHHHHHHHHHHhC---CCcce
Confidence 544 66778999999999999999988888877777778999 8999999998642 22333444444331 12235
Q ss_pred EEEEecccCCcCCchhhcchHHHHHHhhcccccccccCCe-EEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCC
Q 046721 210 LFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWRTSHPY-ILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKG 288 (1068)
Q Consensus 210 Vf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR~~rPy-lLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~n 288 (1068)
++++||++| .++..|+..|....+.|.. ....|. +++-..... ...|. +++|.|..+.|++|
T Consensus 161 vi~iSAktG-----~GI~~Ll~~I~~~lp~P~~-~~~~pl~~~Vfd~~~d----------~~~G~-v~~~rV~sG~Lk~G 223 (600)
T PRK05433 161 AVLVSAKTG-----IGIEEVLEAIVERIPPPKG-DPDAPLKALIFDSWYD----------NYRGV-VVLVRVVDGTLKKG 223 (600)
T ss_pred EEEEecCCC-----CCHHHHHHHHHHhCccccC-CCCCCceEEEEEEEec----------CCCce-EEEEEEEcCEEecC
Confidence 899999965 6677888888777766543 223343 233222221 12344 58899999999999
Q ss_pred cEEEEecCC-CeeEEeeecC
Q 046721 289 TKVHIAGAG-DYSLAGVTGL 307 (1068)
Q Consensus 289 qlVhIpG~G-dfqIk~I~~~ 307 (1068)
+.|.+...| .+.+.+|...
T Consensus 224 d~i~~~~~~~~~~V~~i~~~ 243 (600)
T PRK05433 224 DKIKMMSTGKEYEVDEVGVF 243 (600)
T ss_pred CEEEEecCCceEEEEEeecc
Confidence 999766544 6888888743
No 53
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.60 E-value=6.6e-14 Score=173.73 Aligned_cols=198 Identities=22% Similarity=0.271 Sum_probs=130.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEE------EEeCCCeeEEEEeCCC--ChhHH-HHHHHhcCEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVT------VVSGKKRRLQFVECPN--DINGM-IDCAKFADLA 144 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~It------i~~~~k~rl~fIDtPG--dl~sm-ld~akvADlV 144 (1068)
..|++|+|+|++|||||||+++|.+...... ..+.|| .+...+.+|+|||||| +|..| ...+..+|++
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~---e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG---EAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccc---ccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 4577999999999999999999987532111 011222 1223467899999999 46664 4578999999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHH--hcccccCCCeEEEEecccCCcCC
Q 046721 145 LLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHR--FGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 145 LlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~--~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
|||+|++.|+..++.+++..+...++| +|+|+||+|+... ....+...|... +...+....++|++||++|
T Consensus 365 ILVVdAddGv~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a--~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG---- 437 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDKPGA--NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG---- 437 (787)
T ss_pred EEEEECCCCCCHhHHHHHHHHHhcCCc-EEEEEECcccccc--CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCC----
Confidence 999999999999999999999999999 8999999999642 123333333321 1122234578999999976
Q ss_pred chhhcchHHHHHHhhc-ccccccccCC-eEEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEE
Q 046721 223 KKDIGNLAEFISVMKF-HSLSWRTSHP-YILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHI 293 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~k~-r~l~wR~~rP-ylLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhI 293 (1068)
.++..|+..|..... ..+.-....| -..+..... .+..|+ +++|.|..+.|++|+.+.+
T Consensus 438 -~GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~----------dkg~G~-v~~v~V~sGtLk~Gd~vv~ 498 (787)
T PRK05306 438 -EGIDELLEAILLQAEVLELKANPDRPARGTVIEAKL----------DKGRGP-VATVLVQNGTLKVGDIVVA 498 (787)
T ss_pred -CCchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEE----------cCCCeE-EEEEEEecCeEecCCEEEE
Confidence 456666655543211 1111111122 222222211 112344 5899999999999998876
No 54
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.60 E-value=2.7e-15 Score=152.99 Aligned_cols=140 Identities=20% Similarity=0.323 Sum_probs=94.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCCCeeEEEEeCCC--ChhH-------HHHHH--HhcC
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGKKRRLQFVECPN--DING-------MIDCA--KFAD 142 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~k~rl~fIDtPG--dl~s-------mld~a--kvAD 142 (1068)
+.||++|.||+|||||+|+|++.. ++..+.+|..... .+......+.|+|+|| ++.+ ..+.+ ...|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 469999999999999999999984 3344444443333 3344568999999999 3321 22333 5799
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 143 LALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 143 lVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
+||+|+||+. + .....++..+...|+| +|+|+||+|.+.. +.+.-....|.+.+ +.+++++||.++
T Consensus 81 ~ii~VvDa~~-l-~r~l~l~~ql~e~g~P-~vvvlN~~D~a~~-~g~~id~~~Ls~~L------g~pvi~~sa~~~---- 146 (156)
T PF02421_consen 81 LIIVVVDATN-L-ERNLYLTLQLLELGIP-VVVVLNKMDEAER-KGIEIDAEKLSERL------GVPVIPVSARTG---- 146 (156)
T ss_dssp EEEEEEEGGG-H-HHHHHHHHHHHHTTSS-EEEEEETHHHHHH-TTEEE-HHHHHHHH------TS-EEEEBTTTT----
T ss_pred EEEEECCCCC-H-HHHHHHHHHHHHcCCC-EEEEEeCHHHHHH-cCCEECHHHHHHHh------CCCEEEEEeCCC----
Confidence 9999999986 3 3456778888899999 8999999999852 22222234455555 789999999855
Q ss_pred chhhcchHH
Q 046721 223 KKDIGNLAE 231 (1068)
Q Consensus 223 ~~ei~nLlR 231 (1068)
.++..|..
T Consensus 147 -~g~~~L~~ 154 (156)
T PF02421_consen 147 -EGIDELKD 154 (156)
T ss_dssp -BTHHHHHH
T ss_pred -cCHHHHHh
Confidence 55555543
No 55
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.60 E-value=6.4e-14 Score=172.50 Aligned_cols=213 Identities=20% Similarity=0.256 Sum_probs=134.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCC-C-Ccee--ccEEEEe---CCCeeEEEEeCCC--ChhHH-HHHHHhcCE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLK-V-PEVR--GPVTVVS---GKKRRLQFVECPN--DINGM-IDCAKFADL 143 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~-~-~tt~--~~Iti~~---~~k~rl~fIDtPG--dl~sm-ld~akvADl 143 (1068)
..|++|+|+|++|||||||+++|++...... . ..+. +.+.+.. .....|+|+|||| .|..| ...+..||+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4567999999999999999999987632111 0 0110 1111111 2357999999999 46554 457899999
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHH--hcccccCCCeEEEEecccCCcC
Q 046721 144 ALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHR--FGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 144 VLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~--~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
+|||+|++.++..++.+++..+...++| +|+|+||+|+... ....+.+.|... +...+....+++++||++|
T Consensus 322 aILVVDA~dGv~~QT~E~I~~~k~~~iP-iIVViNKiDl~~~--~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG--- 395 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAINYIQAANVP-IIVAINKIDKANA--NTERIKQQLAKYNLIPEKWGGDTPMIPISASQG--- 395 (742)
T ss_pred EEEEEECcCCCChhhHHHHHHHHhcCce-EEEEEECCCcccc--CHHHHHHHHHHhccchHhhCCCceEEEEECCCC---
Confidence 9999999999999999999999999999 8999999998742 223344444322 1112233578999999966
Q ss_pred CchhhcchHHHHHHhhcc-cccccccCCeEEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCCCee
Q 046721 222 TKKDIGNLAEFISVMKFH-SLSWRTSHPYILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAGDYS 300 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~~k~r-~l~wR~~rPylLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~Gdfq 300 (1068)
.++..|+..|...... .+......|. .+.-++..-+ ...|+ +++|.|..+.|++|+.+.+... --.
T Consensus 396 --~GIdeLle~I~~l~e~~~lk~~~~~~~-~g~V~e~~iD--------~~~G~-V~~~~V~sGtLr~GD~vv~g~~-~gk 462 (742)
T CHL00189 396 --TNIDKLLETILLLAEIEDLKADPTQLA-QGIILEAHLD--------KTKGP-VATILVQNGTLHIGDIIVIGTS-YAK 462 (742)
T ss_pred --CCHHHHHHhhhhhhhhhcccCCCCCCc-eEEEEEEEEc--------CCCce-EEEEEEEcCEEecCCEEEECCc-ceE
Confidence 5666666655443211 1111111221 1111111111 12344 5888999888999999865442 224
Q ss_pred EEeee
Q 046721 301 LAGVT 305 (1068)
Q Consensus 301 Ik~I~ 305 (1068)
|..|.
T Consensus 463 Vr~m~ 467 (742)
T CHL00189 463 IRGMI 467 (742)
T ss_pred EEEEE
Confidence 44443
No 56
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=2.9e-14 Score=156.59 Aligned_cols=216 Identities=21% Similarity=0.262 Sum_probs=157.6
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhccc-------------cCCCCceeccEEEEe------CCCeeEEEEeCCC--C
Q 046721 72 GEPPPYVVVVQGPPQVGKSLLIKCLIKHYT-------------KLKVPEVRGPVTVVS------GKKRRLQFVECPN--D 130 (1068)
Q Consensus 72 ~~~pP~~VaVVG~pnvGKSTLIn~L~~~~~-------------~~~~~tt~~~Iti~~------~~k~rl~fIDtPG--d 130 (1068)
...|..+|+.|||.++|||||..+|+.... ...+.+...+|||.. ..++.+.-+|||| |
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 456778999999999999999999987421 112222335677532 3588999999999 4
Q ss_pred h-hHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccC--C
Q 046721 131 I-NGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYH--G 207 (1068)
Q Consensus 131 l-~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~--~ 207 (1068)
+ -.||..+...|.+||||.|+.|..+|+.++|-+++.-|++++++.+||.|++.+++.+.-+.-.+++.+....++ .
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~ 209 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDN 209 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 4 469999999999999999999999999999999999999999999999999977777776767777776655554 4
Q ss_pred CeEEEEecccC-----CcCCchhhcchHHHHHHhhcccccccccCCeEEEE-eEEecCCCccccccCCCCceEEEEEEEE
Q 046721 208 AKLFKLSGLIQ-----GKYTKKDIGNLAEFISVMKFHSLSWRTSHPYILVD-RFEDVTPPERVHVNNKCDRNVAIYGYLR 281 (1068)
Q Consensus 208 ~kVf~ISAl~g-----~~y~~~ei~nLlR~I~~~k~r~l~wR~~rPylLad-rved~~~~~~i~~~~~~~gtl~VtGyVR 281 (1068)
.+|+.=||+.. .....+-|..|+..+..-.+.|.. ....||++.. .+..++ +.|| +|+|.|.
T Consensus 210 ~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R-~~~~pFl~pie~vfsI~----------GRGT-VvtGrlE 277 (449)
T KOG0460|consen 210 TPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPER-DLDKPFLLPIEDVFSIP----------GRGT-VVTGRLE 277 (449)
T ss_pred CCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccc-ccCCCceeehhheeeec----------CCce-EEEEEEe
Confidence 67887666643 112223344455444443444432 2345888773 333332 2455 5999999
Q ss_pred eeeecCCcEEEEecCCCe
Q 046721 282 GCNLKKGTKVHIAGAGDY 299 (1068)
Q Consensus 282 G~~L~~nqlVhIpG~Gdf 299 (1068)
-+.|+.|..+.|.|.+--
T Consensus 278 RG~lKkG~e~eivG~~~~ 295 (449)
T KOG0460|consen 278 RGVLKKGDEVEIVGHNKT 295 (449)
T ss_pred ecccccCCEEEEeccCcc
Confidence 999999999999998854
No 57
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=7.9e-14 Score=162.69 Aligned_cols=225 Identities=24% Similarity=0.329 Sum_probs=155.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc---------------------------c-cCCCCceeccEEE------EeCCCe
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY---------------------------T-KLKVPEVRGPVTV------VSGKKR 120 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~---------------------------~-~~~~~tt~~~Iti------~~~~k~ 120 (1068)
+-...+|+|+.++|||||+..|+... + ..+-.+...+||+ +..+..
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 44678899999999999999997521 0 0111111234553 224678
Q ss_pred eEEEEeCCC--ChhH-HHHHHHhcCEEEEEEeCCCC-----Cc--hhHHHHHHHHHhCCCCcEEEEEeCCCcCCc-HHHH
Q 046721 121 RLQFVECPN--DING-MIDCAKFADLALLLIDASHG-----FE--METFEFLNLMQNHGLPNVMGVLTHLDKFTD-KKKL 189 (1068)
Q Consensus 121 rl~fIDtPG--dl~s-mld~akvADlVLlVIDas~g-----~e--~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~-~k~l 189 (1068)
.++++|+|| +|.. |+..+..||+.+|||||+.+ |+ .++.+++.+|+..|+..+|+++||+|++.. +..+
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF 335 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDRF 335 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHHH
Confidence 999999999 6765 99999999999999999843 33 477899999999999999999999999973 4557
Q ss_pred HHHHHHHHHHhc-ccc--cCCCeEEEEecccCCcCCch-h---------hcchHHHHHHhhcccccccccCCeEEEEeEE
Q 046721 190 RKTKQHLKHRFG-TEL--YHGAKLFKLSGLIQGKYTKK-D---------IGNLAEFISVMKFHSLSWRTSHPYILVDRFE 256 (1068)
Q Consensus 190 ~~vkk~Lk~~~~-~e~--~~~~kVf~ISAl~g~~y~~~-e---------i~nLlR~I~~~k~r~l~wR~~rPylLadrve 256 (1068)
..++..|..++. ... -...+++|+||+.|...... . -..|+..|...++..-. -..|+.+...
T Consensus 336 ~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~--~~kPl~ltIs-- 411 (603)
T KOG0458|consen 336 EEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERP--IDKPLRLTIS-- 411 (603)
T ss_pred HHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCc--ccCCeEEEhh--
Confidence 788888887772 222 24558999999988221111 1 12233444332222111 2237766632
Q ss_pred ecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEE-ecCCCeeEEeeecCCCCC
Q 046721 257 DVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHI-AGAGDYSLAGVTGLADPC 311 (1068)
Q Consensus 257 d~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhI-pG~GdfqIk~I~~~~DP~ 311 (1068)
++... + .. .++|+|.|..+.+..||.+.| ++.-+++|+.|..-..||
T Consensus 412 di~~~------~-~~-~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~ 459 (603)
T KOG0458|consen 412 DIYPL------P-SS-GVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPK 459 (603)
T ss_pred heeec------C-CC-eeEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcc
Confidence 33210 1 12 279999999999999999975 778899999998765554
No 58
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.58 E-value=4.6e-14 Score=165.89 Aligned_cols=153 Identities=20% Similarity=0.354 Sum_probs=114.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEEE-EeCCCeeEEEEeCCCC---------hh-----HHH
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVTV-VSGKKRRLQFVECPND---------IN-----GMI 135 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~Iti-~~~~k~rl~fIDtPGd---------l~-----sml 135 (1068)
..+..|+|+|.+|+|||||+|+|++.. ++..+.++...+.. ....+..++++||||- +. .++
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 346789999999999999999999863 44555666655542 2334568999999992 11 235
Q ss_pred HHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEec
Q 046721 136 DCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSG 215 (1068)
Q Consensus 136 d~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISA 215 (1068)
.++..||++|+|+|++.++..++..++..+...|.| +|+|+||+|++.+...+..+.+.+...+ ....+.+++++||
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~vi~~SA 326 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLRIAGLILEAGKA-LVIVVNKWDLVKDEKTREEFKKELRRKL--PFLDFAPIVFISA 326 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEECcccCCCHHHHHHHHHHHHHhc--ccCCCCceEEEeC
Confidence 677899999999999999999999999988888998 8999999999843445556666666554 2235689999999
Q ss_pred ccCCcCCchhhcchHHHHH
Q 046721 216 LIQGKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 216 l~g~~y~~~ei~nLlR~I~ 234 (1068)
++| ..+..+...+.
T Consensus 327 ~~g-----~~v~~l~~~i~ 340 (429)
T TIGR03594 327 LTG-----QGVDKLLDAID 340 (429)
T ss_pred CCC-----CCHHHHHHHHH
Confidence 976 44555554443
No 59
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.57 E-value=6e-14 Score=165.35 Aligned_cols=151 Identities=22% Similarity=0.356 Sum_probs=113.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEEE-EeCCCeeEEEEeCCCC---------hh-----HHH
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVTV-VSGKKRRLQFVECPND---------IN-----GMI 135 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~Iti-~~~~k~rl~fIDtPGd---------l~-----sml 135 (1068)
..+..|+|+|++|+|||||+|+|++.. ++....+++..+.. ....+..+.++||||. +. .++
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 357899999999999999999999863 34455556555442 3345678999999992 11 245
Q ss_pred HHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEec
Q 046721 136 DCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSG 215 (1068)
Q Consensus 136 d~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISA 215 (1068)
.++..||++|+|+|++.++..++..++..+...|.| +|+|+||+|+.. ......+.+.+...+. .....+++++||
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~-~ivv~NK~Dl~~-~~~~~~~~~~~~~~l~--~~~~~~i~~~SA 326 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLRIAGLALEAGRA-LVIVVNKWDLVD-EKTMEEFKKELRRRLP--FLDYAPIVFISA 326 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCc-EEEEEECccCCC-HHHHHHHHHHHHHhcc--cccCCCEEEEeC
Confidence 678899999999999999999999999998888998 889999999985 3345555666655542 235789999999
Q ss_pred ccCCcCCchhhcchHHHH
Q 046721 216 LIQGKYTKKDIGNLAEFI 233 (1068)
Q Consensus 216 l~g~~y~~~ei~nLlR~I 233 (1068)
+++ ..+..+...+
T Consensus 327 ~~~-----~gv~~l~~~i 339 (435)
T PRK00093 327 LTG-----QGVDKLLEAI 339 (435)
T ss_pred CCC-----CCHHHHHHHH
Confidence 976 4455555444
No 60
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.56 E-value=1e-13 Score=142.53 Aligned_cols=153 Identities=22% Similarity=0.309 Sum_probs=105.1
Q ss_pred EEEEECCCCCChhHHHHHHHhccccCCC-C------------ceeccEE------EEeCCCeeEEEEeCCCC--hhH-HH
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKLKV-P------------EVRGPVT------VVSGKKRRLQFVECPND--ING-MI 135 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~~~-~------------tt~~~It------i~~~~k~rl~fIDtPGd--l~s-ml 135 (1068)
.|+|+|.+|+|||||+|+|++....... . .....++ ........++|+||||. +.. ..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 3899999999999999999986322111 0 0001111 12233678999999993 433 55
Q ss_pred HHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccc-----------c
Q 046721 136 DCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTE-----------L 204 (1068)
Q Consensus 136 d~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e-----------~ 204 (1068)
.++..+|++|+|+|++.+......+++..+...+.| +++|+||+|+..+ ..+......++..+... .
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-i~iv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKIDRVGE-EDLEEVLREIKELLGLIGFISTKEEGTRN 158 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCC-eEEEEECCCCcch-hcHHHHHHHHHHHHccccccchhhhhccc
Confidence 667899999999999988877777888887777888 8999999999862 23344444444443221 1
Q ss_pred cCCCeEEEEecccCCcCCchhhcchHHHHHHhh
Q 046721 205 YHGAKLFKLSGLIQGKYTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 205 ~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k 237 (1068)
....++|++||+.+ .++.++...|....
T Consensus 159 ~~~~~v~~~Sa~~g-----~gi~~l~~~l~~~l 186 (189)
T cd00881 159 GLLVPIVPGSALTG-----IGVEELLEAIVEHL 186 (189)
T ss_pred CCcceEEEEecccC-----cCHHHHHHHHHhhC
Confidence 34788999999865 45666666665443
No 61
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.56 E-value=1.2e-13 Score=139.21 Aligned_cols=150 Identities=20% Similarity=0.346 Sum_probs=104.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCC---------h-----hHHHHH
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPND---------I-----NGMIDC 137 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd---------l-----~smld~ 137 (1068)
|..|+++|.+|+|||||+|+|++.. ......++...+. ........+++|||||. + ..++..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 6789999999999999999999863 2223333333332 22234567999999992 1 123445
Q ss_pred HHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcH-HHHHHHHHHHHHHhcccccCCCeEEEEecc
Q 046721 138 AKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDK-KKLRKTKQHLKHRFGTELYHGAKLFKLSGL 216 (1068)
Q Consensus 138 akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~-k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl 216 (1068)
+..+|++|+|+|++.+.......++..+...+.| +++|+||+|+.... .......+.+++.+. .....++|++||+
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~ 158 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLRIAGLILEEGKA-LVIVVNKWDLVEKDSKTMKEFKKEIRRKLP--FLDYAPIVFISAL 158 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCC-EEEEEeccccCCccHHHHHHHHHHHHhhcc--cccCCceEEEecc
Confidence 6789999999999988877777777777778887 89999999998642 334455555555432 1245789999998
Q ss_pred cCCcCCchhhcchHHHH
Q 046721 217 IQGKYTKKDIGNLAEFI 233 (1068)
Q Consensus 217 ~g~~y~~~ei~nLlR~I 233 (1068)
.+ .++..+...+
T Consensus 159 ~~-----~~i~~~~~~l 170 (174)
T cd01895 159 TG-----QGVDKLFDAI 170 (174)
T ss_pred CC-----CCHHHHHHHH
Confidence 65 4455555544
No 62
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.56 E-value=9.7e-14 Score=145.78 Aligned_cols=160 Identities=20% Similarity=0.204 Sum_probs=105.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc---cccCC-----CCc-----eeccEE------EEeCCCeeEEEEeCCC--ChhH-
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH---YTKLK-----VPE-----VRGPVT------VVSGKKRRLQFVECPN--DING- 133 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~---~~~~~-----~~t-----t~~~It------i~~~~k~rl~fIDtPG--dl~s- 133 (1068)
.+.|+|+|.+++|||||+++|+.. ..... +.+ ...+++ .+......+.|+|||| ++..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 468999999999999999999963 21110 000 001122 1234577899999999 4555
Q ss_pred HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcc---c-ccCCCe
Q 046721 134 MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGT---E-LYHGAK 209 (1068)
Q Consensus 134 mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~---e-~~~~~k 209 (1068)
+...+..+|++|+|+|++.+...+...++..+...++| +++|+||+|+.... .......+...+.. . -..+.+
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRPDAR--PEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC--HHHHHHHHHHHHHHhCCccccCccC
Confidence 55667999999999999987766666777777778999 78899999997421 12223333332211 1 112568
Q ss_pred EEEEecccCC-----cCCchhhcchHHHHHHhhc
Q 046721 210 LFKLSGLIQG-----KYTKKDIGNLAEFISVMKF 238 (1068)
Q Consensus 210 Vf~ISAl~g~-----~y~~~ei~nLlR~I~~~k~ 238 (1068)
++++||++|. .-+..++..|+..|.+..|
T Consensus 159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (194)
T cd01891 159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP 192 (194)
T ss_pred EEEeehhccccccccccchhhHHHHHHHHHhcCC
Confidence 9999999872 2244566677766655443
No 63
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.56 E-value=1.1e-13 Score=140.14 Aligned_cols=150 Identities=23% Similarity=0.271 Sum_probs=101.4
Q ss_pred EEEEECCCCCChhHHHHHHHhccccCC--CCceec-cEEEEeC---CCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKLK--VPEVRG-PVTVVSG---KKRRLQFVECPND--INGMID-CAKFADLALLLI 148 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~~--~~tt~~-~Iti~~~---~k~rl~fIDtPGd--l~smld-~akvADlVLlVI 148 (1068)
+|+|+|++|+|||||+|+|++...... ...+.. .+..... ....++|+||||. +..+.. .+..||++|+|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 599999999999999999998643221 111111 1111222 3678999999994 444433 568999999999
Q ss_pred eCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcc---cccCCCeEEEEecccCCcCCchh
Q 046721 149 DASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGT---ELYHGAKLFKLSGLIQGKYTKKD 225 (1068)
Q Consensus 149 Das~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~---e~~~~~kVf~ISAl~g~~y~~~e 225 (1068)
|++.+...++.+++..+...++| +++|+||+|+.... ...+...+...... .+....+++++||+++ .+
T Consensus 82 d~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-----~g 153 (168)
T cd01887 82 AADDGVMPQTIEAIKLAKAANVP-FIVALNKIDKPNAN--PERVKNELSELGLQGEDEWGGDVQIVPTSAKTG-----EG 153 (168)
T ss_pred ECCCCccHHHHHHHHHHHHcCCC-EEEEEEceeccccc--HHHHHHHHHHhhccccccccCcCcEEEeecccC-----CC
Confidence 99988777788888888889998 89999999987421 12222222222111 1234568999999865 56
Q ss_pred hcchHHHHHH
Q 046721 226 IGNLAEFISV 235 (1068)
Q Consensus 226 i~nLlR~I~~ 235 (1068)
+..+...|..
T Consensus 154 i~~l~~~l~~ 163 (168)
T cd01887 154 IDDLLEAILL 163 (168)
T ss_pred HHHHHHHHHH
Confidence 6677666644
No 64
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.55 E-value=7.2e-14 Score=162.28 Aligned_cols=149 Identities=15% Similarity=0.126 Sum_probs=101.1
Q ss_pred EEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCC-CeeEEEEeCCCC---------hh-HHHHHHHhcCE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGK-KRRLQFVECPND---------IN-GMIDCAKFADL 143 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~-k~rl~fIDtPGd---------l~-smld~akvADl 143 (1068)
-|+|||+||||||||+|+|++.. ++..++||+.++. ++... .++|+|+||||- +. .++..+..||+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 59999999999999999999863 4567788888777 44443 467999999993 22 37788899999
Q ss_pred EEEEEeCCCC----CchhHHHHHHHHHhC-----CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 144 ALLLIDASHG----FEMETFEFLNLMQNH-----GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 144 VLlVIDas~g----~e~~t~eiL~~L~~~-----GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
+|+|+|++.. .......+++.+... +.| +|+|+||+|+... ..+....+.+...+ ....++|++|
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP-~IlVlNKiDl~~~-~el~~~l~~l~~~~----~~~~~Vi~IS 314 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKP-RWLVFNKIDLLDE-EEAEERAKAIVEAL----GWEGPVYLIS 314 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCC-EEEEEeCCccCCh-HHHHHHHHHHHHHh----CCCCCEEEEE
Confidence 9999998721 111223444555442 467 7889999999753 33333333333322 1223799999
Q ss_pred cccCCcCCchhhcchHHHHHHhh
Q 046721 215 GLIQGKYTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 215 Al~g~~y~~~ei~nLlR~I~~~k 237 (1068)
|+++ ..+..|+..|....
T Consensus 315 A~tg-----~GIdeLl~~I~~~L 332 (390)
T PRK12298 315 AASG-----LGVKELCWDLMTFI 332 (390)
T ss_pred CCCC-----cCHHHHHHHHHHHh
Confidence 9865 55556665554433
No 65
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=6.6e-14 Score=161.66 Aligned_cols=215 Identities=23% Similarity=0.259 Sum_probs=153.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc---c--------CCCCc-eeccEEEEe---------CCCeeEEEEeCCC--Chh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT---K--------LKVPE-VRGPVTVVS---------GKKRRLQFVECPN--DIN 132 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~---~--------~~~~t-t~~~Iti~~---------~~k~rl~fIDtPG--dl~ 132 (1068)
-++++||.|.++|||||..+|+.... . .+.+. ...+|||.. +...-+.+||||| ||.
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 47899999999999999999987521 1 11111 123466422 2347889999999 676
Q ss_pred H-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEE
Q 046721 133 G-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLF 211 (1068)
Q Consensus 133 s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf 211 (1068)
. +-+.+..||.+||||||++|+..||...+-.+...|+. +|.|+||+|+.. .+...+...+.+.| ..+.++++
T Consensus 140 ~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~-iIpVlNKIDlp~--adpe~V~~q~~~lF---~~~~~~~i 213 (650)
T KOG0462|consen 140 GEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLA-IIPVLNKIDLPS--ADPERVENQLFELF---DIPPAEVI 213 (650)
T ss_pred ceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCe-EEEeeeccCCCC--CCHHHHHHHHHHHh---cCCccceE
Confidence 5 77888999999999999999999999888888889998 899999999975 34456666666554 34677999
Q ss_pred EEecccCCcCCchhhcchHHHHHHhhcccccccccCCe-EE-EEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCc
Q 046721 212 KLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWRTSHPY-IL-VDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGT 289 (1068)
Q Consensus 212 ~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR~~rPy-lL-adrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nq 289 (1068)
++||+.|+. +..++..|....|.|..-+ ..|+ +| .+.+.|. .+.+..+|+|.-+.++.|+
T Consensus 214 ~vSAK~G~~-----v~~lL~AII~rVPpP~~~~-d~plr~Lifds~yD~------------y~G~I~~vrv~~G~vrkGd 275 (650)
T KOG0462|consen 214 YVSAKTGLN-----VEELLEAIIRRVPPPKGIR-DAPLRMLIFDSEYDE------------YRGVIALVRVVDGVVRKGD 275 (650)
T ss_pred EEEeccCcc-----HHHHHHHHHhhCCCCCCCC-CcchHHHhhhhhhhh------------hcceEEEEEEeeeeeecCC
Confidence 999998743 4447777767777665543 3354 23 3222111 2345578889888899999
Q ss_pred EEEEecCC-CeeEEeeecC-CCCCCCC
Q 046721 290 KVHIAGAG-DYSLAGVTGL-ADPCPLP 314 (1068)
Q Consensus 290 lVhIpG~G-dfqIk~I~~~-~DP~pl~ 314 (1068)
.|...-.| .+.++.|+.+ |+-|+..
T Consensus 276 kV~~~~t~~~yev~~vgvm~p~~~~~~ 302 (650)
T KOG0462|consen 276 KVQSAATGKSYEVKVVGVMRPEMTPVV 302 (650)
T ss_pred EEEEeecCcceEeEEeEEeccCceeee
Confidence 99866555 6788888875 4444333
No 66
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.55 E-value=7.4e-14 Score=150.09 Aligned_cols=141 Identities=24% Similarity=0.301 Sum_probs=99.1
Q ss_pred EEEEECCCCCChhHHHHHHHhccc--c--------------------------CCCCceeccEEE------EeCCCeeEE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYT--K--------------------------LKVPEVRGPVTV------VSGKKRRLQ 123 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~--~--------------------------~~~~tt~~~Iti------~~~~k~rl~ 123 (1068)
+|+|+|++++|||||+.+|+.... . ....+...++|+ +...+.+++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999975310 0 001111122332 224578999
Q ss_pred EEeCCCC--hh-HHHHHHHhcCEEEEEEeCCC-------CCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC---cHHHHH
Q 046721 124 FVECPND--IN-GMIDCAKFADLALLLIDASH-------GFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT---DKKKLR 190 (1068)
Q Consensus 124 fIDtPGd--l~-smld~akvADlVLlVIDas~-------g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk---~~k~l~ 190 (1068)
|+||||. +. .++.++..+|++|||||++. +...++.+++..+...+++++|+|+||+|+.. +...+.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 9999993 33 47888899999999999987 34556777777777788777899999999983 234456
Q ss_pred HHHHHHHHHhccccc--CCCeEEEEecccC
Q 046721 191 KTKQHLKHRFGTELY--HGAKLFKLSGLIQ 218 (1068)
Q Consensus 191 ~vkk~Lk~~~~~e~~--~~~kVf~ISAl~g 218 (1068)
.+.+.+...+....+ ...+++++||++|
T Consensus 161 ~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg 190 (219)
T cd01883 161 EIKKELSPFLKKVGYNPKDVPFIPISGLTG 190 (219)
T ss_pred HHHHHHHHHHHHcCCCcCCceEEEeecCcC
Confidence 666666555433222 2478999999987
No 67
>COG2262 HflX GTPases [General function prediction only]
Probab=99.55 E-value=6.4e-14 Score=158.89 Aligned_cols=148 Identities=21% Similarity=0.250 Sum_probs=102.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhc--cccCCCCceeccEE--EEeCCCeeEEEEeCCC-----------ChhHHHHHH
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKH--YTKLKVPEVRGPVT--VVSGKKRRLQFVECPN-----------DINGMIDCA 138 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~--~~~~~~~tt~~~It--i~~~~k~rl~fIDtPG-----------dl~smld~a 138 (1068)
..-+.|++||++|+|||||+|+|++. ++....+.|-.|.| +....++++.+.||-| .|.++|..+
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 34568999999999999999999987 34455555555555 3334478999999998 366799999
Q ss_pred HhcCEEEEEEeCCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 139 KFADLALLLIDASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 139 kvADlVLlVIDas~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
..||++|+|||+|++.-.+. ....++|.. ..+| +|+|+||+|++.+...+. . ++... + ..+++|
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p-~i~v~NKiD~~~~~~~~~----~----~~~~~-~--~~v~iS 337 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIP-IILVLNKIDLLEDEEILA----E----LERGS-P--NPVFIS 337 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCC-EEEEEecccccCchhhhh----h----hhhcC-C--CeEEEE
Confidence 99999999999998732222 234445544 4556 899999999987543111 1 11111 1 578899
Q ss_pred cccCCcCCchhhcchHHHHHHhhc
Q 046721 215 GLIQGKYTKKDIGNLAEFISVMKF 238 (1068)
Q Consensus 215 Al~g~~y~~~ei~nLlR~I~~~k~ 238 (1068)
|+++ .++..|.+.|.....
T Consensus 338 A~~~-----~gl~~L~~~i~~~l~ 356 (411)
T COG2262 338 AKTG-----EGLDLLRERIIELLS 356 (411)
T ss_pred eccC-----cCHHHHHHHHHHHhh
Confidence 9965 556666666655443
No 68
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=3e-13 Score=157.84 Aligned_cols=215 Identities=23% Similarity=0.274 Sum_probs=143.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEE-------EEeC--CCeeEEEEeCCC--ChhHHH-HHHHhcC
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVT-------VVSG--KKRRLQFVECPN--DINGMI-DCAKFAD 142 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~It-------i~~~--~k~rl~fIDtPG--dl~sml-d~akvAD 142 (1068)
.|++|+|+||.++|||||+..|-+..+... -.|+|| +... ....|+|+|||| .|.+|. +.++++|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~---EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtD 80 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAG---EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTD 80 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccc---cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCcccc
Confidence 477999999999999999999988754221 123344 2333 347999999999 466664 4689999
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHH--hcccccCCCeEEEEecccCCc
Q 046721 143 LALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHR--FGTELYHGAKLFKLSGLIQGK 220 (1068)
Q Consensus 143 lVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~--~~~e~~~~~kVf~ISAl~g~~ 220 (1068)
+++|||++.+|+.+||.+-++.+++.|.| +|+++||+|+... +...+...|.+. ....|.....++++||++|
T Consensus 81 IaILVVa~dDGv~pQTiEAI~hak~a~vP-~iVAiNKiDk~~~--np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg-- 155 (509)
T COG0532 81 IAILVVAADDGVMPQTIEAINHAKAAGVP-IVVAINKIDKPEA--NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTG-- 155 (509)
T ss_pred EEEEEEEccCCcchhHHHHHHHHHHCCCC-EEEEEecccCCCC--CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCC--
Confidence 99999999999999999999999999999 8999999999852 233444444432 2344556788999999976
Q ss_pred CCchhhcchHHHHHHhhc-cccccc---ccCCeEEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecC
Q 046721 221 YTKKDIGNLAEFISVMKF-HSLSWR---TSHPYILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGA 296 (1068)
Q Consensus 221 y~~~ei~nLlR~I~~~k~-r~l~wR---~~rPylLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~ 296 (1068)
.++.+|+..|.-... ..+..+ ..+.+++-.+++ ++.|.+ ++=-|.-+.|+.|+.+.+-+.
T Consensus 156 ---~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~d------------kG~G~v-atviv~~GtL~~GD~iv~g~~ 219 (509)
T COG0532 156 ---EGIDELLELILLLAEVLELKANPEGPARGTVIEVKLD------------KGLGPV-ATVIVQDGTLKKGDIIVAGGE 219 (509)
T ss_pred ---CCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEec------------cCCCce-EEEEEecCeEecCCEEEEccC
Confidence 555566644432222 122222 112334333322 223332 333556556999998877766
Q ss_pred CCeeEEeeecCCCCCCC
Q 046721 297 GDYSLAGVTGLADPCPL 313 (1068)
Q Consensus 297 GdfqIk~I~~~~DP~pl 313 (1068)
.+--..-+.....|.|+
T Consensus 220 ~g~I~t~v~~~~~~i~~ 236 (509)
T COG0532 220 YGRVRTMVDDLGKPIKE 236 (509)
T ss_pred CCceEEeehhcCCCccc
Confidence 66655555555555443
No 69
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.53 E-value=1.4e-13 Score=141.47 Aligned_cols=150 Identities=20% Similarity=0.252 Sum_probs=99.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc--------cCCCC---------ceecc--EEE-E---eCCCeeEEEEeCCC--Ch
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT--------KLKVP---------EVRGP--VTV-V---SGKKRRLQFVECPN--DI 131 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~--------~~~~~---------tt~~~--Iti-~---~~~k~rl~fIDtPG--dl 131 (1068)
++|++||++++|||||+++|++... ..... .+... +.+ . ...+..+.|+|||| ++
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 4799999999999999999997421 00000 01111 111 1 23466789999999 45
Q ss_pred hH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeE
Q 046721 132 NG-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKL 210 (1068)
Q Consensus 132 ~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kV 210 (1068)
.. +...+..||++|||+|++.+...++...+..+...++| +|+|+||+|+.... .....+.+.+.+. .+...+
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~--~~~~~~~~~~~~~---~~~~~~ 154 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLE-IIPVINKIDLPSAD--PERVKQQIEDVLG---LDPSEA 154 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCC-EEEEEECCCCCcCC--HHHHHHHHHHHhC---CCcccE
Confidence 44 55678999999999999988776666666666667888 89999999986421 1222333333321 123468
Q ss_pred EEEecccCCcCCchhhcchHHHHHHhh
Q 046721 211 FKLSGLIQGKYTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 211 f~ISAl~g~~y~~~ei~nLlR~I~~~k 237 (1068)
|++||++| ..+..|...|....
T Consensus 155 ~~~Sa~~g-----~gi~~l~~~l~~~~ 176 (179)
T cd01890 155 ILVSAKTG-----LGVEDLLEAIVERI 176 (179)
T ss_pred EEeeccCC-----CCHHHHHHHHHhhC
Confidence 99999965 56667777665543
No 70
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.6e-13 Score=151.92 Aligned_cols=220 Identities=18% Similarity=0.217 Sum_probs=153.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc-------------ccCCCCc-----------------eeccEEE------EeCC
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY-------------TKLKVPE-----------------VRGPVTV------VSGK 118 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~-------------~~~~~~t-----------------t~~~Iti------~~~~ 118 (1068)
.+..++.+|..+.||||||.+|+... .+....+ ...+||| ++..
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 46778999999999999999998631 1110111 1245664 3457
Q ss_pred CeeEEEEeCCCC---hhHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC-cHHHHHHHHH
Q 046721 119 KRRLQFVECPND---INGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT-DKKKLRKTKQ 194 (1068)
Q Consensus 119 k~rl~fIDtPGd---l~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk-~~k~l~~vkk 194 (1068)
+++|++.||||. ...|...|.-||++|++|||..|+..|+..+.-++...|++++|+++||||++. +++.+..+..
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~ 164 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVA 164 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHHHH
Confidence 999999999995 335999999999999999999999999999888888899999999999999996 4455677776
Q ss_pred HHHHHhcccccCCCeEEEEecccC----------CcCCchhhcchHHHHHHhhcccccccccCCeEEEEeEEecCCCccc
Q 046721 195 HLKHRFGTELYHGAKLFKLSGLIQ----------GKYTKKDIGNLAEFISVMKFHSLSWRTSHPYILVDRFEDVTPPERV 264 (1068)
Q Consensus 195 ~Lk~~~~~e~~~~~kVf~ISAl~g----------~~y~~~ei~nLlR~I~~~k~r~l~wR~~rPylLadrved~~~~~~i 264 (1068)
.+..+...--......+|+||+.| .+|....+..++..+....- +...|+-+..+ ++.-|
T Consensus 165 dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~i~~~-----~~~~~~RfPVQ--~V~Rp--- 234 (431)
T COG2895 165 DYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEILETVEIADD-----RSAKAFRFPVQ--YVNRP--- 234 (431)
T ss_pred HHHHHHHHcCCCcceEEechhccCCcccccccCCCcccCccHHHHHhhcccccc-----ccccceeeceE--EecCC---
Confidence 665554443445668999999987 45665555544444322221 12223322222 12111
Q ss_pred cccCCCCceEEEEEEEEeeeecCCcEEE-EecCCCeeEEeeecCCC
Q 046721 265 HVNNKCDRNVAIYGYLRGCNLKKGTKVH-IAGAGDYSLAGVTGLAD 309 (1068)
Q Consensus 265 ~~~~~~~gtl~VtGyVRG~~L~~nqlVh-IpG~GdfqIk~I~~~~D 309 (1068)
|. ..+. ..|.|-++.+++|+.|. +|..-...+++|.....
T Consensus 235 --~~-dfRG--yaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg 275 (431)
T COG2895 235 --NL-DFRG--YAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDG 275 (431)
T ss_pred --CC-cccc--cceeeeccceecCCeEEEccCCCeeeEEEEeccCC
Confidence 10 1233 47889999999999665 56666889999987643
No 71
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.51 E-value=4.2e-13 Score=139.19 Aligned_cols=138 Identities=21% Similarity=0.284 Sum_probs=96.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc-c---cCCCCceeccEEEEeCCCeeEEEEeCCCC------------hhHH----H
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY-T---KLKVPEVRGPVTVVSGKKRRLQFVECPND------------INGM----I 135 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~-~---~~~~~tt~~~Iti~~~~k~rl~fIDtPGd------------l~sm----l 135 (1068)
...|+|+|++|+|||||+|+|++.. . +..+.+|........ ...++|+||||. +..+ +
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l 95 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYL 95 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--CCcEEEEeCCCCccccCChhHHHHHHHHHHHHH
Confidence 4588999999999999999999863 1 223333332111211 247999999992 1112 2
Q ss_pred HHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEec
Q 046721 136 DCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSG 215 (1068)
Q Consensus 136 d~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISA 215 (1068)
..+..+|++|+|+|++.++......+++.+...++| +++|+||+|+... ..+....+.++..+... ....++|++||
T Consensus 96 ~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~-~~~~~~~~~i~~~l~~~-~~~~~v~~~Sa 172 (179)
T TIGR03598 96 EKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIP-VLIVLTKADKLKK-SELNKQLKKIKKALKKD-ADDPSVQLFSS 172 (179)
T ss_pred HhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCCH-HHHHHHHHHHHHHHhhc-cCCCceEEEEC
Confidence 223457899999999998888888888888888998 8999999999853 34444555555554332 23458999999
Q ss_pred ccC
Q 046721 216 LIQ 218 (1068)
Q Consensus 216 l~g 218 (1068)
++|
T Consensus 173 ~~g 175 (179)
T TIGR03598 173 LKK 175 (179)
T ss_pred CCC
Confidence 976
No 72
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.51 E-value=1.9e-13 Score=151.68 Aligned_cols=134 Identities=13% Similarity=0.193 Sum_probs=98.3
Q ss_pred EEEEECCCCCChhHHHHHHHhccc--c-------------CCCCceeccEEE------EeCCCeeEEEEeCCCC--hh-H
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYT--K-------------LKVPEVRGPVTV------VSGKKRRLQFVECPND--IN-G 133 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~--~-------------~~~~tt~~~Iti------~~~~k~rl~fIDtPGd--l~-s 133 (1068)
+|+|+|++|+|||||+++|+.... . .........+|+ +...+.+++||||||. +. .
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 489999999999999999985311 0 011111223443 2245789999999994 43 3
Q ss_pred HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEE
Q 046721 134 MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKL 213 (1068)
Q Consensus 134 mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~I 213 (1068)
+..++..+|++|||||++.++..++..++..+...|+| +|+|+||+|+... ....+...++..+. ......++|+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~a--~~~~~~~~l~~~l~--~~~~~~~~Pi 155 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVP-RIAFVNKMDRTGA--DFFRVVEQIREKLG--ANPVPLQLPI 155 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCCCCC--CHHHHHHHHHHHhC--CCceEEEecc
Confidence 77889999999999999999999999999999999999 6889999998742 23445566666552 2345667888
Q ss_pred ecc
Q 046721 214 SGL 216 (1068)
Q Consensus 214 SAl 216 (1068)
|+.
T Consensus 156 sa~ 158 (270)
T cd01886 156 GEE 158 (270)
T ss_pred ccC
Confidence 864
No 73
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.51 E-value=2.2e-13 Score=146.97 Aligned_cols=152 Identities=16% Similarity=0.252 Sum_probs=104.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc--cC-----------CCCceeccEEE--------Ee--------CCCeeEEEEeC
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT--KL-----------KVPEVRGPVTV--------VS--------GKKRRLQFVEC 127 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~--~~-----------~~~tt~~~Iti--------~~--------~~k~rl~fIDt 127 (1068)
++|||||++++|||||+.+|+.... .. ...+...++|+ .. +.+..+.||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 4799999999999999999986421 00 00111122332 11 12678999999
Q ss_pred CC--ChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcC------CcH---HHHHHHHHH
Q 046721 128 PN--DING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKF------TDK---KKLRKTKQH 195 (1068)
Q Consensus 128 PG--dl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlv------k~~---k~l~~vkk~ 195 (1068)
|| ++.. +..++..||++|+|+|++.|+..++..++..+...|+| +|+|+||+|+. .+. ..+..+...
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~ 159 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKIDRLILELKLSPEEAYQRLARIIEQ 159 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCcchhhhcCCHHHHHHHHHHHHHH
Confidence 99 4554 78889999999999999999999999999988888998 89999999986 211 223444444
Q ss_pred HHHHhccc--------------c-cCCCeEEEEecccCCcCCchhhcch
Q 046721 196 LKHRFGTE--------------L-YHGAKLFKLSGLIQGKYTKKDIGNL 229 (1068)
Q Consensus 196 Lk~~~~~e--------------~-~~~~kVf~ISAl~g~~y~~~ei~nL 229 (1068)
+...+... + +..-.|.+-||+.||.++-.....+
T Consensus 160 ~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~~f~~~ 208 (222)
T cd01885 160 VNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARI 208 (222)
T ss_pred HhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEeccccccch
Confidence 44432221 1 2222488899999998765443333
No 74
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.50 E-value=5.3e-13 Score=144.27 Aligned_cols=149 Identities=23% Similarity=0.276 Sum_probs=106.8
Q ss_pred EEEECCCCCChhHHHHHHHhc-cccC----------CCCceeccEE------------------------------EEeC
Q 046721 79 VVVQGPPQVGKSLLIKCLIKH-YTKL----------KVPEVRGPVT------------------------------VVSG 117 (1068)
Q Consensus 79 VaVVG~pnvGKSTLIn~L~~~-~~~~----------~~~tt~~~It------------------------------i~~~ 117 (1068)
|+|+|+.++|||||+++|+.. +... ..++...++| ++..
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICEK 81 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeeee
Confidence 789999999999999999853 1100 0000000111 1112
Q ss_pred CCeeEEEEeCCCC--hh-HHHHHHH--hcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHH
Q 046721 118 KKRRLQFVECPND--IN-GMIDCAK--FADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKT 192 (1068)
Q Consensus 118 ~k~rl~fIDtPGd--l~-smld~ak--vADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~v 192 (1068)
.++.++|+||||. +. .++.++. .+|++|+|||+..++..++.+++..+...|+| +|+|+||+|+++ ...+...
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip-~ivvvNK~D~~~-~~~~~~~ 159 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP-VFVVVTKIDLAP-ANILQET 159 (224)
T ss_pred CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-EEEEEECccccC-HHHHHHH
Confidence 2568999999994 33 3666664 79999999999999999999999999999999 899999999985 4456666
Q ss_pred HHHHHHHhcc-----------------------cccCCCeEEEEecccCCcCCchhhcchHHHHH
Q 046721 193 KQHLKHRFGT-----------------------ELYHGAKLFKLSGLIQGKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 193 kk~Lk~~~~~-----------------------e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~ 234 (1068)
++.++..+.. .+....+||++||++| .++..|..+|.
T Consensus 160 ~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg-----~Gi~~L~~~L~ 219 (224)
T cd04165 160 LKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTG-----EGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCc-----cCHHHHHHHHH
Confidence 6666666531 1223568999999965 66777777773
No 75
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=6.3e-13 Score=153.51 Aligned_cols=144 Identities=23% Similarity=0.355 Sum_probs=111.2
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhccccCC----CCceeccEEEEeCCCeeEEEEeCCC--ChhHHH-HHHHhcCEE
Q 046721 72 GEPPPYVVVVQGPPQVGKSLLIKCLIKHYTKLK----VPEVRGPVTVVSGKKRRLQFVECPN--DINGMI-DCAKFADLA 144 (1068)
Q Consensus 72 ~~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~----~~tt~~~Iti~~~~k~rl~fIDtPG--dl~sml-d~akvADlV 144 (1068)
..+.|++|.|+||.++|||||+.+|-+..+... +..--|.+++....+.+++|+|||| .|.+|. +.|.++|+|
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence 345678999999999999999999998753221 0111122333334578999999999 577775 468999999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHH--hcccccCCCeEEEEecccC
Q 046721 145 LLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHR--FGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 145 LlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~--~~~e~~~~~kVf~ISAl~g 218 (1068)
+|||.|..|+.+||.+.+..+++.++| +|+++||||... ....++++.|.+. ....+.++..+++|||++|
T Consensus 229 VLVVAadDGVmpQT~EaIkhAk~A~Vp-iVvAinKiDkp~--a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g 301 (683)
T KOG1145|consen 229 VLVVAADDGVMPQTLEAIKHAKSANVP-IVVAINKIDKPG--ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTG 301 (683)
T ss_pred EEEEEccCCccHhHHHHHHHHHhcCCC-EEEEEeccCCCC--CCHHHHHHHHHHcCccHHHcCCceeEEEeecccC
Confidence 999999999999999999999999999 899999999763 4455666665432 1234567889999999977
No 76
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.50 E-value=4.5e-13 Score=159.78 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=108.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCC-----------hhH---HHH
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPND-----------ING---MID 136 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd-----------l~s---mld 136 (1068)
.++.|+|||.||||||||+|+|++.. ++..+.++...+. .+...+..+.|+||||. +.+ ...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 46899999999999999999999873 4455566655544 23335678899999992 112 234
Q ss_pred HHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecc
Q 046721 137 CAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGL 216 (1068)
Q Consensus 137 ~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl 216 (1068)
++..||++|+|+|++.+...+...++..+...|+| +|+|+||+|+... .......+.+...+. ....++++++||+
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~p-iIiV~NK~Dl~~~-~~~~~~~~~i~~~l~--~~~~~~~~~~SAk 365 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRA-LVLAFNKWDLVDE-DRRYYLEREIDRELA--QVPWAPRVNISAK 365 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCCh-hHHHHHHHHHHHhcc--cCCCCCEEEEECC
Confidence 56899999999999999888888888888888998 8999999999853 222233333333331 1245789999999
Q ss_pred cCCcCCchhhcchHHHHHH
Q 046721 217 IQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 217 ~g~~y~~~ei~nLlR~I~~ 235 (1068)
+| ..+..+...|..
T Consensus 366 ~g-----~gv~~lf~~i~~ 379 (472)
T PRK03003 366 TG-----RAVDKLVPALET 379 (472)
T ss_pred CC-----CCHHHHHHHHHH
Confidence 76 555556555543
No 77
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.50 E-value=9.7e-13 Score=131.13 Aligned_cols=148 Identities=27% Similarity=0.354 Sum_probs=104.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc---cCCCCceeccEE-EEeCCCeeEEEEeCCCChh-----------HHHHHHHh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT---KLKVPEVRGPVT-VVSGKKRRLQFVECPNDIN-----------GMIDCAKF 140 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~---~~~~~tt~~~It-i~~~~k~rl~fIDtPGdl~-----------smld~akv 140 (1068)
...|+++|.+|+|||||+|+|++... .....+++..+. +....+..+.++||||... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 46799999999999999999998732 222333333333 3344567899999999311 13445788
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCc
Q 046721 141 ADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGK 220 (1068)
Q Consensus 141 ADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~ 220 (1068)
+|++++|+|++.++......++..+...+.| +++|+||+|+......+......+... .+..+++.+|++.+
T Consensus 83 ~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~-- 154 (168)
T cd04163 83 VDLVLFVVDASEPIGEGDEFILELLKKSKTP-VILVLNKIDLVKDKEDLLPLLEKLKEL-----GPFAEIFPISALKG-- 154 (168)
T ss_pred CCEEEEEEECCCccCchHHHHHHHHHHhCCC-EEEEEEchhccccHHHHHHHHHHHHhc-----cCCCceEEEEeccC--
Confidence 9999999999988666667777888777888 789999999984344445554444333 23568999998854
Q ss_pred CCchhhcchHHHHH
Q 046721 221 YTKKDIGNLAEFIS 234 (1068)
Q Consensus 221 y~~~ei~nLlR~I~ 234 (1068)
..+..+...|.
T Consensus 155 ---~~~~~l~~~l~ 165 (168)
T cd04163 155 ---ENVDELLEEIV 165 (168)
T ss_pred ---CChHHHHHHHH
Confidence 55566665553
No 78
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.49 E-value=6.8e-13 Score=152.42 Aligned_cols=140 Identities=19% Similarity=0.203 Sum_probs=94.8
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE--EEeCCCeeEEEEeCCCC-----------hhHHHHHHHhc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT--VVSGKKRRLQFVECPND-----------INGMIDCAKFA 141 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It--i~~~~k~rl~fIDtPGd-----------l~smld~akvA 141 (1068)
..|+|||+||||||||+|+|++.. +...+.+|..+++ +.......++|+||||. +.+++..+..|
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~A 269 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREA 269 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHhC
Confidence 579999999999999999999973 3344555555555 22224568999999994 23466678899
Q ss_pred CEEEEEEeCCCCCchhHH----HHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEeccc
Q 046721 142 DLALLLIDASHGFEMETF----EFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLI 217 (1068)
Q Consensus 142 DlVLlVIDas~g~e~~t~----eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~ 217 (1068)
|++|+|+|++.+...+.. .+|..+...+.| +|+|+||+|+... ..+. .+. . ...++|++||++
T Consensus 270 Dlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~p-iIlV~NK~Dl~~~-~~v~----~~~----~---~~~~~i~iSAkt 336 (351)
T TIGR03156 270 DLLLHVVDASDPDREEQIEAVEKVLEELGAEDIP-QLLVYNKIDLLDE-PRIE----RLE----E---GYPEAVFVSAKT 336 (351)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHhccCCCC-EEEEEEeecCCCh-HhHH----HHH----h---CCCCEEEEEccC
Confidence 999999999876543332 334333333567 8999999999753 2221 111 0 124689999996
Q ss_pred CCcCCchhhcchHHHHH
Q 046721 218 QGKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 218 g~~y~~~ei~nLlR~I~ 234 (1068)
| .++..|...|.
T Consensus 337 g-----~GI~eL~~~I~ 348 (351)
T TIGR03156 337 G-----EGLDLLLEAIA 348 (351)
T ss_pred C-----CCHHHHHHHHH
Confidence 5 55666665553
No 79
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.47 E-value=1.4e-12 Score=136.48 Aligned_cols=151 Identities=24% Similarity=0.263 Sum_probs=103.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc----ccCCCCceeccEEEEeCCCeeEEEEeCCCC------------hhHHHH-H
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY----TKLKVPEVRGPVTVVSGKKRRLQFVECPND------------INGMID-C 137 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~----~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd------------l~smld-~ 137 (1068)
...-||++|.+|||||||||+|+++. ++.++..|+. +..... ...+.|||.||- ...++. .
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~-iNff~~-~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~Y 100 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQL-INFFEV-DDELRLVDLPGYGYAKVPKEVKEKWKKLIEEY 100 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccce-eEEEEe-cCcEEEEeCCCcccccCCHHHHHHHHHHHHHH
Confidence 34579999999999999999999963 5555555543 222221 224889999991 122332 2
Q ss_pred H---HhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 138 A---KFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 138 a---kvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
+ ..-.++++|||+.+++...+.+++..|...|+| +++|+||+|.++.. ...+.+..++..+........-++..|
T Consensus 101 L~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~-~~vv~tK~DKi~~~-~~~k~l~~v~~~l~~~~~~~~~~~~~s 178 (200)
T COG0218 101 LEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIP-VIVVLTKADKLKKS-ERNKQLNKVAEELKKPPPDDQWVVLFS 178 (200)
T ss_pred HhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCC-eEEEEEccccCChh-HHHHHHHHHHHHhcCCCCccceEEEEe
Confidence 2 346789999999999999999999999999999 89999999999843 334444555544433333332267777
Q ss_pred cccCCcCCchhhcchHHHHH
Q 046721 215 GLIQGKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 215 Al~g~~y~~~ei~nLlR~I~ 234 (1068)
+.. ..++..|...|.
T Consensus 179 s~~-----k~Gi~~l~~~i~ 193 (200)
T COG0218 179 SLK-----KKGIDELKAKIL 193 (200)
T ss_pred ccc-----ccCHHHHHHHHH
Confidence 664 344555555553
No 80
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.47 E-value=1.1e-12 Score=130.71 Aligned_cols=139 Identities=19% Similarity=0.232 Sum_probs=96.3
Q ss_pred EEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCChh-----------HHHHHHHhcCEE
Q 046721 80 VVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPNDIN-----------GMIDCAKFADLA 144 (1068)
Q Consensus 80 aVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGdl~-----------smld~akvADlV 144 (1068)
|++|.+|+|||||+|+|++.. ......++..... .....+..+.|+||||... .....+..+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 589999999999999999863 2333344433222 2223457899999999211 134557889999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 145 LLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 145 LlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
|+|+|+..++......++..+...+.| +++|+||+|+...... ... ++. ....+++++||+++ .
T Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~~----~~~----~~~--~~~~~~~~~Sa~~~-----~ 144 (157)
T cd01894 81 LFVVDGREGLTPADEEIAKYLRKSKKP-VILVVNKVDNIKEEDE----AAE----FYS--LGFGEPIPISAEHG-----R 144 (157)
T ss_pred EEEEeccccCCccHHHHHHHHHhcCCC-EEEEEECcccCChHHH----HHH----HHh--cCCCCeEEEecccC-----C
Confidence 999999988777777888888888888 8999999999863221 111 111 12347899999865 5
Q ss_pred hhcchHHHHH
Q 046721 225 DIGNLAEFIS 234 (1068)
Q Consensus 225 ei~nLlR~I~ 234 (1068)
++..+...|.
T Consensus 145 gv~~l~~~l~ 154 (157)
T cd01894 145 GIGDLLDAIL 154 (157)
T ss_pred CHHHHHHHHH
Confidence 5666665554
No 81
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=8.6e-14 Score=150.59 Aligned_cols=213 Identities=24% Similarity=0.300 Sum_probs=154.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEE-------------------------------------Ee
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTV-------------------------------------VS 116 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti-------------------------------------~~ 116 (1068)
.+.++|+.||+..+||||+++++.+-.+-.--.+....||+ ..
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 56789999999999999999999873110000000000110 00
Q ss_pred C---C---CeeEEEEeCCC-C--hhHHHHHHHhcCEEEEEEeCCCCC-chhHHHHHHHHHhCCCCcEEEEEeCCCcCCcH
Q 046721 117 G---K---KRRLQFVECPN-D--INGMIDCAKFADLALLLIDASHGF-EMETFEFLNLMQNHGLPNVMGVLTHLDKFTDK 186 (1068)
Q Consensus 117 ~---~---k~rl~fIDtPG-d--l~smld~akvADlVLlVIDas~g~-e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~ 186 (1068)
+ + -+.+.|+|||| | +..||..+.+.|.+||+|-+++.+ .+++.++|..+.-..+.++|++-||+|+++.
T Consensus 116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e- 194 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKE- 194 (466)
T ss_pred CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhH-
Confidence 0 0 24789999999 4 345999999999999999998764 5789999999988889999999999999974
Q ss_pred HHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchHHHHHHhhcccccccccCCeEEEEeEEecCCCccccc
Q 046721 187 KKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWRTSHPYILVDRFEDVTPPERVHV 266 (1068)
Q Consensus 187 k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR~~rPylLadrved~~~~~~i~~ 266 (1068)
.+..+..+.+..++......+++++|+||.- .-.+..++.+|....|-|..--...|-|++.|-+|+..|..-..
T Consensus 195 ~~A~eq~e~I~kFi~~t~ae~aPiiPisAQl-----kyNId~v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG~ev~ 269 (466)
T KOG0466|consen 195 SQALEQHEQIQKFIQGTVAEGAPIIPISAQL-----KYNIDVVCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPGSEVD 269 (466)
T ss_pred HHHHHHHHHHHHHHhccccCCCceeeehhhh-----ccChHHHHHHHHhcCCCCccccCCCCcEEEEEeeccCCCCchhh
Confidence 4455566677788888888999999999963 34566778999888887776666789999999999987643111
Q ss_pred cCCCCceEEEEEEEEeeeecCCcEEEE-ec
Q 046721 267 NNKCDRNVAIYGYLRGCNLKKGTKVHI-AG 295 (1068)
Q Consensus 267 ~~~~~gtl~VtGyVRG~~L~~nqlVhI-pG 295 (1068)
+..|.+ ..|.+--+.|++||.+.| ||
T Consensus 270 --~lkGgv-aggsil~Gvlkvg~~IEiRPG 296 (466)
T KOG0466|consen 270 --DLKGGV-AGGSILKGVLKVGQEIEIRPG 296 (466)
T ss_pred --cccCcc-ccchhhhhhhhcCcEEEecCc
Confidence 112332 344444455699999987 54
No 82
>KOG1951 consensus GTP-binding protein AARP2 involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.7e-13 Score=129.48 Aligned_cols=102 Identities=37% Similarity=0.542 Sum_probs=97.5
Q ss_pred CCCHhhHhhCCCCCCCCCCccccccccccccc--ccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046721 962 VIPKSLQAALPFESKPKDIPSRKRLFLENSRA--VVMEPQERKVHALIQHLKLIRNEKMKKRKLKEARKRNEVEAERAKD 1039 (1068)
Q Consensus 962 ~ipk~l~~~LPf~~kpk~~~~~~~~~~~~~ra--vv~~~~ekk~~~l~~~l~ti~~~k~~k~~~~~~~~~~~~~~~~~~~ 1039 (1068)
.||++||++|||+|+||...++++..+.-+|| ||+.|+|+|+.++++++.|++.++..++++.++.++++|+++.++.
T Consensus 1 ~iPKalqk~LPfkskpka~~~~k~~l~~~~r~~~vv~~p~e~K~~~~~~~v~t~~~~~~qk~K~~~~~krk~~~e~k~~~ 80 (115)
T KOG1951|consen 1 MIPKALQKALPFKSKPKAAKKRKRPLQDLQRADEVVAKPRERKARAVIDAVETARSFKRQKAKKTKKKKRKEYREKKAKK 80 (115)
T ss_pred CccHHHHHhCCccccchhhccccccccchhhcchhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 046721 1040 KQLTRKRQRGERQERYREQDKLKK 1063 (1068)
Q Consensus 1040 e~~~~~~~k~~~k~~~~~~~~~~~ 1063 (1068)
++....+.++.++..|+..|+.-.
T Consensus 81 ~~~~~~r~~~kkr~~~kk~~k~~~ 104 (115)
T KOG1951|consen 81 EEPLEQREKEKKREGPKKVGKSTL 104 (115)
T ss_pred hhhhhhhHHHHHHhhhcccchhHH
Confidence 999999999999999998887653
No 83
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.47 E-value=5.3e-13 Score=133.80 Aligned_cols=133 Identities=24% Similarity=0.413 Sum_probs=99.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC------h-hHHHHHHHhcCEEEEEEe
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND------I-NGMIDCAKFADLALLLID 149 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd------l-~smld~akvADlVLlVID 149 (1068)
..|.+||++++|||||+++|.+...... .|.. +.... .+|||||. + .+++..+..||+|++|.|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~--KTq~---i~~~~----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYK--KTQA---IEYYD----NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcC--ccce---eEecc----cEEECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 4689999999999999999999754221 1111 11111 35999993 2 358888999999999999
Q ss_pred CCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcch
Q 046721 150 ASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNL 229 (1068)
Q Consensus 150 as~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nL 229 (1068)
|+.+.......|.+.+ ..| ||+|+||+|+..+.+++...++.|+.. ...++|.+|+.+| .++..|
T Consensus 73 at~~~~~~pP~fa~~f---~~p-vIGVITK~Dl~~~~~~i~~a~~~L~~a------G~~~if~vS~~~~-----eGi~eL 137 (143)
T PF10662_consen 73 ATEPRSVFPPGFASMF---NKP-VIGVITKIDLPSDDANIERAKKWLKNA------GVKEIFEVSAVTG-----EGIEEL 137 (143)
T ss_pred CCCCCccCCchhhccc---CCC-EEEEEECccCccchhhHHHHHHHHHHc------CCCCeEEEECCCC-----cCHHHH
Confidence 9987766666777664 456 999999999996567788888877766 3457899999854 777778
Q ss_pred HHHH
Q 046721 230 AEFI 233 (1068)
Q Consensus 230 lR~I 233 (1068)
.++|
T Consensus 138 ~~~L 141 (143)
T PF10662_consen 138 KDYL 141 (143)
T ss_pred HHHH
Confidence 7776
No 84
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.46 E-value=1.7e-12 Score=131.80 Aligned_cols=145 Identities=21% Similarity=0.286 Sum_probs=91.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhcccc--CCCCceeccEE-EEeCCCeeEEEEeCCCCh------------hHHHHHHHhc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTK--LKVPEVRGPVT-VVSGKKRRLQFVECPNDI------------NGMIDCAKFA 141 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~--~~~~tt~~~It-i~~~~k~rl~fIDtPGdl------------~smld~akvA 141 (1068)
+.|+|+|++|+|||||+|+|++.... ....++..... .......+++|+||||.. ..+......+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 36899999999999999999987432 12222222111 222346799999999941 1122223457
Q ss_pred CEEEEEEeCCCCCc---hhHHHHHHHHHhC--CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecc
Q 046721 142 DLALLLIDASHGFE---METFEFLNLMQNH--GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGL 216 (1068)
Q Consensus 142 DlVLlVIDas~g~e---~~t~eiL~~L~~~--GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl 216 (1068)
|++|||+|++.... .....++..+... ++| +|+|+||+|+.... .... .+.+. . ....++|++||+
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~-~~~~-~~~~~----~--~~~~~~~~~Sa~ 151 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKP-VIVVLNKIDLLTFE-DLSE-IEEEE----E--LEGEEVLKISTL 151 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCC-eEEEEEccccCchh-hHHH-HHHhh----h--hccCceEEEEec
Confidence 99999999986432 1223455555544 677 89999999997532 2222 11111 1 135689999999
Q ss_pred cCCcCCchhhcchHHHHHH
Q 046721 217 IQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 217 ~g~~y~~~ei~nLlR~I~~ 235 (1068)
+| .++..+...|+.
T Consensus 152 ~~-----~gi~~l~~~l~~ 165 (168)
T cd01897 152 TE-----EGVDEVKNKACE 165 (168)
T ss_pred cc-----CCHHHHHHHHHH
Confidence 65 667777766654
No 85
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.45 E-value=8.4e-13 Score=156.45 Aligned_cols=147 Identities=18% Similarity=0.178 Sum_probs=96.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCCCeeEEEEeCCCCh----------hHHHHHHHhcCE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGKKRRLQFVECPNDI----------NGMIDCAKFADL 143 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~k~rl~fIDtPGdl----------~smld~akvADl 143 (1068)
..|+|||+||||||||||+|++.. +...+.||..++. ++.....+|+|+||||-+ ..++..+..||+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradv 239 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAV 239 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCE
Confidence 469999999999999999999863 3345666666655 455556799999999942 136777889999
Q ss_pred EEEEEeCCCC------CchhH---HHHHHHH----------HhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccc
Q 046721 144 ALLLIDASHG------FEMET---FEFLNLM----------QNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTEL 204 (1068)
Q Consensus 144 VLlVIDas~g------~e~~t---~eiL~~L----------~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~ 204 (1068)
||+|||++.. ++... .++...+ ...+.| +|+|+||+|+.........+...+..+
T Consensus 240 Lv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP-~IVVlNKiDL~da~el~e~l~~~l~~~----- 313 (500)
T PRK12296 240 LVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERP-RLVVLNKIDVPDARELAEFVRPELEAR----- 313 (500)
T ss_pred EEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCC-EEEEEECccchhhHHHHHHHHHHHHHc-----
Confidence 9999999741 11111 1222222 123567 789999999974322122222222211
Q ss_pred cCCCeEEEEecccCCcCCchhhcchHHHHHHh
Q 046721 205 YHGAKLFKLSGLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 205 ~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~ 236 (1068)
+.+||++||+++ ..+..|...|...
T Consensus 314 --g~~Vf~ISA~tg-----eGLdEL~~~L~el 338 (500)
T PRK12296 314 --GWPVFEVSAASR-----EGLRELSFALAEL 338 (500)
T ss_pred --CCeEEEEECCCC-----CCHHHHHHHHHHH
Confidence 468999999865 5666666665444
No 86
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.45 E-value=2e-12 Score=147.52 Aligned_cols=147 Identities=19% Similarity=0.208 Sum_probs=97.4
Q ss_pred EEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeC-CCeeEEEEeCCCCh---------h-HHHHHHHhcCE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSG-KKRRLQFVECPNDI---------N-GMIDCAKFADL 143 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~-~k~rl~fIDtPGdl---------~-smld~akvADl 143 (1068)
-|+|||+||||||||+|+|++.. +...+.||..++. ++.. ...+++|+|+||-+ . ..+..+..||+
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~v 239 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRL 239 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCE
Confidence 49999999999999999999863 3345566766655 3333 46789999999942 2 36777888999
Q ss_pred EEEEEeCCCCCchhHH-HHHHHHHh-----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEeccc
Q 046721 144 ALLLIDASHGFEMETF-EFLNLMQN-----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLI 217 (1068)
Q Consensus 144 VLlVIDas~g~e~~t~-eiL~~L~~-----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~ 217 (1068)
+|+|+|++..-..+.. .++..|.. ...| +|+|+||+|+...........+..... ...++|++||++
T Consensus 240 lI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp-~IIV~NKiDL~~~~~~~~~~~~~~~~~------~~~~i~~iSAkt 312 (335)
T PRK12299 240 LLHLVDIEAVDPVEDYKTIRNELEKYSPELADKP-RILVLNKIDLLDEEEEREKRAALELAA------LGGPVFLISAVT 312 (335)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCC-eEEEEECcccCCchhHHHHHHHHHHHh------cCCCEEEEEcCC
Confidence 9999999853222222 33444443 2456 899999999975322121111111111 136799999986
Q ss_pred CCcCCchhhcchHHHHHHh
Q 046721 218 QGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 218 g~~y~~~ei~nLlR~I~~~ 236 (1068)
+ ..+..|+..|...
T Consensus 313 g-----~GI~eL~~~L~~~ 326 (335)
T PRK12299 313 G-----EGLDELLRALWEL 326 (335)
T ss_pred C-----CCHHHHHHHHHHH
Confidence 5 6677777666544
No 87
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.45 E-value=1.8e-12 Score=136.84 Aligned_cols=141 Identities=21% Similarity=0.230 Sum_probs=90.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE--EEeCCCeeEEEEeCCCCh-----------hHHHHHHHh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT--VVSGKKRRLQFVECPNDI-----------NGMIDCAKF 140 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It--i~~~~k~rl~fIDtPGdl-----------~smld~akv 140 (1068)
-+.|+|+|++|||||||+|+|++.. ....+.++..+.+ +.......++|+||||.. ..++..+..
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 120 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAE 120 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999873 2222222333332 222233489999999941 123444678
Q ss_pred cCEEEEEEeCCCCCchhHH-HHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecc
Q 046721 141 ADLALLLIDASHGFEMETF-EFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGL 216 (1068)
Q Consensus 141 ADlVLlVIDas~g~e~~t~-eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl 216 (1068)
+|++++|+|++.+...... .+...+.. .+.| +++|+||+|+..... .. .. + .....++|.+||+
T Consensus 121 ~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~-viiV~NK~Dl~~~~~-~~---~~----~---~~~~~~~~~~Sa~ 188 (204)
T cd01878 121 ADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIP-MILVLNKIDLLDDEE-LE---ER----L---EAGRPDAVFISAK 188 (204)
T ss_pred CCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCC-EEEEEEccccCChHH-HH---HH----h---hcCCCceEEEEcC
Confidence 9999999999876543322 23334433 3556 899999999976322 11 11 1 1235679999998
Q ss_pred cCCcCCchhhcchHHHH
Q 046721 217 IQGKYTKKDIGNLAEFI 233 (1068)
Q Consensus 217 ~g~~y~~~ei~nLlR~I 233 (1068)
++ .++..+...|
T Consensus 189 ~~-----~gi~~l~~~L 200 (204)
T cd01878 189 TG-----EGLDELLEAI 200 (204)
T ss_pred CC-----CCHHHHHHHH
Confidence 65 4555555555
No 88
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.45 E-value=1.9e-12 Score=131.56 Aligned_cols=145 Identities=23% Similarity=0.258 Sum_probs=89.1
Q ss_pred EEEEECCCCCChhHHHHHHHhccc--cCCCCceeccEE-EEeCCC-eeEEEEeCCCCh----------hHHHHHHHhcCE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYT--KLKVPEVRGPVT-VVSGKK-RRLQFVECPNDI----------NGMIDCAKFADL 143 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~--~~~~~tt~~~It-i~~~~k-~rl~fIDtPGdl----------~smld~akvADl 143 (1068)
.|+|||++|||||||+|+|++... +..+.++..+.. ...... ..+.|+||||-. ..++..+..||+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 489999999999999999997632 222333333222 233334 489999999931 124455677999
Q ss_pred EEEEEeCCCC-CchhH-HHHHHHHHh-----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecc
Q 046721 144 ALLLIDASHG-FEMET-FEFLNLMQN-----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGL 216 (1068)
Q Consensus 144 VLlVIDas~g-~e~~t-~eiL~~L~~-----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl 216 (1068)
+|+|+|++.+ -.-+. ..++..+.. .+.| +++|+||+|+..... .....+.+ + ... ...++|++||+
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~-~~~~~~~~---~-~~~-~~~~~~~~Sa~ 154 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKP-RIVVLNKIDLLDEEE-LFELLKEL---L-KEL-WGKPVFPISAL 154 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccc-cEEEEEchhcCCchh-hHHHHHHH---H-hhC-CCCCEEEEecC
Confidence 9999999875 11111 123333332 2566 789999999976332 22222221 1 111 24678999998
Q ss_pred cCCcCCchhhcchHHHHH
Q 046721 217 IQGKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 217 ~g~~y~~~ei~nLlR~I~ 234 (1068)
.+ .++..+...|.
T Consensus 155 ~~-----~gi~~l~~~i~ 167 (170)
T cd01898 155 TG-----EGLDELLRKLA 167 (170)
T ss_pred CC-----CCHHHHHHHHH
Confidence 65 55666665553
No 89
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.45 E-value=1.3e-12 Score=162.87 Aligned_cols=152 Identities=20% Similarity=0.248 Sum_probs=110.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCC-----------hhH---HHHH
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPND-----------ING---MIDC 137 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd-----------l~s---mld~ 137 (1068)
++.|+|+|.||||||||+|+|++.. ++..+.+|...+. .+...+..++|+||||- +.+ .+.+
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~ 529 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAA 529 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHH
Confidence 4689999999999999999999874 3455666666554 33345668999999992 111 2345
Q ss_pred HHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEeccc
Q 046721 138 AKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLI 217 (1068)
Q Consensus 138 akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~ 217 (1068)
+..||++|+|+|++.+++.++..++..+...|.| +|+|+||+|+... .......+.+...+ .....++++++||++
T Consensus 530 i~~advvilViDat~~~s~~~~~i~~~~~~~~~p-iIiV~NK~DL~~~-~~~~~~~~~~~~~l--~~~~~~~ii~iSAkt 605 (712)
T PRK09518 530 IERSELALFLFDASQPISEQDLKVMSMAVDAGRA-LVLVFNKWDLMDE-FRRQRLERLWKTEF--DRVTWARRVNLSAKT 605 (712)
T ss_pred hhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEEchhcCCh-hHHHHHHHHHHHhc--cCCCCCCEEEEECCC
Confidence 6889999999999999988888888888778998 8999999999853 22233333333332 234578899999996
Q ss_pred CCcCCchhhcchHHHHHHh
Q 046721 218 QGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 218 g~~y~~~ei~nLlR~I~~~ 236 (1068)
| .++..|+..+...
T Consensus 606 g-----~gv~~L~~~i~~~ 619 (712)
T PRK09518 606 G-----WHTNRLAPAMQEA 619 (712)
T ss_pred C-----CCHHHHHHHHHHH
Confidence 6 5566666555443
No 90
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.44 E-value=1.5e-12 Score=155.42 Aligned_cols=146 Identities=21% Similarity=0.230 Sum_probs=101.5
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCCh------h----H-HHHHHH
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPNDI------N----G-MIDCAK 139 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGdl------~----s-mld~ak 139 (1068)
.++.|+|||.||||||||+|+|++.. +...+.+++..+. .....+..+.|+||||.. . . +..++.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 34689999999999999999999863 3334444444333 223345679999999921 1 1 334578
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCC
Q 046721 140 FADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQG 219 (1068)
Q Consensus 140 vADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~ 219 (1068)
.||++|||+|++.+.......++..+...+.| +|+|+||+|+....... .. ++.. ....+|++||++|
T Consensus 117 ~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~p-iilV~NK~Dl~~~~~~~---~~-----~~~~--g~~~~~~iSA~~g- 184 (472)
T PRK03003 117 TADAVLFVVDATVGATATDEAVARVLRRSGKP-VILAANKVDDERGEADA---AA-----LWSL--GLGEPHPVSALHG- 184 (472)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCCccchhh---HH-----HHhc--CCCCeEEEEcCCC-
Confidence 99999999999998877777888888888988 89999999986421111 11 1111 1224579999965
Q ss_pred cCCchhhcchHHHHHHh
Q 046721 220 KYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 220 ~y~~~ei~nLlR~I~~~ 236 (1068)
.++.+|...|...
T Consensus 185 ----~gi~eL~~~i~~~ 197 (472)
T PRK03003 185 ----RGVGDLLDAVLAA 197 (472)
T ss_pred ----CCcHHHHHHHHhh
Confidence 5667777666544
No 91
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.44 E-value=1.7e-12 Score=138.72 Aligned_cols=148 Identities=19% Similarity=0.284 Sum_probs=101.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccC------------CCC----ceeccEEE-------E----eCCCeeEEEEeCCC
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKL------------KVP----EVRGPVTV-------V----SGKKRRLQFVECPN 129 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~------------~~~----tt~~~Iti-------~----~~~k~rl~fIDtPG 129 (1068)
+.|+|+|++++|||||+++|+...... ... +....+++ . ......+.|+||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 469999999999999999998742110 000 01112222 1 12357899999999
Q ss_pred C--hh-HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC------cH---HHHHHHHHHHH
Q 046721 130 D--IN-GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT------DK---KKLRKTKQHLK 197 (1068)
Q Consensus 130 d--l~-smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk------~~---k~l~~vkk~Lk 197 (1068)
. +. .+..++..+|++|+|+|++.+...++..++..+...++| +++|+||+|++. .. ..+..+++.+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n 159 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDRLILELKLPPNDAYFKLRHIIDEVN 159 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCcccccCCHHHHHHHHHHHHHHHH
Confidence 4 54 377788999999999999988877777777877777888 889999999861 11 23444555554
Q ss_pred HHhcc--------cccCCCeEEEEecccCCcCCchh
Q 046721 198 HRFGT--------ELYHGAKLFKLSGLIQGKYTKKD 225 (1068)
Q Consensus 198 ~~~~~--------e~~~~~kVf~ISAl~g~~y~~~e 225 (1068)
..+.. +.|....|+..||+.+|.++-..
T Consensus 160 ~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~ 195 (213)
T cd04167 160 NIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLES 195 (213)
T ss_pred HHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHH
Confidence 44421 23445568888999988875443
No 92
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.44 E-value=8.7e-13 Score=133.77 Aligned_cols=150 Identities=14% Similarity=0.217 Sum_probs=90.9
Q ss_pred EEEEECCCCCChhHHHHHHHhcccc------CCCCceecc-EEEEeCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTK------LKVPEVRGP-VTVVSGKKRRLQFVECPND--INGM-IDCAKFADLALLL 147 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~------~~~~tt~~~-Iti~~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlV 147 (1068)
.|+|+|++|+|||||+++|++.... ....++.+. +..+...+..+.++||||. +..+ ...+..||++|||
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 3899999999999999999875321 111111111 1122334789999999994 4453 4457899999999
Q ss_pred EeCCCCCchh-HH-HHHHHHH---hCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 148 IDASHGFEME-TF-EFLNLMQ---NHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 148 IDas~g~e~~-t~-eiL~~L~---~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
+|++..-... .. .+..++. ..++| +|+|+||+|+... .........+............+++++||++|
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g---- 154 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVP-LLILANKQDLPDA-LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG---- 154 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCC-EEEEEEccccccC-CCHHHHHHHhccccccccCCceEEEEeeCCCC----
Confidence 9997542211 11 2222222 35788 8999999998642 11222222222221111223568999999965
Q ss_pred chhhcchHHHHH
Q 046721 223 KKDIGNLAEFIS 234 (1068)
Q Consensus 223 ~~ei~nLlR~I~ 234 (1068)
.++..++..|+
T Consensus 155 -~gv~e~~~~l~ 165 (167)
T cd04160 155 -TGVREGIEWLV 165 (167)
T ss_pred -cCHHHHHHHHh
Confidence 55666665553
No 93
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.43 E-value=1.5e-12 Score=153.02 Aligned_cols=142 Identities=20% Similarity=0.229 Sum_probs=102.8
Q ss_pred EEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCC------hh-----HHHHHHHhcC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPND------IN-----GMIDCAKFAD 142 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd------l~-----smld~akvAD 142 (1068)
.|+|||.||||||||+|+|++.. +...+.+++..+. .....+..+.++||||- +. .+..+++.||
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 38999999999999999999863 3344444544333 23335678999999992 11 1455678999
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 143 LALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 143 lVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
+||||+|+..++...+.+++..|+..+.| +|+|+||+|+....... ..+. . ....++|++||.+|
T Consensus 81 ~vl~vvD~~~~~~~~d~~i~~~l~~~~~p-iilVvNK~D~~~~~~~~----~~~~----~--lg~~~~~~vSa~~g---- 145 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEEIAKWLRKSGKP-VILVANKIDGKKEDAVA----AEFY----S--LGFGEPIPISAEHG---- 145 (429)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCC-EEEEEECccCCcccccH----HHHH----h--cCCCCeEEEeCCcC----
Confidence 99999999999998888999999989998 89999999987532211 1111 1 13457899999976
Q ss_pred chhhcchHHHHHH
Q 046721 223 KKDIGNLAEFISV 235 (1068)
Q Consensus 223 ~~ei~nLlR~I~~ 235 (1068)
.++..++..+..
