Query 046721
Match_columns 1068
No_of_seqs 415 out of 3227
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 06:08:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046721.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046721hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wb1_A Translation elongation 100.0 8.2E-34 2.8E-38 335.6 24.0 203 75-295 18-236 (482)
2 3iev_A GTP-binding protein ERA 99.8 1.6E-20 5.6E-25 209.7 12.1 222 72-308 6-270 (308)
3 3sjy_A Translation initiation 99.8 1.2E-18 4.2E-23 201.4 26.4 226 73-307 5-270 (403)
4 1d2e_A Elongation factor TU (E 99.8 6E-19 2.1E-23 203.6 21.0 222 75-308 2-256 (397)
5 1kk1_A EIF2gamma; initiation o 99.8 9.4E-19 3.2E-23 202.7 20.5 213 74-295 8-254 (410)
6 3mca_A HBS1, elongation factor 99.8 6.5E-19 2.2E-23 213.2 16.3 224 73-310 174-456 (592)
7 1wf3_A GTP-binding protein; GT 99.8 1.8E-19 6.3E-24 200.8 10.3 211 77-308 8-260 (301)
8 2c78_A Elongation factor TU-A; 99.8 3.1E-18 1.1E-22 198.1 19.7 223 74-308 9-274 (405)
9 1s0u_A EIF-2-gamma, translatio 99.8 2.2E-18 7.5E-23 199.6 17.4 213 74-295 6-252 (408)
10 3j2k_7 ERF3, eukaryotic polype 99.8 5.9E-17 2E-21 189.6 26.5 220 74-308 15-293 (439)
11 3avx_A Elongation factor TS, e 99.7 2.6E-17 8.9E-22 207.4 22.5 226 74-311 294-550 (1289)
12 1ega_A Protein (GTP-binding pr 99.7 1.6E-18 5.5E-23 193.0 7.2 214 76-308 8-261 (301)
13 3p26_A Elongation factor 1 alp 99.7 3.7E-16 1.3E-20 184.8 25.9 226 75-308 32-320 (483)
14 3izq_1 HBS1P, elongation facto 99.7 8E-17 2.7E-21 195.5 20.4 228 73-308 164-454 (611)
15 1f60_A Elongation factor EEF1A 99.7 1.4E-16 4.9E-21 187.2 21.9 220 75-307 6-293 (458)
16 2elf_A Protein translation elo 99.7 1.7E-16 5.9E-21 181.8 19.9 210 78-308 23-243 (370)
17 1zun_B Sulfate adenylate trans 99.7 5.5E-16 1.9E-20 181.0 23.5 222 75-309 23-295 (434)
18 1jny_A EF-1-alpha, elongation 99.7 7.4E-16 2.5E-20 180.0 20.5 220 75-307 5-282 (435)
19 1r5b_A Eukaryotic peptide chai 99.7 3.7E-16 1.3E-20 184.2 17.7 218 75-307 42-321 (467)
20 1g7s_A Translation initiation 99.6 5.1E-15 1.8E-19 178.9 19.4 221 76-313 5-286 (594)
21 2ywe_A GTP-binding protein LEP 99.6 2.1E-14 7.3E-19 173.4 21.8 209 76-307 6-242 (600)
22 3cb4_D GTP-binding protein LEP 99.6 2.4E-14 8.1E-19 173.1 21.1 209 76-307 4-240 (599)
23 4dhe_A Probable GTP-binding pr 99.6 1.1E-14 3.8E-19 152.4 14.8 158 75-239 28-211 (223)
24 3tr5_A RF-3, peptide chain rel 99.6 4.4E-14 1.5E-18 168.8 21.3 215 76-306 13-346 (528)
25 3vqt_A RF-3, peptide chain rel 99.6 4.2E-14 1.4E-18 169.7 20.4 121 77-200 32-180 (548)
26 3izy_P Translation initiation 99.6 1.3E-15 4.6E-20 181.6 6.6 213 75-307 3-226 (537)
27 1zo1_I IF2, translation initia 99.6 3.1E-15 1E-19 177.2 8.1 208 75-305 3-223 (501)
28 1svi_A GTP-binding protein YSX 99.5 2.1E-13 7E-18 139.3 16.8 151 75-236 22-192 (195)
29 3pqc_A Probable GTP-binding pr 99.5 1.4E-13 4.9E-18 139.8 15.0 150 76-236 23-191 (195)
30 3j25_A Tetracycline resistance 99.5 2.8E-15 9.7E-20 183.0 2.1 211 77-306 3-295 (638)
31 2hjg_A GTP-binding protein ENG 99.5 8.9E-14 3.1E-18 162.3 14.1 155 74-236 173-346 (436)
32 2h5e_A Peptide chain release f 99.5 6.6E-13 2.2E-17 158.7 20.8 216 76-306 13-347 (529)
33 4dcu_A GTP-binding protein ENG 99.5 1.7E-13 5.9E-18 160.8 15.3 156 73-236 192-366 (456)
34 1dar_A EF-G, elongation factor 99.5 1.6E-12 5.4E-17 160.1 23.1 122 76-200 12-157 (691)
35 2dyk_A GTP-binding protein; GT 99.5 1.6E-13 5.4E-18 135.2 11.5 144 77-236 2-159 (161)
36 1upt_A ARL1, ADP-ribosylation 99.5 2E-13 6.9E-18 135.8 12.2 153 75-236 6-166 (171)
37 2xex_A Elongation factor G; GT 99.5 1.6E-12 5.5E-17 160.1 22.9 121 76-199 10-154 (693)
38 2lkc_A Translation initiation 99.5 1.1E-13 3.9E-18 138.7 10.4 155 74-236 6-168 (178)
39 2dy1_A Elongation factor G; tr 99.5 1.3E-12 4.3E-17 160.4 21.1 211 75-306 8-330 (665)
40 4fn5_A EF-G 1, elongation fact 99.5 6.3E-13 2.2E-17 164.2 18.6 120 77-199 14-164 (709)
41 2rdo_7 EF-G, elongation factor 99.5 3.7E-12 1.3E-16 157.1 25.3 121 76-199 10-161 (704)
42 2qu8_A Putative nucleolar GTP- 99.5 6.7E-13 2.3E-17 140.4 16.0 155 75-236 28-202 (228)