T Consensus 146 -~gv~~ll~~i~~ 157 (429)
T TIGR03594 146 -RGIGDLLDAILE 157 (429)
T ss_pred -CChHHHHHHHHH
Confidence 455666655543
No 94
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.43 E-value=2.5e-12 Score=142.28 Aligned_cols=120 Identities=23% Similarity=0.360 Sum_probs=85.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCCCeeEEEEeCCCC------------hhHHHHHH
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGKKRRLQFVECPND------------INGMIDCA 138 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd------------l~smld~a 138 (1068)
+--++|+|.|+||||||||+++|++.. +...+.||++-.. +.-.+..++++|||||- .++++...
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 344689999999999999999999985 4567777776333 34455779999999992 22455556
Q ss_pred HhcCEEEEEEeCC--CCCchhHH-HHHHHHHh-CCCCcEEEEEeCCCcCCcHHHHHHHHHH
Q 046721 139 KFADLALLLIDAS--HGFEMETF-EFLNLMQN-HGLPNVMGVLTHLDKFTDKKKLRKTKQH 195 (1068)
Q Consensus 139 kvADlVLlVIDas--~g~e~~t~-eiL~~L~~-~GlP~vIvVLNKiDlvk~~k~l~~vkk~ 195 (1068)
..+++|||++|+| +|++.+.+ .++..+.. ...| +++|+||+|.... ..+.+....
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p-~v~V~nK~D~~~~-e~~~~~~~~ 304 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAP-IVVVINKIDIADE-EKLEEIEAS 304 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCC-eEEEEecccccch-hHHHHHHHH
Confidence 8899999999998 45554443 45555544 3445 8999999999853 344444433
No 95
>PRK13351 elongation factor G; Reviewed
Probab=99.43 E-value=8.6e-12 Score=155.28 Aligned_cols=121 Identities=18% Similarity=0.285 Sum_probs=88.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcccc----------CCCC-----ceeccEEE------EeCCCeeEEEEeCCCC--hh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTK----------LKVP-----EVRGPVTV------VSGKKRRLQFVECPND--IN 132 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~----------~~~~-----tt~~~Iti------~~~~k~rl~fIDtPGd--l~ 132 (1068)
.++|+|+|+.|+|||||+++|+..... .... .....+|+ +...+.+++||||||. +.
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~ 87 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT 87 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH
Confidence 479999999999999999999863210 0000 00112222 2345789999999994 44
Q ss_pred H-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHH
Q 046721 133 G-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHR 199 (1068)
Q Consensus 133 s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~ 199 (1068)
. +..++..+|++|+|+|++.+...++..++..+...++| +++|+||+|+.. ..+..+...++.+
T Consensus 88 ~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~--~~~~~~~~~i~~~ 152 (687)
T PRK13351 88 GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIP-RLIFINKMDRVG--ADLFKVLEDIEER 152 (687)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEECCCCCC--CCHHHHHHHHHHH
Confidence 4 67788999999999999999988888899988889999 788999999875 2344444444443
No 96
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.43 E-value=1.2e-12 Score=151.05 Aligned_cols=141 Identities=23% Similarity=0.345 Sum_probs=109.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc---cccCCCCceeccEE-EEeCCCeeEEEEeCCC-----C------hhHHHHHHHh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH---YTKLKVPEVRGPVT-VVSGKKRRLQFVECPN-----D------INGMIDCAKF 140 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~---~~~~~~~tt~~~It-i~~~~k~rl~fIDtPG-----d------l~smld~akv 140 (1068)
...|+|+|.||||||||+|+|++. .++..+.|||.-+. .+.-.+..+.++||.| | +......++.
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ 296 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEE 296 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHh
Confidence 468999999999999999999997 47888899988766 3445688999999999 2 2346677899
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCc
Q 046721 141 ADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGK 220 (1068)
Q Consensus 141 ADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~ 220 (1068)
||+||||+|++.+.+.+...++. +...+.| +++|+||+|+..+.. ... + ....+.+++++|++++
T Consensus 297 ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~-~i~v~NK~DL~~~~~-~~~--------~--~~~~~~~~i~iSa~t~-- 361 (454)
T COG0486 297 ADLVLFVLDASQPLDKEDLALIE-LLPKKKP-IIVVLNKADLVSKIE-LES--------E--KLANGDAIISISAKTG-- 361 (454)
T ss_pred CCEEEEEEeCCCCCchhhHHHHH-hcccCCC-EEEEEechhcccccc-cch--------h--hccCCCceEEEEecCc--
Confidence 99999999999988888888887 4456677 899999999986432 111 1 2245667999999965
Q ss_pred CCchhhcchHHHHH
Q 046721 221 YTKKDIGNLAEFIS 234 (1068)
Q Consensus 221 y~~~ei~nLlR~I~ 234 (1068)
.++..|...|.
T Consensus 362 ---~Gl~~L~~~i~ 372 (454)
T COG0486 362 ---EGLDALREAIK 372 (454)
T ss_pred ---cCHHHHHHHHH
Confidence 66666666663
No 97
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.7e-12 Score=153.11 Aligned_cols=226 Identities=18% Similarity=0.290 Sum_probs=149.0
Q ss_pred cccCCCCCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEE------EEe------------------CCCeeEE
Q 046721 68 DRSYGEPPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVT------VVS------------------GKKRRLQ 123 (1068)
Q Consensus 68 ~R~~~~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~It------i~~------------------~~k~rl~ 123 (1068)
++....-..+++||+||.++|||-|+..|.+..+... .-|+|| .+. .+.-.+.
T Consensus 467 ~~~~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqeg---eaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~l 543 (1064)
T KOG1144|consen 467 NESTENLRSPICCILGHVDTGKTKLLDKIRGTNVQEG---EAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLL 543 (1064)
T ss_pred cccchhcCCceEEEeecccccchHHHHHhhccccccc---cccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeE
Confidence 3333334456899999999999999999988632110 012222 100 0122588
Q ss_pred EEeCCC--ChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcH-----HHH------
Q 046721 124 FVECPN--DING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDK-----KKL------ 189 (1068)
Q Consensus 124 fIDtPG--dl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~-----k~l------ 189 (1068)
+||||| .|.. --.....||++|||||..+|++++|.+-|++|+....| +|++|||+|.+..+ ..+
T Consensus 544 vIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktp-FivALNKiDRLYgwk~~p~~~i~~~lkk 622 (1064)
T KOG1144|consen 544 VIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTP-FIVALNKIDRLYGWKSCPNAPIVEALKK 622 (1064)
T ss_pred EecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCC-eEEeehhhhhhcccccCCCchHHHHHHH
Confidence 999999 3444 23457899999999999999999999999999999999 78999999986321 111
Q ss_pred --HHHHHHHHHHhc------------cc-------ccCCCeEEEEecccCCcCCchhhcchHHHHHHhhccccc----cc
Q 046721 190 --RKTKQHLKHRFG------------TE-------LYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLS----WR 244 (1068)
Q Consensus 190 --~~vkk~Lk~~~~------------~e-------~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~----wR 244 (1068)
+.+...++.|+. .. ......++|.||..| .++.+|+-+|......... +-
T Consensus 623 Q~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sG-----eGipdLl~llv~ltQk~m~~kl~y~ 697 (1064)
T KOG1144|consen 623 QKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISG-----EGIPDLLLLLVQLTQKTMVEKLAYV 697 (1064)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccC-----CCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 122222332221 11 113456889999855 7888898888766553322 11
Q ss_pred -ccCCeEEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCCCeeEEeeecCCCCCCCCh
Q 046721 245 -TSHPYILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAGDYSLAGVTGLADPCPLPS 315 (1068)
Q Consensus 245 -~~rPylLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~GdfqIk~I~~~~DP~pl~~ 315 (1068)
.....+|-..+ + + +.|+ +|--.+.-+.|+.|+.|.++|.+|-.+..|..+.-|.||..
T Consensus 698 ~ev~cTVlEVKv--i---------e-G~Gt-TIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkE 756 (1064)
T KOG1144|consen 698 DEVQCTVLEVKV--I---------E-GHGT-TIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKE 756 (1064)
T ss_pred hheeeEEEEEEe--e---------c-CCCc-eEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHh
Confidence 11244444433 2 1 2333 12223444558899999999999999999999999999886
No 98
>PRK12739 elongation factor G; Reviewed
Probab=99.42 E-value=9.4e-12 Score=154.85 Aligned_cols=122 Identities=16% Similarity=0.241 Sum_probs=90.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc--cC-------------CCCceeccEEE------EeCCCeeEEEEeCCC--Chh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT--KL-------------KVPEVRGPVTV------VSGKKRRLQFVECPN--DIN 132 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~--~~-------------~~~tt~~~Iti------~~~~k~rl~fIDtPG--dl~ 132 (1068)
.++|+|||++|+|||||+++|+.... .. ...+...++|+ +...+.+++|||||| ++.
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~ 87 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFT 87 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHH
Confidence 57899999999999999999986311 00 00111223332 224578999999999 333
Q ss_pred -HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHh
Q 046721 133 -GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRF 200 (1068)
Q Consensus 133 -smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~ 200 (1068)
.+..++..+|++|||||+..|++.++..++..+...|+| +|+++||+|+... .+..+.+.++..+
T Consensus 88 ~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p-~iv~iNK~D~~~~--~~~~~~~~i~~~l 153 (691)
T PRK12739 88 IEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVP-RIVFVNKMDRIGA--DFFRSVEQIKDRL 153 (691)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCCCCC--CHHHHHHHHHHHh
Confidence 478889999999999999999999999999999999999 6899999999852 2344445554443
No 99
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.41 E-value=6.9e-12 Score=130.86 Aligned_cols=148 Identities=20% Similarity=0.305 Sum_probs=99.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc-c---cCCCCceeccEEEEeCCCeeEEEEeCCCCh------------hHH----
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY-T---KLKVPEVRGPVTVVSGKKRRLQFVECPNDI------------NGM---- 134 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~-~---~~~~~tt~~~Iti~~~~k~rl~fIDtPGdl------------~sm---- 134 (1068)
..+.|+|||.+|+|||||+|+|++.. . ...+.++.. +.... ...++.|+||||.. ..+
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~-~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 100 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQL-INFFE-VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeE-EEEEe-cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence 34679999999999999999999852 1 222333322 22222 24689999999921 111
Q ss_pred HHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 135 IDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 135 ld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
+..+..++++++|+|++.++.....+++..+...++| +++|+||+|+... .........+...+... ..+++++|
T Consensus 101 ~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~-~iiv~nK~Dl~~~-~~~~~~~~~i~~~l~~~---~~~~~~~S 175 (196)
T PRK00454 101 LRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIP-VLIVLTKADKLKK-GERKKQLKKVRKALKFG---DDEVILFS 175 (196)
T ss_pred HHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCc-EEEEEECcccCCH-HHHHHHHHHHHHHHHhc---CCceEEEE
Confidence 2223455789999999888776666777778778988 7899999999863 33344444444444222 56899999
Q ss_pred cccCCcCCchhhcchHHHHH
Q 046721 215 GLIQGKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 215 Al~g~~y~~~ei~nLlR~I~ 234 (1068)
|+++ ..+..+...|.
T Consensus 176 a~~~-----~gi~~l~~~i~ 190 (196)
T PRK00454 176 SLKK-----QGIDELRAAIA 190 (196)
T ss_pred cCCC-----CCHHHHHHHHH
Confidence 9965 55666666654
No 100
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.40 E-value=5.5e-12 Score=143.75 Aligned_cols=146 Identities=23% Similarity=0.251 Sum_probs=96.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCC-CeeEEEEeCCCCh---------h-HHHHHHHhcC
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGK-KRRLQFVECPNDI---------N-GMIDCAKFAD 142 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~-k~rl~fIDtPGdl---------~-smld~akvAD 142 (1068)
.-|+|||+||||||||+|+|++.. +...+.||..+.. ++... ..+++|+||||-+ . ..+..+..||
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 358999999999999999999863 2334455555444 33333 4899999999932 2 3567778899
Q ss_pred EEEEEEeCCCC---CchhHH-HHHHHHHh-----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEE
Q 046721 143 LALLLIDASHG---FEMETF-EFLNLMQN-----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKL 213 (1068)
Q Consensus 143 lVLlVIDas~g---~e~~t~-eiL~~L~~-----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~I 213 (1068)
++|+|+|++.. -..+.. .++..|.. ...| +|+|+||+|+... ..+....+.+.+.+ +.++|++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp-~IIV~NK~DL~~~-~~~~~~~~~l~~~~------~~~vi~i 309 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKP-RIVVLNKIDLLDE-EELAELLKELKKAL------GKPVFPI 309 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCC-EEEEEeCccCCCh-HHHHHHHHHHHHHc------CCcEEEE
Confidence 99999999853 111122 23333322 2566 7899999999763 33444444443322 3579999
Q ss_pred ecccCCcCCchhhcchHHHHHH
Q 046721 214 SGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 214 SAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
||+++ ..+..|...|..
T Consensus 310 SAktg-----~GI~eL~~~I~~ 326 (329)
T TIGR02729 310 SALTG-----EGLDELLYALAE 326 (329)
T ss_pred EccCC-----cCHHHHHHHHHH
Confidence 99854 566777666643
No 101
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.39 E-value=1.1e-11 Score=155.24 Aligned_cols=221 Identities=15% Similarity=0.185 Sum_probs=138.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc--cC-----------CCCceeccEEEE----------eCCCeeEEEEeCCC--C
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT--KL-----------KVPEVRGPVTVV----------SGKKRRLQFVECPN--D 130 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~--~~-----------~~~tt~~~Iti~----------~~~k~rl~fIDtPG--d 130 (1068)
.++|+|+|+.++|||||+.+|+.... .. ...+....||+. ...+..++|||||| +
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence 57899999999999999999986420 00 000111223321 12367899999999 5
Q ss_pred hhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC-----cHHH----HHHHHHHHHH--
Q 046721 131 ING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT-----DKKK----LRKTKQHLKH-- 198 (1068)
Q Consensus 131 l~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk-----~~k~----l~~vkk~Lk~-- 198 (1068)
|.. +..++..+|++|+|||+..|+..++..++..+...|+| +|+++||+|+.. .... +..+...+..
T Consensus 100 f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~-~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~l 178 (731)
T PRK07560 100 FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVK-PVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKLI 178 (731)
T ss_pred hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCC-eEEEEECchhhcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 554 77889999999999999999999999999988888998 588999999862 1111 2222222211
Q ss_pred --Hh-------cccccCCCeEEEEecccCCcCCchhh-----------------------------cchHHHHHHhhccc
Q 046721 199 --RF-------GTELYHGAKLFKLSGLIQGKYTKKDI-----------------------------GNLAEFISVMKFHS 240 (1068)
Q Consensus 199 --~~-------~~e~~~~~kVf~ISAl~g~~y~~~ei-----------------------------~nLlR~I~~~k~r~ 240 (1068)
+. |...+....|++.||+.+|.+.-... ..|+..|+...|.|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~lPsP 258 (731)
T PRK07560 179 KGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHLPNP 258 (731)
T ss_pred HHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhCCCh
Confidence 11 11112334577789988765541111 14667777766766
Q ss_pred cc---------ccc---------------cCCeEEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecC
Q 046721 241 LS---------WRT---------------SHPYILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGA 296 (1068)
Q Consensus 241 l~---------wR~---------------~rPylLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~ 296 (1068)
.. |.. ..|.+ + .+..+.. .+ ..|. .++|.|..+.|+.|+.|.+.+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~-a-~VfK~~~------d~-~~G~-va~~RV~sGtL~~Gd~v~~~~~ 328 (731)
T PRK07560 259 IEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLV-M-MVTDIIV------DP-HAGE-VATGRVFSGTLRKGQEVYLVGA 328 (731)
T ss_pred hhhhhhcccccccCCCCccccceeeccCCCCCEE-E-EEEeeEE------cC-CCCe-EEEEEEEEeEEcCCCEEEEcCC
Confidence 42 110 11221 1 1111110 11 1344 4788999999999999988776
Q ss_pred C-CeeEEeeecC
Q 046721 297 G-DYSLAGVTGL 307 (1068)
Q Consensus 297 G-dfqIk~I~~~ 307 (1068)
| ...|.+|...
T Consensus 329 ~~~~~v~~i~~~ 340 (731)
T PRK07560 329 KKKNRVQQVGIY 340 (731)
T ss_pred CCceEeheehhh
Confidence 5 4566666544
No 102
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.39 E-value=3.8e-12 Score=138.76 Aligned_cols=128 Identities=17% Similarity=0.297 Sum_probs=95.0
Q ss_pred EEEEECCCCCChhHHHHHHHhcccc----------CC-----CCceeccEEE------EeCCCeeEEEEeCCC--ChhH-
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTK----------LK-----VPEVRGPVTV------VSGKKRRLQFVECPN--DING- 133 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~----------~~-----~~tt~~~Iti------~~~~k~rl~fIDtPG--dl~s- 133 (1068)
+|+|+|++|+|||||+++|+..... .. ..+....+++ +...+.+++|+|||| ++..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4899999999999999999874210 00 0011122222 234578999999999 4443
Q ss_pred HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEE
Q 046721 134 MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKL 213 (1068)
Q Consensus 134 mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~I 213 (1068)
+..+++.+|++|||+|++.++..++..++..+...|+| +|+|+||+|+... ....+...++..| +.+++++
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P-~iivvNK~D~~~a--~~~~~~~~i~~~~------~~~~~~~ 151 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIP-TIIFVNKIDRAGA--DLEKVYQEIKEKL------SSDIVPM 151 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccccCC--CHHHHHHHHHHHH------CCCeEEE
Confidence 77788999999999999999988888999999999999 6889999998752 3456777777776 4556665
Q ss_pred e
Q 046721 214 S 214 (1068)
Q Consensus 214 S 214 (1068)
.
T Consensus 152 ~ 152 (237)
T cd04168 152 Q 152 (237)
T ss_pred E
Confidence 4
No 103
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.39 E-value=5.4e-12 Score=139.93 Aligned_cols=121 Identities=15% Similarity=0.272 Sum_probs=88.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhcccc-CCC----------Cc--------eeccEE------EEeCCCeeEEEEeCCCC-
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTK-LKV----------PE--------VRGPVT------VVSGKKRRLQFVECPND- 130 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~-~~~----------~t--------t~~~It------i~~~~k~rl~fIDtPGd- 130 (1068)
++|+|+|++|+|||||+++|+..... ... .+ ....++ .+...+.++.|+||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 68999999999999999999864100 000 00 011222 12346789999999994
Q ss_pred -hhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHh
Q 046721 131 -ING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRF 200 (1068)
Q Consensus 131 -l~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~ 200 (1068)
+.. +..++..+|++|+|+|++.+++.++..++..+...++| +|+|+||+|+... ....+...+++.+
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P-~iivvNK~D~~~a--~~~~~~~~l~~~l 151 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIP-IITFINKLDREGR--DPLELLDEIEEEL 151 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCC-EEEEEECCccCCC--CHHHHHHHHHHHH
Confidence 444 77788999999999999999988888888888888999 7889999998642 2334455566555
No 104
>PRK11058 GTPase HflX; Provisional
Probab=99.39 E-value=7.8e-12 Score=146.97 Aligned_cols=145 Identities=17% Similarity=0.158 Sum_probs=94.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE--EEeCCCeeEEEEeCCCC-----------hhHHHHHHHhc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT--VVSGKKRRLQFVECPND-----------INGMIDCAKFA 141 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It--i~~~~k~rl~fIDtPGd-----------l~smld~akvA 141 (1068)
+.|+|||.||||||||+|+|++.. +...+.+|..+.+ +.......++|+||||- |.+++..+..|
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 368999999999999999999863 2333444444443 22233448899999993 33456667899
Q ss_pred CEEEEEEeCCCCCchhHH----HHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEeccc
Q 046721 142 DLALLLIDASHGFEMETF----EFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLI 217 (1068)
Q Consensus 142 DlVLlVIDas~g~e~~t~----eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~ 217 (1068)
|++|+|+|++.+...... .+|..+...++| +|+|+||+|+...... .. .. . . .....++++||++
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~p-vIiV~NKiDL~~~~~~--~~-~~---~---~-~~~~~~v~ISAkt 346 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIP-TLLVMNKIDMLDDFEP--RI-DR---D---E-ENKPIRVWLSAQT 346 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCC-EEEEEEcccCCCchhH--HH-HH---H---h-cCCCceEEEeCCC
Confidence 999999999876433322 345544445677 8999999999753111 11 10 0 0 0112258899996
Q ss_pred CCcCCchhhcchHHHHHHhh
Q 046721 218 QGKYTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 218 g~~y~~~ei~nLlR~I~~~k 237 (1068)
| .++..|...|....
T Consensus 347 G-----~GIdeL~e~I~~~l 361 (426)
T PRK11058 347 G-----AGIPLLFQALTERL 361 (426)
T ss_pred C-----CCHHHHHHHHHHHh
Confidence 5 56677776665543
No 105
>PRK04213 GTP-binding protein; Provisional
Probab=99.39 E-value=1.1e-11 Score=130.50 Aligned_cols=148 Identities=20% Similarity=0.238 Sum_probs=91.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc--cCCCCceeccEEEEeCCCeeEEEEeCCCC-------------hhHH----H-
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT--KLKVPEVRGPVTVVSGKKRRLQFVECPND-------------INGM----I- 135 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~--~~~~~tt~~~Iti~~~~k~rl~fIDtPGd-------------l~sm----l- 135 (1068)
...|+|+|++|||||||+|+|++... ...+.++...+.+.. ..++++||||. +..+ +
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDW---GDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIE 85 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEee---cceEEEeCCccccccccCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999998642 122233333222221 26999999992 1111 1
Q ss_pred HHHHhcCEEEEEEeCCCCC-----------chhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcc--
Q 046721 136 DCAKFADLALLLIDASHGF-----------EMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGT-- 202 (1068)
Q Consensus 136 d~akvADlVLlVIDas~g~-----------e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~-- 202 (1068)
..+..+|+|++|+|++... ...+.+++..+...++| +|+|+||+|+.... ......+...+..
T Consensus 86 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 86 DNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP-PIVAVNKMDKIKNR---DEVLDEIAERLGLYP 161 (201)
T ss_pred hhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC-eEEEEECccccCcH---HHHHHHHHHHhcCCc
Confidence 2456689999999996421 11235667777778999 79999999997532 1122233332211
Q ss_pred cc-cCCCeEEEEecccCCcCCchhhcchHHHHHHh
Q 046721 203 EL-YHGAKLFKLSGLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 203 e~-~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~ 236 (1068)
.+ ..+.++|++||++ . ++..+...|...
T Consensus 162 ~~~~~~~~~~~~SA~~-----g-gi~~l~~~l~~~ 190 (201)
T PRK04213 162 PWRQWQDIIAPISAKK-----G-GIEELKEAIRKR 190 (201)
T ss_pred cccccCCcEEEEeccc-----C-CHHHHHHHHHHh
Confidence 00 0123689999984 3 566666666443
No 106
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.38 E-value=8.8e-12 Score=142.31 Aligned_cols=209 Identities=20% Similarity=0.237 Sum_probs=146.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcccc--------CCCCc----eeccEEEE-----------eCCCeeEEEEeCCC--C
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTK--------LKVPE----VRGPVTVV-----------SGKKRRLQFVECPN--D 130 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~--------~~~~t----t~~~Iti~-----------~~~k~rl~fIDtPG--d 130 (1068)
-++.+||.|-++|||||..+|+..... +...+ ...+|||- .+....+.|||||| |
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD 88 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 88 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence 367899999999999999999874210 11110 12345531 12357889999999 4
Q ss_pred hh-HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCe
Q 046721 131 IN-GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAK 209 (1068)
Q Consensus 131 l~-smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~k 209 (1068)
|. .+-+.+..|..+||||||+.|++.||..-.-++..+++- +|.|+||+|+.. .+..++++.+.+.+ ..+...
T Consensus 89 FsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~Le-IiPViNKIDLP~--Adpervk~eIe~~i---Gid~~d 162 (603)
T COG0481 89 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPA--ADPERVKQEIEDII---GIDASD 162 (603)
T ss_pred eEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcE-EEEeeecccCCC--CCHHHHHHHHHHHh---CCCcch
Confidence 54 366777788899999999999999998655555678887 899999999974 34556677766654 234556
Q ss_pred EEEEecccCCcCCchhhcchHHHHHHhhcccccccccCCe--EEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecC
Q 046721 210 LFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWRTSHPY--ILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKK 287 (1068)
Q Consensus 210 Vf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR~~rPy--lLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~ 287 (1068)
.+.+||++| -++..++..|....|.|. -....|. ++.+.+.|- ..|.+++. .|--+.+++
T Consensus 163 av~~SAKtG-----~gI~~iLe~Iv~~iP~P~-g~~~~pLkALifDS~yD~-----------Y~GVv~~v-Ri~dG~ik~ 224 (603)
T COG0481 163 AVLVSAKTG-----IGIEDVLEAIVEKIPPPK-GDPDAPLKALIFDSWYDN-----------YLGVVVLV-RIFDGTLKK 224 (603)
T ss_pred heeEecccC-----CCHHHHHHHHHhhCCCCC-CCCCCcceEEEEeccccc-----------cceEEEEE-EEeeceecC
Confidence 788999976 677888888877777665 3444554 566655332 23444333 333455899
Q ss_pred CcEEEEecCC-CeeEEeeecCC
Q 046721 288 GTKVHIAGAG-DYSLAGVTGLA 308 (1068)
Q Consensus 288 nqlVhIpG~G-dfqIk~I~~~~ 308 (1068)
|++|.+-+.| .|.+.+++...
T Consensus 225 gdki~~m~tg~~y~V~evGvft 246 (603)
T COG0481 225 GDKIRMMSTGKEYEVDEVGIFT 246 (603)
T ss_pred CCEEEEEecCCEEEEEEEeecc
Confidence 9999987776 78999998763
No 107
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.38 E-value=5.7e-12 Score=148.65 Aligned_cols=143 Identities=19% Similarity=0.210 Sum_probs=100.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCCh------h----H-HHHHHHhc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPNDI------N----G-MIDCAKFA 141 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGdl------~----s-mld~akvA 141 (1068)
+.|+|||.+|||||||+|+|++.. +...+.+++.... .....+..+.++||||.. . . +..++..|
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 369999999999999999999864 3334444443332 233345789999999932 1 1 34567899
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 142 DLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 142 DlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
|++|||+|++.++.....+++..|...+.| +|+|+||+|+....... ..+ +. .....++++||.+|
T Consensus 82 d~il~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~D~~~~~~~~----~~~----~~--lg~~~~~~iSa~~g--- 147 (435)
T PRK00093 82 DVILFVVDGRAGLTPADEEIAKILRKSNKP-VILVVNKVDGPDEEADA----YEF----YS--LGLGEPYPISAEHG--- 147 (435)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCc-EEEEEECccCccchhhH----HHH----Hh--cCCCCCEEEEeeCC---
Confidence 999999999999888888888888888998 89999999975421111 111 11 12335799999865
Q ss_pred CchhhcchHHHHHH
Q 046721 222 TKKDIGNLAEFISV 235 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~ 235 (1068)
.++..+...|..
T Consensus 148 --~gv~~l~~~I~~ 159 (435)
T PRK00093 148 --RGIGDLLDAILE 159 (435)
T ss_pred --CCHHHHHHHHHh
Confidence 556666666644
No 108
>PRK09866 hypothetical protein; Provisional
Probab=99.38 E-value=1.3e-11 Score=147.00 Aligned_cols=99 Identities=11% Similarity=0.176 Sum_probs=74.8
Q ss_pred CeeEEEEeCCCC-------hhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCC--CcEEEEEeCCCcCCcHH-
Q 046721 119 KRRLQFVECPND-------ING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGL--PNVMGVLTHLDKFTDKK- 187 (1068)
Q Consensus 119 k~rl~fIDtPGd-------l~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~Gl--P~vIvVLNKiDlvk~~k- 187 (1068)
..+++||||||- ++. |.+.+..||+||||+|+..++......+++.+...|. | +|+|+||+|+.+...
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~P-VILVVNKIDl~dreed 307 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVP-LYVLVNKFDQQDRNSD 307 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCC-EEEEEEcccCCCcccc
Confidence 358999999991 343 7888999999999999998888888889999988774 6 899999999974221
Q ss_pred HHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 188 KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 188 ~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
....+...+...+.....+...||||||+.|
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG 338 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWG 338 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Confidence 1233444444333344456889999999966
No 109
>PRK00007 elongation factor G; Reviewed
Probab=99.38 E-value=3.3e-12 Score=158.82 Aligned_cols=138 Identities=13% Similarity=0.170 Sum_probs=101.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc--cC-------------CCCceeccEEE------EeCCCeeEEEEeCCCC--hh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT--KL-------------KVPEVRGPVTV------VSGKKRRLQFVECPND--IN 132 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~--~~-------------~~~tt~~~Iti------~~~~k~rl~fIDtPGd--l~ 132 (1068)
-++|+|||++|+|||||+++|+.... .. ...+...++|+ ....+.+++||||||. +.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~ 89 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT 89 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH
Confidence 47999999999999999999984210 00 00001122332 2245789999999993 33
Q ss_pred -HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEE
Q 046721 133 -GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLF 211 (1068)
Q Consensus 133 -smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf 211 (1068)
.+..++..+|++|||||+..|++.++..++..+...|+| +|+|+||+|+... .+..+...+++.+.. .....++
T Consensus 90 ~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p-~iv~vNK~D~~~~--~~~~~~~~i~~~l~~--~~~~~~i 164 (693)
T PRK00007 90 IEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVP-RIAFVNKMDRTGA--DFYRVVEQIKDRLGA--NPVPIQL 164 (693)
T ss_pred HHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCC-EEEEEECCCCCCC--CHHHHHHHHHHHhCC--CeeeEEe
Confidence 488889999999999999999999999999999999999 6899999999853 355666777666522 2334567
Q ss_pred EEecccC
Q 046721 212 KLSGLIQ 218 (1068)
Q Consensus 212 ~ISAl~g 218 (1068)
|+|+..+
T Consensus 165 pisa~~~ 171 (693)
T PRK00007 165 PIGAEDD 171 (693)
T ss_pred cCccCCc
Confidence 7776543
No 110
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.38 E-value=5.2e-12 Score=127.56 Aligned_cols=147 Identities=13% Similarity=0.131 Sum_probs=90.3
Q ss_pred EEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEEEeCCCCCc
Q 046721 79 VVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--INGMI-DCAKFADLALLLIDASHGFE 155 (1068)
Q Consensus 79 VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~sml-d~akvADlVLlVIDas~g~e 155 (1068)
|+|+|++++|||||+++|+.........+..-.+........++.|+||||. +..+. ..+..||++|+|+|++....
T Consensus 2 v~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~ 81 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDR 81 (158)
T ss_pred EEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHH
Confidence 7899999999999999997653222222221222223345678999999994 55544 45789999999999986422
Q ss_pred --hhHHHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchH
Q 046721 156 --METFEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLA 230 (1068)
Q Consensus 156 --~~t~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLl 230 (1068)
.....+...++. .+.| +++|+||+|+.... ....+...+... .......++|++||+++ .++..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~-~~~~i~~~~~~~--~~~~~~~~~~~~Sa~~~-----~gi~~l~ 152 (158)
T cd04151 82 LGTAKEELHAMLEEEELKGAV-LLVFANKQDMPGAL-SEAEISEKLGLS--ELKDRTWSIFKTSAIKG-----EGLDEGM 152 (158)
T ss_pred HHHHHHHHHHHHhchhhcCCc-EEEEEeCCCCCCCC-CHHHHHHHhCcc--ccCCCcEEEEEeeccCC-----CCHHHHH
Confidence 112234444432 3667 89999999987522 122222222100 00112347999999865 5666666
Q ss_pred HHHH
Q 046721 231 EFIS 234 (1068)
Q Consensus 231 R~I~ 234 (1068)
..|+
T Consensus 153 ~~l~ 156 (158)
T cd04151 153 DWLV 156 (158)
T ss_pred HHHh
Confidence 5553
No 111
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.38 E-value=7.5e-12 Score=146.57 Aligned_cols=143 Identities=20% Similarity=0.240 Sum_probs=95.5
Q ss_pred EEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCC-CeeEEEEeCCCCh----------hHHHHHHHhcCE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGK-KRRLQFVECPNDI----------NGMIDCAKFADL 143 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~-k~rl~fIDtPGdl----------~smld~akvADl 143 (1068)
-|++||+||||||||||+|++.. +...+.||..+.. ++... ..+++|+|+||-+ ...+..+..+|+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 69999999999999999999874 2344566665544 33333 6789999999932 235677788999
Q ss_pred EEEEEeCCCC--Cch-hH-HHHHHHHHh-----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 144 ALLLIDASHG--FEM-ET-FEFLNLMQN-----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 144 VLlVIDas~g--~e~-~t-~eiL~~L~~-----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
+|+|||++.. -+. +. ..++..|.. .+.| +|+|+||+|+......+ +.+...+ ..++|++|
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP-~IVV~NK~DL~~~~e~l----~~l~~~l------~~~i~~iS 308 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERP-QIVVANKMDLPEAEENL----EEFKEKL------GPKVFPIS 308 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCc-EEEEEeCCCCcCCHHHH----HHHHHHh------CCcEEEEe
Confidence 9999999742 111 12 234444443 3667 78999999985322222 2232222 15799999
Q ss_pred cccCCcCCchhhcchHHHHHHh
Q 046721 215 GLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 215 Al~g~~y~~~ei~nLlR~I~~~ 236 (1068)
|+++ ..+..|...|...
T Consensus 309 A~tg-----eGI~eL~~~L~~~ 325 (424)
T PRK12297 309 ALTG-----QGLDELLYAVAEL 325 (424)
T ss_pred CCCC-----CCHHHHHHHHHHH
Confidence 9865 6667777666543
No 112
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.38 E-value=7e-12 Score=156.44 Aligned_cols=145 Identities=17% Similarity=0.244 Sum_probs=103.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEEE-EeCCCeeEEEEeCCCC------hh-----HHHHHHHhc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVTV-VSGKKRRLQFVECPND------IN-----GMIDCAKFA 141 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~Iti-~~~~k~rl~fIDtPGd------l~-----smld~akvA 141 (1068)
..|+|||.||||||||+|+|++.. +...+.+|+..+.. .......+.||||||- +. .+..++..|
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 355 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLA 355 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhC
Confidence 579999999999999999999863 33445555544442 2234678999999992 22 144567899
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 142 DLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 142 DlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
|++|||+|++.++......++..|...+.| +|+|+||+|+....... .. ++.. ....+|++||++|
T Consensus 356 D~iL~VvDa~~~~~~~d~~i~~~Lr~~~~p-vIlV~NK~D~~~~~~~~---~~-----~~~l--g~~~~~~iSA~~g--- 421 (712)
T PRK09518 356 DAVVFVVDGQVGLTSTDERIVRMLRRAGKP-VVLAVNKIDDQASEYDA---AE-----FWKL--GLGEPYPISAMHG--- 421 (712)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECcccccchhhH---HH-----HHHc--CCCCeEEEECCCC---
Confidence 999999999999888888888989889999 89999999986421111 11 1111 2234689999966
Q ss_pred CchhhcchHHHHHHhh
Q 046721 222 TKKDIGNLAEFISVMK 237 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~~k 237 (1068)
.++..|+..|....
T Consensus 422 --~GI~eLl~~i~~~l 435 (712)
T PRK09518 422 --RGVGDLLDEALDSL 435 (712)
T ss_pred --CCchHHHHHHHHhc
Confidence 56777776665443
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.37 E-value=4.4e-12 Score=127.58 Aligned_cols=148 Identities=16% Similarity=0.189 Sum_probs=89.2
Q ss_pred EEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEEeCCC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVTVVSGKKRRLQFVECPND--INGM-IDCAKFADLALLLIDASH 152 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVIDas~ 152 (1068)
.|+++|.+|||||||+++|++.. .....++....+........++.++||||. +..+ ...++.+|++|||+|++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 37899999999999999999862 222222221112223345778999999994 4444 345689999999999986
Q ss_pred CCchhH--HHHHHHHH-----hCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchh
Q 046721 153 GFEMET--FEFLNLMQ-----NHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKD 225 (1068)
Q Consensus 153 g~e~~t--~eiL~~L~-----~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~e 225 (1068)
+..... ..+..++. ..++| +++|+||+|+.... ....+...+. +........++|++||++| .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~-~~~~~~~~l~--~~~~~~~~~~~~~~Sa~~g-----~g 151 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDAL-TAVKITQLLG--LENIKDKPWHIFASNALTG-----EG 151 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCC-EEEEEeCccccCCC-CHHHHHHHhC--CccccCceEEEEEeeCCCC-----Cc
Confidence 543211 12222222 24677 89999999987521 1112222111 0000111236899999865 56
Q ss_pred hcchHHHHH
Q 046721 226 IGNLAEFIS 234 (1068)
Q Consensus 226 i~nLlR~I~ 234 (1068)
+..+...|.
T Consensus 152 v~~~~~~l~ 160 (162)
T cd04157 152 LDEGVQWLQ 160 (162)
T ss_pred hHHHHHHHh
Confidence 666666554
No 114
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.37 E-value=4.3e-12 Score=125.77 Aligned_cols=132 Identities=18% Similarity=0.278 Sum_probs=84.1
Q ss_pred EEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC-------hhHHHHHHHhcCEEEEEEeC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND-------INGMIDCAKFADLALLLIDA 150 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd-------l~smld~akvADlVLlVIDa 150 (1068)
.|+|||.+|||||||+|+|++..... .. .+.+.... .++||||. +.++...++.||++|+|+|+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~-~~----t~~~~~~~----~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~ 72 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILY-KK----TQAVEYND----GAIDTPGEYVENRRLYSALIVTAADADVIALVQSA 72 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcccc-cc----ceeEEEcC----eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecC
Confidence 58999999999999999999874321 11 11121111 68999995 22355667899999999999
Q ss_pred CCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchH
Q 046721 151 SHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLA 230 (1068)
Q Consensus 151 s~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLl 230 (1068)
+.+.......++..+ +.| +|+|+||+|+...........+.++.. ...++|++||+++ .++..+.
T Consensus 73 ~~~~s~~~~~~~~~~---~~p-~ilv~NK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~-----~gi~~l~ 137 (142)
T TIGR02528 73 TDPESRFPPGFASIF---VKP-VIGLVTKIDLAEADVDIERAKELLETA------GAEPIFEISSVDE-----QGLEALV 137 (142)
T ss_pred CCCCcCCChhHHHhc---cCC-eEEEEEeeccCCcccCHHHHHHHHHHc------CCCcEEEEecCCC-----CCHHHHH
Confidence 877654444444332 346 788999999874221122222222221 2347899999865 5555555
Q ss_pred HHH
Q 046721 231 EFI 233 (1068)
Q Consensus 231 R~I 233 (1068)
..|
T Consensus 138 ~~l 140 (142)
T TIGR02528 138 DYL 140 (142)
T ss_pred HHH
Confidence 544
No 115
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.37 E-value=1.1e-11 Score=124.89 Aligned_cols=145 Identities=18% Similarity=0.232 Sum_probs=89.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc-cCCCCceeccEE--E-EeCCCeeEEEEeCCC--ChhHHH-HHHHhcCEEEEEEe
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT-KLKVPEVRGPVT--V-VSGKKRRLQFVECPN--DINGMI-DCAKFADLALLLID 149 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~-~~~~~tt~~~It--i-~~~~k~rl~fIDtPG--dl~sml-d~akvADlVLlVID 149 (1068)
..|+|+|.+|+|||||++++++... .....++...++ + +.+...++.++|||| .+..+. ..++.+|++|+|+|
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 82 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFS 82 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 5799999999999999999988642 222222221112 1 223345788999999 455554 45789999999999
Q ss_pred CCCCCchhHH-H----HHHHHHhCCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 150 ASHGFEMETF-E----FLNLMQNHGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 150 as~g~e~~t~-e----iL~~L~~~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
++....-... . ++......++| +|+|+||+|+..... ......+ +... .+.++|.+||++|
T Consensus 83 ~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~~~~~~~~~~~-~~~~------~~~~~~~~Sa~~~----- 149 (164)
T cd04145 83 VTDRGSFEEVDKFHTQILRVKDRDEFP-MILVGNKADLEHQRKVSREEGQE-LARK------LKIPYIETSAKDR----- 149 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCC-EEEEeeCccccccceecHHHHHH-HHHH------cCCcEEEeeCCCC-----
Confidence 9864321111 1 22222224677 899999999875321 1111111 1111 1457899999865
Q ss_pred hhhcchHHHHH
Q 046721 224 KDIGNLAEFIS 234 (1068)
Q Consensus 224 ~ei~nLlR~I~ 234 (1068)
..+..+...|+
T Consensus 150 ~~i~~l~~~l~ 160 (164)
T cd04145 150 LNVDKAFHDLV 160 (164)
T ss_pred CCHHHHHHHHH
Confidence 56666665554
No 116
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.36 E-value=7.7e-12 Score=127.85 Aligned_cols=139 Identities=15% Similarity=0.223 Sum_probs=91.0
Q ss_pred EEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC------h-hHHHHHHHhcCEEEEEEeC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND------I-NGMIDCAKFADLALLLIDA 150 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd------l-~smld~akvADlVLlVIDa 150 (1068)
.|++||++|+|||||+|+|.+..... .. .+ .+..... .+|||||. + ..++.+++.||++|||+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~-~~--~v~~~~~---~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--RK-TQ--AVEFNDK---GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--cc-ce--EEEECCC---CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 69999999999999999999875311 11 11 1111111 26999993 2 2367778999999999999
Q ss_pred CCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchH
Q 046721 151 SHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLA 230 (1068)
Q Consensus 151 s~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLl 230 (1068)
+.+.......++.. ..+.| +++|+||+|+... ......+.++.. ....++|++||+++ .++..|.
T Consensus 75 ~~~~s~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~--~~~~~~~~~~~~-----~~~~p~~~~Sa~~g-----~gi~~l~ 139 (158)
T PRK15467 75 NDPESRLPAGLLDI--GVSKR-QIAVISKTDMPDA--DVAATRKLLLET-----GFEEPIFELNSHDP-----QSVQQLV 139 (158)
T ss_pred CCcccccCHHHHhc--cCCCC-eEEEEEccccCcc--cHHHHHHHHHHc-----CCCCCEEEEECCCc-----cCHHHHH
Confidence 87654433344432 23566 8999999998642 223333333222 12368999999954 7777787
Q ss_pred HHHHHhhcc
Q 046721 231 EFISVMKFH 239 (1068)
Q Consensus 231 R~I~~~k~r 239 (1068)
..|......
T Consensus 140 ~~l~~~~~~ 148 (158)
T PRK15467 140 DYLASLTKQ 148 (158)
T ss_pred HHHHHhchh
Confidence 777655544
No 117
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.36 E-value=8.4e-12 Score=124.83 Aligned_cols=139 Identities=19% Similarity=0.236 Sum_probs=88.0
Q ss_pred EECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCCCeeEEEEeCCCC--hhH------H-HHHH--HhcCEEEE
Q 046721 81 VQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGKKRRLQFVECPND--ING------M-IDCA--KFADLALL 146 (1068)
Q Consensus 81 VVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd--l~s------m-ld~a--kvADlVLl 146 (1068)
|+|++|+|||||+|+|++.. +...+.++..... .+...+..+.|+||||. +.. + ...+ ..+|++|+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999873 2223333332221 22334578999999992 221 2 2223 48999999
Q ss_pred EEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhh
Q 046721 147 LIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDI 226 (1068)
Q Consensus 147 VIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei 226 (1068)
|+|++..- ....++..+...++| +|+|+||+|+.... .+....+.+...+ +.++|++||.++ .++
T Consensus 81 v~d~~~~~--~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~-~~~~~~~~~~~~~------~~~~~~iSa~~~-----~~~ 145 (158)
T cd01879 81 VVDATNLE--RNLYLTLQLLELGLP-VVVALNMIDEAEKR-GIKIDLDKLSELL------GVPVVPTSARKG-----EGI 145 (158)
T ss_pred EeeCCcch--hHHHHHHHHHHcCCC-EEEEEehhhhcccc-cchhhHHHHHHhh------CCCeEEEEccCC-----CCH
Confidence 99998632 223444455667888 89999999997532 1222223333332 468999999865 455
Q ss_pred cchHHHHH
Q 046721 227 GNLAEFIS 234 (1068)
Q Consensus 227 ~nLlR~I~ 234 (1068)
..+...|.
T Consensus 146 ~~l~~~l~ 153 (158)
T cd01879 146 DELKDAIA 153 (158)
T ss_pred HHHHHHHH
Confidence 55555553
No 118
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.35 E-value=7.7e-12 Score=148.27 Aligned_cols=139 Identities=25% Similarity=0.295 Sum_probs=98.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCC--h---------hHHHHHHHh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPND--I---------NGMIDCAKF 140 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd--l---------~smld~akv 140 (1068)
...|+|+|+||+|||||+|+|++.. ++..+.+|+..++ .+...+..++|+||||. . ..++..+..
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~ 294 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEE 294 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHh
Confidence 3689999999999999999999863 4455566655444 22334678999999992 1 224556889
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCc
Q 046721 141 ADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGK 220 (1068)
Q Consensus 141 ADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~ 220 (1068)
||++|+|+|++.+...+...++.. ..+.| +|+|+||+|+..... .. .....+++++||++|
T Consensus 295 aD~il~VvD~s~~~s~~~~~~l~~--~~~~p-iiiV~NK~DL~~~~~-~~-------------~~~~~~~i~iSAktg-- 355 (449)
T PRK05291 295 ADLVLLVLDASEPLTEEDDEILEE--LKDKP-VIVVLNKADLTGEID-LE-------------EENGKPVIRISAKTG-- 355 (449)
T ss_pred CCEEEEEecCCCCCChhHHHHHHh--cCCCC-cEEEEEhhhccccch-hh-------------hccCCceEEEEeeCC--
Confidence 999999999998765554444443 45677 899999999975321 11 113467899999965
Q ss_pred CCchhhcchHHHHHHh
Q 046721 221 YTKKDIGNLAEFISVM 236 (1068)
Q Consensus 221 y~~~ei~nLlR~I~~~ 236 (1068)
.++..|...|...
T Consensus 356 ---~GI~~L~~~L~~~ 368 (449)
T PRK05291 356 ---EGIDELREAIKEL 368 (449)
T ss_pred ---CCHHHHHHHHHHH
Confidence 5666777666443
No 119
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.35 E-value=1.6e-11 Score=122.17 Aligned_cols=136 Identities=26% Similarity=0.366 Sum_probs=91.7
Q ss_pred EEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCC--hh---------HHHHHHHhcC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPND--IN---------GMIDCAKFAD 142 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd--l~---------smld~akvAD 142 (1068)
.|+++|++|+|||||+++|++.. ....+.++..... .......+++++||||. .. .+...+..+|
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 82 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEAD 82 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999863 2223333333222 22234678999999992 11 2445678999
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 143 LALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 143 lVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
++++|+|++.........++.. ..+.| +++|+||+|+..... . .......+++++||.++
T Consensus 83 ~~v~v~d~~~~~~~~~~~~~~~--~~~~~-vi~v~nK~D~~~~~~-~------------~~~~~~~~~~~~Sa~~~---- 142 (157)
T cd04164 83 LVLFVIDASRGLDEEDLEILEL--PADKP-IIVVLNKSDLLPDSE-L------------LSLLAGKPIIAISAKTG---- 142 (157)
T ss_pred EEEEEEECCCCCCHHHHHHHHh--hcCCC-EEEEEEchhcCCccc-c------------ccccCCCceEEEECCCC----
Confidence 9999999997555544444443 34666 899999999986322 1 11224678999999854
Q ss_pred chhhcchHHHHH
Q 046721 223 KKDIGNLAEFIS 234 (1068)
Q Consensus 223 ~~ei~nLlR~I~ 234 (1068)
..+..+...|.
T Consensus 143 -~~v~~l~~~l~ 153 (157)
T cd04164 143 -EGLDELKEALL 153 (157)
T ss_pred -CCHHHHHHHHH
Confidence 55666665553
No 120
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.34 E-value=1.3e-11 Score=126.74 Aligned_cols=149 Identities=12% Similarity=0.140 Sum_probs=90.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEEeCCC
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--INGM-IDCAKFADLALLLIDASH 152 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVIDas~ 152 (1068)
+..|+++|++|+|||||+++|++........+..-.+..+.....++.++||||. +..+ ...+..+|++|||+|++.
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 93 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSD 93 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 4678999999999999999999874322222221112222224678999999994 4443 445688999999999986
Q ss_pred C--CchhHHHHHHHHH---hCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhc
Q 046721 153 G--FEMETFEFLNLMQ---NHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIG 227 (1068)
Q Consensus 153 g--~e~~t~eiL~~L~---~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~ 227 (1068)
. +......+..++. ..+.| +|+|+||+|+.... ....+.+.++.. .......++|.+||++| .++.
T Consensus 94 ~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~g-----~gi~ 164 (173)
T cd04154 94 RLRLDDCKRELKELLQEERLAGAT-LLILANKQDLPGAL-SEEEIREALELD--KISSHHWRIQPCSAVTG-----EGLL 164 (173)
T ss_pred HHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcccccCC-CHHHHHHHhCcc--ccCCCceEEEeccCCCC-----cCHH
Confidence 5 2222222223322 24666 89999999987521 112222222100 00113568999999965 5555
Q ss_pred chHHHH
Q 046721 228 NLAEFI 233 (1068)
Q Consensus 228 nLlR~I 233 (1068)
.+...|
T Consensus 165 ~l~~~l 170 (173)
T cd04154 165 QGIDWL 170 (173)
T ss_pred HHHHHH
Confidence 555544
No 121
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.34 E-value=1.2e-11 Score=136.97 Aligned_cols=128 Identities=19% Similarity=0.332 Sum_probs=92.3
Q ss_pred EEEEECCCCCChhHHHHHHHhcccc-CCCC-----c---------eeccEE------EEeCCCeeEEEEeCCCC--hh-H
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTK-LKVP-----E---------VRGPVT------VVSGKKRRLQFVECPND--IN-G 133 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~-~~~~-----t---------t~~~It------i~~~~k~rl~fIDtPGd--l~-s 133 (1068)
+|+|+|++|+|||||+++|+..... .... + ....++ .......+++||||||. +. .
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 4899999999999999999864210 0000 0 001111 12235678999999994 33 3
Q ss_pred HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEE
Q 046721 134 MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKL 213 (1068)
Q Consensus 134 mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~I 213 (1068)
+..++..||++|+|+|++.+...++..++..+...|+| +++|+||+|+... ....+...++..+ +.+++++
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p-~iivvNK~D~~~~--~~~~~~~~l~~~~------~~~~~~~ 151 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIP-RIIFINKMDRERA--DFDKTLAALQEAF------GRPVVPL 151 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECCccCCC--CHHHHHHHHHHHh------CCCeEEE
Confidence 78888999999999999999888888888888889999 6789999998753 3455666666665 4455655
Q ss_pred e
Q 046721 214 S 214 (1068)
Q Consensus 214 S 214 (1068)
+
T Consensus 152 ~ 152 (268)
T cd04170 152 Q 152 (268)
T ss_pred E
Confidence 4
No 122
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.34 E-value=6.6e-12 Score=120.95 Aligned_cols=100 Identities=24% Similarity=0.348 Sum_probs=75.6
Q ss_pred EEEEECCCCCChhHHHHHHHhc---cccCCCCceeccEE-EEeCCCeeEEEEeCCCCh------------hHHHHHHHhc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKH---YTKLKVPEVRGPVT-VVSGKKRRLQFVECPNDI------------NGMIDCAKFA 141 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~---~~~~~~~tt~~~It-i~~~~k~rl~fIDtPGdl------------~smld~akvA 141 (1068)
.|+|+|.+|+|||||+|+|++. .++....+|+.... .....+..+.|+||||-. ..++..+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 4899999999999999999985 24444555554432 233467888999999921 1255666899
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeC
Q 046721 142 DLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTH 179 (1068)
Q Consensus 142 DlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNK 179 (1068)
|++|||+|++.........+++.|+ .+.| +++|+||
T Consensus 81 d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPITEDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSHHHHHHHHHHHH-TTSE-EEEEEES
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHh-cCCC-EEEEEcC
Confidence 9999999988855556678888886 7777 8999998
No 123
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.33 E-value=2.1e-11 Score=123.35 Aligned_cols=146 Identities=16% Similarity=0.218 Sum_probs=88.5
Q ss_pred EEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE--E-EeCCCeeEEEEeCCC--ChhHHHH-HHHhcCEEEEEEeC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT--V-VSGKKRRLQFVECPN--DINGMID-CAKFADLALLLIDA 150 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It--i-~~~~k~rl~fIDtPG--dl~smld-~akvADlVLlVIDa 150 (1068)
.|+|+|.+|+|||||+++|++.. ......++..... + ..+....+.++|||| .+..+.. .++.+|++|+|+|+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~ 81 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSI 81 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEEC
Confidence 68999999999999999999753 2222222221111 2 223356788999999 4555543 57889999999999
Q ss_pred CCCCchhH-----HHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchh
Q 046721 151 SHGFEMET-----FEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKD 225 (1068)
Q Consensus 151 s~g~e~~t-----~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~e 225 (1068)
+..-.-+. ..+++.....+.| +|+|.||+|+.............+...+ +.++|++||+++ .+
T Consensus 82 ~~~~s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~-----~~ 149 (164)
T smart00173 82 TDRQSFEEIKKFREQILRVKDRDDVP-IVLVGNKCDLESERVVSTEEGKELARQW------GCPFLETSAKER-----VN 149 (164)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceEcHHHHHHHHHHc------CCEEEEeecCCC-----CC
Confidence 75322111 1222222224567 8899999998752211111112222221 468999999965 56
Q ss_pred hcchHHHHHH
Q 046721 226 IGNLAEFISV 235 (1068)
Q Consensus 226 i~nLlR~I~~ 235 (1068)
+..+...|..
T Consensus 150 i~~l~~~l~~ 159 (164)
T smart00173 150 VDEAFYDLVR 159 (164)
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 124
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.32 E-value=1.8e-11 Score=152.35 Aligned_cols=138 Identities=15% Similarity=0.205 Sum_probs=99.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcccc-CCCC--------------ceeccEEE------EeCCCeeEEEEeCCC--Chh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTK-LKVP--------------EVRGPVTV------VSGKKRRLQFVECPN--DIN 132 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~-~~~~--------------tt~~~Iti------~~~~k~rl~fIDtPG--dl~ 132 (1068)
.++|+|+|++|+|||||+++|+..... .... ....++|+ +...+.+++|||||| ++.
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence 479999999999999999999853110 0000 01123332 224578999999999 333
Q ss_pred -HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEE
Q 046721 133 -GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLF 211 (1068)
Q Consensus 133 -smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf 211 (1068)
.+..++..+|++|||+|++.++..++..++..+...++| +|+|+||+|+... .+..+...++..+. +....-++
T Consensus 90 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~--~~~~~~~~i~~~l~--~~~~~~~i 164 (689)
T TIGR00484 90 VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVP-RIAFVNKMDKTGA--NFLRVVNQIKQRLG--ANAVPIQL 164 (689)
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCC-EEEEEECCCCCCC--CHHHHHHHHHHHhC--CCceeEEe
Confidence 367788999999999999999999999999999999999 6789999999852 24556666666552 22334467
Q ss_pred EEecccC
Q 046721 212 KLSGLIQ 218 (1068)
Q Consensus 212 ~ISAl~g 218 (1068)
|+|+..+
T Consensus 165 pis~~~~ 171 (689)
T TIGR00484 165 PIGAEDN 171 (689)
T ss_pred ccccCCC
Confidence 7777654
No 125
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.32 E-value=2.3e-11 Score=122.57 Aligned_cols=146 Identities=17% Similarity=0.244 Sum_probs=88.8
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE--EEe-CCCeeEEEEeCCC--ChhHHHH-HHHhcCEEEEEEe
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT--VVS-GKKRRLQFVECPN--DINGMID-CAKFADLALLLID 149 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It--i~~-~~k~rl~fIDtPG--dl~smld-~akvADlVLlVID 149 (1068)
..|+|+|.+|||||||+++++... ......++...+. +.. +....+.|+|||| .+.++.. .++.+|++|||+|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 478999999999999999998753 2222223222221 222 2346788999999 4555443 4688999999999
Q ss_pred CCCCCchhH-HHHHHHHH----hCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 150 ASHGFEMET-FEFLNLMQ----NHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 150 as~g~e~~t-~eiL~~L~----~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
++..-.-+. ..++..+. ..++| +|+|+||+|+.............+...+ +.++|++||+++ .
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~-----~ 149 (163)
T cd04136 82 ITSQSSFNDLQDLREQILRVKDTENVP-MVLVGNKCDLEDERVVSREEGQALARQW------GCPFYETSAKSK-----I 149 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceecHHHHHHHHHHc------CCeEEEecCCCC-----C
Confidence 975322111 12222232 23577 8899999998642211111122222221 368999999865 5
Q ss_pred hhcchHHHHH
Q 046721 225 DIGNLAEFIS 234 (1068)
Q Consensus 225 ei~nLlR~I~ 234 (1068)
++..+...|+
T Consensus 150 ~v~~l~~~l~ 159 (163)
T cd04136 150 NVDEVFADLV 159 (163)
T ss_pred CHHHHHHHHH
Confidence 6666665554
No 126
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.32 E-value=2e-11 Score=122.86 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=90.0
Q ss_pred EEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEeCCCCC-
Q 046721 79 VVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--INGMID-CAKFADLALLLIDASHGF- 154 (1068)
Q Consensus 79 VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~smld-~akvADlVLlVIDas~g~- 154 (1068)
|+|+|.+|+|||||+++|++........+..-.+.........+.|+||||. +..+.. .++.+|++|+|+|++.+-
T Consensus 2 i~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~ 81 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRER 81 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHH
Confidence 7999999999999999999875333222222112222334678999999994 334433 458899999999998652
Q ss_pred -chhHHHHHHHHH---hCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchH
Q 046721 155 -EMETFEFLNLMQ---NHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLA 230 (1068)
Q Consensus 155 -e~~t~eiL~~L~---~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLl 230 (1068)
......+..++. ..+.| +++|+||+|+.... ....+.+.+.... ......+++.+||++| .++..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~-----~gv~~~~ 152 (158)
T cd00878 82 IEEAKEELHKLLNEEELKGVP-LLIFANKQDLPGAL-SVSELIEKLGLEK--ILGRRWHIQPCSAVTG-----DGLDEGL 152 (158)
T ss_pred HHHHHHHHHHHHhCcccCCCc-EEEEeeccCCcccc-CHHHHHHhhChhh--ccCCcEEEEEeeCCCC-----CCHHHHH
Confidence 211122222322 24677 89999999997522 2233333322111 1123568999999865 4445554
Q ss_pred HHH
Q 046721 231 EFI 233 (1068)
Q Consensus 231 R~I 233 (1068)
..|
T Consensus 153 ~~l 155 (158)
T cd00878 153 DWL 155 (158)
T ss_pred HHH
Confidence 444
No 127
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.32 E-value=3.3e-11 Score=120.63 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=87.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE--E-EeCCCeeEEEEeCCC--ChhHHH-HHHHhcCEEEEEEe
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT--V-VSGKKRRLQFVECPN--DINGMI-DCAKFADLALLLID 149 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It--i-~~~~k~rl~fIDtPG--dl~sml-d~akvADlVLlVID 149 (1068)
..|+|+|.+|||||||+++|++.. ......+...... + +.+....+.++|||| .+..+. ..++.+|++++|+|
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~ 81 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 81 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEE
Confidence 368999999999999999999763 2222222211111 1 122345678899999 355543 35688999999999
Q ss_pred CCCCCchhH--H---HHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 150 ASHGFEMET--F---EFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 150 as~g~e~~t--~---eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
.+..-.-+. . .++......++| +++|+||+|+.............. ..+ +.++|++||++| .
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~~~-~~~------~~~~~~~Sa~~~-----~ 148 (162)
T cd04138 82 INSRKSFEDIHTYREQIKRVKDSDDVP-MVLVGNKCDLAARTVSSRQGQDLA-KSY------GIPYIETSAKTR-----Q 148 (162)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccceecHHHHHHHH-HHh------CCeEEEecCCCC-----C
Confidence 875322111 1 222222224677 899999999875221112222221 111 457999999865 5
Q ss_pred hhcchHHHHH
Q 046721 225 DIGNLAEFIS 234 (1068)
Q Consensus 225 ei~nLlR~I~ 234 (1068)
++..+...|.
T Consensus 149 gi~~l~~~l~ 158 (162)
T cd04138 149 GVEEAFYTLV 158 (162)
T ss_pred CHHHHHHHHH
Confidence 5666665553
No 128
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.32 E-value=2.9e-11 Score=124.36 Aligned_cols=150 Identities=11% Similarity=0.084 Sum_probs=91.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEEEeCCC
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--INGMI-DCAKFADLALLLIDASH 152 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~sml-d~akvADlVLlVIDas~ 152 (1068)
...|+++|++|+|||||+++|.........+|+...+.........+.++||||. +..+. ..+..||++|||+|++.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~ 88 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSAD 88 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCc
Confidence 3679999999999999999997642222222222222223345678999999995 44443 34689999999999986
Q ss_pred C--CchhHHHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhc
Q 046721 153 G--FEMETFEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIG 227 (1068)
Q Consensus 153 g--~e~~t~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~ 227 (1068)
. ++.....+...+.. .+.| +++|.||+|+... ....++.+.+. +.........+|++||++| .++.
T Consensus 89 ~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~~~~i~~~~~--~~~~~~~~~~~~~~SAk~g-----~gv~ 159 (168)
T cd04149 89 RDRIDEARQELHRIINDREMRDAL-LLVFANKQDLPDA-MKPHEIQEKLG--LTRIRDRNWYVQPSCATSG-----DGLY 159 (168)
T ss_pred hhhHHHHHHHHHHHhcCHhhcCCc-EEEEEECcCCccC-CCHHHHHHHcC--CCccCCCcEEEEEeeCCCC-----CChH
Confidence 4 32222234344432 4567 8999999998641 11122222211 0000112346899999976 4566
Q ss_pred chHHHHH
Q 046721 228 NLAEFIS 234 (1068)
Q Consensus 228 nLlR~I~ 234 (1068)
++...|+
T Consensus 160 ~~~~~l~ 166 (168)
T cd04149 160 EGLTWLS 166 (168)
T ss_pred HHHHHHh
Confidence 6665553
No 129
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.31 E-value=2e-11 Score=122.99 Aligned_cols=146 Identities=16% Similarity=0.148 Sum_probs=89.3
Q ss_pred EEEECCCCCChhHHHHHHHhccccCCCCceeccEE-EEeCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEEEeCCCCC
Q 046721 79 VVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVT-VVSGKKRRLQFVECPND--INGMI-DCAKFADLALLLIDASHGF 154 (1068)
Q Consensus 79 VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd--l~sml-d~akvADlVLlVIDas~g~ 154 (1068)
|+|+|++|+|||||+++|++........+..-.+. +.......+.++||||. +..+. ..+..||++|||+|++.+.
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~ 81 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEA 81 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHH
Confidence 78999999999999999998743222222211122 22234578999999994 44433 4578899999999998653
Q ss_pred --chhHHHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHH-HhcccccCCCeEEEEecccCCcCCchhhcc
Q 046721 155 --EMETFEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKH-RFGTELYHGAKLFKLSGLIQGKYTKKDIGN 228 (1068)
Q Consensus 155 --e~~t~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~-~~~~e~~~~~kVf~ISAl~g~~y~~~ei~n 228 (1068)
......+..++.. .++| +++|+||+|+.... ....+...+.. .+ ......+++++||++| .++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~~~~i~~~~~~~~~--~~~~~~~~~~~Sa~~~-----~gv~~ 152 (160)
T cd04156 82 RLDESQKELKHILKNEHIKGVP-VVLLANKQDLPGAL-TAEEITRRFKLKKY--CSDRDWYVQPCSAVTG-----EGLAE 152 (160)
T ss_pred HHHHHHHHHHHHHhchhhcCCC-EEEEEECcccccCc-CHHHHHHHcCCccc--CCCCcEEEEecccccC-----CChHH
Confidence 2222233334332 4677 89999999986311 11222222110 00 0012346899999965 56666
Q ss_pred hHHHH
Q 046721 229 LAEFI 233 (1068)
Q Consensus 229 LlR~I 233 (1068)
+...|
T Consensus 153 ~~~~i 157 (160)
T cd04156 153 AFRKL 157 (160)
T ss_pred HHHHH
Confidence 66555
No 130
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.31 E-value=6.5e-11 Score=118.43 Aligned_cols=146 Identities=23% Similarity=0.363 Sum_probs=94.6
Q ss_pred EEEECCCCCChhHHHHHHHhc-c---ccCCCCceeccEEEEeCCCeeEEEEeCCCC------------hhHH----HHHH
Q 046721 79 VVVQGPPQVGKSLLIKCLIKH-Y---TKLKVPEVRGPVTVVSGKKRRLQFVECPND------------INGM----IDCA 138 (1068)
Q Consensus 79 VaVVG~pnvGKSTLIn~L~~~-~---~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd------------l~sm----ld~a 138 (1068)
|+++|.+|+|||||+|+|++. . .+..+..+.. +..... ...++|+||||- +..+ +...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~-~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQL-INFFNV-NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCccee-EEEEEc-cCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 799999999999999999943 2 1222222221 111221 238999999982 1122 2223
Q ss_pred HhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 139 KFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 139 kvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
..++++++|+|+..........++..+...+.| +++|+||+|+... .........+...+.. .....+++++||+++
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~-vi~v~nK~D~~~~-~~~~~~~~~~~~~l~~-~~~~~~~~~~Sa~~~ 156 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIP-FLVVLTKADKLKK-SELAKALKEIKKELKL-FEIDPPIILFSSLKG 156 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCC-EEEEEEchhcCCh-HHHHHHHHHHHHHHHh-ccCCCceEEEecCCC
Confidence 456899999999877766667788888888888 8999999999753 2333333333333321 345678999999865
Q ss_pred CcCCchhhcchHHHHH
Q 046721 219 GKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 219 ~~y~~~ei~nLlR~I~ 234 (1068)
..+..+...|.
T Consensus 157 -----~~~~~l~~~l~ 167 (170)
T cd01876 157 -----QGIDELRALIE 167 (170)
T ss_pred -----CCHHHHHHHHH
Confidence 44555555553
No 131
>PRK12740 elongation factor G; Reviewed
Probab=99.30 E-value=1.2e-10 Score=144.84 Aligned_cols=114 Identities=15% Similarity=0.239 Sum_probs=81.8
Q ss_pred ECCCCCChhHHHHHHHhcccc--C--------CCC-----ceeccEEE------EeCCCeeEEEEeCCCC--hh-HHHHH
Q 046721 82 QGPPQVGKSLLIKCLIKHYTK--L--------KVP-----EVRGPVTV------VSGKKRRLQFVECPND--IN-GMIDC 137 (1068)
Q Consensus 82 VG~pnvGKSTLIn~L~~~~~~--~--------~~~-----tt~~~Iti------~~~~k~rl~fIDtPGd--l~-smld~ 137 (1068)
||++|+|||||+++|+..... . ... +....+|+ +...+..++||||||. +. .+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999654210 0 000 01122332 2245789999999995 33 37778
Q ss_pred HHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHH
Q 046721 138 AKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKH 198 (1068)
Q Consensus 138 akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~ 198 (1068)
+..||++|+|+|++.+...++..++..+...|+| +|+|+||+|+... .+..+.+.++.
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~--~~~~~~~~l~~ 138 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVP-RIIFVNKMDRAGA--DFFRVLAQLQE 138 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEECCCCCCC--CHHHHHHHHHH
Confidence 8999999999999999888888888888889999 7889999998742 23334444444
No 132
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.30 E-value=3e-11 Score=126.15 Aligned_cols=149 Identities=13% Similarity=0.086 Sum_probs=92.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCCCCceeccE-EEEeCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEEeCC
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPV-TVVSGKKRRLQFVECPND--INGM-IDCAKFADLALLLIDAS 151 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~I-ti~~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVIDas 151 (1068)
...|+++|++|||||||+++|++...... ..+.++. ......+.++.++||||. +..+ ...+..||++|||+|++
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~ 95 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQH-QPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAY 95 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCccc-CCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECC
Confidence 46799999999999999999998632221 2222222 222334678999999994 3333 34568999999999998
Q ss_pred CCC--chhHHHHHHHHH---hCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcc-------cccCCCeEEEEecccCC
Q 046721 152 HGF--EMETFEFLNLMQ---NHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGT-------ELYHGAKLFKLSGLIQG 219 (1068)
Q Consensus 152 ~g~--e~~t~eiL~~L~---~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~-------e~~~~~kVf~ISAl~g~ 219 (1068)
..- .....++..++. ..+.| +++|+||+|+... -...++.+.|. +.. .......+|++||+++
T Consensus 96 ~~~~~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~-~~~~~i~~~l~--l~~~~~~~~~~~~~~~~i~~~Sa~~~- 170 (184)
T smart00178 96 DKERFAESKRELDALLSDEELATVP-FLILGNKIDAPYA-ASEDELRYALG--LTNTTGSKGKVGVRPLEVFMCSVVRR- 170 (184)
T ss_pred cHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC-CCHHHHHHHcC--CCcccccccccCCceeEEEEeecccC-
Confidence 642 111113333332 25777 8999999998631 11122222221 000 0113556999999855
Q ss_pred cCCchhhcchHHHHH
Q 046721 220 KYTKKDIGNLAEFIS 234 (1068)
Q Consensus 220 ~y~~~ei~nLlR~I~ 234 (1068)
.++..+++.|.
T Consensus 171 ----~g~~~~~~wl~ 181 (184)
T smart00178 171 ----MGYGEGFKWLS 181 (184)
T ss_pred ----CChHHHHHHHH
Confidence 67777777774
No 133
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.30 E-value=4.3e-11 Score=120.50 Aligned_cols=145 Identities=13% Similarity=0.158 Sum_probs=87.9
Q ss_pred EEEEECCCCCChhHHHHHHHhccccC--CCCceeccEE--EE-eCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEEe
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKL--KVPEVRGPVT--VV-SGKKRRLQFVECPND--INGM-IDCAKFADLALLLID 149 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~--~~~tt~~~It--i~-~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVID 149 (1068)
.|+++|++|+|||||+++|++..... .+..+...+. +. .+...++.++||||. +..+ ...++.+|++|+|+|
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 81 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 81 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999874322 1211111111 11 123457899999993 3343 445789999999999
Q ss_pred CCCCCchhH-HHHHHH-HHhCC--CCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchh
Q 046721 150 ASHGFEMET-FEFLNL-MQNHG--LPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKD 225 (1068)
Q Consensus 150 as~g~e~~t-~eiL~~-L~~~G--lP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~e 225 (1068)
++.+-.-.. ...+.. ....+ .| +++|+||+|+.............+... .+..++.+||+++ .+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~-----~~ 149 (161)
T cd01861 82 ITNRQSFDNTDKWIDDVRDERGNDVI-IVLVGNKTDLSDKRQVSTEEGEKKAKE------LNAMFIETSAKAG-----HN 149 (161)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEEChhccccCccCHHHHHHHHHH------hCCEEEEEeCCCC-----CC
Confidence 986432111 233333 33333 66 899999999954221111111222111 2478999999865 55
Q ss_pred hcchHHHHH
Q 046721 226 IGNLAEFIS 234 (1068)
Q Consensus 226 i~nLlR~I~ 234 (1068)
+..+...|+
T Consensus 150 v~~l~~~i~ 158 (161)
T cd01861 150 VKELFRKIA 158 (161)
T ss_pred HHHHHHHHH
Confidence 666665554
No 134
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.30 E-value=2.9e-11 Score=124.74 Aligned_cols=150 Identities=13% Similarity=0.134 Sum_probs=91.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEEeCCC
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--INGM-IDCAKFADLALLLIDASH 152 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVIDas~ 152 (1068)
...|+++|++|+|||||+++|+.........+....+.........+.|+||||. +..+ ...++.||++|||+|++.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~ 94 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTD 94 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCC
Confidence 4679999999999999999997642212222221122223334678999999994 4444 345789999999999986
Q ss_pred CC--chhHHHHHHHHHhC---CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhc
Q 046721 153 GF--EMETFEFLNLMQNH---GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIG 227 (1068)
Q Consensus 153 g~--e~~t~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~ 227 (1068)
.. .....++..++... ++| +++|+||+|+.... ....+.+.+...... ....++|++||++| .++.
T Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~~~~-~~~~i~~~l~~~~~~--~~~~~~~~~SA~~g-----~gi~ 165 (174)
T cd04153 95 RERLPLTKEELYKMLAHEDLRKAV-LLVLANKQDLKGAM-TPAEISESLGLTSIR--DHTWHIQGCCALTG-----EGLP 165 (174)
T ss_pred HHHHHHHHHHHHHHHhchhhcCCC-EEEEEECCCCCCCC-CHHHHHHHhCccccc--CCceEEEecccCCC-----CCHH
Confidence 52 22222344444432 466 89999999986421 112222222100000 11346899999965 5566
Q ss_pred chHHHHH
Q 046721 228 NLAEFIS 234 (1068)
Q Consensus 228 nLlR~I~ 234 (1068)
.+...|+
T Consensus 166 e~~~~l~ 172 (174)
T cd04153 166 EGLDWIA 172 (174)
T ss_pred HHHHHHh
Confidence 6666553
No 135
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.29 E-value=3.2e-11 Score=122.80 Aligned_cols=142 Identities=24% Similarity=0.285 Sum_probs=88.3
Q ss_pred EECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCC-CeeEEEEeCCCCh---------h-HHHHHHHhcCEEEE
Q 046721 81 VQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGK-KRRLQFVECPNDI---------N-GMIDCAKFADLALL 146 (1068)
Q Consensus 81 VVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~-k~rl~fIDtPGdl---------~-smld~akvADlVLl 146 (1068)
|+|++|||||||+|+|++.. +.....+|..+.. ..... ...+.|+||||.. . .++..++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 58999999999999999974 2333334443332 23334 6789999999931 1 34566788999999
Q ss_pred EEeCCCCC-----ch-hHH-HHHHHHHh----------CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCe
Q 046721 147 LIDASHGF-----EM-ETF-EFLNLMQN----------HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAK 209 (1068)
Q Consensus 147 VIDas~g~-----e~-~t~-eiL~~L~~----------~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~k 209 (1068)
|+|++... .. ... .++..+.. .+.| +++|+||+|+..... ..... .... ......+
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~-~~~~~--~~~~---~~~~~~~ 153 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP-VIYVLNKIDLDDAEE-LEEEL--VREL---ALEEGAE 153 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC-eEEEEEchhcCchhH-HHHHH--HHHH---hcCCCCC
Confidence 99998753 11 111 12222211 3567 889999999975322 22221 1111 1224667
Q ss_pred EEEEecccCCcCCchhhcchHHHHH
Q 046721 210 LFKLSGLIQGKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 210 Vf~ISAl~g~~y~~~ei~nLlR~I~ 234 (1068)
++++||+++ .++..+...|+
T Consensus 154 ~~~~Sa~~~-----~gl~~l~~~l~ 173 (176)
T cd01881 154 VVPISAKTE-----EGLDELIRAIY 173 (176)
T ss_pred EEEEehhhh-----cCHHHHHHHHH
Confidence 999999854 55666665553
No 136
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.29 E-value=6.5e-11 Score=120.40 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=89.1
Q ss_pred EEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE---E-EeCCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEe
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT---V-VSGKKRRLQFVECPND--INGMID-CAKFADLALLLID 149 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It---i-~~~~k~rl~fIDtPGd--l~smld-~akvADlVLlVID 149 (1068)
.|+|||.+|||||||+++|+... ......+....+. + ..+....+.|+||||. +..+.. .++.+|++|||+|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 81 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFD 81 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEE
Confidence 58999999999999999998753 2111122111111 1 1233567889999994 445444 5789999999999
Q ss_pred CCCCCchhH-HHHHHHHHhC--CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhh
Q 046721 150 ASHGFEMET-FEFLNLMQNH--GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDI 226 (1068)
Q Consensus 150 as~g~e~~t-~eiL~~L~~~--GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei 226 (1068)
++.+..-.. ...+..+... ++| +|+|+||+|+... ......+ +... .+.++|++||++| .++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~--~~~~~~~-~~~~------~~~~~~~~Sa~~~-----~gv 146 (161)
T cd04124 82 VTRKITYKNLSKWYEELREYRPEIP-CIVVANKIDLDPS--VTQKKFN-FAEK------HNLPLYYVSAADG-----TNV 146 (161)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEECccCchh--HHHHHHH-HHHH------cCCeEEEEeCCCC-----CCH
Confidence 986544322 2345555443 677 8999999998531 1111111 1111 1468999999965 555
Q ss_pred cchHHHHHH
Q 046721 227 GNLAEFISV 235 (1068)
Q Consensus 227 ~nLlR~I~~ 235 (1068)
..+...+..
T Consensus 147 ~~l~~~l~~ 155 (161)
T cd04124 147 VKLFQDAIK 155 (161)
T ss_pred HHHHHHHHH
Confidence 566655543
No 137
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.29 E-value=3.4e-11 Score=122.09 Aligned_cols=147 Identities=16% Similarity=0.238 Sum_probs=88.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhc-cccCCCCceeccEE--EEe-CCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEe
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPVT--VVS-GKKRRLQFVECPND--INGMID-CAKFADLALLLID 149 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~It--i~~-~~k~rl~fIDtPGd--l~smld-~akvADlVLlVID 149 (1068)
..|+|+|.+|||||||+++++.. +......++...+. +.. +....+.|+||||. +.++.. .++.+|++|||+|
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYS 81 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEE
Confidence 47899999999999999999864 22222233322222 222 23557789999993 555544 4688999999999
Q ss_pred CCCCCchhH-HHHHHHH----HhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 150 ASHGFEMET-FEFLNLM----QNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 150 as~g~e~~t-~eiL~~L----~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
.+..-.-+. ...+..+ ...++| +|+|.||+|+......-....+.+.+.+ ..+++.+||+++ .
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~-----~ 149 (164)
T cd04175 82 ITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVVGKEQGQNLARQW------GCAFLETSAKAK-----I 149 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcchhccEEcHHHHHHHHHHh------CCEEEEeeCCCC-----C
Confidence 874322111 1222222 224577 8999999999642110011112222222 357999999865 5
Q ss_pred hhcchHHHHHH
Q 046721 225 DIGNLAEFISV 235 (1068)
Q Consensus 225 ei~nLlR~I~~ 235 (1068)
.+.++...|+.
T Consensus 150 ~v~~~~~~l~~ 160 (164)
T cd04175 150 NVNEIFYDLVR 160 (164)
T ss_pred CHHHHHHHHHH
Confidence 66666665543
No 138
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.29 E-value=3e-11 Score=150.97 Aligned_cols=144 Identities=19% Similarity=0.216 Sum_probs=97.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCCCeeEEEEeCCCC--hhH-----HH------HHH--
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGKKRRLQFVECPND--ING-----MI------DCA-- 138 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd--l~s-----ml------d~a-- 138 (1068)
..|+++|+||||||||+|+|++.. ++..+.+|....+ .....+.++.++||||. +.. .+ +..
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~ 83 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS 83 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhc
Confidence 579999999999999999999873 2233333332222 23445778999999993 321 11 111
Q ss_pred HhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 139 KFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 139 kvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
..+|+||+|+|++..- ....++..+...|+| +|+|+||+|+.+. .......+.+.+.+ +.+++++||.++
T Consensus 84 ~~aD~vI~VvDat~le--r~l~l~~ql~e~giP-vIvVlNK~Dl~~~-~~i~id~~~L~~~L------G~pVvpiSA~~g 153 (772)
T PRK09554 84 GDADLLINVVDASNLE--RNLYLTLQLLELGIP-CIVALNMLDIAEK-QNIRIDIDALSARL------GCPVIPLVSTRG 153 (772)
T ss_pred cCCCEEEEEecCCcch--hhHHHHHHHHHcCCC-EEEEEEchhhhhc-cCcHHHHHHHHHHh------CCCEEEEEeecC
Confidence 3789999999998632 233455667778999 8999999998742 22333445555554 678999999865
Q ss_pred CcCCchhhcchHHHHHH
Q 046721 219 GKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 219 ~~y~~~ei~nLlR~I~~ 235 (1068)
.++..+...+..