43 1zj6_A ADP-ribosylation factor 99.5 3.2E-13 1.1E-17 137.6 12.7 158 75-241 15-180 (187)
44 3clv_A RAB5 protein, putative; 99.4 1.2E-12 4.2E-17 133.1 16.5 149 75-236 6-201 (208)
45 1c1y_A RAS-related protein RAP 99.4 7.2E-13 2.5E-17 131.0 13.9 149 76-236 3-164 (167)
46 3i8s_A Ferrous iron transport 99.4 1.5E-13 5.2E-18 150.7 9.8 146 76-236 3-166 (274)
47 3iby_A Ferrous iron transport 99.4 1.4E-13 4.9E-18 149.7 9.1 144 77-235 2-163 (256)
48 1kao_A RAP2A; GTP-binding prot 99.4 9.1E-13 3.1E-17 129.8 13.9 148 76-235 3-162 (167)
49 1r8s_A ADP-ribosylation factor 99.4 8.6E-13 2.9E-17 130.5 13.3 150 78-236 2-159 (164)
50 4dsu_A GTPase KRAS, isoform 2B 99.4 9.2E-13 3.1E-17 133.2 13.5 149 75-236 3-163 (189)
51 2efe_B Small GTP-binding prote 99.4 8.5E-13 2.9E-17 132.7 13.2 150 75-237 11-173 (181)
52 1mky_A Probable GTP-binding pr 99.4 1.3E-12 4.6E-17 152.5 16.9 154 74-235 178-351 (439)
53 1u8z_A RAS-related protein RAL 99.4 1.1E-12 3.7E-17 129.4 13.4 149 75-236 3-164 (168)
54 2erx_A GTP-binding protein DI- 99.4 1.2E-12 4.1E-17 129.8 13.6 149 76-236 3-164 (172)
55 1mky_A Probable GTP-binding pr 99.4 6.8E-13 2.3E-17 155.0 13.7 147 77-237 2-164 (439)
56 4bas_A ADP-ribosylation factor 99.4 7.9E-13 2.7E-17 135.2 12.4 156 74-237 15-187 (199)
57 2fn4_A P23, RAS-related protei 99.4 1E-12 3.5E-17 131.6 13.0 150 75-236 8-169 (181)
58 2hxs_A RAB-26, RAS-related pro 99.4 1.4E-12 4.9E-17 130.7 14.1 152 74-237 4-171 (178)
59 1zd9_A ADP-ribosylation factor 99.4 9E-13 3.1E-17 134.8 12.8 152 76-236 22-182 (188)
60 3bc1_A RAS-related protein RAB 99.4 1.2E-12 4E-17 132.6 13.4 148 75-235 10-181 (195)
61 2gj8_A MNME, tRNA modification 99.4 1.4E-12 4.8E-17 132.1 13.8 142 75-235 3-162 (172)
62 3kkq_A RAS-related protein M-R 99.4 2.2E-12 7.4E-17 130.4 15.1 150 74-235 16-178 (183)
63 2h57_A ADP-ribosylation factor 99.4 1.1E-12 3.9E-17 133.9 12.9 152 75-236 20-184 (190)
64 2ce2_X GTPase HRAS; signaling 99.4 3.1E-12 1.1E-16 125.6 15.1 147 76-235 3-161 (166)
65 3q72_A GTP-binding protein RAD 99.4 1.5E-12 5E-17 129.1 12.7 148 76-235 2-160 (166)
66 2a9k_A RAS-related protein RAL 99.4 1.9E-12 6.4E-17 130.4 13.6 149 75-236 17-178 (187)
67 1ek0_A Protein (GTP-binding pr 99.4 1.7E-12 5.7E-17 128.5 12.9 148 76-235 3-165 (170)
68 1z0j_A RAB-22, RAS-related pro 99.4 2.1E-12 7.1E-17 128.1 13.6 150 75-236 5-166 (170)
69 1ksh_A ARF-like protein 2; sma 99.4 8.5E-13 2.9E-17 134.0 10.7 155 74-237 16-178 (186)
70 2hjg_A GTP-binding protein ENG 99.4 7.5E-13 2.6E-17 154.5 11.6 145 77-237 4-163 (436)
71 2g6b_A RAS-related protein RAB 99.4 1.5E-12 5E-17 130.8 12.0 151 74-237 8-172 (180)
72 1z2a_A RAS-related protein RAB 99.4 2.1E-12 7.2E-17 127.8 12.6 147 76-235 5-163 (168)
73 1r2q_A RAS-related protein RAB 99.4 2.9E-12 9.8E-17 126.8 13.6 149 75-236 5-166 (170)
74 1z0f_A RAB14, member RAS oncog 99.4 3.2E-12 1.1E-16 127.7 14.1 148 75-235 14-174 (179)
75 3a1s_A Iron(II) transport prot 99.4 1.5E-12 5.2E-17 141.7 12.7 147 76-237 5-165 (258)
76 2fh5_B SR-beta, signal recogni 99.4 3.9E-12 1.3E-16 132.4 15.2 108 75-184 6-129 (214)
77 2fg5_A RAB-22B, RAS-related pr 99.4 1.8E-12 6.1E-17 133.0 12.3 150 75-237 22-184 (192)
78 2bov_A RAla, RAS-related prote 99.4 3.4E-12 1.2E-16 131.2 14.4 149 75-236 13-174 (206)
79 2gf0_A GTP-binding protein DI- 99.4 4E-12 1.4E-16 129.9 14.7 151 74-237 6-169 (199)
80 3tkl_A RAS-related protein RAB 99.4 2.3E-12 7.8E-17 131.5 12.8 151 75-237 15-177 (196)
81 3k53_A Ferrous iron transport 99.4 1.1E-12 3.9E-17 143.1 11.2 146 76-236 3-163 (271)
82 2b6h_A ADP-ribosylation factor 99.4 1.5E-12 5.3E-17 134.0 11.5 153 74-236 27-188 (192)
83 1g16_A RAS-related protein SEC 99.4 2E-12 6.7E-17 128.2 11.8 149 76-237 3-163 (170)
84 3t5g_A GTP-binding protein RHE 99.4 1.1E-12 3.7E-17 132.4 10.0 150 76-237 6-167 (181)
85 1z08_A RAS-related protein RAB 99.4 1.9E-12 6.4E-17 128.6 11.2 150 74-236 4-166 (170)
86 2nzj_A GTP-binding protein REM 99.4 5.7E-12 2E-16 125.7 14.7 149 75-236 3-166 (175)