T Consensus 154 -----~GIdeL~~~I~~ 165 (772)
T PRK09554 154 -----RGIEALKLAIDR 165 (772)
T ss_pred -----CCHHHHHHHHHH
Confidence 556666666644
No 139
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.29 E-value=9.4e-11 Score=115.04 Aligned_cols=144 Identities=22% Similarity=0.285 Sum_probs=95.3
Q ss_pred EECCCCCChhHHHHHHHhcccc---CCCCceeccEEE--EeCCCeeEEEEeCCCC--h--------hHHHHHHHhcCEEE
Q 046721 81 VQGPPQVGKSLLIKCLIKHYTK---LKVPEVRGPVTV--VSGKKRRLQFVECPND--I--------NGMIDCAKFADLAL 145 (1068)
Q Consensus 81 VVG~pnvGKSTLIn~L~~~~~~---~~~~tt~~~Iti--~~~~k~rl~fIDtPGd--l--------~smld~akvADlVL 145 (1068)
|+|++|+|||||+|+|++.... ....++...... .......+.|+||||- . ..+...+..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999986322 222222222221 1122678999999992 1 23455779999999
Q ss_pred EEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchh
Q 046721 146 LLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKD 225 (1068)
Q Consensus 146 lVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~e 225 (1068)
+|+|++.........++..+...+.| +++|+||+|+.... ......+ ............++|++||.++ .+
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~sa~~~-----~~ 151 (163)
T cd00880 81 FVVDADLRADEEEEKLLELLRERGKP-VLLVLNKIDLLPEE-EEEELLE--LRLLILLLLLGLPVIAVSALTG-----EG 151 (163)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCe-EEEEEEccccCChh-hHHHHHH--HHHhhcccccCCceEEEeeecc-----CC
Confidence 99999987766655555666667888 78999999998643 2222221 0111223456889999999854 45
Q ss_pred hcchHHHH
Q 046721 226 IGNLAEFI 233 (1068)
Q Consensus 226 i~nLlR~I 233 (1068)
+..+...|
T Consensus 152 v~~l~~~l 159 (163)
T cd00880 152 IDELREAL 159 (163)
T ss_pred HHHHHHHH
Confidence 55555554
No 140
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.29 E-value=3.4e-11 Score=123.51 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=91.6
Q ss_pred EEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEEeCCCCC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--INGM-IDCAKFADLALLLIDASHGF 154 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVIDas~g~ 154 (1068)
.|+++|+++||||||+++|++........|.......+...+.+++++||||. +..+ ...+..||++|||+|++..-
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 37999999999999999999874333222221111122335788999999994 4444 45678999999999998643
Q ss_pred chh-HHHHHHHHHh----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHH-HHhcccccCCCeEEEEecccCCc-CCchhhc
Q 046721 155 EME-TFEFLNLMQN----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLK-HRFGTELYHGAKLFKLSGLIQGK-YTKKDIG 227 (1068)
Q Consensus 155 e~~-t~eiL~~L~~----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk-~~~~~e~~~~~kVf~ISAl~g~~-y~~~ei~ 227 (1068)
... ....+..+.. .+.| +++|+||+|+.... ....+.+.+. ..+.........++++||++|+. ....++.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~-~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~ 158 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKP-ILVLANKQDKKNAL-LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIV 158 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCc-EEEEEeCCCCcCCC-CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHH
Confidence 221 1223333322 3667 89999999986522 1222222221 11111111235788899987611 1124555
Q ss_pred chHHHHH
Q 046721 228 NLAEFIS 234 (1068)
Q Consensus 228 nLlR~I~ 234 (1068)
..+++|+
T Consensus 159 ~~~~wl~ 165 (167)
T cd04161 159 EGLRWLL 165 (167)
T ss_pred HHHHHHh
Confidence 5555553
No 141
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.28 E-value=5.5e-11 Score=119.72 Aligned_cols=146 Identities=18% Similarity=0.239 Sum_probs=90.2
Q ss_pred EEEEECCCCCChhHHHHHHHhccccCCCCceec----cEEEEe-CCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEEe
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRG----PVTVVS-GKKRRLQFVECPND--INGM-IDCAKFADLALLLID 149 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~----~Iti~~-~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVID 149 (1068)
.|+|+|++|+|||||+++|++.........+.+ ...+.. +...++.++||||. +..+ ...++.||++|||+|
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d 81 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYD 81 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEE
Confidence 689999999999999999998643222211111 111222 23468899999994 3443 345688999999999
Q ss_pred CCCCCchhHH-HHHHHHHh---CCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 150 ASHGFEMETF-EFLNLMQN---HGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 150 as~g~e~~t~-eiL~~L~~---~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
++.+...+.. .++..+.. .++| +++|+||+|+..... ......+ +... .+..++.+||.++ .
T Consensus 82 ~~~~~s~~~~~~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~~~~~~~~~~-~~~~------~~~~~~e~Sa~~~-----~ 148 (164)
T smart00175 82 ITNRESFENLKNWLKELREYADPNVV-IMLVGNKSDLEDQRQVSREEAEA-FAEE------HGLPFFETSAKTN-----T 148 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcccccCCCHHHHHH-HHHH------cCCeEEEEeCCCC-----C
Confidence 9864433222 23444333 3567 899999999875221 1122222 2111 1456999999854 4
Q ss_pred hhcchHHHHHHh
Q 046721 225 DIGNLAEFISVM 236 (1068)
Q Consensus 225 ei~nLlR~I~~~ 236 (1068)
++..+...|...
T Consensus 149 ~i~~l~~~i~~~ 160 (164)
T smart00175 149 NVEEAFEELARE 160 (164)
T ss_pred CHHHHHHHHHHH
Confidence 666666666543
No 142
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.28 E-value=4.9e-11 Score=119.88 Aligned_cols=145 Identities=14% Similarity=0.162 Sum_probs=88.9
Q ss_pred EEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE---EEeCCCeeEEEEeCCC--ChhHH-HHHHHhcCEEEEEEeC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT---VVSGKKRRLQFVECPN--DINGM-IDCAKFADLALLLIDA 150 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It---i~~~~k~rl~fIDtPG--dl~sm-ld~akvADlVLlVIDa 150 (1068)
.|+++|.+|+|||||+++|+... ......++...+. ...+....+.++|||| .+..+ ...++.+|.+++|+|.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 81 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSI 81 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999998753 2222222222222 1223456899999999 34443 3456889999999998
Q ss_pred CCCCc--hhHHHHHHHHH---hCCCCcEEEEEeCCCcCCcH-HHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 151 SHGFE--METFEFLNLMQ---NHGLPNVMGVLTHLDKFTDK-KKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 151 s~g~e--~~t~eiL~~L~---~~GlP~vIvVLNKiDlvk~~-k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
+.+-. .....+...+. ..++| +++|+||+|+.... ........ +...+ +.++|.+||+++ .
T Consensus 82 ~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~~~~~~~~~~-~~~~~------~~~~~~~Sa~~~-----~ 148 (164)
T cd04139 82 TDMESFTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQVSSEEAAN-LARQW------GVPYVETSAKTR-----Q 148 (164)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEccccccccccCHHHHHH-HHHHh------CCeEEEeeCCCC-----C
Confidence 75321 11112222222 25778 89999999997521 11122222 11111 468999999865 6
Q ss_pred hhcchHHHHHH
Q 046721 225 DIGNLAEFISV 235 (1068)
Q Consensus 225 ei~nLlR~I~~ 235 (1068)
++.++...|..
T Consensus 149 gi~~l~~~l~~ 159 (164)
T cd04139 149 NVEKAFYDLVR 159 (164)
T ss_pred CHHHHHHHHHH
Confidence 66667666643
No 143
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.28 E-value=5.3e-11 Score=117.98 Aligned_cols=146 Identities=12% Similarity=0.193 Sum_probs=88.1
Q ss_pred EEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEEeCCCCC
Q 046721 79 VVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVTVVSGKKRRLQFVECPND--ING-MIDCAKFADLALLLIDASHGF 154 (1068)
Q Consensus 79 VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVIDas~g~ 154 (1068)
|+|+|++|||||||+|+|++.. ......+....+..+......+.++||||. +.. ....++.+|++|+|+|++...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 7999999999999999999873 222222222122222233578999999994 444 345678999999999997532
Q ss_pred chh--HHHHHHHHH---hCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcch
Q 046721 155 EME--TFEFLNLMQ---NHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNL 229 (1068)
Q Consensus 155 e~~--t~eiL~~L~---~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nL 229 (1068)
... ...+..++. ..++| +++|+||+|+.... ....+...+. +........+++++||+++ .++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~-----~gi~~l 152 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGAL-SVDELIEQMN--LKSITDREVSCYSISCKEK-----TNIDIV 152 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCc-CHHHHHHHhC--cccccCCceEEEEEEeccC-----CChHHH
Confidence 211 112222322 24677 89999999987532 2222222221 1111123457899999865 455555
Q ss_pred HHHH
Q 046721 230 AEFI 233 (1068)
Q Consensus 230 lR~I 233 (1068)
...|
T Consensus 153 ~~~l 156 (159)
T cd04159 153 LDWL 156 (159)
T ss_pred HHHH
Confidence 5544
No 144
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.28 E-value=5.4e-11 Score=124.01 Aligned_cols=152 Identities=16% Similarity=0.201 Sum_probs=92.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCCCCcee---ccEEEE--eCCCeeEEEEeCCCC--hhHHHHH-HHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVR---GPVTVV--SGKKRRLQFVECPND--INGMIDC-AKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~---~~Iti~--~~~k~rl~fIDtPGd--l~smld~-akvADlVLlV 147 (1068)
+..|+++|.+|||||||+++|+.........+.. ..+++. .+....+.|+||||. +..+... ++.||++|||
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 82 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV 82 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence 5679999999999999999998753212222211 112222 124578999999994 5555554 5789999999
Q ss_pred EeCCCCCchhH-----HHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccccc--CCCeEEEEecccCCc
Q 046721 148 IDASHGFEMET-----FEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELY--HGAKLFKLSGLIQGK 220 (1068)
Q Consensus 148 IDas~g~e~~t-----~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~--~~~kVf~ISAl~g~~ 220 (1068)
+|++..-.... .+++......++| +++|+||+|+.... ......+.+. + .... ...+++++||+++
T Consensus 83 ~D~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~~-~~~~~~~~~~--~-~~~~~~~~~~~~~~SA~~~-- 155 (183)
T cd04152 83 VDSVDVERMEEAKTELHKITRFSENQGVP-VLVLANKQDLPNAL-SVSEVEKLLA--L-HELSASTPWHVQPACAIIG-- 155 (183)
T ss_pred EECCCHHHHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCccccC-CHHHHHHHhC--c-cccCCCCceEEEEeecccC--
Confidence 99986422111 1233333445788 89999999986421 1111111111 0 1111 2356899999965
Q ss_pred CCchhhcchHHHHHHhh
Q 046721 221 YTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 221 y~~~ei~nLlR~I~~~k 237 (1068)
.++..+...|....
T Consensus 156 ---~gi~~l~~~l~~~l 169 (183)
T cd04152 156 ---EGLQEGLEKLYEMI 169 (183)
T ss_pred ---CCHHHHHHHHHHHH
Confidence 56666666555443
No 145
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.28 E-value=3.5e-11 Score=123.47 Aligned_cols=148 Identities=13% Similarity=0.106 Sum_probs=90.9
Q ss_pred EEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEEEeCCCC--
Q 046721 79 VVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--INGMI-DCAKFADLALLLIDASHG-- 153 (1068)
Q Consensus 79 VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~sml-d~akvADlVLlVIDas~g-- 153 (1068)
|+++|.+++|||||+++|++........|..-.+......+.++.++||||. +..+. ..+..||++|||+|++..
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s 81 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDR 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHH
Confidence 7899999999999999999863322222222122223345778999999994 33433 456899999999999864
Q ss_pred CchhHHHHHHHHHhC---CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccccc--CCCeEEEEecccCCcCCchhhcc
Q 046721 154 FEMETFEFLNLMQNH---GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELY--HGAKLFKLSGLIQGKYTKKDIGN 228 (1068)
Q Consensus 154 ~e~~t~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~--~~~kVf~ISAl~g~~y~~~ei~n 228 (1068)
++.....+..++... +.| +|+|.||+|+... .....+.+.+ ... .+. ....++++||++| .++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~~~~~~~~~-~~~--~~~~~~~~~~~~~Sa~~g-----~gv~~ 151 (169)
T cd04158 82 VSEAHSELAKLLTEKELRDAL-LLIFANKQDVAGA-LSVEEMTELL-SLH--KLCCGRSWYIQGCDARSG-----MGLYE 151 (169)
T ss_pred HHHHHHHHHHHhcChhhCCCC-EEEEEeCcCcccC-CCHHHHHHHh-CCc--cccCCCcEEEEeCcCCCC-----CCHHH
Confidence 333223344444322 355 8999999998632 1122222221 100 111 1236778999965 56777
Q ss_pred hHHHHHHh
Q 046721 229 LAEFISVM 236 (1068)
Q Consensus 229 LlR~I~~~ 236 (1068)
+...|+..
T Consensus 152 ~f~~l~~~ 159 (169)
T cd04158 152 GLDWLSRQ 159 (169)
T ss_pred HHHHHHHH
Confidence 77666543
No 146
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.27 E-value=7.5e-11 Score=116.66 Aligned_cols=143 Identities=18% Similarity=0.253 Sum_probs=88.6
Q ss_pred EEEEECCCCCChhHHHHHHHhccccCCC-Ccee---ccEEEEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEEe
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKLKV-PEVR---GPVTVVS-GKKRRLQFVECPND--ING-MIDCAKFADLALLLID 149 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~~~-~tt~---~~Iti~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVID 149 (1068)
.|+++|++++|||||+++|++....... .+.. ....+.. .....+.++||||. +.. ....++.+|++|+|+|
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d 81 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYD 81 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEE
Confidence 5899999999999999999987543321 2211 1111221 23568899999994 333 4456688999999999
Q ss_pred CCCCCchhH-HHHHHHHHhC---CCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 150 ASHGFEMET-FEFLNLMQNH---GLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 150 as~g~e~~t-~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
++..-.-.. ..++..+... +.| +++|+||+|+..+.. ......+.... ...+++.+||.++ .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~~-----~ 148 (159)
T cd00154 82 ITNRESFENLDKWLKELKEYAPENIP-IILVGNKIDLEDQRQVSTEEAQQFAKE-------NGLLFFETSAKTG-----E 148 (159)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccccccccccHHHHHHHHHH-------cCCeEEEEecCCC-----C
Confidence 986321111 2345555444 366 899999999962221 12222222111 2577999999854 4
Q ss_pred hhcchHHHH
Q 046721 225 DIGNLAEFI 233 (1068)
Q Consensus 225 ei~nLlR~I 233 (1068)
++..+...|
T Consensus 149 ~i~~~~~~i 157 (159)
T cd00154 149 NVEELFQSL 157 (159)
T ss_pred CHHHHHHHH
Confidence 555555444
No 147
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.27 E-value=8.5e-11 Score=119.46 Aligned_cols=136 Identities=11% Similarity=0.141 Sum_probs=83.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCCCceec---cEE-EEeCC-CeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRG---PVT-VVSGK-KRRLQFVECPND--ING-MIDCAKFADLALLLI 148 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~---~It-i~~~~-k~rl~fIDtPGd--l~s-mld~akvADlVLlVI 148 (1068)
+.|+|+|.+|+|||||+++|+.........++.+ .+. +.... ...++|+||||. +.. ....++.+|++|+|+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~ 83 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAY 83 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEE
Confidence 6799999999999999999987532222222211 111 22222 358899999994 444 344568899999999
Q ss_pred eCCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 149 DASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 149 Das~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
|++....-+. ...+..+.. .++| +|+|+||+|+.............+... .....++.+||++|
T Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~ 151 (165)
T cd01864 84 DITRRSSFESVPHWIEEVEKYGASNVV-LLLIGNKCDLEEQREVLFEEACTLAEK-----NGMLAVLETSAKES 151 (165)
T ss_pred ECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECcccccccccCHHHHHHHHHH-----cCCcEEEEEECCCC
Confidence 9986533222 234444433 3566 899999999975321111111122222 12346899999965
No 148
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.27 E-value=1.6e-10 Score=146.69 Aligned_cols=208 Identities=18% Similarity=0.252 Sum_probs=137.6
Q ss_pred ChhHHHHHHHhccccCCCCceeccEEEE-------eC--C---------------CeeEEEEeCCC--ChhH-HHHHHHh
Q 046721 88 GKSLLIKCLIKHYTKLKVPEVRGPVTVV-------SG--K---------------KRRLQFVECPN--DING-MIDCAKF 140 (1068)
Q Consensus 88 GKSTLIn~L~~~~~~~~~~tt~~~Iti~-------~~--~---------------k~rl~fIDtPG--dl~s-mld~akv 140 (1068)
+||||+.+|.+..+.. .-.|+||.. .. . ...++|+|||| .+.. +...+..
T Consensus 473 ~KTtLLD~iR~t~v~~---~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~ 549 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAK---KEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSL 549 (1049)
T ss_pred ccccHHHHHhCCCccc---ccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhccc
Confidence 4999999999875421 112334411 11 0 11389999999 3444 3345678
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHH-------------HHHHHHHHHHHH-------h
Q 046721 141 ADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKK-------------KLRKTKQHLKHR-------F 200 (1068)
Q Consensus 141 ADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k-------------~l~~vkk~Lk~~-------~ 200 (1068)
+|++|||+|++.|+..++.+++..+...++| +|+|+||+|+..... +...+.+.+..+ +
T Consensus 550 aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L 628 (1049)
T PRK14845 550 ADLAVLVVDINEGFKPQTIEAINILRQYKTP-FVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKL 628 (1049)
T ss_pred CCEEEEEEECcccCCHhHHHHHHHHHHcCCC-EEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999998 899999999974211 112222222111 1
Q ss_pred ------------cccccCCCeEEEEecccCCcCCchhhcchHHHHHHhhcc----cccccccCCe-EEEEeEEecCCCcc
Q 046721 201 ------------GTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFH----SLSWRTSHPY-ILVDRFEDVTPPER 263 (1068)
Q Consensus 201 ------------~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r----~l~wR~~rPy-lLadrved~~~~~~ 263 (1068)
...+....+++++||++| .++.+|+.+|.....+ .+......|. +.+..+...
T Consensus 629 ~~~G~~~e~~~~~~d~~~~v~iVpVSA~tG-----eGId~Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~----- 698 (1049)
T PRK14845 629 YELGFDADRFDRVQDFTRTVAIVPVSAKTG-----EGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEE----- 698 (1049)
T ss_pred HhcCcchhhhhhhhhcCCCceEEEEEcCCC-----CCHHHHHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEe-----
Confidence 023456789999999976 6677777666543332 2222222332 333333222
Q ss_pred ccccCCCCceEEEEEEEEeeeecCCcEEEEecCCCeeEEeeecCCCCCCCCh
Q 046721 264 VHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAGDYSLAGVTGLADPCPLPS 315 (1068)
Q Consensus 264 i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~GdfqIk~I~~~~DP~pl~~ 315 (1068)
++.|+ +++|.|..+.|++|+.+.+-+.++-...+|..+-+|.|+..
T Consensus 699 -----kG~G~-vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e 744 (1049)
T PRK14845 699 -----KGLGT-TIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDE 744 (1049)
T ss_pred -----cCcee-EEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccc
Confidence 22344 68999999999999999998878877888888888888765
No 149
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.27 E-value=3.3e-11 Score=123.13 Aligned_cols=150 Identities=15% Similarity=0.183 Sum_probs=91.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCCCCceec-cEEEEeCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEEeC
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRG-PVTVVSGKKRRLQFVECPND--INGM-IDCAKFADLALLLIDA 150 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~-~Iti~~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVIDa 150 (1068)
.+..|+|+|++|+|||||+++|.+........+ .+ .+..+......+.++|+||. +..+ ...++.+|++++|+|+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t-~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~ 91 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITPT-QGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDS 91 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCCC-CCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeC
Confidence 357899999999999999999998643222222 12 11122234678999999995 3343 3456889999999999
Q ss_pred CCCC--chhHHHHHHHH---HhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchh
Q 046721 151 SHGF--EMETFEFLNLM---QNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKD 225 (1068)
Q Consensus 151 s~g~--e~~t~eiL~~L---~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~e 225 (1068)
+... ......+...+ ...++| +++|+||+|+... .....+.+.+. +........+++++||++| .+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~-~~~~~i~~~l~--~~~~~~~~~~~~~~Sa~~~-----~g 162 (173)
T cd04155 92 ADKKRLEEAGAELVELLEEEKLAGVP-VLVFANKQDLATA-APAEEIAEALN--LHDLRDRTWHIQACSAKTG-----EG 162 (173)
T ss_pred CCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECCCCccC-CCHHHHHHHcC--CcccCCCeEEEEEeECCCC-----CC
Confidence 8532 11112222222 234677 8899999998752 12233333221 1111111235789999965 56
Q ss_pred hcchHHHHH
Q 046721 226 IGNLAEFIS 234 (1068)
Q Consensus 226 i~nLlR~I~ 234 (1068)
+..+...|+
T Consensus 163 i~~~~~~l~ 171 (173)
T cd04155 163 LQEGMNWVC 171 (173)
T ss_pred HHHHHHHHh
Confidence 666666654
No 150
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.27 E-value=4.8e-11 Score=124.24 Aligned_cols=153 Identities=15% Similarity=0.138 Sum_probs=92.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCChh--HH-HHHHHhcCEEEEEEeCCC
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPNDIN--GM-IDCAKFADLALLLIDASH 152 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGdl~--sm-ld~akvADlVLlVIDas~ 152 (1068)
+..|+|+|++|+|||||+++|++........+.......+......+.++||||... .+ ...+..+|++|+|+|++.
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~ 98 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAAD 98 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCc
Confidence 567899999999999999999976322222221111112223457899999999533 33 445689999999999975
Q ss_pred C--CchhHHHHHHHHH---hCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhc---------ccccCCCeEEEEecccC
Q 046721 153 G--FEMETFEFLNLMQ---NHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFG---------TELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 153 g--~e~~t~eiL~~L~---~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~---------~e~~~~~kVf~ISAl~g 218 (1068)
. +......+..++. ..+.| +++|+||+|+... ....++.+.+...-. .......++|.+||+++
T Consensus 99 ~~s~~~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 176 (190)
T cd00879 99 PERFQESKEELDSLLSDEELANVP-FLILGNKIDLPGA-VSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKR 176 (190)
T ss_pred HHHHHHHHHHHHHHHcCccccCCC-EEEEEeCCCCCCC-cCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCC
Confidence 3 2211123333332 24577 8999999998641 122233332221000 01112356899999965
Q ss_pred CcCCchhhcchHHHHHH
Q 046721 219 GKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 219 ~~y~~~ei~nLlR~I~~ 235 (1068)
.++..+.+.|+.
T Consensus 177 -----~gv~e~~~~l~~ 188 (190)
T cd00879 177 -----QGYGEAFRWLSQ 188 (190)
T ss_pred -----CChHHHHHHHHh
Confidence 567777777653
No 151
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.26 E-value=6.5e-11 Score=119.27 Aligned_cols=145 Identities=19% Similarity=0.226 Sum_probs=87.2
Q ss_pred EEEEECCCCCChhHHHHHHHhccccCC-CCceecc--E-EEE-eCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEEEe
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKLK-VPEVRGP--V-TVV-SGKKRRLQFVECPND--INGMI-DCAKFADLALLLID 149 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~~-~~tt~~~--I-ti~-~~~k~rl~fIDtPGd--l~sml-d~akvADlVLlVID 149 (1068)
.|+|+|.++||||||+++|++...... ..+.... . .+. .+....+.|+||||. +..+. ..++.||++|+|+|
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D 81 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYD 81 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998742222 2221111 1 122 234678899999994 33333 34688999999999
Q ss_pred CCCCCchhH-HHHHHHHHh--------CCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCC
Q 046721 150 ASHGFEMET-FEFLNLMQN--------HGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQG 219 (1068)
Q Consensus 150 as~g~e~~t-~eiL~~L~~--------~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~ 219 (1068)
++....-+. ...+..+.. .+.| +|+|+||+|+..+.. ....... +... .+.++|.+||+++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~-~~~~------~~~~~~~~Sa~~~- 152 (168)
T cd04119 82 VTDRQSFEALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDLTKHRAVSEDEGRL-WAES------KGFKYFETSACTG- 152 (168)
T ss_pred CCCHHHHHhHHHHHHHHHHhccccccCCCce-EEEEEEchhcccccccCHHHHHH-HHHH------cCCeEEEEECCCC-
Confidence 986422111 122332222 2345 899999999973211 1111111 1111 1367999999865
Q ss_pred cCCchhhcchHHHHHH
Q 046721 220 KYTKKDIGNLAEFISV 235 (1068)
Q Consensus 220 ~y~~~ei~nLlR~I~~ 235 (1068)
.++..+...|..
T Consensus 153 ----~gi~~l~~~l~~ 164 (168)
T cd04119 153 ----EGVNEMFQTLFS 164 (168)
T ss_pred ----CCHHHHHHHHHH
Confidence 566666666543
No 152
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.26 E-value=8.8e-11 Score=119.63 Aligned_cols=147 Identities=15% Similarity=0.156 Sum_probs=89.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcccc-CCCCceeccE---EEEe-CCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTK-LKVPEVRGPV---TVVS-GKKRRLQFVECPND--INGM-IDCAKFADLALLLI 148 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~-~~~~tt~~~I---ti~~-~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVI 148 (1068)
..|+|+|.+|+|||||+++|++.... ....+....+ ++.. +....+.++||||. +..+ ...++.+|++|||+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 46899999999999999999986422 2222221111 1222 23467999999994 3343 34568999999999
Q ss_pred eCCCCCchhH-HHHHHHHHhC---CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 149 DASHGFEMET-FEFLNLMQNH---GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 149 Das~g~e~~t-~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
|++..-.-+. ...+..+... ..| +++|.||+|+.............+...+ +.++|.+||+++ .
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~-----~ 149 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDERVVSSERGRQLADQL------GFEFFEASAKEN-----I 149 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCC-EEEEEECcccCcccccCHHHHHHHHHHc------CCEEEEEECCCC-----C
Confidence 9975322111 2334444332 445 8999999999753211111112222222 347999999865 5
Q ss_pred hhcchHHHHHH
Q 046721 225 DIGNLAEFISV 235 (1068)
Q Consensus 225 ei~nLlR~I~~ 235 (1068)
++..+...|..
T Consensus 150 gv~~l~~~l~~ 160 (165)
T cd01865 150 NVKQVFERLVD 160 (165)
T ss_pred CHHHHHHHHHH
Confidence 56666655543
No 153
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.26 E-value=8.9e-11 Score=118.28 Aligned_cols=145 Identities=18% Similarity=0.241 Sum_probs=87.4
Q ss_pred EEEEECCCCCChhHHHHHHHhccc-cCCCCceeccE---EEE-e--CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYT-KLKVPEVRGPV---TVV-S--GKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~-~~~~~tt~~~I---ti~-~--~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
.|+|+|.+++|||||+++|++... .....+....+ .+. . .....+.|+||||. +.. ....++.+|++|+|
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v 81 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILV 81 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEE
Confidence 589999999999999999998632 11112211111 111 1 23567999999993 444 34467899999999
Q ss_pred EeCCCCCchhHH-HHHHHHH--hCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 148 IDASHGFEMETF-EFLNLMQ--NHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 148 IDas~g~e~~t~-eiL~~L~--~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
+|++..-.-... ..+..+. ..++| +|+|+||+|+...........+.+...+ +.++|++||+++ .
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~v~~~~~~~~~~~~------~~~~~~~Sa~~~-----~ 149 (162)
T cd04106 82 FSTTDRESFEAIESWKEKVEAECGDIP-MVLVQTKIDLLDQAVITNEEAEALAKRL------QLPLFRTSVKDD-----F 149 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhcccccCCCHHHHHHHHHHc------CCeEEEEECCCC-----C
Confidence 999753221111 2222222 24778 8999999998753211111112222221 458999999865 4
Q ss_pred hhcchHHHHH
Q 046721 225 DIGNLAEFIS 234 (1068)
Q Consensus 225 ei~nLlR~I~ 234 (1068)
++..+...|+
T Consensus 150 ~v~~l~~~l~ 159 (162)
T cd04106 150 NVTELFEYLA 159 (162)
T ss_pred CHHHHHHHHH
Confidence 5566666654
No 154
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.26 E-value=6.9e-11 Score=139.71 Aligned_cols=129 Identities=20% Similarity=0.248 Sum_probs=90.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhc---cccCCCCceeccEE-EEeCCCeeEEEEeCCCC--hh---------HHHHHHH
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKH---YTKLKVPEVRGPVT-VVSGKKRRLQFVECPND--IN---------GMIDCAK 139 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~---~~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd--l~---------smld~ak 139 (1068)
.+..|+|+|.||||||||+|+|++. .++..+.+|+..+. .+...+..+.++||||. .. .+...++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~ 281 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIK 281 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHh
Confidence 3568999999999999999999986 34455566655443 22335678999999993 11 1345678
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEeccc
Q 046721 140 FADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLI 217 (1068)
Q Consensus 140 vADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~ 217 (1068)
.||++|+|+|++.+.+.+.. ++..+...+.| +|+|+||+|+... ... .+.+. .+.++|.+||++
T Consensus 282 ~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~p-iIlV~NK~Dl~~~--~~~----~~~~~------~~~~~~~vSak~ 345 (442)
T TIGR00450 282 QADLVIYVLDASQPLTKDDF-LIIDLNKSKKP-FILVLNKIDLKIN--SLE----FFVSS------KVLNSSNLSAKQ 345 (442)
T ss_pred hCCEEEEEEECCCCCChhHH-HHHHHhhCCCC-EEEEEECccCCCc--chh----hhhhh------cCCceEEEEEec
Confidence 89999999999987665544 55555556887 8999999999753 111 11111 145688999974
No 155
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.26 E-value=7.7e-11 Score=119.95 Aligned_cols=146 Identities=9% Similarity=0.082 Sum_probs=88.0
Q ss_pred EEEEECCCCCChhHHHHHHHh-ccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEeCCCC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIK-HYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--INGMID-CAKFADLALLLIDASHG 153 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~-~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~smld-~akvADlVLlVIDas~g 153 (1068)
.|+++|.+++|||||+++|.. .+.. ..+++.-.+.........+.|+||||. +..+.. .++.||++|||+|++..
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 589999999999999999954 3432 222222222223335678999999994 445444 46999999999999863
Q ss_pred --CchhHHHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcc
Q 046721 154 --FEMETFEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGN 228 (1068)
Q Consensus 154 --~e~~t~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~n 228 (1068)
++....++..++.. ...| +++|.||+|+.... ...++...+. +.........+|++||++| .++.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~i~~~~~--~~~~~~~~~~~~~~Sak~g-----~gv~~ 151 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAV-LLVFANKQDLPNAM-SAAEVTDKLG--LHSLRNRNWYIQATCATSG-----DGLYE 151 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCC-EEEEEECCCCCCCC-CHHHHHHHhC--ccccCCCCEEEEEeeCCCC-----CCHHH
Confidence 22222234444432 2455 89999999986421 1122222221 0000112345788999976 55566
Q ss_pred hHHHH
Q 046721 229 LAEFI 233 (1068)
Q Consensus 229 LlR~I 233 (1068)
+...|
T Consensus 152 ~~~~l 156 (159)
T cd04150 152 GLDWL 156 (159)
T ss_pred HHHHH
Confidence 65555
No 156
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.26 E-value=8.7e-11 Score=121.55 Aligned_cols=151 Identities=10% Similarity=0.072 Sum_probs=91.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHh-ccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhHHHHH-HHhcCEEEEEEeCC
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIK-HYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--INGMIDC-AKFADLALLLIDAS 151 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~-~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~smld~-akvADlVLlVIDas 151 (1068)
...|+++|.+++|||||+++|.. .+. ...+|+...+........++.|+||||. +..+... ++.||++|||+|++
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t 91 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSN 91 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECC
Confidence 46799999999999999999964 332 2223322222222335678999999994 4455444 69999999999998
Q ss_pred CC--CchhHHHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhh
Q 046721 152 HG--FEMETFEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDI 226 (1068)
Q Consensus 152 ~g--~e~~t~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei 226 (1068)
.. ++.....+..++.. .++| +++|+||+|+.... ...++...+. +.........++++||++| .++
T Consensus 92 ~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~i~~~~~--~~~~~~~~~~~~~~Sa~~g-----~gv 162 (175)
T smart00177 92 DRDRIDEAREELHRMLNEDELRDAV-ILVFANKQDLPDAM-KAAEITEKLG--LHSIRDRNWYIQPTCATSG-----DGL 162 (175)
T ss_pred CHHHHHHHHHHHHHHhhCHhhcCCc-EEEEEeCcCcccCC-CHHHHHHHhC--ccccCCCcEEEEEeeCCCC-----CCH
Confidence 64 22222223333332 2456 89999999986421 1112222211 0000112335778999965 667
Q ss_pred cchHHHHHHh
Q 046721 227 GNLAEFISVM 236 (1068)
Q Consensus 227 ~nLlR~I~~~ 236 (1068)
..+...|...
T Consensus 163 ~e~~~~l~~~ 172 (175)
T smart00177 163 YEGLTWLSNN 172 (175)
T ss_pred HHHHHHHHHH
Confidence 7777666543
No 157
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.25 E-value=8e-11 Score=123.43 Aligned_cols=149 Identities=17% Similarity=0.169 Sum_probs=90.9
Q ss_pred EEEEECCCCCChhHHHHHHHhccc--cCCCCceeccEE---E-EeCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYT--KLKVPEVRGPVT---V-VSGKKRRLQFVECPND--INGM-IDCAKFADLALLLI 148 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~--~~~~~tt~~~It---i-~~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVI 148 (1068)
.|+|||.+|+|||||+++|+.... .....++...+. + +.+...++.|+||||. +..+ ...++.||++|+|+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 81 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLY 81 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEE
Confidence 589999999999999999987632 122222211111 1 1233568899999994 4443 34568899999999
Q ss_pred eCCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 149 DASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 149 Das~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
|++....-+. ...+..+.. .++| +|+|+||+|+...........+.+...+ +.+++.+||++| .
T Consensus 82 D~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~~~~~~~~~l~~~~------~~~~~e~Sa~~~-----~ 149 (191)
T cd04112 82 DITNKASFDNIRAWLTEIKEYAQEDVV-IMLLGNKADMSGERVVKREDGERLAKEY------GVPFMETSAKTG-----L 149 (191)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccchhccccCHHHHHHHHHHc------CCeEEEEeCCCC-----C
Confidence 9986432211 123333333 3566 8999999999642211111122222221 468999999965 5
Q ss_pred hhcchHHHHHHhhc
Q 046721 225 DIGNLAEFISVMKF 238 (1068)
Q Consensus 225 ei~nLlR~I~~~k~ 238 (1068)
++..+...|.....
T Consensus 150 ~v~~l~~~l~~~~~ 163 (191)
T cd04112 150 NVELAFTAVAKELK 163 (191)
T ss_pred CHHHHHHHHHHHHH
Confidence 67777766655443
No 158
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.25 E-value=9.9e-11 Score=118.96 Aligned_cols=148 Identities=14% Similarity=0.175 Sum_probs=90.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCC-CCcee-ccEE--EE-eCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLK-VPEVR-GPVT--VV-SGKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~-~~tt~-~~It--i~-~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
-..|+|+|++|||||||+++|++...... ..+.. ..+. +. .+....+.|+||||. +.. ....++.+|++|+|
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 86 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILT 86 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 36899999999999999999986532221 11111 1111 11 222456888999993 444 35567899999999
Q ss_pred EeCCCCCchhHH-HHH---HHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 148 IDASHGFEMETF-EFL---NLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 148 IDas~g~e~~t~-eiL---~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
+|++.+...... ..+ ..+...++| +|+|+||+|+..+........+.+... ....++.+||++|
T Consensus 87 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~-~i~v~NK~D~~~~~~i~~~~~~~~~~~------~~~~~~~~Sa~~~----- 154 (169)
T cd04114 87 YDITCEESFRCLPEWLREIEQYANNKVI-TILVGNKIDLAERREVSQQRAEEFSDA------QDMYYLETSAKES----- 154 (169)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccccCHHHHHHHHHH------cCCeEEEeeCCCC-----
Confidence 999864322111 222 222334677 788999999874322112222222222 1367899999965
Q ss_pred hhhcchHHHHHH
Q 046721 224 KDIGNLAEFISV 235 (1068)
Q Consensus 224 ~ei~nLlR~I~~ 235 (1068)
.++..+...|+.
T Consensus 155 ~gv~~l~~~i~~ 166 (169)
T cd04114 155 DNVEKLFLDLAC 166 (169)
T ss_pred CCHHHHHHHHHH
Confidence 556666666543
No 159
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.25 E-value=1.2e-10 Score=118.32 Aligned_cols=146 Identities=12% Similarity=0.150 Sum_probs=88.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccC-CCCceeccEE---EE-eCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVRGPVT---VV-SGKKRRLQFVECPND--INGM-IDCAKFADLALLLI 148 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~~~It---i~-~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVI 148 (1068)
..|+|+|.+|+|||||+++|++..... ...+....+. +. .+....+.++||||. +..+ ...++.||++|||+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~ 82 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 82 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEE
Confidence 579999999999999999999763221 1121111111 11 123467899999993 3343 34568899999999
Q ss_pred eCCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCcHHH-HHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 149 DASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTDKKK-LRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 149 Das~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~-l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
|++..-.-.. ..++..+.. .++| +|+|.||+|+...... ..... .+... .+.+++++||++|
T Consensus 83 d~~~~~s~~~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~~~~~~-~~~~~------~~~~~~~~Sa~~~----- 149 (166)
T cd01869 83 DVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTDKRVVDYSEAQ-EFADE------LGIPFLETSAKNA----- 149 (166)
T ss_pred ECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEEChhcccccCCCHHHHH-HHHHH------cCCeEEEEECCCC-----
Confidence 9986322111 123333333 3566 8899999998642211 11121 12222 1568999999865
Q ss_pred hhhcchHHHHHH
Q 046721 224 KDIGNLAEFISV 235 (1068)
Q Consensus 224 ~ei~nLlR~I~~ 235 (1068)
.++..+...|+.
T Consensus 150 ~~v~~~~~~i~~ 161 (166)
T cd01869 150 TNVEQAFMTMAR 161 (166)
T ss_pred cCHHHHHHHHHH
Confidence 556666655544
No 160
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.25 E-value=4e-11 Score=152.00 Aligned_cols=144 Identities=15% Similarity=0.194 Sum_probs=101.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc---c----------CCCCceeccEEEE-------eC---------------CCe
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT---K----------LKVPEVRGPVTVV-------SG---------------KKR 120 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~---~----------~~~~tt~~~Iti~-------~~---------------~k~ 120 (1068)
-++|||+|++++|||||+.+|+.... . ....+....+|+. .. ...
T Consensus 19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
T PLN00116 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEY 98 (843)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCce
Confidence 47899999999999999999986421 0 0010111222221 11 256
Q ss_pred eEEEEeCCC--ChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC-----cH----HH
Q 046721 121 RLQFVECPN--DING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT-----DK----KK 188 (1068)
Q Consensus 121 rl~fIDtPG--dl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk-----~~----k~ 188 (1068)
.++|||||| +|.. +..++..+|.+|+||||..|+..++..+++.+...++| +|+++||+|+.- +. ..
T Consensus 99 ~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p-~i~~iNK~D~~~~~~~~~~~~~~~~ 177 (843)
T PLN00116 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEEAYQT 177 (843)
T ss_pred EEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCC-EEEEEECCcccchhhcCCHHHHHHH
Confidence 789999999 5554 88889999999999999999999999999999999999 688999999971 11 34
Q ss_pred HHHHHHHHHHH---hccc------c-cCCCeEEEEecccCCc
Q 046721 189 LRKTKQHLKHR---FGTE------L-YHGAKLFKLSGLIQGK 220 (1068)
Q Consensus 189 l~~vkk~Lk~~---~~~e------~-~~~~kVf~ISAl~g~~ 220 (1068)
+..++..++.. +... + |....|.+.|+..+|.
T Consensus 178 ~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~ 219 (843)
T PLN00116 178 FSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWA 219 (843)
T ss_pred HHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEE
Confidence 66677766622 1111 1 3344566677776654
No 161
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.25 E-value=1.6e-10 Score=117.93 Aligned_cols=146 Identities=18% Similarity=0.222 Sum_probs=89.2
Q ss_pred EEEEECCCCCChhHHHHHHHhccccCCCCceeccEEE---EeCCCeeEEEEeCCCChh--H-HHHHHHhcCEEEEEEeCC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTV---VSGKKRRLQFVECPNDIN--G-MIDCAKFADLALLLIDAS 151 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti---~~~~k~rl~fIDtPGdl~--s-mld~akvADlVLlVIDas 151 (1068)
.|+|||.+|||||||+++|++..-.....++...+++ ......++.++||||... . +...++.||++|||+|++
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~ 81 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVD 81 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECC
Confidence 5899999999999999999886322222222222332 223467899999999532 2 455578999999999998
Q ss_pred CCCchhHH--HHHHHHHh--CCCCcEEEEEeCCCcCCcHH--HHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchh
Q 046721 152 HGFEMETF--EFLNLMQN--HGLPNVMGVLTHLDKFTDKK--KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKD 225 (1068)
Q Consensus 152 ~g~e~~t~--eiL~~L~~--~GlP~vIvVLNKiDlvk~~k--~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~e 225 (1068)
.+..-+.. ..+..+.. .++| +++|+||+|+..... .+......+...+ .....++.+||+++ .+
T Consensus 82 ~~~s~~~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~-----~~ 151 (166)
T cd01893 82 RPSTLERIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGSSQAGLEEEMLPIMNEF----REIETCVECSAKTL-----IN 151 (166)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhcccccchhHHHHHHHHHHHHH----hcccEEEEeccccc-----cC
Confidence 65433321 23333433 3566 899999999975321 1122222222222 11247899999865 44
Q ss_pred hcchHHHH
Q 046721 226 IGNLAEFI 233 (1068)
Q Consensus 226 i~nLlR~I 233 (1068)
+..+...+
T Consensus 152 v~~lf~~~ 159 (166)
T cd01893 152 VSEVFYYA 159 (166)
T ss_pred HHHHHHHH
Confidence 55554444
No 162
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.24 E-value=1.3e-10 Score=118.90 Aligned_cols=146 Identities=16% Similarity=0.183 Sum_probs=88.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCCCceec----cEEEEe-CCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRG----PVTVVS-GKKRRLQFVECPND--INGM-IDCAKFADLALLLI 148 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~----~Iti~~-~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVI 148 (1068)
..|+|||.+|||||||+++|++.........+.+ ...+.. +...++.++||||. +.++ ...++.+|++|||+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~ 84 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 84 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 5799999999999999999998642221111111 111222 23458899999993 4443 44668999999999
Q ss_pred eCCCCCchhHH-HHHHHHHh---CCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 149 DASHGFEMETF-EFLNLMQN---HGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 149 Das~g~e~~t~-eiL~~L~~---~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
|++....-+.. .++..+.. .++| +|+|.||+|+..... .......... . .+..+|.+||+.+
T Consensus 85 d~~~~~s~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~~~~~~~~~~~-~------~~~~~~e~Sa~~~----- 151 (168)
T cd01866 85 DITRRETFNHLTSWLEDARQHSNSNMT-IMLIGNKCDLESRREVSYEEGEAFAK-E------HGLIFMETSAKTA----- 151 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccCCCHHHHHHHHH-H------cCCEEEEEeCCCC-----
Confidence 99853222211 34444433 2566 899999999974211 1112222111 1 2567899999865
Q ss_pred hhhcchHHHHHH
Q 046721 224 KDIGNLAEFISV 235 (1068)
Q Consensus 224 ~ei~nLlR~I~~ 235 (1068)
..+..+...++.
T Consensus 152 ~~i~~~~~~~~~ 163 (168)
T cd01866 152 SNVEEAFINTAK 163 (168)
T ss_pred CCHHHHHHHHHH
Confidence 555555555543
No 163
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.24 E-value=1e-10 Score=118.85 Aligned_cols=147 Identities=19% Similarity=0.223 Sum_probs=87.2
Q ss_pred EEEEECCCCCChhHHHHHHHhccccCC-CCcee-ccEE--E-EeCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEEEe
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKLK-VPEVR-GPVT--V-VSGKKRRLQFVECPND--INGMI-DCAKFADLALLLID 149 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~~-~~tt~-~~It--i-~~~~k~rl~fIDtPGd--l~sml-d~akvADlVLlVID 149 (1068)
.|+|+|++|+|||||+++|++...... ..+.. ..+. + ..+....+.|+||||. +..+. ..++.||++|+|+|
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 81 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 81 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEE
Confidence 689999999999999999998632211 11111 1111 1 1223456789999993 44433 45688999999999
Q ss_pred CCCCCchhHH-----HHHHHHHh---CCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCc
Q 046721 150 ASHGFEMETF-----EFLNLMQN---HGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGK 220 (1068)
Q Consensus 150 as~g~e~~t~-----eiL~~L~~---~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~ 220 (1068)
++.+...+.. +++..+.. .++| +++|+||+|+..+.. ........++. ....++|++||++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~-- 152 (172)
T cd01862 82 VTNPKSFESLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLEEKRQVSTKKAQQWCQS------NGNIPYFETSAKEA-- 152 (172)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccCCCCce-EEEEEECcccccccccCHHHHHHHHHH------cCCceEEEEECCCC--
Confidence 9864322111 12222211 2677 789999999973211 11222222111 23468999999865
Q ss_pred CCchhhcchHHHHHHh
Q 046721 221 YTKKDIGNLAEFISVM 236 (1068)
Q Consensus 221 y~~~ei~nLlR~I~~~ 236 (1068)
.++..+...|...
T Consensus 153 ---~gv~~l~~~i~~~ 165 (172)
T cd01862 153 ---INVEQAFETIARK 165 (172)
T ss_pred ---CCHHHHHHHHHHH
Confidence 5555666555443
No 164
>PTZ00369 Ras-like protein; Provisional
Probab=99.24 E-value=1.1e-10 Score=122.32 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=89.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc-cCCCCceeccEE--E-EeCCCeeEEEEeCCC--ChhHHH-HHHHhcCEEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT-KLKVPEVRGPVT--V-VSGKKRRLQFVECPN--DINGMI-DCAKFADLALLLI 148 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~-~~~~~tt~~~It--i-~~~~k~rl~fIDtPG--dl~sml-d~akvADlVLlVI 148 (1068)
-..|+|||.+|||||||++++++... .....+....+. + +......+.|+|||| ++..+. ..++.+|++|+|+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~ 84 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVY 84 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEE
Confidence 46899999999999999999997632 222222211111 1 223355788999999 455544 3568999999999
Q ss_pred eCCCCCchhH-HHHHHHH----HhCCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 149 DASHGFEMET-FEFLNLM----QNHGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 149 Das~g~e~~t-~eiL~~L----~~~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
|++..-.-+. ...+..+ ...++| +|+|.||+|+..... ....... +...+ +.++|.+||++|
T Consensus 85 D~s~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~i~~~~~~~-~~~~~------~~~~~e~Sak~~---- 152 (189)
T PTZ00369 85 SITSRSSFEEIASFREQILRVKDKDRVP-MILVGNKCDLDSERQVSTGEGQE-LAKSF------GIPFLETSAKQR---- 152 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccCHHHHHH-HHHHh------CCEEEEeeCCCC----
Confidence 9986432111 1222222 223667 899999999864211 1111111 11111 457999999865
Q ss_pred chhhcchHHHHHHhh
Q 046721 223 KKDIGNLAEFISVMK 237 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~k 237 (1068)
.++.++...|....
T Consensus 153 -~gi~~~~~~l~~~l 166 (189)
T PTZ00369 153 -VNVDEAFYELVREI 166 (189)
T ss_pred -CCHHHHHHHHHHHH
Confidence 56666666664433
No 165
>PTZ00416 elongation factor 2; Provisional
Probab=99.24 E-value=5.4e-11 Score=150.59 Aligned_cols=146 Identities=18% Similarity=0.193 Sum_probs=102.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc-------------cCCCCceeccEEEEe------C----------CCeeEEEEe
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT-------------KLKVPEVRGPVTVVS------G----------KKRRLQFVE 126 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~-------------~~~~~tt~~~Iti~~------~----------~k~rl~fID 126 (1068)
.++|||||++++|||||+++|+.... .....+...++|+.+ . ....++|+|
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD 98 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID 98 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence 46999999999999999999997421 001111122344321 1 146799999
Q ss_pred CCC--Chh-HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcC----C-c----HHHHHHHHH
Q 046721 127 CPN--DIN-GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKF----T-D----KKKLRKTKQ 194 (1068)
Q Consensus 127 tPG--dl~-smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlv----k-~----~k~l~~vkk 194 (1068)
||| +|. .+..++..+|++|+|||+..|+..++..+++.+...++| +|+|+||+|+. . + ...+..++.
T Consensus 99 tPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p-~iv~iNK~D~~~~~~~~~~~~~~~~~~~ii~ 177 (836)
T PTZ00416 99 SPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIR-PVLFINKVDRAILELQLDPEEIYQNFVKTIE 177 (836)
T ss_pred CCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCC-EEEEEEChhhhhhhcCCCHHHHHHHHHHHHH
Confidence 999 454 488889999999999999999999999999999999998 78899999997 2 1 134667777
Q ss_pred HHHHHhccc----------ccCCCeEEEEecccCCcCC
Q 046721 195 HLKHRFGTE----------LYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 195 ~Lk~~~~~e----------~~~~~kVf~ISAl~g~~y~ 222 (1068)
.++..+... .+....|..-|+..||.|+
T Consensus 178 ~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~ 215 (836)
T PTZ00416 178 NVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFT 215 (836)
T ss_pred HHHHHHHhcccccccceecceeccEEEEEeccccceee
Confidence 777655311 1122234555666666544
No 166
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.24 E-value=1.6e-10 Score=117.64 Aligned_cols=146 Identities=17% Similarity=0.206 Sum_probs=87.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE--E-EeCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEEEe
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT--V-VSGKKRRLQFVECPND--INGMI-DCAKFADLALLLID 149 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It--i-~~~~k~rl~fIDtPGd--l~sml-d~akvADlVLlVID 149 (1068)
..|+|+|.+|+|||||++++++.. ......+...... + .......+.|+||||. +..+. .....||++|+|+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 468999999999999999998763 2222222111111 1 1233567889999993 44433 34578999999999
Q ss_pred CCCCCchhH-HHHHHHHHh------CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 150 ASHGFEMET-FEFLNLMQN------HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 150 as~g~e~~t-~eiL~~L~~------~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
.+....... ..++..+.. .++| +|+|.||+|+.............+... ....+|.+||++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~~------~~~~~~e~SA~~g---- 150 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIP-IMLVGNKCDESHKREVSSNEGAACATE------WNCAFMETSAKTN---- 150 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCC-EEEEEECccccccCeecHHHHHHHHHH------hCCcEEEeecCCC----
Confidence 986443221 123333322 3577 899999999965221111111111111 1467899999965
Q ss_pred chhhcchHHHHH
Q 046721 223 KKDIGNLAEFIS 234 (1068)
Q Consensus 223 ~~ei~nLlR~I~ 234 (1068)
.++..+.+.|.
T Consensus 151 -~~v~~~f~~l~ 161 (165)
T cd04140 151 -HNVQELFQELL 161 (165)
T ss_pred -CCHHHHHHHHH
Confidence 55666665554
No 167
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.23 E-value=1.9e-10 Score=116.02 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=89.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccC-CCCceeccE---EEEe-CCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVRGPV---TVVS-GKKRRLQFVECPND--INGMI-DCAKFADLALLLI 148 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~~~I---ti~~-~~k~rl~fIDtPGd--l~sml-d~akvADlVLlVI 148 (1068)
..|+|+|++|+|||||+++|++..... ...+....+ ++.. .....+.++||||. +..+. ..++.+|++|||+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 468999999999999999999874322 111111111 1222 23557889999994 33333 3567899999999
Q ss_pred eCCCCCch-hHHHHHHHHHhC---CCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 149 DASHGFEM-ETFEFLNLMQNH---GLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 149 Das~g~e~-~t~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
|++.+-.- ....++..+..+ ++| +|+|+||+|+..... ......+... .. +..++++||++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~~~~~~~~~~-~~------~~~~~~~Sa~~~----- 148 (163)
T cd01860 82 DITSEESFEKAKSWVKELQRNASPNII-IALVGNKADLESKRQVSTEEAQEYAD-EN------GLLFFETSAKTG----- 148 (163)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccCcCCHHHHHHHHH-Hc------CCEEEEEECCCC-----
Confidence 99854221 122445555444 355 788999999873211 1222222221 11 367999999865
Q ss_pred hhhcchHHHHHH
Q 046721 224 KDIGNLAEFISV 235 (1068)
Q Consensus 224 ~ei~nLlR~I~~ 235 (1068)
..+.++...|..
T Consensus 149 ~~v~~l~~~l~~ 160 (163)
T cd01860 149 ENVNELFTEIAK 160 (163)
T ss_pred CCHHHHHHHHHH
Confidence 566666655543
No 168
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.23 E-value=1.6e-10 Score=116.82 Aligned_cols=146 Identities=17% Similarity=0.213 Sum_probs=88.4
Q ss_pred EEEEECCCCCChhHHHHHHHhc---cccCCCCceeccEE---E--EeCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKH---YTKLKVPEVRGPVT---V--VSGKKRRLQFVECPND--INGMI-DCAKFADLALL 146 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~---~~~~~~~tt~~~It---i--~~~~k~rl~fIDtPGd--l~sml-d~akvADlVLl 146 (1068)
.|+|||.+++|||||+++|... +......++...+. + ..+....+.++||||. +..++ ..+..+|++|+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFIL 81 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence 5899999999999999999854 22222222211111 1 1234678999999993 33443 34688999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHh--CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 147 LIDASHGFEMET-FEFLNLMQN--HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 147 VIDas~g~e~~t-~eiL~~L~~--~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
|+|++....-.. ...+..+.. .+.| +|+|+||+|+......-....+.+... .+..++.+||.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~----- 149 (164)
T cd04101 82 VYDVSNKASFENCSRWVNKVRTASKHMP-GVLVGNKMDLADKAEVTDAQAQAFAQA------NQLKFFKTSALRG----- 149 (164)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccCCCHHHHHHHHHH------cCCeEEEEeCCCC-----
Confidence 999985422111 233343333 3566 899999999865321111111222222 1467899999865
Q ss_pred hhhcchHHHHHH
Q 046721 224 KDIGNLAEFISV 235 (1068)
Q Consensus 224 ~ei~nLlR~I~~ 235 (1068)
.++..+...|..
T Consensus 150 ~gi~~l~~~l~~ 161 (164)
T cd04101 150 VGYEEPFESLAR 161 (164)
T ss_pred CChHHHHHHHHH
Confidence 566666665543
No 169
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.23 E-value=1.8e-10 Score=117.62 Aligned_cols=147 Identities=15% Similarity=0.167 Sum_probs=88.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCC-CCceeccE---EEE-eCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLK-VPEVRGPV---TVV-SGKKRRLQFVECPND--INGMI-DCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~-~~tt~~~I---ti~-~~~k~rl~fIDtPGd--l~sml-d~akvADlVLlV 147 (1068)
...|+|+|.+|+|||||+++|++...... ..+..... .+. .+....+.++||||. +..+. ..++.||++|||
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 46899999999999999999997632221 22211111 122 223467899999993 34433 456899999999
Q ss_pred EeCCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 148 IDASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 148 IDas~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
+|++.+..-.. ...+..+.. .++| +++|.||+|+..... ......... ..+ ..+++.+||+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~-~~~------~~~~~~~Sa~~~---- 150 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEHASEDVE-RMLVGNKCDMEEKRVVSKEEGEALA-DEY------GIKFLETSAKAN---- 150 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECcccccccCCCHHHHHHHH-HHc------CCEEEEEeCCCC----
Confidence 99976432211 123333332 3566 789999999974221 111222211 111 457899999865
Q ss_pred chhhcchHHHHHH
Q 046721 223 KKDIGNLAEFISV 235 (1068)
Q Consensus 223 ~~ei~nLlR~I~~ 235 (1068)
..+..+...|+.
T Consensus 151 -~~v~~~~~~i~~ 162 (167)
T cd01867 151 -INVEEAFFTLAK 162 (167)
T ss_pred -CCHHHHHHHHHH
Confidence 556666655543
No 170
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.23 E-value=9.9e-11 Score=128.77 Aligned_cols=143 Identities=17% Similarity=0.203 Sum_probs=94.9
Q ss_pred EEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEe-CCCeeEEEEeCCCC-----hh-----HHHHHHHhcCE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVS-GKKRRLQFVECPND-----IN-----GMIDCAKFADL 143 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~-~~k~rl~fIDtPGd-----l~-----smld~akvADl 143 (1068)
-|++||.||+|||||+|+|+... +.....||-.|-. .+. ....++++.|.||- ++ ..|..+..|++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~ 277 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKG 277 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhce
Confidence 47889999999999999999874 3445555544432 333 34556999999992 22 48899999999
Q ss_pred EEEEEeCCCCCchhH---HHHH-HHHHh--CCC--CcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEec
Q 046721 144 ALLLIDASHGFEMET---FEFL-NLMQN--HGL--PNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSG 215 (1068)
Q Consensus 144 VLlVIDas~g~e~~t---~eiL-~~L~~--~Gl--P~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISA 215 (1068)
++||||.+.+..... ..+| ..|.. .++ .+.++|+||+|+...+ +..++.|..++ ....||++||
T Consensus 278 l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~l-----q~~~V~pvsA 349 (366)
T KOG1489|consen 278 LLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRL-----QNPHVVPVSA 349 (366)
T ss_pred EEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHc-----CCCcEEEeee
Confidence 999999987632222 2222 22322 222 2378899999986422 23345565555 3447999999
Q ss_pred ccCCcCCchhhcchHHHH
Q 046721 216 LIQGKYTKKDIGNLAEFI 233 (1068)
Q Consensus 216 l~g~~y~~~ei~nLlR~I 233 (1068)
+++ ..+.+|++.|
T Consensus 350 ~~~-----egl~~ll~~l 362 (366)
T KOG1489|consen 350 KSG-----EGLEELLNGL 362 (366)
T ss_pred ccc-----cchHHHHHHH
Confidence 965 5556666554
No 171
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.22 E-value=1.7e-10 Score=144.13 Aligned_cols=108 Identities=15% Similarity=0.214 Sum_probs=82.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc-------------ccCCCCceeccEEE----------EeCCCeeEEEEeCCC--C
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY-------------TKLKVPEVRGPVTV----------VSGKKRRLQFVECPN--D 130 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~-------------~~~~~~tt~~~Iti----------~~~~k~rl~fIDtPG--d 130 (1068)
.++|+|||+.++|||||+++|+... ...........+|+ ..+.+.+++|||||| +
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 4799999999999999999997531 00000001112221 224578899999999 4
Q ss_pred hh-HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC
Q 046721 131 IN-GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 131 l~-smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk 184 (1068)
|. .+..++..||++|||+|+..|+..++..++..+...++| +|+|+||+|...
T Consensus 99 f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~ 152 (720)
T TIGR00490 99 FGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVK-PVLFINKVDRLI 152 (720)
T ss_pred cHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCC-EEEEEEChhccc
Confidence 54 478889999999999999999999999999988888998 578999999863
No 172
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.22 E-value=1.6e-10 Score=116.56 Aligned_cols=143 Identities=16% Similarity=0.194 Sum_probs=86.7
Q ss_pred EEEEECCCCCChhHHHHHHHhccccC-CCCcee---ccEEEE-eCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEEe
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVR---GPVTVV-SGKKRRLQFVECPND--INGM-IDCAKFADLALLLID 149 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~---~~Iti~-~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVID 149 (1068)
.|+|+|++|+|||||+++|++..... ...+.. ....+. ......+.|+||||. +..+ ...++.+|++|+|+|
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 81 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYD 81 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEE
Confidence 68999999999999999999863211 111111 111122 233567899999993 3333 334688999999999
Q ss_pred CCCCCchhHH-HHHHHHHh----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 150 ASHGFEMETF-EFLNLMQN----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 150 as~g~e~~t~-eiL~~L~~----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
++....-+.. .++..+.. .+.| +++|+||+|+..............+ . ...++|++||++| .
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~~~~~~~~~~~~~~~-~------~~~~~~~~Sa~~~-----~ 148 (161)
T cd01863 82 VTRRDTFTNLETWLNELETYSTNNDIV-KMLVGNKIDKENREVTREEGLKFAR-K------HNMLFIETSAKTR-----D 148 (161)
T ss_pred CCCHHHHHhHHHHHHHHHHhCCCCCCc-EEEEEECCcccccccCHHHHHHHHH-H------cCCEEEEEecCCC-----C
Confidence 9754322221 23333332 4566 7899999999732211222222211 1 2567999999865 4
Q ss_pred hhcchHHHH
Q 046721 225 DIGNLAEFI 233 (1068)
Q Consensus 225 ei~nLlR~I 233 (1068)
++..++..+
T Consensus 149 gi~~~~~~~ 157 (161)
T cd01863 149 GVQQAFEEL 157 (161)
T ss_pred CHHHHHHHH
Confidence 555665444
No 173
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.22 E-value=1.5e-10 Score=119.37 Aligned_cols=148 Identities=16% Similarity=0.244 Sum_probs=88.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE-EEe--CCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEEe
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT-VVS--GKKRRLQFVECPND--INGM-IDCAKFADLALLLID 149 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It-i~~--~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVID 149 (1068)
+.|+|+|++|+|||||+++|++.. ......++....+ ... .....+.++||||. +..+ -..+..+|.+|+|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 579999999999999999999763 2222222222112 122 22456889999994 3332 235678999999999
Q ss_pred CCCCCchhHH-----HHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 150 ASHGFEMETF-----EFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 150 as~g~e~~t~-----eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
++.....+.. .+++.....++| +|+|+||+|+.............+...+ ..+++++||+++ .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~-----~ 149 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQRQVSTEEGKELAESW------GAAFLESSAREN-----E 149 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcCccCHHHHHHHHHHc------CCeEEEEeCCCC-----C
Confidence 9864332222 222222234677 8999999998642111111112222221 368999999864 5
Q ss_pred hhcchHHHHHHh
Q 046721 225 DIGNLAEFISVM 236 (1068)
Q Consensus 225 ei~nLlR~I~~~ 236 (1068)
++..+...|...
T Consensus 150 gv~~l~~~l~~~ 161 (180)
T cd04137 150 NVEEAFELLIEE 161 (180)
T ss_pred CHHHHHHHHHHH
Confidence 666666555443
No 174
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.22 E-value=1.1e-10 Score=140.66 Aligned_cols=122 Identities=18% Similarity=0.279 Sum_probs=89.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc--c------c----CC-C------CceeccEEE------EeCCCeeEEEEeCCC-
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY--T------K----LK-V------PEVRGPVTV------VSGKKRRLQFVECPN- 129 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~--~------~----~~-~------~tt~~~Iti------~~~~k~rl~fIDtPG- 129 (1068)
.++|+|||++|+|||||+++|+... . . .. . .....++++ +...+.+++|+||||
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 5799999999999999999997421 0 0 00 0 001122332 224578899999999
Q ss_pred -ChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHh
Q 046721 130 -DING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRF 200 (1068)
Q Consensus 130 -dl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~ 200 (1068)
++.. +..++..+|++|+|+|++.+++.++..++..+...++| +|+++||+|+... ....+...++..+
T Consensus 90 ~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a--~~~~~l~~i~~~l 159 (526)
T PRK00741 90 EDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP-IFTFINKLDRDGR--EPLELLDEIEEVL 159 (526)
T ss_pred hhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC-EEEEEECCccccc--CHHHHHHHHHHHh
Confidence 4554 77788999999999999999998899999999889999 8999999998742 2334455555554
No 175
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.21 E-value=2.9e-10 Score=115.28 Aligned_cols=146 Identities=16% Similarity=0.197 Sum_probs=86.8
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccC-CCCcee-c--cEEEEe-CCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVR-G--PVTVVS-GKKRRLQFVECPND--INGMID-CAKFADLALLLI 148 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~-~--~Iti~~-~~k~rl~fIDtPGd--l~smld-~akvADlVLlVI 148 (1068)
..|+|+|.+|||||||+++|++..... ...+.. . ...+.. +....+.++||||. +..+.. .++.||++|+|+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 83 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 83 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEE
Confidence 479999999999999999999764221 111111 1 111222 22457899999994 344433 468899999999
Q ss_pred eCCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 149 DASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 149 Das~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
|++....-+. ...+..+.. .++| +++|+||+|+.............+... .+.+++.+||++| .
T Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~-----~ 151 (165)
T cd01868 84 DITKKQTFENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVPTEEAKAFAEK------NGLSFIETSALDG-----T 151 (165)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccccCCHHHHHHHHHH------cCCEEEEEECCCC-----C
Confidence 9985332211 123333332 2466 899999999874221111111112111 2467999999865 5
Q ss_pred hhcchHHHHH
Q 046721 225 DIGNLAEFIS 234 (1068)
Q Consensus 225 ei~nLlR~I~ 234 (1068)
.+..+...|.
T Consensus 152 ~v~~l~~~l~ 161 (165)
T cd01868 152 NVEEAFKQLL 161 (165)
T ss_pred CHHHHHHHHH
Confidence 5666665553
No 176
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.21 E-value=2.6e-10 Score=115.41 Aligned_cols=146 Identities=16% Similarity=0.191 Sum_probs=86.4
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCC-CCceecc--EEEE-eCCCeeEEEEeCCC--ChhHHHH-HHHhcCEEEEEEe
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLK-VPEVRGP--VTVV-SGKKRRLQFVECPN--DINGMID-CAKFADLALLLID 149 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~-~~tt~~~--Iti~-~~~k~rl~fIDtPG--dl~smld-~akvADlVLlVID 149 (1068)
..|+|+|.+|+|||||+++++....... ..+.... .++. .+....+.|+|||| .+..+.. .+..||++|+|+|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d 81 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEE
Confidence 4689999999999999999887632222 2221111 1122 22345688999999 3555544 4688999999999
Q ss_pred CCCCCchhH-HHHHHHHHh----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 150 ASHGFEMET-FEFLNLMQN----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 150 as~g~e~~t-~eiL~~L~~----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
++..-.-.. ...+..+.. .++| +++|+||+|+.............+...+ +.++|++||+++ .
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~-----~ 149 (163)
T cd04176 82 LVNQQTFQDIKPMRDQIVRVKGYEKVP-IILVGNKVDLESEREVSSAEGRALAEEW------GCPFMETSAKSK-----T 149 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcCccCHHHHHHHHHHh------CCEEEEecCCCC-----C
Confidence 976322111 122222322 4677 8899999998642111111112222221 457899999865 4
Q ss_pred hhcchHHHHH
Q 046721 225 DIGNLAEFIS 234 (1068)
Q Consensus 225 ei~nLlR~I~ 234 (1068)
.+..+...|.
T Consensus 150 ~v~~l~~~l~ 159 (163)
T cd04176 150 MVNELFAEIV 159 (163)
T ss_pred CHHHHHHHHH
Confidence 5555554443
No 177
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.20 E-value=2.7e-10 Score=127.41 Aligned_cols=215 Identities=21% Similarity=0.315 Sum_probs=146.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc-----------cCCCCce----eccEE--E-----------Ee---------
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT-----------KLKVPEV----RGPVT--V-----------VS--------- 116 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~-----------~~~~~tt----~~~It--i-----------~~--------- 116 (1068)
++..+|++.|+.++|||||+.+|+--.. ....++. ...|+ + ..
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 3446789999999999999998874210 0000000 01111 0 00
Q ss_pred ---CCCeeEEEEeCCC---ChhHHHHHH--HhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHH
Q 046721 117 ---GKKRRLQFVECPN---DINGMIDCA--KFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKK 188 (1068)
Q Consensus 117 ---~~k~rl~fIDtPG---dl~smld~a--kvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~ 188 (1068)
.-++-+.|+||-| .+..+|..+ ...|.++|++-|+.|++.-+.++|-++.+.++| +|+|+||+|+..+ ..
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lP-viVvvTK~D~~~d-dr 272 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELP-VIVVVTKIDMVPD-DR 272 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCC-EEEEEEecccCcH-HH
Confidence 0134578999999 366678776 678999999999999999999999999999999 8999999999864 44
Q ss_pred HHHHHHHHHHHhcc---------------------ccc-CCCeEEEEecccCCcCCchhhcchHHHHHHhhccccccccc
Q 046721 189 LRKTKQHLKHRFGT---------------------ELY-HGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWRTS 246 (1068)
Q Consensus 189 l~~vkk~Lk~~~~~---------------------e~~-~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR~~ 246 (1068)
++.+.+.+...+.. ... .-.+||++|+.+| .++.-|.+++... |+.-.|...
T Consensus 273 ~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg-----~GldlL~e~f~~L-p~rr~~~d~ 346 (527)
T COG5258 273 FQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTG-----EGLDLLDEFFLLL-PKRRRWDDE 346 (527)
T ss_pred HHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccC-----ccHHHHHHHHHhC-CcccccCCC
Confidence 55555554433210 011 1568999999976 4555555777544 443488888
Q ss_pred CCe-EEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecC--CCe---eEEeeecC
Q 046721 247 HPY-ILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGA--GDY---SLAGVTGL 307 (1068)
Q Consensus 247 rPy-lLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~--Gdf---qIk~I~~~ 307 (1068)
.|+ |.++++-.++ +.|+ +|.|.|..+.|..|+.+.|--. |.| .|++|+..
T Consensus 347 g~flmYId~iYsVt----------GVGt-VvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh 402 (527)
T COG5258 347 GPFLMYIDKIYSVT----------GVGT-VVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMH 402 (527)
T ss_pred CCeEEEEEeeEEEe----------eeEE-EEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEe
Confidence 876 5566665553 2455 4899999999999999987433 444 47777654
No 178
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.20 E-value=1.3e-10 Score=140.15 Aligned_cols=122 Identities=14% Similarity=0.251 Sum_probs=89.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc--ccC------------CC-----CceeccEEE------EeCCCeeEEEEeCCC-
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY--TKL------------KV-----PEVRGPVTV------VSGKKRRLQFVECPN- 129 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~--~~~------------~~-----~tt~~~Iti------~~~~k~rl~fIDtPG- 129 (1068)
.++|||||++++|||||+++|+... ... .. .....++++ +...+.++.|+||||
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~ 90 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH 90 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh
Confidence 5799999999999999999986421 000 00 001122332 234578999999999
Q ss_pred -ChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHh
Q 046721 130 -DING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRF 200 (1068)
Q Consensus 130 -dl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~ 200 (1068)
+|.. +..++..||++|+|+|++.+++.++..++..+...++| +|+|+||+|+... ....+...++..+
T Consensus 91 ~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~P-iivviNKiD~~~~--~~~~ll~~i~~~l 160 (527)
T TIGR00503 91 EDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTP-IFTFMNKLDRDIR--DPLELLDEVENEL 160 (527)
T ss_pred hhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECccccCC--CHHHHHHHHHHHh
Confidence 4554 77788999999999999999998888999988888999 8999999998641 2234455555554
No 179
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.20 E-value=2e-10 Score=121.82 Aligned_cols=147 Identities=17% Similarity=0.193 Sum_probs=87.3
Q ss_pred EEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccE---EE-EeCCCeeEEEEeCCCC--h----h-H----HHHHHHhc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPV---TV-VSGKKRRLQFVECPND--I----N-G----MIDCAKFA 141 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~I---ti-~~~~k~rl~fIDtPGd--l----~-s----mld~akvA 141 (1068)
.|+|+|.+|||||||++++++.. ......++...+ .+ ..+...++.|+||||. + . . ....++.|
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~a 81 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNS 81 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccC
Confidence 58999999999999999998753 222223322111 12 2233467889999982 1 1 1 22346889
Q ss_pred CEEEEEEeCCCCCchhHH-HHHHHHH------hCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 142 DLALLLIDASHGFEMETF-EFLNLMQ------NHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 142 DlVLlVIDas~g~e~~t~-eiL~~L~------~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
|++|||+|++.+.+.+.. .++..+. ..++| +|+|.||+|+...........+.+... . ...++|++|
T Consensus 82 d~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~p-iiivgNK~Dl~~~~~~~~~~~~~~~~~---~--~~~~~~e~S 155 (198)
T cd04142 82 RAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPP-IVVVGNKRDQQRHRFAPRHVLSVLVRK---S--WKCGYLECS 155 (198)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCC-EEEEEECccccccccccHHHHHHHHHH---h--cCCcEEEec
Confidence 999999999864332221 2222222 24577 899999999965211111112222111 1 257899999
Q ss_pred cccCCcCCchhhcchHHHHHH
Q 046721 215 GLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 215 Al~g~~y~~~ei~nLlR~I~~ 235 (1068)
|++| ..+.++...+..
T Consensus 156 ak~g-----~~v~~lf~~i~~ 171 (198)
T cd04142 156 AKYN-----WHILLLFKELLI 171 (198)
T ss_pred CCCC-----CCHHHHHHHHHH
Confidence 9966 456666655443
No 180
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.20 E-value=2.6e-10 Score=117.43 Aligned_cols=147 Identities=15% Similarity=0.174 Sum_probs=87.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCC-CCcee-----ccEEEEe---------CCCeeEEEEeCCCC--hhHH-HHHH
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLK-VPEVR-----GPVTVVS---------GKKRRLQFVECPND--INGM-IDCA 138 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~-~~tt~-----~~Iti~~---------~~k~rl~fIDtPGd--l~sm-ld~a 138 (1068)
..|+|+|.+|||||||+++|+....... ..+.. ..+.+.. +....+.|+||||. +..+ ...+
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 84 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFF 84 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHh
Confidence 5789999999999999999987632211 11110 0011111 22467899999994 3343 3456
Q ss_pred HhcCEEEEEEeCCCCCchhH-HHHHHHHHh----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEE
Q 046721 139 KFADLALLLIDASHGFEMET-FEFLNLMQN----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKL 213 (1068)
Q Consensus 139 kvADlVLlVIDas~g~e~~t-~eiL~~L~~----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~I 213 (1068)
+.||++|||+|++..-.-.. ...+..+.. .+.| +|+|.||+|+.............+...+ +.++|.+
T Consensus 85 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~v~~~~~~~~~~~~------~~~~~e~ 157 (180)
T cd04127 85 RDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPD-IVLCGNKADLEDQRQVSEEQAKALADKY------GIPYFET 157 (180)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEeCccchhcCccCHHHHHHHHHHc------CCeEEEE
Confidence 88999999999975322111 123333333 2445 8999999998742111111122222222 4579999
Q ss_pred ecccCCcCCchhhcchHHHHHH
Q 046721 214 SGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 214 SAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
||+++ ..+.++...|..
T Consensus 158 Sak~~-----~~v~~l~~~l~~ 174 (180)
T cd04127 158 SAATG-----TNVEKAVERLLD 174 (180)
T ss_pred eCCCC-----CCHHHHHHHHHH
Confidence 99965 556666655543
No 181
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.20 E-value=2.6e-10 Score=119.51 Aligned_cols=145 Identities=18% Similarity=0.240 Sum_probs=86.7
Q ss_pred EEEECCCCCChhHHHHHHHhc-cccCCCCceeccEE--E-EeCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEEEeCC
Q 046721 79 VVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPVT--V-VSGKKRRLQFVECPND--INGMI-DCAKFADLALLLIDAS 151 (1068)
Q Consensus 79 VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~It--i-~~~~k~rl~fIDtPGd--l~sml-d~akvADlVLlVIDas 151 (1068)
|+|+|.+|||||||+++|+.. +......++...+. + ..+....+.|+||||. +..+. ..++.||++|||+|++
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~ 81 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSIT 81 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECC
Confidence 789999999999999999865 32222222211111 2 2233456899999993 33433 3568999999999997
Q ss_pred CCCchhH-HHHHHHHHh------CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 152 HGFEMET-FEFLNLMQN------HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 152 ~g~e~~t-~eiL~~L~~------~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
...+-.. ..++..+.. .++| +|+|.||+|+.............+...+ +.++|.+||++| .
T Consensus 82 ~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~~~v~~~~~~~~~~~~------~~~~~e~SAk~~-----~ 149 (190)
T cd04144 82 SRSTFERVERFREQIQRVKDESAADVP-IMIVGNKCDKVYEREVSTEEGAALARRL------GCEFIEASAKTN-----V 149 (190)
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCCCC-EEEEEEChhccccCccCHHHHHHHHHHh------CCEEEEecCCCC-----C
Confidence 6432221 123333322 3466 8899999998642111111111222221 457899999965 5
Q ss_pred hhcchHHHHHH
Q 046721 225 DIGNLAEFISV 235 (1068)
Q Consensus 225 ei~nLlR~I~~ 235 (1068)
.+..+...|..
T Consensus 150 ~v~~l~~~l~~ 160 (190)
T cd04144 150 NVERAFYTLVR 160 (190)
T ss_pred CHHHHHHHHHH
Confidence 56666655544
No 182
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.20 E-value=2.5e-10 Score=115.28 Aligned_cols=144 Identities=15% Similarity=0.179 Sum_probs=88.7
Q ss_pred EEEEECCCCCChhHHHHHHHhccc-cCCCCceeccE---EEE-eCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEEe
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYT-KLKVPEVRGPV---TVV-SGKKRRLQFVECPND--ING-MIDCAKFADLALLLID 149 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~-~~~~~tt~~~I---ti~-~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVID 149 (1068)
.|+|+|++|||||||+++|++... .....+....+ .+. .+...++.|+||||. +.. ....++.+|++|+|+|
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d 81 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYD 81 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEE
Confidence 589999999999999999987632 22222211111 111 223467899999993 444 3445689999999999
Q ss_pred CCCCCchhH-HHHHHHHH---hCCCCcEEEEEeCCCcCCcHHH-HHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 150 ASHGFEMET-FEFLNLMQ---NHGLPNVMGVLTHLDKFTDKKK-LRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 150 as~g~e~~t-~eiL~~L~---~~GlP~vIvVLNKiDlvk~~k~-l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
++.+..-.. ..++..++ ..++| +++|+||+|+...... ........+ . .+..++.+||+++ .
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~~~~~~~~~~-~------~~~~~~~~Sa~~~-----~ 148 (161)
T cd04113 82 ITNRTSFEALPTWLSDARALASPNIV-VILVGNKSDLADQREVTFLEASRFAQ-E------NGLLFLETSALTG-----E 148 (161)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcchhccCCHHHHHHHHH-H------cCCEEEEEECCCC-----C
Confidence 987543222 13333332 24677 8999999998742111 112222211 1 1367999999854 5
Q ss_pred hhcchHHHHH
Q 046721 225 DIGNLAEFIS 234 (1068)
Q Consensus 225 ei~nLlR~I~ 234 (1068)
.+..+...++
T Consensus 149 ~i~~~~~~~~ 158 (161)
T cd04113 149 NVEEAFLKCA 158 (161)
T ss_pred CHHHHHHHHH
Confidence 6666665554
No 183
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.20 E-value=2.6e-10 Score=116.58 Aligned_cols=147 Identities=17% Similarity=0.248 Sum_probs=87.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccC-CCCceeccEE--EE-eCCCeeEEEEeCCC--ChhHHHH-HHHhcCEEEEEEe
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVRGPVT--VV-SGKKRRLQFVECPN--DINGMID-CAKFADLALLLID 149 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~~~It--i~-~~~k~rl~fIDtPG--dl~smld-~akvADlVLlVID 149 (1068)
..|+++|.+|+|||||+++|++..... ...++...+. +. .+....+.++|||| .+..+.+ .++.+|.+|||+|
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~ 81 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS 81 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence 468999999999999999999763222 2222221111 11 22346788999999 4555544 3588999999999
Q ss_pred CCCCCchhH-----HHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 150 ASHGFEMET-----FEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 150 as~g~e~~t-----~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
.+..-.-+. ..+.......++| +|+|.||+|+.............+... ....++|.+||+++ .
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~SA~~~-----~ 150 (168)
T cd04177 82 VTSEASLNELGELREQVLRIKDSDNVP-MVLVGNKADLEDDRQVSREDGVSLSQQ-----WGNVPFYETSARKR-----T 150 (168)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCC-EEEEEEChhccccCccCHHHHHHHHHH-----cCCceEEEeeCCCC-----C
Confidence 875322111 1222222234678 788999999875321111111112222 12367999999965 4
Q ss_pred hhcchHHHHH
Q 046721 225 DIGNLAEFIS 234 (1068)
Q Consensus 225 ei~nLlR~I~ 234 (1068)
++..+...|+
T Consensus 151 ~i~~~f~~i~ 160 (168)
T cd04177 151 NVDEVFIDLV 160 (168)
T ss_pred CHHHHHHHHH
Confidence 4555554443
No 184
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.19 E-value=1.2e-10 Score=114.24 Aligned_cols=134 Identities=22% Similarity=0.310 Sum_probs=76.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcccc--CCCCceeccEE-EEeCCC--eeEEEEeCCC--ChhHHHHH-HHhc------
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTK--LKVPEVRGPVT-VVSGKK--RRLQFVECPN--DINGMIDC-AKFA------ 141 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~--~~~~tt~~~It-i~~~~k--~rl~fIDtPG--dl~smld~-akvA------ 141 (1068)
+..|+++|++|+|||||+++|++.... ....++...+. .+.... ..+.++|||| .+..+... .+.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 357999999999999999999987521 11122222222 122233 6789999999 33333322 2334
Q ss_pred -CEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 142 -DLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 142 -DlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
|++++|+|+..+.......++..+. .+.| +++|+||+|+.... ....... .+.. .....++++||..+
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p-~ivv~nK~D~~~~~-~~~~~~~----~~~~--~~~~~~~~~sa~~~ 149 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVP-IILVGNKIDLRDAK-LKTHVAF----LFAK--LNGEPIIPLSAETG 149 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCc-EEEEEEcccCCcch-hhHHHHH----HHhh--ccCCceEEeecCCC
Confidence 4444444444333233334444443 2777 89999999997632 1111111 1211 13456999999865
No 185
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.19 E-value=4.1e-10 Score=119.18 Aligned_cols=139 Identities=15% Similarity=0.152 Sum_probs=88.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccC--C-----CCceeccEEEEeCCCeeEEEEeCCCC------hhHHHHH--HHh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKL--K-----VPEVRGPVTVVSGKKRRLQFVECPND------INGMIDC--AKF 140 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~--~-----~~tt~~~Iti~~~~k~rl~fIDtPGd------l~smld~--akv 140 (1068)
|..|+|+|.+|+|||||+|+|++..... . ..++.....+.......++++||||- ....+.. +..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 5689999999999999999999852111 0 01111111111112347899999992 1223333 356
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHH--------HHHHHHHHHHH----hcccccCCC
Q 046721 141 ADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKK--------LRKTKQHLKHR----FGTELYHGA 208 (1068)
Q Consensus 141 ADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~--------l~~vkk~Lk~~----~~~e~~~~~ 208 (1068)
+|++|+|.| ..+......++..+...|.| +++|+||+|+..+... ..++++.++++ +........