87 2oil_A CATX-8, RAS-related pro 99.4 4E-12 1.4E-16 130.0 13.7 149 75-236 24-185 (193)
88 2gf9_A RAS-related protein RAB 99.4 1.7E-12 5.9E-17 132.4 10.8 149 76-236 22-182 (189)
89 2p5s_A RAS and EF-hand domain 99.4 3.7E-12 1.3E-16 131.4 13.4 151 74-236 26-194 (199)
90 2h17_A ADP-ribosylation factor 99.4 8.8E-13 3E-17 133.8 8.4 151 75-234 20-178 (181)
91 2y8e_A RAB-protein 6, GH09086P 99.4 2.2E-12 7.6E-17 128.9 11.2 148 76-236 14-174 (179)
92 3tw8_B RAS-related protein RAB 99.4 1.5E-12 5.3E-17 130.4 10.0 151 74-236 7-168 (181)
93 2il1_A RAB12; G-protein, GDP, 99.4 3.1E-12 1.1E-16 131.4 12.4 150 76-236 26-187 (192)
94 2wji_A Ferrous iron transport 99.4 2.7E-12 9.3E-17 128.6 11.7 145 76-235 3-161 (165)
95 4dcu_A GTP-binding protein ENG 99.4 1.2E-12 4.1E-17 153.7 10.5 143 77-235 24-181 (456)
96 4djt_A GTP-binding nuclear pro 99.4 1.7E-12 5.9E-17 135.4 10.6 152 74-237 9-173 (218)
97 3llu_A RAS-related GTP-binding 99.4 6.2E-12 2.1E-16 129.6 14.6 153 75-234 19-192 (196)
98 1zbd_A Rabphilin-3A; G protein 99.4 5.5E-12 1.9E-16 129.9 14.2 147 76-234 8-166 (203)
99 3bwd_D RAC-like GTP-binding pr 99.3 1.9E-12 6.6E-17 130.2 10.5 151 75-236 7-178 (182)
100 3t1o_A Gliding protein MGLA; G 99.3 3.9E-12 1.3E-16 129.3 12.8 147 75-236 13-189 (198)
101 2x77_A ADP-ribosylation factor 99.3 6.6E-13 2.3E-17 135.3 7.1 155 74-237 20-182 (189)
102 1xzp_A Probable tRNA modificat 99.3 2.6E-12 8.8E-17 151.9 13.1 144 76-236 243-402 (482)
103 1x3s_A RAS-related protein RAB 99.3 4.8E-12 1.7E-16 128.7 13.4 151 75-238 14-177 (195)
104 3b1v_A Ferrous iron uptake tra 99.3 2.1E-12 7.2E-17 141.9 11.3 144 76-235 3-160 (272)
105 1f6b_A SAR1; gtpases, N-termin 99.3 1.6E-12 5.6E-17 134.6 9.7 153 75-234 24-194 (198)
106 1fzq_A ADP-ribosylation factor 99.3 3.6E-12 1.2E-16 129.8 12.0 151 75-236 15-175 (181)
107 3cph_A RAS-related protein SEC 99.3 4.6E-12 1.6E-16 131.1 12.9 149 75-236 19-179 (213)
108 1moz_A ARL1, ADP-ribosylation 99.3 9.3E-13 3.2E-17 132.9 7.4 154 74-236 16-177 (183)
109 3con_A GTPase NRAS; structural 99.3 5.4E-12 1.8E-16 128.5 13.1 149 75-236 20-180 (190)
110 1wms_A RAB-9, RAB9, RAS-relate 99.3 6.3E-12 2.1E-16 125.9 13.4 150 75-236 6-171 (177)
111 2atv_A RERG, RAS-like estrogen 99.3 9.5E-12 3.2E-16 127.8 14.9 149 75-236 27-188 (196)
112 1z06_A RAS-related protein RAB 99.3 4.4E-12 1.5E-16 129.4 12.3 137 75-218 19-169 (189)
113 2a5j_A RAS-related protein RAB 99.3 4.7E-12 1.6E-16 129.6 12.5 150 74-236 19-181 (191)
114 1mh1_A RAC1; GTP-binding, GTPa 99.3 3.7E-12 1.3E-16 128.4 11.5 155 76-238 5-179 (186)
115 3dz8_A RAS-related protein RAB 99.3 3.1E-12 1.1E-16 130.9 10.8 150 75-236 22-183 (191)
116 3c5c_A RAS-like protein 12; GD 99.3 5.9E-12 2E-16 129.0 12.7 149 75-236 20-183 (187)
117 1m2o_B GTP-binding protein SAR 99.3 4.2E-12 1.4E-16 130.5 11.4 148 75-234 22-187 (190)
118 2qtf_A Protein HFLX, GTP-bindi 99.3 1.7E-11 5.7E-16 140.2 16.9 153 76-237 179-352 (364)
119 1vg8_A RAS-related protein RAB 99.3 4.8E-12 1.6E-16 130.4 11.3 152 74-237 6-173 (207)
120 3oes_A GTPase rhebl1; small GT 99.3 3.1E-12 1.1E-16 132.2 9.6 151 75-237 23-185 (201)
121 2atx_A Small GTP binding prote 99.3 1.7E-11 5.7E-16 125.4 14.9 149 76-236 18-190 (194)
122 2wjg_A FEOB, ferrous iron tran 99.3 6.4E-12 2.2E-16 127.5 11.8 147 76-237 7-167 (188)
123 3q85_A GTP-binding protein REM 99.3 9E-12 3.1E-16 123.8 12.3 147 77-235 3-163 (169)
124 4gzl_A RAS-related C3 botulinu 99.3 8.1E-12 2.8E-16 129.8 12.2 154 74-235 28-201 (204)
125 3reg_A RHO-like small GTPase; 99.3 4.3E-12 1.5E-16 130.0 10.0 152 74-237 21-186 (194)
126 2f7s_A C25KG, RAS-related prot 99.3 5.1E-12 1.7E-16 131.8 10.5 149 76-236 25-196 (217)
127 1ky3_A GTP-binding protein YPT 99.3 8.6E-12 2.9E-16 125.0 11.8 151 74-236 6-175 (182)
128 1n0u_A EF-2, elongation factor 99.3 4.8E-11 1.6E-15 149.9 20.7 143 76-219 19-218 (842)
129 3lxw_A GTPase IMAP family memb 99.3 2E-11 6.8E-16 131.9 14.9 158 74-238 19-207 (247)
130 2cxx_A Probable GTP-binding pr 99.3 3.9E-11 1.3E-15 121.5 16.1 148 77-236 2-181 (190)
131 3gee_A MNME, tRNA modification 99.3 4.4E-12 1.5E-16 149.8 10.4 144 76-236 233-395 (476)