T Consensus 81 ~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~-~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p 157 (197)
T cd04104 81 YDFFIIISS--TRFSSNDVKLAKAIQCMGKK-FYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEP 157 (197)
T ss_pred cCEEEEEeC--CCCCHHHHHHHHHHHHhCCC-EEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 798888854 45777777888888888887 8999999999642221 22334444433 333334567
Q ss_pred eEEEEeccc
Q 046721 209 KLFKLSGLI 217 (1068)
Q Consensus 209 kVf~ISAl~ 217 (1068)
+||.+|+..
T Consensus 158 ~v~~vS~~~ 166 (197)
T cd04104 158 PVFLVSNFD 166 (197)
T ss_pred CEEEEeCCC
Confidence 899999863
No 186
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.19 E-value=2.7e-10 Score=114.03 Aligned_cols=144 Identities=18% Similarity=0.217 Sum_probs=86.7
Q ss_pred EEEEECCCCCChhHHHHHHHhcccc-CCCCceeccEE---EE-eCCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEe
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTK-LKVPEVRGPVT---VV-SGKKRRLQFVECPND--INGMID-CAKFADLALLLID 149 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~-~~~~tt~~~It---i~-~~~k~rl~fIDtPGd--l~smld-~akvADlVLlVID 149 (1068)
.|+|+|++|+|||||+++|++.... ....++...+. +. .+....+.++||||. +..+.. .++.+|++|+|+|
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYD 81 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEE
Confidence 5899999999999999999986432 22222222221 11 123457899999994 334333 3578999999999
Q ss_pred CCCCCchhHH-HHHHHHHh---CCCCcEEEEEeCCCcCCcHHH-HHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 150 ASHGFEMETF-EFLNLMQN---HGLPNVMGVLTHLDKFTDKKK-LRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 150 as~g~e~~t~-eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~-l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
++.+-.-+.. .++..+.. .++| +|+|+||+|+...... .....+.. .. .+.++|++||+++ .
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~~~~~~~~~~~~-~~------~~~~~~~~s~~~~-----~ 148 (162)
T cd04123 82 ITDADSFQKVKKWIKELKQMRGNNIS-LVIVGNKIDLERQRVVSKSEAEEYA-KS------VGAKHFETSAKTG-----K 148 (162)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCCCHHHHHHHH-HH------cCCEEEEEeCCCC-----C
Confidence 9765332222 22222222 2566 8999999998742111 11122211 11 1567899999865 5
Q ss_pred hhcchHHHHH
Q 046721 225 DIGNLAEFIS 234 (1068)
Q Consensus 225 ei~nLlR~I~ 234 (1068)
++..+...|.
T Consensus 149 gi~~~~~~l~ 158 (162)
T cd04123 149 GIEELFLSLA 158 (162)
T ss_pred CHHHHHHHHH
Confidence 5666665553
No 187
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.19 E-value=2.1e-10 Score=116.55 Aligned_cols=146 Identities=16% Similarity=0.258 Sum_probs=86.0
Q ss_pred EEEECCCCCChhHHHHHHHhcc-ccCCCCceecc--EEE-EeCCCeeEEEEeCCCCh---h-HHHHHHHhcCEEEEEEeC
Q 046721 79 VVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGP--VTV-VSGKKRRLQFVECPNDI---N-GMIDCAKFADLALLLIDA 150 (1068)
Q Consensus 79 VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~--Iti-~~~~k~rl~fIDtPGdl---~-smld~akvADlVLlVIDa 150 (1068)
|+|||.+|+|||||+++++... ......++... ..+ +.+....+.|+||||.. . .+...++.||++|+|+|+
T Consensus 2 i~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~ 81 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSI 81 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEEC
Confidence 7999999999999999987642 22222221111 112 22334578899999943 2 355677899999999999
Q ss_pred CCCCchhH-HHHHHHHHh-----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 151 SHGFEMET-FEFLNLMQN-----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 151 s~g~e~~t-~eiL~~L~~-----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
+....-+. ..++..+.. .++| +|+|.||+|+.....-.......+...+ +.++|.+||+++ ..
T Consensus 82 ~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~~~------~~~~~e~Sa~~~----~~ 150 (165)
T cd04146 82 TDRSSFDEISQLKQLIREIKKRDREIP-VILVGNKADLLHYRQVSTEEGEKLASEL------GCLFFEVSAAED----YD 150 (165)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHhCccCHHHHHHHHHHc------CCEEEEeCCCCC----ch
Confidence 86532221 122333322 3677 8999999998532110011111121221 467899999864 13
Q ss_pred hhcchHHHHHH
Q 046721 225 DIGNLAEFISV 235 (1068)
Q Consensus 225 ei~nLlR~I~~ 235 (1068)
++..+...|+.
T Consensus 151 ~v~~~f~~l~~ 161 (165)
T cd04146 151 GVHSVFHELCR 161 (165)
T ss_pred hHHHHHHHHHH
Confidence 56666655543
No 188
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.19 E-value=3.8e-10 Score=114.91 Aligned_cols=146 Identities=15% Similarity=0.162 Sum_probs=88.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE---E-EeCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT---V-VSGKKRRLQFVECPND--ING-MIDCAKFADLALLLI 148 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It---i-~~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVI 148 (1068)
..|+|+|.+|+|||||+++|+... ......++...+. + ..+...++.++||||. +.. ....++.||++|||+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 82 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 82 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 468999999999999999998762 2222222221121 1 1223557899999994 334 344578999999999
Q ss_pred eCCCCCchhHH-HHHHHHHh---CCCCcEEEEEeCCCcCCcHHH-HHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 149 DASHGFEMETF-EFLNLMQN---HGLPNVMGVLTHLDKFTDKKK-LRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 149 Das~g~e~~t~-eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~-l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
|++..-.-+.. .++..+.. .+.| +++|.||+|+...... .....+ +... ...++|.+||++|
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~~~~~~~~~~-~~~~------~~~~~~e~Sa~~~----- 149 (166)
T cd04122 83 DITRRSTYNHLSSWLTDARNLTNPNTV-IFLIGNKADLEAQRDVTYEEAKQ-FADE------NGLLFLECSAKTG----- 149 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCcCHHHHHH-HHHH------cCCEEEEEECCCC-----
Confidence 99864321111 23333322 2455 8999999999753211 112222 2111 1468999999965
Q ss_pred hhhcchHHHHHH
Q 046721 224 KDIGNLAEFISV 235 (1068)
Q Consensus 224 ~ei~nLlR~I~~ 235 (1068)
.++.++...++.
T Consensus 150 ~~i~e~f~~l~~ 161 (166)
T cd04122 150 ENVEDAFLETAK 161 (166)
T ss_pred CCHHHHHHHHHH
Confidence 556665555443
No 189
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.19 E-value=2.8e-10 Score=113.77 Aligned_cols=144 Identities=15% Similarity=0.181 Sum_probs=87.0
Q ss_pred EEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE-EEe-C-CCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEEeC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT-VVS-G-KKRRLQFVECPND--ING-MIDCAKFADLALLLIDA 150 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It-i~~-~-~k~rl~fIDtPGd--l~s-mld~akvADlVLlVIDa 150 (1068)
.|+|+|++|+|||||+++|++.. ......++..... ... . ...++.++||||. +.. ....++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 37999999999999999999763 2222222222222 122 2 2467899999993 344 33456889999999998
Q ss_pred CCCCchhH-HHHHHHH-Hh---CCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 151 SHGFEMET-FEFLNLM-QN---HGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 151 s~g~e~~t-~eiL~~L-~~---~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
+....... ..++..+ .. .+.| +++|+||+|+..... ....+....+.. +.+++.+||+.+ .
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~S~~~~-----~ 147 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIP-IVLVGNKCDLENERQVSKEEGKALAKEW-------GCPFIETSAKDN-----I 147 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCcccccceecHHHHHHHHHHc-------CCcEEEeccCCC-----C
Confidence 75432211 1222222 22 3566 899999999975211 112222222211 367999999854 5
Q ss_pred hhcchHHHHH
Q 046721 225 DIGNLAEFIS 234 (1068)
Q Consensus 225 ei~nLlR~I~ 234 (1068)
++..+...|.
T Consensus 148 ~i~~l~~~l~ 157 (160)
T cd00876 148 NIDEVFKLLV 157 (160)
T ss_pred CHHHHHHHHH
Confidence 6666665553
No 190
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.18 E-value=4.6e-10 Score=118.67 Aligned_cols=148 Identities=17% Similarity=0.139 Sum_probs=88.3
Q ss_pred EEEEECCCCCChhHHHHHHHhccccCCCCceec-c--EE-EEe--CCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEEE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRG-P--VT-VVS--GKKRRLQFVECPND--INGMI-DCAKFADLALLLI 148 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~-~--It-i~~--~~k~rl~fIDtPGd--l~sml-d~akvADlVLlVI 148 (1068)
.|+|||.+|+|||||+++|++.........+.+ . +. +.. +....+.|+||||. +..+. ..++.||++|||+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 81 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVF 81 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEE
Confidence 589999999999999999997632221111211 1 11 222 34567899999994 44443 4568999999999
Q ss_pred eCCCCCchhHH-HHHHHHH-------hCCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCC
Q 046721 149 DASHGFEMETF-EFLNLMQ-------NHGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQG 219 (1068)
Q Consensus 149 Das~g~e~~t~-eiL~~L~-------~~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~ 219 (1068)
|++....-+.. ..+..+. ..++| +|+|.||+|+..... ....+.+.. ... ....+|.+||++|
T Consensus 82 D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~~~~~-~~~-----~~~~~~e~Sak~~- 153 (201)
T cd04107 82 DVTRPSTFEAVLKWKADLDSKVTLPNGEPIP-CLLLANKCDLKKRLAKDGEQMDQFC-KEN-----GFIGWFETSAKEG- 153 (201)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhcccCCCCCc-EEEEEECCCcccccccCHHHHHHHH-HHc-----CCceEEEEeCCCC-
Confidence 99754221111 1222222 14567 899999999963111 112222211 111 2357899999965
Q ss_pred cCCchhhcchHHHHHHhh
Q 046721 220 KYTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 220 ~y~~~ei~nLlR~I~~~k 237 (1068)
..+..+...|....
T Consensus 154 ----~~v~e~f~~l~~~l 167 (201)
T cd04107 154 ----INIEEAMRFLVKNI 167 (201)
T ss_pred ----CCHHHHHHHHHHHH
Confidence 45666665555443
No 191
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=9.4e-11 Score=135.16 Aligned_cols=169 Identities=17% Similarity=0.166 Sum_probs=112.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc---cccCCCCceeccEE-EEeCCCeeEEEEeCCCC------------hhHHHHHHH
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH---YTKLKVPEVRGPVT-VVSGKKRRLQFVECPND------------INGMIDCAK 139 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~---~~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd------------l~smld~ak 139 (1068)
+..|||+|+||||||||+|+|+.. .++..+.||+..|. .+.-.+..+.++||.|- +...-..+.
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~ 347 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIE 347 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHh
Confidence 578999999999999999999997 47788888988777 45567889999999992 112344578
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhCCC-----------CcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCC
Q 046721 140 FADLALLLIDASHGFEMETFEFLNLMQNHGL-----------PNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGA 208 (1068)
Q Consensus 140 vADlVLlVIDas~g~e~~t~eiL~~L~~~Gl-----------P~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~ 208 (1068)
.||+|+||+||.+....+...+.+.|...|. .++|+|+||+|+..+-......... +...+..+..
T Consensus 348 ~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~---~~~~~~~~~~ 424 (531)
T KOG1191|consen 348 RADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV---YPSAEGRSVF 424 (531)
T ss_pred hcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCcee---ccccccCccc
Confidence 9999999999988777777777777766432 3477889999987642111110000 0111112233
Q ss_pred eE-EEEecccCCcCCchhhcchHHHHHHhhcccccccccCCeEEE
Q 046721 209 KL-FKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWRTSHPYILV 252 (1068)
Q Consensus 209 kV-f~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR~~rPylLa 252 (1068)
++ ..+|+++ ++.+..|...|.....+...-...+|+++.
T Consensus 425 ~i~~~vs~~t-----keg~~~L~~all~~~~~~~~~~~s~~~t~~ 464 (531)
T KOG1191|consen 425 PIVVEVSCTT-----KEGCERLSTALLNIVERLVVSPHSAPPTLS 464 (531)
T ss_pred ceEEEeeech-----hhhHHHHHHHHHHHHHHhhcCCCCCchhhc
Confidence 33 3477774 467777775555554443333334455544
No 192
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.17 E-value=2.8e-10 Score=115.57 Aligned_cols=148 Identities=20% Similarity=0.196 Sum_probs=87.5
Q ss_pred EEEEECCCCCChhHHHHHHHhccc-cCCCCceeccE--EE-EeCCCeeEEEEeCCCCh--hHHH-HHHHhcCEEEEEEeC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYT-KLKVPEVRGPV--TV-VSGKKRRLQFVECPNDI--NGMI-DCAKFADLALLLIDA 150 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~-~~~~~tt~~~I--ti-~~~~k~rl~fIDtPGdl--~sml-d~akvADlVLlVIDa 150 (1068)
.|+|+|.+|+|||||+++|++... .....+..... .+ ..+....+.|+||||.. ..+. ..++.||++|+|+|+
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 81 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSV 81 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEEC
Confidence 689999999999999999998742 12222211111 11 22335679999999942 2322 234789999999999
Q ss_pred CCCCch--hHHHHHHHHHhC--CCCcEEEEEeCCCcCCcHHHHHH-------H-HHHHHHHhcccccCCCeEEEEecccC
Q 046721 151 SHGFEM--ETFEFLNLMQNH--GLPNVMGVLTHLDKFTDKKKLRK-------T-KQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 151 s~g~e~--~t~eiL~~L~~~--GlP~vIvVLNKiDlvk~~k~l~~-------v-kk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
+....- ....++..+... ++| +++|+||+|+......... + ........ . ......+|.+||+++
T Consensus 82 ~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~-~-~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 82 DSPSSFENVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLA-K-EIGAIGYMECSALTQ 158 (171)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHH-H-HhCCeEEEEeecCCC
Confidence 753322 122344444433 467 8999999999864322110 0 11111111 1 113338999999865
Q ss_pred CcCCchhhcchHHHH
Q 046721 219 GKYTKKDIGNLAEFI 233 (1068)
Q Consensus 219 ~~y~~~ei~nLlR~I 233 (1068)
.++.++...|
T Consensus 159 -----~gi~~l~~~i 168 (171)
T cd00157 159 -----EGVKEVFEEA 168 (171)
T ss_pred -----CCHHHHHHHH
Confidence 5566665544
No 193
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.16 E-value=4.5e-10 Score=120.22 Aligned_cols=148 Identities=17% Similarity=0.137 Sum_probs=87.9
Q ss_pred EEEEECCCCCChhHHHHHHHhccc-cCCCCcee-ccEE--EEe--CCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYT-KLKVPEVR-GPVT--VVS--GKKRRLQFVECPND--INGMID-CAKFADLALLLI 148 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~-~~~~~tt~-~~It--i~~--~~k~rl~fIDtPGd--l~smld-~akvADlVLlVI 148 (1068)
.|+|||.+|||||||+++|++... .....|.. .... +.. .....+.|+||||. +..++. .++.||++|||+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~ 81 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVY 81 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEE
Confidence 589999999999999999997632 22222221 1111 221 23568899999994 333443 468999999999
Q ss_pred eCCCCCchhH-HHHHHHHHhC-----CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 149 DASHGFEMET-FEFLNLMQNH-----GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 149 Das~g~e~~t-~eiL~~L~~~-----GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
|++..-..+. ...+..+... ..+.+|+|.||+|+.............+...+ +.++|.+||++|
T Consensus 82 D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~------~~~~~~iSAktg---- 151 (215)
T cd04109 82 DVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQAN------GMESCLVSAKTG---- 151 (215)
T ss_pred ECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHc------CCEEEEEECCCC----
Confidence 9985422111 1233333321 12348899999999742211111112222221 467899999965
Q ss_pred chhhcchHHHHHHh
Q 046721 223 KKDIGNLAEFISVM 236 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~ 236 (1068)
..+..+...|...
T Consensus 152 -~gv~~lf~~l~~~ 164 (215)
T cd04109 152 -DRVNLLFQQLAAE 164 (215)
T ss_pred -CCHHHHHHHHHHH
Confidence 5666666666544
No 194
>PLN03118 Rab family protein; Provisional
Probab=99.16 E-value=6.9e-10 Score=118.32 Aligned_cols=150 Identities=15% Similarity=0.206 Sum_probs=90.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccE---EEEe-CCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPV---TVVS-GKKRRLQFVECPND--INGMI-DCAKFADLALLL 147 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~I---ti~~-~~k~rl~fIDtPGd--l~sml-d~akvADlVLlV 147 (1068)
....|+|||.+|||||||+++|++........+....+ ++.. +...++.|+||||. +..+. ..++.+|++|||
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv 92 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILV 92 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 35789999999999999999999864322222211111 1222 23568899999993 44544 346889999999
Q ss_pred EeCCCCCchhHH-H-HHHHHHh----CCCCcEEEEEeCCCcCCcHHH-HHHHHHHHHHHhcccccCCCeEEEEecccCCc
Q 046721 148 IDASHGFEMETF-E-FLNLMQN----HGLPNVMGVLTHLDKFTDKKK-LRKTKQHLKHRFGTELYHGAKLFKLSGLIQGK 220 (1068)
Q Consensus 148 IDas~g~e~~t~-e-iL~~L~~----~GlP~vIvVLNKiDlvk~~k~-l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~ 220 (1068)
+|++....-+.. . ....+.. .++| +|+|+||+|+...... ......... . .+..+|.+||+++
T Consensus 93 ~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~~~~i~~~~~~~~~~-~------~~~~~~e~SAk~~-- 162 (211)
T PLN03118 93 YDVTRRETFTNLSDVWGKEVELYSTNQDCV-KMLVGNKVDRESERDVSREEGMALAK-E------HGCLFLECSAKTR-- 162 (211)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccCccCHHHHHHHHH-H------cCCEEEEEeCCCC--
Confidence 999864322221 1 1122221 3566 7889999998642111 111111111 1 1457899999865
Q ss_pred CCchhhcchHHHHHHhh
Q 046721 221 YTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 221 y~~~ei~nLlR~I~~~k 237 (1068)
..+..+...|....
T Consensus 163 ---~~v~~l~~~l~~~~ 176 (211)
T PLN03118 163 ---ENVEQCFEELALKI 176 (211)
T ss_pred ---CCHHHHHHHHHHHH
Confidence 56666776665444
No 195
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.16 E-value=5.2e-10 Score=115.57 Aligned_cols=146 Identities=16% Similarity=0.283 Sum_probs=88.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE--EE-eCCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEe
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT--VV-SGKKRRLQFVECPND--INGMID-CAKFADLALLLID 149 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It--i~-~~~k~rl~fIDtPGd--l~smld-~akvADlVLlVID 149 (1068)
..|+|+|.+|||||||+++++... ......+....+. +. .+....+.|+||||. +..+.. .+..||++|+|+|
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d 82 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYS 82 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEE
Confidence 579999999999999999998653 2222222221111 22 233567899999994 445443 4688999999999
Q ss_pred CCCCCchhHH-HHHHHHH----hCCCCcEEEEEeCCCcCCcHHH-HHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 150 ASHGFEMETF-EFLNLMQ----NHGLPNVMGVLTHLDKFTDKKK-LRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 150 as~g~e~~t~-eiL~~L~----~~GlP~vIvVLNKiDlvk~~k~-l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
++....-+.. .++..+. ..++| +|+|.||+|+...... .... ..+.+.. +.++|.+||++|
T Consensus 83 ~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~~~~~v~~~~~-~~~a~~~------~~~~~e~Sa~~~----- 149 (172)
T cd04141 83 VTDRHSFQEASEFKKLITRVRLTEDIP-LVLVGNKVDLESQRQVTTEEG-RNLAREF------NCPFFETSAALR----- 149 (172)
T ss_pred CCchhHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhhhhcCccCHHHH-HHHHHHh------CCEEEEEecCCC-----
Confidence 9865432221 2222222 23677 8999999998642110 1111 1121111 568999999965
Q ss_pred hhhcchHHHHHH
Q 046721 224 KDIGNLAEFISV 235 (1068)
Q Consensus 224 ~ei~nLlR~I~~ 235 (1068)
..+.++...|+.
T Consensus 150 ~~v~~~f~~l~~ 161 (172)
T cd04141 150 HYIDDAFHGLVR 161 (172)
T ss_pred CCHHHHHHHHHH
Confidence 455555555543
No 196
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.16 E-value=4.6e-10 Score=117.18 Aligned_cols=149 Identities=9% Similarity=0.084 Sum_probs=90.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc-cccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEeCC
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPVTVVSGKKRRLQFVECPND--INGMID-CAKFADLALLLIDAS 151 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~smld-~akvADlVLlVIDas 151 (1068)
...|+++|++++|||||++++... +.. ..+|+...+..+......+.++||||. +..+.. .+..||++|||+|++
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t 95 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSN 95 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCC
Confidence 367999999999999999999643 332 223322222223345678999999994 445444 468999999999997
Q ss_pred CC--CchhHHHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccC--CCeEEEEecccCCcCCch
Q 046721 152 HG--FEMETFEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYH--GAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 152 ~g--~e~~t~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~--~~kVf~ISAl~g~~y~~~ 224 (1068)
.. ++....++...+.. ...| +|+|.||.|+.... ....+...+. -.... ...++.+||++| .
T Consensus 96 ~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~i~~~l~----~~~~~~~~~~~~~~Sa~tg-----~ 164 (182)
T PTZ00133 96 DRERIGDAREELERMLSEDELRDAV-LLVFANKQDLPNAM-STTEVTEKLG----LHSVRQRNWYIQGCCATTA-----Q 164 (182)
T ss_pred CHHHHHHHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCCC-CHHHHHHHhC----CCcccCCcEEEEeeeCCCC-----C
Confidence 53 22222234444443 2345 89999999986421 1112222221 11111 124667899865 6
Q ss_pred hhcchHHHHHHh
Q 046721 225 DIGNLAEFISVM 236 (1068)
Q Consensus 225 ei~nLlR~I~~~ 236 (1068)
++..+...|...
T Consensus 165 gv~e~~~~l~~~ 176 (182)
T PTZ00133 165 GLYEGLDWLSAN 176 (182)
T ss_pred CHHHHHHHHHHH
Confidence 677777766543
No 197
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.15 E-value=1.6e-10 Score=138.58 Aligned_cols=149 Identities=17% Similarity=0.229 Sum_probs=101.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCCCeeEEEEeCCC--ChhH-------HHHHH--HhcC
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGKKRRLQFVECPN--DING-------MIDCA--KFAD 142 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~k~rl~fIDtPG--dl~s-------mld~a--kvAD 142 (1068)
..||++|.||+|||||+|+|+|.. ++..+..|-..-. ....+.+++.++|+|| ++.. ..|.+ ..+|
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D 83 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPD 83 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCC
Confidence 359999999999999999999974 3333222211111 2334567899999999 3331 23333 4579
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 143 LALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 143 lVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
+||.|+||++ ++. ...+.-.|.+.|+| +|+++|.+|..+. .-++-..+.|.+.+ +.+|+++||.+|
T Consensus 84 ~ivnVvDAtn-LeR-nLyltlQLlE~g~p-~ilaLNm~D~A~~-~Gi~ID~~~L~~~L------GvPVv~tvA~~g---- 149 (653)
T COG0370 84 LIVNVVDATN-LER-NLYLTLQLLELGIP-MILALNMIDEAKK-RGIRIDIEKLSKLL------GVPVVPTVAKRG---- 149 (653)
T ss_pred EEEEEcccch-HHH-HHHHHHHHHHcCCC-eEEEeccHhhHHh-cCCcccHHHHHHHh------CCCEEEEEeecC----
Confidence 9999999974 222 22344445679999 8999999998752 23344455566666 999999999965
Q ss_pred chhhcchHHHHHHhhccc
Q 046721 223 KKDIGNLAEFISVMKFHS 240 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~k~r~ 240 (1068)
.++..+++.|.......
T Consensus 150 -~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 150 -EGLEELKRAIIELAESK 166 (653)
T ss_pred -CCHHHHHHHHHHhcccc
Confidence 66778887776555443
No 198
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.15 E-value=8.2e-10 Score=112.64 Aligned_cols=147 Identities=14% Similarity=0.136 Sum_probs=86.9
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccC-CCCceeccE---EE-EeCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVRGPV---TV-VSGKKRRLQFVECPND--INGMI-DCAKFADLALL 146 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~~~I---ti-~~~~k~rl~fIDtPGd--l~sml-d~akvADlVLl 146 (1068)
....|+|+|.+|+|||||+++|++..... ...+..... .+ ..+....+.|+||||. +..+. ..++.||++|+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 34789999999999999999998764222 122211111 11 2234567889999993 33433 35688999999
Q ss_pred EEeCCCCCchhH-----HHHHHHHH---hCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 147 LIDASHGFEMET-----FEFLNLMQ---NHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 147 VIDas~g~e~~t-----~eiL~~L~---~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
|+|.+..-.-+. .+++..+. ..++| +|+|+||+|+.+.........+.++ . .....+|.+||++|
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~-~-----~~~~~~~e~Sa~~~ 156 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDIPERQVSTEEAQAWCR-E-----NGDYPYFETSAKDA 156 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCc-EEEEEECccccccccCHHHHHHHHH-H-----CCCCeEEEEECCCC
Confidence 999875422111 12222221 13567 8899999998632111122222221 1 12357899999865
Q ss_pred CcCCchhhcchHHHH
Q 046721 219 GKYTKKDIGNLAEFI 233 (1068)
Q Consensus 219 ~~y~~~ei~nLlR~I 233 (1068)
.++.++...+
T Consensus 157 -----~~v~~~~~~~ 166 (170)
T cd04116 157 -----TNVAAAFEEA 166 (170)
T ss_pred -----CCHHHHHHHH
Confidence 4555555444
No 199
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.15 E-value=4.4e-10 Score=117.34 Aligned_cols=149 Identities=10% Similarity=0.085 Sum_probs=90.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhc-cccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEeCCC
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPVTVVSGKKRRLQFVECPND--INGMID-CAKFADLALLLIDASH 152 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~smld-~akvADlVLlVIDas~ 152 (1068)
..|+++|.+++|||||+++|... +.. ..+|+.-.++.+......+.++||||. +..+.. .++.||++|||+|++.
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~ 96 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 96 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCc
Confidence 57999999999999999999753 332 222221112223345678999999994 445544 4689999999999985
Q ss_pred CCch--hHHHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccc-cCCCeEEEEecccCCcCCchhh
Q 046721 153 GFEM--ETFEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTEL-YHGAKLFKLSGLIQGKYTKKDI 226 (1068)
Q Consensus 153 g~e~--~t~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~-~~~~kVf~ISAl~g~~y~~~ei 226 (1068)
.-.. ...++-..+.. .++| +++|+||+|+.... ...++.+.+. + ... .....++++||++| +++
T Consensus 97 ~~s~~~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl~~~~-~~~~~~~~l~--l-~~~~~~~~~~~~~Sa~~g-----~gv 166 (181)
T PLN00223 97 RDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAM-NAAEITDKLG--L-HSLRQRHWYIQSTCATSG-----EGL 166 (181)
T ss_pred HHHHHHHHHHHHHHhcCHhhCCCC-EEEEEECCCCCCCC-CHHHHHHHhC--c-cccCCCceEEEeccCCCC-----CCH
Confidence 4221 11123333322 2556 89999999986421 2222222221 0 000 01124567899965 667
Q ss_pred cchHHHHHHh
Q 046721 227 GNLAEFISVM 236 (1068)
Q Consensus 227 ~nLlR~I~~~ 236 (1068)
.++.+.|...
T Consensus 167 ~e~~~~l~~~ 176 (181)
T PLN00223 167 YEGLDWLSNN 176 (181)
T ss_pred HHHHHHHHHH
Confidence 7777777544
No 200
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.15 E-value=7.5e-10 Score=117.06 Aligned_cols=149 Identities=15% Similarity=0.178 Sum_probs=90.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcccc-CCCCceeccE---EEEe-CCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTK-LKVPEVRGPV---TVVS-GKKRRLQFVECPND--INGM-IDCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~-~~~~tt~~~I---ti~~-~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlV 147 (1068)
...|+|||.+|||||||+++|++.... ....+....+ ++.. +....+.|+||||. +..+ ...+..||++|||
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv 85 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 85 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence 468999999999999999999876322 2222221111 1222 33567899999994 3443 3356789999999
Q ss_pred EeCCCCCchhH-HHHHHHHHhC--CCCcEEEEEeCCCcCCcHHH-HHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 148 IDASHGFEMET-FEFLNLMQNH--GLPNVMGVLTHLDKFTDKKK-LRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 148 IDas~g~e~~t-~eiL~~L~~~--GlP~vIvVLNKiDlvk~~k~-l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
+|++..-.-+. ...+..+... .+| +|+|.||+|+...... ...... +... .+.++|.+||++|
T Consensus 86 ~D~~~~~s~~~~~~~~~~i~~~~~~~p-iivVgNK~Dl~~~~~~~~~~~~~-~~~~------~~~~~~e~Sa~~~----- 152 (199)
T cd04110 86 YDVTNGESFVNVKRWLQEIEQNCDDVC-KVLVGNKNDDPERKVVETEDAYK-FAGQ------MGISLFETSAKEN----- 152 (199)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccccCHHHHHH-HHHH------cCCEEEEEECCCC-----
Confidence 99986432221 1233433332 355 8899999998752111 111111 1111 1467999999965
Q ss_pred hhhcchHHHHHHhh
Q 046721 224 KDIGNLAEFISVMK 237 (1068)
Q Consensus 224 ~ei~nLlR~I~~~k 237 (1068)
.++..+...|....
T Consensus 153 ~gi~~lf~~l~~~~ 166 (199)
T cd04110 153 INVEEMFNCITELV 166 (199)
T ss_pred cCHHHHHHHHHHHH
Confidence 55666665554433
No 201
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.15 E-value=6e-10 Score=117.60 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=88.3
Q ss_pred EEEECCCCCChhHHHHHHHhccccC-CCCceeccEE--EE-eCCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEeCC
Q 046721 79 VVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVRGPVT--VV-SGKKRRLQFVECPND--INGMID-CAKFADLALLLIDAS 151 (1068)
Q Consensus 79 VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~~~It--i~-~~~k~rl~fIDtPGd--l~smld-~akvADlVLlVIDas 151 (1068)
|+|+|.+|+|||||+++|++..... ...++..... +. .+....+.|+||||. +..+.. .+..||++|||+|++
T Consensus 2 v~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~ 81 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVD 81 (198)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECC
Confidence 7999999999999999998863222 1222211111 11 222357899999994 333433 468899999999998
Q ss_pred CCCchhHH-H----HHHHHHhCCCCcEEEEEeCCCcCCcHHHH--HHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 152 HGFEMETF-E----FLNLMQNHGLPNVMGVLTHLDKFTDKKKL--RKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 152 ~g~e~~t~-e----iL~~L~~~GlP~vIvVLNKiDlvk~~k~l--~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
.+...+.. . ++......++| +|+|+||+|+......+ ....+. +. ...+..++.+||++| .
T Consensus 82 ~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~~v~~~~~~~~----~~--~~~~~~~~~~Sa~~g-----~ 149 (198)
T cd04147 82 DPESFEEVERLREEILEVKEDKFVP-IVVVGNKADSLEEERQVPAKDALST----VE--LDWNCGFVETSAKDN-----E 149 (198)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEccccccccccccHHHHHHH----HH--hhcCCcEEEecCCCC-----C
Confidence 64322211 1 22222224677 89999999987521111 111111 11 012457899999865 6
Q ss_pred hhcchHHHHHHhh
Q 046721 225 DIGNLAEFISVMK 237 (1068)
Q Consensus 225 ei~nLlR~I~~~k 237 (1068)
++..+...|....
T Consensus 150 gv~~l~~~l~~~~ 162 (198)
T cd04147 150 NVLEVFKELLRQA 162 (198)
T ss_pred CHHHHHHHHHHHh
Confidence 6777776665433
No 202
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.14 E-value=7.3e-10 Score=116.97 Aligned_cols=157 Identities=17% Similarity=0.227 Sum_probs=94.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccC----CCCceeccEE-EEeCCCeeEEEEeCCC--Ch-------h-HHHHHH---
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKL----KVPEVRGPVT-VVSGKKRRLQFVECPN--DI-------N-GMIDCA--- 138 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~----~~~tt~~~It-i~~~~k~rl~fIDtPG--dl-------~-smld~a--- 138 (1068)
+.|++||.+|+|||||+|+|++..... ....|..... .....++++++||||| +. . .+...+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 369999999999999999999974321 1122222212 1223567999999999 21 1 122222
Q ss_pred -HhcCEEEEEEeCCCCCchhHHHHHHHHHhC-C---CCcEEEEEeCCCcCCcHHHHHHH----HHHHHHHhcccccCCCe
Q 046721 139 -KFADLALLLIDASHGFEMETFEFLNLMQNH-G---LPNVMGVLTHLDKFTDKKKLRKT----KQHLKHRFGTELYHGAK 209 (1068)
Q Consensus 139 -kvADlVLlVIDas~g~e~~t~eiL~~L~~~-G---lP~vIvVLNKiDlvk~~k~l~~v----kk~Lk~~~~~e~~~~~k 209 (1068)
..+|++|||+|+.. +......++..++.. | ..++|+|+|+.|.+... .+... ...|+..+.. .+..
T Consensus 81 ~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~-~~~~~~~~~~~~l~~l~~~---c~~r 155 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG-TLEDYLENSCEALKRLLEK---CGGR 155 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC-cHHHHHHhccHHHHHHHHH---hCCe
Confidence 45799999999987 877777888877653 4 34688999999987532 11111 1222222211 1344
Q ss_pred EEEEecccCCcCCchhhcchHHHHHHhhc
Q 046721 210 LFKLSGLIQGKYTKKDIGNLAEFISVMKF 238 (1068)
Q Consensus 210 Vf~ISAl~g~~y~~~ei~nLlR~I~~~k~ 238 (1068)
++.++......-....+..|+..|..+..
T Consensus 156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~ 184 (196)
T cd01852 156 YVAFNNKAKGEEQEQQVKELLAKVESMVK 184 (196)
T ss_pred EEEEeCCCCcchhHHHHHHHHHHHHHHHH
Confidence 55555432101134567777777766554
No 203
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.14 E-value=5.4e-10 Score=116.75 Aligned_cols=151 Identities=17% Similarity=0.158 Sum_probs=89.5
Q ss_pred EEEEECCCCCChhHHHHHHHhcccc--CCCCceeccEE---EE-eCCCeeEEEEeCCCC--hhHHHHH-HHhcCEEEEEE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTK--LKVPEVRGPVT---VV-SGKKRRLQFVECPND--INGMIDC-AKFADLALLLI 148 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~--~~~~tt~~~It---i~-~~~k~rl~fIDtPGd--l~smld~-akvADlVLlVI 148 (1068)
.|+|+|.+|+|||||+++|++.... ....++...+. +. .+....+.|+||||. +..+... ...+|++|||+
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~ 81 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCY 81 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEE
Confidence 5899999999999999999976321 22223222221 11 123456779999993 3444443 46899999999
Q ss_pred eCCCCCchhH-HHHHHHHHhC--CCCcEEEEEeCCCcCCcHHHHHHH-HHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 149 DASHGFEMET-FEFLNLMQNH--GLPNVMGVLTHLDKFTDKKKLRKT-KQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 149 Das~g~e~~t-~eiL~~L~~~--GlP~vIvVLNKiDlvk~~k~l~~v-kk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
|++....-+. ..++..+... ++| +|+|.||+|+.........+ ...+.... .. .+..+|.+||+++ .
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~v~~~~~~~~~-~~--~~~~~~~~Sa~~~-----~ 152 (193)
T cd04118 82 DLTDSSSFERAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDRSLRQVDFHDVQDFA-DE--IKAQHFETSSKTG-----Q 152 (193)
T ss_pred ECCCHHHHHHHHHHHHHHHhcCCCCC-EEEEEEcccccccccccCccCHHHHHHHH-HH--cCCeEEEEeCCCC-----C
Confidence 9976422211 2344444433 577 89999999986421111110 01111111 11 1467899999965 5
Q ss_pred hhcchHHHHHHhh
Q 046721 225 DIGNLAEFISVMK 237 (1068)
Q Consensus 225 ei~nLlR~I~~~k 237 (1068)
++..|...|....
T Consensus 153 gv~~l~~~i~~~~ 165 (193)
T cd04118 153 NVDELFQKVAEDF 165 (193)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666665443
No 204
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.13 E-value=5.6e-10 Score=119.48 Aligned_cols=148 Identities=18% Similarity=0.231 Sum_probs=86.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCCCceec-cE---EEE--eCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRG-PV---TVV--SGKKRRLQFVECPND--INGMI-DCAKFADLALLL 147 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~-~I---ti~--~~~k~rl~fIDtPGd--l~sml-d~akvADlVLlV 147 (1068)
..|+|+|.+|||||||+++|++.........+.+ .+ ++. .+....+.|+||||. +..+. ..++.+|++|||
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv 82 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLV 82 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEE
Confidence 5799999999999999999997632221111111 11 111 123468899999994 33433 456889999999
Q ss_pred EeCCCCCchhH-HHHHHHH-HhC--CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 148 IDASHGFEMET-FEFLNLM-QNH--GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 148 IDas~g~e~~t-~eiL~~L-~~~--GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
+|++..-.-.. ...+..+ ... ..+.+|+|.||+|+.............+.+.+ +..++.+||++|
T Consensus 83 ~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~------~~~~~e~Sak~g----- 151 (211)
T cd04111 83 FDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDL------GMKYIETSARTG----- 151 (211)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHh------CCEEEEEeCCCC-----
Confidence 99986421111 1222222 221 22337889999998752211111222222222 377999999865
Q ss_pred hhhcchHHHHHH
Q 046721 224 KDIGNLAEFISV 235 (1068)
Q Consensus 224 ~ei~nLlR~I~~ 235 (1068)
..+..+...|..
T Consensus 152 ~~v~e~f~~l~~ 163 (211)
T cd04111 152 DNVEEAFELLTQ 163 (211)
T ss_pred CCHHHHHHHHHH
Confidence 455566655544
No 205
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.13 E-value=6e-10 Score=113.93 Aligned_cols=148 Identities=21% Similarity=0.207 Sum_probs=85.4
Q ss_pred EEEECCCCCChhHHHHHHHhccc-cCCCCceeccEE--EEe-CCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEeCC
Q 046721 79 VVVQGPPQVGKSLLIKCLIKHYT-KLKVPEVRGPVT--VVS-GKKRRLQFVECPND--INGMID-CAKFADLALLLIDAS 151 (1068)
Q Consensus 79 VaVVG~pnvGKSTLIn~L~~~~~-~~~~~tt~~~It--i~~-~~k~rl~fIDtPGd--l~smld-~akvADlVLlVIDas 151 (1068)
|+|+|.+|+|||||++++++..- .....+...... +.. +....+.|+||||. +..+.. ..+.+|++|||+|++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 58999999999999999998632 212222211111 222 23457899999993 333333 357899999999997
Q ss_pred CCC--chhHHHHHHHHHh--CCCCcEEEEEeCCCcCCcHHHHHHHH---------HHHHHHhcccccCCCeEEEEecccC
Q 046721 152 HGF--EMETFEFLNLMQN--HGLPNVMGVLTHLDKFTDKKKLRKTK---------QHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 152 ~g~--e~~t~eiL~~L~~--~GlP~vIvVLNKiDlvk~~k~l~~vk---------k~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
..- +......+..+.. .++| +|+|.||+|+..+........ +.... +... .....+|.+||+++
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~-~~~~~~~e~Sa~~~ 157 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTP-IILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEA-LAKR-IGAVKYLECSALTQ 157 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCC-EEEEecChhhhhChhhhhhhhcccCCCccHHHHHH-HHHH-cCCcEEEEecCCCC
Confidence 542 2111123444433 3677 899999999975322111110 00000 1111 12347899999865
Q ss_pred CcCCchhhcchHHHHH
Q 046721 219 GKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 219 ~~y~~~ei~nLlR~I~ 234 (1068)
..+..+...+.
T Consensus 158 -----~~v~~lf~~l~ 168 (174)
T smart00174 158 -----EGVREVFEEAI 168 (174)
T ss_pred -----CCHHHHHHHHH
Confidence 55566655443
No 206
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.13 E-value=9e-10 Score=112.91 Aligned_cols=135 Identities=16% Similarity=0.240 Sum_probs=82.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCCCceec-cE---EE-EeCCCeeEEEEeCCCC--hh-HHHH-HHHhcCEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRG-PV---TV-VSGKKRRLQFVECPND--IN-GMID-CAKFADLALLL 147 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~-~I---ti-~~~~k~rl~fIDtPGd--l~-smld-~akvADlVLlV 147 (1068)
..|+|||++|+|||||+++|+..........+.+ .+ .+ ..+....+.++||||. +. .++. .++.+|++|+|
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v 82 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFV 82 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEE
Confidence 5799999999999999999987632211111111 11 11 1233568999999993 43 3444 45789999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 148 IDASHGFEMETF-EFLNLMQN----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 148 IDas~g~e~~t~-eiL~~L~~----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
+|++.+-.-+.. .++..+.. .++| +|+|+||+|+...........+.+... ...++|.+||+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~e~Sa~~~ 151 (170)
T cd04115 83 YDVTNMASFHSLPSWIEECEQHSLPNEVP-RILVGNKCDLREQIQVPTDLAQRFADA------HSMPLFETSAKDP 151 (170)
T ss_pred EECCCHHHHHhHHHHHHHHHHhcCCCCCC-EEEEEECccchhhcCCCHHHHHHHHHH------cCCcEEEEeccCC
Confidence 999864332222 33333332 3467 899999999864221111222222222 1467899999863
No 207
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.13 E-value=7.9e-10 Score=113.77 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=89.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc-c-cCCCCceeccEE---EE-eCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY-T-KLKVPEVRGPVT---VV-SGKKRRLQFVECPND--INGM-IDCAKFADLALL 146 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~-~-~~~~~tt~~~It---i~-~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLl 146 (1068)
-..|+|+|.+|||||||++++++.. . .....|+...+. +. .+....+.++|++|. +..+ ...+..||++||
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ll 83 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACL 83 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEE
Confidence 3679999999999999999999863 2 222333222211 22 233457888899984 3332 334689999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHh-CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 147 LIDASHGFEMET-FEFLNLMQN-HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 147 VIDas~g~e~~t-~eiL~~L~~-~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
|+|++..-.-+. .+++..+.. .++| +|+|+||+|+...........+.+...+ ....++++||+++ .
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~-----~ 152 (169)
T cd01892 84 VYDSSDPKSFSYCAEVYKKYFMLGEIP-CLFVAAKADLDEQQQRYEVQPDEFCRKL-----GLPPPLHFSSKLG-----D 152 (169)
T ss_pred EEeCCCHHHHHHHHHHHHHhccCCCCe-EEEEEEcccccccccccccCHHHHHHHc-----CCCCCEEEEeccC-----c
Confidence 999976422111 123333322 2567 8999999998643211111112222222 2234689999865 4
Q ss_pred hhcchHHHHHHh
Q 046721 225 DIGNLAEFISVM 236 (1068)
Q Consensus 225 ei~nLlR~I~~~ 236 (1068)
.+..+.+.|...
T Consensus 153 ~v~~lf~~l~~~ 164 (169)
T cd01892 153 SSNELFTKLATA 164 (169)
T ss_pred cHHHHHHHHHHH
Confidence 666666666544
No 208
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.12 E-value=6.6e-10 Score=107.33 Aligned_cols=132 Identities=18% Similarity=0.156 Sum_probs=82.8
Q ss_pred EECCCCCChhHHHHHHHhccc-cCCCCceeccEE-EE-e--CCCeeEEEEeCCCCh--hH-HHHHHHhcCEEEEEEeCCC
Q 046721 81 VQGPPQVGKSLLIKCLIKHYT-KLKVPEVRGPVT-VV-S--GKKRRLQFVECPNDI--NG-MIDCAKFADLALLLIDASH 152 (1068)
Q Consensus 81 VVG~pnvGKSTLIn~L~~~~~-~~~~~tt~~~It-i~-~--~~k~rl~fIDtPGdl--~s-mld~akvADlVLlVIDas~ 152 (1068)
|+|++|+|||||+++|++... ......+...+. +. . .....++++||||.. .. ....+..+|++++|+|++.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998754 222212211111 11 1 236789999999943 22 4556789999999999997
Q ss_pred CCchhHHH-----HHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 153 GFEMETFE-----FLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 153 g~e~~t~e-----iL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
+....... .+......+.| +++|+||+|+...... .... ... .+ ......++|.+|+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~~~~~~-~~~~-~~~-~~--~~~~~~~~~~~s~~~~ 145 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIP-IILVGNKIDLPEERVV-SEEE-LAE-QL--AKELGVPYFETSAKTG 145 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCc-EEEEEeccccccccch-HHHH-HHH-HH--HhhcCCcEEEEecCCC
Confidence 66544443 22333445777 8999999999753221 1111 000 01 1234678999998754
No 209
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.10 E-value=1.4e-09 Score=113.45 Aligned_cols=149 Identities=17% Similarity=0.106 Sum_probs=87.7
Q ss_pred EEEEECCCCCChhHHHHHHHhccccC-CCCceeccE---EEEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEEe
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVRGPV---TVVS-GKKRRLQFVECPND--ING-MIDCAKFADLALLLID 149 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~~~I---ti~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVID 149 (1068)
.|+|+|.++||||||+++|++..... ...+....+ .+.. +....+.|+||||. +.. ....++.||++|||+|
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d 81 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYD 81 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEE
Confidence 58999999999999999999763222 222221111 1222 23457889999994 333 3445689999999999
Q ss_pred CCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchh
Q 046721 150 ASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKD 225 (1068)
Q Consensus 150 as~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~e 225 (1068)
++..-.-.. ..++..+.. ...| +|+|.||+|+......-......+... .+.+++.+||+++ .+
T Consensus 82 ~~~~~s~~~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~~v~~~~~~~~~~~------~~~~~~evSa~~~-----~~ 149 (188)
T cd04125 82 VTDQESFENLKFWINEINRYARENVI-KVIVANKSDLVNNKVVDSNIAKSFCDS------LNIPFFETSAKQS-----IN 149 (188)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCCCcccccCCHHHHHHHHHH------cCCeEEEEeCCCC-----CC
Confidence 975432111 123333332 2355 899999999874221001111122111 1457999999865 55
Q ss_pred hcchHHHHHHhhc
Q 046721 226 IGNLAEFISVMKF 238 (1068)
Q Consensus 226 i~nLlR~I~~~k~ 238 (1068)
+..+...|.....
T Consensus 150 i~~~f~~l~~~~~ 162 (188)
T cd04125 150 VEEAFILLVKLII 162 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544433
No 210
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.10 E-value=8.6e-10 Score=122.00 Aligned_cols=76 Identities=26% Similarity=0.351 Sum_probs=62.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCCCeeEEEEeCCCChh----------HHHHHHHhcCE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGKKRRLQFVECPNDIN----------GMIDCAKFADL 143 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~k~rl~fIDtPGdl~----------smld~akvADl 143 (1068)
..|++||+|++|||||+|+|++.. +.....||..++- ++..++.+|+++|+||-+. .++..++.||+
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADl 143 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADL 143 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCE
Confidence 579999999999999999999974 4456666666665 6677889999999998221 27888999999
Q ss_pred EEEEEeCCC
Q 046721 144 ALLLIDASH 152 (1068)
Q Consensus 144 VLlVIDas~ 152 (1068)
|++|+|+..
T Consensus 144 IiiVld~~~ 152 (365)
T COG1163 144 IIIVLDVFE 152 (365)
T ss_pred EEEEEecCC
Confidence 999999974
No 211
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.10 E-value=1.7e-09 Score=112.41 Aligned_cols=147 Identities=15% Similarity=0.164 Sum_probs=87.0
Q ss_pred EEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE--EEe--CCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEe
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT--VVS--GKKRRLQFVECPND--INGMID-CAKFADLALLLID 149 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It--i~~--~~k~rl~fIDtPGd--l~smld-~akvADlVLlVID 149 (1068)
.|+|+|.+|+|||||+++|++.. .....+++...+. +.. +....+.|+||||. +..+.. .++.||++|||+|
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 81 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYA 81 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEE
Confidence 68999999999999999999763 2222233222211 222 23457899999993 444433 4578999999999
Q ss_pred CCCCCchhHH--HHHHHHH--hCCCCcEEEEEeCCCcCCcHHH---H-HHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 150 ASHGFEMETF--EFLNLMQ--NHGLPNVMGVLTHLDKFTDKKK---L-RKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 150 as~g~e~~t~--eiL~~L~--~~GlP~vIvVLNKiDlvk~~k~---l-~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
++..-.-+.. ..+..+. ..++| +|+|.||+|+...... + ....+.+...+ ...++|.+||++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~-----~~~~~~e~Sa~~~--- 152 (187)
T cd04132 82 VDNPTSLDNVEDKWFPEVNHFCPGTP-IMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQ-----GAFAYLECSAKTM--- 152 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhhhhCccccCCcCHHHHHHHHHHc-----CCcEEEEccCCCC---
Confidence 9854322221 1233232 23567 8999999998642100 0 11111111111 2237899999865
Q ss_pred CchhhcchHHHHHH
Q 046721 222 TKKDIGNLAEFISV 235 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~ 235 (1068)
..+.++...+..
T Consensus 153 --~~v~~~f~~l~~ 164 (187)
T cd04132 153 --ENVEEVFDTAIE 164 (187)
T ss_pred --CCHHHHHHHHHH
Confidence 555555544443
No 212
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=3.8e-10 Score=138.72 Aligned_cols=123 Identities=19% Similarity=0.253 Sum_probs=97.3
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccc--c-------------CCCCceeccEEEEe------CC-CeeEEEEeCCC--C
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYT--K-------------LKVPEVRGPVTVVS------GK-KRRLQFVECPN--D 130 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~--~-------------~~~~tt~~~Iti~~------~~-k~rl~fIDtPG--d 130 (1068)
..++|+|++|.++|||||..+|+.... + ...++...+|||.+ .. ..+|+|||||| |
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 368999999999999999999986420 0 01111234566532 34 48999999999 5
Q ss_pred hhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHh
Q 046721 131 ING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRF 200 (1068)
Q Consensus 131 l~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~ 200 (1068)
|.. +..+++++|.+|+|+||..|++.+++.+++.+...++| .|+++||+|.+. ..+..+.+.++.++
T Consensus 89 Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp-~i~fiNKmDR~~--a~~~~~~~~l~~~l 156 (697)
T COG0480 89 FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVP-RILFVNKMDRLG--ADFYLVVEQLKERL 156 (697)
T ss_pred cHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCC-eEEEEECccccc--cChhhhHHHHHHHh
Confidence 655 78889999999999999999999999999999999999 588999999985 44666777777766
No 213
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.10 E-value=1.2e-09 Score=111.98 Aligned_cols=135 Identities=14% Similarity=0.152 Sum_probs=82.7
Q ss_pred EEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEEEeCCCCC
Q 046721 79 VVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVTVVSGKKRRLQFVECPND--INGMI-DCAKFADLALLLIDASHGF 154 (1068)
Q Consensus 79 VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~sml-d~akvADlVLlVIDas~g~ 154 (1068)
|+|+|.+|||||||+++|++.. .....+|.......+...+.++.|+||||. +..+. ..++.||++|||+|++...
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 7899999999999999999763 222222221111223345788999999994 44543 4578999999999998643
Q ss_pred chhH-H-HHHHHHHh-CCCCcEEEEEeCCCcCCcHHHHHHHHHHHH-HHhcccccCCCeEEEEeccc
Q 046721 155 EMET-F-EFLNLMQN-HGLPNVMGVLTHLDKFTDKKKLRKTKQHLK-HRFGTELYHGAKLFKLSGLI 217 (1068)
Q Consensus 155 e~~t-~-eiL~~L~~-~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk-~~~~~e~~~~~kVf~ISAl~ 217 (1068)
.... . .+..++.. .++| +++|.||+|+.... ....+...+. ..+... ....+|.+||++
T Consensus 82 s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~--~~~~~~~~Sa~~ 144 (164)
T cd04162 82 RLPLARQELHQLLQHPPDLP-LVVLANKQDLPAAR-SVQEIHKELELEPIARG--RRWILQGTSLDD 144 (164)
T ss_pred HHHHHHHHHHHHHhCCCCCc-EEEEEeCcCCcCCC-CHHHHHHHhCChhhcCC--CceEEEEeeecC
Confidence 2111 1 23333332 4677 89999999986422 1222222210 111111 246688999885
No 214
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.09 E-value=1.4e-09 Score=111.54 Aligned_cols=146 Identities=12% Similarity=0.142 Sum_probs=88.6
Q ss_pred EEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccE---EEEe-CCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEEEe
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPV---TVVS-GKKRRLQFVECPND--INGMI-DCAKFADLALLLID 149 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~I---ti~~-~~k~rl~fIDtPGd--l~sml-d~akvADlVLlVID 149 (1068)
.|+|+|.+|||||||+++++... ......+....+ .+.. .....+.++||||. +..+. .....+|++|+|+|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 81 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFD 81 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEE
Confidence 68999999999999999998653 222222221111 1222 23567899999993 33333 24578999999999
Q ss_pred CCCCCchhHH-HHHHHHHh-C-CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhh
Q 046721 150 ASHGFEMETF-EFLNLMQN-H-GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDI 226 (1068)
Q Consensus 150 as~g~e~~t~-eiL~~L~~-~-GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei 226 (1068)
++.+..-+.. ..+..+.. . ++| +|+|.||+|+.... ......+ +.. ....++|.+||++| ..+
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~-~~~~~~~-~~~------~~~~~~~e~Sa~~~-----~~v 147 (166)
T cd00877 82 VTSRVTYKNVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRK-VKAKQIT-FHR------KKNLQYYEISAKSN-----YNF 147 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhccccc-CCHHHHH-HHH------HcCCEEEEEeCCCC-----CCh
Confidence 9865332221 23333333 2 577 89999999997321 1111111 111 13578999999965 566
Q ss_pred cchHHHHHHhh
Q 046721 227 GNLAEFISVMK 237 (1068)
Q Consensus 227 ~nLlR~I~~~k 237 (1068)
..+...|+...
T Consensus 148 ~~~f~~l~~~~ 158 (166)
T cd00877 148 EKPFLWLARKL 158 (166)
T ss_pred HHHHHHHHHHH
Confidence 66666665443
No 215
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.09 E-value=1.4e-09 Score=117.26 Aligned_cols=148 Identities=20% Similarity=0.181 Sum_probs=87.5
Q ss_pred EEEEECCCCCChhHHHHHHHhc-cc-cCCCCcee---ccEEEE-eCCCeeEEEEeCCCChhHHHH-HHH-hcCEEEEEEe
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKH-YT-KLKVPEVR---GPVTVV-SGKKRRLQFVECPNDINGMID-CAK-FADLALLLID 149 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~-~~-~~~~~tt~---~~Iti~-~~~k~rl~fIDtPGdl~smld-~ak-vADlVLlVID 149 (1068)
.|+|||.+|||||||+++|+.. +. .....+.. ...++. .+....+.|+||||.-..+.. ... .+|++|||+|
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ad~iilV~d 81 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTEDSCMQYQGDAFVVVYS 81 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchHHHhHHhhcCCCEEEEEEE
Confidence 5899999999999999999654 32 11111110 111222 234578999999995432222 235 8999999999
Q ss_pred CCCCCchh-HHHHHHHHHh----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 150 ASHGFEME-TFEFLNLMQN----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 150 as~g~e~~-t~eiL~~L~~----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
++..-.-. ...++..+.. .++| +|+|.||+|+...........+.+...+ +.++|++||+++ .
T Consensus 82 ~td~~S~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~~~v~~~~~~~~a~~~------~~~~~e~SA~~~-----~ 149 (221)
T cd04148 82 VTDRSSFERASELRIQLRRNRQLEDRP-IILVGNKSDLARSREVSVQEGRACAVVF------DCKFIETSAGLQ-----H 149 (221)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhccccceecHHHHHHHHHHc------CCeEEEecCCCC-----C
Confidence 98642211 1233343333 3567 8999999998653211111111222111 467899999865 5
Q ss_pred hhcchHHHHHHhh
Q 046721 225 DIGNLAEFISVMK 237 (1068)
Q Consensus 225 ei~nLlR~I~~~k 237 (1068)
.+..+...|....
T Consensus 150 gv~~l~~~l~~~~ 162 (221)
T cd04148 150 NVDELLEGIVRQI 162 (221)
T ss_pred CHHHHHHHHHHHH
Confidence 5666665554433
No 216
>PLN03110 Rab GTPase; Provisional
Probab=99.09 E-value=1.6e-09 Score=116.24 Aligned_cols=150 Identities=16% Similarity=0.172 Sum_probs=91.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcccc-CCCCceecc---EEEEe-CCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTK-LKVPEVRGP---VTVVS-GKKRRLQFVECPND--INGMID-CAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~-~~~~tt~~~---Iti~~-~~k~rl~fIDtPGd--l~smld-~akvADlVLlV 147 (1068)
...|+|||.++||||||+++|++.... ....+.... .++.. +....+.|+||||. +.++.. .++.||++|||
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv 91 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEE
Confidence 367999999999999999999886322 111211111 11222 23458899999994 445444 46899999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 148 IDASHGFEMETF-EFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 148 IDas~g~e~~t~-eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
+|++....-+.. ..+..+.. .++| +|+|.||+|+...........+.+... ...+++.+||++|
T Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~~~~~~~~l~~~------~~~~~~e~SA~~g----- 159 (216)
T PLN03110 92 YDITKRQTFDNVQRWLRELRDHADSNIV-IMMAGNKSDLNHLRSVAEEDGQALAEK------EGLSFLETSALEA----- 159 (216)
T ss_pred EECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEEChhcccccCCCHHHHHHHHHH------cCCEEEEEeCCCC-----
Confidence 999754322221 33444443 3577 899999999864221111122222222 2578999999865
Q ss_pred hhhcchHHHHHHhh
Q 046721 224 KDIGNLAEFISVMK 237 (1068)
Q Consensus 224 ~ei~nLlR~I~~~k 237 (1068)
..+..+...|....
T Consensus 160 ~~v~~lf~~l~~~i 173 (216)
T PLN03110 160 TNVEKAFQTILLEI 173 (216)
T ss_pred CCHHHHHHHHHHHH
Confidence 44555555554433
No 217
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.09 E-value=1.6e-09 Score=117.09 Aligned_cols=106 Identities=21% Similarity=0.158 Sum_probs=70.0
Q ss_pred EEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEEEeCCCCC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--INGMI-DCAKFADLALLLIDASHGF 154 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~sml-d~akvADlVLlVIDas~g~ 154 (1068)
.|+|||.++||||||+++|+.........++...+.........+.|+||||. +..+. ..++.||++|||+|++...
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~ 81 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQ 81 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHH
Confidence 58999999999999999998764222333332222222234567899999993 44433 3468899999999998642
Q ss_pred c--hhHHHHHHHHHh--CCCCcEEEEEeCCCcCC
Q 046721 155 E--METFEFLNLMQN--HGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 155 e--~~t~eiL~~L~~--~GlP~vIvVLNKiDlvk 184 (1068)
. .....+..+... .++| +|+|.||+|+..
T Consensus 82 Sf~~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~~ 114 (220)
T cd04126 82 SLEELEDRFLGLTDTANEDCL-FAVVGNKLDLTE 114 (220)
T ss_pred HHHHHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 2 221223333332 3466 899999999864
No 218
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.09 E-value=1.3e-09 Score=121.55 Aligned_cols=146 Identities=20% Similarity=0.227 Sum_probs=99.7
Q ss_pred EEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEe-CCCeeEEEEeCCCChh----------HHHHHHHhcCEE
Q 046721 79 VVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVS-GKKRRLQFVECPNDIN----------GMIDCAKFADLA 144 (1068)
Q Consensus 79 VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~-~~k~rl~fIDtPGdl~----------smld~akvADlV 144 (1068)
|++||+||+||||||++++... ....+.||-.|.. ++. ....++++.|.||-+. ..|..+..+-++
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL 241 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVL 241 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhee
Confidence 7899999999999999999874 3456666665544 333 4567899999999332 478889999999
Q ss_pred EEEEeCCCCC--c-hhHH-HHHHHHHhC-----CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEec
Q 046721 145 LLLIDASHGF--E-METF-EFLNLMQNH-----GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSG 215 (1068)
Q Consensus 145 LlVIDas~g~--e-~~t~-eiL~~L~~~-----GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISA 215 (1068)
|+|||.+..- + .+.. .+...|.+. ..| .++|+||+|++-+.+.+....+.+.... .....+||||
T Consensus 242 ~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~-~ivv~NKiD~~~~~e~~~~~~~~l~~~~-----~~~~~~~ISa 315 (369)
T COG0536 242 LHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKP-RIVVLNKIDLPLDEEELEELKKALAEAL-----GWEVFYLISA 315 (369)
T ss_pred EEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCc-eEEEEeccCCCcCHHHHHHHHHHHHHhc-----CCCcceeeeh
Confidence 9999997422 1 1222 344455543 456 5789999997766667777776665442 1222233999
Q ss_pred ccCCcCCchhhcchHHHHHH
Q 046721 216 LIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 216 l~g~~y~~~ei~nLlR~I~~ 235 (1068)
+++ ..+..|++.+..
T Consensus 316 ~t~-----~g~~~L~~~~~~ 330 (369)
T COG0536 316 LTR-----EGLDELLRALAE 330 (369)
T ss_pred hcc-----cCHHHHHHHHHH
Confidence 854 566666655543
No 219
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.08 E-value=2.2e-09 Score=117.98 Aligned_cols=151 Identities=13% Similarity=0.203 Sum_probs=90.9
Q ss_pred EEEEECCCCCChhHHHHHHHhc-cccCCCCceeccEE-EEe--CCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEeC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPVT-VVS--GKKRRLQFVECPND--INGMID-CAKFADLALLLIDA 150 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~It-i~~--~~k~rl~fIDtPGd--l~smld-~akvADlVLlVIDa 150 (1068)
.|+|||.+|||||||++++++. +......|+..... .+. +....+.|+||+|. +..+.. .+..+|++|||+|+
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv 81 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSL 81 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeC
Confidence 5899999999999999999864 33222223221111 122 23467889999993 444444 35789999999999
Q ss_pred CCCCchhH-HHHHHHHHh------------CCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecc
Q 046721 151 SHGFEMET-FEFLNLMQN------------HGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGL 216 (1068)
Q Consensus 151 s~g~e~~t-~eiL~~L~~------------~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl 216 (1068)
+..-.-+. ..++..+.. .++| +|+|.||+|+..... ...++.+.+.. .....+|.+||+
T Consensus 82 ~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgNK~Dl~~~~~v~~~ei~~~~~~------~~~~~~~evSAk 154 (247)
T cd04143 82 DNRESFEEVCRLREQILETKSCLKNKTKENVKIP-MVICGNKADRDFPREVQRDEVEQLVGG------DENCAYFEVSAK 154 (247)
T ss_pred CCHHHHHHHHHHHHHHHHhhcccccccccCCCCc-EEEEEECccchhccccCHHHHHHHHHh------cCCCEEEEEeCC
Confidence 85322111 122222211 2566 899999999974211 12222222211 125679999999
Q ss_pred cCCcCCchhhcchHHHHHHhhccc
Q 046721 217 IQGKYTKKDIGNLAEFISVMKFHS 240 (1068)
Q Consensus 217 ~g~~y~~~ei~nLlR~I~~~k~r~ 240 (1068)
++ ..+..+...|......+
T Consensus 155 tg-----~gI~elf~~L~~~~~~p 173 (247)
T cd04143 155 KN-----SNLDEMFRALFSLAKLP 173 (247)
T ss_pred CC-----CCHHHHHHHHHHHhccc
Confidence 65 67777777776554333
No 220
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.08 E-value=5.8e-10 Score=122.79 Aligned_cols=148 Identities=20% Similarity=0.201 Sum_probs=99.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEEE-E-eCCCeeEEEEeCCC-----------ChhHHHHHHH
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVTV-V-SGKKRRLQFVECPN-----------DINGMIDCAK 139 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~Iti-~-~~~k~rl~fIDtPG-----------dl~smld~ak 139 (1068)
+-.+|+|||++|+||||||++|++.. .......|-.+.+. . ...+..+.|.||-| .|.++|..+.
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVa 256 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVA 256 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHh
Confidence 44689999999999999999999763 22222222222221 1 12245788889998 3567888899
Q ss_pred hcCEEEEEEeCCCCCch-hHHHHHHHHHhCCCC------cEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEE
Q 046721 140 FADLALLLIDASHGFEM-ETFEFLNLMQNHGLP------NVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFK 212 (1068)
Q Consensus 140 vADlVLlVIDas~g~e~-~t~eiL~~L~~~GlP------~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ 212 (1068)
.||++|+|+|.|++.-+ +...+|..|...|+| ++|-|-||+|..+.. ...+ ..-.++
T Consensus 257 eadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-------------~e~E---~n~~v~ 320 (410)
T KOG0410|consen 257 EADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-------------VEEE---KNLDVG 320 (410)
T ss_pred hcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-------------Cccc---cCCccc
Confidence 99999999999987544 445789999999986 456677888875421 0001 112688
Q ss_pred EecccCCcCCchhhcchHHHHHHhhcccccc
Q 046721 213 LSGLIQGKYTKKDIGNLAEFISVMKFHSLSW 243 (1068)
Q Consensus 213 ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~w 243 (1068)
+||++| .+...++..+.........|
T Consensus 321 isaltg-----dgl~el~~a~~~kv~~~t~~ 346 (410)
T KOG0410|consen 321 ISALTG-----DGLEELLKAEETKVASETTV 346 (410)
T ss_pred cccccC-----ccHHHHHHHHHHHhhhhhee
Confidence 999966 66666776665444444444
No 221
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.08 E-value=2.5e-09 Score=110.24 Aligned_cols=148 Identities=17% Similarity=0.167 Sum_probs=87.5
Q ss_pred EEEEECCCCCChhHHHHHHHhc-cccCCCCceeccEE---EE-eCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEEe
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPVT---VV-SGKKRRLQFVECPND--INGM-IDCAKFADLALLLID 149 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~It---i~-~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVID 149 (1068)
.|++||.+++|||||+++++.. +......+....+. +. .+...++.|+||||. +..+ ...++.||++|||+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 5889999999999999999986 32222223221111 21 233568999999994 4443 344789999999999
Q ss_pred CCCCCchh-HHHHHHHHHhCCC---CcEEEEEeCCCcCCcHH--HHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 150 ASHGFEME-TFEFLNLMQNHGL---PNVMGVLTHLDKFTDKK--KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 150 as~g~e~~-t~eiL~~L~~~Gl---P~vIvVLNKiDlvk~~k--~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
++..-.-. ....+..+..... +.+|+|.||+|+.+... ........+...+ ..+++.+||++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~------~~~~~e~Sa~~g----- 150 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEM------QAEYWSVSALSG----- 150 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHc------CCeEEEEECCCC-----
Confidence 97522111 1233433333222 34889999999864211 0111111222221 457899999865
Q ss_pred hhhcchHHHHHHh
Q 046721 224 KDIGNLAEFISVM 236 (1068)
Q Consensus 224 ~ei~nLlR~I~~~ 236 (1068)
..+..+...|...
T Consensus 151 ~~v~~lf~~l~~~ 163 (170)
T cd04108 151 ENVREFFFRVAAL 163 (170)
T ss_pred CCHHHHHHHHHHH
Confidence 4555555555443
No 222
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.08 E-value=1.9e-09 Score=117.33 Aligned_cols=75 Identities=31% Similarity=0.375 Sum_probs=55.0
Q ss_pred EEEEECCCCCChhHHHHHHHhccc--cCCCCceeccEE-EEeCCCeeEEEEeCCCCh----------hHHHHHHHhcCEE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYT--KLKVPEVRGPVT-VVSGKKRRLQFVECPNDI----------NGMIDCAKFADLA 144 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~--~~~~~tt~~~It-i~~~~k~rl~fIDtPGdl----------~smld~akvADlV 144 (1068)
.|+++|+||+|||||+|+|++... .....+|..++. .+...+..++++||||.. ..++..++.||++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 589999999999999999998742 222333333333 233456789999999931 1356778999999
Q ss_pred EEEEeCCC
Q 046721 145 LLLIDASH 152 (1068)
Q Consensus 145 LlVIDas~ 152 (1068)
|+|+|++.
T Consensus 82 l~V~D~t~ 89 (233)
T cd01896 82 LMVLDATK 89 (233)
T ss_pred EEEecCCc
Confidence 99999875
No 223
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.08 E-value=1.8e-09 Score=115.06 Aligned_cols=149 Identities=18% Similarity=0.245 Sum_probs=90.1
Q ss_pred EEEEECCCCCChhHHHHHHHhc-cccCCCCceeccE---EEEe-CCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEEEe
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPV---TVVS-GKKRRLQFVECPND--INGMI-DCAKFADLALLLID 149 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~I---ti~~-~~k~rl~fIDtPGd--l~sml-d~akvADlVLlVID 149 (1068)
.|+|+|..+||||||+++++.. +......|....+ ++.. +....+.|+||+|. +.++. ..++.||++|||+|
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD 81 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD 81 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence 5899999999999999999875 3222222221111 1222 23578899999994 55544 45689999999999
Q ss_pred CCCCCchhHH-HHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchh
Q 046721 150 ASHGFEMETF-EFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKD 225 (1068)
Q Consensus 150 as~g~e~~t~-eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~e 225 (1068)
++..-.-+.. ..+..+.. .++| +|+|.||+|+.............+.+.+ .+..+|.+||++| .+
T Consensus 82 vtd~~Sf~~l~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~~v~~~~~~~~a~~~-----~~~~~~etSAktg-----~g 150 (202)
T cd04120 82 ITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDREISRQQGEKFAQQI-----TGMRFCEASAKDN-----FN 150 (202)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccccCHHHHHHHHHhc-----CCCEEEEecCCCC-----CC
Confidence 9864322221 23333432 3566 8999999998642211111111111111 2457899999966 56
Q ss_pred hcchHHHHHHhh
Q 046721 226 IGNLAEFISVMK 237 (1068)
Q Consensus 226 i~nLlR~I~~~k 237 (1068)
+..+...|....
T Consensus 151 V~e~F~~l~~~~ 162 (202)
T cd04120 151 VDEIFLKLVDDI 162 (202)
T ss_pred HHHHHHHHHHHH
Confidence 666665555443
No 224
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.05 E-value=2.5e-09 Score=109.33 Aligned_cols=106 Identities=20% Similarity=0.239 Sum_probs=67.8
Q ss_pred EEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE--EEe-CCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEeC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT--VVS-GKKRRLQFVECPND--INGMID-CAKFADLALLLIDA 150 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It--i~~-~~k~rl~fIDtPGd--l~smld-~akvADlVLlVIDa 150 (1068)
.|+|+|++|+|||||+++|+... .....++....+. +.. .....+.|+||||. +..+.. ....+|++|+|+|.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~ 81 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSV 81 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEEC
Confidence 58999999999999999998763 2222233222222 222 22456789999994 333332 35788999999998
Q ss_pred CCCCchhH--HHHHHHHH--hCCCCcEEEEEeCCCcCC
Q 046721 151 SHGFEMET--FEFLNLMQ--NHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 151 s~g~e~~t--~eiL~~L~--~~GlP~vIvVLNKiDlvk 184 (1068)
+..-.-+. ..++..+. ..++| +++|.||+|+..
T Consensus 82 ~~~~s~~~~~~~~~~~l~~~~~~~p-iivv~nK~Dl~~ 118 (174)
T cd04135 82 VNPASFQNVKEEWVPELKEYAPNVP-YLLVGTQIDLRD 118 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeEchhhhc
Confidence 75422111 12333333 24677 889999999864
No 225
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.05 E-value=3.5e-09 Score=109.72 Aligned_cols=147 Identities=21% Similarity=0.252 Sum_probs=87.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhc-cccCCCCceeccE--EE-EeCCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEe
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPV--TV-VSGKKRRLQFVECPND--INGMID-CAKFADLALLLID 149 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~I--ti-~~~~k~rl~fIDtPGd--l~smld-~akvADlVLlVID 149 (1068)
..|+|+|.+|||||||+.+++.. +......+....+ ++ ..+....+.|+||||. +..+.. ..+.||++|||+|
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 46899999999999999998864 3333333322111 12 2233568899999993 333333 4578999999999
Q ss_pred CCCCCchhHH--HHHHHHHh--CCCCcEEEEEeCCCcCCcHHHHHHHH------------HHHHHHhcccccCCCeEEEE
Q 046721 150 ASHGFEMETF--EFLNLMQN--HGLPNVMGVLTHLDKFTDKKKLRKTK------------QHLKHRFGTELYHGAKLFKL 213 (1068)
Q Consensus 150 as~g~e~~t~--eiL~~L~~--~GlP~vIvVLNKiDlvk~~k~l~~vk------------k~Lk~~~~~e~~~~~kVf~I 213 (1068)
++..-+-+.. .++..+.. .++| +|+|.||+|+........... +.+... .....+|.+
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~e~ 155 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE-----IGAVKYLEC 155 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHH-----cCCcEEEEe
Confidence 9863222221 23333332 2566 899999999864322111111 111111 123588999
Q ss_pred ecccCCcCCchhhcchHHHHH
Q 046721 214 SGLIQGKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 214 SAl~g~~y~~~ei~nLlR~I~ 234 (1068)
||++| ..+.++...+.
T Consensus 156 Sa~~~-----~~i~~~f~~l~ 171 (174)
T cd01871 156 SALTQ-----KGLKTVFDEAI 171 (174)
T ss_pred ccccc-----CCHHHHHHHHH
Confidence 99965 55555655443
No 226
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.04 E-value=1.5e-09 Score=115.65 Aligned_cols=106 Identities=21% Similarity=0.382 Sum_probs=70.0
Q ss_pred EEEEECCCCCChhHHHHHHHhccccCCCCceeccEE-EEe---CCCeeEEEEeCCCC--hhH-HHHHHHhc-CEEEEEEe
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVT-VVS---GKKRRLQFVECPND--ING-MIDCAKFA-DLALLLID 149 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~It-i~~---~~k~rl~fIDtPGd--l~s-mld~akvA-DlVLlVID 149 (1068)
.|+++|++++|||||+++|+......+..++...+. ... .....+.++||||. +.. +...++.+ ++||||+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998633222222222222 111 23568999999994 444 45567777 99999999
Q ss_pred CCCCCch--hHHH----HHHHHHh--CCCCcEEEEEeCCCcCC
Q 046721 150 ASHGFEM--ETFE----FLNLMQN--HGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 150 as~g~e~--~t~e----iL~~L~~--~GlP~vIvVLNKiDlvk 184 (1068)
++..... ...+ +|..+.. .++| +++|+||+|+..
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~p-vliv~NK~Dl~~ 123 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIP-VLIACNKQDLFT 123 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCC-EEEEecchhhcc
Confidence 9865221 1122 2222222 3677 899999999874
No 227
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.04 E-value=3.8e-09 Score=109.56 Aligned_cols=107 Identities=19% Similarity=0.230 Sum_probs=70.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhc-cccCCCCceeccEE--EEe-CCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEe
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPVT--VVS-GKKRRLQFVECPND--INGMID-CAKFADLALLLID 149 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~It--i~~-~~k~rl~fIDtPGd--l~smld-~akvADlVLlVID 149 (1068)
..|+|||.++||||||+++++.. +.....+|....+. +.. +...++.++||+|. +..+.. ..+.||++|||+|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 46899999999999999999865 33333344322222 222 23467889999993 444333 5678999999999
Q ss_pred CCCCCchhHH--HHHHHHHh--CCCCcEEEEEeCCCcCC
Q 046721 150 ASHGFEMETF--EFLNLMQN--HGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 150 as~g~e~~t~--eiL~~L~~--~GlP~vIvVLNKiDlvk 184 (1068)
++..-.-+.. ..+..+.. .++| +|+|.||+|+..
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~ 119 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHCPKTP-FLLVGTQIDLRD 119 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhh
Confidence 9864332221 23333332 3566 899999999864
No 228
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.03 E-value=1.1e-09 Score=113.67 Aligned_cols=152 Identities=15% Similarity=0.146 Sum_probs=95.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEeC
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--INGMID-CAKFADLALLLIDA 150 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~smld-~akvADlVLlVIDa 150 (1068)
.....|+|+|+.|+|||||++.|.........+|..-.+.-+...+.++.|+|++|. +..+.. ....+|+||||||+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDs 91 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDS 91 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEET
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEec
Confidence 345789999999999999999998764333223221122223346789999999996 444443 46789999999999
Q ss_pred CCCCc-hhHH-HHHHHHH---hCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccccc--CCCeEEEEecccCCcCCc
Q 046721 151 SHGFE-METF-EFLNLMQ---NHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELY--HGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 151 s~g~e-~~t~-eiL~~L~---~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~--~~~kVf~ISAl~g~~y~~ 223 (1068)
+..-. .+.. ++..++. ..++| +++++||.|+... -....+...+. ...+. ....++.+||++|
T Consensus 92 sd~~~l~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~~~~-~~~~~i~~~l~---l~~l~~~~~~~v~~~sa~~g----- 161 (175)
T PF00025_consen 92 SDPERLQEAKEELKELLNDPELKDIP-ILILANKQDLPDA-MSEEEIKEYLG---LEKLKNKRPWSVFSCSAKTG----- 161 (175)
T ss_dssp TGGGGHHHHHHHHHHHHTSGGGTTSE-EEEEEESTTSTTS-STHHHHHHHTT---GGGTTSSSCEEEEEEBTTTT-----
T ss_pred ccceeecccccchhhhcchhhcccce-EEEEeccccccCc-chhhHHHhhhh---hhhcccCCceEEEeeeccCC-----
Confidence 85321 1222 3333333 24677 8899999998642 11222222221 12222 3567899999865
Q ss_pred hhhcchHHHHHH
Q 046721 224 KDIGNLAEFISV 235 (1068)
Q Consensus 224 ~ei~nLlR~I~~ 235 (1068)
.++...+..|..
T Consensus 162 ~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 162 EGVDEGLEWLIE 173 (175)
T ss_dssp BTHHHHHHHHHH
T ss_pred cCHHHHHHHHHh
Confidence 666666666654
No 229
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.03 E-value=2.8e-09 Score=109.13 Aligned_cols=150 Identities=15% Similarity=0.187 Sum_probs=86.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE--EE-eCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEEEe
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT--VV-SGKKRRLQFVECPND--INGMI-DCAKFADLALLLID 149 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It--i~-~~~k~rl~fIDtPGd--l~sml-d~akvADlVLlVID 149 (1068)
..|+|+|.++||||||+++|++.. ......+....+. +. .+....+.++||||. +..+. ..+..+|++++|+|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 468999999999999999999863 2222222221111 22 223457899999994 33332 24578999999999
Q ss_pred CCCCCchhH--HHHHHHHHh--CCCCcEEEEEeCCCcCCcHHHHHHHHH---------HHHHHhcccccCCCeEEEEecc
Q 046721 150 ASHGFEMET--FEFLNLMQN--HGLPNVMGVLTHLDKFTDKKKLRKTKQ---------HLKHRFGTELYHGAKLFKLSGL 216 (1068)
Q Consensus 150 as~g~e~~t--~eiL~~L~~--~GlP~vIvVLNKiDlvk~~k~l~~vkk---------~Lk~~~~~e~~~~~kVf~ISAl 216 (1068)
++..-.-+. ..++..+.. .++| +++|+||+|+.........+.. ..+. +... .....+|++||+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~-~~~~-~~~~~~~~~Sa~ 158 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD-MANK-IGAFGYMECSAK 158 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhcccChhhhhhhhhccCCCccHHHHHH-HHHH-cCCcEEEEeccc
Confidence 874321111 123333332 3677 8999999998753221111100 0000 0001 123478999998
Q ss_pred cCCcCCchhhcchHHHHH
Q 046721 217 IQGKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 217 ~g~~y~~~ei~nLlR~I~ 234 (1068)
.| .++.++...|.
T Consensus 159 ~~-----~~v~~lf~~l~ 171 (175)
T cd01870 159 TK-----EGVREVFEMAT 171 (175)
T ss_pred cC-----cCHHHHHHHHH
Confidence 65 56666666654
No 230
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.02 E-value=1.5e-09 Score=132.73 Aligned_cols=138 Identities=21% Similarity=0.278 Sum_probs=88.0
Q ss_pred CCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCCCeeEEEEeCCCC--hhH------HHH-H--HHhcCEEEEEE
Q 046721 83 GPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGKKRRLQFVECPND--ING------MID-C--AKFADLALLLI 148 (1068)
Q Consensus 83 G~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd--l~s------mld-~--akvADlVLlVI 148 (1068)
|.||||||||+|+|++.. ++..+.+|..... .....+.++.++||||. +.+ +.. . ...+|+|++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 889999999999999874 2233333322221 12234567999999993 322 122 1 24689999999
Q ss_pred eCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcc
Q 046721 149 DASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGN 228 (1068)
Q Consensus 149 Das~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~n 228 (1068)
|++. .+. ...++..+...++| +++|+||+|+.+. ..+....+.+.+.+ +.+++++||++| .++.+
T Consensus 81 Dat~-ler-~l~l~~ql~~~~~P-iIIVlNK~Dl~~~-~~i~~d~~~L~~~l------g~pvv~tSA~tg-----~Gi~e 145 (591)
T TIGR00437 81 DASN-LER-NLYLTLQLLELGIP-MILALNLVDEAEK-KGIRIDEEKLEERL------GVPVVPTSATEG-----RGIER 145 (591)
T ss_pred cCCc-chh-hHHHHHHHHhcCCC-EEEEEehhHHHHh-CCChhhHHHHHHHc------CCCEEEEECCCC-----CCHHH
Confidence 9986 332 23344445567888 8999999998642 11222234444443 578999999865 56666
Q ss_pred hHHHHHH
Q 046721 229 LAEFISV 235 (1068)
Q Consensus 229 LlR~I~~ 235 (1068)
+...+..
T Consensus 146 L~~~i~~ 152 (591)
T TIGR00437 146 LKDAIRK 152 (591)
T ss_pred HHHHHHH
Confidence 6666643
No 231
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.02 E-value=4.9e-09 Score=106.74 Aligned_cols=145 Identities=14% Similarity=0.206 Sum_probs=84.7
Q ss_pred EEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccE---EEEe-CCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEEe
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPV---TVVS-GKKRRLQFVECPND--INGM-IDCAKFADLALLLID 149 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~I---ti~~-~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVID 149 (1068)
.|+|+|.+++|||||+++++... ......+....+ ++.. +....+.++||||. +..+ ....+.+|++|+|+|
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYD 81 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEE
Confidence 58999999999999999998753 222122211111 1221 22457889999994 3333 345689999999999
Q ss_pred CCCCCchhH-HHHHHHHHhC---CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchh
Q 046721 150 ASHGFEMET-FEFLNLMQNH---GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKD 225 (1068)
Q Consensus 150 as~g~e~~t-~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~e 225 (1068)
.+..-.-+. ...+..+..+ ++| +++|.||.|+.............+.+.. +.++|.+||++| ..
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~~v~~~~~~~~~~~~------~~~~~e~Sa~~~-----~~ 149 (161)
T cd04117 82 ISSERSYQHIMKWVSDVDEYAPEGVQ-KILIGNKADEEQKRQVGDEQGNKLAKEY------GMDFFETSACTN-----SN 149 (161)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCCCHHHHHHHHHHc------CCEEEEEeCCCC-----CC
Confidence 875321111 1233333222 455 8999999998642211111122222221 367899999865 45
Q ss_pred hcchHHHHH
Q 046721 226 IGNLAEFIS 234 (1068)
Q Consensus 226 i~nLlR~I~ 234 (1068)
+..+...|.
T Consensus 150 v~~~f~~l~ 158 (161)
T cd04117 150 IKESFTRLT 158 (161)
T ss_pred HHHHHHHHH
Confidence 555555543
No 232
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.02 E-value=4e-09 Score=113.63 Aligned_cols=150 Identities=13% Similarity=0.248 Sum_probs=91.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhc-cccCCCCce---eccEEEEe-CCCeeEEEEeCCCC--hhHHHH-HHHhcCEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEV---RGPVTVVS-GKKRRLQFVECPND--INGMID-CAKFADLAL 145 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt---~~~Iti~~-~~k~rl~fIDtPGd--l~smld-~akvADlVL 145 (1068)
.+...|+|||.+|||||||+++++.. .......+. ...+.+.. .....+.|+||||. +..+.. ..+.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 66789999999999999999998754 222222221 11122222 23568999999993 555544 468999999
Q ss_pred EEEeCCCCCchhHH-HHHHHHH--hCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 146 LLIDASHGFEMETF-EFLNLMQ--NHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 146 lVIDas~g~e~~t~-eiL~~L~--~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
||+|.+....-+.. ..+..+. ..++| +|+|.||+|+.........+ + +... ...++|.+||++|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v~~~~~-~-~~~~------~~~~~~e~SAk~~---- 157 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAKQV-T-FHRK------KNLQYYEISAKSN---- 157 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhhhhccCCHHHH-H-HHHh------cCCEEEEcCCCCC----
Confidence 99999864322221 2223222 24677 89999999985311101111 1 1111 2567899999965
Q ss_pred chhhcchHHHHHHhh
Q 046721 223 KKDIGNLAEFISVMK 237 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~k 237 (1068)
..+..+...|+...
T Consensus 158 -~~i~~~f~~l~~~~ 171 (219)
T PLN03071 158 -YNFEKPFLYLARKL 171 (219)
T ss_pred -CCHHHHHHHHHHHH
Confidence 55666666665443
No 233
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.01 E-value=8.9e-09 Score=107.69 Aligned_cols=149 Identities=14% Similarity=0.219 Sum_probs=87.2
Q ss_pred EEEEECCCCCChhHHHHHHHhc-cccCCCCceeccE---EEEe-CCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEe
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPV---TVVS-GKKRRLQFVECPND--INGMID-CAKFADLALLLID 149 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~I---ti~~-~~k~rl~fIDtPGd--l~smld-~akvADlVLlVID 149 (1068)
.|+++|.++||||||+++++.. +......|....+ ++.. +....+.++||+|. +..+.. .++.||++|||+|
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D 81 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFD 81 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEE
Confidence 5899999999999999999875 3332233321111 1222 23467899999994 555444 4689999999999
Q ss_pred CCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCc--HHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 150 ASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTD--KKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 150 as~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~--~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
++....-+. ...+..+.. ...| |+|.||+|+... ......+...... +...+ +..+|++||++|
T Consensus 82 ~t~~~s~~~i~~~~~~~~~~~~~~~p--ilVgnK~Dl~~~~~~~~~~~~~~~~~~-~a~~~--~~~~~e~SAk~g----- 151 (182)
T cd04128 82 LTRKSTLNSIKEWYRQARGFNKTAIP--ILVGTKYDLFADLPPEEQEEITKQARK-YAKAM--KAPLIFCSTSHS----- 151 (182)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCE--EEEEEchhccccccchhhhhhHHHHHH-HHHHc--CCEEEEEeCCCC-----
Confidence 986432222 123333332 2334 678999999631 0111111111111 11111 478999999965
Q ss_pred hhhcchHHHHHHh
Q 046721 224 KDIGNLAEFISVM 236 (1068)
Q Consensus 224 ~ei~nLlR~I~~~ 236 (1068)
..+.++...|...
T Consensus 152 ~~v~~lf~~l~~~ 164 (182)
T cd04128 152 INVQKIFKIVLAK 164 (182)
T ss_pred CCHHHHHHHHHHH
Confidence 5566666655443
No 234
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.00 E-value=4.6e-09 Score=107.98 Aligned_cols=106 Identities=24% Similarity=0.293 Sum_probs=69.7
Q ss_pred EEEEECCCCCChhHHHHHHHhc-cccCCCCceeccEE--EE-eCCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEeC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPVT--VV-SGKKRRLQFVECPND--INGMID-CAKFADLALLLIDA 150 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~It--i~-~~~k~rl~fIDtPGd--l~smld-~akvADlVLlVIDa 150 (1068)
.|+++|.+|+|||||+++++.. +......|....+. +. .+....+.|+||||. +..+.. .++.||++|||+|+
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~ 81 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSV 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEEC
Confidence 5899999999999999999764 33333333222111 22 233568899999993 333332 45789999999999
Q ss_pred CCCCc--hhHHHHHHHHHh--CCCCcEEEEEeCCCcCC
Q 046721 151 SHGFE--METFEFLNLMQN--HGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 151 s~g~e--~~t~eiL~~L~~--~GlP~vIvVLNKiDlvk 184 (1068)
+..-. .....++..+.. .++| +|+|+||+|+..
T Consensus 82 ~~~~sf~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 118 (173)
T cd04130 82 VNPSSFQNISEKWIPEIRKHNPKAP-IILVGTQADLRT 118 (173)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhhcc
Confidence 86432 222234444443 3567 899999999864
No 235
>PLN03108 Rab family protein; Provisional
Probab=99.00 E-value=5.9e-09 Score=111.40 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=87.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc-ccCCCCcee---ccEEEE-eCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVR---GPVTVV-SGKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~---~~Iti~-~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
...|+|||.+++|||||+++|++.. ......+.. ....+. .+....+.++||||. +.. ....++.||++|||
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 3679999999999999999999762 211111111 011111 123457889999994 333 34556889999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh---CCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 148 IDASHGFEMETF-EFLNLMQN---HGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 148 IDas~g~e~~t~-eiL~~L~~---~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
+|++..-.-+.. ..+..+.. ..+| +|+|.||+|+..... ......+..+ . .+..+|.+||+++
T Consensus 86 ~D~~~~~s~~~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~~~~~~~~~~~-~------~~~~~~e~Sa~~~---- 153 (210)
T PLN03108 86 YDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAVSTEEGEQFAK-E------HGLIFMEASAKTA---- 153 (210)
T ss_pred EECCcHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCccccCCCHHHHHHHHH-H------cCCEEEEEeCCCC----
Confidence 999753322211 22222222 2566 899999999864211 1111122111 1 1457999999865
Q ss_pred chhhcchHHHHHHhh
Q 046721 223 KKDIGNLAEFISVMK 237 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~k 237 (1068)
..+..+...++...
T Consensus 154 -~~v~e~f~~l~~~~ 167 (210)
T PLN03108 154 -QNVEEAFIKTAAKI 167 (210)
T ss_pred -CCHHHHHHHHHHHH
Confidence 45555554554443
No 236
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.98 E-value=5.7e-09 Score=109.41 Aligned_cols=152 Identities=14% Similarity=0.175 Sum_probs=88.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc-cCCCCceeccEE--E-EeCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEEEe
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT-KLKVPEVRGPVT--V-VSGKKRRLQFVECPND--INGMI-DCAKFADLALLLID 149 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~-~~~~~tt~~~It--i-~~~~k~rl~fIDtPGd--l~sml-d~akvADlVLlVID 149 (1068)
+.|+|+|.+|+|||||+++|+...- .....+....+. + ..+....+.|+||||. +..+. .....||++|+|+|
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 3689999999999999999987632 211222111111 2 1223467899999994 33332 23578999999999
Q ss_pred CCCCCchhH--HHHHHHHHh--CCCCcEEEEEeCCCcCCcHHHHHHHH----------HHHHHHhcccccCCCeEEEEec
Q 046721 150 ASHGFEMET--FEFLNLMQN--HGLPNVMGVLTHLDKFTDKKKLRKTK----------QHLKHRFGTELYHGAKLFKLSG 215 (1068)
Q Consensus 150 as~g~e~~t--~eiL~~L~~--~GlP~vIvVLNKiDlvk~~k~l~~vk----------k~Lk~~~~~e~~~~~kVf~ISA 215 (1068)
.+..-.-+. ...+..+.. .++| +|+|.||+|+...... .... ....... . .....++|.+||
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~-~~~~~~~~e~SA 156 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVK-LVLVALKCDLREARNE-RDDLQRYGKHTISYEEGLAVA-K-RINALRYLECSA 156 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccChhh-HHHHhhccCCCCCHHHHHHHH-H-HcCCCEEEEccC
Confidence 875432221 123444433 3667 8999999999753221 1110 0011111 1 113367899999
Q ss_pred ccCCcCCchhhcchHHHHHHhh
Q 046721 216 LIQGKYTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 216 l~g~~y~~~ei~nLlR~I~~~k 237 (1068)
++| .++.++...|....
T Consensus 157 k~~-----~~v~e~f~~l~~~~ 173 (189)
T cd04134 157 KLN-----RGVNEAFTEAARVA 173 (189)
T ss_pred CcC-----CCHHHHHHHHHHHH
Confidence 965 55666666665444
No 237
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.96 E-value=1.4e-08 Score=107.24 Aligned_cols=146 Identities=15% Similarity=0.245 Sum_probs=88.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc-ccCCCCceecc---EEEE-eCCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGP---VTVV-SGKKRRLQFVECPND--INGMID-CAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~---Iti~-~~~k~rl~fIDtPGd--l~smld-~akvADlVLlV 147 (1068)
...|+|+|..+||||||+.++.... ......+.... .++. .+....+.|+||+|. +..+.. .++.||++|||
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illV 85 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILV 85 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEE
Confidence 4789999999999999999998752 22211121111 1122 233568899999993 455544 45899999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh--CCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 148 IDASHGFEMETF-EFLNLMQN--HGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 148 IDas~g~e~~t~-eiL~~L~~--~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
+|.+...+-+.. ..+..+.. .++| +|+|.||+|+..... ...+.. .+... .+..+|.+||++|
T Consensus 86 fD~t~~~Sf~~~~~w~~~i~~~~~~~p-iilVGNK~DL~~~~~v~~~~~~-~~a~~------~~~~~~e~SAk~g----- 152 (189)
T cd04121 86 YDITNRWSFDGIDRWIKEIDEHAPGVP-KILVGNRLHLAFKRQVATEQAQ-AYAER------NGMTFFEVSPLCN----- 152 (189)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccchhccCCCHHHHH-HHHHH------cCCEEEEecCCCC-----
Confidence 999864332221 23333332 3566 899999999864211 111111 22112 1567999999976
Q ss_pred hhhcchHHHHH
Q 046721 224 KDIGNLAEFIS 234 (1068)
Q Consensus 224 ~ei~nLlR~I~ 234 (1068)
..+..+...|.
T Consensus 153 ~~V~~~F~~l~ 163 (189)
T cd04121 153 FNITESFTELA 163 (189)
T ss_pred CCHHHHHHHHH
Confidence 44444444443
No 238
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=6.6e-09 Score=118.47 Aligned_cols=107 Identities=20% Similarity=0.332 Sum_probs=84.8
Q ss_pred eEEEEECCCCCChhHHHHHHHhc---c-----cc---CCCCc--------eeccEEEEe------CCCeeEEEEeCCC--
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH---Y-----TK---LKVPE--------VRGPVTVVS------GKKRRLQFVECPN-- 129 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~---~-----~~---~~~~t--------t~~~Iti~~------~~k~rl~fIDtPG-- 129 (1068)
+..|||.||++|||||...|+-. . +. ...++ ...+|.|.+ +....+.++||||
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 57899999999999999888631 0 00 00111 112344432 4688999999999
Q ss_pred ChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC
Q 046721 130 DING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 130 dl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk 184 (1068)
||.. +-+.+-.+|.+|+||||..|++++|..++..|+..|+| +|..+||+|...
T Consensus 93 DFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iP-I~TFiNKlDR~~ 147 (528)
T COG4108 93 DFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIP-IFTFINKLDREG 147 (528)
T ss_pred ccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCc-eEEEeecccccc
Confidence 6764 78888889999999999999999999999999999999 899999999864
No 239
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.91 E-value=9.9e-09 Score=111.91 Aligned_cols=161 Identities=22% Similarity=0.176 Sum_probs=103.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcccc--CCCCceeccEE--EEeCCCeeEEEEeCCC-------C--hh-HHHHHHH
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTK--LKVPEVRGPVT--VVSGKKRRLQFVECPN-------D--IN-GMIDCAK 139 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~--~~~~tt~~~It--i~~~~k~rl~fIDtPG-------d--l~-smld~ak 139 (1068)
.+|.+|.++|.+|+|||||||+|...... ..+.....+.+ ..+.....++|+|||| | .. ..++.+.
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~ 116 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLP 116 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHhh
Confidence 56889999999999999999999964211 11121111122 2334467999999998 2 33 3889999
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhCCC-CcEEEEEeCCCcCCcH-----------HHHHHHHHHHHHHhcccccCC
Q 046721 140 FADLALLLIDASHGFEMETFEFLNLMQNHGL-PNVMGVLTHLDKFTDK-----------KKLRKTKQHLKHRFGTELYHG 207 (1068)
Q Consensus 140 vADlVLlVIDas~g~e~~t~eiL~~L~~~Gl-P~vIvVLNKiDlvk~~-----------k~l~~vkk~Lk~~~~~e~~~~ 207 (1068)
.+|+||+++++....-.-+..+++-+...+. .++++|+|..|...+. ..++.....-...+...+-+.
T Consensus 117 ~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V 196 (296)
T COG3596 117 KLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEV 196 (296)
T ss_pred hccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999987665555667776555444 4599999999986431 112222111111111222346
Q ss_pred CeEEEEecccCCcCCchhhcchHHHHHHhhcc
Q 046721 208 AKLFKLSGLIQGKYTKKDIGNLAEFISVMKFH 239 (1068)
Q Consensus 208 ~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r 239 (1068)
.+|++.|+. .+-++..|++.+.+..+.
T Consensus 197 ~pV~~~~~r-----~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 197 KPVVAVSGR-----LPWGLKELVRALITALPV 223 (296)
T ss_pred CCeEEeccc-----cCccHHHHHHHHHHhCcc
Confidence 677777754 445567777777666663
No 240
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.91 E-value=5.1e-09 Score=106.90 Aligned_cols=62 Identities=23% Similarity=0.317 Sum_probs=47.9
Q ss_pred CeeEEEEeCCCC--h-----hHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCC
Q 046721 119 KRRLQFVECPND--I-----NGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHL 180 (1068)
Q Consensus 119 k~rl~fIDtPGd--l-----~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKi 180 (1068)
...++||||||- . ..+.+.+..||+||+|++++..+......+|........+.+|+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 447999999992 1 1266677999999999999998877777777766666666799999985
No 241
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.91 E-value=3.6e-08 Score=103.71 Aligned_cols=154 Identities=18% Similarity=0.246 Sum_probs=90.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhc-cccCCCCceeccEE--E-EeCCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEe
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPVT--V-VSGKKRRLQFVECPND--INGMID-CAKFADLALLLID 149 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~It--i-~~~~k~rl~fIDtPGd--l~smld-~akvADlVLlVID 149 (1068)
..|+|+|.++||||||+.+++.. +......|....+. + +.+....+.++||+|. +..+.. ....||++|+|+|
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvyd 83 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFS 83 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEE
Confidence 67999999999999999999875 22232333222122 1 2233567899999994 444443 3578999999999
Q ss_pred CCCCCchhHH--HHHHHHHh--CCCCcEEEEEeCCCcCCcHHHHHHHHH---------HHHHHhcccccCCCeEEEEecc
Q 046721 150 ASHGFEMETF--EFLNLMQN--HGLPNVMGVLTHLDKFTDKKKLRKTKQ---------HLKHRFGTELYHGAKLFKLSGL 216 (1068)
Q Consensus 150 as~g~e~~t~--eiL~~L~~--~GlP~vIvVLNKiDlvk~~k~l~~vkk---------~Lk~~~~~e~~~~~kVf~ISAl 216 (1068)
.+..-.-+.. ..+..+.. .++| +|+|.||.|+.........+.. ..+. +... .....+|.+||+
T Consensus 84 it~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~-~a~~-~~~~~~~e~SAk 160 (191)
T cd01875 84 IASPSSYENVRHKWHPEVCHHCPNVP-ILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGA-LAKQ-IHAVKYLECSAL 160 (191)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHH-HHHH-cCCcEEEEeCCC
Confidence 9754322211 12222222 3667 8999999998643221111110 0000 1011 122578999999
Q ss_pred cCCcCCchhhcchHHHHHHhhc
Q 046721 217 IQGKYTKKDIGNLAEFISVMKF 238 (1068)
Q Consensus 217 ~g~~y~~~ei~nLlR~I~~~k~ 238 (1068)
+| .++.++...|.....
T Consensus 161 ~g-----~~v~e~f~~l~~~~~ 177 (191)
T cd01875 161 NQ-----DGVKEVFAEAVRAVL 177 (191)
T ss_pred CC-----CCHHHHHHHHHHHHh
Confidence 65 556666666654443
No 242
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.91 E-value=6.7e-09 Score=100.69 Aligned_cols=135 Identities=20% Similarity=0.312 Sum_probs=96.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCCh-------hHHHHHHHhcCEEEEEEe
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPNDI-------NGMIDCAKFADLALLLID 149 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGdl-------~smld~akvADlVLlVID 149 (1068)
..+++||..++|||||.++|-|.++..+- | ..|.... + -.|||||.+ .+++..+..||++++|..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK--T-QAve~~d--~---~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK--T-QAVEFND--K---GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcc--c-ceeeccC--c---cccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 35899999999999999999998754321 1 1111111 1 238999942 346777899999999999
Q ss_pred CCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcch
Q 046721 150 ASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNL 229 (1068)
Q Consensus 150 as~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nL 229 (1068)
++++.....-.|+.+ +..++|+|++|+|+.. .+++..++..|.+. +-.+||.+|+. .++++..|
T Consensus 74 and~~s~f~p~f~~~----~~k~vIgvVTK~DLae-d~dI~~~~~~L~ea------Ga~~IF~~s~~-----d~~gv~~l 137 (148)
T COG4917 74 ANDPESRFPPGFLDI----GVKKVIGVVTKADLAE-DADISLVKRWLREA------GAEPIFETSAV-----DNQGVEEL 137 (148)
T ss_pred ccCccccCCcccccc----cccceEEEEecccccc-hHhHHHHHHHHHHc------CCcceEEEecc-----CcccHHHH
Confidence 988765444445443 4445999999999986 36677777776554 36689999998 55788888
Q ss_pred HHHHHH
Q 046721 230 AEFISV 235 (1068)
Q Consensus 230 lR~I~~ 235 (1068)
..+|..
T Consensus 138 ~~~L~~ 143 (148)
T COG4917 138 VDYLAS 143 (148)
T ss_pred HHHHHh
Confidence 877754
No 243
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.90 E-value=2.1e-08 Score=114.99 Aligned_cols=146 Identities=15% Similarity=0.276 Sum_probs=99.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc------------------ccCCCC---ceeccEEE-------Ee--CCCeeEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY------------------TKLKVP---EVRGPVTV-------VS--GKKRRLQFV 125 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~------------------~~~~~~---tt~~~Iti-------~~--~~k~rl~fI 125 (1068)
-+.|+|+|+.++|||||||+|.+.. ++.... +|..|..+ .. +-+.++.||
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 3789999999999999999999972 111111 23333331 11 225789999
Q ss_pred eCCC-----Ch-----hH----------------------HHHHHH-hcCEEEEEE-eCC------CCCchhHHHHHHHH
Q 046721 126 ECPN-----DI-----NG----------------------MIDCAK-FADLALLLI-DAS------HGFEMETFEFLNLM 165 (1068)
Q Consensus 126 DtPG-----dl-----~s----------------------mld~ak-vADlVLlVI-Das------~g~e~~t~eiL~~L 165 (1068)
||+| .+ .. +...+. .+|+.|+|. |++ ..+......++..|
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 9998 11 11 344455 899999999 887 44556667899999
Q ss_pred HhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchHHHH
Q 046721 166 QNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFI 233 (1068)
Q Consensus 166 ~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I 233 (1068)
+..|+| +|+|+|+.|-..+. -..+.+.+...+ +.+++++|+..= ...++..+++-+
T Consensus 177 k~~~kP-fiivlN~~dp~~~e--t~~l~~~l~eky------~vpvl~v~c~~l---~~~DI~~il~~v 232 (492)
T TIGR02836 177 KELNKP-FIILLNSTHPYHPE--TEALRQELEEKY------DVPVLAMDVESM---RESDILSVLEEV 232 (492)
T ss_pred HhcCCC-EEEEEECcCCCCch--hHHHHHHHHHHh------CCceEEEEHHHc---CHHHHHHHHHHH
Confidence 999999 89999999944322 223334444443 578899998643 667777777544
No 244
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.87 E-value=3.9e-08 Score=109.89 Aligned_cols=135 Identities=21% Similarity=0.384 Sum_probs=87.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccC-----------CCCcee-ccEEE-Ee--CCCeeEEEEeCCC--Ch-----
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKL-----------KVPEVR-GPVTV-VS--GKKRRLQFVECPN--DI----- 131 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~-----------~~~tt~-~~Iti-~~--~~k~rl~fIDtPG--dl----- 131 (1068)
|-...|+|||.+|+|||||+|+|++..... ...++. ...+. .. +...++++||||| +.
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence 345789999999999999999999873211 111111 11111 11 2245899999999 11
Q ss_pred --hHHHH-----------H---H--------HhcCEEEEEEeCC-CCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcH
Q 046721 132 --NGMID-----------C---A--------KFADLALLLIDAS-HGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDK 186 (1068)
Q Consensus 132 --~smld-----------~---a--------kvADlVLlVIDas-~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~ 186 (1068)
..+++ . . ..+|+||++++++ .++...+.+++..+.. ++| +|+|+||+|++..
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~-vi~VinK~D~l~~- 158 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVN-IIPVIAKADTLTP- 158 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCC-EEEEEECCCcCCH-
Confidence 11111 0 0 1479999999987 4777777888998874 777 8999999999863
Q ss_pred HHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 187 KKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 187 k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
..+...++.+.+.+.. .+.++|...
T Consensus 159 ~e~~~~k~~i~~~l~~---~~i~~~~~~ 183 (276)
T cd01850 159 EELKEFKQRIMEDIEE---HNIKIYKFP 183 (276)
T ss_pred HHHHHHHHHHHHHHHH---cCCceECCC
Confidence 3444555555444422 256777655
No 245
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.87 E-value=4.7e-08 Score=111.15 Aligned_cols=74 Identities=19% Similarity=0.217 Sum_probs=53.0
Q ss_pred EEEECCCCCChhHHHHHHHhccc--cCCCCceeccEE-EEe-----------------------C-CCeeEEEEeCCCC-
Q 046721 79 VVVQGPPQVGKSLLIKCLIKHYT--KLKVPEVRGPVT-VVS-----------------------G-KKRRLQFVECPND- 130 (1068)
Q Consensus 79 VaVVG~pnvGKSTLIn~L~~~~~--~~~~~tt~~~It-i~~-----------------------~-~k~rl~fIDtPGd- 130 (1068)
|++||.||+|||||+|+|++... ...+.+|..++. +.. + ....++|+||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 68999999999999999998742 223344433322 111 1 1247999999993
Q ss_pred --------hh-HHHHHHHhcCEEEEEEeCCC
Q 046721 131 --------IN-GMIDCAKFADLALLLIDASH 152 (1068)
Q Consensus 131 --------l~-smld~akvADlVLlVIDas~ 152 (1068)
+. .+++.++.||++|+|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 22 37888999999999999973
No 246
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1.6e-08 Score=121.22 Aligned_cols=154 Identities=16% Similarity=0.211 Sum_probs=111.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc-------------cCCCCceeccEEEEe------CCCeeEEEEeCCC--ChhH-
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT-------------KLKVPEVRGPVTVVS------GKKRRLQFVECPN--DING- 133 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~-------------~~~~~tt~~~Iti~~------~~k~rl~fIDtPG--dl~s- 133 (1068)
-++|++|.|.++|||||+.+|+.+.. .....+...+||+-+ .+...+.|||+|| ||.+
T Consensus 9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~se 88 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSE 88 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhh
Confidence 47899999999999999999997521 112222334577533 2578999999999 7777
Q ss_pred HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcC------CcHHHHHHH---HHHHHHHh----
Q 046721 134 MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKF------TDKKKLRKT---KQHLKHRF---- 200 (1068)
Q Consensus 134 mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlv------k~~k~l~~v---kk~Lk~~~---- 200 (1068)
+-.++..+|..|++||+.+|+..+|..+|+.+-..|+. +|+|+||||.. .+.+.+..+ +..+..-+
T Consensus 89 vssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~-~~lvinkidrl~~el~lsp~ea~~~l~r~i~~vn~~i~~~~ 167 (887)
T KOG0467|consen 89 VSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLK-PILVINKIDRLITELKLSPQEAYEHLLRVIEQVNGVIGQFL 167 (887)
T ss_pred hhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCc-eEEEEehhhhHHHHHhcChHHHHHHHHHHHHHhhhHHHHhh
Confidence 66677899999999999999999999999987778887 78999999932 233332222 22222111
Q ss_pred -----------------cccccCCCeEEEEecccCCcCCchhhcchH
Q 046721 201 -----------------GTELYHGAKLFKLSGLIQGKYTKKDIGNLA 230 (1068)
Q Consensus 201 -----------------~~e~~~~~kVf~ISAl~g~~y~~~ei~nLl 230 (1068)
.++-+..-.|+..||+.||.+.-.+..++.
T Consensus 168 ~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~ 214 (887)
T KOG0467|consen 168 GGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFY 214 (887)
T ss_pred cchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHH
Confidence 233345667999999999988766655543
No 247
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.85 E-value=1.1e-08 Score=98.28 Aligned_cols=103 Identities=28% Similarity=0.323 Sum_probs=63.5
Q ss_pred EEEEECCCCCChhHHHHHHHhcccc-C----CCCceeccEE--EEeCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTK-L----KVPEVRGPVT--VVSGKKRRLQFVECPND--INGM-IDCAKFADLALLL 147 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~-~----~~~tt~~~It--i~~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlV 147 (1068)
.|+|+|.+|+||||||++|++.... . ......-.+. ........+.|+|++|. +... ...+..+|++|||
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 4899999999999999999987533 1 1111111111 22233556899999994 2221 2237899999999
Q ss_pred EeCCCCCchhH-HHHHHHHHh-----CCCCcEEEEEeCCC
Q 046721 148 IDASHGFEMET-FEFLNLMQN-----HGLPNVMGVLTHLD 181 (1068)
Q Consensus 148 IDas~g~e~~t-~eiL~~L~~-----~GlP~vIvVLNKiD 181 (1068)
+|++....-+. ..++..+.. ..+| +|+|.||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIP-IILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSE-EEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCC-EEEEEeccC
Confidence 99986432222 233333322 3477 899999998
No 248
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.83 E-value=5.2e-08 Score=106.19 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=70.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc-cccCCCCceeccEE--E-EeCCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPVT--V-VSGKKRRLQFVECPND--INGMID-CAKFADLALLLI 148 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~It--i-~~~~k~rl~fIDtPGd--l~smld-~akvADlVLlVI 148 (1068)
-..|+|||.++||||+|+++++.. +.....+|....++ + +.+....+.|+||+|. +..+.. .++.||++|||+
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVy 92 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCF 92 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEE
Confidence 357999999999999999999875 33333333222222 1 2234678999999993 445433 568999999999
Q ss_pred eCCCCCchhH--HHHHHHHHh--CCCCcEEEEEeCCCcCC
Q 046721 149 DASHGFEMET--FEFLNLMQN--HGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 149 Das~g~e~~t--~eiL~~L~~--~GlP~vIvVLNKiDlvk 184 (1068)
|.+..-.-+. ...+..+.. .+.| +|+|.||+|+..
T Consensus 93 Dit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~ 131 (232)
T cd04174 93 DISRPETVDSALKKWKAEIMDYCPSTR-ILLIGCKTDLRT 131 (232)
T ss_pred ECCChHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccccc
Confidence 9985432221 112233332 3566 899999999853
No 249
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.82 E-value=5.4e-08 Score=101.55 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=69.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhc-cccCCCCceeccEE--EE-eCCCeeEEEEeCCC--ChhHHH-HHHHhcCEEEEEEe
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPVT--VV-SGKKRRLQFVECPN--DINGMI-DCAKFADLALLLID 149 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~It--i~-~~~k~rl~fIDtPG--dl~sml-d~akvADlVLlVID 149 (1068)
..|+|+|.+++|||+|+.+++.. +......|....+. +. .+...++.|+||+| .+.++. ...+.||++|||+|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 46899999999999999999965 32222333222121 11 23457889999999 344433 35689999999999
Q ss_pred CCCCCchhH--HHHHHHHHh--CCCCcEEEEEeCCCcCC
Q 046721 150 ASHGFEMET--FEFLNLMQN--HGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 150 as~g~e~~t--~eiL~~L~~--~GlP~vIvVLNKiDlvk 184 (1068)
.+..-.-+. ...+..+.. .++| +|+|.||+|+..
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~ 119 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVP-IVLVGTKLDLRD 119 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhhcc
Confidence 975332111 122333332 3566 899999999964
No 250
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.82 E-value=6.2e-08 Score=113.27 Aligned_cols=76 Identities=18% Similarity=0.187 Sum_probs=54.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc--cCCCCceeccEE-EEe---------------------C---CCeeEEEEeCC
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT--KLKVPEVRGPVT-VVS---------------------G---KKRRLQFVECP 128 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~--~~~~~tt~~~It-i~~---------------------~---~k~rl~fIDtP 128 (1068)
|..|+|||+||+|||||+|+|++... ...+.+|..++. +.. . ...+++|+|+|
T Consensus 1 ~~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 1 MITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 45799999999999999999998743 223444433332 111 0 12568899999
Q ss_pred CC---------hh-HHHHHHHhcCEEEEEEeCC
Q 046721 129 ND---------IN-GMIDCAKFADLALLLIDAS 151 (1068)
Q Consensus 129 Gd---------l~-smld~akvADlVLlVIDas 151 (1068)
|- +. .+++.++.||++|+|+|++
T Consensus 81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 92 22 4788899999999999997
No 251
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.82 E-value=1.2e-07 Score=104.54 Aligned_cols=112 Identities=19% Similarity=0.196 Sum_probs=73.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccc---cCCCCceeccEEE-EeCCCeeEEEEeCCCChh---------HHHHH--
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYT---KLKVPEVRGPVTV-VSGKKRRLQFVECPNDIN---------GMIDC-- 137 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~---~~~~~tt~~~Iti-~~~~k~rl~fIDtPGdl~---------smld~-- 137 (1068)
..++..|+|+|.+|+|||||+|+|++... +....++...... ......+++||||||-.. .++..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 35678999999999999999999999742 2222223222211 223467899999999211 12222
Q ss_pred --H--HhcCEEEEEEeCC-CCCchhHHHHHHHHHh-CCC---CcEEEEEeCCCcCC
Q 046721 138 --A--KFADLALLLIDAS-HGFEMETFEFLNLMQN-HGL---PNVMGVLTHLDKFT 184 (1068)
Q Consensus 138 --a--kvADlVLlVIDas-~g~e~~t~eiL~~L~~-~Gl---P~vIvVLNKiDlvk 184 (1068)
+ ...|+||+|...+ ..+...+..++..+.. .|. .++|+|+||+|...
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 2 2578999997665 2455555567776654 352 36999999999974
No 252
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.81 E-value=1.6e-08 Score=105.90 Aligned_cols=107 Identities=21% Similarity=0.347 Sum_probs=65.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEe--CCCeeEEEEeCCCC--hhH-HHHH---HHhcCEEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVS--GKKRRLQFVECPND--ING-MIDC---AKFADLALLLI 148 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~--~~k~rl~fIDtPGd--l~s-mld~---akvADlVLlVI 148 (1068)
..|.++|++|+|||+|+..|+......++......++... ..+..+.+||+||. +.. +++. ...|-.|||||
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvv 83 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVV 83 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEE
Confidence 4789999999999999999998743222222222222211 34678999999993 433 5665 78899999999
Q ss_pred eCCCCCchh---H----HHHHHHHHh-CCCCcEEEEEeCCCcCC
Q 046721 149 DASHGFEME---T----FEFLNLMQN-HGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 149 Das~g~e~~---t----~eiL~~L~~-~GlP~vIvVLNKiDlvk 184 (1068)
|++. +..+ . ..+|..... ...+++++++||.|++.
T Consensus 84 DSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 84 DSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp ETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred eCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 9974 2211 1 133443331 23345999999999985
No 253
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.81 E-value=4.1e-08 Score=102.41 Aligned_cols=107 Identities=22% Similarity=0.283 Sum_probs=68.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhc-cccCCCCceeccEE--E-EeCCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEe
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPVT--V-VSGKKRRLQFVECPND--INGMID-CAKFADLALLLID 149 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~It--i-~~~~k~rl~fIDtPGd--l~smld-~akvADlVLlVID 149 (1068)
..|+++|.++||||||++++++. +.....+|....+. + +.+....+.++||+|. +..+.. ..+.||++|+|+|
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfd 81 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFD 81 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEE
Confidence 36899999999999999999876 33232333221121 1 1234567899999994 333333 4689999999999
Q ss_pred CCCCCchhH--HHHHHHHHh--CCCCcEEEEEeCCCcCC
Q 046721 150 ASHGFEMET--FEFLNLMQN--HGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 150 as~g~e~~t--~eiL~~L~~--~GlP~vIvVLNKiDlvk 184 (1068)
.+..-+-+. ...+..+.. ...| +|+|.||+|+..
T Consensus 82 it~~~Sf~~~~~~w~~~i~~~~~~~~-iilVgnK~DL~~ 119 (178)
T cd04131 82 ISRPETLDSVLKKWRGEIQEFCPNTK-VLLVGCKTDLRT 119 (178)
T ss_pred CCChhhHHHHHHHHHHHHHHHCCCCC-EEEEEEChhhhc
Confidence 975432222 122333332 2455 899999999854
No 254
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.80 E-value=5e-08 Score=102.28 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=70.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE--E-EeCCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT--V-VSGKKRRLQFVECPND--INGMID-CAKFADLALLLI 148 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It--i-~~~~k~rl~fIDtPGd--l~smld-~akvADlVLlVI 148 (1068)
-..|++||.++||||||+++++... .....+|....++ + +.+....+.++||+|. +..+.. ..+.||++|||+
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvy 84 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF 84 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEE
Confidence 3579999999999999999998763 2222333222222 2 1233568999999994 444433 458899999999
Q ss_pred eCCCCCchhH--HHHHHHHHh--CCCCcEEEEEeCCCcCC
Q 046721 149 DASHGFEMET--FEFLNLMQN--HGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 149 Das~g~e~~t--~eiL~~L~~--~GlP~vIvVLNKiDlvk 184 (1068)
|.+....-+. ...+..+.. .+.| +|+|.||+|+..
T Consensus 85 Dit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~ 123 (182)
T cd04172 85 DISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRT 123 (182)
T ss_pred ECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEeEChhhhc
Confidence 9986432222 122333332 2455 899999999853
No 255
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.79 E-value=9.3e-08 Score=109.12 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=92.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhcccc-----------C-CC-------------C--ceeccEEEEe---------
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYTK-----------L-KV-------------P--EVRGPVTVVS--------- 116 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~-----------~-~~-------------~--tt~~~Iti~~--------- 116 (1068)
.+.|.+|+|.|+||+|||||++.|...... . .. . .....+.+.+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 366899999999999999999998764210 0 00 0 0001112211
Q ss_pred -------------CCCeeEEEEeCCCChhHHHHHHHhcCEEEEEEeCCCCCchhHHH--HHHHHHhCCCCcEEEEEeCCC
Q 046721 117 -------------GKKRRLQFVECPNDINGMIDCAKFADLALLLIDASHGFEMETFE--FLNLMQNHGLPNVMGVLTHLD 181 (1068)
Q Consensus 117 -------------~~k~rl~fIDtPGdl~smld~akvADlVLlVIDas~g~e~~t~e--iL~~L~~~GlP~vIvVLNKiD 181 (1068)
..+..++||||+|.-.+-.+.+..||++|+|++...|.+.+... ++.. . -|+|+||+|
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~------a-DIiVVNKaD 205 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSETAVAGMVDFFLLLQLPGAGDELQGIKKGIMEL------A-DLIVINKAD 205 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchhHHHHhCCEEEEEecCCchHHHHHHHhhhhhh------h-heEEeehhc
Confidence 12457999999997666566788999999998754444333221 2222 2 278999999
Q ss_pred cCCcHHHHHHHHHHHHHHhcccc----cCCCeEEEEecccCCcCCchhhcchHHHHHH
Q 046721 182 KFTDKKKLRKTKQHLKHRFGTEL----YHGAKLFKLSGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 182 lvk~~k~l~~vkk~Lk~~~~~e~----~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
+.+.. ........++..+.... ....+|+++||+++ .++..|...|..
T Consensus 206 l~~~~-~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g-----~GIdeL~~~I~~ 257 (332)
T PRK09435 206 GDNKT-AARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEG-----EGIDEIWQAIED 257 (332)
T ss_pred ccchh-HHHHHHHHHHHHHhcccccccCCCCCEEEEECCCC-----CCHHHHHHHHHH
Confidence 98632 33444455554442111 12368999999865 566666655543
No 256
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.78 E-value=6.7e-08 Score=101.07 Aligned_cols=148 Identities=15% Similarity=0.164 Sum_probs=84.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhc-cccCCCCceeccEE--EE-eCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEEEe
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPVT--VV-SGKKRRLQFVECPND--INGMI-DCAKFADLALLLID 149 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~It--i~-~~~k~rl~fIDtPGd--l~sml-d~akvADlVLlVID 149 (1068)
..|+|+|++++|||||+++|+.. +......+....+. +. .+....+.++||||. +..+. ..+..+|++|+|+|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 36899999999999999999843 32221112111111 11 222456789999983 22211 24578999999999
Q ss_pred CCCCCchhH--HHHHHHHHhC--CCCcEEEEEeCCCcCCcHHH---------H-HHHHHHHHHHhcccccCCCeEEEEec
Q 046721 150 ASHGFEMET--FEFLNLMQNH--GLPNVMGVLTHLDKFTDKKK---------L-RKTKQHLKHRFGTELYHGAKLFKLSG 215 (1068)
Q Consensus 150 as~g~e~~t--~eiL~~L~~~--GlP~vIvVLNKiDlvk~~k~---------l-~~vkk~Lk~~~~~e~~~~~kVf~ISA 215 (1068)
.+..-.-.. ...+..+... .+| +|+|.||+|+...... . ....+.+.+.+ ....+|.+||
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~e~Sa 155 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYCPNVP-VILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEI-----GAKKYMECSA 155 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHh-----CCcEEEEccC
Confidence 864322111 1234444322 466 8999999998531100 0 00111121221 2347899999
Q ss_pred ccCCcCCchhhcchHHHHHH
Q 046721 216 LIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 216 l~g~~y~~~ei~nLlR~I~~ 235 (1068)
++| ..+..+...+..
T Consensus 156 ~~~-----~~v~~~f~~l~~ 170 (187)
T cd04129 156 LTG-----EGVDDVFEAATR 170 (187)
T ss_pred CCC-----CCHHHHHHHHHH
Confidence 965 556666666543
No 257
>PTZ00258 GTP-binding protein; Provisional
Probab=98.78 E-value=8.9e-08 Score=111.22 Aligned_cols=76 Identities=18% Similarity=0.155 Sum_probs=57.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCC-----------------CeeEEEEeCCCC-----
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGK-----------------KRRLQFVECPND----- 130 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~-----------------k~rl~fIDtPGd----- 130 (1068)
...|+|||.||+|||||+|+|++.. +...+.+|..+.. ++... ..++.|+||||-
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~ 100 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGAS 100 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCc
Confidence 4589999999999999999999874 3445666655544 33222 235999999992
Q ss_pred ----hh-HHHHHHHhcCEEEEEEeCC
Q 046721 131 ----IN-GMIDCAKFADLALLLIDAS 151 (1068)
Q Consensus 131 ----l~-smld~akvADlVLlVIDas 151 (1068)
+. .+++.++.||++|+|||+.
T Consensus 101 ~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 101 EGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred chhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 22 4788899999999999984
No 258
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.77 E-value=1.2e-07 Score=96.96 Aligned_cols=142 Identities=13% Similarity=0.217 Sum_probs=82.6
Q ss_pred EEEEECCCCCChhHHHHHHHhc-cccCCCCceeccEE--EEe-CCCeeEEEEeCCCChhHHHHHHHhcCEEEEEEeCCCC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPVT--VVS-GKKRRLQFVECPNDINGMIDCAKFADLALLLIDASHG 153 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~It--i~~-~~k~rl~fIDtPGdl~smld~akvADlVLlVIDas~g 153 (1068)
.|+|||.++||||||+.+++.. +..... ++.+.+. +.. +....+.++||+|.-.. ...+.||++|+|+|.+..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~-~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~--~~~~~~~~~ilv~d~~~~ 78 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLES-PEGGRFKKEVLVDGQSHLLLIRDEGGAPDA--QFASWVDAVIFVFSLENE 78 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCC-CCccceEEEEEECCEEEEEEEEECCCCCch--hHHhcCCEEEEEEECCCH
Confidence 5899999999999999987654 322211 1222221 222 23456889999985332 235779999999999864
Q ss_pred CchhH-HHHHHHHHh----CCCCcEEEEEeCCCcCC-cHHHHH-HHHHHHHHHhcccccCCCeEEEEecccCCcCCchhh
Q 046721 154 FEMET-FEFLNLMQN----HGLPNVMGVLTHLDKFT-DKKKLR-KTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDI 226 (1068)
Q Consensus 154 ~e~~t-~eiL~~L~~----~GlP~vIvVLNKiDlvk-~~k~l~-~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei 226 (1068)
-.-+. ...+..+.. .++| +++|.||.|+.. ....+. ...+.+.+. .....+|.+||++| ..+
T Consensus 79 ~sf~~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~~~~v~~~~~~~~~~~-----~~~~~~~e~SAk~~-----~~i 147 (158)
T cd04103 79 ASFQTVYNLYHQLSSYRNISEIP-LILVGTQDAISESNPRVIDDARARQLCAD-----MKRCSYYETCATYG-----LNV 147 (158)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCC-EEEEeeHHHhhhcCCcccCHHHHHHHHHH-----hCCCcEEEEecCCC-----CCH
Confidence 33222 123333332 3456 899999999742 111111 111122211 12468899999966 445
Q ss_pred cchHHHH
Q 046721 227 GNLAEFI 233 (1068)
Q Consensus 227 ~nLlR~I 233 (1068)
..+...+
T Consensus 148 ~~~f~~~ 154 (158)
T cd04103 148 ERVFQEA 154 (158)
T ss_pred HHHHHHH
Confidence 5555444
No 259
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.76 E-value=8.8e-08 Score=104.78 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=51.3
Q ss_pred eeEEEEeCCCCh-----------h----H-HHHHHH-hcCEEEEEEeCCCCCchhH-HHHHHHHHhCCCCcEEEEEeCCC
Q 046721 120 RRLQFVECPNDI-----------N----G-MIDCAK-FADLALLLIDASHGFEMET-FEFLNLMQNHGLPNVMGVLTHLD 181 (1068)
Q Consensus 120 ~rl~fIDtPGdl-----------~----s-mld~ak-vADlVLlVIDas~g~e~~t-~eiL~~L~~~GlP~vIvVLNKiD 181 (1068)
-.++||||||-. . . +..+++ ..++||+|+|++.++..+. .++.+.+...|.| +|+|+||+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~r-ti~ViTK~D 203 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGER-TIGVITKLD 203 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCc-EEEEEECCC
Confidence 479999999932 1 1 222345 4579999999998887766 5888888888888 799999999
Q ss_pred cCCcHH
Q 046721 182 KFTDKK 187 (1068)
Q Consensus 182 lvk~~k 187 (1068)
..+...
T Consensus 204 ~~~~~~ 209 (240)
T smart00053 204 LMDEGT 209 (240)
T ss_pred CCCccH
Confidence 987543
No 260
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.75 E-value=1.1e-07 Score=101.45 Aligned_cols=142 Identities=12% Similarity=0.192 Sum_probs=86.2
Q ss_pred ECCCCCChhHHHHHHHhc-cccCCCCceec---cEEEE-eCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEEEeCCCC
Q 046721 82 QGPPQVGKSLLIKCLIKH-YTKLKVPEVRG---PVTVV-SGKKRRLQFVECPND--INGMI-DCAKFADLALLLIDASHG 153 (1068)
Q Consensus 82 VG~pnvGKSTLIn~L~~~-~~~~~~~tt~~---~Iti~-~~~k~rl~fIDtPGd--l~sml-d~akvADlVLlVIDas~g 153 (1068)
||.++||||||+++++.. .......|... ..++. .....++.|+||+|. +..+. ...+.||++|+|+|++..
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 699999999999999864 22222222211 11122 234678999999993 44443 457899999999999865
Q ss_pred CchhHH-HHHHHHHh--CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchH
Q 046721 154 FEMETF-EFLNLMQN--HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLA 230 (1068)
Q Consensus 154 ~e~~t~-eiL~~L~~--~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLl 230 (1068)
..-+.. ..+..+.. .++| +|+|.||+|+...... .+..+ +... ....+|.+||++| ..+..+.
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v~-~~~~~-~~~~------~~~~~~e~SAk~~-----~~v~~~F 146 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIP-IVLCGNKVDVKDRKVK-AKSIT-FHRK------KNLQYYDISAKSN-----YNFEKPF 146 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccCC-HHHHH-HHHH------cCCEEEEEeCCCC-----CCHHHHH
Confidence 433222 22332332 4677 8999999998531100 11111 1111 2567899999965 5666666
Q ss_pred HHHHHhh
Q 046721 231 EFISVMK 237 (1068)
Q Consensus 231 R~I~~~k 237 (1068)
..|....
T Consensus 147 ~~l~~~i 153 (200)
T smart00176 147 LWLARKL 153 (200)
T ss_pred HHHHHHH
Confidence 6665444
No 261
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=3e-08 Score=112.04 Aligned_cols=218 Identities=21% Similarity=0.263 Sum_probs=134.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc------------------------cc---CCCCcee--ccEE-----EEeCCC
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY------------------------TK---LKVPEVR--GPVT-----VVSGKK 119 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~------------------------~~---~~~~tt~--~~It-----i~~~~k 119 (1068)
..+..+.++|+.++||||+-..|+... .+ .+-...+ +... ..-..+
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 457899999999999999877776521 00 0000111 1111 223457
Q ss_pred eeEEEEeCCCC---hhHHHHHHHhcCEEEEEEeCC-----CCCch--hHHHHHHHHHhCCCCcEEEEEeCCCcCC---cH
Q 046721 120 RRLQFVECPND---INGMIDCAKFADLALLLIDAS-----HGFEM--ETFEFLNLMQNHGLPNVMGVLTHLDKFT---DK 186 (1068)
Q Consensus 120 ~rl~fIDtPGd---l~smld~akvADlVLlVIDas-----~g~e~--~t~eiL~~L~~~GlP~vIvVLNKiDlvk---~~ 186 (1068)
++++++|+||+ .-+|+..+..||+.+||++|. .||+. |+.++..++..+|+.+.|+++||+|-.. ..
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~ 236 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 236 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence 89999999994 336999999999999999995 24544 6778999999999999999999999763 23
Q ss_pred HHHHHHHHHHHHHhcc---cccCCCeEEEEecccCCcCCchhh---------cchHHHHHHhhcccccccccCCeEEEEe
Q 046721 187 KKLRKTKQHLKHRFGT---ELYHGAKLFKLSGLIQGKYTKKDI---------GNLAEFISVMKFHSLSWRTSHPYILVDR 254 (1068)
Q Consensus 187 k~l~~vkk~Lk~~~~~---e~~~~~kVf~ISAl~g~~y~~~ei---------~nLlR~I~~~k~r~l~wR~~rPylLadr 254 (1068)
+...+.+..+..++.. ...+....+++|+++|... .+.. .-++.+|..+ + .+.-+-..|+.+..
T Consensus 237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~-k~~~~s~cpwy~gp~fl~~ld~l-~-~~~R~~~GP~~~pI- 312 (501)
T KOG0459|consen 237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANV-KDRTDSVCPWYKGPIFLEYLDEL-P-HLERILNGPIRCPV- 312 (501)
T ss_pred hhHHHHHHHHHHHHHHhcccCCCCceeeecccccccch-hhcccccCCcccCCccceehhcc-C-cccccCCCCEEeeh-
Confidence 4566677776665541 1125667889999877110 0000 0001111110 0 00001112333221
Q ss_pred EEecCCCccccccCCCCceEEEEEEEEeeeecCCc-EEEEecCCCeeEEeeec
Q 046721 255 FEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGT-KVHIAGAGDYSLAGVTG 306 (1068)
Q Consensus 255 ved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nq-lVhIpG~GdfqIk~I~~ 306 (1068)
...-+..||+ |.|.|..+.+..|| ++.+|..-...|..|-.
T Consensus 313 ----------~~KykdmGTv-v~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~ 354 (501)
T KOG0459|consen 313 ----------ANKYKDMGTV-VGGKVESGSIKKGQQLVVMPNKTNVEVLGIYS 354 (501)
T ss_pred ----------hhhccccceE-EEEEecccceecCCeEEEccCCcceEEEEEec
Confidence 1112235664 89999988886655 77789888777777643
No 262
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.75 E-value=3.6e-08 Score=113.96 Aligned_cols=141 Identities=19% Similarity=0.260 Sum_probs=89.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCCCeeEEEEeCCCCh-------h--HHH---HH
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGKKRRLQFVECPNDI-------N--GMI---DC 137 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~k~rl~fIDtPGdl-------~--sml---d~ 137 (1068)
+++.+.+.|+|.|||||||++|.++... +...+.||++-+. ....+-.+|+++||||-+ + .|. ..
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 4667899999999999999999999874 3445666665333 333557799999999921 1 121 22
Q ss_pred HHhcCEEEEEEeCCC--CCchhH-HHHHHHHHh--CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEE
Q 046721 138 AKFADLALLLIDASH--GFEMET-FEFLNLMQN--HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFK 212 (1068)
Q Consensus 138 akvADlVLlVIDas~--g~e~~t-~eiL~~L~~--~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ 212 (1068)
|..--+||+++|.|+ |.+... ..+...++. .+.| +|+|+||+|...+ +.+..-.+.|.+.+... ...+|+-
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~-~IlvlNK~D~m~~-edL~~~~~~ll~~~~~~--~~v~v~~ 320 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKV-TILVLNKIDAMRP-EDLDQKNQELLQTIIDD--GNVKVVQ 320 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCc-eEEEeecccccCc-cccCHHHHHHHHHHHhc--cCceEEE
Confidence 344456999999984 444322 234444433 3556 7999999999863 33333333332222221 3478999
Q ss_pred Eeccc
Q 046721 213 LSGLI 217 (1068)
Q Consensus 213 ISAl~ 217 (1068)
.|+++
T Consensus 321 tS~~~ 325 (620)
T KOG1490|consen 321 TSCVQ 325 (620)
T ss_pred ecccc
Confidence 99874
No 263
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.74 E-value=1.2e-07 Score=102.85 Aligned_cols=107 Identities=21% Similarity=0.264 Sum_probs=69.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhc-cccCCCCceeccEE--E-EeCCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEe
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPVT--V-VSGKKRRLQFVECPND--INGMID-CAKFADLALLLID 149 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~It--i-~~~~k~rl~fIDtPGd--l~smld-~akvADlVLlVID 149 (1068)
..|+|||.++||||+|+++++.. +.....+|....+. + +.+....+.|+||+|. +..+.. ..+.+|++|||+|
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 46899999999999999999875 33333333322222 2 2234568899999994 444333 4589999999999
Q ss_pred CCCCCchhHH--HHHHHHHh--CCCCcEEEEEeCCCcCC
Q 046721 150 ASHGFEMETF--EFLNLMQN--HGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 150 as~g~e~~t~--eiL~~L~~--~GlP~vIvVLNKiDlvk 184 (1068)
.+..-.-+.. .+...+.. .++| +|+|.||+|+..
T Consensus 82 is~~~Sf~~i~~~w~~~~~~~~~~~p-iiLVgnK~DL~~ 119 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQEFCPNAK-VVLVGCKLDMRT 119 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEECccccc
Confidence 9864222111 12222222 4567 899999999865
No 264
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.74 E-value=6.3e-08 Score=111.46 Aligned_cols=142 Identities=16% Similarity=0.189 Sum_probs=82.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc-------ccCCCCceeccEEEEeCCCeeEEEEeCCC----Ch--hHHHHH--H
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY-------TKLKVPEVRGPVTVVSGKKRRLQFVECPN----DI--NGMIDC--A 138 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~-------~~~~~~tt~~~Iti~~~~k~rl~fIDtPG----dl--~smld~--a 138 (1068)
..|..|||+|.+|+|||||||+|.|-. ....+.||..+......+--.++|+|.|| .+ ...++. +
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 458899999999999999999997731 11122333333334444445799999999 22 234554 4
Q ss_pred HhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCc-C-----------CcHHHHHHHHHHHHHHhcccccC
Q 046721 139 KFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDK-F-----------TDKKKLRKTKQHLKHRFGTELYH 206 (1068)
Q Consensus 139 kvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDl-v-----------k~~k~l~~vkk~Lk~~~~~e~~~ 206 (1068)
...|++|+|.+ ..+...+..++..++..|.| +.+|-+|+|. + ...+.++.+.+...+.+......
T Consensus 113 ~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~-fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~ 189 (376)
T PF05049_consen 113 YRYDFFIIISS--ERFTENDVQLAKEIQRMGKK-FYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVS 189 (376)
T ss_dssp GG-SEEEEEES--SS--HHHHHHHHHHHHTT-E-EEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-S
T ss_pred cccCEEEEEeC--CCCchhhHHHHHHHHHcCCc-EEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCC
Confidence 67798777664 55777788899999999999 7889999996 1 11122344444445555555667
Q ss_pred CCeEEEEecccC
Q 046721 207 GAKLFKLSGLIQ 218 (1068)
Q Consensus 207 ~~kVf~ISAl~g 218 (1068)
..+||.||+..-
T Consensus 190 ~P~VFLVS~~dl 201 (376)
T PF05049_consen 190 EPQVFLVSSFDL 201 (376)
T ss_dssp S--EEEB-TTTT
T ss_pred cCceEEEeCCCc
Confidence 789999998653
No 265
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.73 E-value=1.6e-07 Score=108.11 Aligned_cols=75 Identities=20% Similarity=0.197 Sum_probs=55.8
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCCC-----------------eeEEEEeCCCC------
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGKK-----------------RRLQFVECPND------ 130 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~k-----------------~rl~fIDtPGd------ 130 (1068)
..|+|||.||+|||||+|+|++.. +...+.+|..+.. ++.... .++.|+|+||-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 479999999999999999999974 3344566655443 222111 36999999992
Q ss_pred ---hh-HHHHHHHhcCEEEEEEeCC
Q 046721 131 ---IN-GMIDCAKFADLALLLIDAS 151 (1068)
Q Consensus 131 ---l~-smld~akvADlVLlVIDas 151 (1068)
+. ..+..++.||++|+|||+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 21 3778889999999999995
No 266
>PRK13768 GTPase; Provisional
Probab=98.70 E-value=2.1e-07 Score=102.74 Aligned_cols=110 Identities=19% Similarity=0.256 Sum_probs=69.1
Q ss_pred eeEEEEeCCCChh---------HHHHHHHh--cCEEEEEEeCCCCCchhHHHHHHHH-----HhCCCCcEEEEEeCCCcC
Q 046721 120 RRLQFVECPNDIN---------GMIDCAKF--ADLALLLIDASHGFEMETFEFLNLM-----QNHGLPNVMGVLTHLDKF 183 (1068)
Q Consensus 120 ~rl~fIDtPGdl~---------smld~akv--ADlVLlVIDas~g~e~~t~eiL~~L-----~~~GlP~vIvVLNKiDlv 183 (1068)
..++++||||... .+++.+.. +++++||+|++.+....+......+ ...++| +|+|+||+|++
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~-~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLP-QIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCC-EEEEEEhHhhc
Confidence 3799999999322 24444444 8999999999877666554333222 146888 78999999998
Q ss_pred CcHHHHHHHHHHHHH------H-----------------hcccccCCCeEEEEecccCCcCCchhhcchHHHHHHh
Q 046721 184 TDKKKLRKTKQHLKH------R-----------------FGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 184 k~~k~l~~vkk~Lk~------~-----------------~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~ 236 (1068)
+.. ......+.+.. . ....+....++|++|+++ ...+..|...|...
T Consensus 176 ~~~-~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~-----~~gl~~L~~~I~~~ 245 (253)
T PRK13768 176 SEE-ELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKT-----GEGFDELYAAIQEV 245 (253)
T ss_pred Cch-hHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCC-----CcCHHHHHHHHHHH
Confidence 642 23333332221 0 011223456899999984 46677777777443
No 267
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.68 E-value=3.8e-07 Score=92.38 Aligned_cols=137 Identities=18% Similarity=0.206 Sum_probs=92.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCC--ChhHHHH-HHHhcCEEEEEEeCCCC
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPN--DINGMID-CAKFADLALLLIDASHG 153 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPG--dl~smld-~akvADlVLlVIDas~g 153 (1068)
..|.|+|+.|+||||++++|.+..+...-+|..-.|.-...+..+++++|..| .+.+... +...+|.+|+|+|++..
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~ 96 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDR 96 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchH
Confidence 67899999999999999999998765554443333443445788999999999 4666554 56889999999999865
Q ss_pred CchhH-HHHHH-HH---HhCCCCcEEEEEeCCCcCC--cHHHHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 154 FEMET-FEFLN-LM---QNHGLPNVMGVLTHLDKFT--DKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 154 ~e~~t-~eiL~-~L---~~~GlP~vIvVLNKiDlvk--~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
.-++. ...|. +| +-.|.| ++++.||.|+.. ....+..+. .|...+ --...+++-+||.+|
T Consensus 97 ~r~~e~~~~L~~lL~eerlaG~~-~Lvlank~dl~~~l~~~~i~~~~-~L~~l~---ks~~~~l~~cs~~tg 163 (185)
T KOG0073|consen 97 MRMQECKQELTELLVEERLAGAP-LLVLANKQDLPGALSLEEISKAL-DLEELA---KSHHWRLVKCSAVTG 163 (185)
T ss_pred HHHHHHHHHHHHHHhhhhhcCCc-eEEEEecCcCccccCHHHHHHhh-CHHHhc---cccCceEEEEecccc
Confidence 54432 22222 22 335777 899999999873 122222111 122222 113678999999876
No 268
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=4.9e-08 Score=115.18 Aligned_cols=106 Identities=23% Similarity=0.389 Sum_probs=83.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc--------------cCCCCc-------eeccEEEEe----CCCeeEEEEeCCCCh
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT--------------KLKVPE-------VRGPVTVVS----GKKRRLQFVECPNDI 131 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~--------------~~~~~t-------t~~~Iti~~----~~k~rl~fIDtPGdl 131 (1068)
++|+++|+-.+|||+|+..|..+.. .....+ ...|+|++. ++.+-++|+||||.+
T Consensus 129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHV 208 (971)
T KOG0468|consen 129 RNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHV 208 (971)
T ss_pred EEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcc
Confidence 6799999999999999999998521 111111 123555433 245668999999954
Q ss_pred h--H-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcC
Q 046721 132 N--G-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKF 183 (1068)
Q Consensus 132 ~--s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlv 183 (1068)
+ . +...+..+|+|++|||+.+|+...++.++..+-...+| +++|+||+|.+
T Consensus 209 nF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~-i~vviNKiDRL 262 (971)
T KOG0468|consen 209 NFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLP-IVVVINKVDRL 262 (971)
T ss_pred cchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCc-EEEEEehhHHH
Confidence 4 3 78888999999999999999999999999988888888 88999999975
No 269
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.67 E-value=5.1e-07 Score=93.38 Aligned_cols=134 Identities=19% Similarity=0.319 Sum_probs=95.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc---cCCCCc--e--eccEEEE-------eCCCeeEEEEeCCCC--hhHHHHH-H
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT---KLKVPE--V--RGPVTVV-------SGKKRRLQFVECPND--INGMIDC-A 138 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~---~~~~~t--t--~~~Iti~-------~~~k~rl~fIDtPGd--l~smld~-a 138 (1068)
...|+|+|+.++||||++++|..... ...... . ..+.|+. ...+..+.+++|||. |.-|++. +
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~ 89 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILS 89 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHh
Confidence 46799999999999999999998641 110000 1 1123332 123578999999994 6668775 5
Q ss_pred HhcCEEEEEEeCCCCCchhHHHHHHHHHhCC-CCcEEEEEeCCCcCC--cHHHHHHHHHHHHHHhcccccCCCeEEEEec
Q 046721 139 KFADLALLLIDASHGFEMETFEFLNLMQNHG-LPNVMGVLTHLDKFT--DKKKLRKTKQHLKHRFGTELYHGAKLFKLSG 215 (1068)
Q Consensus 139 kvADlVLlVIDas~g~e~~t~eiL~~L~~~G-lP~vIvVLNKiDlvk--~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISA 215 (1068)
+.|+.+|+|||++.+.+....++++.+.... +| +++++||.|+.. +.+.+++..+. - . ...++|.++|
T Consensus 90 ~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip-~vVa~NK~DL~~a~ppe~i~e~l~~---~----~-~~~~vi~~~a 160 (187)
T COG2229 90 RGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIP-VVVAINKQDLFDALPPEKIREALKL---E----L-LSVPVIEIDA 160 (187)
T ss_pred CCcceEEEEEecCCCcchHHHHHHHHHhhccCCC-EEEEeeccccCCCCCHHHHHHHHHh---c----c-CCCceeeeec
Confidence 8899999999999988876678888888877 66 899999999985 33444433321 1 1 3678999998
Q ss_pred ccC
Q 046721 216 LIQ 218 (1068)
Q Consensus 216 l~g 218 (1068)
..+
T Consensus 161 ~e~ 163 (187)
T COG2229 161 TEG 163 (187)
T ss_pred ccc
Confidence 743
No 270
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.66 E-value=2.5e-07 Score=98.11 Aligned_cols=106 Identities=23% Similarity=0.197 Sum_probs=65.5
Q ss_pred eEEEEECCCCCChhHHHH-HHHhc------cccCCCCcee--ccEE-----------EEeCCCeeEEEEeCCCChhHHH-
Q 046721 77 YVVVVQGPPQVGKSLLIK-CLIKH------YTKLKVPEVR--GPVT-----------VVSGKKRRLQFVECPNDINGMI- 135 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn-~L~~~------~~~~~~~tt~--~~It-----------i~~~~k~rl~fIDtPGdl~sml- 135 (1068)
..|++||.++||||+|+. .+.+. +.....+|+. .... .+.+...++.|+||+|.-..+.
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~~~~ 82 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDKDRR 82 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhhhhc
Confidence 579999999999999995 55432 1111222221 1111 1223467899999999533221
Q ss_pred HHHHhcCEEEEEEeCCCCCchhHH--HHHHHHHh--CCCCcEEEEEeCCCcC
Q 046721 136 DCAKFADLALLLIDASHGFEMETF--EFLNLMQN--HGLPNVMGVLTHLDKF 183 (1068)
Q Consensus 136 d~akvADlVLlVIDas~g~e~~t~--eiL~~L~~--~GlP~vIvVLNKiDlv 183 (1068)
...+.||++|||+|.+....-+.. ..+..+.. .++| +|+|.||+|+.
T Consensus 83 ~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgNK~DL~ 133 (195)
T cd01873 83 FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVP-VILVGCKLDLR 133 (195)
T ss_pred ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhcc
Confidence 135789999999999864322211 12333332 3566 89999999985
No 271
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.63 E-value=3.8e-07 Score=92.04 Aligned_cols=144 Identities=18% Similarity=0.283 Sum_probs=85.0
Q ss_pred EEEEECCCCCChhHHHHHHHhcc-ccCCCCce---eccEEEEe-CCCeeEEEEeCCCC--hhHHHH-HHHhcCEEEEEEe
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEV---RGPVTVVS-GKKRRLQFVECPND--INGMID-CAKFADLALLLID 149 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt---~~~Iti~~-~~k~rl~fIDtPGd--l~smld-~akvADlVLlVID 149 (1068)
.|+|+|.+++|||||+++|.+.. ......+. ....++.. .....+.++|++|. +..+.. ....+|++|+|.|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 48999999999999999999863 22222221 11111222 34667999999984 344443 3688999999999
Q ss_pred CCCCCchhH-HHHHHHHHh-CC-CCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchh
Q 046721 150 ASHGFEMET-FEFLNLMQN-HG-LPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKD 225 (1068)
Q Consensus 150 as~g~e~~t-~eiL~~L~~-~G-lP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~e 225 (1068)
.+..-.-.. ...+..+.. .. -+++|+|.||.|+..... ......+ +...+ +.+++.+||+.+ ..
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~-~~~~~------~~~~~e~Sa~~~-----~~ 148 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQE-FAKEL------GVPYFEVSAKNG-----EN 148 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHH-HHHHT------TSEEEEEBTTTT-----TT
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHH-HHHHh------CCEEEEEECCCC-----CC
Confidence 875321111 133443333 22 234899999999875211 1112222 22221 488999999854 45
Q ss_pred hcchHHHH
Q 046721 226 IGNLAEFI 233 (1068)
Q Consensus 226 i~nLlR~I 233 (1068)
+.++...+
T Consensus 149 v~~~f~~~ 156 (162)
T PF00071_consen 149 VKEIFQEL 156 (162)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554433
No 272
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.63 E-value=6.9e-07 Score=95.54 Aligned_cols=136 Identities=12% Similarity=0.228 Sum_probs=80.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHH-HhccccCCCCcee---ccEEE-EeCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCL-IKHYTKLKVPEVR---GPVTV-VSGKKRRLQFVECPND--INGMI-DCAKFADLAL 145 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L-~~~~~~~~~~tt~---~~Iti-~~~~k~rl~fIDtPGd--l~sml-d~akvADlVL 145 (1068)
.+...|+++|++|||||||++++ .+........+.. ..+++ .......+.++||+|. +..+. .....+|++|
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i 86 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI 86 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence 45678999999999999999755 4443322222211 11111 1234678899999994 43333 3456899999
Q ss_pred EEEeCCCCCchhHH-HHHHHHH--hCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 146 LLIDASHGFEMETF-EFLNLMQ--NHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 146 lVIDas~g~e~~t~-eiL~~L~--~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
+|+|.+....-... ..+..+. ...+| +++|.||+|+.... ......... .. .+..++.+||+++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-i~lv~nK~Dl~~~~-~~~~~~~~~-~~------~~~~~~e~Sa~~~ 153 (215)
T PTZ00132 87 IMFDVTSRITYKNVPNWHRDIVRVCENIP-IVLVGNKVDVKDRQ-VKARQITFH-RK------KNLQYYDISAKSN 153 (215)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccCcccc-CCHHHHHHH-HH------cCCEEEEEeCCCC
Confidence 99999864432221 2222222 13566 78899999986421 111111111 11 2457899999876
No 273
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.62 E-value=8.5e-07 Score=94.78 Aligned_cols=106 Identities=18% Similarity=0.168 Sum_probs=68.0
Q ss_pred EEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE--EEe-------CCCeeEEEEeCCCC--hhHHHH-HHHhcCEE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT--VVS-------GKKRRLQFVECPND--INGMID-CAKFADLA 144 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It--i~~-------~~k~rl~fIDtPGd--l~smld-~akvADlV 144 (1068)
.|+++|.++||||||+++++... ......|....+. .+. +....+.|+||+|. +.++.. ..+.+|++
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~i 81 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGI 81 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEE
Confidence 58999999999999999999863 2222222211111 111 13457899999993 555443 46889999
Q ss_pred EEEEeCCCCCchhHH-HHHHHHHh----------------------CCCCcEEEEEeCCCcCC
Q 046721 145 LLLIDASHGFEMETF-EFLNLMQN----------------------HGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 145 LlVIDas~g~e~~t~-eiL~~L~~----------------------~GlP~vIvVLNKiDlvk 184 (1068)
|+|+|.+..-.-+.. ..+..+.. .++| +|+|.||+|+..
T Consensus 82 IlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~P-iilVGnK~Dl~~ 143 (202)
T cd04102 82 ILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIP-LLVIGTKLDQIP 143 (202)
T ss_pred EEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCce-EEEEEECccchh
Confidence 999999865332221 12222211 2466 899999999975
No 274
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.58 E-value=4.2e-07 Score=102.32 Aligned_cols=110 Identities=19% Similarity=0.213 Sum_probs=71.5
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccc---cCCCCceeccEEE-EeCCCeeEEEEeCCCChh------HHHHHHH-----
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYT---KLKVPEVRGPVTV-VSGKKRRLQFVECPNDIN------GMIDCAK----- 139 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~---~~~~~tt~~~Iti-~~~~k~rl~fIDtPGdl~------smld~ak----- 139 (1068)
....|+|+|.+|+|||||+|+|++... +....++..++.+ ....+.++.+|||||-.. ..+..++
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~ 116 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLG 116 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhc
Confidence 457899999999999999999999743 2222222222221 123578999999999321 1333333
Q ss_pred -hcCEEEEEEeCC-CCCchhHHHHHHHHHhC-C---CCcEEEEEeCCCcCC
Q 046721 140 -FADLALLLIDAS-HGFEMETFEFLNLMQNH-G---LPNVMGVLTHLDKFT 184 (1068)
Q Consensus 140 -vADlVLlVIDas-~g~e~~t~eiL~~L~~~-G---lP~vIvVLNKiDlvk 184 (1068)
..|+||||+..+ ..++..+..++..++.. | ..++|+|+||.|...
T Consensus 117 ~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 117 KTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred CCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 589999995443 23555555666655542 3 235899999999874
No 275
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.54 E-value=1.2e-06 Score=94.05 Aligned_cols=108 Identities=21% Similarity=0.261 Sum_probs=69.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCC----CceeccEE-EEeCCCeeEEEEeCCCCh----------hHHHHHH---
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKV----PEVRGPVT-VVSGKKRRLQFVECPNDI----------NGMIDCA--- 138 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~----~tt~~~It-i~~~~k~rl~fIDtPGdl----------~smld~a--- 138 (1068)
..|.++|.+|+||||++|.|++....... ..+..... .....++.+++|||||-+ ..+.+++
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 36899999999999999999997532211 11111111 123457899999999921 1133322
Q ss_pred -HhcCEEEEEEeCCCCCchhHHHHHHHHHh-CC---CCcEEEEEeCCCcCCc
Q 046721 139 -KFADLALLLIDASHGFEMETFEFLNLMQN-HG---LPNVMGVLTHLDKFTD 185 (1068)
Q Consensus 139 -kvADlVLlVIDas~g~e~~t~eiL~~L~~-~G---lP~vIvVLNKiDlvk~ 185 (1068)
...+++|||+... .++......+..+.. .| ..++|+|+|+.|...+
T Consensus 81 ~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~ 131 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED 131 (212)
T ss_dssp TT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT
T ss_pred cCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc
Confidence 3579999999998 787777776666554 23 3579999999998864
No 276
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=2.1e-06 Score=89.44 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=98.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCCCceeccEE------EEeCCCeeEEEEeCCC--ChhHHH-HHHHhcCEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVT------VVSGKKRRLQFVECPN--DINGMI-DCAKFADLALLL 147 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~It------i~~~~k~rl~fIDtPG--dl~sml-d~akvADlVLlV 147 (1068)
..|+++|-.+||||+||++.....-..+.+.|-| |- .+.+...+++++||.| .|.+++ ...+.|.++|+|
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~YqATIG-iDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviV 101 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIG-IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 101 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcccccceee-eEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEE
Confidence 5699999999999999999988743334443333 22 1234578999999999 577755 457999999999
Q ss_pred EeCCC--CCchhHHHHHHHHHhCCC--CcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 148 IDASH--GFEMETFEFLNLMQNHGL--PNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 148 IDas~--g~e~~t~eiL~~L~~~Gl--P~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
.|.+. .|+....++-....+.|- ..+++|-||.||..+..-...--......+ ++-++.+||+.|
T Consensus 102 yDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel------~a~f~etsak~g----- 170 (221)
T KOG0094|consen 102 YDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKEL------NAEFIETSAKAG----- 170 (221)
T ss_pred EeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHh------CcEEEEecccCC-----
Confidence 99974 344333445455555554 346778899999974321111111111111 556788899866
Q ss_pred hhhcchHHHHHHhhccc
Q 046721 224 KDIGNLAEFISVMKFHS 240 (1068)
Q Consensus 224 ~ei~nLlR~I~~~k~r~ 240 (1068)
..+..|.|-|....+..
T Consensus 171 ~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 171 ENVKQLFRRIAAALPGM 187 (221)
T ss_pred CCHHHHHHHHHHhccCc
Confidence 44555666676665543
No 277
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=6.6e-07 Score=100.17 Aligned_cols=201 Identities=20% Similarity=0.223 Sum_probs=121.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc-----cC------CCCcee----ccEE-----------EEe------------CC
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT-----KL------KVPEVR----GPVT-----------VVS------------GK 118 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~-----~~------~~~tt~----~~It-----------i~~------------~~ 118 (1068)
..|||+|-.++|||||+..|+...- .+ .+++.+ ..|. ++. ..
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 5799999999999999998876310 00 001100 0010 000 01
Q ss_pred CeeEEEEeCCCCh---hHHHHHH--HhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHH
Q 046721 119 KRRLQFVECPNDI---NGMIDCA--KFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTK 193 (1068)
Q Consensus 119 k~rl~fIDtPGdl---~smld~a--kvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vk 193 (1068)
..-++|||..|+- ..++-.+ -..|.++||++|..|+...+.++|.++.+..+| .+++++|+|++.+ ..++++.
T Consensus 248 SKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iP-fFvlvtK~Dl~~~-~~~~~tv 325 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIP-FFVLVTKMDLVDR-QGLKKTV 325 (591)
T ss_pred cceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCC-eEEEEEeeccccc-hhHHHHH
Confidence 2358999999942 2244433 346899999999999999999999999999999 7889999999974 4456666
Q ss_pred HHHHHHhcc-----------------------cccCCCeEEEEecccCCcCCchhhcchHHHHHHhhccccccc------
Q 046721 194 QHLKHRFGT-----------------------ELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWR------ 244 (1068)
Q Consensus 194 k~Lk~~~~~-----------------------e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR------ 244 (1068)
+.|...+.. ....-.+||.+|+..| +-.+|++.+.........-.
T Consensus 326 ~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsG------egl~ll~~fLn~Lsp~~~~~e~~~L~ 399 (591)
T KOG1143|consen 326 KDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSG------EGLRLLRTFLNCLSPAGTAEERIQLV 399 (591)
T ss_pred HHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCc------cchhHHHHHHhhcCCcCChHHHHHHh
Confidence 665544321 1234678999998765 33455544433332211111
Q ss_pred ccCCeEEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecC
Q 046721 245 TSHPYILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGA 296 (1068)
Q Consensus 245 ~~rPylLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~ 296 (1068)
......-++.+..+++ .|. +|.|.+..+.|..|.-+.|--.
T Consensus 400 q~~~eFqvdEiy~Vp~----------VG~-VVGG~Ls~G~l~Eg~~~~vGP~ 440 (591)
T KOG1143|consen 400 QLPAEFQVDEIYNVPH----------VGQ-VVGGMLSEGQLHEGADVLVGPM 440 (591)
T ss_pred cCcceeeHhHeecCCc----------ccc-cccceeeeceeccCceeEeecC
Confidence 0112222333333321 344 3677777777777776665433
No 278
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.50 E-value=1.7e-06 Score=96.83 Aligned_cols=207 Identities=18% Similarity=0.231 Sum_probs=128.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc-------------------ccCCCCceeccEE----------------------
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY-------------------TKLKVPEVRGPVT---------------------- 113 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~-------------------~~~~~~tt~~~It---------------------- 113 (1068)
--..|||||..++|||||+..|+... .+.........|.
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 34689999999999999998887521 0000000000000
Q ss_pred -EEeCCCeeEEEEeCCCC---hhHHHH--HHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHH
Q 046721 114 -VVSGKKRRLQFVECPND---INGMID--CAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKK 187 (1068)
Q Consensus 114 -i~~~~k~rl~fIDtPGd---l~smld--~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k 187 (1068)
|......-++|||..|. +..++= .-...|+.+|+|-++.|+---+.++|.+..+..+| |++|++|||.+. ..
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VP-VfvVVTKIDMCP-AN 289 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVP-VFVVVTKIDMCP-AN 289 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCc-EEEEEEeeccCc-HH
Confidence 11111335899999983 222111 12567999999999999888889999999999999 899999999986 45
Q ss_pred HHHHHHHHHHHHhcc---------------------ccc--CCCeEEEEecccCCcCCchhhcchHHHHHHhhccccccc
Q 046721 188 KLRKTKQHLKHRFGT---------------------ELY--HGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWR 244 (1068)
Q Consensus 188 ~l~~vkk~Lk~~~~~---------------------e~~--~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR 244 (1068)
.+.+..+.|...+.+ .|+ .-++||.+|..+| +...|++.+.........++
T Consensus 290 iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG------~NL~LLkmFLNlls~R~~~~ 363 (641)
T KOG0463|consen 290 ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTG------TNLPLLKMFLNLLSLRRQLN 363 (641)
T ss_pred HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccC------CChHHHHHHHhhcCcccccc
Confidence 667777666555432 111 2467888887655 23445555545544333445
Q ss_pred ccCCe-EEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEE-e-cCCCee
Q 046721 245 TSHPY-ILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHI-A-GAGDYS 300 (1068)
Q Consensus 245 ~~rPy-lLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhI-p-G~Gdfq 300 (1068)
.+.|- .-++.+-+++ +.||+ |+|.+-.+.++-|+...+ | ..|+|.