132 2xtp_A GTPase IMAP family memb 99.3 8E-12 2.8E-16 134.9 11.6 155 74-238 20-207 (260)
133 3qq5_A Small GTP-binding prote 99.3 2.3E-12 7.8E-17 150.0 7.6 149 74-238 32-195 (423)
134 2bcg_Y Protein YP2, GTP-bindin 99.3 8.7E-12 3E-16 128.9 11.2 149 76-236 8-168 (206)
135 2bme_A RAB4A, RAS-related prot 99.3 5.5E-12 1.9E-16 127.5 9.5 150 75-237 9-171 (186)
136 3o47_A ADP-ribosylation factor 99.3 5.5E-12 1.9E-16 142.0 10.4 152 76-236 165-324 (329)
137 2hup_A RAS-related protein RAB 99.3 1.6E-11 5.5E-16 127.3 12.8 149 76-237 29-191 (201)
138 2j0v_A RAC-like GTP-binding pr 99.3 1.1E-11 3.9E-16 128.6 11.7 152 75-238 8-179 (212)
139 2iwr_A Centaurin gamma 1; ANK 99.3 2.5E-11 8.6E-16 122.0 13.8 147 75-235 6-165 (178)
140 1lnz_A SPO0B-associated GTP-bi 99.3 5.3E-12 1.8E-16 143.1 9.4 147 78-238 160-329 (342)
141 2yc2_C IFT27, small RAB-relate 99.3 4.4E-12 1.5E-16 130.4 8.0 147 76-235 20-188 (208)
142 2aka_B Dynamin-1; fusion prote 99.3 7.6E-12 2.6E-16 137.2 10.3 152 75-235 25-249 (299)
143 2o52_A RAS-related protein RAB 99.3 1.1E-11 3.6E-16 128.4 10.4 149 75-236 24-185 (200)
144 2q3h_A RAS homolog gene family 99.3 2.4E-11 8.1E-16 125.0 12.9 152 74-236 18-192 (201)
145 2fu5_C RAS-related protein RAB 99.3 3.3E-12 1.1E-16 129.1 6.3 149 75-236 7-168 (183)
146 2qpt_A EH domain-containing pr 99.3 1.2E-11 4E-16 148.6 12.0 120 75-197 64-244 (550)
147 2ew1_A RAS-related protein RAB 99.3 1.1E-11 3.9E-16 129.1 10.2 148 76-236 26-186 (201)
148 2j69_A Bacterial dynamin-like 99.3 3.3E-11 1.1E-15 148.5 16.0 109 75-185 68-245 (695)
149 3ihw_A Centg3; RAS, centaurin, 99.3 4.8E-11 1.6E-15 122.1 14.6 148 74-235 18-176 (184)
150 2j1l_A RHO-related GTP-binding 99.3 3.4E-11 1.2E-15 126.1 13.7 154 75-237 33-207 (214)
151 3geh_A MNME, tRNA modification 99.2 9.5E-12 3.3E-16 146.4 10.3 144 76-237 224-382 (462)
152 3t5d_A Septin-7; GTP-binding p 99.2 3.3E-11 1.1E-15 131.8 13.9 150 74-234 6-199 (274)
153 2gco_A H9, RHO-related GTP-bin 99.2 1.3E-11 4.6E-16 127.6 10.0 152 76-235 25-196 (201)
154 3lxx_A GTPase IMAP family memb 99.2 3.6E-11 1.2E-15 128.3 13.4 110 74-185 27-160 (239)
155 2fv8_A H6, RHO-related GTP-bin 99.2 1.7E-11 5.7E-16 127.4 10.4 155 76-238 25-199 (207)
156 3cbq_A GTP-binding protein REM 99.2 6.3E-11 2.1E-15 122.5 14.4 149 75-236 22-185 (195)
157 2e87_A Hypothetical protein PH 99.2 7.1E-11 2.4E-15 134.2 16.1 150 74-237 165-334 (357)
158 1jwy_B Dynamin A GTPase domain 99.2 1.4E-11 4.7E-16 136.5 9.5 66 119-185 130-213 (315)
159 3lvq_E ARF-GAP with SH3 domain 99.2 1.8E-11 6.2E-16 144.7 11.1 152 76-237 322-482 (497)
160 3cpj_B GTP-binding protein YPT 99.2 1.7E-11 5.9E-16 129.0 9.7 150 76-238 13-175 (223)
161 3q3j_B RHO-related GTP-binding 99.2 3.2E-11 1.1E-15 126.6 11.4 149 76-237 27-201 (214)
162 3gj0_A GTP-binding nuclear pro 99.2 1.2E-11 4.2E-16 129.6 8.1 150 74-237 13-173 (221)
163 1nrj_B SR-beta, signal recogni 99.2 2.3E-11 8E-16 126.8 9.5 142 74-218 10-168 (218)
164 1m7b_A RND3/RHOE small GTP-bin 99.2 1.1E-10 3.7E-15 118.7 12.5 152 74-235 5-179 (184)
165 3r7w_A Gtpase1, GTP-binding pr 99.2 2.9E-10 9.9E-15 126.7 17.0 141 76-217 3-165 (307)
166 4a9a_A Ribosome-interacting GT 99.2 4.3E-11 1.5E-15 137.1 10.4 104 77-182 73-194 (376)
167 1pui_A ENGB, probable GTP-bind 99.2 3.1E-10 1E-14 117.5 15.6 154 74-236 24-196 (210)
168 3th5_A RAS-related C3 botulinu 98.8 3.7E-12 1.3E-16 131.7 0.0 108 76-184 30-148 (204)
169 3l0i_B RAS-related protein RAB 99.1 1.7E-12 5.7E-17 134.0 -3.1 150 74-235 31-192 (199)
170 1wxq_A GTP-binding protein; st 99.1 6.8E-11 2.3E-15 136.6 9.5 76 78-153 2-114 (397)
171 1gwn_A RHO-related GTP-binding 99.1 2.2E-10 7.6E-15 119.6 12.3 151 75-235 27-200 (205)
172 2ged_A SR-beta, signal recogni 99.1 9.8E-11 3.4E-15 119.4 8.8 109 74-184 46-170 (193)
173 2wkq_A NPH1-1, RAS-related C3 99.1 2.4E-10 8.1E-15 126.5 12.5 155 75-237 154-328 (332)
174 2x2e_A Dynamin-1; nitration, h 99.1 9.3E-11 3.2E-15 133.1 8.3 151 76-235 31-254 (353)
175 3p32_A Probable GTPase RV1496/ 99.1 3.2E-10 1.1E-14 128.9 12.5 152 74-236 77-281 (355)