T Consensus 364 E~~PAeFQIDD~Y~Vp----------GVGTv-vSGT~L~GtIrLND~LlLGPd~~G~F~ 411 (641)
T KOG0463|consen 364 ENDPAEFQIDDIYWVP----------GVGTV-VSGTLLSGTIRLNDILLLGPDSNGDFM 411 (641)
T ss_pred cCCCcceeecceEecC----------CcceE-eecceeeeeEEeccEEEecCCCCCCee
Confidence 55553 3334444442 35665 666655555677776554 2 257775
No 279
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.49 E-value=2.3e-07 Score=103.44 Aligned_cols=73 Identities=19% Similarity=0.214 Sum_probs=53.8
Q ss_pred EEEECCCCCChhHHHHHHHhccc--cCCCCceeccEE-EEeCCC-----------------eeEEEEeCCCC--------
Q 046721 79 VVVQGPPQVGKSLLIKCLIKHYT--KLKVPEVRGPVT-VVSGKK-----------------RRLQFVECPND-------- 130 (1068)
Q Consensus 79 VaVVG~pnvGKSTLIn~L~~~~~--~~~~~tt~~~It-i~~~~k-----------------~rl~fIDtPGd-------- 130 (1068)
|+|||+||+|||||+|+|++... ...+.+|..+.. ++.... .++.|+|+||-
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 68999999999999999999743 334555544443 222111 25999999992
Q ss_pred -hh-HHHHHHHhcCEEEEEEeCC
Q 046721 131 -IN-GMIDCAKFADLALLLIDAS 151 (1068)
Q Consensus 131 -l~-smld~akvADlVLlVIDas 151 (1068)
+. ..++.++.||++|+|||+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 22 4788889999999999985
No 280
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=6.4e-07 Score=91.59 Aligned_cols=139 Identities=17% Similarity=0.187 Sum_probs=88.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccC-------CCCceeccEE-EEeCCCeeEEEEeCCC--ChhHHHHH-HHhcCEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKL-------KVPEVRGPVT-VVSGKKRRLQFVECPN--DINGMIDC-AKFADLAL 145 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~-------~~~tt~~~It-i~~~~k~rl~fIDtPG--dl~smld~-akvADlVL 145 (1068)
..|.|+|+.|+||||++-++-..++.. .+.+|-+..+ .+...+.++.|+|.-| .+.++.+. ...|.+|+
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii 97 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGII 97 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeE
Confidence 468899999999999999887765321 1112222111 1222378999999998 57788775 58899999
Q ss_pred EEEeCCC--CCchhHHH---HHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 146 LLIDASH--GFEMETFE---FLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 146 lVIDas~--g~e~~t~e---iL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
+||||+. .++..... ++.-=..+|.| +++.+||-|+-. .....++...+.. ....--....+.||||++|
T Consensus 98 ~viDa~~~eR~~~~~t~~~~v~~~E~leg~p-~L~lankqd~q~-~~~~~El~~~~~~-~e~~~~rd~~~~pvSal~g 172 (197)
T KOG0076|consen 98 YVIDATDRERFEESKTAFEKVVENEKLEGAP-VLVLANKQDLQN-AMEAAELDGVFGL-AELIPRRDNPFQPVSALTG 172 (197)
T ss_pred EeecCCCHHHHHHHHHHHHHHHHHHHhcCCc-hhhhcchhhhhh-hhhHHHHHHHhhh-hhhcCCccCccccchhhhc
Confidence 9999985 23333322 22222337999 788999999864 2223333332221 1111225678899999977
No 281
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=2.8e-06 Score=89.74 Aligned_cols=135 Identities=19% Similarity=0.256 Sum_probs=87.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCCCceecc---E-EE-EeCCCeeEEEEeCCC--ChhHHHH-HHHhcCEEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGP---V-TV-VSGKKRRLQFVECPN--DINGMID-CAKFADLALLLI 148 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~---I-ti-~~~~k~rl~fIDtPG--dl~smld-~akvADlVLlVI 148 (1068)
..|.+||-++||||.|+-++....-......|-|. + |+ ..+.+..+++|||.| .+..+.+ +++.|+.|+||+
T Consensus 13 ~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~Lvy 92 (207)
T KOG0078|consen 13 FKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 92 (207)
T ss_pred EEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEE
Confidence 67999999999999999888876322222222221 1 12 224577899999999 4666555 569999999999
Q ss_pred eCCCCCchhH-HHHHHHHHhC---CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 149 DASHGFEMET-FEFLNLMQNH---GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 149 Das~g~e~~t-~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
|.+...+=+. ...+..+..+ ++| .|+|-||+|+.....--...-+.|-..+ +.++|.+||++|
T Consensus 93 Ditne~Sfeni~~W~~~I~e~a~~~v~-~~LvGNK~D~~~~R~V~~e~ge~lA~e~------G~~F~EtSAk~~ 159 (207)
T KOG0078|consen 93 DITNEKSFENIRNWIKNIDEHASDDVV-KILVGNKCDLEEKRQVSKERGEALAREY------GIKFFETSAKTN 159 (207)
T ss_pred EccchHHHHHHHHHHHHHHhhCCCCCc-EEEeeccccccccccccHHHHHHHHHHh------CCeEEEccccCC
Confidence 9975322111 1244445444 667 7899999999752211122222222222 899999999976
No 282
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.44 E-value=1.7e-06 Score=92.03 Aligned_cols=109 Identities=21% Similarity=0.305 Sum_probs=74.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCCCceec-cE---EEEe-CCCeeEEEEeCCC--ChhHHH-HHHHhcCEEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRG-PV---TVVS-GKKRRLQFVECPN--DINGMI-DCAKFADLALLLI 148 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~-~I---ti~~-~~k~rl~fIDtPG--dl~sml-d~akvADlVLlVI 148 (1068)
..|+|+|.+|+|||||+++|++.........+.+ .+ ++.. .....+.++||+| .+.++. .....++.+++++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 6899999999999999999999854432221111 11 1111 1256688999999 455655 4558999999999
Q ss_pred eCCC--CCchhHHHHHHHHHhC---CCCcEEEEEeCCCcCCcH
Q 046721 149 DASH--GFEMETFEFLNLMQNH---GLPNVMGVLTHLDKFTDK 186 (1068)
Q Consensus 149 Das~--g~e~~t~eiL~~L~~~---GlP~vIvVLNKiDlvk~~ 186 (1068)
|.+. .........+..+... +.| +|+|.||+|+....
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~ 127 (219)
T COG1100 86 DSTLRESSDELTEEWLEELRELAPDDVP-ILLVGNKIDLFDEQ 127 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHhCCCCce-EEEEecccccccch
Confidence 9874 3333444555555543 466 89999999998643
No 283
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.43 E-value=1.2e-06 Score=93.51 Aligned_cols=145 Identities=19% Similarity=0.205 Sum_probs=79.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcccc-C-----------CCCc-----eeccEE-EEeC-------------------
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTK-L-----------KVPE-----VRGPVT-VVSG------------------- 117 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~-~-----------~~~t-----t~~~It-i~~~------------------- 117 (1068)
-|++|+|+|++|+|||||++.|+..... . .... ....+. +..+
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 4789999999999999999999875211 0 0000 000111 1000
Q ss_pred CCeeEEEEeCCCChhHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcH-HHHHHHHHHH
Q 046721 118 KKRRLQFVECPNDINGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDK-KKLRKTKQHL 196 (1068)
Q Consensus 118 ~k~rl~fIDtPGdl~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~-k~l~~vkk~L 196 (1068)
....++||+|.|.+....+..-..++.+.|+|+..+.. ..+......+.| .++|+||+|+.... ..+......+
T Consensus 101 ~~~d~IiIEt~G~l~~~~~~~~~~~~~i~Vvd~~~~d~----~~~~~~~~~~~a-~iiv~NK~Dl~~~~~~~~~~~~~~l 175 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCPADFDLGEHMRVVLLSVTEGDD----KPLKYPGMFKEA-DLIVINKADLAEAVGFDVEKMKADA 175 (207)
T ss_pred CCCCEEEEecCCCcCCCcccccccCeEEEEEecCcccc----hhhhhHhHHhhC-CEEEEEHHHccccchhhHHHHHHHH
Confidence 12356666666633221111223455556777654332 112222224556 58899999998531 2233444444
Q ss_pred HHHhcccccCCCeEEEEecccCCcCCchhhcchHHHHH
Q 046721 197 KHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 197 k~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~ 234 (1068)
++. .+..+++.+||+++ .++..++..+.
T Consensus 176 ~~~-----~~~~~i~~~Sa~~g-----~gv~~l~~~i~ 203 (207)
T TIGR00073 176 KKI-----NPEAEIILMSLKTG-----EGLDEWLEFLE 203 (207)
T ss_pred HHh-----CCCCCEEEEECCCC-----CCHHHHHHHHH
Confidence 332 35688999999865 56666666654
No 284
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=2.5e-06 Score=89.14 Aligned_cols=132 Identities=16% Similarity=0.248 Sum_probs=85.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhc-cccCCCCceeccEEE----EeCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPVTV----VSGKKRRLQFVECPND--ING-MIDCAKFADLALLLI 148 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~Iti----~~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVI 148 (1068)
+.|.|||-+|||||.|+.++... ++.....|..-.+++ ..++.-+++++||.|. |.+ +.+..+.|+.||||.
T Consensus 10 FKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vy 89 (205)
T KOG0084|consen 10 FKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVY 89 (205)
T ss_pred EEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEE
Confidence 67999999999999999888875 443344432211222 2356779999999994 666 677889999999999
Q ss_pred eCCCCCchhHHH-HHHHHH---h---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCe-EEEEecccC
Q 046721 149 DASHGFEMETFE-FLNLMQ---N---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAK-LFKLSGLIQ 218 (1068)
Q Consensus 149 Das~g~e~~t~e-iL~~L~---~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~k-Vf~ISAl~g 218 (1068)
|.+. .+++. +-.++. . .++| .++|-||+|+.....-..+..+.+.... +.+ ++.+||+.+
T Consensus 90 DiT~---~~SF~~v~~Wi~Ei~~~~~~~v~-~lLVGNK~Dl~~~~~v~~~~a~~fa~~~------~~~~f~ETSAK~~ 157 (205)
T KOG0084|consen 90 DITK---QESFNNVKRWIQEIDRYASENVP-KLLVGNKCDLTEKRVVSTEEAQEFADEL------GIPIFLETSAKDS 157 (205)
T ss_pred Eccc---HHHhhhHHHHHHHhhhhccCCCC-eEEEeeccccHhheecCHHHHHHHHHhc------CCcceeecccCCc
Confidence 9984 23332 222222 2 3556 6889999999752211122222322222 444 899999865
No 285
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.42 E-value=1.9e-06 Score=104.21 Aligned_cols=109 Identities=16% Similarity=0.204 Sum_probs=70.3
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccc---cC-CCCceeccEEEE-eCCCeeEEEEeCCCChh---------HHHHHH--
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYT---KL-KVPEVRGPVTVV-SGKKRRLQFVECPNDIN---------GMIDCA-- 138 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~---~~-~~~tt~~~Iti~-~~~k~rl~fIDtPGdl~---------smld~a-- 138 (1068)
.+..|+|||.+|+|||||+|+|++... .. ...|++ ...+. ......+.||||||-+. .++..+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 346899999999999999999999732 11 233333 22221 22467899999999221 133222
Q ss_pred --H--hcCEEEEEEeCC-CCCchhHHHHHHHHHh-CC---CCcEEEEEeCCCcCC
Q 046721 139 --K--FADLALLLIDAS-HGFEMETFEFLNLMQN-HG---LPNVMGVLTHLDKFT 184 (1068)
Q Consensus 139 --k--vADlVLlVIDas-~g~e~~t~eiL~~L~~-~G---lP~vIvVLNKiDlvk 184 (1068)
+ .+|+||||+..+ ...+.+...+++.++. .| ..++|+|+|+.|.+.
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 2 379999998764 2233344455555543 23 357999999999985
No 286
>PLN00023 GTP-binding protein; Provisional
Probab=98.40 E-value=2.1e-06 Score=97.32 Aligned_cols=107 Identities=13% Similarity=0.118 Sum_probs=68.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccE--E-EEe--------------CCCeeEEEEeCCCC--hhHHHH
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPV--T-VVS--------------GKKRRLQFVECPND--INGMID 136 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~I--t-i~~--------------~~k~rl~fIDtPGd--l~smld 136 (1068)
..|+|||..+||||||+++|++.. ......|....+ . +.. .....+.|+||+|. +.++..
T Consensus 22 iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~ 101 (334)
T PLN00023 22 VRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRS 101 (334)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhH
Confidence 679999999999999999999763 222222221111 1 111 12356899999993 555544
Q ss_pred -HHHhcCEEEEEEeCCCCCchhH-HHHHHHHHhC---------------CCCcEEEEEeCCCcCC
Q 046721 137 -CAKFADLALLLIDASHGFEMET-FEFLNLMQNH---------------GLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 137 -~akvADlVLlVIDas~g~e~~t-~eiL~~L~~~---------------GlP~vIvVLNKiDlvk 184 (1068)
.++.||++|+|+|.+..-.-.. ...+..+... .+| +|+|.||+|+..
T Consensus 102 ~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ip-IILVGNK~DL~~ 165 (334)
T PLN00023 102 LFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVP-YIVIGNKADIAP 165 (334)
T ss_pred HhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCc-EEEEEECccccc
Confidence 4689999999999986322111 1334444432 255 899999999964
No 287
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.36 E-value=1.5e-06 Score=95.03 Aligned_cols=148 Identities=22% Similarity=0.253 Sum_probs=87.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcccc-----------C-CCCc---------------eeccEEEEeC---------
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTK-----------L-KVPE---------------VRGPVTVVSG--------- 117 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~-----------~-~~~t---------------t~~~Iti~~~--------- 117 (1068)
+..++|+|-|+||+|||||+++|...+.. + .+.+ ....+.|.+.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 45689999999999999999999874310 0 0000 0112222210
Q ss_pred -------------CCeeEEEEeCCCChhHHHHHHHhcCEEEEEEeCCCCCchhHH--HHHHHHHhCCCCcEEEEEeCCCc
Q 046721 118 -------------KKRRLQFVECPNDINGMIDCAKFADLALLLIDASHGFEMETF--EFLNLMQNHGLPNVMGVLTHLDK 182 (1068)
Q Consensus 118 -------------~k~rl~fIDtPGdl~smld~akvADlVLlVIDas~g~e~~t~--eiL~~L~~~GlP~vIvVLNKiDl 182 (1068)
-...++||+|.|-=++=++.+..||++++|+-+..|-+.|.. .+|.+.. |+|+||.|.
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD-------i~vVNKaD~ 179 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD-------IFVVNKADR 179 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S-------EEEEE--SH
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc-------EEEEeCCCh
Confidence 134789999988666777888999999999998877766654 4666642 779999995
Q ss_pred CCcHHHHHHHHHHHHHHhccc-ccCCCeEEEEecccCCcCCchhhcchHHHHH
Q 046721 183 FTDKKKLRKTKQHLKHRFGTE-LYHGAKLFKLSGLIQGKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 183 vk~~k~l~~vkk~Lk~~~~~e-~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~ 234 (1068)
..-.....++...| ++.... -....+|+.+||..+ .++..|...|.
T Consensus 180 ~gA~~~~~~l~~~l-~l~~~~~~~W~ppV~~tsA~~~-----~Gi~eL~~~i~ 226 (266)
T PF03308_consen 180 PGADRTVRDLRSML-HLLREREDGWRPPVLKTSALEG-----EGIDELWEAID 226 (266)
T ss_dssp HHHHHHHHHHHHHH-HHCSTSCTSB--EEEEEBTTTT-----BSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hhccccccCCCCCEEEEEeCCC-----CCHHHHHHHHH
Confidence 43212222222222 121111 112468999999854 56666665553
No 288
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.36 E-value=6.1e-06 Score=93.39 Aligned_cols=152 Identities=15% Similarity=0.094 Sum_probs=87.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhcccc------------CCCC-------c--------eeccEEEEe---------
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYTK------------LKVP-------E--------VRGPVTVVS--------- 116 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~------------~~~~-------t--------t~~~Iti~~--------- 116 (1068)
.+.+.+|+|+|++|+|||||++.|...... .... . ....+.+..
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGG 110 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccc
Confidence 356789999999999999999998763100 0000 0 000111100
Q ss_pred -------------CCCeeEEEEeCCCChhHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcC
Q 046721 117 -------------GKKRRLQFVECPNDINGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKF 183 (1068)
Q Consensus 117 -------------~~k~rl~fIDtPGdl~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlv 183 (1068)
..+..++||||||.-.+..+.+..+|.++++.+...+-+ ...+...+ .++| .++|+||+|+.
T Consensus 111 ~~~~~~~~~~~l~~~g~D~viidT~G~~~~e~~i~~~aD~i~vv~~~~~~~e--l~~~~~~l--~~~~-~ivv~NK~Dl~ 185 (300)
T TIGR00750 111 LSQATRELILLLDAAGYDVIIVETVGVGQSEVDIANMADTFVVVTIPGTGDD--LQGIKAGL--MEIA-DIYVVNKADGE 185 (300)
T ss_pred hhHHHHHHHHHHHhCCCCEEEEeCCCCchhhhHHHHhhceEEEEecCCccHH--HHHHHHHH--hhhc-cEEEEEccccc
Confidence 125679999999966667778899999999976543322 12222222 3566 58899999998
Q ss_pred CcHHHHHHHHHHHH---HHhcccc-cCCCeEEEEecccCCcCCchhhcchHHHHHH
Q 046721 184 TDKKKLRKTKQHLK---HRFGTEL-YHGAKLFKLSGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 184 k~~k~l~~vkk~Lk---~~~~~e~-~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
... ........+. ..+.... ....+++++||+++ .++..|...|..
T Consensus 186 ~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g-----~Gi~~L~~~i~~ 235 (300)
T TIGR00750 186 GAT-NVTIARLMLALALEEIRRREDGWRPPVLTTSAVEG-----RGIDELWDAIEE 235 (300)
T ss_pred chh-HHHHHHHHHHHHHhhccccccCCCCCEEEEEccCC-----CCHHHHHHHHHH
Confidence 532 1211111111 1111111 11246999999865 555666555543
No 289
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.31 E-value=2e-06 Score=85.72 Aligned_cols=107 Identities=16% Similarity=0.249 Sum_probs=74.8
Q ss_pred eEEEEECCCCCChhHHHHHHHh-ccccCCCCceeccEEEEeCCCeeEEEEeCCC--ChhHHHH-HHHhcCEEEEEEeCCC
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIK-HYTKLKVPEVRGPVTVVSGKKRRLQFVECPN--DINGMID-CAKFADLALLLIDASH 152 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~-~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPG--dl~smld-~akvADlVLlVIDas~ 152 (1068)
.-+++||+-++|||||+|.+.. .+...-..+..-.+.-++...-.+.++|.|| .+.+|.+ .++.++++++||||++
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad 100 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAAD 100 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCC
Confidence 3578999999999999998876 4443333332222223444567788899999 5778887 4799999999999986
Q ss_pred CC--chhHHHHHHHH---HhCCCCcEEEEEeCCCcCC
Q 046721 153 GF--EMETFEFLNLM---QNHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 153 g~--e~~t~eiL~~L---~~~GlP~vIvVLNKiDlvk 184 (1068)
+- +..-.++-++| .-.|+| +++.-||.|+..
T Consensus 101 ~~k~~~sr~EL~~LL~k~~l~gip-~LVLGnK~d~~~ 136 (186)
T KOG0075|consen 101 PDKLEASRSELHDLLDKPSLTGIP-LLVLGNKIDLPG 136 (186)
T ss_pred cccchhhHHHHHHHhcchhhcCCc-EEEecccccCcc
Confidence 32 22222444444 346899 888999999864
No 290
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.6e-06 Score=100.04 Aligned_cols=107 Identities=20% Similarity=0.262 Sum_probs=81.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc-------------ccCCCCceeccEEEEeC----------------------CCe
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY-------------TKLKVPEVRGPVTVVSG----------------------KKR 120 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~-------------~~~~~~tt~~~Iti~~~----------------------~k~ 120 (1068)
-+++.||.|.++|||||..+|+... +...-.+....|||-+. ...
T Consensus 19 iRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~F 98 (842)
T KOG0469|consen 19 IRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGF 98 (842)
T ss_pred cccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcce
Confidence 4678999999999999999998631 11111222345665221 134
Q ss_pred eEEEEeCCC--ChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcC
Q 046721 121 RLQFVECPN--DING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKF 183 (1068)
Q Consensus 121 rl~fIDtPG--dl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlv 183 (1068)
-|.+||.|| ||.+ +..++++.|.+|+|+|+-.|+-.+++.+|+...+..+.+ ++|+||+|..
T Consensus 99 LiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkP-vlv~NK~DRA 163 (842)
T KOG0469|consen 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKP-VLVMNKMDRA 163 (842)
T ss_pred eEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccc-eEEeehhhHH
Confidence 588999999 7777 666779999999999999999999999999887777763 6799999964
No 291
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=1e-05 Score=92.34 Aligned_cols=75 Identities=21% Similarity=0.239 Sum_probs=54.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc--cCCCCceeccEE-EEe---------------CC---CeeEEEEeCCC------
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT--KLKVPEVRGPVT-VVS---------------GK---KRRLQFVECPN------ 129 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~--~~~~~tt~~~It-i~~---------------~~---k~rl~fIDtPG------ 129 (1068)
..++|||.||||||||+|+|+.... ...+.+|-.|-. ++. .+ ...+.|+|.+|
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 4689999999999999999999743 234444432222 111 11 23688999876
Q ss_pred ---Chh-HHHHHHHhcCEEEEEEeCC
Q 046721 130 ---DIN-GMIDCAKFADLALLLIDAS 151 (1068)
Q Consensus 130 ---dl~-smld~akvADlVLlVIDas 151 (1068)
-|. ..|+.++.+|+|++|||++
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEec
Confidence 133 5999999999999999998
No 292
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.28 E-value=8.6e-06 Score=91.40 Aligned_cols=123 Identities=23% Similarity=0.418 Sum_probs=76.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCCC---C----ceeccEEE-------Ee-CCCeeEEEEeCCC--C-h------
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLKV---P----EVRGPVTV-------VS-GKKRRLQFVECPN--D-I------ 131 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~~---~----tt~~~Iti-------~~-~~k~rl~fIDtPG--d-l------ 131 (1068)
...|.|||.+|+|||||||+|++......- . .....+.+ .. +...+++|||||| + +
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 468999999999999999999997321110 0 00011111 11 2366899999998 1 1
Q ss_pred hHHHHHH---------------------HhcCEEEEEEeCC-CCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHH
Q 046721 132 NGMIDCA---------------------KFADLALLLIDAS-HGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKL 189 (1068)
Q Consensus 132 ~smld~a---------------------kvADlVLlVIDas-~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l 189 (1068)
..+++.+ ...|++|++|+++ .++.+.+.+++..|. ..-++|.|+.|.|.+. ..++
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls--~~vNvIPvIaKaD~lt-~~el 160 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS--KRVNVIPVIAKADTLT-PEEL 160 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT--TTSEEEEEESTGGGS--HHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc--ccccEEeEEecccccC-HHHH
Confidence 1111111 3569999999986 678877888888774 3345999999999998 4567
Q ss_pred HHHHHHHHHHhc
Q 046721 190 RKTKQHLKHRFG 201 (1068)
Q Consensus 190 ~~vkk~Lk~~~~ 201 (1068)
...++.+...+.
T Consensus 161 ~~~k~~i~~~l~ 172 (281)
T PF00735_consen 161 QAFKQRIREDLE 172 (281)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666553
No 293
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=3.5e-06 Score=87.39 Aligned_cols=107 Identities=14% Similarity=0.144 Sum_probs=76.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEEeCCCC
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--INGM-IDCAKFADLALLLIDASHG 153 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVIDas~g 153 (1068)
..|.++|+.++||||++..|-..-.-.+++|..-.+.-+..++.+++++|+-|. +..+ .......+.+|||||++..
T Consensus 18 ~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr 97 (181)
T KOG0070|consen 18 MRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDR 97 (181)
T ss_pred EEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcH
Confidence 578999999999999998887654334455544445555567899999999984 4444 4457899999999999853
Q ss_pred --CchhHHHHHHHHHhC---CCCcEEEEEeCCCcCC
Q 046721 154 --FEMETFEFLNLMQNH---GLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 154 --~e~~t~eiL~~L~~~---GlP~vIvVLNKiDlvk 184 (1068)
+.+.-.++..++... +.| +++..||.|+..
T Consensus 98 ~Ri~eak~eL~~~l~~~~l~~~~-llv~aNKqD~~~ 132 (181)
T KOG0070|consen 98 ERIEEAKEELHRMLAEPELRNAP-LLVFANKQDLPG 132 (181)
T ss_pred HHHHHHHHHHHHHHcCcccCCce-EEEEechhhccc
Confidence 333333555555443 555 888999999864
No 294
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=9.7e-06 Score=84.54 Aligned_cols=151 Identities=17% Similarity=0.247 Sum_probs=91.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccC-CCCceecc-EE--EEe-CCCeeEEEEeCCC--ChhHHH-HHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVRGP-VT--VVS-GKKRRLQFVECPN--DINGMI-DCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~~~-It--i~~-~~k~rl~fIDtPG--dl~sml-d~akvADlVLlV 147 (1068)
-..|+++|-.+||||||+-+++...-.. ...|+... +| +.. .....+.++||.| .++++. -..+.|+++|+|
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivv 84 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVV 84 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEE
Confidence 4679999999999999998887753222 23333221 12 222 2356788999999 455533 256999999999
Q ss_pred EeCCCCCchhH-HHHHHHHHhCCCCcEEE--EEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 148 IDASHGFEMET-FEFLNLMQNHGLPNVMG--VLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 148 IDas~g~e~~t-~eiL~~L~~~GlP~vIv--VLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
.|.+..-.-+. ..-+.-|+.+.-|.+++ |-||+|+....+ ...+......+ .+..+|..||+++
T Consensus 85 YDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~-------~gll~~ETSAKTg----- 152 (200)
T KOG0092|consen 85 YDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAES-------QGLLFFETSAKTG----- 152 (200)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHh-------cCCEEEEEecccc-----
Confidence 99975221111 13445566666575555 779999986221 22333222111 4778899999976
Q ss_pred hhhcchHHHHHHhhc
Q 046721 224 KDIGNLAEFISVMKF 238 (1068)
Q Consensus 224 ~ei~nLlR~I~~~k~ 238 (1068)
..+..+...|....+
T Consensus 153 ~Nv~~if~~Ia~~lp 167 (200)
T KOG0092|consen 153 ENVNEIFQAIAEKLP 167 (200)
T ss_pred cCHHHHHHHHHHhcc
Confidence 334444444544444
No 295
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.20 E-value=6e-06 Score=91.53 Aligned_cols=151 Identities=21% Similarity=0.194 Sum_probs=96.5
Q ss_pred CCCCCCeEEEEECCCCCChhHHHHHHHhccc-----------cCCCCcee----------------ccEEEEeC------
Q 046721 71 YGEPPPYVVVVQGPPQVGKSLLIKCLIKHYT-----------KLKVPEVR----------------GPVTVVSG------ 117 (1068)
Q Consensus 71 ~~~~pP~~VaVVG~pnvGKSTLIn~L~~~~~-----------~~~~~tt~----------------~~Iti~~~------ 117 (1068)
+..+.+++|+|-|.||+|||||+..|...+. .+..+-+. ..+.+.+.
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~l 125 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTL 125 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccc
Confidence 3457789999999999999999999986421 00000010 11111110
Q ss_pred ----------------CCeeEEEEeCCCChhHHHHHHHhcCEEEEEEeCCCCCchhHH--HHHHHHHhCCCCcEEEEEeC
Q 046721 118 ----------------KKRRLQFVECPNDINGMIDCAKFADLALLLIDASHGFEMETF--EFLNLMQNHGLPNVMGVLTH 179 (1068)
Q Consensus 118 ----------------~k~rl~fIDtPGdl~smld~akvADlVLlVIDas~g~e~~t~--eiL~~L~~~GlP~vIvVLNK 179 (1068)
-..-++||+|.|-=++=.+.+..||.+|+|+=+..|-+.|.. -+|.+.- |+|+||
T Consensus 126 GGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD-------i~vINK 198 (323)
T COG1703 126 GGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD-------IIVINK 198 (323)
T ss_pred hhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh-------eeeEec
Confidence 134688888887666666778999999999977777666655 3555542 679999
Q ss_pred CCcCCcHHHHHHHHHHHHHH--hcccccCCCeEEEEecccCCcCCchhhcchHHHH
Q 046721 180 LDKFTDKKKLRKTKQHLKHR--FGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFI 233 (1068)
Q Consensus 180 iDlvk~~k~l~~vkk~Lk~~--~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I 233 (1068)
.|.-.-....+.+...|.-. .|.+-....+|+-+||..| +++..|...|
T Consensus 199 aD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g-----~Gi~~L~~ai 249 (323)
T COG1703 199 ADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEG-----EGIDELWDAI 249 (323)
T ss_pred cChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccC-----CCHHHHHHHH
Confidence 99543222333444433322 2555567889999999976 4666666555
No 296
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.19 E-value=1.2e-05 Score=88.27 Aligned_cols=107 Identities=18% Similarity=0.240 Sum_probs=51.6
Q ss_pred eEEEEeCCCChh--H-------HHHHHH--hcCEEEEEEeCCCCCchhHH-----HHHHHHHhCCCCcEEEEEeCCCcCC
Q 046721 121 RLQFVECPNDIN--G-------MIDCAK--FADLALLLIDASHGFEMETF-----EFLNLMQNHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 121 rl~fIDtPGdl~--s-------mld~ak--vADlVLlVIDas~g~e~~t~-----eiL~~L~~~GlP~vIvVLNKiDlvk 184 (1068)
.+.++||||.+. . +++.+. ..=++|+++|+..--+...+ ..+.+...+++| +|.|+||+|+++
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP-~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELP-HVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSE-EEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCC-EEEeeeccCccc
Confidence 689999999533 1 222222 34579999999865444333 122333447999 788999999987
Q ss_pred cH--HH---------H--------HHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchHHHHH
Q 046721 185 DK--KK---------L--------RKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 185 ~~--k~---------l--------~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~ 234 (1068)
+. .. + ......+... ...+....+++++|+.+ ...+.+|...|.
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~-l~~~~~~~~f~pls~~~-----~~~~~~L~~~id 233 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAEL-LDDFGLVIRFIPLSSKD-----GEGMEELLAAID 233 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHH-CCCCSSS---EE-BTTT-----TTTHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH-HhhcCCCceEEEEECCC-----hHHHHHHHHHHH
Confidence 22 00 0 1111122222 22333333899999874 466666766654
No 297
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.17 E-value=2.1e-05 Score=85.90 Aligned_cols=137 Identities=13% Similarity=0.264 Sum_probs=76.7
Q ss_pred EEEEECCCCCChhHHHHHHHhcccc-C--CC-CceeccEE-EEeCCCeeEEEEeCCCChh-------H-HHHHHHhcCEE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTK-L--KV-PEVRGPVT-VVSGKKRRLQFVECPNDIN-------G-MIDCAKFADLA 144 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~-~--~~-~tt~~~It-i~~~~k~rl~fIDtPGdl~-------s-mld~akvADlV 144 (1068)
.|.++|+.++||||+.+.+...+.. . .+ .|.+-... +.....-.+.++||||... . .-...+.++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 3789999999999999999887521 1 11 22111111 2223466899999999421 1 33456899999
Q ss_pred EEEEeCC-CCCchhHHH---HHHHHHhC--CCCcEEEEEeCCCcCCcHH---HHHHHHHHHHHHhcccccCCCeEEEEec
Q 046721 145 LLLIDAS-HGFEMETFE---FLNLMQNH--GLPNVMGVLTHLDKFTDKK---KLRKTKQHLKHRFGTELYHGAKLFKLSG 215 (1068)
Q Consensus 145 LlVIDas-~g~e~~t~e---iL~~L~~~--GlP~vIvVLNKiDlvk~~k---~l~~vkk~Lk~~~~~e~~~~~kVf~ISA 215 (1068)
|+|+|+. ..+...-.. ++..+... ++ ++.+.+.|+|++.+.. ..+...+.+.+.+....+....+|.+|-
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~-~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQYSPNI-KVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHHSTT--EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHhCCCC-eEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 9999997 444443333 34433332 33 4889999999986322 2333444454444332223466677763
No 298
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=2e-06 Score=97.16 Aligned_cols=121 Identities=17% Similarity=0.293 Sum_probs=91.4
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc----------ccCCCCc-----eeccEEEEe------CCCeeEEEEeCCCC--hh-
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY----------TKLKVPE-----VRGPVTVVS------GKKRRLQFVECPND--IN- 132 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~----------~~~~~~t-----t~~~Iti~~------~~k~rl~fIDtPGd--l~- 132 (1068)
++|+|+.+.++||||...+|+.-. .+.++.. ...+||+.+ +++.|+.+|||||. |.
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 679999999999999888887521 1111111 224577533 57899999999994 44
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHh
Q 046721 133 GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRF 200 (1068)
Q Consensus 133 smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~ 200 (1068)
.+-+++++.|.++.|+|+|.|++.++..+++....+.+|. ++.+||+|... ..++-....+.+.+
T Consensus 118 everclrvldgavav~dasagve~qtltvwrqadk~~ip~-~~finkmdk~~--anfe~avdsi~ekl 182 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPA-HCFINKMDKLA--ANFENAVDSIEEKL 182 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCch-hhhhhhhhhhh--hhhhhHHHHHHHHh
Confidence 3778889999999999999999999999999988899995 77999999874 34444455554443
No 299
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.14 E-value=5.7e-06 Score=90.53 Aligned_cols=106 Identities=21% Similarity=0.226 Sum_probs=76.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc-----cCCCCceeccEEEEeCCCeeEEEEeCCC------------ChhHH-HHH
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT-----KLKVPEVRGPVTVVSGKKRRLQFVECPN------------DINGM-IDC 137 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~-----~~~~~tt~~~Iti~~~~k~rl~fIDtPG------------dl~sm-ld~ 137 (1068)
++.++++|.+|+|||+|||.|+.... +.+...|+. |.... -..++.++|.|| ++..+ ...
T Consensus 136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~-in~f~-v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 136 RPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQA-INHFH-VGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCcccee-eeeee-ccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence 36789999999999999999998632 112222221 22111 245899999999 23332 222
Q ss_pred H---HhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC
Q 046721 138 A---KFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 138 a---kvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk 184 (1068)
+ +.-=-+++++|++-++...+..++++|..+++| ..+|+||||..+
T Consensus 214 ~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP-~t~vfTK~DK~k 262 (320)
T KOG2486|consen 214 LLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVP-MTSVFTKCDKQK 262 (320)
T ss_pred HHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCC-eEEeeehhhhhh
Confidence 2 233347889999999999999999999999999 677999999875
No 300
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=4.9e-06 Score=87.98 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=66.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCCh--h-HHHHHHH---hcCEEEEEEe
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPNDI--N-GMIDCAK---FADLALLLID 149 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGdl--~-smld~ak---vADlVLlVID 149 (1068)
+..|.++|+.++|||+|+-.|+......++.......-........+++||.||.. . .+++..+ .|-.||||||
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVD 117 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVD 117 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEe
Confidence 45789999999999998877776522222211111111111233458999999953 3 3777776 7899999999
Q ss_pred CCCCCch---hHH---HHHHHHH-hCCCCcEEEEEeCCCcCC
Q 046721 150 ASHGFEM---ETF---EFLNLMQ-NHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 150 as~g~e~---~t~---eiL~~L~-~~GlP~vIvVLNKiDlvk 184 (1068)
+..-... -.+ .+|.... ....|+++++.||-|++.
T Consensus 118 Sa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 118 SATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred ccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence 8632211 111 2333222 133445999999999984
No 301
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.10 E-value=6.7e-05 Score=85.40 Aligned_cols=133 Identities=18% Similarity=0.325 Sum_probs=86.2
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccccC-------CCCceeccEEEE------e--CCCeeEEEEeCCC--C-----
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYTKL-------KVPEVRGPVTVV------S--GKKRRLQFVECPN--D----- 130 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~-------~~~tt~~~Iti~------~--~~k~rl~fIDtPG--d----- 130 (1068)
.|-+++|.+||.+|.||||++|.|++..... ....++..+.+. . +-..++++||||| +
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs 99 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS 99 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence 4778999999999999999999999972111 111011112221 1 2367899999998 1
Q ss_pred --hhHHHHHH----------------------HhcCEEEEEEeCC-CCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCc
Q 046721 131 --INGMIDCA----------------------KFADLALLLIDAS-HGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTD 185 (1068)
Q Consensus 131 --l~smld~a----------------------kvADlVLlVIDas-~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~ 185 (1068)
+..+++.+ ...+++|+.|-++ +++.+.+.+++..|. ..-++|.|+-|.|.+..
T Consensus 100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls--~~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLS--KRVNLIPVIAKADTLTD 177 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHh--cccCeeeeeeccccCCH
Confidence 11122211 2458999999874 778777777777653 33458999999999974
Q ss_pred HHHHHHHHHHHHHHhcccccCCCeEE
Q 046721 186 KKKLRKTKQHLKHRFGTELYHGAKLF 211 (1068)
Q Consensus 186 ~k~l~~vkk~Lk~~~~~e~~~~~kVf 211 (1068)
..+...++.+.+-+.. ...+||
T Consensus 178 -~El~~~K~~I~~~i~~---~nI~vf 199 (373)
T COG5019 178 -DELAEFKERIREDLEQ---YNIPVF 199 (373)
T ss_pred -HHHHHHHHHHHHHHHH---hCCcee
Confidence 4566666666554422 245555
No 302
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.10 E-value=3.4e-05 Score=82.25 Aligned_cols=125 Identities=21% Similarity=0.251 Sum_probs=73.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccC--C-----CCce-------------eccEEEEe-------------------
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKL--K-----VPEV-------------RGPVTVVS------------------- 116 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~--~-----~~tt-------------~~~Iti~~------------------- 116 (1068)
|.+|++||++||||||.+-.|...+... . ..+. .-.+.+..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 7899999999999999888887643110 0 0000 00111110
Q ss_pred CCCeeEEEEeCCCC-------hh---HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcH
Q 046721 117 GKKRRLQFVECPND-------IN---GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDK 186 (1068)
Q Consensus 117 ~~k~rl~fIDtPGd-------l~---smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~ 186 (1068)
.++..++||||||. +. .+++.+ ..+-++||+|++.+.+... .+.......++.. +++||+|.....
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~~~~~~-~~~~~~~~~~~~~--lIlTKlDet~~~ 156 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEAL-NPDEVHLVLSATMGQEDLE-QALAFYEAFGIDG--LILTKLDETARL 156 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH-SSSEEEEEEEGGGGGHHHH-HHHHHHHHSSTCE--EEEESTTSSSTT
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhc-CCccceEEEecccChHHHH-HHHHHhhcccCce--EEEEeecCCCCc
Confidence 02346999999992 11 233333 5788999999987654322 4555555567764 469999998643
Q ss_pred HHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 187 KKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 187 k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
-.+-.+.. . .+.+|-+++
T Consensus 157 G~~l~~~~---~-------~~~Pi~~it 174 (196)
T PF00448_consen 157 GALLSLAY---E-------SGLPISYIT 174 (196)
T ss_dssp HHHHHHHH---H-------HTSEEEEEE
T ss_pred ccceeHHH---H-------hCCCeEEEE
Confidence 33222221 1 267888887
No 303
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=6.1e-05 Score=84.95 Aligned_cols=134 Identities=19% Similarity=0.299 Sum_probs=86.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhc-cccC----CCCceeccEEEEeCC---------------------------------
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH-YTKL----KVPEVRGPVTVVSGK--------------------------------- 118 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~-~~~~----~~~tt~~~Iti~~~~--------------------------------- 118 (1068)
+.|.++|+...||||+|+-|+.+ +++. .+.| ..-|.+..+.
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTt-d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT-DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCc-ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 47899999999999999999987 3221 1111 1111111110
Q ss_pred --------CeeEEEEeCCC-------------ChhHHHH-HHHhcCEEEEEEeCCC-CCchhHHHHHHHHHhCCCCcEEE
Q 046721 119 --------KRRLQFVECPN-------------DINGMID-CAKFADLALLLIDASH-GFEMETFEFLNLMQNHGLPNVMG 175 (1068)
Q Consensus 119 --------k~rl~fIDtPG-------------dl~smld-~akvADlVLlVIDas~-g~e~~t~eiL~~L~~~GlP~vIv 175 (1068)
-.++++||||| +|..++. -+..||.||||.|+.. .+..+..+++..|+.+--. +=+
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edk-iRV 216 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDK-IRV 216 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcce-eEE
Confidence 12699999999 3444444 3688999999999963 4556677899999877655 667
Q ss_pred EEeCCCcCCcHHHHHHHHHHHHHHhccccc----CCCeEEEEecc
Q 046721 176 VLTHLDKFTDKKKLRKTKQHLKHRFGTELY----HGAKLFKLSGL 216 (1068)
Q Consensus 176 VLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~----~~~kVf~ISAl 216 (1068)
||||.|.++. +++-++.-. .+|+-.. +....+|+-+.
T Consensus 217 VLNKADqVdt-qqLmRVyGA---LmWslgkv~nTpev~rvYigSf 257 (532)
T KOG1954|consen 217 VLNKADQVDT-QQLMRVYGA---LMWSLGKVMNTPEVSRVYIGSF 257 (532)
T ss_pred EeccccccCH-HHHHHHHHH---HHHhhhhhcCCCcceeEEeecc
Confidence 9999999984 444444333 3454221 34445566554
No 304
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.08 E-value=1.4e-05 Score=82.81 Aligned_cols=138 Identities=18% Similarity=0.189 Sum_probs=85.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc-ccCCCCceec-cEE--E-EeCCCeeEEEEeCCC--ChhHHH-HHHHhcCEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRG-PVT--V-VSGKKRRLQFVECPN--DINGMI-DCAKFADLAL 145 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~-~It--i-~~~~k~rl~fIDtPG--dl~sml-d~akvADlVL 145 (1068)
..+..|.|+|-+|||||+|+|.++... ....-.|+.. -+| + +...-..++++||.| .|.++- .-.+.||.++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 346889999999999999999999863 2121111110 111 1 223455788999999 355432 2348899999
Q ss_pred EEEeCCCC-----CchhHHHHHHHHHhC---CCCcEEEEEeCCCcCCcH-HH--HHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 146 LLIDASHG-----FEMETFEFLNLMQNH---GLPNVMGVLTHLDKFTDK-KK--LRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 146 lVIDas~g-----~e~~t~eiL~~L~~~---GlP~vIvVLNKiDlvk~~-k~--l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
+|.|.... ++.+-.+||.....+ .+| .|++-||+|+-... .. ..+..... .--...+.|.+|
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FP-FVilGNKiD~~~~~~r~VS~~~Aq~WC------~s~gnipyfEtS 159 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFP-FVILGNKIDVDGGKSRQVSEKKAQTWC------KSKGNIPYFETS 159 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCccc-EEEEcccccCCCCccceeeHHHHHHHH------HhcCCceeEEec
Confidence 99998632 333444677765433 467 78899999985421 11 11222222 222578999999
Q ss_pred cccC
Q 046721 215 GLIQ 218 (1068)
Q Consensus 215 Al~g 218 (1068)
|+.+
T Consensus 160 AK~~ 163 (210)
T KOG0394|consen 160 AKEA 163 (210)
T ss_pred cccc
Confidence 9744
No 305
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=4.8e-06 Score=98.62 Aligned_cols=108 Identities=17% Similarity=0.276 Sum_probs=85.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc--------ccCC-------CCceeccEEE------EeCCCeeEEEEeCCCChh--
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY--------TKLK-------VPEVRGPVTV------VSGKKRRLQFVECPNDIN-- 132 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~--------~~~~-------~~tt~~~Iti------~~~~k~rl~fIDtPGdl~-- 132 (1068)
-++|+|+.|-++|||||...++... +... ..+...+||+ +.+.++++.+|||||.+.
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 4789999999999999999887632 0000 0011234554 335689999999999544
Q ss_pred -HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC
Q 046721 133 -GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 133 -smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk 184 (1068)
.+.+++++.|.+|+|+|+..|++.++..+.+.+...|+|+ |..+||+|...
T Consensus 119 ~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~-i~FiNKmDRmG 170 (721)
T KOG0465|consen 119 FEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPR-ICFINKMDRMG 170 (721)
T ss_pred EEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCe-EEEEehhhhcC
Confidence 3788999999999999999999999999999999999995 77999999985
No 306
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.05 E-value=5.5e-06 Score=89.06 Aligned_cols=92 Identities=25% Similarity=0.325 Sum_probs=64.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc--cCCCCceeccEE-EEeCCCeeEEEEeCCCChh----------HHHHHHHhcCE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT--KLKVPEVRGPVT-VVSGKKRRLQFVECPNDIN----------GMIDCAKFADL 143 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~--~~~~~tt~~~It-i~~~~k~rl~fIDtPGdl~----------smld~akvADl 143 (1068)
..||+||.|.+|||||+..|++... .....||-..|. +....+..|+++|.||-+. .++..|+-||+
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDl 142 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADL 142 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecccE
Confidence 5799999999999999999988632 122233333333 4556788999999999332 36777899999
Q ss_pred EEEEEeCCCCCchhHHHHHH-HHHhCCC
Q 046721 144 ALLLIDASHGFEMETFEFLN-LMQNHGL 170 (1068)
Q Consensus 144 VLlVIDas~g~e~~t~eiL~-~L~~~Gl 170 (1068)
||+|+||+..- ...++|. .|.+.|+
T Consensus 143 ilMvLDatk~e--~qr~~le~ELe~vGi 168 (364)
T KOG1486|consen 143 ILMVLDATKSE--DQREILEKELEAVGI 168 (364)
T ss_pred EEEEecCCcch--hHHHHHHHHHHHhce
Confidence 99999997532 2333443 5666665
No 307
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.04 E-value=3.3e-06 Score=94.50 Aligned_cols=53 Identities=8% Similarity=0.119 Sum_probs=36.6
Q ss_pred EEEEEeCCCcCCc-HHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchHHHHHH
Q 046721 173 VMGVLTHLDKFTD-KKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 173 vIvVLNKiDlvk~-~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
-++||||+|++.. ..++......++.. .+.++||++||++| .++..++.+|..
T Consensus 233 DIVVLNKiDLl~~~~~dle~~~~~lr~l-----np~a~I~~vSA~tG-----eGld~L~~~L~~ 286 (290)
T PRK10463 233 SLMLLNKVDLLPYLNFDVEKCIACAREV-----NPEIEIILISATSG-----EGMDQWLNWLET 286 (290)
T ss_pred cEEEEEhHHcCcccHHHHHHHHHHHHhh-----CCCCcEEEEECCCC-----CCHHHHHHHHHH
Confidence 4789999999852 23455555555433 47899999999865 566667766643
No 308
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.03 E-value=8.4e-06 Score=83.12 Aligned_cols=53 Identities=25% Similarity=0.316 Sum_probs=38.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEEEEeCCCeeEEEEeCCC
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVTVVSGKKRRLQFVECPN 129 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~Iti~~~~k~rl~fIDtPG 129 (1068)
.+..|+++|.||+|||||+|+|++.. ++..+.+|+....+.. ...+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~--~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL--MKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc--CCCEEEEECcC
Confidence 35789999999999999999999863 3445555554322222 34689999998
No 309
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.02 E-value=3e-05 Score=82.67 Aligned_cols=136 Identities=19% Similarity=0.277 Sum_probs=82.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc-cccCCCCceeccEE---EEeCCCeeEEEEeCCC--ChhHHHHH-HHhcCEEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPVT---VVSGKKRRLQFVECPN--DINGMIDC-AKFADLALLLI 148 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~It---i~~~~k~rl~fIDtPG--dl~smld~-akvADlVLlVI 148 (1068)
...|+|+|.+|+|||+|+..++.. +......|....++ .+.+....+.|+||+| .+.+|.+. ...+|.-|+|.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVy 82 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVY 82 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEE
Confidence 468999999999999988777765 33322222222222 1224466788999999 56677776 58889999999
Q ss_pred eCCCCCchhHH-HHHHHH-H---hCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 149 DASHGFEMETF-EFLNLM-Q---NHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 149 Das~g~e~~t~-eiL~~L-~---~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
+.+....=+.. .++..+ + ...+| +|+|.||+|+.....--.+--+.|.. . -.++++-+||..+
T Consensus 83 sitd~~SF~~~~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~R~V~~eeg~~la~----~--~~~~f~E~Sak~~ 150 (196)
T KOG0395|consen 83 SITDRSSFEEAKQLREQILRVKGRDDVP-IILVGNKCDLERERQVSEEEGKALAR----S--WGCAFIETSAKLN 150 (196)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCcCCCC-EEEEEEcccchhccccCHHHHHHHHH----h--cCCcEEEeeccCC
Confidence 98753221111 222222 2 23467 89999999997521111111122211 1 2566899999854
No 310
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=5.7e-05 Score=78.46 Aligned_cols=156 Identities=16% Similarity=0.173 Sum_probs=92.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc-ccCCCCce--eccEEE--EeCCCeeEEEEeCCC--ChhHH-HHHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEV--RGPVTV--VSGKKRRLQFVECPN--DINGM-IDCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt--~~~Iti--~~~~k~rl~fIDtPG--dl~sm-ld~akvADlVLlV 147 (1068)
-+.+.++|-.+||||.|+.+.+... ......|. .-+.+. +..+.-+++++||.| .|.++ -...+.|-.+|||
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLV 85 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLV 85 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEE
Confidence 4678999999999999998888762 21111111 112221 234577899999999 57774 4567999999999
Q ss_pred EeCCC--CCchhHHHHHHHHHhCCCC--cEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 148 IDASH--GFEMETFEFLNLMQNHGLP--NVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 148 IDas~--g~e~~t~eiL~~L~~~GlP--~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
.|.+. .|...+..++. ++.++.+ .+|++-||+|+.... .+.++=-..|..+ .+-..+-+||+++
T Consensus 86 ydit~r~sF~hL~~wL~D-~rq~~~~NmvImLiGNKsDL~~rR----~Vs~EEGeaFA~e--hgLifmETSakt~----- 153 (216)
T KOG0098|consen 86 YDITRRESFNHLTSWLED-ARQHSNENMVIMLIGNKSDLEARR----EVSKEEGEAFARE--HGLIFMETSAKTA----- 153 (216)
T ss_pred EEccchhhHHHHHHHHHH-HHHhcCCCcEEEEEcchhhhhccc----cccHHHHHHHHHH--cCceeehhhhhhh-----
Confidence 99874 23322233333 3334433 367778999997532 2222211222222 2555667888854
Q ss_pred hhhcchHHHHHHhhcccccc
Q 046721 224 KDIGNLAEFISVMKFHSLSW 243 (1068)
Q Consensus 224 ~ei~nLlR~I~~~k~r~l~w 243 (1068)
..+.++..-++....+.+.|
T Consensus 154 ~~VEEaF~nta~~Iy~~~q~ 173 (216)
T KOG0098|consen 154 ENVEEAFINTAKEIYRKIQD 173 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 55555554454444444444
No 311
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.01 E-value=7.3e-05 Score=81.74 Aligned_cols=144 Identities=15% Similarity=0.305 Sum_probs=88.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccC--------------------CC---Cc-------------eeccEEE-E-
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKL--------------------KV---PE-------------VRGPVTV-V- 115 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~--------------------~~---~t-------------t~~~Iti-~- 115 (1068)
..|.+|.|||..|+||||++.+|....... ++ .+ ..|+|+. .
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 347889999999999999999998742000 00 00 1122221 0
Q ss_pred --e-------------CCCeeEEEEeCCCChh--------HH-HHHHH--hcCEEEEEEeCCCCCchhHH-----HHHHH
Q 046721 116 --S-------------GKKRRLQFVECPNDIN--------GM-IDCAK--FADLALLLIDASHGFEMETF-----EFLNL 164 (1068)
Q Consensus 116 --~-------------~~k~rl~fIDtPGdl~--------sm-ld~ak--vADlVLlVIDas~g~e~~t~-----eiL~~ 164 (1068)
. .....+++|||||.+. ++ .+.++ .--+|++|+|....-.+.++ ...++
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi 176 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI 176 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence 0 1234699999999432 23 33332 33578899998766555555 34456
Q ss_pred HHhCCCCcEEEEEeCCCcCCcHH------HHHHHHHHHH--------------HHhcccccCCCeEEEEecccC
Q 046721 165 MQNHGLPNVMGVLTHLDKFTDKK------KLRKTKQHLK--------------HRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 165 L~~~GlP~vIvVLNKiDlvk~~k------~l~~vkk~Lk--------------~~~~~e~~~~~kVf~ISAl~g 218 (1068)
|-...+| .|+|+||.|+.+..- ++......+. +....+||...+.+.+|+.+|
T Consensus 177 lyktklp-~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG 249 (366)
T KOG1532|consen 177 LYKTKLP-FIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG 249 (366)
T ss_pred HHhccCC-eEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC
Confidence 6667899 799999999986321 1111112222 122457788889999999876
No 312
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.97 E-value=1.2e-05 Score=83.91 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=40.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEEEEeCCCeeEEEEeCCC
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVTVVSGKKRRLQFVECPN 129 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~Iti~~~~k~rl~fIDtPG 129 (1068)
..+..|+|+|.||+|||||||+|++.. ++..+.+|+...++.. ..++.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~--~~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL--DKKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe--CCCEEEEECcC
Confidence 346789999999999999999999863 3445555655333333 34799999998
No 313
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=5.8e-05 Score=90.93 Aligned_cols=96 Identities=17% Similarity=0.281 Sum_probs=63.2
Q ss_pred eeEEEEeCCC-ChhH----HHH-HHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcH-HHHHHH
Q 046721 120 RRLQFVECPN-DING----MID-CAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDK-KKLRKT 192 (1068)
Q Consensus 120 ~rl~fIDtPG-dl~s----mld-~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~-k~l~~v 192 (1068)
..+.+||.|| ++.+ .+| .+..||++|||+.|-..++.....|+.... .+.|+++++.||+|...+. +-.+.+
T Consensus 206 nDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs-~~KpniFIlnnkwDasase~ec~e~V 284 (749)
T KOG0448|consen 206 NDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVS-EEKPNIFILNNKWDASASEPECKEDV 284 (749)
T ss_pred ccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhh-ccCCcEEEEechhhhhcccHHHHHHH
Confidence 3689999999 4443 333 468999999999997767665566776554 4589999999999998542 223344
Q ss_pred HHHHHHHh-cccccCCCeEEEEecc
Q 046721 193 KQHLKHRF-GTELYHGAKLFKLSGL 216 (1068)
Q Consensus 193 kk~Lk~~~-~~e~~~~~kVf~ISAl 216 (1068)
++.+...- .++.-....||++||.
T Consensus 285 ~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 285 LKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred HHHHHhcCcccHhhhcCeeEEEecc
Confidence 44432110 1111235678999964
No 314
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.96 E-value=8.3e-05 Score=80.83 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=53.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhcc-----ccCCCCceeccEEEEeC-----CCeeEEEEeCCCCh--------hH-
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHY-----TKLKVPEVRGPVTVVSG-----KKRRLQFVECPNDI--------NG- 133 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~-----~~~~~~tt~~~Iti~~~-----~k~rl~fIDtPGdl--------~s- 133 (1068)
..+-.+|+|+|++++|||||+|.|++.. ......+|+| |.+... .+.+++|+||||-. ..
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~g-i~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKG-IWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccc-eEEEeccccCCCcceEEEEecCCcCccccCchhhhh
Confidence 3566889999999999999999999982 1223344554 443221 35799999999921 11
Q ss_pred HHHHHH--hcCEEEEEEeCC
Q 046721 134 MIDCAK--FADLALLLIDAS 151 (1068)
Q Consensus 134 mld~ak--vADlVLlVIDas 151 (1068)
.+-++. .+|++|+.++..
T Consensus 83 ~~~~l~~llss~~i~n~~~~ 102 (224)
T cd01851 83 RLFALATLLSSVLIYNSWET 102 (224)
T ss_pred HHHHHHHHHhCEEEEeccCc
Confidence 233333 499999999875
No 315
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.96 E-value=4.3e-05 Score=81.56 Aligned_cols=143 Identities=16% Similarity=0.207 Sum_probs=83.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccC-C-------C---------Cc----eeccEE-EE------------------
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKL-K-------V---------PE----VRGPVT-VV------------------ 115 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~-~-------~---------~t----t~~~It-i~------------------ 115 (1068)
|..|+|+|++|+|||||++.|++..... . . .. ....+. +.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 80 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMNLE 80 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHHHH
Confidence 6789999999999999999998752100 0 0 00 000110 00
Q ss_pred -------eCCCeeEEEEeCCC-ChhHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCc-H
Q 046721 116 -------SGKKRRLQFVECPN-DINGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTD-K 186 (1068)
Q Consensus 116 -------~~~k~rl~fIDtPG-dl~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~-~ 186 (1068)
...+..++||++.| .+..+++ ...+|.+|.|+|+..+..... ..... .... =++|+||+|+... .
T Consensus 81 ~L~~l~~~~~~~D~iiIEt~G~~l~~~~~-~~l~~~~i~vvD~~~~~~~~~-~~~~q---i~~a-d~~~~~k~d~~~~~~ 154 (199)
T TIGR00101 81 AVAEMEARFPPLEMVFIESGGDNLSATFS-PELADLTIFVIDVAAGDKIPR-KGGPG---ITRS-DLLVINKIDLAPMVG 154 (199)
T ss_pred HHHHHHhcCCCCCEEEEECCCCCcccccc-hhhhCcEEEEEEcchhhhhhh-hhHhH---hhhc-cEEEEEhhhcccccc
Confidence 00134677888888 3333332 234789999999986554211 10011 1122 2789999999842 1
Q ss_pred HHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchHHHHH
Q 046721 187 KKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 187 k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~ 234 (1068)
.++..+.+.++.. .+.+++|.+||++| .++..+..+|.
T Consensus 155 ~~~~~~~~~~~~~-----~~~~~i~~~Sa~~g-----~gi~el~~~i~ 192 (199)
T TIGR00101 155 ADLGVMERDAKKM-----RGEKPFIFTNLKTK-----EGLDTVIDWIE 192 (199)
T ss_pred ccHHHHHHHHHHh-----CCCCCEEEEECCCC-----CCHHHHHHHHH
Confidence 2344444544433 35799999999966 56666665553
No 316
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.94 E-value=4.5e-05 Score=76.48 Aligned_cols=78 Identities=13% Similarity=0.192 Sum_probs=57.3
Q ss_pred hHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhC--CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCe
Q 046721 132 NGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNH--GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAK 209 (1068)
Q Consensus 132 ~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~--GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~k 209 (1068)
..+..++..||+||+|+|+..+.......+...+... +.| +|+|+||+|+..+ ..+....+.++.. +..
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~-~iivlNK~DL~~~-~~~~~~~~~~~~~-------~~~ 73 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKK-NILLLNKADLLTE-EQRKAWAEYFKKE-------GIV 73 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCc-EEEEEechhcCCH-HHHHHHHHHHHhc-------CCe
Confidence 4577889999999999999988877766777777665 777 7899999999753 3333333322211 357
Q ss_pred EEEEecccC
Q 046721 210 LFKLSGLIQ 218 (1068)
Q Consensus 210 Vf~ISAl~g 218 (1068)
++++||+++
T Consensus 74 ii~iSa~~~ 82 (141)
T cd01857 74 VVFFSALKE 82 (141)
T ss_pred EEEEEecCC
Confidence 899999876
No 317
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=8.6e-05 Score=74.24 Aligned_cols=107 Identities=19% Similarity=0.222 Sum_probs=69.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc-cCCCCceecc--EE-E-EeCCCeeEEEEeCCC--ChhH-HHHHHHhcCEEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT-KLKVPEVRGP--VT-V-VSGKKRRLQFVECPN--DING-MIDCAKFADLALLLI 148 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~-~~~~~tt~~~--It-i-~~~~k~rl~fIDtPG--dl~s-mld~akvADlVLlVI 148 (1068)
+.|++||..|+|||.|++.++...- .....|..-. |. + +.+.+.+++++||.| .|.+ +-...+.|..+|||.
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvy 87 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEE
Confidence 5789999999999999999887632 1111111111 11 1 235688999999999 5777 445678999999999
Q ss_pred eCCCCCchh-HHHHHHHHHhC---CCCcEEEEEeCCCcCC
Q 046721 149 DASHGFEME-TFEFLNLMQNH---GLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 149 Das~g~e~~-t~eiL~~L~~~---GlP~vIvVLNKiDlvk 184 (1068)
|.+....-. .-+.|..++.. .+- -|+|-||+|+..
T Consensus 88 discqpsfdclpewlreie~yan~kvl-kilvgnk~d~~d 126 (213)
T KOG0095|consen 88 DISCQPSFDCLPEWLREIEQYANNKVL-KILVGNKIDLAD 126 (213)
T ss_pred ecccCcchhhhHHHHHHHHHHhhcceE-EEeeccccchhh
Confidence 998643211 11333333332 222 377899999875
No 318
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.92 E-value=0.00012 Score=83.52 Aligned_cols=128 Identities=20% Similarity=0.265 Sum_probs=73.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcccc----------CCCC----------ceeccEEEEe-----------------
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTK----------LKVP----------EVRGPVTVVS----------------- 116 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~----------~~~~----------tt~~~Iti~~----------------- 116 (1068)
.+|.+|+++|++|+||||++..|...... .... ..+..+.++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998774210 0000 0011122211
Q ss_pred --CCCeeEEEEeCCCChh----------HHHHHHH-----hcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeC
Q 046721 117 --GKKRRLQFVECPNDIN----------GMIDCAK-----FADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTH 179 (1068)
Q Consensus 117 --~~k~rl~fIDtPGdl~----------smld~ak-----vADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNK 179 (1068)
..+..++||||||... .+...+. ..+-++||+||+.+..... .........++ .-+|+||
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~a~~f~~~~~~--~giIlTK 268 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-QAKAFHEAVGL--TGIILTK 268 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-HHHHHHhhCCC--CEEEEEC
Confidence 1245799999999432 1233221 3577999999997653222 22222222344 3569999
Q ss_pred CCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 180 LDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 180 iDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
+|.....-.+-.+... + +.+|.+++
T Consensus 269 lD~t~~~G~~l~~~~~----~------~~Pi~~v~ 293 (318)
T PRK10416 269 LDGTAKGGVVFAIADE----L------GIPIKFIG 293 (318)
T ss_pred CCCCCCccHHHHHHHH----H------CCCEEEEe
Confidence 9976532222222211 1 77899998
No 319
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=97.91 E-value=5.9e-05 Score=76.42 Aligned_cols=134 Identities=19% Similarity=0.192 Sum_probs=82.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCCCCceec---cEEE--EeCCCeeEEEEeCCC--ChhH-HHHHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRG---PVTV--VSGKKRRLQFVECPN--DING-MIDCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~---~Iti--~~~~k~rl~fIDtPG--dl~s-mld~akvADlVLlV 147 (1068)
.+.|.|||-+|||||+|+-+++.....+...+|-| .+.. +.+++.++.++||.| .|.. +-...+.|-.||+|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlV 90 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILV 90 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEE
Confidence 37899999999999999999988754444333322 1222 336688999999999 3554 45567899999999
Q ss_pred EeCCCC--CchhH---HHHHHHHHhCCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEeccc
Q 046721 148 IDASHG--FEMET---FEFLNLMQNHGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLI 217 (1068)
Q Consensus 148 IDas~g--~e~~t---~eiL~~L~~~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~ 217 (1068)
.|.+.. |...+ .++=.....+.+- .|+|-||+|.-.+.. ..++-.+..+.. .+-++..||++
T Consensus 91 YDVT~Rdtf~kLd~W~~Eld~Ystn~dii-kmlVgNKiDkes~R~V~reEG~kfAr~h-------~~LFiE~SAkt 158 (209)
T KOG0080|consen 91 YDVTSRDTFVKLDIWLKELDLYSTNPDII-KMLVGNKIDKESERVVDREEGLKFARKH-------RCLFIECSAKT 158 (209)
T ss_pred EEccchhhHHhHHHHHHHHHhhcCCccHh-HhhhcccccchhcccccHHHHHHHHHhh-------CcEEEEcchhh
Confidence 999742 21111 1121122234555 478999999753211 112222222211 45567788874
No 320
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.85 E-value=0.00014 Score=85.91 Aligned_cols=108 Identities=14% Similarity=0.160 Sum_probs=65.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccc---------cC-CC----------CceeccEEEE---eC------------
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYT---------KL-KV----------PEVRGPVTVV---SG------------ 117 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~---------~~-~~----------~tt~~~Iti~---~~------------ 117 (1068)
.++|.+|+++|++|+||||++..|...+. .. +. ......+.+. ..
T Consensus 97 ~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~ 176 (429)
T TIGR01425 97 KGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVE 176 (429)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHH
Confidence 45689999999999999999988874210 00 00 0001112211 10
Q ss_pred ----CCeeEEEEeCCCChh---HHH----HH--HHhcCEEEEEEeCCCCCchhHHHHHHHHHh-CCCCcEEEEEeCCCcC
Q 046721 118 ----KKRRLQFVECPNDIN---GMI----DC--AKFADLALLLIDASHGFEMETFEFLNLMQN-HGLPNVMGVLTHLDKF 183 (1068)
Q Consensus 118 ----~k~rl~fIDtPGdl~---sml----d~--akvADlVLlVIDas~g~e~~t~eiL~~L~~-~GlP~vIvVLNKiDlv 183 (1068)
....++||||||.+. .++ .. +-..|.++||+||+.|.+. ...+..+.. .++ .-+|+||+|..
T Consensus 177 ~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~--~g~IlTKlD~~ 252 (429)
T TIGR01425 177 KFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDV--GSVIITKLDGH 252 (429)
T ss_pred HHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCC--cEEEEECccCC
Confidence 146899999999432 122 22 2246889999999877543 333444432 344 35689999987
Q ss_pred C
Q 046721 184 T 184 (1068)
Q Consensus 184 k 184 (1068)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 5
No 321
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.00012 Score=77.67 Aligned_cols=135 Identities=19% Similarity=0.205 Sum_probs=81.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc-ccCCCCce---eccEE-EEeCCCeeEEEEeCCC--ChhHHH-HHHHhcCEEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEV---RGPVT-VVSGKKRRLQFVECPN--DINGMI-DCAKFADLALLLI 148 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt---~~~It-i~~~~k~rl~fIDtPG--dl~sml-d~akvADlVLlVI 148 (1068)
+.|++||-++||||-|+.+++..- .-..-.|. -...+ .+.++....+|+||.| .+.++. ...+.|-.+|+|.
T Consensus 15 FKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVY 94 (222)
T KOG0087|consen 15 FKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 94 (222)
T ss_pred EEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEE
Confidence 569999999999999999988762 11111111 11111 2234566889999999 344533 3458899999999
Q ss_pred eCCCCCchh-HHHHHHHHHhC---CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 149 DASHGFEME-TFEFLNLMQNH---GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 149 Das~g~e~~-t~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
|.+...+=+ ...-|..|+.| .++ +|+|-||+||..-+.--.+.-+.+.+. .+..++.+||+.+
T Consensus 95 DITr~~Tfenv~rWL~ELRdhad~niv-imLvGNK~DL~~lraV~te~~k~~Ae~------~~l~f~EtSAl~~ 161 (222)
T KOG0087|consen 95 DITRRQTFENVERWLKELRDHADSNIV-IMLVGNKSDLNHLRAVPTEDGKAFAEK------EGLFFLETSALDA 161 (222)
T ss_pred echhHHHHHHHHHHHHHHHhcCCCCeE-EEEeecchhhhhccccchhhhHhHHHh------cCceEEEeccccc
Confidence 997533211 12345555555 455 788999999975111111112222222 2556788999855
No 322
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=5.2e-05 Score=77.40 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=74.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEE-EEeCCCeeEEEEeCCCChhH---HHHHHHhcCEEEEEEe
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVT-VVSGKKRRLQFVECPNDING---MIDCAKFADLALLLID 149 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~It-i~~~~k~rl~fIDtPGdl~s---mld~akvADlVLlVID 149 (1068)
..+..+.++|..|+|||||++.|-.....+.++|- +|.+ -..-.+-+++.+|.-|...+ .-++...+|.||+++|
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTl-HPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvd 96 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTL-HPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVD 96 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCc-CCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeee
Confidence 34667899999999999999999877544433331 2222 12223568899999997665 5577899999999999
Q ss_pred CCCC--CchhHH---HHHHHHHhCCCCcEEEEEeCCCcCC
Q 046721 150 ASHG--FEMETF---EFLNLMQNHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 150 as~g--~e~~t~---eiL~~L~~~GlP~vIvVLNKiDlvk 184 (1068)
|.+. +.+.-. .+|+.-.-..+| +++..||+|...
T Consensus 97 a~d~er~~es~~eld~ll~~e~la~vp-~lilgnKId~p~ 135 (193)
T KOG0077|consen 97 AYDQERFAESKKELDALLSDESLATVP-FLILGNKIDIPY 135 (193)
T ss_pred hhhHHHhHHHHHHHHHHHhHHHHhcCc-ceeecccccCCC
Confidence 9632 222111 233333335788 678999999875
No 323
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.00023 Score=71.37 Aligned_cols=135 Identities=18% Similarity=0.194 Sum_probs=78.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhc-cccCCCCceeccE---EEE-eCCCeeEEEEeCCC-ChhHHHH--HHHhcCEEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPV---TVV-SGKKRRLQFVECPN-DINGMID--CAKFADLALLLI 148 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~I---ti~-~~~k~rl~fIDtPG-dl~smld--~akvADlVLlVI 148 (1068)
..+.|+|.+.+|||+|+.+-++. .+..-+.|..-.. |+. +.+...++++||.| ...+.|. ..+.|+.+||+.
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmy 101 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEE
Confidence 47899999999999999888876 3333333321001 222 23466889999999 3444443 358999999999
Q ss_pred eCCCCCch---hHH-HHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 149 DASHGFEM---ETF-EFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 149 Das~g~e~---~t~-eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
|.+..-.- +++ -.+......+.| ||+|.||+|+-..+---.+-...|-..+ +..+|..||+.+
T Consensus 102 DitNeeSf~svqdw~tqIktysw~naq-vilvgnKCDmd~eRvis~e~g~~l~~~L------GfefFEtSaK~N 168 (193)
T KOG0093|consen 102 DITNEESFNSVQDWITQIKTYSWDNAQ-VILVGNKCDMDSERVISHERGRQLADQL------GFEFFETSAKEN 168 (193)
T ss_pred ecCCHHHHHHHHHHHHHheeeeccCce-EEEEecccCCccceeeeHHHHHHHHHHh------ChHHhhhccccc
Confidence 98742111 111 011111123566 9999999998643211111111122222 446788888754
No 324
>PTZ00099 rab6; Provisional
Probab=97.79 E-value=0.0001 Score=77.06 Aligned_cols=108 Identities=15% Similarity=0.115 Sum_probs=65.6
Q ss_pred CCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEEeCCCC--CchhHHHHHHHHHhC--CCCcEEEEEeCCCcCCcHH-H
Q 046721 117 GKKRRLQFVECPND--INGM-IDCAKFADLALLLIDASHG--FEMETFEFLNLMQNH--GLPNVMGVLTHLDKFTDKK-K 188 (1068)
Q Consensus 117 ~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVIDas~g--~e~~t~eiL~~L~~~--GlP~vIvVLNKiDlvk~~k-~ 188 (1068)
+....+.|+||||. +..+ -..++.||++|||+|++.. ++.....+..++... ++| +|+|.||+|+..... .
T Consensus 26 ~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~~v~ 104 (176)
T PTZ00099 26 EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVI-IALVGNKTDLGDLRKVT 104 (176)
T ss_pred CEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccCCC
Confidence 34678999999994 4443 3457899999999999874 333222333333332 455 789999999863110 1
Q ss_pred HHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchHHHHHHhh
Q 046721 189 LRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 189 l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k 237 (1068)
........ .. -...+|.+||++| ..+..+...|....
T Consensus 105 ~~e~~~~~-~~------~~~~~~e~SAk~g-----~nV~~lf~~l~~~l 141 (176)
T PTZ00099 105 YEEGMQKA-QE------YNTMFHETSAKAG-----HNIKVLFKKIAAKL 141 (176)
T ss_pred HHHHHHHH-HH------cCCEEEEEECCCC-----CCHHHHHHHHHHHH
Confidence 11222211 11 1456789999965 55666666665444
No 325
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.79 E-value=0.00026 Score=79.30 Aligned_cols=129 Identities=20% Similarity=0.206 Sum_probs=74.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccccC--C-----CCc-------------eeccEEEEe----------------
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYTKL--K-----VPE-------------VRGPVTVVS---------------- 116 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~--~-----~~t-------------t~~~Iti~~---------------- 116 (1068)
..+|.+|+++|++|+||||++..|...+... . ..+ ....+.++.
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQ 148 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH
Confidence 3568999999999999999888886532100 0 000 011122211
Q ss_pred ---CCCeeEEEEeCCCChh----------HHHHHHH-----hcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEe
Q 046721 117 ---GKKRRLQFVECPNDIN----------GMIDCAK-----FADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLT 178 (1068)
Q Consensus 117 ---~~k~rl~fIDtPGdl~----------smld~ak-----vADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLN 178 (1068)
..+..++||||||... .+.+.+. .+|.++||+|++.+.+.. .......+..++- -+|+|
T Consensus 149 ~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~-~~~~~f~~~~~~~--g~IlT 225 (272)
T TIGR00064 149 KAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNAL-EQAKVFNEAVGLT--GIILT 225 (272)
T ss_pred HHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHH-HHHHHHHhhCCCC--EEEEE
Confidence 1246789999999432 1222332 389999999998654321 1223333334554 46899
Q ss_pred CCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 179 HLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 179 KiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
|+|.....-.+-.+... + +.+|.+++
T Consensus 226 KlDe~~~~G~~l~~~~~----~------~~Pi~~~~ 251 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYE----L------KLPIKFIG 251 (272)
T ss_pred ccCCCCCccHHHHHHHH----H------CcCEEEEe
Confidence 99987533222222221 1 57888887
No 326
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.77 E-value=6e-05 Score=87.17 Aligned_cols=75 Identities=17% Similarity=0.167 Sum_probs=55.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc---cCCCCceeccEE-EEeCC-----------------CeeEEEEeCCCC-----
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT---KLKVPEVRGPVT-VVSGK-----------------KRRLQFVECPND----- 130 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~---~~~~~tt~~~It-i~~~~-----------------k~rl~fIDtPGd----- 130 (1068)
..++|||+||+|||||+|+|++... ...+.+|..|.. ++... ..++.|+|.||.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 5789999999999999999999854 223455443333 22211 247899999982
Q ss_pred ----hh-HHHHHHHhcCEEEEEEeCC
Q 046721 131 ----IN-GMIDCAKFADLALLLIDAS 151 (1068)
Q Consensus 131 ----l~-smld~akvADlVLlVIDas 151 (1068)
+. ..+..++.+|++++||++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 32 4899999999999999986
No 327
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.77 E-value=0.00011 Score=75.01 Aligned_cols=87 Identities=15% Similarity=0.138 Sum_probs=57.2
Q ss_pred HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhC--CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEE
Q 046721 134 MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNH--GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLF 211 (1068)
Q Consensus 134 mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~--GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf 211 (1068)
++.+++.||+||+|+|++.++......+...+... +.| +|+|+||+|++++ ..+......+.+ . +... +|
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p-~ilVlNKiDl~~~-~~~~~~~~~~~~----~-~~~~-~~ 73 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKH-LIFVLNKCDLVPT-WVTARWVKILSK----E-YPTI-AF 73 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCC-EEEEEEchhcCCH-HHHHHHHHHHhc----C-CcEE-EE
Confidence 46778999999999999987766666677766543 477 8999999999863 333333333221 1 2222 68
Q ss_pred EEecccCCcCCchhhcchHHHH
Q 046721 212 KLSGLIQGKYTKKDIGNLAEFI 233 (1068)
Q Consensus 212 ~ISAl~g~~y~~~ei~nLlR~I 233 (1068)
++||+.+ ..+..|+..|
T Consensus 74 ~iSa~~~-----~~~~~L~~~l 90 (157)
T cd01858 74 HASINNP-----FGKGSLIQLL 90 (157)
T ss_pred Eeecccc-----ccHHHHHHHH
Confidence 8999865 3444455444
No 328
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.77 E-value=4.3e-05 Score=77.82 Aligned_cols=53 Identities=23% Similarity=0.326 Sum_probs=40.9
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEEEEeCCCeeEEEEeCCC
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVTVVSGKKRRLQFVECPN 129 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~Iti~~~~k~rl~fIDtPG 129 (1068)
.+..|+|+|+||+|||||+|+|++.. ++..+.+|+....+.. ...+.++||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL--DNKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe--cCCEEEEECCC
Confidence 45789999999999999999999963 3445566666555433 35799999998
No 329
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0003 Score=80.68 Aligned_cols=136 Identities=21% Similarity=0.403 Sum_probs=86.2
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccccCC-----CCc-eeccEEE-------Ee-CCCeeEEEEeCCC--C------
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYTKLK-----VPE-VRGPVTV-------VS-GKKRRLQFVECPN--D------ 130 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~-----~~t-t~~~Iti-------~~-~~k~rl~fIDtPG--d------ 130 (1068)
.|-.+++.|+|.+|.|||||||+|+....... ... ....+.+ .. +-+.++++||||| |
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence 46679999999999999999999988621110 000 0001111 11 2367999999998 1
Q ss_pred -hhHHHHHH---------------------HhcCEEEEEEeCC-CCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHH
Q 046721 131 -INGMIDCA---------------------KFADLALLLIDAS-HGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKK 187 (1068)
Q Consensus 131 -l~smld~a---------------------kvADlVLlVIDas-~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k 187 (1068)
+..+++.+ ...+++|+.|..+ +|+.+.+.+++..+. ..+. +|.|+-|.|.+.+ .
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~-~~vN-iIPVI~KaD~lT~-~ 174 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS-KKVN-LIPVIAKADTLTK-D 174 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh-cccc-ccceeeccccCCH-H
Confidence 11111111 2568999999875 678888888777653 4444 8899999999974 4
Q ss_pred HHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 188 KLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 188 ~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
.+...++.+.+-+.. ...++|...
T Consensus 175 El~~~K~~I~~~i~~---~nI~vf~fp 198 (366)
T KOG2655|consen 175 ELNQFKKRIRQDIEE---HNIKVFDFP 198 (366)
T ss_pred HHHHHHHHHHHHHHH---cCcceecCC
Confidence 566666665544321 244555443
No 330
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.73 E-value=4e-05 Score=80.55 Aligned_cols=52 Identities=27% Similarity=0.285 Sum_probs=38.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc-----------ccCCCCceeccEEEEeCCCeeEEEEeCCC
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY-----------TKLKVPEVRGPVTVVSGKKRRLQFVECPN 129 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~-----------~~~~~~tt~~~Iti~~~~k~rl~fIDtPG 129 (1068)
+..|+++|.+|+|||||||+|++.. ++..+.+|+.+..+.... .+.+|||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~--~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN--GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC--CCEEEeCcC
Confidence 4679999999999999999999842 223445555554443332 689999998
No 331
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.70 E-value=5.2e-05 Score=86.77 Aligned_cols=53 Identities=26% Similarity=0.310 Sum_probs=41.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEEEEeCCCeeEEEEeCCC
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVTVVSGKKRRLQFVECPN 129 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~Iti~~~~k~rl~fIDtPG 129 (1068)
....|.|||.||||||||||+|++.. ++..+.+|++...+.... .+.++||||
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~--~i~LlDtPG 186 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD--GIYLLDTPG 186 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC--CeEEecCCC
Confidence 45679999999999999999999974 455666666655555443 589999999
No 332
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.67 E-value=8e-05 Score=83.87 Aligned_cols=54 Identities=24% Similarity=0.336 Sum_probs=40.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEEEEeCCCeeEEEEeCCC
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVTVVSGKKRRLQFVECPN 129 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~Iti~~~~k~rl~fIDtPG 129 (1068)
..+..|+|||.||||||||||+|++.. ++..+.+|++...+.. ...+.++||||
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~--~~~~~l~DtPG 175 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL--GKGLELLDTPG 175 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe--CCcEEEEECCC
Confidence 456889999999999999999999863 3445555555433333 34689999999
No 333
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00033 Score=81.49 Aligned_cols=128 Identities=20% Similarity=0.203 Sum_probs=71.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcccc----CCC-----Cce---------------eccEEEEe-----------CCCe
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTK----LKV-----PEV---------------RGPVTVVS-----------GKKR 120 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~----~~~-----~tt---------------~~~Iti~~-----------~~k~ 120 (1068)
..+|+++|++|+||||++..|...+.. ..+ .+. .-++.... ..+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 568999999999999999999865311 000 000 00111111 1356
Q ss_pred eEEEEeCCCCh------hHHHHHH---HhcCEEEEEEeCCCCCchhHHHHHHHHH-hCCCCc------EEEEEeCCCcCC
Q 046721 121 RLQFVECPNDI------NGMIDCA---KFADLALLLIDASHGFEMETFEFLNLMQ-NHGLPN------VMGVLTHLDKFT 184 (1068)
Q Consensus 121 rl~fIDtPGdl------~smld~a---kvADlVLlVIDas~g~e~~t~eiL~~L~-~~GlP~------vIvVLNKiDlvk 184 (1068)
.++||||+|.. ...+..+ ..++-++||++++.+.+... +++.... ..+.|. .=+|+||+|...
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~-evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN-EVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH-HHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 89999999932 1222322 33456799999987665433 2233222 222221 135789999875
Q ss_pred cHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 185 DKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 185 ~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
..-.+ ...+.. .+.+|.|++
T Consensus 296 ~~G~~---l~~~~~-------~~lPi~yvt 315 (374)
T PRK14722 296 NLGGV---LDTVIR-------YKLPVHYVS 315 (374)
T ss_pred CccHH---HHHHHH-------HCcCeEEEe
Confidence 32222 222211 266788887
No 334
>PRK14974 cell division protein FtsY; Provisional
Probab=97.64 E-value=0.00012 Score=84.00 Aligned_cols=127 Identities=20% Similarity=0.207 Sum_probs=72.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccC-------CCCcee-------------ccEEEEe-----------------
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKL-------KVPEVR-------------GPVTVVS----------------- 116 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~-------~~~tt~-------------~~Iti~~----------------- 116 (1068)
..|.+|+++|++|+||||++..|....... ...+.+ -++.+..