176 2zej_A Dardarin, leucine-rich 99.1 1E-09 3.4E-14 111.8 14.8 151 77-235 3-174 (184)
177 1h65_A Chloroplast outer envel 99.1 8E-10 2.7E-14 120.4 14.7 110 75-184 38-168 (270)
178 3zvr_A Dynamin-1; hydrolase, D 99.1 1.8E-10 6.2E-15 142.0 10.6 151 76-235 51-274 (772)
179 3dpu_A RAB family protein; roc 99.1 9.1E-10 3.1E-14 131.7 16.0 148 76-238 41-207 (535)
180 2www_A Methylmalonic aciduria 99.1 9.1E-10 3.1E-14 125.1 14.2 151 74-235 72-275 (349)
181 2g3y_A GTP-binding protein GEM 99.0 1.1E-09 3.6E-14 115.7 13.1 148 76-236 37-200 (211)
182 4dkx_A RAS-related protein RAB 99.0 1.3E-09 4.4E-14 115.7 13.6 148 77-237 14-174 (216)
183 2cjw_A GTP-binding protein GEM 99.0 1.4E-09 4.9E-14 112.0 12.5 147 76-235 6-168 (192)
184 3def_A T7I23.11 protein; chlor 99.0 2.8E-09 9.6E-14 115.7 15.2 109 75-183 35-164 (262)
185 3t34_A Dynamin-related protein 99.0 3.8E-10 1.3E-14 128.2 8.1 133 78-217 36-244 (360)
186 2p67_A LAO/AO transport system 99.0 1.1E-09 3.8E-14 123.8 11.1 151 74-235 54-257 (341)
187 1udx_A The GTP-binding protein 98.9 7E-09 2.4E-13 120.4 15.1 147 77-237 158-323 (416)
188 2qag_A Septin-2, protein NEDD5 98.9 2.2E-09 7.4E-14 122.5 10.6 139 74-218 35-218 (361)
189 2f9l_A RAB11B, member RAS onco 98.9 5.9E-09 2E-13 107.5 11.8 148 76-236 5-165 (199)
190 3c5h_A Glucocorticoid receptor 98.8 7.5E-09 2.6E-13 112.0 10.7 83 140-235 162-251 (255)
191 2qm8_A GTPase/ATPase; G protei 98.8 2.5E-08 8.7E-13 112.7 14.5 152 74-235 53-257 (337)
192 1yrb_A ATP(GTP)binding protein 98.8 3.9E-08 1.3E-12 105.5 14.3 109 120-236 109-254 (262)
193 1jal_A YCHF protein; nucleotid 98.8 2.5E-08 8.6E-13 113.7 13.4 76 77-152 3-108 (363)
194 1oix_A RAS-related protein RAB 98.8 2.1E-08 7.3E-13 103.0 11.6 146 76-234 29-187 (191)
195 2wsm_A Hydrogenase expression/ 98.7 9.8E-09 3.4E-13 107.3 6.8 144 76-236 30-211 (221)
196 2qag_C Septin-7; cell cycle, c 98.7 7.5E-08 2.6E-12 111.9 13.4 140 72-217 27-210 (418)
197 2dby_A GTP-binding protein; GD 98.7 7.2E-08 2.5E-12 110.3 12.9 76 77-152 2-111 (368)
198 2qag_B Septin-6, protein NEDD5 98.6 7.1E-08 2.4E-12 112.0 10.7 136 74-215 40-217 (427)
199 3r7w_B Gtpase2, GTP-binding pr 98.6 2.2E-07 7.6E-12 104.5 14.1 136 79-216 2-157 (331)
200 2j37_W Signal recognition part 98.5 4.3E-07 1.5E-11 107.8 11.5 108 74-184 99-254 (504)
201 3ec1_A YQEH GTPase; atnos1, at 98.4 1E-08 3.5E-13 117.3 -2.8 120 77-200 163-303 (369)
202 3sop_A Neuronal-specific septi 98.4 1.2E-06 4.2E-11 95.9 13.6 121 77-200 3-169 (270)
203 3h2y_A GTPase family protein; 98.4 1.8E-08 6E-13 115.3 -1.9 120 77-200 161-302 (368)
204 1tq4_A IIGP1, interferon-induc 98.4 3.1E-06 1.1E-10 98.1 16.0 156 76-238 69-252 (413)
205 2hf9_A Probable hydrogenase ni 98.4 4.5E-07 1.5E-11 94.9 7.3 145 76-235 38-220 (226)
206 2qnr_A Septin-2, protein NEDD5 98.3 1.7E-06 5.9E-11 96.1 11.8 140 73-218 15-199 (301)
207 2ohf_A Protein OLA1, GTP-bindi 98.2 1.4E-06 4.7E-11 100.4 7.6 79 74-152 20-128 (396)
208 3dm5_A SRP54, signal recogniti 98.2 3.7E-05 1.3E-09 89.8 18.9 129 74-215 98-274 (443)
209 2v3c_C SRP54, signal recogniti 98.2 4.3E-06 1.5E-10 97.6 10.3 108 74-184 97-252 (432)
210 1f5n_A Interferon-induced guan 98.1 3.1E-06 1E-10 102.2 8.0 91 74-166 36-146 (592)
211 1ni3_A YCHF GTPase, YCHF GTP-b 98.0 8.8E-06 3E-10 93.7 8.8 79 74-152 18-127 (392)
212 1j8m_F SRP54, signal recogniti 98.0 4.8E-05 1.6E-09 84.5 13.5 126 76-214 98-273 (297)
213 3kl4_A SRP54, signal recogniti 97.9 6.8E-05 2.3E-09 87.4 14.4 130 73-215 94-273 (433)
214 3e70_C DPA, signal recognition 97.7 0.00034 1.2E-08 78.7 14.5 127 74-214 127-302 (328)
215 1puj_A YLQF, conserved hypothe 97.6 3.9E-05 1.3E-09 84.5 5.4 54 74-129 118-174 (282)
216 2yhs_A FTSY, cell division pro 97.5 0.00054 1.8E-08 80.9 14.0 128 73-214 290-472 (503)
217 3szr_A Interferon-induced GTP- 97.4 0.00033 1.1E-08 85.1 10.7 65 120-185 147-229 (608)
218 2xxa_A Signal recognition part 97.4 0.0008 2.7E-08 78.5 12.9 108 74-184 98-254 (433)
219 1vma_A Cell division protein F 97.3 0.0015 5.2E-08 72.7 13.6 128 73-214 101-283 (306)
220 1zu4_A FTSY; GTPase, signal re 97.3 0.0022 7.4E-08 71.9 14.6 109 73-184 102-268 (320)
221 1rj9_A FTSY, signal recognitio 97.2 0.0031 1.1E-07 70.1 14.7 126 75-214 101-281 (304)
222 2ffh_A Protein (FFH); SRP54, s 97.1 0.0031 1.1E-07 73.3 14.0 107 75-184 97-251 (425)
223 1puj_A YLQF, conserved hypothe 97.1 0.0011 3.8E-08 72.8 9.8 92 126-233 5-100 (282)
224 3cnl_A YLQF, putative uncharac 97.1 0.00027 9.2E-09 77.0 4.0 51 77-129 100-153 (262)
225 3q5d_A Atlastin-1; G protein, 97.0 0.00066 2.3E-08 79.4 6.6 26 74-99 65-90 (447)
226 4dzz_A Plasmid partitioning pr 96.9 0.0045 1.6E-07 63.2 11.5 105 77-183 2-143 (206)
227 2yv5_A YJEQ protein; hydrolase 96.9 0.0014 4.9E-08 72.6 7.9 74 137-218 76-153 (302)
228 2og2_A Putative signal recogni 96.8 0.013 4.6E-07 66.5 15.6 128 73-214 154-337 (359)
229 1ls1_A Signal recognition part 96.8 0.013 4.5E-07 64.7 14.9 127 75-214 97-271 (295)
230 2px0_A Flagellar biosynthesis 96.8 0.0029 9.8E-08 70.1 9.5 109 74-185 103-254 (296)
231 3ec1_A YQEH GTPase; atnos1, at 96.8 0.0015 5E-08 74.6 7.1 106 121-234 50-157 (369)
232 3b9q_A Chloroplast SRP recepto 96.7 0.019 6.5E-07 63.7 15.3 109 73-185 97-261 (302)
233 1u0l_A Probable GTPase ENGC; p 96.6 0.0046 1.6E-07 68.3 9.5 92 120-218 63-157 (301)
234 3cnl_A YLQF, putative uncharac 96.6 0.0015 5.1E-08 71.1 5.4 74 131-218 12-85 (262)
235 3ohm_A Guanine nucleotide-bind 96.5 0.0047 1.6E-07 69.4 8.8 66 118-184 165-248 (327)
236 3la6_A Tyrosine-protein kinase 96.5 0.013 4.5E-07 64.4 11.8 63 121-183 203-267 (286)
237 3h2y_A GTPase family protein; 96.5 0.0026 8.7E-08 72.6 6.2 106 122-235 49-156 (368)
238 1t9h_A YLOQ, probable GTPase E 96.2 0.0057 1.9E-07 68.2 7.1 74 137-218 83-161 (307)
239 3ea0_A ATPase, para family; al 96.2 0.015 5.2E-07 61.0 10.1 64 120-183 119-185 (245)
240 1cip_A Protein (guanine nucleo 96.2 0.0038 1.3E-07 70.9 5.6 113 118-236 191-341 (353)
241 1zcb_A G alpha I/13; GTP-bindi 96.1 0.0037 1.3E-07 71.2 5.3 112 118-235 199-349 (362)
242 3cwq_A Para family chromosome 96.1 0.013 4.3E-07 61.1 8.8 106 78-184 2-134 (209)
243 1hyq_A MIND, cell division inh 96.1 0.024 8.1E-07 60.5 10.9 66 119-184 110-176 (263)
244 3k9g_A PF-32 protein; ssgcid, 96.0 0.044 1.5E-06 58.6 12.7 64 119-182 144-209 (267)
245 3q9l_A Septum site-determining 95.9 0.026 8.9E-07 59.8 9.9 64 119-182 113-185 (260)
246 3bfv_A CAPA1, CAPB2, membrane 95.8 0.051 1.8E-06 59.1 12.2 63 120-182 192-256 (271)
247 3cio_A ETK, tyrosine-protein k 95.6 0.046 1.6E-06 60.3 10.7 63 121-183 215-279 (299)
248 3end_A Light-independent proto 95.3 0.036 1.2E-06 60.8 8.9 64 119-182 156-225 (307)
249 3ney_A 55 kDa erythrocyte memb 95.3 0.041 1.4E-06 57.4 8.7 26 75-100 18-43 (197)
250 2rcn_A Probable GTPase ENGC; Y 94.4 0.068 2.3E-06 60.7 8.0 74 138-218 128-203 (358)
251 1lvg_A Guanylate kinase, GMP k 94.2 0.019 6.5E-07 59.2 2.7 26 75-100 3-28 (198)
252 1azs_C GS-alpha; complex (lyas 94.2 0.06 2E-06 62.1 7.1 66 118-184 215-298 (402)
253 3l82_B F-box only protein 4; T 94.1 0.4 1.4E-05 50.8 12.5 90 136-235 121-219 (227)
254 3a00_A Guanylate kinase, GMP k 94.0 0.022 7.5E-07 57.9 2.8 25 76-100 1-25 (186)
255 3c8u_A Fructokinase; YP_612366 93.9 0.033 1.1E-06 57.6 3.9 28 74-101 20-47 (208)
256 4ido_A Atlastin-1; GTPase, GTP 93.8 0.1 3.5E-06 61.0 8.1 24 74-97 65-88 (457)
257 3zvl_A Bifunctional polynucleo 93.8 0.11 3.7E-06 60.1 8.2 87 73-177 255-343 (416)
258 1t9h_A YLOQ, probable GTPase E 93.7 0.014 4.9E-07 65.0 0.8 24 77-100 174-197 (307)
259 3tr0_A Guanylate kinase, GMP k 93.7 0.037 1.3E-06 56.4 3.8 26 75-100 6-31 (205)
260 1kgd_A CASK, peripheral plasma 93.7 0.035 1.2E-06 56.2 3.6 24 77-100 6-29 (180)
261 3jvv_A Twitching mobility prot 93.6 0.1 3.5E-06 59.2 7.6 26 75-100 122-147 (356)
262 2xj4_A MIPZ; replication, cell 93.5 0.094 3.2E-06 57.1 6.7 32 120-151 104-136 (286)
263 1zp6_A Hypothetical protein AT 93.5 0.042 1.4E-06 55.4 3.7 25 75-99 8-32 (191)
264 1znw_A Guanylate kinase, GMP k 93.4 0.038 1.3E-06 57.1 3.3 25 76-100 20-44 (207)
265 3tau_A Guanylate kinase, GMP k 93.3 0.046 1.6E-06 56.7 3.8 27 74-100 6-32 (208)