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEH 217 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHH
Confidence 458899999999999999888887532100 000000 0111110
Q ss_pred --CCCeeEEEEeCCCChh---HHHHH------HHhcCEEEEEEeCCCCCchhHHHHHHHH-HhCCCCcEEEEEeCCCcCC
Q 046721 117 --GKKRRLQFVECPNDIN---GMIDC------AKFADLALLLIDASHGFEMETFEFLNLM-QNHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 117 --~~k~rl~fIDtPGdl~---smld~------akvADlVLlVIDas~g~e~~t~eiL~~L-~~~GlP~vIvVLNKiDlvk 184 (1068)
..+..+++|||+|.+. .+++. .-..|.++||+|+..|.+ ..+.+... ...++. -+|+||+|...
T Consensus 218 ~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d--~~~~a~~f~~~~~~~--giIlTKlD~~~ 293 (336)
T PRK14974 218 AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND--AVEQAREFNEAVGID--GVILTKVDADA 293 (336)
T ss_pred HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh--HHHHHHHHHhcCCCC--EEEEeeecCCC
Confidence 1234699999999542 12222 224789999999976542 22222322 235665 45899999875
Q ss_pred cHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 185 DKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 185 ~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
..-.+-.+.. . .+.+|.+++
T Consensus 294 ~~G~~ls~~~----~------~~~Pi~~i~ 313 (336)
T PRK14974 294 KGGAALSIAY----V------IGKPILFLG 313 (336)
T ss_pred CccHHHHHHH----H------HCcCEEEEe
Confidence 3222222211 1 267899988
No 335
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.64 E-value=8.7e-05 Score=83.10 Aligned_cols=55 Identities=24% Similarity=0.315 Sum_probs=41.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEEEEeCCCeeEEEEeCCCC
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVTVVSGKKRRLQFVECPND 130 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd 130 (1068)
..+..|+|||.||+|||||||+|++.. ++..+.+|+....+... ..+.++||||-
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~--~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS--DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC--CCEEEEECCCc
Confidence 456889999999999999999999853 34455555554433332 36899999993
No 336
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.63 E-value=4.7e-05 Score=89.31 Aligned_cols=53 Identities=23% Similarity=0.279 Sum_probs=44.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEEEEeCCCeeEEEEeCCCC
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVTVVSGKKRRLQFVECPND 130 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd 130 (1068)
-.+|++||+|||||||+||+|+|.. ++.++..|++--||.... .+.+.||||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~--~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP--SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC--CceecCCCCc
Confidence 3789999999999999999999983 677788888777766654 7888999994
No 337
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.63 E-value=0.00035 Score=70.93 Aligned_cols=90 Identities=19% Similarity=0.172 Sum_probs=59.8
Q ss_pred HHHH-HHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEE
Q 046721 134 MIDC-AKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFK 212 (1068)
Q Consensus 134 mld~-akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ 212 (1068)
++.. ...||++|+|+|++.+......+++..+...+.| +|+|+||+|+... ....... .+... .+.++++
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~~-~~~~~~~-~~~~~------~~~~~~~ 75 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKK-LLIVLNKADLVPK-EVLEKWK-SIKES------EGIPVVY 75 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCc-EEEEEEhHHhCCH-HHHHHHH-HHHHh------CCCcEEE
Confidence 4444 4569999999999887666666677767667888 8999999999752 2222211 11111 2467999
Q ss_pred EecccCCcCCchhhcchHHHHHHhh
Q 046721 213 LSGLIQGKYTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 213 ISAl~g~~y~~~ei~nLlR~I~~~k 237 (1068)
+||+++ .++..|...|....
T Consensus 76 iSa~~~-----~gi~~L~~~l~~~~ 95 (156)
T cd01859 76 VSAKER-----LGTKILRRTIKELA 95 (156)
T ss_pred EEcccc-----ccHHHHHHHHHHHH
Confidence 999865 55666666665443
No 338
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.00067 Score=78.97 Aligned_cols=127 Identities=16% Similarity=0.204 Sum_probs=74.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccC-------CCCce-------------eccEEEE--eC-----------C---
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKL-------KVPEV-------------RGPVTVV--SG-----------K--- 118 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~-------~~~tt-------------~~~Iti~--~~-----------~--- 118 (1068)
.|.+|+++|++|+||||++..|....... ...+. ...+.+. .. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 46899999999999999999997532100 00000 0111111 10 1
Q ss_pred CeeEEEEeCCCCh-------hHHHHHH--HhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHH
Q 046721 119 KRRLQFVECPNDI-------NGMIDCA--KFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKL 189 (1068)
Q Consensus 119 k~rl~fIDtPGdl-------~smld~a--kvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l 189 (1068)
+..++||||||.. ..+...+ ...|.++||+||+.+.. ....++..+...++.. +++||+|.....-.+
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~-d~~~i~~~F~~~~idg--lI~TKLDET~k~G~i 396 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIHIDG--IVFTKFDETASSGEL 396 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH-HHHHHHHHhcCCCCCE--EEEEcccCCCCccHH
Confidence 2479999999932 1222222 23578899999874332 2245666666667764 489999987533222
Q ss_pred HHHHHHHHHHhcccccCCCeEEEEe
Q 046721 190 RKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 190 ~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
-.+... .+.+|.+++
T Consensus 397 Lni~~~----------~~lPIsyit 411 (436)
T PRK11889 397 LKIPAV----------SSAPIVLMT 411 (436)
T ss_pred HHHHHH----------HCcCEEEEe
Confidence 222211 266777777
No 339
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=97.58 E-value=0.00018 Score=71.69 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=74.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCCCCceeccE-EEEeCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEEeCC
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPV-TVVSGKKRRLQFVECPND--INGM-IDCAKFADLALLLIDAS 151 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~I-ti~~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVIDas 151 (1068)
-+.|.++|..|+||||+++.|.+....+...|..-.+ ++......+++++|..|+ +... -......|.+|+|||++
T Consensus 17 EirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~ 96 (185)
T KOG0074|consen 17 EIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDST 96 (185)
T ss_pred eEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCC
Confidence 4788999999999999999999987665444321111 233445689999999884 5554 34678899999999976
Q ss_pred CC--CchhHHHHHHHHHh---CCCCcEEEEEeCCCcCC
Q 046721 152 HG--FEMETFEFLNLMQN---HGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 152 ~g--~e~~t~eiL~~L~~---~GlP~vIvVLNKiDlvk 184 (1068)
.. +++...++..++.. ..+| |.+..||-|++.
T Consensus 97 D~krfeE~~~el~ELleeeKl~~vp-vlIfankQdllt 133 (185)
T KOG0074|consen 97 DEKRFEEISEELVELLEEEKLAEVP-VLIFANKQDLLT 133 (185)
T ss_pred chHhHHHHHHHHHHHhhhhhhhccc-eeehhhhhHHHh
Confidence 32 34334444444443 4566 677788888764
No 340
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.55 E-value=0.00014 Score=73.04 Aligned_cols=51 Identities=24% Similarity=0.369 Sum_probs=35.5
Q ss_pred EEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEEEEeCCCeeEEEEeCCCC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVTVVSGKKRRLQFVECPND 130 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd 130 (1068)
.|+++|.+|+|||||+|+|++.. ++..+.+++....+... ..+.++||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLT--PTITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeC--CCEEEEECCCc
Confidence 79999999999999999999863 22233333332222222 26899999993
No 341
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.55 E-value=0.00039 Score=70.84 Aligned_cols=81 Identities=22% Similarity=0.247 Sum_probs=54.3
Q ss_pred CEEEEEEeCCCCCchhHHHHH-HHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCc
Q 046721 142 DLALLLIDASHGFEMETFEFL-NLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGK 220 (1068)
Q Consensus 142 DlVLlVIDas~g~e~~t~eiL-~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~ 220 (1068)
|+||+|+|+..+.......+. ..+...+.| +|+|+||+|++.. ..+......+... .+..++++||+++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p-~IiVlNK~Dl~~~-~~~~~~~~~~~~~------~~~~ii~vSa~~~-- 70 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKK-LILVLNKADLVPK-EVLRKWLAYLRHS------YPTIPFKISATNG-- 70 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCC-EEEEEechhcCCH-HHHHHHHHHHHhh------CCceEEEEeccCC--
Confidence 899999999877665555555 466667888 8999999999763 3222222222211 2567999999865
Q ss_pred CCchhhcchHHHHHH
Q 046721 221 YTKKDIGNLAEFISV 235 (1068)
Q Consensus 221 y~~~ei~nLlR~I~~ 235 (1068)
..+..|.+.|..
T Consensus 71 ---~gi~~L~~~i~~ 82 (155)
T cd01849 71 ---QGIEKKESAFTK 82 (155)
T ss_pred ---cChhhHHHHHHH
Confidence 456666666644
No 342
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.54 E-value=0.0016 Score=70.29 Aligned_cols=135 Identities=24% Similarity=0.341 Sum_probs=81.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccC----------CCCcee-ccEEEEe-C--CCeeEEEEeCCC--C-hh----
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKL----------KVPEVR-GPVTVVS-G--KKRRLQFVECPN--D-IN---- 132 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~----------~~~tt~-~~Iti~~-~--~k~rl~fIDtPG--d-l~---- 132 (1068)
|--++|.|||.++.|||||+|.|..+.... .+.|+. ..+|.+. . -+-++++||||| | ++
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 445899999999999999999998863211 222222 2223222 1 266899999998 2 11
Q ss_pred -------------HHHH-HH----------HhcCEEEEEEeCC-CCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHH
Q 046721 133 -------------GMID-CA----------KFADLALLLIDAS-HGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKK 187 (1068)
Q Consensus 133 -------------smld-~a----------kvADlVLlVIDas-~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k 187 (1068)
..|. .+ ..+..+|+.|.++ +.+.+-+.++|.-|. .+-+||.|+-|.|.+. -+
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt--~vvNvvPVIakaDtlT-le 200 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLT--EVVNVVPVIAKADTLT-LE 200 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHh--hhheeeeeEeeccccc-HH
Confidence 1111 11 2457889999886 445566677777664 2345888999999875 22
Q ss_pred HHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 188 KLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 188 ~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
.....++.+++.|.. .+..++|-.
T Consensus 201 Er~~FkqrI~~el~~---~~i~vYPq~ 224 (336)
T KOG1547|consen 201 ERSAFKQRIRKELEK---HGIDVYPQD 224 (336)
T ss_pred HHHHHHHHHHHHHHh---cCccccccc
Confidence 334445555544422 245555533
No 343
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.52 E-value=0.00036 Score=73.58 Aligned_cols=139 Identities=21% Similarity=0.293 Sum_probs=79.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccC---------CCC--------c-eeccEE-EEeCC-------------------
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKL---------KVP--------E-VRGPVT-VVSGK------------------- 118 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~---------~~~--------t-t~~~It-i~~~~------------------- 118 (1068)
+.|.|.|+||+|||+||-.++...-.. ... . ...++. +.++.
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD 93 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence 889999999999999998887742110 000 0 011111 22221
Q ss_pred --CeeEEEEeCCCChhHHHHHHHhcC-EEEEEEeCCCCCchhHHHHHHHHHhCCCC----cEEEEEeCCCcCCcH-HHHH
Q 046721 119 --KRRLQFVECPNDINGMIDCAKFAD-LALLLIDASHGFEMETFEFLNLMQNHGLP----NVMGVLTHLDKFTDK-KKLR 190 (1068)
Q Consensus 119 --k~rl~fIDtPGdl~smld~akvAD-lVLlVIDas~g~e~~t~eiL~~L~~~GlP----~vIvVLNKiDlvk~~-k~l~ 190 (1068)
...+.||+..|+|....+ -...| +-|+|||+++|-.--- .|-| .=++|+||.|++.-- .++.
T Consensus 94 ~~~~Dll~iEs~GNL~~~~s-p~L~d~~~v~VidvteGe~~P~---------K~gP~i~~aDllVInK~DLa~~v~~dle 163 (202)
T COG0378 94 FPDLDLLFIESVGNLVCPFS-PDLGDHLRVVVIDVTEGEDIPR---------KGGPGIFKADLLVINKTDLAPYVGADLE 163 (202)
T ss_pred CCcCCEEEEecCcceecccC-cchhhceEEEEEECCCCCCCcc---------cCCCceeEeeEEEEehHHhHHHhCccHH
Confidence 125667777664332111 12344 7888999887653210 1112 237899999998521 1122
Q ss_pred HHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchHHHHHH
Q 046721 191 KTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 191 ~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
...... ..+.+..+++.+|+++| +++..+++||..
T Consensus 164 vm~~da-----~~~np~~~ii~~n~ktg-----~G~~~~~~~i~~ 198 (202)
T COG0378 164 VMARDA-----KEVNPEAPIIFTNLKTG-----EGLDEWLRFIEP 198 (202)
T ss_pred HHHHHH-----HHhCCCCCEEEEeCCCC-----cCHHHHHHHHHh
Confidence 222222 23458999999999965 667777777743
No 344
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.51 E-value=6.1e-05 Score=87.49 Aligned_cols=105 Identities=16% Similarity=0.117 Sum_probs=61.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc--------ccCCCCceeccEEEEeCCCeeEEEEeCCCChh--HHHHHH--------
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY--------TKLKVPEVRGPVTVVSGKKRRLQFVECPNDIN--GMIDCA-------- 138 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~--------~~~~~~tt~~~Iti~~~~k~rl~fIDtPGdl~--smld~a-------- 138 (1068)
..|+|||.+|||||||||+|++.. ++..+.+|.+.+.+.. ...+.++||||-.. .+.+.+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~--~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~ 232 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL--DDGHSLYDTPGIINSHQMAHYLDKKDLKYI 232 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe--CCCCEEEECCCCCChhHhhhhcCHHHHhhc
Confidence 579999999999999999999852 3445555655443332 23568999999321 122211
Q ss_pred ---HhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC
Q 046721 139 ---KFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 139 ---kvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk 184 (1068)
+....+.+.++....+.......+..+...+.. +.+.+++-+.+.
T Consensus 233 ~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~-~~~~~~~~~~~h 280 (360)
T TIGR03597 233 TPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTS-FTFYVSNELNIH 280 (360)
T ss_pred CCCCccCceEEEeCCCCEEEEceEEEEEEecCCceE-EEEEccCCceeE
Confidence 334567777776544333332222333333332 555666655553
No 345
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.49 E-value=0.00048 Score=71.37 Aligned_cols=89 Identities=18% Similarity=0.182 Sum_probs=58.6
Q ss_pred hHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEE
Q 046721 132 NGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLF 211 (1068)
Q Consensus 132 ~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf 211 (1068)
..+...++.||+||+|+|++.+.......++..+ .+.| +|+|+||+|+... .......+.++. .+.+++
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~-~ilVlNK~Dl~~~-~~~~~~~~~~~~-------~~~~vi 79 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKP-RIIVLNKADLADP-KKTKKWLKYFES-------KGEKVL 79 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCC-EEEEEehhhcCCh-HHHHHHHHHHHh-------cCCeEE
Confidence 3467788999999999999877665555555544 3566 7899999999753 222222222111 135789
Q ss_pred EEecccCCcCCchhhcchHHHHHHh
Q 046721 212 KLSGLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 212 ~ISAl~g~~y~~~ei~nLlR~I~~~ 236 (1068)
++||+++ .++..|.+.|...
T Consensus 80 ~iSa~~~-----~gi~~L~~~l~~~ 99 (171)
T cd01856 80 FVNAKSG-----KGVKKLLKAAKKL 99 (171)
T ss_pred EEECCCc-----ccHHHHHHHHHHH
Confidence 9999854 5566666666544
No 346
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.00031 Score=70.28 Aligned_cols=143 Identities=16% Similarity=0.201 Sum_probs=89.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCC--ChhHHHHH-HHhcCEEEEEEeCCCC
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPN--DINGMIDC-AKFADLALLLIDASHG 153 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPG--dl~smld~-akvADlVLlVIDas~g 153 (1068)
-.|.++|..|+||+|++-.|---.+..+.++..-.+.-+..++-.++++|.-| ++....++ ....|.||+|||++..
T Consensus 19 ~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~ 98 (182)
T KOG0072|consen 19 MRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDR 98 (182)
T ss_pred eEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccch
Confidence 46889999999999866554322111122222111222344677888899866 67776665 4889999999999854
Q ss_pred C--chhHHHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHH-----HHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 154 F--EMETFEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKT-----KQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 154 ~--e~~t~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~v-----kk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
. .....++..+|++ ++ ..+++++||.|... .-...++ .+.|+.+. ..||..||.+|
T Consensus 99 dris~a~~el~~mL~E~eLq~-a~llv~anKqD~~~-~~t~~E~~~~L~l~~Lk~r~-------~~Iv~tSA~kg----- 164 (182)
T KOG0072|consen 99 DRISIAGVELYSMLQEEELQH-AKLLVFANKQDYSG-ALTRSEVLKMLGLQKLKDRI-------WQIVKTSAVKG----- 164 (182)
T ss_pred hhhhhhHHHHHHHhccHhhcC-ceEEEEeccccchh-hhhHHHHHHHhChHHHhhhe-------eEEEeeccccc-----
Confidence 3 3344577777765 45 44788999999753 1111222 34455553 46889999865
Q ss_pred hhhcchHHHH
Q 046721 224 KDIGNLAEFI 233 (1068)
Q Consensus 224 ~ei~nLlR~I 233 (1068)
.++...+.++
T Consensus 165 ~Gld~~~DWL 174 (182)
T KOG0072|consen 165 EGLDPAMDWL 174 (182)
T ss_pred cCCcHHHHHH
Confidence 4455555444
No 347
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.47 E-value=0.00053 Score=81.77 Aligned_cols=110 Identities=20% Similarity=0.210 Sum_probs=74.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEe---CCCeeEEEEeCCCCh---hHHHHHHHhcCEEEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVS---GKKRRLQFVECPNDI---NGMIDCAKFADLALLL 147 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~---~~k~rl~fIDtPGdl---~smld~akvADlVLlV 147 (1068)
.....|++||-.|+||||||-+|+...--..++..-..|+|.. ......+++|++.+- ..+...++.||+|++|
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lv 86 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLV 86 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEE
Confidence 4568899999999999999999998732222222223455432 234458899997643 3467789999999999
Q ss_pred EeCCCCCchh--HHHHHHHHHh-----CCCCcEEEEEeCCCcCC
Q 046721 148 IDASHGFEME--TFEFLNLMQN-----HGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 148 IDas~g~e~~--t~eiL~~L~~-----~GlP~vIvVLNKiDlvk 184 (1068)
.+++..-+.+ ...-|-.++. +.+| ||+|-||+|...
T Consensus 87 yavd~~~T~D~ist~WLPlir~~~~~~~~~P-VILvGNK~d~~~ 129 (625)
T KOG1707|consen 87 YAVDDESTVDRISTKWLPLIRQLFGDYHETP-VILVGNKSDNGD 129 (625)
T ss_pred EecCChHHhhhhhhhhhhhhhcccCCCccCC-EEEEeeccCCcc
Confidence 9887533221 2223333333 3467 999999999975
No 348
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.0011 Score=77.63 Aligned_cols=109 Identities=21% Similarity=0.229 Sum_probs=64.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcccc------C-----CCCc---------------eeccEEEEe-----------
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTK------L-----KVPE---------------VRGPVTVVS----------- 116 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~------~-----~~~t---------------t~~~Iti~~----------- 116 (1068)
..|.+|+++|++|+||||.+..|...+.. . ...+ ..-++.+..
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 34789999999999999988887653210 0 0000 001222111
Q ss_pred CCCeeEEEEeCCCC----hh---HHHHHHHh--cC-EEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCc
Q 046721 117 GKKRRLQFVECPND----IN---GMIDCAKF--AD-LALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTD 185 (1068)
Q Consensus 117 ~~k~rl~fIDtPGd----l~---smld~akv--AD-lVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~ 185 (1068)
..+..+++|||+|. .. .+...+.. .+ -++||+||+.+... ..++++.....|+.. +++||+|....
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~-~~~~~~~~~~~~~~~--~I~TKlDet~~ 327 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD-VKEIFHQFSPFSYKT--VIFTKLDETTC 327 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHH-HHHHHHHhcCCCCCE--EEEEeccCCCc
Confidence 13568999999992 21 22222222 23 68999999876432 225555555456654 58999998753
No 349
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.43 E-value=0.0014 Score=77.96 Aligned_cols=128 Identities=19% Similarity=0.138 Sum_probs=71.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcccc----------C--CCCc----------eeccEEEEe---------------
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTK----------L--KVPE----------VRGPVTVVS--------------- 116 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~----------~--~~~t----------t~~~Iti~~--------------- 116 (1068)
.+|.+|+++|++|+||||++..|...... . .+.. ..-++....
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 46899999999999999988887653210 0 0000 000111110
Q ss_pred CCCeeEEEEeCCCChh---H------HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHH
Q 046721 117 GKKRRLQFVECPNDIN---G------MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKK 187 (1068)
Q Consensus 117 ~~k~rl~fIDtPGdl~---s------mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k 187 (1068)
.....+++|||||.+. . .+..+-.+|.+|||+|++.+. .....+..+. ..++-.-+|+||+|.....-
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~av~~a~~F~-~~l~i~gvIlTKlD~~a~~G 249 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--QAKNQAKAFH-EAVGIGGIIITKLDGTAKGG 249 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--HHHHHHHHHH-hcCCCCEEEEecccCCCccc
Confidence 0134789999999432 1 223344689999999998763 2223333322 12332346899999864322
Q ss_pred HHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 188 KLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 188 ~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
.+-.+... .+.+|.+++
T Consensus 250 ~~ls~~~~----------~~~Pi~fig 266 (437)
T PRK00771 250 GALSAVAE----------TGAPIKFIG 266 (437)
T ss_pred HHHHHHHH----------HCcCEEEEe
Confidence 22222211 267788877
No 350
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.00066 Score=67.67 Aligned_cols=107 Identities=13% Similarity=0.147 Sum_probs=76.4
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCC--ChhHHHH-HHHhcCEEEEEEeCCCC
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPN--DINGMID-CAKFADLALLLIDASHG 153 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPG--dl~smld-~akvADlVLlVIDas~g 153 (1068)
..|..+|+.++||||++-.|.-......++|+.-.|..++.++..+.++|..| .+..... .....-.+|||+|++..
T Consensus 18 ~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~ 97 (180)
T KOG0071|consen 18 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADR 97 (180)
T ss_pred ceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccch
Confidence 46788999999999999888776544455555444545667788999999988 4666554 45778899999998754
Q ss_pred --CchhHHHHHHHHHhC---CCCcEEEEEeCCCcCC
Q 046721 154 --FEMETFEFLNLMQNH---GLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 154 --~e~~t~eiL~~L~~~---GlP~vIvVLNKiDlvk 184 (1068)
+++.-.++-+++... .++ +++..||-|+..
T Consensus 98 dr~eeAr~ELh~ii~~~em~~~~-~LvlANkQDlp~ 132 (180)
T KOG0071|consen 98 DRIEEARNELHRIINDREMRDAI-ILILANKQDLPD 132 (180)
T ss_pred hhHHHHHHHHHHHhCCHhhhcce-EEEEecCccccc
Confidence 333334666666543 344 677789999864
No 351
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.41 E-value=0.0018 Score=66.57 Aligned_cols=105 Identities=19% Similarity=0.174 Sum_probs=67.3
Q ss_pred EEEEC-CCCCChhHHHHHHHhccccC---------CCC--ce--------eccEEEEeCCCeeEEEEeCCCChhH-HHHH
Q 046721 79 VVVQG-PPQVGKSLLIKCLIKHYTKL---------KVP--EV--------RGPVTVVSGKKRRLQFVECPNDING-MIDC 137 (1068)
Q Consensus 79 VaVVG-~pnvGKSTLIn~L~~~~~~~---------~~~--tt--------~~~Iti~~~~k~rl~fIDtPGdl~s-mld~ 137 (1068)
|+|++ ..|+||||+.-.|....... .++ .. ....++...-...+++||||+.+.. +..+
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~~~~~~ 81 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIERGFITA 81 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcHHHHHH
Confidence 56665 58999999887776542110 000 00 0000110001127999999886554 6667
Q ss_pred HHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcC
Q 046721 138 AKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKF 183 (1068)
Q Consensus 138 akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlv 183 (1068)
+..||.+|++++++..--.....++..+...+.+...+|+|+++.-
T Consensus 82 l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 82 IAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred HHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 7899999999998754444555677777777777778899999864
No 352
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.0013 Score=77.48 Aligned_cols=127 Identities=18% Similarity=0.179 Sum_probs=73.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccc-c--C-----CCCc-------------eec--cEEEE----------eCCCee
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYT-K--L-----KVPE-------------VRG--PVTVV----------SGKKRR 121 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~-~--~-----~~~t-------------t~~--~Iti~----------~~~k~r 121 (1068)
.+.+|+|+|++|+||||++..|...+. . . ...+ ... ++... ...+..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 467899999999999999988875321 0 0 0000 000 11111 012558
Q ss_pred EEEEeCCCCh----h---HHHHHHHh-----cCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHH
Q 046721 122 LQFVECPNDI----N---GMIDCAKF-----ADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKL 189 (1068)
Q Consensus 122 l~fIDtPGdl----~---smld~akv-----ADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l 189 (1068)
++||||||.. . .+...+.. ..-++||+||+.+.. ....++......|+.. +|+||+|.....-.+
T Consensus 302 ~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~f~~~~~~g--lIlTKLDEt~~~G~i 378 (432)
T PRK12724 302 LILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKAYESLNYRR--ILLTKLDEADFLGSF 378 (432)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHHhcCCCCCE--EEEEcccCCCCccHH
Confidence 8999999932 1 22222222 236899999987653 2234555555567764 489999987533222
Q ss_pred HHHHHHHHHHhcccccCCCeEEEEe
Q 046721 190 RKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 190 ~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
-.+... .+.+|.|++
T Consensus 379 l~i~~~----------~~lPI~ylt 393 (432)
T PRK12724 379 LELADT----------YSKSFTYLS 393 (432)
T ss_pred HHHHHH----------HCCCEEEEe
Confidence 222211 266777777
No 353
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=97.39 E-value=0.0016 Score=65.47 Aligned_cols=132 Identities=17% Similarity=0.230 Sum_probs=78.1
Q ss_pred EEEECCCCCChhHHHHHHHhccccCCCCceecc-EEE----EeCCCeeEEEEeCCC--ChhHHHHH-HHhcCEEEEEEeC
Q 046721 79 VVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGP-VTV----VSGKKRRLQFVECPN--DINGMIDC-AKFADLALLLIDA 150 (1068)
Q Consensus 79 VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~-Iti----~~~~k~rl~fIDtPG--dl~smld~-akvADlVLlVIDa 150 (1068)
.+|||-|++|||+|+-.+....-+....+|.|. ..| +.+..-.++++||.| .|..|++. ......|++|.|.
T Consensus 11 llIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDV 90 (198)
T KOG0079|consen 11 LLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDV 90 (198)
T ss_pred HHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEEC
Confidence 468999999999998777765322222222221 112 124567889999999 46666665 4788999999999
Q ss_pred CCCCchhH-HHHHHHHHhC--CCCcEEEEEeCCCcCCcHHHH-HHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 151 SHGFEMET-FEFLNLMQNH--GLPNVMGVLTHLDKFTDKKKL-RKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 151 s~g~e~~t-~eiL~~L~~~--GlP~vIvVLNKiDlvk~~k~l-~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
+.+-.-.. ...|..++.+ .+|. |+|-||.|......-. .+..... ..-+..+|..||+.+
T Consensus 91 Tn~ESF~Nv~rWLeei~~ncdsv~~-vLVGNK~d~~~RrvV~t~dAr~~A-------~~mgie~FETSaKe~ 154 (198)
T KOG0079|consen 91 TNGESFNNVKRWLEEIRNNCDSVPK-VLVGNKNDDPERRVVDTEDARAFA-------LQMGIELFETSAKEN 154 (198)
T ss_pred cchhhhHhHHHHHHHHHhcCccccc-eecccCCCCccceeeehHHHHHHH-------HhcCchheehhhhhc
Confidence 85421111 1233333332 4665 6799999987421100 1111111 113677899998743
No 354
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.38 E-value=0.00079 Score=75.43 Aligned_cols=93 Identities=13% Similarity=0.164 Sum_probs=61.9
Q ss_pred CCChhH----HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccc
Q 046721 128 PNDING----MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTE 203 (1068)
Q Consensus 128 PGdl~s----mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e 203 (1068)
||.+.. +...++.||+||+|+||..++......++..+ .+.| +|+|+||+|++.. .......+.++.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp-~IiVlNK~DL~~~-~~~~~~~~~~~~----- 75 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKP-RLIVLNKADLADP-AVTKQWLKYFEE----- 75 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCC-EEEEEEccccCCH-HHHHHHHHHHHH-----
Confidence 675554 56677999999999999887776666666665 3566 7999999999753 222222222211
Q ss_pred ccCCCeEEEEecccCCcCCchhhcchHHHHHHh
Q 046721 204 LYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 204 ~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~ 236 (1068)
.+.+++++||..+ .++..|...|...
T Consensus 76 --~~~~vi~iSa~~~-----~gi~~L~~~i~~~ 101 (276)
T TIGR03596 76 --KGIKALAINAKKG-----KGVKKIIKAAKKL 101 (276)
T ss_pred --cCCeEEEEECCCc-----ccHHHHHHHHHHH
Confidence 1357899999854 4556666555443
No 355
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.36 E-value=0.00038 Score=72.17 Aligned_cols=54 Identities=24% Similarity=0.220 Sum_probs=38.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEEEEeCCCeeEEEEeCCCC
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVTVVSGKKRRLQFVECPND 130 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd 130 (1068)
.+..|+++|.+|+|||||+|+|++.. ++..+.+|.....+... ..+.++||||-
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~--~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS--PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec--CCEEEEECCCC
Confidence 34689999999999999999999853 23334444432222222 57899999993
No 356
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.34 E-value=0.0015 Score=62.61 Aligned_cols=98 Identities=17% Similarity=0.140 Sum_probs=67.2
Q ss_pred EEEEECC-CCCChhHHHHHHHhccccCCCCceeccEEEEeC---CCeeEEEEeCCCChhH-HHHHHHhcCEEEEEEeCCC
Q 046721 78 VVVVQGP-PQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSG---KKRRLQFVECPNDING-MIDCAKFADLALLLIDASH 152 (1068)
Q Consensus 78 ~VaVVG~-pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~---~k~rl~fIDtPGdl~s-mld~akvADlVLlVIDas~ 152 (1068)
+|+|+|. .|+||||+.-.|........ ...+.++.. ....++++|||+.+.. ....+..||.+|++++++.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~la~~~~~~~----~~~~~l~d~d~~~~~D~IIiDtpp~~~~~~~~~l~~aD~vlvvv~~~~ 76 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEA----GRRVLLVDLDLQFGDDYVVVDLGRSLDEVSLAALDQADRVFLVTQQDL 76 (106)
T ss_pred CEEEECCCCCCcHHHHHHHHHHHHHhcC----CCcEEEEECCCCCCCCEEEEeCCCCcCHHHHHHHHHcCeEEEEecCCh
Confidence 3678776 89999998888877654321 011222221 1338999999876554 5667889999999998875
Q ss_pred CCchhHHHHHHHHHhCCCC---cEEEEEeC
Q 046721 153 GFEMETFEFLNLMQNHGLP---NVMGVLTH 179 (1068)
Q Consensus 153 g~e~~t~eiL~~L~~~GlP---~vIvVLNK 179 (1068)
.--.....++..+...+.+ ++.+|+|+
T Consensus 77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4444555778887777765 67788875
No 357
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.0034 Score=73.02 Aligned_cols=128 Identities=11% Similarity=0.085 Sum_probs=70.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc----------cCC--CCc---------eec-cEEEEeC--------------
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT----------KLK--VPE---------VRG-PVTVVSG-------------- 117 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~----------~~~--~~t---------t~~-~Iti~~~-------------- 117 (1068)
.++.+|+++|++|+||||++..|..... ..+ ... ..+ ++.+...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 4578999999999999999988875320 000 000 001 2221111
Q ss_pred CCeeEEEEeCCCChh---HHHH----HH--HhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHH
Q 046721 118 KKRRLQFVECPNDIN---GMID----CA--KFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKK 188 (1068)
Q Consensus 118 ~k~rl~fIDtPGdl~---smld----~a--kvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~ 188 (1068)
....++||||||... ..++ .. -..|.++||+++..... +...++......++. -+|+||+|....--.
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~-d~~~i~~~f~~l~i~--glI~TKLDET~~~G~ 360 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSA-DVMTILPKLAEIPID--GFIITKMDETTRIGD 360 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHH-HHHHHHHhcCcCCCC--EEEEEcccCCCCccH
Confidence 235899999999421 1111 11 13478888888743221 222344444444555 457999998753222
Q ss_pred HHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 189 LRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 189 l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
+-.+... .+.+|.+++
T Consensus 361 ~Lsv~~~----------tglPIsylt 376 (407)
T PRK12726 361 LYTVMQE----------TNLPVLYMT 376 (407)
T ss_pred HHHHHHH----------HCCCEEEEe
Confidence 2222211 267888877
No 358
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.0013 Score=77.83 Aligned_cols=127 Identities=18% Similarity=0.144 Sum_probs=72.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcccc----CC-----CCcee-------------ccEEEE--e-----------CCC
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTK----LK-----VPEVR-------------GPVTVV--S-----------GKK 119 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~----~~-----~~tt~-------------~~Iti~--~-----------~~k 119 (1068)
.+.+|++||++|+||||++..|.+.+.. .. ..+.+ -++.+. . ...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 4579999999999999999988764210 00 00000 001110 0 124
Q ss_pred eeEEEEeCCCCh------hHHHHHH---HhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHH
Q 046721 120 RRLQFVECPNDI------NGMIDCA---KFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLR 190 (1068)
Q Consensus 120 ~rl~fIDtPGdl------~smld~a---kvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~ 190 (1068)
..+++|||+|-. ...+..+ ....-++||+|++.+.. .-.+++......++.. +++||+|.....-.+-
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~-~~~~~~~~f~~~~~~~--~I~TKlDEt~~~G~~l 346 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGD-TLDEVISAYQGHGIHG--CIITKVDEAASLGIAL 346 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHH-HHHHHHHHhcCCCCCE--EEEEeeeCCCCccHHH
Confidence 578999999921 1222222 22456889999985443 2234555555566664 5899999875332222
Q ss_pred HHHHHHHHHhcccccCCCeEEEEe
Q 046721 191 KTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 191 ~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
.+.. . .+.+|.|++
T Consensus 347 ~~~~---~-------~~lPi~yvt 360 (420)
T PRK14721 347 DAVI---R-------RKLVLHYVT 360 (420)
T ss_pred HHHH---H-------hCCCEEEEE
Confidence 2221 1 267788887
No 359
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.32 E-value=0.0074 Score=61.21 Aligned_cols=134 Identities=17% Similarity=0.239 Sum_probs=81.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEEEE---eC--CCeeEEEEeCCCChh---H-HHHHHHhcC
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVTVV---SG--KKRRLQFVECPNDIN---G-MIDCAKFAD 142 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~Iti~---~~--~k~rl~fIDtPGdl~---s-mld~akvAD 142 (1068)
|....|+|+|.-++|||.++..|+-.. +......|...|.+. +. -...+.|.||.|--+ . --.+...+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 456789999999999999998887542 111122222223322 22 256788999998322 1 233568899
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHh--------CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 143 LALLLIDASHGFEMETFEFLNLMQN--------HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 143 lVLlVIDas~g~e~~t~eiL~~L~~--------~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
.-+||.|... .+.+..+.+|+. .-+| ++++.|+.|+..+...-.++.+...++ .-.+++.++
T Consensus 87 afVLVYs~~d---~eSf~rv~llKk~Idk~KdKKEvp-iVVLaN~rdr~~p~~vd~d~A~~Wa~r------Ekvkl~eVt 156 (198)
T KOG3883|consen 87 AFVLVYSPMD---PESFQRVELLKKEIDKHKDKKEVP-IVVLANKRDRAEPREVDMDVAQIWAKR------EKVKLWEVT 156 (198)
T ss_pred eEEEEecCCC---HHHHHHHHHHHHHHhhcccccccc-EEEEechhhcccchhcCHHHHHHHHhh------hheeEEEEE
Confidence 9999998753 344544444432 2356 788899999975432222222221111 356889999
Q ss_pred ccc
Q 046721 215 GLI 217 (1068)
Q Consensus 215 Al~ 217 (1068)
|+.
T Consensus 157 a~d 159 (198)
T KOG3883|consen 157 AMD 159 (198)
T ss_pred ecc
Confidence 864
No 360
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.28 E-value=0.00065 Score=76.58 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=56.3
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhcccc--CCCCceecc----EEEEe----------CC----CeeEEEEeCCC--
Q 046721 72 GEPPPYVVVVQGPPQVGKSLLIKCLIKHYTK--LKVPEVRGP----VTVVS----------GK----KRRLQFVECPN-- 129 (1068)
Q Consensus 72 ~~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~--~~~~tt~~~----Iti~~----------~~----k~rl~fIDtPG-- 129 (1068)
+.+....++|||.||+|||||+|+|+.+... ..+.+|-.| +.+.. +. ...++++|..|
T Consensus 16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv 95 (391)
T KOG1491|consen 16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV 95 (391)
T ss_pred CCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence 3444568999999999999999999987422 223333222 22211 01 34689999876
Q ss_pred -------Ch-hHHHHHHHhcCEEEEEEeCCC
Q 046721 130 -------DI-NGMIDCAKFADLALLLIDASH 152 (1068)
Q Consensus 130 -------dl-~smld~akvADlVLlVIDas~ 152 (1068)
-| +..|+.++.+|.++.||++..
T Consensus 96 kGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 96 KGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 13 359999999999999999864
No 361
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=97.27 E-value=0.0029 Score=64.63 Aligned_cols=136 Identities=18% Similarity=0.197 Sum_probs=81.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc-ccCCCCc-----eeccEEEEeCCCeeEEEEeCCC--ChhH-HHHHHHhcCEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPE-----VRGPVTVVSGKKRRLQFVECPN--DING-MIDCAKFADLALLL 147 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~t-----t~~~Iti~~~~k~rl~fIDtPG--dl~s-mld~akvADlVLlV 147 (1068)
....|||-+-+|||+|+..++... ....-+| ....|.+..+...+++++||.| .|.+ +-...+.+=.+|+|
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllv 88 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLV 88 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEE
Confidence 356789999999999999988642 1111011 0111223344567899999999 5777 44567889999999
Q ss_pred EeCCC--CCchhHHHHHHHHHhCCCC---cEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 148 IDASH--GFEMETFEFLNLMQNHGLP---NVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 148 IDas~--g~e~~t~eiL~~L~~~GlP---~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
.|.+. .|+.-...+..+....+-| -..+|-.|+|+.....--.+-.+.+... -+..++..||++|
T Consensus 89 yditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~------hgM~FVETSak~g 158 (213)
T KOG0091|consen 89 YDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAAS------HGMAFVETSAKNG 158 (213)
T ss_pred EeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHh------cCceEEEecccCC
Confidence 99874 2333222333333333323 3455679999975321111112222222 3778899999865
No 362
>PRK13796 GTPase YqeH; Provisional
Probab=97.27 E-value=0.00034 Score=81.55 Aligned_cols=54 Identities=26% Similarity=0.207 Sum_probs=39.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc--------ccCCCCceeccEEEEeCCCeeEEEEeCCCCh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY--------TKLKVPEVRGPVTVVSGKKRRLQFVECPNDI 131 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~--------~~~~~~tt~~~Iti~~~~k~rl~fIDtPGdl 131 (1068)
...|.|||.+|||||||||+|++.. ++..+.||.+.+.+.... ...++||||-+
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~--~~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD--GSFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC--CcEEEECCCcc
Confidence 3579999999999999999998642 345566666655544332 35799999943
No 363
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.002 Score=64.99 Aligned_cols=107 Identities=22% Similarity=0.241 Sum_probs=67.8
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc-ccCCCCce----eccEEEEeCCCeeEEEEeCCC--ChhH-HHHHHHhcCEEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEV----RGPVTVVSGKKRRLQFVECPN--DING-MIDCAKFADLALLLI 148 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt----~~~Iti~~~~k~rl~fIDtPG--dl~s-mld~akvADlVLlVI 148 (1068)
+.+.|+|+.|.|||.|+..++... ..+..+|. ...|.-+-++..+++++||.| .|.+ +....+.|-.+|||.
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVY 89 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 89 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEE
Confidence 467899999999999999988763 22222221 111222334577899999999 5777 455678899999999
Q ss_pred eCCCC--CchhHHHHHHHHHhCCCCc--EEEEEeCCCcCC
Q 046721 149 DASHG--FEMETFEFLNLMQNHGLPN--VMGVLTHLDKFT 184 (1068)
Q Consensus 149 Das~g--~e~~t~eiL~~L~~~GlP~--vIvVLNKiDlvk 184 (1068)
|++.. +...+ ..|+-++..--|+ +|++-||-|+-.
T Consensus 90 D~TsrdsfnaLt-nWL~DaR~lAs~nIvviL~GnKkDL~~ 128 (214)
T KOG0086|consen 90 DITSRDSFNALT-NWLTDARTLASPNIVVILCGNKKDLDP 128 (214)
T ss_pred eccchhhHHHHH-HHHHHHHhhCCCcEEEEEeCChhhcCh
Confidence 99742 22111 1233333333343 555669999864
No 364
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.26 E-value=0.006 Score=63.39 Aligned_cols=66 Identities=23% Similarity=0.274 Sum_probs=50.7
Q ss_pred CCeeEEEEeCCCChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC
Q 046721 118 KKRRLQFVECPNDING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 118 ~k~rl~fIDtPGdl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk 184 (1068)
....++|+|||+.+.. ++.++..||.+|+++.++..--.....++..+...+.| +.+|+|++|...
T Consensus 91 ~~~d~viiDtpp~~~~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~-~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIGCPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIP-VGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCcHHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCC-EEEEEeCCCCCc
Confidence 4568999999865543 66777899999999998754333445777888888888 688999998753
No 365
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.26 E-value=0.0019 Score=65.87 Aligned_cols=58 Identities=14% Similarity=0.077 Sum_probs=38.2
Q ss_pred CeeEEEEeCCCChhHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCC
Q 046721 119 KRRLQFVECPNDINGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLD 181 (1068)
Q Consensus 119 k~rl~fIDtPGdl~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiD 181 (1068)
...++||||+|......+.+..||.+|+|+..+. .....++....-.-. =++|+||+|
T Consensus 91 ~~D~iiIDtaG~~~~~~~~~~~Ad~~ivv~tpe~---~D~y~~~k~~~~~~~--~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSEVDIASMADTTVVVMAPGA---GDDIQAIKAGIMEIA--DIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhhhhHHHhCCEEEEEECCCc---hhHHHHhhhhHhhhc--CEEEEeCCC
Confidence 4578999999976677788999999999997751 122222222111111 367999987
No 366
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.19 E-value=0.0013 Score=74.09 Aligned_cols=92 Identities=13% Similarity=0.189 Sum_probs=61.2
Q ss_pred CCChhH----HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccc
Q 046721 128 PNDING----MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTE 203 (1068)
Q Consensus 128 PGdl~s----mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e 203 (1068)
||.+.. +...++.||+||+|+|+..++......+...+. +.| +|+|+||+|+... .......+.+. .
T Consensus 8 pgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp-~iiVlNK~DL~~~-~~~~~~~~~~~----~- 78 (287)
T PRK09563 8 PGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKP-RLLILNKSDLADP-EVTKKWIEYFE----E- 78 (287)
T ss_pred HHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCC-EEEEEEchhcCCH-HHHHHHHHHHH----H-
Confidence 675553 667789999999999998887766666666553 667 7899999999753 22322222221 1
Q ss_pred ccCCCeEEEEecccCCcCCchhhcchHHHHHH
Q 046721 204 LYHGAKLFKLSGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 204 ~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
.+..++++||.++ .++..|...|..
T Consensus 79 --~~~~vi~vSa~~~-----~gi~~L~~~l~~ 103 (287)
T PRK09563 79 --QGIKALAINAKKG-----QGVKKILKAAKK 103 (287)
T ss_pred --cCCeEEEEECCCc-----ccHHHHHHHHHH
Confidence 1457899999854 455556555543
No 367
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.18 E-value=0.0034 Score=63.08 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=63.7
Q ss_pred EEEE-CCCCCChhHHHHHHHhccccCCCCceeccEEEEe------CCCeeEEEEeCCCChhH-HHHHHHhcCEEEEEEeC
Q 046721 79 VVVQ-GPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVS------GKKRRLQFVECPNDING-MIDCAKFADLALLLIDA 150 (1068)
Q Consensus 79 VaVV-G~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~------~~k~rl~fIDtPGdl~s-mld~akvADlVLlVIDa 150 (1068)
|++. +..|+||||+.-.|......... .+.++. .-...++++|||+.+.. .+..+..||.+|+|+++
T Consensus 2 i~~~~~kgg~gkt~~~~~~a~~~~~~~~-----~~~~vd~D~~~~~~~yd~VIiD~p~~~~~~~~~~l~~aD~vviv~~~ 76 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKLGK-----RVLLLDADLGLANLDYDYIIIDTGAGISDNVLDFFLAADEVIVVTTP 76 (139)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCC-----cEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCeEEEEcCC
Confidence 4555 45899999987776665432110 111111 01368999999876654 56788999999999998
Q ss_pred CCCCchhHHHHHHHHHh-CCCCcEEEEEeCCCc
Q 046721 151 SHGFEMETFEFLNLMQN-HGLPNVMGVLTHLDK 182 (1068)
Q Consensus 151 s~g~e~~t~eiL~~L~~-~GlP~vIvVLNKiDl 182 (1068)
+..--..+..+++.+.. .+.+++.+|+|+++.
T Consensus 77 ~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 77 EPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred ChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 64332334556666543 344567899999864
No 368
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.17 E-value=0.0004 Score=71.81 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
..+++++|++|||||||||+|++.
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 378999999999999999999997
No 369
>PRK12289 GTPase RsgA; Reviewed
Probab=97.16 E-value=0.00047 Score=79.83 Aligned_cols=51 Identities=27% Similarity=0.298 Sum_probs=33.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc---ccCCC-------CceeccEEEEeCCCeeEEEEeCCC
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY---TKLKV-------PEVRGPVTVVSGKKRRLQFVECPN 129 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~-------~tt~~~Iti~~~~k~rl~fIDtPG 129 (1068)
.+++|+|+||||||||||+|++.. +.... +||+.. .++.... ...+|||||
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~-~l~~l~~-g~~liDTPG 233 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHV-ELFELPN-GGLLADTPG 233 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCcee-EEEECCC-CcEEEeCCC
Confidence 468999999999999999999863 22211 133332 2332221 237899999
No 370
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.16 E-value=0.0031 Score=74.96 Aligned_cols=126 Identities=20% Similarity=0.209 Sum_probs=70.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc--c--CC-----CCcee---------------ccEEEEe-----------CCCe
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT--K--LK-----VPEVR---------------GPVTVVS-----------GKKR 120 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~--~--~~-----~~tt~---------------~~Iti~~-----------~~k~ 120 (1068)
..+|+++|++|+||||++..|...+. . .. ..+.+ -++.... ....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 46899999999999998877765432 0 00 00000 0111111 1245
Q ss_pred eEEEEeCCCC----hh---HHHHHHH---hcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHH
Q 046721 121 RLQFVECPND----IN---GMIDCAK---FADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLR 190 (1068)
Q Consensus 121 rl~fIDtPGd----l~---smld~ak---vADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~ 190 (1068)
.++||||||. .. .+...+. .-+-++||++++.+.. ....++..+...++- =+++||+|......
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~-~l~~~~~~f~~~~~~--~vI~TKlDet~~~G--- 374 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE-DLKDIYKHFSRLPLD--GLIFTKLDETSSLG--- 374 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH-HHHHHHHHhCCCCCC--EEEEeccccccccc---
Confidence 8999999992 11 1222222 2346788999875432 223455555555654 35899999865322
Q ss_pred HHHHHHHHHhcccccCCCeEEEEe
Q 046721 191 KTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 191 ~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
.+...+.. .+.+|.|++
T Consensus 375 ~i~~~~~~-------~~lPv~yit 391 (424)
T PRK05703 375 SILSLLIE-------SGLPISYLT 391 (424)
T ss_pred HHHHHHHH-------HCCCEEEEe
Confidence 22222221 267888887
No 371
>PRK10867 signal recognition particle protein; Provisional
Probab=97.13 E-value=0.0045 Score=73.59 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=21.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHh
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIK 98 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~ 98 (1068)
.++|.+|.++|++|+||||++..|..
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHH
Confidence 45689999999999999996666654
No 372
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.11 E-value=0.0015 Score=68.66 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=56.6
Q ss_pred hhHHHH-HHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHh-cccccCCC
Q 046721 131 INGMID-CAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRF-GTELYHGA 208 (1068)
Q Consensus 131 l~smld-~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~-~~e~~~~~ 208 (1068)
+.+++. ....||+||+|+|++.........+. ....+.| +|+|+||+|+.............++... ........
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~--~~~~~~~-~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLR--LFGGNNP-VILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPK 100 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHH--HhcCCCc-EEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcc
Confidence 355444 45889999999999875443333432 2234666 7899999999753221111111110000 11112234
Q ss_pred eEEEEecccCCcCCchhhcchHHHHHHhh
Q 046721 209 KLFKLSGLIQGKYTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 209 kVf~ISAl~g~~y~~~ei~nLlR~I~~~k 237 (1068)
.+|++||+++ .++..|...|....
T Consensus 101 ~i~~vSA~~~-----~gi~eL~~~l~~~l 124 (190)
T cd01855 101 DVILISAKKG-----WGVEELINAIKKLA 124 (190)
T ss_pred cEEEEECCCC-----CCHHHHHHHHHHHh
Confidence 6899999965 55666776665543
No 373
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.08 E-value=0.009 Score=66.94 Aligned_cols=127 Identities=15% Similarity=0.206 Sum_probs=73.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcccc---------C-CC--------Cce--eccEEEEe--C--------------C
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTK---------L-KV--------PEV--RGPVTVVS--G--------------K 118 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~---------~-~~--------~tt--~~~Iti~~--~--------------~ 118 (1068)
++..|+++|++++||||++..|...... . .. .+. ...+.+.. . .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 4579999999999999999888764210 0 00 000 01112111 0 1
Q ss_pred CeeEEEEeCCCCh-------hHHHHHH--HhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHH
Q 046721 119 KRRLQFVECPNDI-------NGMIDCA--KFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKL 189 (1068)
Q Consensus 119 k~rl~fIDtPGdl-------~smld~a--kvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l 189 (1068)
+..++||||||.. ..+...+ -..|.++||+||+.... +...++......++.. +++||+|.....-.+
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~-d~~~~~~~f~~~~~~~--~I~TKlDet~~~G~~ 230 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIHIDG--IVFTKFDETASSGEL 230 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH-HHHHHHHHhCCCCCCE--EEEEeecCCCCccHH
Confidence 4589999999943 1222222 23577899999975332 2334555555556654 589999987532222
Q ss_pred HHHHHHHHHHhcccccCCCeEEEEe
Q 046721 190 RKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 190 ~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
-.+... .+.+|.+++
T Consensus 231 l~~~~~----------~~~Pi~~it 245 (270)
T PRK06731 231 LKIPAV----------SSAPIVLMT 245 (270)
T ss_pred HHHHHH----------HCcCEEEEe
Confidence 222111 267888877
No 374
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.05 E-value=0.0041 Score=78.02 Aligned_cols=127 Identities=20% Similarity=0.210 Sum_probs=71.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcccc---C-C-----CCcee--------------c-cEEEEe-----------CCC
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTK---L-K-----VPEVR--------------G-PVTVVS-----------GKK 119 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~---~-~-----~~tt~--------------~-~Iti~~-----------~~k 119 (1068)
.+.+|++||++|+||||++..|.+.+.. . . ..+.+ + ++.+.. ..+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 4679999999999999999999875310 0 0 00100 0 111110 124
Q ss_pred eeEEEEeCCCChh---HHHHHH------HhcCEEEEEEeCCCCCchhHHHHHHHHHhC---CCCcEEEEEeCCCcCCcHH
Q 046721 120 RRLQFVECPNDIN---GMIDCA------KFADLALLLIDASHGFEMETFEFLNLMQNH---GLPNVMGVLTHLDKFTDKK 187 (1068)
Q Consensus 120 ~rl~fIDtPGdl~---smld~a------kvADlVLlVIDas~g~e~~t~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k 187 (1068)
..++||||||... .+.+.+ ...+-++||+|++.+.+ .-.+++...... ++.. +|+||+|.....-
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~-~l~~i~~~f~~~~~~~i~g--lIlTKLDEt~~~G 340 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGD-TLNEVVHAYRHGAGEDVDG--CIITKLDEATHLG 340 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHH-HHHHHHHHHhhcccCCCCE--EEEeccCCCCCcc
Confidence 5799999999211 122221 23467899999985432 112344444322 4443 5799999875332
Q ss_pred HHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 188 KLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 188 ~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
.+-.+... .+.+|.|++
T Consensus 341 ~iL~i~~~----------~~lPI~yit 357 (767)
T PRK14723 341 PALDTVIR----------HRLPVHYVS 357 (767)
T ss_pred HHHHHHHH----------HCCCeEEEe
Confidence 22222211 267888887
No 375
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.03 E-value=0.01 Score=69.32 Aligned_cols=146 Identities=16% Similarity=0.288 Sum_probs=89.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc----------------------cCCCCcee------ccEEEEe--CCCeeEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT----------------------KLKVPEVR------GPVTVVS--GKKRRLQFV 125 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~----------------------~~~~~tt~------~~Iti~~--~~k~rl~fI 125 (1068)
-+-|+||||.-+||||+|+++....+ +.++.||. ..+.+.. +-+.++.+|
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 37899999999999999999976311 11111211 1122222 236789999
Q ss_pred eCCC-----C----------------hh---HHHHHH-----Hh----cC-EEEEEEeCCCC-Cc-----hhHHHHHHHH
Q 046721 126 ECPN-----D----------------IN---GMIDCA-----KF----AD-LALLLIDASHG-FE-----METFEFLNLM 165 (1068)
Q Consensus 126 DtPG-----d----------------l~---smld~a-----kv----AD-lVLlVIDas~g-~e-----~~t~eiL~~L 165 (1068)
||-| . +. ..-.+| |+ |- .+++--|+|.+ +. .....+++.|
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 9987 1 11 022233 11 22 34444566532 22 2334689999
Q ss_pred HhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchHHHH
Q 046721 166 QNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFI 233 (1068)
Q Consensus 166 ~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I 233 (1068)
++.|.| .|++||=.+-.. ..-..+...|.... +.+|+++++..= ...++..+++-+
T Consensus 177 k~igKP-FvillNs~~P~s--~et~~L~~eL~ekY------~vpVlpvnc~~l---~~~DI~~Il~~v 232 (492)
T PF09547_consen 177 KEIGKP-FVILLNSTKPYS--EETQELAEELEEKY------DVPVLPVNCEQL---REEDITRILEEV 232 (492)
T ss_pred HHhCCC-EEEEEeCCCCCC--HHHHHHHHHHHHHh------CCcEEEeehHHc---CHHHHHHHHHHH
Confidence 999999 788999776443 33455666666664 889999998643 667777777444
No 376
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.03 E-value=0.0014 Score=67.41 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.9
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
++.|+|+.|+|||||++.|+..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 6789999999999999999875
No 377
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.02 E-value=0.0081 Score=72.23 Aligned_cols=127 Identities=19% Similarity=0.135 Sum_probs=70.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccC----CC-----Cce-------------eccEEEE--e-----------CCC
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKL----KV-----PEV-------------RGPVTVV--S-----------GKK 119 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~----~~-----~tt-------------~~~Iti~--~-----------~~k 119 (1068)
.+.+|++||++||||||++..|.+.+... .+ .+. ...+.+. . ..+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d 334 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRN 334 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccC
Confidence 35799999999999999999998753110 00 000 0001110 0 023
Q ss_pred eeEEEEeCCCChh---HHHHHH-HhcC-----EEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHH
Q 046721 120 RRLQFVECPNDIN---GMIDCA-KFAD-----LALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLR 190 (1068)
Q Consensus 120 ~rl~fIDtPGdl~---smld~a-kvAD-----lVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~ 190 (1068)
..+++|||+|-.. .+.+.+ ..++ -.+||+|++.+.. ...+++......++. -+|+||+|.....-.+-
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~-~l~~i~~~f~~~~~~--g~IlTKlDet~~~G~~l 411 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGD-TLNEVVQAYRGPGLA--GCILTKLDEAASLGGAL 411 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHH-HHHHHHHHhccCCCC--EEEEeCCCCcccchHHH
Confidence 4689999999322 122221 2222 2789999976442 223455555555655 35799999875322222
Q ss_pred HHHHHHHHHhcccccCCCeEEEEe
Q 046721 191 KTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 191 ~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
.+.. . ...+|.|++
T Consensus 412 ~i~~---~-------~~lPI~yvt 425 (484)
T PRK06995 412 DVVI---R-------YKLPLHYVS 425 (484)
T ss_pred HHHH---H-------HCCCeEEEe
Confidence 2221 1 267788887
No 378
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.98 E-value=0.00096 Score=73.57 Aligned_cols=51 Identities=20% Similarity=0.106 Sum_probs=33.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc---cC-------CCCceeccEEEEeCCCeeEEEEeCCC
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT---KL-------KVPEVRGPVTVVSGKKRRLQFVECPN 129 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~---~~-------~~~tt~~~Iti~~~~k~rl~fIDtPG 129 (1068)
..+++++|++|||||||||+|++... .. ..+||+....+.. . ...++||||
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~--~~~liDtPG 180 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-H--GGLIADTPG 180 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-C--CcEEEeCCC
Confidence 35899999999999999999998631 11 1223433222222 2 347899999
No 379
>PRK12288 GTPase RsgA; Reviewed
Probab=96.98 E-value=0.00086 Score=77.61 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+++++|.||||||||||+|++..
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhcccc
Confidence 368999999999999999999863
No 380
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=96.97 E-value=0.00048 Score=67.88 Aligned_cols=131 Identities=17% Similarity=0.225 Sum_probs=75.2
Q ss_pred EECCCCCChhHHHHHHHh-ccccCC-CCc----eeccEEEEeCCCeeEEEEeCCC--ChhH-HHHHHHhcCEEEEEEeCC
Q 046721 81 VQGPPQVGKSLLIKCLIK-HYTKLK-VPE----VRGPVTVVSGKKRRLQFVECPN--DING-MIDCAKFADLALLLIDAS 151 (1068)
Q Consensus 81 VVG~pnvGKSTLIn~L~~-~~~~~~-~~t----t~~~Iti~~~~k~rl~fIDtPG--dl~s-mld~akvADlVLlVIDas 151 (1068)
++|-+++|||.|+-+.-. .+...+ +.| .+..+.-+.+.+.+++++||.| .|.+ +-...+.||.+|||.|..
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 578899999975422211 111111 111 1111111234578999999999 5777 445679999999999987
Q ss_pred CCCchhH-HHHHHHHHhC---CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 152 HGFEMET-FEFLNLMQNH---GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 152 ~g~e~~t-~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
....-+. ...|+.+... .+. ++++-||+|+.....--++--+.|.+.. +.+++..||++|
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~-l~llgnk~d~a~er~v~~ddg~kla~~y------~ipfmetsaktg 145 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVA-LMLLGNKCDLAHERAVKRDDGEKLAEAY------GIPFMETSAKTG 145 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHh-HhhhccccccchhhccccchHHHHHHHH------CCCceecccccc
Confidence 5332111 1233333332 333 7889999999642211111222232222 778899999987
No 381
>PRK12289 GTPase RsgA; Reviewed
Probab=96.96 E-value=0.0032 Score=73.01 Aligned_cols=83 Identities=18% Similarity=0.170 Sum_probs=54.4
Q ss_pred HHHhcCEEEEEEeCCCC-Cchh-HHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 137 CAKFADLALLLIDASHG-FEME-TFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 137 ~akvADlVLlVIDas~g-~e~~-t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
++..+|.||+|+|+..+ +... ...+|..+...|+| +|+|+||+|++.+ ..+....+.+.. .+..+|++|
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip-~ILVlNK~DLv~~-~~~~~~~~~~~~-------~g~~v~~iS 156 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLE-IVLCLNKADLVSP-TEQQQWQDRLQQ-------WGYQPLFIS 156 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC-EEEEEEchhcCCh-HHHHHHHHHHHh-------cCCeEEEEE
Confidence 47889999999999754 2332 23556666678998 7899999999863 223322222211 245799999
Q ss_pred cccCCcCCchhhcchHHHH
Q 046721 215 GLIQGKYTKKDIGNLAEFI 233 (1068)
Q Consensus 215 Al~g~~y~~~ei~nLlR~I 233 (1068)
|+++ .++..|...|
T Consensus 157 A~tg-----~GI~eL~~~L 170 (352)
T PRK12289 157 VETG-----IGLEALLEQL 170 (352)
T ss_pred cCCC-----CCHHHHhhhh
Confidence 9865 4555555555
No 382
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.95 E-value=0.0072 Score=72.97 Aligned_cols=125 Identities=18% Similarity=0.171 Sum_probs=70.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcccc----CCC-----Ccee-------------ccEEEEe-------------CCCe
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTK----LKV-----PEVR-------------GPVTVVS-------------GKKR 120 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~----~~~-----~tt~-------------~~Iti~~-------------~~k~ 120 (1068)
..+|+|+|++|+||||++..|...+.. ..+ .+.+ -.+.+.. ..+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 468999999999999999888764211 000 0000 0111111 1256
Q ss_pred eEEEEeCCCChh---------HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHH
Q 046721 121 RLQFVECPNDIN---------GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRK 191 (1068)
Q Consensus 121 rl~fIDtPGdl~---------smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~ 191 (1068)
.++||||||... ..+..+. ....+|||+++.+.... .+++..+...++ .-+|+||+|....- =.
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~Dl-~eii~~f~~~~~--~gvILTKlDEt~~l---G~ 502 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSDL-DEVVRRFAHAKP--QGVVLTKLDETGRF---GS 502 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhHH-HHHHHHHHhhCC--eEEEEecCcCccch---hH
Confidence 899999999321 1222222 34578888887654322 245555544333 45799999986432 22
Q ss_pred HHHHHHHHhcccccCCCeEEEEe
Q 046721 192 TKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 192 vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
++..+.. .+.+|.|++
T Consensus 503 aLsv~~~-------~~LPI~yvt 518 (559)
T PRK12727 503 ALSVVVD-------HQMPITWVT 518 (559)
T ss_pred HHHHHHH-------hCCCEEEEe
Confidence 2222211 256788887
No 383
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.93 E-value=0.00073 Score=77.06 Aligned_cols=73 Identities=23% Similarity=0.295 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhccCCcccccCCCCCCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEEEEeCCCeeEEE
Q 046721 48 KRSMMRTAEKEQRRLHIPTIDRSYGEPPPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVTVVSGKKRRLQF 124 (1068)
Q Consensus 48 ~r~~rr~~~k~~kr~~v~~~~R~~~~~pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~Iti~~~~k~rl~f 124 (1068)
-+-..-++-+|-.++|. +..-+-|++||+||+|||++||.|.... +...+.+|. +.-...--++|.+
T Consensus 287 GKgalI~llRQf~kLh~--------dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETK--VWQYItLmkrIfL 356 (572)
T KOG2423|consen 287 GKGALIQLLRQFAKLHS--------DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETK--VWQYITLMKRIFL 356 (572)
T ss_pred chhHHHHHHHHHHhhcc--------CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcch--HHHHHHHHhceeE
Confidence 34444555566666553 2234789999999999999999998863 333333332 1100112458999
Q ss_pred EeCCCC
Q 046721 125 VECPND 130 (1068)
Q Consensus 125 IDtPGd 130 (1068)
|||||-
T Consensus 357 IDcPGv 362 (572)
T KOG2423|consen 357 IDCPGV 362 (572)
T ss_pred ecCCCc
Confidence 999993
No 384
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.91 E-value=0.002 Score=65.38 Aligned_cols=54 Identities=24% Similarity=0.295 Sum_probs=36.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc---cCCCCceeccEEEEeCCCeeEEEEeCCC
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT---KLKVPEVRGPVTVVSGKKRRLQFVECPN 129 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~---~~~~~tt~~~Iti~~~~k~rl~fIDtPG 129 (1068)
+.+..|+++|.+|+|||||+|+|.+... ...+.++.. +.... ....+.++||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~-~~~~~-~~~~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKG-EQLVK-ITSKIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeee-eEEEE-cCCCEEEEECcC
Confidence 3467789999999999999999997532 222222221 11111 234789999998
No 385
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.90 E-value=0.0071 Score=70.50 Aligned_cols=107 Identities=21% Similarity=0.320 Sum_probs=65.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccc--cC-------CCCce---------------eccEEEEeC-----------CC
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYT--KL-------KVPEV---------------RGPVTVVSG-----------KK 119 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~--~~-------~~~tt---------------~~~Iti~~~-----------~k 119 (1068)
+.++|++|||+||||||.+-.|...+. .. +..+. .-|+.++.. ..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 378999999999999998888877653 10 01110 013332221 25
Q ss_pred eeEEEEeCCC----Chh------HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCc
Q 046721 120 RRLQFVECPN----DIN------GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTD 185 (1068)
Q Consensus 120 ~rl~fIDtPG----dl~------smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~ 185 (1068)
..++||||.| |.. ..++.. ...-+.||++++... ..-.+++......++.. +++||+|....
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~-~~i~~~Lvlsat~K~-~dlkei~~~f~~~~i~~--~I~TKlDET~s 353 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVS-HSIEVYLVLSATTKY-EDLKEIIKQFSLFPIDG--LIFTKLDETTS 353 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhcc-ccceEEEEEecCcch-HHHHHHHHHhccCCcce--eEEEcccccCc
Confidence 6899999998 211 122222 345677888886422 12235666666667765 46999998753
No 386
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.86 E-value=0.02 Score=59.23 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=38.9
Q ss_pred CeeEEEEeCCCChh---HHHHH------HHhcCEEEEEEeCCCCCchhHHHHHH-HHHhCCCCcEEEEEeCCCcCCc
Q 046721 119 KRRLQFVECPNDIN---GMIDC------AKFADLALLLIDASHGFEMETFEFLN-LMQNHGLPNVMGVLTHLDKFTD 185 (1068)
Q Consensus 119 k~rl~fIDtPGdl~---smld~------akvADlVLlVIDas~g~e~~t~eiL~-~L~~~GlP~vIvVLNKiDlvk~ 185 (1068)
...++++||||... ..+.. +...|.++||+|+..+. ...+.+. .+...++ .-+|+||+|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~--~~~~~~~~~~~~~~~--~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ--DAVNQAKAFNEALGI--TGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh--HHHHHHHHHHhhCCC--CEEEEECCcCCCC
Confidence 44689999999532 22222 23489999999996433 2223333 3344564 3568899998753
No 387
>PRK00098 GTPase RsgA; Reviewed
Probab=96.82 E-value=0.0039 Score=70.76 Aligned_cols=84 Identities=21% Similarity=0.258 Sum_probs=52.9
Q ss_pred HHHhcCEEEEEEeCCCCCc-hh-HHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 137 CAKFADLALLLIDASHGFE-ME-TFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 137 ~akvADlVLlVIDas~g~e-~~-t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
.+..+|++|+|+|++.+.. .. ...+|..+...++| +|+|+||+|+..+........+.++. .+.++|++|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip-~iIVlNK~DL~~~~~~~~~~~~~~~~-------~g~~v~~vS 148 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIK-PIIVLNKIDLLDDLEEARELLALYRA-------IGYDVLELS 148 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC-EEEEEEhHHcCCCHHHHHHHHHHHHH-------CCCeEEEEe
Confidence 3689999999999975422 22 23566667778898 78899999997433322222222211 145899999
Q ss_pred cccCCcCCchhhcchHHHH
Q 046721 215 GLIQGKYTKKDIGNLAEFI 233 (1068)
Q Consensus 215 Al~g~~y~~~ei~nLlR~I 233 (1068)
|+++ .++..|...|
T Consensus 149 A~~g-----~gi~~L~~~l 162 (298)
T PRK00098 149 AKEG-----EGLDELKPLL 162 (298)
T ss_pred CCCC-----ccHHHHHhhc
Confidence 9864 4444444433
No 388
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.79 E-value=0.0032 Score=70.59 Aligned_cols=97 Identities=27% Similarity=0.271 Sum_probs=56.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc--------ccCCCCceeccEE-EEeCCCeeEEEEeCCC----ChhHHHHHHHh
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY--------TKLKVPEVRGPVT-VVSGKKRRLQFVECPN----DINGMIDCAKF 140 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~--------~~~~~~tt~~~It-i~~~~k~rl~fIDtPG----dl~smld~akv 140 (1068)
.+-..|-|||-||+|||||||++.... +++.+..|+..-. +....+..+.++|||| ++....+.++.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lKL 220 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLKL 220 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHHhhhh
Confidence 455789999999999999999997652 2222222221100 1122345688899999 44456666665
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhCCCC
Q 046721 141 ADLALLLIDASHGFEMETFEFLNLMQNHGLP 171 (1068)
Q Consensus 141 ADlVLlVIDas~g~e~~t~eiL~~L~~~GlP 171 (1068)
| ++.+|-|.--+..-..-.+|-+|..++.+
T Consensus 221 A-L~g~Vkd~~V~~~~~adylL~~lN~~~~~ 250 (335)
T KOG2485|consen 221 A-LCGLVKDHLVGEETIADYLLYLLNSHSDF 250 (335)
T ss_pred h-hcccccccccCHHHHHHHHHHHHhccCcc
Confidence 5 34444443322222223566666666543
No 389
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.73 E-value=0.014 Score=69.45 Aligned_cols=107 Identities=22% Similarity=0.254 Sum_probs=59.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc---c--------C--CCC---------c-eeccEEEE-e-------------
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT---K--------L--KVP---------E-VRGPVTVV-S------------- 116 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~---~--------~--~~~---------t-t~~~Iti~-~------------- 116 (1068)
.+|.+|.++|++|+||||++-.|..... . . .+. . ..-++... .
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 5689999999999999997655543210 0 0 000 0 00011100 0
Q ss_pred ---CCCeeEEEEeCCCChh---HHHH------HHHhcCEEEEEEeCCCCCchhHHHHHHHHH-hCCCCcEEEEEeCCCcC
Q 046721 117 ---GKKRRLQFVECPNDIN---GMID------CAKFADLALLLIDASHGFEMETFEFLNLMQ-NHGLPNVMGVLTHLDKF 183 (1068)
Q Consensus 117 ---~~k~rl~fIDtPGdl~---smld------~akvADlVLlVIDas~g~e~~t~eiL~~L~-~~GlP~vIvVLNKiDlv 183 (1068)
.....++||||||.+. .++. .+-..|-++||+|+..+. ........+. ..++- =+|+||+|..
T Consensus 177 ~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq--~~~~~a~~f~~~v~i~--giIlTKlD~~ 252 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ--DAVNTAKTFNERLGLT--GVVLTKLDGD 252 (428)
T ss_pred HHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH--HHHHHHHHHHhhCCCC--EEEEeCccCc
Confidence 1234689999999431 1222 123478899999997542 2233333332 24554 3479999965
Q ss_pred C
Q 046721 184 T 184 (1068)
Q Consensus 184 k 184 (1068)
.
T Consensus 253 ~ 253 (428)
T TIGR00959 253 A 253 (428)
T ss_pred c
Confidence 3
No 390
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=96.71 E-value=0.0032 Score=63.95 Aligned_cols=149 Identities=18% Similarity=0.182 Sum_probs=84.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccE-E--E-EeCCCeeEEEEeCCC--ChhHHH-HHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPV-T--V-VSGKKRRLQFVECPN--DINGMI-DCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~I-t--i-~~~~k~rl~fIDtPG--dl~sml-d~akvADlVLlV 147 (1068)
.+.|+++|.-.+|||+|+-+.+... ....+.|..... + + +-.....+.++||.| .|.++= -..+.+|.+|||
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLV 92 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLV 92 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEE
Confidence 4678999999999999987766542 111112211110 0 1 112356789999999 344321 134789999999
Q ss_pred EeCCCC--CchhHHHHHHHHHhCCCC-cEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 148 IDASHG--FEMETFEFLNLMQNHGLP-NVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 148 IDas~g--~e~~t~eiL~~L~~~GlP-~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
.|.+.. |+.---+++.+-.-.|-. .+++|-||+|+-+.. .-..+....+.. .-++..+..||+.+ .
T Consensus 93 yDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR---~Vt~qeAe~YAe---svGA~y~eTSAk~N-----~ 161 (218)
T KOG0088|consen 93 YDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEER---QVTRQEAEAYAE---SVGALYMETSAKDN-----V 161 (218)
T ss_pred EeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhh---hhhHHHHHHHHH---hhchhheecccccc-----c
Confidence 999742 222222333333333432 378899999986422 112222222211 13788899999854 5
Q ss_pred hhcchHHHHHH
Q 046721 225 DIGNLAEFISV 235 (1068)
Q Consensus 225 ei~nLlR~I~~ 235 (1068)
++..|...++.
T Consensus 162 Gi~elFe~Lt~ 172 (218)
T KOG0088|consen 162 GISELFESLTA 172 (218)
T ss_pred CHHHHHHHHHH
Confidence 56666544443
No 391
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=96.70 E-value=0.0017 Score=67.16 Aligned_cols=108 Identities=20% Similarity=0.277 Sum_probs=66.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc-ccCCCCce-----eccEEEEeCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEV-----RGPVTVVSGKKRRLQFVECPND--INGMI-DCAKFADLALL 146 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt-----~~~Iti~~~~k~rl~fIDtPGd--l~sml-d~akvADlVLl 146 (1068)
.+.++|+|.-++||||+|.+.++.. +...-.+. ...|. +.....++.++||.|. +.++. ...+.|...+|
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~-v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIK-VLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHH-hhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 4778999999999999999998652 32211111 00011 1123567888999883 44433 34588889999
Q ss_pred EEeCCCCCch-hHHHHHHHHHh--CCCCcEEEEEeCCCcCCc
Q 046721 147 LIDASHGFEM-ETFEFLNLMQN--HGLPNVMGVLTHLDKFTD 185 (1068)
Q Consensus 147 VIDas~g~e~-~t~eiL~~L~~--~GlP~vIvVLNKiDlvk~ 185 (1068)
|.+.+....- .+.+.-+-+++ ..+| .++|-||||++.+
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~~~IP-tV~vqNKIDlved 139 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKETERIP-TVFVQNKIDLVED 139 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHhccCC-eEEeeccchhhHh
Confidence 9987642211 11122222222 3688 5779999999864
No 392
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.69 E-value=0.0042 Score=65.05 Aligned_cols=83 Identities=14% Similarity=0.202 Sum_probs=43.7
Q ss_pred eeEEEEeCCCC--hhHH------HHHHHhcCEEEEEEeCCCCCchhHH--HHHHHHHhCCCCcEEEEEeCCCcCCcHHHH
Q 046721 120 RRLQFVECPND--INGM------IDCAKFADLALLLIDASHGFEMETF--EFLNLMQNHGLPNVMGVLTHLDKFTDKKKL 189 (1068)
Q Consensus 120 ~rl~fIDtPGd--l~sm------ld~akvADlVLlVIDas~g~e~~t~--eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l 189 (1068)
-.++||++.|- ...+ +...-..+.+|.|+|+..-...... .+...+ .... ++|+||+|++.....+
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi---~~AD-vIvlnK~D~~~~~~~i 160 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQI---AFAD-VIVLNKIDLVSDEQKI 160 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHH---CT-S-EEEEE-GGGHHHH--H
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcc---hhcC-EEEEeccccCChhhHH
Confidence 46789999882 2222 2223446899999999542111111 122222 2333 6699999999743233
Q ss_pred HHHHHHHHHHhcccccCCCeEE
Q 046721 190 RKTKQHLKHRFGTELYHGAKLF 211 (1068)
Q Consensus 190 ~~vkk~Lk~~~~~e~~~~~kVf 211 (1068)
..+.+.+++. .+.++|+
T Consensus 161 ~~~~~~ir~l-----np~a~Iv 177 (178)
T PF02492_consen 161 ERVREMIREL-----NPKAPIV 177 (178)
T ss_dssp HHHHHHHHHH------TTSEEE
T ss_pred HHHHHHHHHH-----CCCCEEe
Confidence 5555554433 4677765
No 393
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.65 E-value=0.0087 Score=66.06 Aligned_cols=84 Identities=15% Similarity=0.180 Sum_probs=53.1
Q ss_pred HHHhcCEEEEEEeCCCCC-chh-HHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 137 CAKFADLALLLIDASHGF-EME-TFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 137 ~akvADlVLlVIDas~g~-e~~-t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
.++.+|.+++|+|++.+. ... ...+|..+...++| +|+|+||+|+...........+. +.. .+.++|.+|
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~-~vIV~NK~DL~~~~~~~~~~~~~----~~~---~g~~v~~~S 104 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIE-PIIVLNKIDLLDDEDMEKEQLDI----YRN---IGYQVLMTS 104 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC-EEEEEECcccCCCHHHHHHHHHH----HHH---CCCeEEEEe
Confidence 478899999999998544 221 22455566668888 78899999997533211122222 211 257899999
Q ss_pred cccCCcCCchhhcchHHHH
Q 046721 215 GLIQGKYTKKDIGNLAEFI 233 (1068)
Q Consensus 215 Al~g~~y~~~ei~nLlR~I 233 (1068)
|+++ ..+..|...|
T Consensus 105 Aktg-----~gi~eLf~~l 118 (245)
T TIGR00157 105 SKNQ-----DGLKELIEAL 118 (245)
T ss_pred cCCc-----hhHHHHHhhh
Confidence 9865 4455554444
No 394
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.62 E-value=0.021 Score=65.52 Aligned_cols=82 Identities=21% Similarity=0.252 Sum_probs=47.1
Q ss_pred eEEEEeCCC--ChhHHHHHH---------HhcCEEEEEEeCCCCCchhH-HH-HHHHHHhCCCCcEEEEEeCCCcCCcHH
Q 046721 121 RLQFVECPN--DINGMIDCA---------KFADLALLLIDASHGFEMET-FE-FLNLMQNHGLPNVMGVLTHLDKFTDKK 187 (1068)
Q Consensus 121 rl~fIDtPG--dl~smld~a---------kvADlVLlVIDas~g~e~~t-~e-iL~~L~~~GlP~vIvVLNKiDlvk~~k 187 (1068)
..++|+|.| +...++..+ -..|.||.|||+........ .. +...+. .. =++|+||+|++...
T Consensus 92 d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~---~A-D~IvlnK~Dl~~~~- 166 (318)
T PRK11537 92 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG---YA-DRILLTKTDVAGEA- 166 (318)
T ss_pred CEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH---hC-CEEEEeccccCCHH-
Confidence 468899998 333444433 13488999999975332111 11 112222 22 26799999999743
Q ss_pred HHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 188 KLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 188 ~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
..+...++. +.+.++++..+
T Consensus 167 --~~~~~~l~~-----lnp~a~i~~~~ 186 (318)
T PRK11537 167 --EKLRERLAR-----INARAPVYTVV 186 (318)
T ss_pred --HHHHHHHHH-----hCCCCEEEEec
Confidence 233443332 35788888755
No 395
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.61 E-value=0.0019 Score=74.20 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=37.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc---cCCCCceeccEEEEeCCCeeEEEEeCCC
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT---KLKVPEVRGPVTVVSGKKRRLQFVECPN 129 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~---~~~~~tt~~~Iti~~~~k~rl~fIDtPG 129 (1068)
...+.|+|||+||+||||+||+|..... +..+.-|+..-.+. -...|.|+|+||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~--Ldk~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK--LDKKIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee--ccCCceeccCCc
Confidence 4568999999999999999999998642 22222222100011 255889999999
No 396
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.58 E-value=0.011 Score=53.55 Aligned_cols=68 Identities=22% Similarity=0.279 Sum_probs=49.5
Q ss_pred EEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCChhH-H---HHHHHhcCEEEEEEeCCCC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPNDING-M---IDCAKFADLALLLIDASHG 153 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGdl~s-m---ld~akvADlVLlVIDas~g 153 (1068)
+|++.|..|+||||+...|........ ..+.++. .++++|+|+.+.. . ...+..+|.++++++++..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g-----~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRG-----KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCC-----CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 367889999999999999888754311 1111222 8899999986654 2 5678899999999988754
Q ss_pred C
Q 046721 154 F 154 (1068)
Q Consensus 154 ~ 154 (1068)
.
T Consensus 72 ~ 72 (99)
T cd01983 72 A 72 (99)
T ss_pred h
Confidence 3
No 397
>PRK01889 GTPase RsgA; Reviewed
Probab=96.55 E-value=0.0086 Score=69.69 Aligned_cols=82 Identities=21% Similarity=0.295 Sum_probs=58.0
Q ss_pred HHhcCEEEEEEeCCCCCchh-HHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecc
Q 046721 138 AKFADLALLLIDASHGFEME-TFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGL 216 (1068)
Q Consensus 138 akvADlVLlVIDas~g~e~~-t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl 216 (1068)
|..+|.|++|+++...+... ...+|..+...|++ +++|+||+|++.+.. ...+.+... ..+.+||++|+.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~-piIVLNK~DL~~~~~---~~~~~~~~~-----~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAE-PVIVLTKADLCEDAE---EKIAEVEAL-----APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCC-EEEEEEChhcCCCHH---HHHHHHHHh-----CCCCcEEEEECC
Confidence 57899999999998777663 34688888999998 577999999986422 222222222 347899999998
Q ss_pred cCCcCCchhhcchHHHH
Q 046721 217 IQGKYTKKDIGNLAEFI 233 (1068)
Q Consensus 217 ~g~~y~~~ei~nLlR~I 233 (1068)
++ .++..|..+|
T Consensus 181 ~g-----~gl~~L~~~L 192 (356)
T PRK01889 181 DG-----EGLDVLAAWL 192 (356)
T ss_pred CC-----ccHHHHHHHh
Confidence 54 4455555554
No 398
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.54 E-value=0.015 Score=54.81 Aligned_cols=70 Identities=19% Similarity=0.223 Sum_probs=50.0
Q ss_pred EEEEECC-CCCChhHHHHHHHhccccCCCCceeccEEEE-eCCCeeEEEEeCCCChhH-HHHHHHhcCEEEEEEeCCC
Q 046721 78 VVVVQGP-PQVGKSLLIKCLIKHYTKLKVPEVRGPVTVV-SGKKRRLQFVECPNDING-MIDCAKFADLALLLIDASH 152 (1068)
Q Consensus 78 ~VaVVG~-pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~-~~~k~rl~fIDtPGdl~s-mld~akvADlVLlVIDas~ 152 (1068)
+|+|+|. .|+||||+...|....... ..++.++ ......++++|||+.+.. ....+..||.+|++++++.