266 1jbk_A CLPB protein; beta barr 93.2 0.15 5.1E-06 50.1 7.2 25 76-100 43-67 (195)
267 2xtz_A Guanine nucleotide-bind 93.2 0.056 1.9E-06 61.3 4.4 65 118-183 181-263 (354)
268 3asz_A Uridine kinase; cytidin 93.0 0.049 1.7E-06 56.0 3.4 27 74-100 4-30 (211)
269 1ye8_A Protein THEP1, hypothet 93.0 0.049 1.7E-06 55.5 3.3 23 78-100 2-24 (178)
270 1z6g_A Guanylate kinase; struc 93.0 0.043 1.5E-06 57.5 2.9 27 74-100 21-47 (218)
271 2j41_A Guanylate kinase; GMP, 92.8 0.06 2E-06 54.8 3.7 26 75-100 5-30 (207)
272 2cvh_A DNA repair and recombin 92.8 0.66 2.3E-05 47.3 11.7 25 74-98 18-42 (220)
273 4eun_A Thermoresistant glucoki 92.6 0.065 2.2E-06 55.0 3.6 27 74-100 27-53 (200)
274 1s96_A Guanylate kinase, GMP k 92.5 0.066 2.3E-06 56.5 3.6 26 75-100 15-40 (219)
275 3tif_A Uncharacterized ABC tra 92.4 0.058 2E-06 57.5 3.1 25 76-100 31-55 (235)
276 4fid_A G protein alpha subunit 92.4 0.1 3.5E-06 58.9 5.1 69 115-184 156-242 (340)
277 3aez_A Pantothenate kinase; tr 92.4 0.076 2.6E-06 59.1 4.0 27 74-100 88-114 (312)
278 2rcn_A Probable GTPase ENGC; Y 92.3 0.063 2.2E-06 61.0 3.3 25 77-101 216-240 (358)
279 3uie_A Adenylyl-sulfate kinase 92.2 0.085 2.9E-06 54.1 3.9 27 74-100 23-49 (200)
280 1ly1_A Polynucleotide kinase; 92.1 0.085 2.9E-06 52.3 3.7 23 76-98 2-24 (181)
281 2pcj_A ABC transporter, lipopr 92.1 0.063 2.2E-06 56.7 2.8 24 77-100 31-54 (224)
282 3tqc_A Pantothenate kinase; bi 92.0 0.095 3.3E-06 58.7 4.3 28 73-100 89-116 (321)
283 4gp7_A Metallophosphoesterase; 92.0 0.072 2.5E-06 53.5 3.0 24 75-98 8-31 (171)
284 1b0u_A Histidine permease; ABC 91.9 0.074 2.5E-06 57.6 3.2 25 76-100 32-56 (262)
285 2qor_A Guanylate kinase; phosp 91.9 0.079 2.7E-06 54.5 3.2 27 74-100 10-36 (204)
286 1bif_A 6-phosphofructo-2-kinas 91.9 0.072 2.5E-06 62.4 3.2 98 74-171 37-151 (469)
287 2onk_A Molybdate/tungstate ABC 91.8 0.086 2.9E-06 56.4 3.5 24 77-100 25-48 (240)
288 1g6h_A High-affinity branched- 91.8 0.077 2.6E-06 57.3 3.1 24 77-100 34-57 (257)
289 2bbw_A Adenylate kinase 4, AK4 91.7 0.086 3E-06 55.9 3.4 24 76-99 27-50 (246)
290 3gfo_A Cobalt import ATP-bindi 91.7 0.08 2.7E-06 57.9 3.2 24 77-100 35-58 (275)
291 3l2o_B F-box only protein 4; s 91.7 0.94 3.2E-05 50.1 11.5 96 131-236 200-305 (312)
292 3b85_A Phosphate starvation-in 91.6 0.082 2.8E-06 55.3 3.1 23 77-99 23-45 (208)
293 4g1u_C Hemin import ATP-bindin 91.6 0.083 2.8E-06 57.4 3.1 24 77-100 38-61 (266)
294 2cbz_A Multidrug resistance-as 91.6 0.084 2.9E-06 56.3 3.1 24 77-100 32-55 (237)
295 3kjh_A CO dehydrogenase/acetyl 91.5 0.18 6.1E-06 52.6 5.5 63 119-181 131-194 (254)
296 2pze_A Cystic fibrosis transme 91.5 0.09 3.1E-06 55.7 3.2 24 77-100 35-58 (229)
297 1ji0_A ABC transporter; ATP bi 91.4 0.089 3E-06 56.2 3.1 24 77-100 33-56 (240)
298 1htw_A HI0065; nucleotide-bind 91.4 0.12 4.1E-06 51.8 3.8 25 76-100 33-57 (158)
299 2jeo_A Uridine-cytidine kinase 91.4 0.11 3.9E-06 55.0 3.9 27 74-100 23-49 (245)
300 1mv5_A LMRA, multidrug resista 91.4 0.092 3.1E-06 56.1 3.2 26 75-100 27-52 (243)
301 2olj_A Amino acid ABC transpor 91.4 0.092 3.1E-06 57.0 3.2 25 76-100 50-74 (263)
302 2ff7_A Alpha-hemolysin translo 91.4 0.091 3.1E-06 56.4 3.1 24 77-100 36-59 (247)
303 2d2e_A SUFC protein; ABC-ATPas 91.3 0.099 3.4E-06 56.2 3.3 23 77-99 30-52 (250)
304 1u0l_A Probable GTPase ENGC; p 91.3 0.087 3E-06 58.1 2.9 25 76-100 169-193 (301)
305 1g3q_A MIND ATPase, cell divis 91.3 0.2 7E-06 52.1 5.6 65 120-184 112-177 (237)
306 1vpl_A ABC transporter, ATP-bi 91.2 0.096 3.3E-06 56.6 3.2 24 77-100 42-65 (256)
307 2zu0_C Probable ATP-dependent 91.2 0.1 3.5E-06 56.7 3.4 23 77-99 47-69 (267)
308 1kag_A SKI, shikimate kinase I 91.2 0.097 3.3E-06 51.8 2.9 25 76-100 4-28 (173)
309 1sgw_A Putative ABC transporte 91.2 0.085 2.9E-06 55.5 2.6 24 77-100 36-59 (214)
310 2bdt_A BH3686; alpha-beta prot 91.1 0.11 3.8E-06 52.4 3.3 22 77-98 3-24 (189)
311 2qi9_C Vitamin B12 import ATP- 91.0 0.11 3.6E-06 56.1 3.2 24 77-100 27-50 (249)
312 2ghi_A Transport protein; mult 91.0 0.1 3.5E-06 56.4 3.1 25 76-100 46-70 (260)