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~-----~~~vl~~d~d~~~d~viiD~p~~~~~~~~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARR-----GKRVLLIDLDPQYDYIIIDTPPSLGLLTRNALAAADLVLIPVQPSP 73 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhC-----CCcEEEEeCCCCCCEEEEeCcCCCCHHHHHHHHHCCEEEEeccCCH
Confidence 3778885 7999999888877665321 1123333 233578999999987654 5567789999999998863
No 399
>PRK00098 GTPase RsgA; Reviewed
Probab=96.52 E-value=0.0032 Score=71.40 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-.+++++|++|+|||||||+|++..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 3579999999999999999999863
No 400
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.51 E-value=0.0024 Score=71.82 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
.++.+.+++|++|||||||||+|...
T Consensus 162 l~~~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 162 LAGKITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred hcCCeEEEECCCCCcHHHHHHhhCch
Confidence 35678999999999999999999985
No 401
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.034 Score=55.49 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=79.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc-ccCCCCce----eccEEEEeCCCeeEEEEeCCC--ChhH-HHHHHHhcCEEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEV----RGPVTVVSGKKRRLQFVECPN--DING-MIDCAKFADLALLLI 148 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt----~~~Iti~~~~k~rl~fIDtPG--dl~s-mld~akvADlVLlVI 148 (1068)
+.-.|||--++|||.|+..++... -..-+++. ...|.-+++.+.+++++||.| .|.+ +....+.|-..|+|.
T Consensus 12 fkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvy 91 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 91 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEE
Confidence 456789999999999998887652 11112221 112334567788999999999 4666 445568899999999
Q ss_pred eCCCCCchhHHHHHH-HH---HhCCCCc--EEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 149 DASHGFEMETFEFLN-LM---QNHGLPN--VMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 149 Das~g~e~~t~eiL~-~L---~~~GlP~--vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
|.+.. .+..+|+ +| +..--|+ ++++-||.|+-.... ...+.++.. .+ .+.-++..||++|
T Consensus 92 ditrr---stynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~fa-----ee--ngl~fle~saktg 158 (215)
T KOG0097|consen 92 DITRR---STYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFA-----EE--NGLMFLEASAKTG 158 (215)
T ss_pred Eehhh---hhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHH-----hh--cCeEEEEeccccc
Confidence 98743 2333433 22 2233342 455669999864211 122222211 11 3555667888876
No 402
>PRK13796 GTPase YqeH; Provisional
Probab=96.43 E-value=0.01 Score=69.29 Aligned_cols=97 Identities=18% Similarity=0.097 Sum_probs=58.3
Q ss_pred ChhHHHHHHHhcC-EEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCC
Q 046721 130 DINGMIDCAKFAD-LALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGA 208 (1068)
Q Consensus 130 dl~smld~akvAD-lVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~ 208 (1068)
++..++..+..+| +|++|||+.+........+...+ .+.| +++|+||+|+.........+...+..+.........
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kp-viLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~ 134 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNP-VLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPV 134 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCC-EEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcC
Confidence 5777888888777 99999999763333222333322 2556 889999999975322222333333333222222334
Q ss_pred eEEEEecccCCcCCchhhcchHHHHH
Q 046721 209 KLFKLSGLIQGKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 209 kVf~ISAl~g~~y~~~ei~nLlR~I~ 234 (1068)
.++.+||+++ ..+..|...|.
T Consensus 135 ~v~~vSAk~g-----~gI~eL~~~I~ 155 (365)
T PRK13796 135 DVVLISAQKG-----HGIDELLEAIE 155 (365)
T ss_pred cEEEEECCCC-----CCHHHHHHHHH
Confidence 7899999865 45566666663
No 403
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=96.40 E-value=0.073 Score=60.06 Aligned_cols=78 Identities=24% Similarity=0.253 Sum_probs=45.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCCCCceec-cEEE--EeC----CCeeEEEEeCCCChhH--HHH----HHHh
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRG-PVTV--VSG----KKRRLQFVECPNDING--MID----CAKF 140 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~-~Iti--~~~----~k~rl~fIDtPGdl~s--mld----~akv 140 (1068)
+.-..|.|+|-.++||||||..|-+..+... . ++ .+.+ +.. .-.|+.++-..|++.. +|. +...
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e~~Kk-g--sgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ 126 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSETVKK-G--SGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSL 126 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhcccccCC-C--CCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCc
Confidence 3446899999999999999999998742111 1 11 1111 111 1335555655665442 333 3334
Q ss_pred cC-EEEEEEeCCCCC
Q 046721 141 AD-LALLLIDASHGF 154 (1068)
Q Consensus 141 AD-lVLlVIDas~g~ 154 (1068)
|+ +|||++|.+.++
T Consensus 127 aetlviltasms~Pw 141 (473)
T KOG3905|consen 127 AETLVILTASMSNPW 141 (473)
T ss_pred cceEEEEEEecCCcH
Confidence 44 677788887653
No 404
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.36 E-value=0.0088 Score=69.70 Aligned_cols=97 Identities=19% Similarity=0.175 Sum_probs=58.9
Q ss_pred ChhHHHHHH-HhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCC
Q 046721 130 DINGMIDCA-KFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGA 208 (1068)
Q Consensus 130 dl~smld~a-kvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~ 208 (1068)
++..++..+ ..+|+||+|+|+.........++.+.+. +.| +++|+||+|++........+.+.+++++........
T Consensus 52 ~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~--~~p-iilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~ 128 (360)
T TIGR03597 52 DFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVG--GNP-VLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPV 128 (360)
T ss_pred HHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhC--CCC-EEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcC
Confidence 466666665 6889999999996544333334444432 456 899999999985322223334444333322212234
Q ss_pred eEEEEecccCCcCCchhhcchHHHHH
Q 046721 209 KLFKLSGLIQGKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 209 kVf~ISAl~g~~y~~~ei~nLlR~I~ 234 (1068)
.++.+||+++ ..+..|...|.
T Consensus 129 ~i~~vSAk~g-----~gv~eL~~~l~ 149 (360)
T TIGR03597 129 DIILVSAKKG-----NGIDELLDKIK 149 (360)
T ss_pred cEEEecCCCC-----CCHHHHHHHHH
Confidence 6899999865 45666666663
No 405
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.35 E-value=0.0056 Score=69.11 Aligned_cols=26 Identities=35% Similarity=0.439 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+.+++++|++|+|||||||+|++..
T Consensus 160 ~~k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 160 KGKTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ccceEEEECCCCCCHHHHHHHHhchh
Confidence 34789999999999999999999863
No 406
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.30 E-value=0.011 Score=63.06 Aligned_cols=65 Identities=20% Similarity=0.419 Sum_probs=44.1
Q ss_pred eeEEEEeCCCCh---------hHHHHHHHhcC---EEEEEEeCCCCCchhHH--HHHHHHH---hCCCCcEEEEEeCCCc
Q 046721 120 RRLQFVECPNDI---------NGMIDCAKFAD---LALLLIDASHGFEMETF--EFLNLMQ---NHGLPNVMGVLTHLDK 182 (1068)
Q Consensus 120 ~rl~fIDtPGdl---------~smld~akvAD---lVLlVIDas~g~e~~t~--eiL~~L~---~~GlP~vIvVLNKiDl 182 (1068)
..+.++||||.+ -.+++.++.-+ .+++++|+..-++..-+ .+|++|. ..-+| .|-|++|+|+
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P-~INvlsKMDL 176 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVP-HINVLSKMDL 176 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCc-chhhhhHHHH
Confidence 468899999932 24666665533 48899998765554333 3444443 36789 5889999999
Q ss_pred CCc
Q 046721 183 FTD 185 (1068)
Q Consensus 183 vk~ 185 (1068)
+++
T Consensus 177 lk~ 179 (273)
T KOG1534|consen 177 LKD 179 (273)
T ss_pred hhh
Confidence 974
No 407
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.24 E-value=0.022 Score=64.86 Aligned_cols=128 Identities=23% Similarity=0.293 Sum_probs=74.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccccC-------CCCc-------------eeccEEEEe----------------
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYTKL-------KVPE-------------VRGPVTVVS---------------- 116 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~-------~~~t-------------t~~~Iti~~---------------- 116 (1068)
..-|.+|.+||-+|+||||-|..|...+... -..| .+-++.++.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 4559999999999999999888887642100 0000 011222221
Q ss_pred ---CCCeeEEEEeCCCChhH----------HHHHHHhcCE-----EEEEEeCCCCCchhHH-HHHHHHHhCCCCcEEEEE
Q 046721 117 ---GKKRRLQFVECPNDING----------MIDCAKFADL-----ALLLIDASHGFEMETF-EFLNLMQNHGLPNVMGVL 177 (1068)
Q Consensus 117 ---~~k~rl~fIDtPGdl~s----------mld~akvADl-----VLlVIDas~g~e~~t~-eiL~~L~~~GlP~vIvVL 177 (1068)
..+.-++++||.|.++. +.+.++-.+. +++++||+.|-..-.. +.++ .+.++. =+++
T Consensus 216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~--eav~l~--GiIl 291 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFN--EAVGLD--GIIL 291 (340)
T ss_pred HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHH--HhcCCc--eEEE
Confidence 13567999999995442 3333444444 8899999987653222 2222 234565 3589
Q ss_pred eCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 178 THLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 178 NKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
||+|.....-.+-.+... + +.||.+|-
T Consensus 292 TKlDgtAKGG~il~I~~~----l------~~PI~fiG 318 (340)
T COG0552 292 TKLDGTAKGGIILSIAYE----L------GIPIKFIG 318 (340)
T ss_pred EecccCCCcceeeeHHHH----h------CCCEEEEe
Confidence 999965432222222222 2 66777775
No 408
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.0064 Score=61.85 Aligned_cols=134 Identities=18% Similarity=0.227 Sum_probs=77.2
Q ss_pred EEEECCCCCChhHHHHHHHhcc-ccCCCCce----e-ccEEE-EeC-----C--CeeEEEEeCCC--ChhHHHHH-HHhc
Q 046721 79 VVVQGPPQVGKSLLIKCLIKHY-TKLKVPEV----R-GPVTV-VSG-----K--KRRLQFVECPN--DINGMIDC-AKFA 141 (1068)
Q Consensus 79 VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt----~-~~Iti-~~~-----~--k~rl~fIDtPG--dl~smld~-akvA 141 (1068)
...+|-+|||||+++-.-+... ...-+.|. + ..+.. .++ . +..++++||.| .|.++..+ .+.|
T Consensus 12 fLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDA 91 (219)
T KOG0081|consen 12 FLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDA 91 (219)
T ss_pred HHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhh
Confidence 3467999999998764443321 11111110 0 01111 111 2 33578899999 46664333 4777
Q ss_pred CEEEEEEeCCCCCc-hhHHHHHHHHHhC---CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEeccc
Q 046721 142 DLALLLIDASHGFE-METFEFLNLMQNH---GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLI 217 (1068)
Q Consensus 142 DlVLlVIDas~g~e-~~t~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~ 217 (1068)
=..||+.|.+..-. ......|+.|+.| --|-+|++-||.|+.....--......|...+ +.+.|..||.+
T Consensus 92 MGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~ky------glPYfETSA~t 165 (219)
T KOG0081|consen 92 MGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKY------GLPYFETSACT 165 (219)
T ss_pred ccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHh------CCCeeeecccc
Confidence 78889999864211 1223466667765 34789999999999752221122223333333 78899999987
Q ss_pred C
Q 046721 218 Q 218 (1068)
Q Consensus 218 g 218 (1068)
|
T Consensus 166 g 166 (219)
T KOG0081|consen 166 G 166 (219)
T ss_pred C
Confidence 6
No 409
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.20 E-value=0.0038 Score=68.11 Aligned_cols=78 Identities=26% Similarity=0.381 Sum_probs=56.3
Q ss_pred EEEEECCCCCChhHHHHHHHhccccCCCCceeccEE---EEeCCCeeEEEEeCCCChh----------HHHHHHHhcCEE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVT---VVSGKKRRLQFVECPNDIN----------GMIDCAKFADLA 144 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~It---i~~~~k~rl~fIDtPGdl~----------smld~akvADlV 144 (1068)
.|+++|.|.+|||||+..|++.++.........-+| +...+..++++.|.||-+. .++..|+-|.++
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli 140 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLI 140 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccEE
Confidence 688999999999999999999864321111111122 2334567899999999432 367778999999
Q ss_pred EEEEeCCCCCc
Q 046721 145 LLLIDASHGFE 155 (1068)
Q Consensus 145 LlVIDas~g~e 155 (1068)
++|+|+..++.
T Consensus 141 ~~vld~~kp~~ 151 (358)
T KOG1487|consen 141 FIVLDVLKPLS 151 (358)
T ss_pred EEEeeccCccc
Confidence 99999987664
No 410
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.14 E-value=0.016 Score=65.38 Aligned_cols=82 Identities=17% Similarity=0.222 Sum_probs=53.0
Q ss_pred HHhcCEEEEEEeCCCCC-chhH-HHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEec
Q 046721 138 AKFADLALLLIDASHGF-EMET-FEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSG 215 (1068)
Q Consensus 138 akvADlVLlVIDas~g~-e~~t-~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISA 215 (1068)
+..+|++|+|+|+..+. .... ..+|..+...++| +++|+||+|+..+... ..... ... ..+.+++++||
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip-~iIVlNK~DL~~~~~~-~~~~~----~~~---~~g~~v~~vSA 146 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIE-PVIVLTKADLLDDEEE-ELELV----EAL---ALGYPVLAVSA 146 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCC-EEEEEEHHHCCChHHH-HHHHH----HHH---hCCCeEEEEEC
Confidence 67899999999998765 3222 3466667778888 7889999999864221 11111 111 13578999999
Q ss_pred ccCCcCCchhhcchHHHH
Q 046721 216 LIQGKYTKKDIGNLAEFI 233 (1068)
Q Consensus 216 l~g~~y~~~ei~nLlR~I 233 (1068)
+++ ..+..|...|
T Consensus 147 ~~g-----~gi~~L~~~L 159 (287)
T cd01854 147 KTG-----EGLDELREYL 159 (287)
T ss_pred CCC-----ccHHHHHhhh
Confidence 865 4444444444
No 411
>PHA02518 ParA-like protein; Provisional
Probab=96.10 E-value=0.089 Score=55.69 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=41.8
Q ss_pred CeeEEEEeCCCChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHh-----CCCCcEEEEEeCCCc
Q 046721 119 KRRLQFVECPNDING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQN-----HGLPNVMGVLTHLDK 182 (1068)
Q Consensus 119 k~rl~fIDtPGdl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~-----~GlP~vIvVLNKiDl 182 (1068)
...++||||||.+.. +..++..||.||+++.++.---.....++..+.. .+++.+.+++|..+.
T Consensus 76 ~~d~viiD~p~~~~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 76 GYDYVVVDGAPQDSELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred cCCEEEEeCCCCccHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 458999999987655 6677899999999998864211122233333332 256656667777653
No 412
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.08 E-value=0.035 Score=64.34 Aligned_cols=89 Identities=10% Similarity=0.156 Sum_probs=50.1
Q ss_pred eeEEEEeCCC--ChhHHHHHH--------HhcCEEEEEEeCCCCCc------hh--------------HHHHHHHHHhC-
Q 046721 120 RRLQFVECPN--DINGMIDCA--------KFADLALLLIDASHGFE------ME--------------TFEFLNLMQNH- 168 (1068)
Q Consensus 120 ~rl~fIDtPG--dl~smld~a--------kvADlVLlVIDas~g~e------~~--------------t~eiL~~L~~~- 168 (1068)
-..++|+|.| +...++..+ -..|.||.|||+..... .. ...+...+..|
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 3578899998 433444443 24578999999974321 00 00011111111
Q ss_pred CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 169 GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 169 GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
...- ++|+||+|++. ...+..+.+.|+... ++.++++..+
T Consensus 173 ~~AD-~IvlnK~Dl~~-~~~l~~~~~~l~~~~----~~~a~i~~~~ 212 (341)
T TIGR02475 173 ACAD-LVILNKADLLD-AAGLARVRAEIAAEL----PRAVKIVEAS 212 (341)
T ss_pred HhCC-EEEEeccccCC-HHHHHHHHHHHHHhC----CCCCEEEEcc
Confidence 2232 67999999997 455666666665432 3345777654
No 413
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.04 E-value=0.013 Score=60.56 Aligned_cols=66 Identities=9% Similarity=0.024 Sum_probs=49.2
Q ss_pred CCeeEEEEeCCCChhH-HHHHH--HhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcC
Q 046721 118 KKRRLQFVECPNDING-MIDCA--KFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKF 183 (1068)
Q Consensus 118 ~k~rl~fIDtPGdl~s-mld~a--kvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlv 183 (1068)
....++|+|||+.+.. .+..+ ..||.+|+|+.+...--.....++..+...+++..-+|+|+++..
T Consensus 66 ~~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 3568999999876654 34444 589999999987654444556788888888998666789998753
No 414
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.94 E-value=0.015 Score=60.77 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=40.0
Q ss_pred CEEEEEEeCCCCCchhHHHHHHH--HHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHH
Q 046721 142 DLALLLIDASHGFEMETFEFLNL--MQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLK 197 (1068)
Q Consensus 142 DlVLlVIDas~g~e~~t~eiL~~--L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk 197 (1068)
|+||+|+||..++......++.. +...+.| +|+|+||+|++++ ..+....+.++
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp-~IlVlNK~DL~~~-~~l~~~~~~~~ 56 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKK-LVLVLNKIDLVPK-ENVEKWLKYLR 56 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCC-EEEEEehhhcCCH-HHHHHHHHHHH
Confidence 89999999998887776777777 4455677 7999999999863 44444444443
No 415
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=95.91 E-value=0.044 Score=64.95 Aligned_cols=65 Identities=26% Similarity=0.337 Sum_probs=39.2
Q ss_pred CeeEEEEeCCCChh---------------HHHH-HHHhcCEEEEEE-eCCCCCchhH-HHHHHHHHhCCCCcEEEEEeCC
Q 046721 119 KRRLQFVECPNDIN---------------GMID-CAKFADLALLLI-DASHGFEMET-FEFLNLMQNHGLPNVMGVLTHL 180 (1068)
Q Consensus 119 k~rl~fIDtPGdl~---------------smld-~akvADlVLlVI-Das~g~e~~t-~eiL~~L~~~GlP~vIvVLNKi 180 (1068)
-+++++||.||-++ +|-. .......|||+| |++-..+... -.+.+.+--+|.. .|+||+|+
T Consensus 411 LqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrR-TIfVLTKV 489 (980)
T KOG0447|consen 411 LQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRR-TIFVLTKV 489 (980)
T ss_pred cceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCe-eEEEEeec
Confidence 46899999999322 2221 235567777776 4442222111 1344445557776 78999999
Q ss_pred CcCC
Q 046721 181 DKFT 184 (1068)
Q Consensus 181 Dlvk 184 (1068)
|+..
T Consensus 490 DlAE 493 (980)
T KOG0447|consen 490 DLAE 493 (980)
T ss_pred chhh
Confidence 9975
No 416
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.04 Score=63.50 Aligned_cols=110 Identities=22% Similarity=0.227 Sum_probs=66.4
Q ss_pred CCCCCCeEEEEECCCCCChhHHHHHHHhcccc----------C----------CCCceeccEEEE------------e--
Q 046721 71 YGEPPPYVVVVQGPPQVGKSLLIKCLIKHYTK----------L----------KVPEVRGPVTVV------------S-- 116 (1068)
Q Consensus 71 ~~~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~----------~----------~~~tt~~~Iti~------------~-- 116 (1068)
+..+.|-+|.+||+.|+||||.+-.|...+-. . ....++..|-++ .
T Consensus 96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~eg 175 (483)
T KOG0780|consen 96 PKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEG 175 (483)
T ss_pred cccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHH
Confidence 45567889999999999999988777653200 0 000011111111 0
Q ss_pred -----CCCeeEEEEeCCCC-------hhHHHHHHH--hcCEEEEEEeCCCCCchhHHHHHHHH-HhCCCCcEEEEEeCCC
Q 046721 117 -----GKKRRLQFVECPND-------INGMIDCAK--FADLALLLIDASHGFEMETFEFLNLM-QNHGLPNVMGVLTHLD 181 (1068)
Q Consensus 117 -----~~k~rl~fIDtPGd-------l~smld~ak--vADlVLlVIDas~g~e~~t~eiL~~L-~~~GlP~vIvVLNKiD 181 (1068)
..+..++++||.|. |..|++..+ .-|.||||+||+-|...+.. .... ...++- -+++||+|
T Consensus 176 v~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Q--a~aFk~~vdvg--~vIlTKlD 251 (483)
T KOG0780|consen 176 VDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQ--ARAFKETVDVG--AVILTKLD 251 (483)
T ss_pred HHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHH--HHHHHHhhccc--eEEEEecc
Confidence 13567999999993 334655543 36999999999977644322 1111 223554 35799999
Q ss_pred cCC
Q 046721 182 KFT 184 (1068)
Q Consensus 182 lvk 184 (1068)
...
T Consensus 252 Gha 254 (483)
T KOG0780|consen 252 GHA 254 (483)
T ss_pred cCC
Confidence 764
No 417
>PRK12288 GTPase RsgA; Reviewed
Probab=95.85 E-value=0.034 Score=64.57 Aligned_cols=85 Identities=14% Similarity=0.208 Sum_probs=53.7
Q ss_pred HHhcCEEEEEEeCCCCCchhH-HHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecc
Q 046721 138 AKFADLALLLIDASHGFEMET-FEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGL 216 (1068)
Q Consensus 138 akvADlVLlVIDas~g~e~~t-~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl 216 (1068)
|..+|.+++|.+....+.... ..+|..+...|+| +|+|+||+|++.+.. ...+.+.+. .+. ..+.++|++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~-~VIVlNK~DL~~~~~-~~~~~~~~~-~y~---~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIE-PLIVLNKIDLLDDEG-RAFVNEQLD-IYR---NIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCC-EEEEEECccCCCcHH-HHHHHHHHH-HHH---hCCCeEEEEeCC
Confidence 577999999998775554332 2455566778998 678999999986422 111222111 111 125689999998
Q ss_pred cCCcCCchhhcchHHHH
Q 046721 217 IQGKYTKKDIGNLAEFI 233 (1068)
Q Consensus 217 ~g~~y~~~ei~nLlR~I 233 (1068)
++ .++..|...|
T Consensus 192 tg-----~GideL~~~L 203 (347)
T PRK12288 192 TG-----EGLEELEAAL 203 (347)
T ss_pred CC-----cCHHHHHHHH
Confidence 65 4566666555
No 418
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=95.77 E-value=0.025 Score=60.37 Aligned_cols=109 Identities=23% Similarity=0.283 Sum_probs=68.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc-cccCCCCceeccEE--E-E-eCCCeeEEEEeCCC--ChhHHHH--HHHhcCEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPVT--V-V-SGKKRRLQFVECPN--DINGMID--CAKFADLALL 146 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~It--i-~-~~~k~rl~fIDtPG--dl~smld--~akvADlVLl 146 (1068)
.+.++|||-..+|||.|+-+.+.. +....+.|.-.... + + .++..++.++||.| ++.. ++ ....+|++|+
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDr-lRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDR-LRPLSYPQTDVFLL 82 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCccccc-ccccCCCCCCEEEE
Confidence 467899999999999877666544 33333343322222 2 2 25567889999999 4443 22 4578899998
Q ss_pred EEeCCCCCchh--HHHHHHHHHh--CCCCcEEEEEeCCCcCCcH
Q 046721 147 LIDASHGFEME--TFEFLNLMQN--HGLPNVMGVLTHLDKFTDK 186 (1068)
Q Consensus 147 VIDas~g~e~~--t~eiL~~L~~--~GlP~vIvVLNKiDlvk~~ 186 (1068)
+.+.+.+..-+ ...-+-.+.. .+.| +|+|.+|.|+-.+.
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~cp~vp-iiLVGtk~DLr~d~ 125 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHCPNVP-IILVGTKADLRDDP 125 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhCCCCC-EEEEeehHHhhhCH
Confidence 88876543222 1112222222 4677 89999999997543
No 419
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=95.74 E-value=0.077 Score=61.03 Aligned_cols=130 Identities=18% Similarity=0.205 Sum_probs=73.9
Q ss_pred EEEEECCCCCChhHHHHHHHhcccc------------------CCCCc--------eeccEEEE-------------e-C
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTK------------------LKVPE--------VRGPVTVV-------------S-G 117 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~------------------~~~~t--------t~~~Iti~-------------~-~ 117 (1068)
+..|-|+=|+|||||+|.|+.+... ..+.. +.|.|... . .
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~ 82 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRR 82 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhcc
Confidence 4566789999999999999975211 11111 12222211 0 1
Q ss_pred CCeeEEEEeCCCC--hhHHHH---------HHHhcCEEEEEEeCCCCCchhHHHHHHHHHhC-CCCcEEEEEeCCCcCCc
Q 046721 118 KKRRLQFVECPND--INGMID---------CAKFADLALLLIDASHGFEMETFEFLNLMQNH-GLPNVMGVLTHLDKFTD 185 (1068)
Q Consensus 118 ~k~rl~fIDtPGd--l~smld---------~akvADlVLlVIDas~g~e~~t~eiL~~L~~~-GlP~vIvVLNKiDlvk~ 185 (1068)
.+-..++|+|.|- =..++. ..-..|.+|-||||......... +-..+..| ... =++|+||.|++.+
T Consensus 83 ~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~-~~~~~~~Qia~A-D~ivlNK~Dlv~~ 160 (323)
T COG0523 83 DRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDA-IAELAEDQLAFA-DVIVLNKTDLVDA 160 (323)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHH-HHHHHHHHHHhC-cEEEEecccCCCH
Confidence 1235788899882 111111 12345889999999864432211 11222222 233 2679999999985
Q ss_pred HHHHHHHHHHHHHHhcccccCCCeEEEEec
Q 046721 186 KKKLRKTKQHLKHRFGTELYHGAKLFKLSG 215 (1068)
Q Consensus 186 ~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISA 215 (1068)
. .+..+.+.+++ ..+.++++..|.
T Consensus 161 ~-~l~~l~~~l~~-----lnp~A~i~~~~~ 184 (323)
T COG0523 161 E-ELEALEARLRK-----LNPRARIIETSY 184 (323)
T ss_pred H-HHHHHHHHHHH-----hCCCCeEEEccc
Confidence 4 45555555443 368899998874
No 420
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.64 E-value=0.029 Score=60.86 Aligned_cols=65 Identities=25% Similarity=0.384 Sum_probs=38.9
Q ss_pred CeeEEEEeCCCC---------hhHHHHHHHhcC---EEEEEEeCCCCCchhHH-----HHHHHHHhCCCCcEEEEEeCCC
Q 046721 119 KRRLQFVECPND---------INGMIDCAKFAD---LALLLIDASHGFEMETF-----EFLNLMQNHGLPNVMGVLTHLD 181 (1068)
Q Consensus 119 k~rl~fIDtPGd---------l~smld~akvAD---lVLlVIDas~g~e~~t~-----eiL~~L~~~GlP~vIvVLNKiD 181 (1068)
...+.++||||. +..++..+...| +++-++|+..--++..+ -.|..+....+|+ |-|+.|+|
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melph-VNvlSK~D 174 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPH-VNVLSKAD 174 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccc-hhhhhHhH
Confidence 457899999992 334555554455 56667776543333222 1222333357784 77999999
Q ss_pred cCC
Q 046721 182 KFT 184 (1068)
Q Consensus 182 lvk 184 (1068)
+++
T Consensus 175 l~~ 177 (290)
T KOG1533|consen 175 LLK 177 (290)
T ss_pred HHH
Confidence 875
No 421
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.38 E-value=0.035 Score=47.75 Aligned_cols=47 Identities=30% Similarity=0.524 Sum_probs=27.7
Q ss_pred HHHHHHhcCEEEEEEeCCC--CCchhHH-HHHHHHHhC--CCCcEEEEEeCCC
Q 046721 134 MIDCAKFADLALLLIDASH--GFEMETF-EFLNLMQNH--GLPNVMGVLTHLD 181 (1068)
Q Consensus 134 mld~akvADlVLlVIDas~--g~e~~t~-eiL~~L~~~--GlP~vIvVLNKiD 181 (1068)
+...+..+++|||++|.|+ |.+.+.. .++..++.. +.| +++|+||+|
T Consensus 7 i~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P-~i~V~nK~D 58 (58)
T PF06858_consen 7 ITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKP-VIVVLNKID 58 (58)
T ss_dssp HHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS--EEEEE--TT
T ss_pred HHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCC-EEEEEeccC
Confidence 4444578899999999984 4443333 455555553 677 899999998
No 422
>PRK13695 putative NTPase; Provisional
Probab=95.38 E-value=0.12 Score=53.64 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.5
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
.|+|+|.+++|||||+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999997654
No 423
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.15 Score=58.10 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
--.+|+|+|.-|+|||||++.|.+.
T Consensus 187 df~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhcc
Confidence 3468999999999999999999885
No 424
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.36 E-value=0.049 Score=56.51 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
+.+++|+|..|+||||||..|+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~ 25 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRK 25 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHH
Confidence 578999999999999999999765
No 425
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.16 E-value=0.035 Score=74.07 Aligned_cols=107 Identities=17% Similarity=0.188 Sum_probs=60.7
Q ss_pred EEEEECCCCCChhHHHHHHHhccccC-C--CCcee--ccEE-EEeCCCeeEEEEeCCCC--------------hhHHHHH
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKL-K--VPEVR--GPVT-VVSGKKRRLQFVECPND--------------INGMIDC 137 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~-~--~~tt~--~~It-i~~~~k~rl~fIDtPGd--------------l~smld~ 137 (1068)
-..|||++|+||||||+.---...-. . ...+. ++.. +-.....+-++|||+|. ...+++.
T Consensus 113 WYlviG~~gsGKtt~l~~sgl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~ 192 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNSGLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGL 192 (1169)
T ss_pred CEEEECCCCCchhHHHHhCCCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHHH
Confidence 45799999999999987752121100 0 00010 1011 11112457889999992 2235555
Q ss_pred H------HhcCEEEEEEeCCCCCc--hhHH--------HHHH-HHHhC--CCCcEEEEEeCCCcCCc
Q 046721 138 A------KFADLALLLIDASHGFE--METF--------EFLN-LMQNH--GLPNVMGVLTHLDKFTD 185 (1068)
Q Consensus 138 a------kvADlVLlVIDas~g~e--~~t~--------eiL~-~L~~~--GlP~vIvVLNKiDlvk~ 185 (1068)
+ .-.|.||++||++.-.. .+.. .-|. +.... .+| |.+|+||+|++..
T Consensus 193 L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~P-VYvv~Tk~Dll~G 258 (1169)
T TIGR03348 193 LRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFP-VYLVLTKADLLAG 258 (1169)
T ss_pred HHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecchhhcC
Confidence 5 34799999999975332 1111 1122 22233 467 8999999999853
No 426
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.07 E-value=0.26 Score=51.16 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
..+..|+|-|+||+|||||+..|...
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHH
Confidence 34678999999999999999888864
No 427
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=95.06 E-value=0.43 Score=57.70 Aligned_cols=79 Identities=24% Similarity=0.296 Sum_probs=44.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEe------CCCeeEEEEeCCCC--hhHHHHHH----Hhc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVS------GKKRRLQFVECPND--INGMIDCA----KFA 141 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~------~~k~rl~fIDtPGd--l~smld~a----kvA 141 (1068)
++-..|.|+|-.++||||||.+|.+.... .. +.--.++... ....++.++...|+ +..+|..+ ...
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~~-~~-~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIEDP-KK-GLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCCC-CC-CcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 34478999999999999999999764221 11 1111223211 12346666666553 23344432 222
Q ss_pred C-EEEEEEeCCCCC
Q 046721 142 D-LALLLIDASHGF 154 (1068)
Q Consensus 142 D-lVLlVIDas~g~ 154 (1068)
+ +||+|+|-+.++
T Consensus 101 ~t~vvIvlDlS~PW 114 (472)
T PF05783_consen 101 NTLVVIVLDLSKPW 114 (472)
T ss_pred ceEEEEEecCCChH
Confidence 2 567778877653
No 428
>PF05729 NACHT: NACHT domain
Probab=95.02 E-value=0.076 Score=53.34 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=22.4
Q ss_pred eEEEEECCCCCChhHHHHHHHhcccc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTK 102 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~ 102 (1068)
+++.|.|.+|+|||||+..|+.....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh
Confidence 47899999999999999999887543
No 429
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=0.071 Score=64.09 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
-.|||||.+|+||||+++.|+.-
T Consensus 379 ekVaIvG~nGsGKSTilr~LlrF 401 (591)
T KOG0057|consen 379 EKVAIVGSNGSGKSTILRLLLRF 401 (591)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999974
No 430
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.96 E-value=0.22 Score=50.30 Aligned_cols=95 Identities=18% Similarity=0.267 Sum_probs=52.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEe-CC-CChhH-HHHHHHhcCEEEEEEeC-C
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVE-CP-NDING-MIDCAKFADLALLLIDA-S 151 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fID-tP-Gdl~s-mld~akvADlVLlVIDa-s 151 (1068)
--+++|+|++|+|||||++.|.+.... ..|.|.+ .....+.++. .. |.... .+..+-..+-=++++|- .
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-----~~G~i~~--~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP-----DEGIVTW--GSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC-----CceEEEE--CCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 358999999999999999999987531 1343333 1223455543 32 22221 22222233444555563 3
Q ss_pred CCCchhHH-HHHHHHHhCCCCcEEEEEeC
Q 046721 152 HGFEMETF-EFLNLMQNHGLPNVMGVLTH 179 (1068)
Q Consensus 152 ~g~e~~t~-eiL~~L~~~GlP~vIvVLNK 179 (1068)
.+++..+. .+...+...+ . .|+++++
T Consensus 99 ~~LD~~~~~~l~~~l~~~~-~-til~~th 125 (144)
T cd03221 99 NHLDLESIEALEEALKEYP-G-TVILVSH 125 (144)
T ss_pred cCCCHHHHHHHHHHHHHcC-C-EEEEEEC
Confidence 55665554 4555666554 2 4555554
No 431
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.89 E-value=0.13 Score=60.82 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.-.+.|+|+|.+++|||||+++|...+
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999999863
No 432
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=94.74 E-value=0.14 Score=55.71 Aligned_cols=108 Identities=13% Similarity=0.251 Sum_probs=64.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeC-----CCeeEEEEeCCCC---hhHHHH-----HHHhcCE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSG-----KKRRLQFVECPND---INGMID-----CAKFADL 143 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~-----~k~rl~fIDtPGd---l~smld-----~akvADl 143 (1068)
+.|.++|.+|+|||++=..+...+.........+.|-+..+ .+--+.++||.|. +...+. .....++
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~v 84 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQV 84 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehee
Confidence 56899999999999765555544311000000111223222 2356778999983 222221 3578999
Q ss_pred EEEEEeCCCC-Cchh---HHHHHHHHHhCC-CCcEEEEEeCCCcCC
Q 046721 144 ALLLIDASHG-FEME---TFEFLNLMQNHG-LPNVMGVLTHLDKFT 184 (1068)
Q Consensus 144 VLlVIDas~g-~e~~---t~eiL~~L~~~G-lP~vIvVLNKiDlvk 184 (1068)
+++|.|++.. ++.. ...+|..+..+. -.++++.+.|+|++.
T Consensus 85 li~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 85 LIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred eeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 9999999743 3322 224666554332 336899999999985
No 433
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.70 E-value=0.17 Score=48.87 Aligned_cols=22 Identities=32% Similarity=0.721 Sum_probs=20.0
Q ss_pred EEEECCCCCChhHHHHHHHhcc
Q 046721 79 VVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 79 VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
|.+.|+||+|||+|++.|....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6789999999999999999874
No 434
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.50 E-value=0.24 Score=47.09 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcccc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTK 102 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~ 102 (1068)
+..+.|+|++|+||||++..|......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 467899999999999999999987543
No 435
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.47 E-value=0.05 Score=64.14 Aligned_cols=87 Identities=17% Similarity=0.274 Sum_probs=53.2
Q ss_pred CeeEEEEeCCCChhH----HHHH-----HHhcCEEEEEEeCCCCCchhH--HHHHHHHHhCCCCcEE--EEEeCCCcCCc
Q 046721 119 KRRLQFVECPNDING----MIDC-----AKFADLALLLIDASHGFEMET--FEFLNLMQNHGLPNVM--GVLTHLDKFTD 185 (1068)
Q Consensus 119 k~rl~fIDtPGdl~s----mld~-----akvADlVLlVIDas~g~e~~t--~eiL~~L~~~GlP~vI--vVLNKiDlvk~ 185 (1068)
..-+++|||.|.++. |-.. +...|.||||=.|--|-+.-. .+|=..|..+..|+.| ++++|+|.+.+
T Consensus 466 gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dtv~d 545 (587)
T KOG0781|consen 466 GFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDTVDD 545 (587)
T ss_pred CCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccchhh
Confidence 457999999995431 2221 245699999988766655432 3555666666655432 58999999863
Q ss_pred HHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 186 KKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 186 ~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
. +-..+ ..-+..+.||+++-
T Consensus 546 ~--vg~~~-------~m~y~~~~pi~fvg 565 (587)
T KOG0781|consen 546 K--VGAAV-------SMVYITGKPILFVG 565 (587)
T ss_pred H--HHHHh-------hheeecCCceEEEe
Confidence 2 22222 22234677888775
No 436
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.26 E-value=0.038 Score=53.83 Aligned_cols=25 Identities=40% Similarity=0.749 Sum_probs=20.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
..+.|.|.+|+|||++++.+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhH
Confidence 5789999999999999999998753
No 437
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.17 E-value=0.14 Score=51.93 Aligned_cols=66 Identities=26% Similarity=0.312 Sum_probs=39.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCC-ChhHHHHHHHhcCEEEEEEeC
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPN-DINGMIDCAKFADLALLLIDA 150 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPG-dl~smld~akvADlVLlVIDa 150 (1068)
++|+|+|+.|+|||||+..|+........ ....+......+. -+|.|| |-..+ ...|+++++..+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~----~v~~ik~~~~g~~-~~d~pG~Dt~r~---~aGA~~~~~~~~~ 67 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGY----RVAVIKHTDHGQF-EIDPPGTDTWRF---KAGADVVLVSSDE 67 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT------EEEEEE-STTST-TCSTTCHHHHHH---HCT-SEEEEECSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCC----ceEEEEEccCCCc-ccCCCCcccccc---cccceEEEEEcCC
Confidence 37899999999999999999987543211 0111222111011 256777 33334 4578888888776
No 438
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.17 E-value=0.035 Score=61.01 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
=+|+|||++|||||||+|.|.|-.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999863
No 439
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.02 E-value=0.24 Score=49.28 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+++|+|++|+|||||+..|....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 36899999999999999998874
No 440
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=94.02 E-value=0.22 Score=50.96 Aligned_cols=138 Identities=18% Similarity=0.198 Sum_probs=78.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhc-cccCCCCceeccEE-----EE-eCCCeeEEEEeCCCCh--hHHHH-HHHhcC
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPVT-----VV-SGKKRRLQFVECPNDI--NGMID-CAKFAD 142 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~It-----i~-~~~k~rl~fIDtPGdl--~smld-~akvAD 142 (1068)
+.-...|+++|-+..|||||+-.-++. +.....++ .| +. +. .+-.-.+.++|..|.- ..|+- +|+.|-
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~-~G-vN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsv 94 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQT-LG-VNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSV 94 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHH-hC-ccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcE
Confidence 344578999999999999987666654 21111111 11 11 11 1234567889999853 33443 568889
Q ss_pred EEEEEEeCCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCC--cHHHHHHHHHHHHHHhcccccCCCeEEEEecc
Q 046721 143 LALLLIDASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFT--DKKKLRKTKQHLKHRFGTELYHGAKLFKLSGL 216 (1068)
Q Consensus 143 lVLlVIDas~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk--~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl 216 (1068)
++||+.|-+...+... .+..+.+.. .-+| |+|-+|.|.+- +.+....+...-+.+. ..-.+.+|+.|+-
T Consensus 95 aIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP--ilvGTKyD~fi~lp~e~Q~~I~~qar~YA---k~mnAsL~F~Sts 169 (205)
T KOG1673|consen 95 AILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP--ILVGTKYDLFIDLPPELQETISRQARKYA---KVMNASLFFCSTS 169 (205)
T ss_pred EEEEEEecCchHHHHHHHHHHHHHhccCCccce--EEeccchHhhhcCCHHHHHHHHHHHHHHH---HHhCCcEEEeecc
Confidence 9999999986543322 133333322 2355 77999999862 2222222222221111 1126788988875
Q ss_pred c
Q 046721 217 I 217 (1068)
Q Consensus 217 ~ 217 (1068)
+
T Consensus 170 ~ 170 (205)
T KOG1673|consen 170 H 170 (205)
T ss_pred c
Confidence 4
No 441
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=93.97 E-value=0.83 Score=51.18 Aligned_cols=65 Identities=8% Similarity=0.163 Sum_probs=48.1
Q ss_pred eEEEEeCCCChh-HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEE--EEEeCCCcCCc
Q 046721 121 RLQFVECPNDIN-GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVM--GVLTHLDKFTD 185 (1068)
Q Consensus 121 rl~fIDtPGdl~-smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vI--vVLNKiDlvk~ 185 (1068)
.++|+|||+.++ .++...-.+|.+|+|....-.--.....++.++..+|.+... +|+|+++...+
T Consensus 114 D~iliD~~aGl~~~~~~~~~~sd~~viVt~pe~~si~~A~~~i~~~~~~~~~~~~~~vV~N~v~~~~e 181 (262)
T COG0455 114 DYILIDTGAGLSRDTLSFILSSDELVIVTTPEPTSITDAYKTIKILSKLGLDLLGRRVVLNRVRSTKE 181 (262)
T ss_pred CEEEEeCCCCccHHHHHHHHhcCcEEEEeCCCcchHHHHHHHHHHHHHcCCccccceEEEEecccccc
Confidence 699999986555 477777778999999876532223456788888889988544 89999985443
No 442
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.97 E-value=0.17 Score=56.17 Aligned_cols=126 Identities=16% Similarity=0.281 Sum_probs=71.8
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhccccCCCCc-eeccEEEE--------eCCCeeEEEEeCCC--C-------hhH
Q 046721 72 GEPPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPE-VRGPVTVV--------SGKKRRLQFVECPN--D-------ING 133 (1068)
Q Consensus 72 ~~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~t-t~~~Iti~--------~~~k~rl~fIDtPG--d-------l~s 133 (1068)
..|--++|..||-+|.||||||..|.+..-...+.+ +...+.+. +.-.-+++++||.| | +..
T Consensus 38 ~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~ 117 (406)
T KOG3859|consen 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKP 117 (406)
T ss_pred hcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccch
Confidence 346678999999999999999999998632111111 11111111 11255789999987 1 111
Q ss_pred HHHHH-----------------------HhcCEEEEEEeCC-CCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHH
Q 046721 134 MIDCA-----------------------KFADLALLLIDAS-HGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKL 189 (1068)
Q Consensus 134 mld~a-----------------------kvADlVLlVIDas-~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l 189 (1068)
++|.+ ....++|+.|..+ +++..-+.-++.-|. ..+ ++|.|+-|.|.+.. ..+
T Consensus 118 iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skV-NIIPvIAKaDtisK-~eL 194 (406)
T KOG3859|consen 118 IVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKV-NIIPVIAKADTISK-EEL 194 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhh-hhHHHHHHhhhhhH-HHH
Confidence 22211 2347888888775 344333333333332 122 37778889998863 456
Q ss_pred HHHHHHHHHHh
Q 046721 190 RKTKQHLKHRF 200 (1068)
Q Consensus 190 ~~vkk~Lk~~~ 200 (1068)
...+..+.+.+
T Consensus 195 ~~FK~kimsEL 205 (406)
T KOG3859|consen 195 KRFKIKIMSEL 205 (406)
T ss_pred HHHHHHHHHHH
Confidence 65555544433
No 443
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.19 Score=60.47 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.|||+|++|||||||++.|++.+
T Consensus 366 kvAIlG~SGsGKSTllqLl~~~~ 388 (573)
T COG4987 366 KVAILGRSGSGKSTLLQLLAGAW 388 (573)
T ss_pred eEEEECCCCCCHHHHHHHHHhcc
Confidence 59999999999999999999865
No 444
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=93.81 E-value=0.23 Score=53.33 Aligned_cols=64 Identities=8% Similarity=-0.011 Sum_probs=39.1
Q ss_pred CeeEEEEeCCCChh--HHHHHHH--hcCEEEEEEeCCCCCchhHHHHHHHHHhC----CCCcEEEEEeCCCc
Q 046721 119 KRRLQFVECPNDIN--GMIDCAK--FADLALLLIDASHGFEMETFEFLNLMQNH----GLPNVMGVLTHLDK 182 (1068)
Q Consensus 119 k~rl~fIDtPGdl~--smld~ak--vADlVLlVIDas~g~e~~t~eiL~~L~~~----GlP~vIvVLNKiDl 182 (1068)
...+++|||+|.+. .++..+. .||.+|+++..+.---.....+++.+... +.+...+|+|+++.
T Consensus 116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred CCCEEEEecCCCceecccccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 35789999998653 3333334 89999999987531111223444444432 44444578999874
No 445
>KOG2484 consensus GTPase [General function prediction only]
Probab=93.80 E-value=0.2 Score=58.21 Aligned_cols=65 Identities=20% Similarity=0.259 Sum_probs=48.2
Q ss_pred HHHHHHhcCEEEEEEeCCCCCchhHHHHHHH-HHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHH
Q 046721 134 MIDCAKFADLALLLIDASHGFEMETFEFLNL-MQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHR 199 (1068)
Q Consensus 134 mld~akvADlVLlVIDas~g~e~~t~eiL~~-L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~ 199 (1068)
+...+..+|+||-|+||..+...-..++=.+ ++++|-.+.|+||||+|++. .+.+.+-+..|+..
T Consensus 140 ~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVP-rEv~e~Wl~YLr~~ 205 (435)
T KOG2484|consen 140 FRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVP-REVVEKWLVYLRRE 205 (435)
T ss_pred HHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCC-HHHHHHHHHHHHhh
Confidence 5566788999999999998765444444443 35788677999999999997 45666666666555
No 446
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.43 E-value=0.4 Score=46.18 Aligned_cols=27 Identities=30% Similarity=0.652 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
....|.|+|++|+|||+|++.+.....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 345788999999999999999998754
No 447
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.37 E-value=0.19 Score=44.47 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.8
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+|+|.|.+++||||+.+.|....
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 448
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=93.35 E-value=0.8 Score=50.30 Aligned_cols=62 Identities=8% Similarity=-0.041 Sum_probs=40.6
Q ss_pred CeeEEEEeCCCChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHH------hCCCCcEEEEEeCCC
Q 046721 119 KRRLQFVECPNDING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQ------NHGLPNVMGVLTHLD 181 (1068)
Q Consensus 119 k~rl~fIDtPGdl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~------~~GlP~vIvVLNKiD 181 (1068)
...++||||||.+.. +..++..||+||..+.++.---.....++..+. ..+++ ..+|+|.++
T Consensus 83 ~yD~iiID~pp~~~~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~-~~iv~~~~~ 151 (231)
T PRK13849 83 GFDYALADTHGGSSELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIP-TAILRQRVP 151 (231)
T ss_pred CCCEEEEeCCCCccHHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEEEecc
Confidence 468999999997776 556779999999888775321112223332221 24677 457999886
No 449
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.22 E-value=0.3 Score=64.32 Aligned_cols=133 Identities=18% Similarity=0.217 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhccCCcccccCCCCCCeEEEEECCCCCChhHHHHHHHhccc--c-CCCCceeccEEEEe--CCCeeEEE
Q 046721 50 SMMRTAEKEQRRLHIPTIDRSYGEPPPYVVVVQGPPQVGKSLLIKCLIKHYT--K-LKVPEVRGPVTVVS--GKKRRLQF 124 (1068)
Q Consensus 50 ~~rr~~~k~~kr~~v~~~~R~~~~~pP~~VaVVG~pnvGKSTLIn~L~~~~~--~-~~~~tt~~~Iti~~--~~k~rl~f 124 (1068)
.+.....+..++.+.....|.....-|=. .|||+||+||||++...--... . .......++.|..+ .....-++
T Consensus 100 ~~~~e~~~~l~r~~~~~~~rr~lyeLPWy-~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVl 178 (1188)
T COG3523 100 AQLGEALRTLKRRKRGRPGRRYLYELPWY-MVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVL 178 (1188)
T ss_pred HHHHHHHHHHHHHHhcCcccchhhcCCce-EEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccccceEE
Confidence 33334444444433322234333444533 5899999999997754333211 0 00111111113222 34668899
Q ss_pred EeCCCCh--------------hHHHHHH------HhcCEEEEEEeCCCCCchhHH---HHHHHHHh----------CCCC
Q 046721 125 VECPNDI--------------NGMIDCA------KFADLALLLIDASHGFEMETF---EFLNLMQN----------HGLP 171 (1068)
Q Consensus 125 IDtPGdl--------------~smld~a------kvADlVLlVIDas~g~e~~t~---eiL~~L~~----------~GlP 171 (1068)
|||.|.+ ...++.+ .-.|.||+-+|+++-.+.... .++.+|.. .-+|
T Consensus 179 IDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~P 258 (1188)
T COG3523 179 IDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLP 258 (1188)
T ss_pred EcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 9998821 1233333 456999999999754332222 22222222 2457
Q ss_pred cEEEEEeCCCcCC
Q 046721 172 NVMGVLTHLDKFT 184 (1068)
Q Consensus 172 ~vIvVLNKiDlvk 184 (1068)
|.+++||+|++.
T Consensus 259 -VYl~lTk~Dll~ 270 (1188)
T COG3523 259 -VYLVLTKADLLP 270 (1188)
T ss_pred -eEEEEecccccc
Confidence 899999999986
No 450
>PRK08727 hypothetical protein; Validated
Probab=93.18 E-value=0.63 Score=50.96 Aligned_cols=122 Identities=15% Similarity=0.199 Sum_probs=65.9
Q ss_pred EEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCC---CChhHHHHHHHhcCEEEEEEeCCCCC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECP---NDINGMIDCAKFADLALLLIDASHGF 154 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtP---Gdl~smld~akvADlVLlVIDas~g~ 154 (1068)
.|.+.|++|+|||.|+.++........ .+..++.+. +.+...++.+..+| +++||=-+.+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~---------------~~~~y~~~~~~~~~~~~~~~~l~~~d--lLiIDDi~~l 105 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAG---------------RSSAYLPLQAAAGRLRDALEALEGRS--LVALDGLESI 105 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC---------------CcEEEEeHHHhhhhHHHHHHHHhcCC--EEEEeCcccc
Confidence 389999999999999999987643211 122333222 23344566666666 4566643322
Q ss_pred c---hh---HHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcc
Q 046721 155 E---ME---TFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGN 228 (1068)
Q Consensus 155 e---~~---t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~n 228 (1068)
. .. -+.+++.+...|.+ +|+..|. ....+......|.+++ ....++.+... ..++...
T Consensus 106 ~~~~~~~~~lf~l~n~~~~~~~~-vI~ts~~-----~p~~l~~~~~dL~SRl-----~~~~~~~l~~~-----~~e~~~~ 169 (233)
T PRK08727 106 AGQREDEVALFDFHNRARAAGIT-LLYTARQ-----MPDGLALVLPDLRSRL-----AQCIRIGLPVL-----DDVARAA 169 (233)
T ss_pred cCChHHHHHHHHHHHHHHHcCCe-EEEECCC-----ChhhhhhhhHHHHHHH-----hcCceEEecCC-----CHHHHHH
Confidence 1 11 22455555556655 5655553 2344545555666665 23345666543 3344444
Q ss_pred hHHH
Q 046721 229 LAEF 232 (1068)
Q Consensus 229 LlR~ 232 (1068)
+++.
T Consensus 170 iL~~ 173 (233)
T PRK08727 170 VLRE 173 (233)
T ss_pred HHHH
Confidence 4443
No 451
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.10 E-value=0.51 Score=50.39 Aligned_cols=25 Identities=32% Similarity=0.479 Sum_probs=22.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
..|+|+|++|+||||++++|++...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3689999999999999999988753
No 452
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.10 E-value=0.072 Score=57.56 Aligned_cols=23 Identities=48% Similarity=0.742 Sum_probs=20.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
-+|+|||++|+|||||+++|.+-
T Consensus 29 evv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999874
No 453
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.09 E-value=0.49 Score=60.57 Aligned_cols=63 Identities=14% Similarity=-0.052 Sum_probs=45.3
Q ss_pred eeEEEEeCCCChh--HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCc
Q 046721 120 RRLQFVECPNDIN--GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDK 182 (1068)
Q Consensus 120 ~rl~fIDtPGdl~--smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDl 182 (1068)
..+++||||..+. .+.-.+..||.+|+|+.....-.....+.+..+...|.+.+-+|+|++|.
T Consensus 656 yD~IiID~pp~~~~~d~~~l~~~~D~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~~ 720 (754)
T TIGR01005 656 SDCVVVDVGTADPVRDMRAAARLAIIMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLDP 720 (754)
T ss_pred CCEEEEcCCCcchhHHHHHhhhhCCeEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCCh
Confidence 4689999987544 35555678999999987654333445577777877787755688999874
No 454
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=92.97 E-value=0.36 Score=58.47 Aligned_cols=103 Identities=25% Similarity=0.351 Sum_probs=62.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEEE----EeCCCeeEEEEeCCC---ChhHHHHHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVTV----VSGKKRRLQFVECPN---DINGMIDCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~Iti----~~~~k~rl~fIDtPG---dl~smld~akvADlVLlV 147 (1068)
-...-|+|+.++|||.|++++++.. ......++...+++ +.+...-+++-|.+- ++..--+ ..||+++||
T Consensus 425 Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~~~l~~ke--~~cDv~~~~ 502 (625)
T KOG1707|consen 425 VFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGEDDQDFLTSKE--AACDVACLV 502 (625)
T ss_pred eeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCccccccccCcc--ceeeeEEEe
Confidence 3567899999999999999999963 22222222222322 123334455555542 2222122 779999999
Q ss_pred EeCCCCCchhHHHHHHHHHh-----CCCCcEEEEEeCCCcCC
Q 046721 148 IDASHGFEMETFEFLNLMQN-----HGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 148 IDas~g~e~~t~eiL~~L~~-----~GlP~vIvVLNKiDlvk 184 (1068)
.|.+.+ ..+.++..+.. +.+| ++.|.+|+|+-.
T Consensus 503 YDsS~p---~sf~~~a~v~~~~~~~~~~P-c~~va~K~dlDe 540 (625)
T KOG1707|consen 503 YDSSNP---RSFEYLAEVYNKYFDLYKIP-CLMVATKADLDE 540 (625)
T ss_pred cccCCc---hHHHHHHHHHHHhhhccCCc-eEEEeeccccch
Confidence 999832 33333333222 4678 788999999864
No 455
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.97 E-value=0.13 Score=58.16 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
.+.+|+|+|++|+||||++..|...+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999987653
No 456
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.91 E-value=0.25 Score=52.22 Aligned_cols=134 Identities=13% Similarity=0.212 Sum_probs=76.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHh-ccccCCCCce---eccEEEEeCC-CeeEEEEeCCC--ChhHHHHHH-HhcCEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIK-HYTKLKVPEV---RGPVTVVSGK-KRRLQFVECPN--DINGMIDCA-KFADLAL 145 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~-~~~~~~~~tt---~~~Iti~~~~-k~rl~fIDtPG--dl~smld~a-kvADlVL 145 (1068)
.+-+.++++|-.+.||||++++.+. .+......++ ..+....... ..++..+||.| -+...-|.. =.+-.++
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 4567888899999999998877654 4443333332 2222222222 47888899987 222233322 1234567
Q ss_pred EEEeCCCCCc-----hhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 146 LLIDASHGFE-----METFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 146 lVIDas~g~e-----~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
+++|....++ .....+++.++ ++| ++++-||+|.-.. +.-.+.+.. ..-.....+.+||+.+
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~--NiP-iv~cGNKvDi~~r-~~k~k~v~~-------~rkknl~y~~iSaksn 154 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRE--NIP-IVLCGNKVDIKAR-KVKAKPVSF-------HRKKNLQYYEISAKSN 154 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhc--CCC-eeeeccceecccc-cccccccee-------eecccceeEEeecccc
Confidence 7788764433 23335555554 478 8899999997542 100111110 0113566788898765
No 457
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=92.76 E-value=0.12 Score=61.86 Aligned_cols=72 Identities=17% Similarity=0.247 Sum_probs=47.5
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc-----c-cCCCCceeccEEEEeCC--CeeEEEEeCCC----------Chh--HH
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY-----T-KLKVPEVRGPVTVVSGK--KRRLQFVECPN----------DIN--GM 134 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~-----~-~~~~~tt~~~Iti~~~~--k~rl~fIDtPG----------dl~--sm 134 (1068)
.-++|+|+|+-.+|||||+|.|.+.. . ...-+||+| |-+.... .--+..+|.-| +|. +.
T Consensus 36 ~YhVVavmG~QSSGKSTLLN~LFgTnF~~MDA~~gRqQTTKG-IWlar~~~i~p~i~vmDvEGTDGrERGEDqdFErksA 114 (772)
T KOG2203|consen 36 SYHVVAVMGSQSSGKSTLLNHLFGTNFREMDAFKGRQQTTKG-IWLARCAGIEPCILVMDVEGTDGRERGEDQDFERKSA 114 (772)
T ss_pred ceeEEEEecCcccchHHHHHHHhccChHHHHhhhccccccch-hhHHhhcCCCCceEEEecccCCcccccccccHHHHhH
Confidence 35899999999999999999999962 1 123455554 3322222 22355668765 344 46
Q ss_pred HHHHHhcCEEEEE
Q 046721 135 IDCAKFADLALLL 147 (1068)
Q Consensus 135 ld~akvADlVLlV 147 (1068)
|=++.++|+||+=
T Consensus 115 LFaiavSevvivN 127 (772)
T KOG2203|consen 115 LFAIAVSEVVIVN 127 (772)
T ss_pred HHHHhhhheehhh
Confidence 7778889988763
No 458
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.75 E-value=0.44 Score=60.37 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
-.|||||.+|+|||||++.|+|-+.
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3699999999999999999999764
No 459
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.64 E-value=0.087 Score=50.77 Aligned_cols=23 Identities=43% Similarity=0.751 Sum_probs=21.1
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+|+|+|+|++||||+.+.|...+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998874
No 460
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=92.60 E-value=0.058 Score=62.56 Aligned_cols=111 Identities=25% Similarity=0.259 Sum_probs=75.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc------------------------cc--CCCCceeccEEEEe--C----CCee
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY------------------------TK--LKVPEVRGPVTVVS--G----KKRR 121 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~------------------------~~--~~~~tt~~~Iti~~--~----~k~r 121 (1068)
.+.+.|+|+|+..+||||+.-...+.. +. ......++ |+|.. . .+.-
T Consensus 5 ~~~~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~-i~I~~~l~~~~t~k~~ 83 (391)
T KOG0052|consen 5 KIHINIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERG-ITIDIALWKFETSKYY 83 (391)
T ss_pred ccccceEEEEeeeeeeeEEEeeecccccchhhhhhchHHHhhccceeeeeeeechhhhccccc-eEEEEEeecccceeEE
Confidence 456789999999999998544322211 00 11112233 55432 1 3667
Q ss_pred EEEEeCCC--Chh-HHHHHHHhcCEEEEEEeCCC-CCc------hhHHHHHHHHHhCCCCcEEEEEeCCCcCCc
Q 046721 122 LQFVECPN--DIN-GMIDCAKFADLALLLIDASH-GFE------METFEFLNLMQNHGLPNVMGVLTHLDKFTD 185 (1068)
Q Consensus 122 l~fIDtPG--dl~-smld~akvADlVLlVIDas~-g~e------~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~ 185 (1068)
++++|+|| ++. .|+.....||..+++|.+.. +|+ .++.++..+....|+..+++.+||+|...+
T Consensus 84 i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~ 157 (391)
T KOG0052|consen 84 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 157 (391)
T ss_pred EEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCC
Confidence 89999999 333 47888899999999998843 232 366777777777888889999999998753
No 461
>PRK01889 GTPase RsgA; Reviewed
Probab=92.57 E-value=0.12 Score=60.15 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+++|+|.+|+|||||+|.|++..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 589999999999999999999863
No 462
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.55 E-value=0.085 Score=52.03 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
-+++|+|++|+|||||++.|.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 4799999999999999999999853
No 463
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.45 E-value=0.11 Score=55.61 Aligned_cols=27 Identities=15% Similarity=0.353 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
++..+|+|+|++|+|||||+++|.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 446789999999999999999999864
No 464
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.39 E-value=0.12 Score=55.23 Aligned_cols=27 Identities=15% Similarity=0.362 Sum_probs=24.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
..|.+|+|+|++|+|||||++.|.+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999999875
No 465
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.36 E-value=0.14 Score=54.17 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=24.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+|.+|+|+|++|+|||||++.|+...
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 357899999999999999999999874
No 466
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.28 E-value=0.94 Score=51.00 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=22.8
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
..++|+|++++|||||++.|++...
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 6899999999999999999998753
No 467
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.24 E-value=0.1 Score=58.01 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
--+++|+|++|||||||+++|.+-
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999985
No 468
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.24 E-value=0.11 Score=56.84 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
+|||+|++|+|||||+|.|-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7999999999999999988765
No 469
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=92.22 E-value=0.11 Score=54.88 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+--+|||+|++|+|||||+|.+.|-.
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhcc
Confidence 34589999999999999999999864
No 470
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=92.16 E-value=0.74 Score=52.31 Aligned_cols=77 Identities=22% Similarity=0.331 Sum_probs=48.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeC-CC-ChhHHHHHHHh---cCEEEEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVEC-PN-DINGMIDCAKF---ADLALLLI 148 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDt-PG-dl~smld~akv---ADlVLlVI 148 (1068)
.++.+|+|.|++|+||||+++.|-.. | +.++|- |- .+..+++.+.. .+-+.+++
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~~~----------g-----------~~~~d~~~~~L~~~l~~~~~~~~~~~~~av~i 62 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALEDL----------G-----------YYCVDNLPPSLLPKLVELLAQSGGIRKVAVVI 62 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHc----------C-----------CeEECCcCHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 34568999999999999999998411 1 122332 22 23446555543 36678888
Q ss_pred eCCCC-CchhHHHHHHHHHhCCCC
Q 046721 149 DASHG-FEMETFEFLNLMQNHGLP 171 (1068)
Q Consensus 149 Das~g-~e~~t~eiL~~L~~~GlP 171 (1068)
|.... +.....+.+..|...|.+
T Consensus 63 D~r~~~~~~~~~~~~~~L~~~g~~ 86 (288)
T PRK05416 63 DVRSRPFFDDLPEALDELRERGID 86 (288)
T ss_pred ccCchhhHHHHHHHHHHHHHcCCc
Confidence 88532 322344677777777876
No 471
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=92.16 E-value=0.49 Score=52.31 Aligned_cols=89 Identities=27% Similarity=0.377 Sum_probs=60.2
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCC----ChhHHHHHHH--hcCEEEE
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPN----DINGMIDCAK--FADLALL 146 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPG----dl~smld~ak--vADlVLl 146 (1068)
..|...|.+.|..|+|||||+++|+..+.... +-+|..+. ++..+++.+. -.-+|||
T Consensus 49 G~pannvLL~G~rGtGKSSlVkall~~y~~~G-----------------LRlIev~k~~L~~l~~l~~~l~~~~~kFIlf 111 (249)
T PF05673_consen 49 GLPANNVLLWGARGTGKSSLVKALLNEYADQG-----------------LRLIEVSKEDLGDLPELLDLLRDRPYKFILF 111 (249)
T ss_pred CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC-----------------ceEEEECHHHhccHHHHHHHHhcCCCCEEEE
Confidence 35677899999999999999999998865321 33444432 4555666654 3468888
Q ss_pred EEeCCCCCchhHHHHHHHHHhCCC---C-cEEEEEe
Q 046721 147 LIDASHGFEMETFEFLNLMQNHGL---P-NVMGVLT 178 (1068)
Q Consensus 147 VIDas~g~e~~t~eiL~~L~~~Gl---P-~vIvVLN 178 (1068)
+=|-++.-.+.....|..+..-|+ | +|++.+|
T Consensus 112 ~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyAT 147 (249)
T PF05673_consen 112 CDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYAT 147 (249)
T ss_pred ecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEe
Confidence 888776666666777776665443 4 5665554
No 472
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=92.11 E-value=0.38 Score=58.82 Aligned_cols=86 Identities=19% Similarity=0.246 Sum_probs=52.9
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCChhHHHHHHH--hcCEEEEEEeC
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPNDINGMIDCAK--FADLALLLIDA 150 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGdl~smld~ak--vADlVLlVIDa 150 (1068)
...|.+|+++|+||+||||+.+.+..... ..+++. |.-|....++..+. .+..-=+|||+
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g----------~~~vn~--------D~lg~~~~~~~~a~~~L~~G~sVVIDa 427 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAG----------YKHVNA--------DTLGSTQNCLTACERALDQGKRCAIDN 427 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcC----------CeEECc--------HHHHHHHHHHHHHHHHHhCCCcEEEEC
Confidence 46789999999999999999999887521 111111 11122222333221 12223356799
Q ss_pred CCCCchhHHHHHHHHHhCCCCcEEEEE
Q 046721 151 SHGFEMETFEFLNLMQNHGLPNVMGVL 177 (1068)
Q Consensus 151 s~g~e~~t~eiL~~L~~~GlP~vIvVL 177 (1068)
+..-..+-..++.++..+|+| +.+++
T Consensus 428 Tn~~~~~R~~~i~lAk~~gv~-v~~i~ 453 (526)
T TIGR01663 428 TNPDAASRAKFLQCARAAGIP-CRCFL 453 (526)
T ss_pred CCCCHHHHHHHHHHHHHcCCe-EEEEE
Confidence 875555556788899999998 44444
No 473
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.09 E-value=0.13 Score=54.19 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+.+|+|+|++|+|||||+++|+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 35689999999999999999999764
No 474
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=92.08 E-value=0.14 Score=55.78 Aligned_cols=29 Identities=31% Similarity=0.414 Sum_probs=25.7
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccc
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
.++|.+|+|+|++|+|||||++.|.+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46789999999999999999999998743
No 475
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.07 E-value=0.2 Score=54.20 Aligned_cols=28 Identities=36% Similarity=0.642 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
+.-.+.|+|||+|||||||+++|..-..
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNRmnd 58 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNRMND 58 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHhhcc
Confidence 4456899999999999999999987643
No 476
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=92.02 E-value=1.8 Score=48.33 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=35.0
Q ss_pred eeEEEEeCCCCh--hHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEE
Q 046721 120 RRLQFVECPNDI--NGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGV 176 (1068)
Q Consensus 120 ~rl~fIDtPGdl--~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvV 176 (1068)
..++|||||-.+ ....-.+..||.+|+|+.+...-.......+..|...|.+ ++++
T Consensus 213 yD~ViiD~pp~~~~~d~~~~~~~~d~vilV~~~~~t~~~~~~~~~~~l~~~~~~-~~G~ 270 (274)
T TIGR03029 213 YDVVIVDTPSAEHSSDAQIVATRARGTLIVSRVNETRLHELTSLKEHLSGVGVR-VVGA 270 (274)
T ss_pred CCEEEEeCCCcccccHHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCC-EEEE
Confidence 357888886422 2244456778888888876554444455677777777777 4443
No 477
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.00 E-value=0.58 Score=51.54 Aligned_cols=83 Identities=18% Similarity=0.197 Sum_probs=53.2
Q ss_pred EEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEE------------eCCCeeEEEEeCCCChhH---HHHHHHhcC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVV------------SGKKRRLQFVECPNDING---MIDCAKFAD 142 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~------------~~~k~rl~fIDtPGdl~s---mld~akvAD 142 (1068)
.++|||.+|+|||||.+.|.|-... +.|.|++. ....-+++|=|+.++++. +-+.+..+=
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl~~p-----~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl 109 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGLEKP-----SSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPL 109 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhcccCC-----CCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhh
Confidence 7899999999999999999986321 12223321 123456777799887763 333322220
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHhCCCCc
Q 046721 143 LALLLIDASHGFEMETFEFLNLMQNHGLPN 172 (1068)
Q Consensus 143 lVLlVIDas~g~e~~t~eiL~~L~~~GlP~ 172 (1068)
-+ .++.....++..+|...|+|.
T Consensus 110 ~~-------~~~~~~~~~i~~~L~~VgL~~ 132 (252)
T COG1124 110 RP-------HGLSKSQQRIAELLDQVGLPP 132 (252)
T ss_pred cc-------CCccHHHHHHHHHHHHcCCCH
Confidence 00 566666666888888889985
No 478
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=91.82 E-value=1.3 Score=56.48 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=45.6
Q ss_pred eeEEEEeCCCChh--HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCc
Q 046721 120 RRLQFVECPNDIN--GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDK 182 (1068)
Q Consensus 120 ~rl~fIDtPGdl~--smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDl 182 (1068)
..+++||||..+. ...-.+..||.+|+|+.....-.......++.|...|.+.+=+|+|+++.
T Consensus 641 yD~IIIDtPP~~~~~Da~~la~~ad~~llVvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~~~ 705 (726)
T PRK09841 641 YDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIK 705 (726)
T ss_pred CCEEEEeCCCccccchHHHHHHhCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCceEEEEEeCccc
Confidence 4689999986433 35555788999999987654444455677888888888855678899874
No 479
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=91.63 E-value=0.29 Score=50.45 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=20.7
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+|+|+|++|+|||||+++|+...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999864
No 480
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=91.62 E-value=0.66 Score=49.31 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=47.9
Q ss_pred eeEEEEeCCC--ChhHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcC
Q 046721 120 RRLQFVECPN--DINGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKF 183 (1068)
Q Consensus 120 ~rl~fIDtPG--dl~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlv 183 (1068)
..++|||||. ......-.++.||.+|+|+++...-.......+..++..|.+.+-+|+|+++..
T Consensus 128 yD~ViiD~pp~~~~~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 128 FDYIIIDTPPIGTVTDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred CCEEEEeCCCccccchHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 4689999985 222233356789999999999765555666788888888988677799998864
No 481
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=91.58 E-value=1 Score=52.90 Aligned_cols=27 Identities=37% Similarity=0.407 Sum_probs=22.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhc
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
...+.+|+|||+.++|||||.+-|++.
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHH
Confidence 356789999999999999977666653
No 482
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.58 E-value=0.14 Score=56.05 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
=.|||||++|+|||||+++|.+-
T Consensus 31 E~VaiIG~SGaGKSTLLR~lngl 53 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNGL 53 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhcc
Confidence 37999999999999999999984
No 483
>PRK11519 tyrosine kinase; Provisional
Probab=91.56 E-value=1.6 Score=55.73 Aligned_cols=63 Identities=13% Similarity=0.156 Sum_probs=46.0
Q ss_pred eeEEEEeCCCCh--hHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCc
Q 046721 120 RRLQFVECPNDI--NGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDK 182 (1068)
Q Consensus 120 ~rl~fIDtPGdl--~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDl 182 (1068)
..++|||||--+ ....-.+..||.+|+|+-....-.......+..+...|.+.+=+|+|+++.
T Consensus 636 yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~v~~ 700 (719)
T PRK11519 636 YDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFR 700 (719)
T ss_pred CCEEEEeCCCcccchHHHHHHHHCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 468999998633 335556789999999998765444445577788888899855578999863
No 484
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=91.54 E-value=0.83 Score=49.68 Aligned_cols=64 Identities=13% Similarity=0.213 Sum_probs=46.5
Q ss_pred CeeEEEEeCCCChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCc
Q 046721 119 KRRLQFVECPNDING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDK 182 (1068)
Q Consensus 119 k~rl~fIDtPGdl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDl 182 (1068)
...+++||||+.+.. +..++..||.||+|++++..--.....++..+...+++.+.+|+|+++.
T Consensus 108 ~yD~VIiD~p~~~~~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 108 DTDFLLIDAPAGLERDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTR 172 (251)
T ss_pred hCCEEEEeCCCccCHHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCc
Confidence 357999999886664 6667788999999999864322233445555666788766789999875
No 485
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=91.53 E-value=0.16 Score=57.62 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
..|.+|+|+|++|||||||++.|.+-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999998887653
No 486
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=91.44 E-value=0.91 Score=45.63 Aligned_cols=23 Identities=43% Similarity=0.859 Sum_probs=20.8
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.|+|+|++|+|||||++.|...+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999874
No 487
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=91.39 E-value=0.15 Score=56.65 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
.-+++|||++|+|||||+++|+|-
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999995
No 488
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.39 E-value=0.15 Score=50.57 Aligned_cols=23 Identities=43% Similarity=0.712 Sum_probs=20.5
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+|.++|+|++|||||++.|....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 58899999999999999998653
No 489
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=91.32 E-value=0.7 Score=59.01 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=69.0
Q ss_pred ECCCCCChhHHHHHHHhcc--c---cCCCCceeccEEEEeC-----CCeeEEEEeCCC----------Chh--HHHHHHH
Q 046721 82 QGPPQVGKSLLIKCLIKHY--T---KLKVPEVRGPVTVVSG-----KKRRLQFVECPN----------DIN--GMIDCAK 139 (1068)
Q Consensus 82 VG~pnvGKSTLIn~L~~~~--~---~~~~~tt~~~Iti~~~-----~k~rl~fIDtPG----------dl~--smld~ak 139 (1068)
+|+-++|||||+|.|.|.. + ...-+||+| |.+... ....+.++|+-| +|. +.+=++.
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~g-i~~~~~~~~~~~~~~~~v~d~eg~d~~er~~~~~fe~~~alf~la 79 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKG-IWMAKAKEVESSESNILVLDVEGTDGRERGEDQDFERKSALFALA 79 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCccccccccccccchh-hHHHhccccccCCCceEEEeCCCCCchhhccccchHHHHHHHHHH
Confidence 4888999999999999972 1 123345554 332111 135778889977 333 2555678
Q ss_pred hcCEEEEEEeC---------CCCCchhHHH-HHHHHH----hCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccc
Q 046721 140 FADLALLLIDA---------SHGFEMETFE-FLNLMQ----NHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTEL 204 (1068)
Q Consensus 140 vADlVLlVIDa---------s~g~e~~t~e-iL~~L~----~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~ 204 (1068)
+||++|+=|=. +.|+-..-++ .|.+.. ....+.+++|+-..+...+-+.+...+..=-..+|..+
T Consensus 80 ~s~~~iiN~w~~~iG~~~~an~~lLktvfevnl~lf~~~~~~~~k~~llfviRD~~~~tp~e~l~~~l~~dl~~iW~~i 158 (742)
T PF05879_consen 80 VSDVLIINMWEHDIGRYQGANMGLLKTVFEVNLQLFGKSKSNDRKTLLLFVIRDHTGVTPLENLEETLREDLEKIWDSI 158 (742)
T ss_pred hhhheeeehhhhhhhhhcccchHHHHHHHHHHHHHHhhcccCCCCceEEEEEeeCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 89988775521 1122122233 233332 12334577788777765555555544433334567765
No 490
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.26 E-value=1.6 Score=51.82 Aligned_cols=133 Identities=18% Similarity=0.218 Sum_probs=84.2
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEE--eC--CCChhHHHHHHHhcCEEEEEE
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFV--EC--PNDINGMIDCAKFADLALLLI 148 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fI--Dt--PGdl~smld~akvADlVLlVI 148 (1068)
..+|.+|.+||+-|+||||.+-.|...+... +.++.++ || |+.+..+-..+..+++-+|-.
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~---------------~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~ 161 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKK---------------GKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS 161 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHc---------------CCceEEEecccCChHHHHHHHHHHHHcCCceecC
Confidence 4679999999999999999888887765321 1223333 55 667777777778888888876
Q ss_pred eCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCc---HHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchh
Q 046721 149 DASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTD---KKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKD 225 (1068)
Q Consensus 149 Das~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~---~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~e 225 (1068)
+....+-.-...-+..++..+.. +|+| |.... .+.+-.-...+ ....-|..-++.++|++| ++
T Consensus 162 ~~~~~Pv~Iak~al~~ak~~~~D-vvIv----DTAGRl~ide~Lm~El~~I----k~~~~P~E~llVvDam~G-----Qd 227 (451)
T COG0541 162 GTEKDPVEIAKAALEKAKEEGYD-VVIV----DTAGRLHIDEELMDELKEI----KEVINPDETLLVVDAMIG-----QD 227 (451)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC-EEEE----eCCCcccccHHHHHHHHHH----HhhcCCCeEEEEEecccc-----hH
Confidence 43332222344667777778877 4433 43321 12222222222 334467888999999966 78
Q ss_pred hcchHHHHH
Q 046721 226 IGNLAEFIS 234 (1068)
Q Consensus 226 i~nLlR~I~ 234 (1068)
+.|..+.+.
T Consensus 228 A~~~A~aF~ 236 (451)
T COG0541 228 AVNTAKAFN 236 (451)
T ss_pred HHHHHHHHh
Confidence 888776663
No 491
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=91.10 E-value=0.52 Score=56.12 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=21.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
++|+|+|.+|+||||||..|+..
T Consensus 2 kVi~IvG~sgSGKTTLiekLI~~ 24 (452)
T PRK14495 2 RVYGIIGWKDAGKTGLVERLVAA 24 (452)
T ss_pred cEEEEEecCCCCHHHHHHHHHHH
Confidence 48999999999999999999875
No 492
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.06 E-value=0.83 Score=47.76 Aligned_cols=23 Identities=39% Similarity=0.769 Sum_probs=19.4
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.|.|-|.|++|||||++.++...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 47889999999999999998765
No 493
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=91.05 E-value=2 Score=48.91 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=29.2
Q ss_pred HHHHHHHhccCCcccccCCCCCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 54 TAEKEQRRLHIPTIDRSYGEPPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 54 ~~~k~~kr~~v~~~~R~~~~~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+++-+.-.+.|...| ++.+.|||.+|.|||++++.+....
T Consensus 45 ~L~~L~~Ll~~P~~~R------mp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHR------MPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred HHHHHHHHHhCCcccC------CCceEEecCCCCcHHHHHHHHHHHC
Confidence 3333333344455444 5678999999999999999998865
No 494
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.04 E-value=0.17 Score=53.92 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+--+++|+|++|+|||||++.|.+..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999874
No 495
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.03 E-value=0.17 Score=55.04 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=22.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.|-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999874
No 496
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.02 E-value=1.6 Score=46.37 Aligned_cols=60 Identities=20% Similarity=0.278 Sum_probs=37.8
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEE-----------eCCCeeEEEEeCCCChhHHHHHHHhc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVV-----------SGKKRRLQFVECPNDINGMIDCAKFA 141 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~-----------~~~k~rl~fIDtPGdl~smld~akvA 141 (1068)
-.+||||..|+|||||.+.|.|-... |.|.|.+- ..+.-|.+|-|+.-.|+.-+..-...
T Consensus 40 QTlaiIG~NGSGKSTLakMlaGmi~P-----TsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiL 110 (267)
T COG4167 40 QTLAIIGENGSGKSTLAKMLAGMIEP-----TSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQIL 110 (267)
T ss_pred cEEEEEccCCCcHhHHHHHHhcccCC-----CCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHh
Confidence 47899999999999999999987421 12323221 11345777778765555444433333
No 497
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=90.95 E-value=0.18 Score=54.15 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
--+++|+|++|+|||||++.|.|-.
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3589999999999999999999874
No 498
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=90.88 E-value=0.18 Score=52.95 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
--+++|+|++|+|||||++.|.+-.
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999999874
No 499
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=90.88 E-value=0.36 Score=53.18 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=20.3
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+|.++|+||+||||+.+.|....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998764
No 500
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=90.88 E-value=0.53 Score=49.25 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=44.5
Q ss_pred EEEEECCCCCChhHHHHHHHhccccC--CCCcee-------ccEE-EEeCCCeeEEEEeCCCChhHHHHH-HHhcCEEEE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKL--KVPEVR-------GPVT-VVSGKKRRLQFVECPNDINGMIDC-AKFADLALL 146 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~--~~~tt~-------~~It-i~~~~k~rl~fIDtPGdl~smld~-akvADlVLl 146 (1068)
+|.|+|.+++||||+...|....... .+.|.. ..|. ........+..+++|.++...+.. ....+ ++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~--~V 80 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGR--CV 80 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCC--EE
Confidence 58999999999999999987653211 111100 0111 011124578889999998887655 23333 57
Q ss_pred EEeCCC
Q 046721 147 LIDASH 152 (1068)
Q Consensus 147 VIDas~ 152 (1068)
|||+-.
T Consensus 81 lID~Lt 86 (170)
T PRK05800 81 LVDCLT 86 (170)
T ss_pred EehhHH
Confidence 778743
Done!