313 1knq_A Gluconate kinase; ALFA/ 90.9 0.16 5.4E-06 50.5 4.2 25 75-99 7-31 (175)
314 2ixe_A Antigen peptide transpo 90.9 0.11 3.6E-06 56.7 3.1 25 76-100 45-69 (271)
315 2p65_A Hypothetical protein PF 90.9 0.31 1.1E-05 47.9 6.3 25 76-100 43-67 (187)
316 2ihy_A ABC transporter, ATP-bi 90.9 0.11 3.7E-06 57.0 3.2 24 77-100 48-71 (279)
317 3lnc_A Guanylate kinase, GMP k 90.8 0.091 3.1E-06 55.1 2.4 26 75-100 26-52 (231)
318 2nq2_C Hypothetical ABC transp 90.7 0.11 3.9E-06 55.9 3.1 24 77-100 32-55 (253)
319 2rhm_A Putative kinase; P-loop 90.7 0.14 4.6E-06 51.5 3.5 27 74-100 3-29 (193)
320 2yz2_A Putative ABC transporte 90.7 0.11 3.9E-06 56.2 3.1 24 77-100 34-57 (266)
321 3te6_A Regulatory protein SIR3 90.7 0.89 3.1E-05 50.7 10.4 28 73-100 42-69 (318)
322 3t61_A Gluconokinase; PSI-biol 90.7 0.12 4E-06 52.9 3.0 26 75-100 17-42 (202)
323 2yvu_A Probable adenylyl-sulfa 90.6 0.18 6.1E-06 50.8 4.3 28 73-100 10-37 (186)
324 1odf_A YGR205W, hypothetical 3 90.6 0.16 5.4E-06 55.9 4.2 28 74-101 29-56 (290)
325 1ex7_A Guanylate kinase; subst 90.5 0.12 4E-06 53.4 2.9 23 78-100 3-25 (186)
326 2dr3_A UPF0273 protein PH0284; 90.5 0.94 3.2E-05 47.0 9.9 25 75-99 22-46 (247)
327 2yv5_A YJEQ protein; hydrolase 90.5 0.13 4.3E-06 56.9 3.3 23 76-99 165-187 (302)
328 3lda_A DNA repair protein RAD5 90.5 0.86 2.9E-05 52.4 10.3 24 75-98 177-200 (400)
329 1sxj_A Activator 1 95 kDa subu 90.5 1.4 4.6E-05 52.2 12.4 27 74-100 75-101 (516)
330 2qt1_A Nicotinamide riboside k 90.4 0.17 5.9E-06 51.8 4.0 28 73-100 18-45 (207)
331 1sq5_A Pantothenate kinase; P- 90.3 0.15 5E-06 56.4 3.6 27 74-100 78-104 (308)
332 1qhx_A CPT, protein (chloramph 90.2 0.16 5.6E-06 50.4 3.6 25 76-100 3-27 (178)
333 2chg_A Replication factor C sm 90.2 1.2 4E-05 44.7 10.0 22 79-100 41-62 (226)
334 1rz3_A Hypothetical protein rb 90.2 0.16 5.3E-06 52.3 3.4 27 74-100 20-46 (201)
335 1d2n_A N-ethylmaleimide-sensit 90.2 0.81 2.8E-05 48.9 9.3 26 74-99 62-87 (272)
336 3bos_A Putative DNA replicatio 90.2 0.26 9E-06 50.7 5.2 25 76-100 52-76 (242)
337 2eyu_A Twitching motility prot 90.1 0.17 5.9E-06 54.7 3.9 26 75-100 24-49 (261)
338 1jjv_A Dephospho-COA kinase; P 90.1 0.17 5.9E-06 51.7 3.7 23 76-98 2-24 (206)
339 4a74_A DNA repair and recombin 90.1 0.14 4.6E-06 52.9 2.9 26 75-100 24-49 (231)
340 1cke_A CK, MSSA, protein (cyti 90.1 0.16 5.3E-06 52.6 3.4 25 76-100 5-29 (227)
341 2v9p_A Replication protein E1; 90.0 0.15 5.3E-06 56.6 3.5 26 75-100 125-150 (305)
342 3tui_C Methionine import ATP-b 89.9 0.15 5.2E-06 58.0 3.4 24 77-100 55-78 (366)
343 2ehv_A Hypothetical protein PH 89.8 0.16 5.6E-06 53.0 3.3 24 75-98 29-52 (251)
344 3lw7_A Adenylate kinase relate 89.8 0.17 5.7E-06 49.4 3.2 20 77-96 2-21 (179)
345 2pt7_A CAG-ALFA; ATPase, prote 89.7 1.4 4.7E-05 49.3 11.0 25 77-101 172-196 (330)
346 2pjz_A Hypothetical protein ST 89.7 0.16 5.4E-06 55.2 3.2 24 77-100 31-54 (263)
347 2i3b_A HCR-ntpase, human cance 89.6 0.15 5.2E-06 52.5 2.8 23 78-100 3-25 (189)
348 3h4m_A Proteasome-activating n 89.6 0.89 3E-05 48.7 9.0 27 74-100 49-75 (285)
349 1tev_A UMP-CMP kinase; ploop, 89.6 0.2 6.9E-06 50.0 3.7 24 76-99 3-26 (196)
350 2qz4_A Paraplegin; AAA+, SPG7, 89.6 1.3 4.6E-05 46.4 10.2 27 74-100 37-63 (262)
351 3b9p_A CG5977-PA, isoform A; A 89.6 1.4 4.8E-05 47.5 10.6 27 74-100 52-78 (297)
352 3vaa_A Shikimate kinase, SK; s 89.5 0.2 6.8E-06 51.3 3.6 25 75-99 24-48 (199)
353 3kb2_A SPBC2 prophage-derived 89.5 0.18 6.2E-06 49.4 3.2 23 77-99 2-24 (173)
354 3fvq_A Fe(3+) IONS import ATP- 89.3 0.16 5.6E-06 57.7 2.9 24 77-100 31-54 (359)
355 2plr_A DTMP kinase, probable t 89.2 0.23 7.8E-06 50.5 3.8 25 76-100 4-28 (213)
356 1kht_A Adenylate kinase; phosp 89.2 0.21 7.2E-06 49.8 3.5 25 76-100 3-27 (192)
357 1np6_A Molybdopterin-guanine d 89.2 0.21 7.3E-06 50.8 3.5 25 76-100 6-30 (174)
358 2bbs_A Cystic fibrosis transme 89.2 0.16 5.5E-06 56.0 2.7 25 76-100 64-88 (290)
359 4b4t_L 26S protease subunit RP 89.1 1.3 4.5E-05 51.5 10.5 29 72-100 211-239 (437)
360 3nh6_A ATP-binding cassette SU 89.1 0.12 4.2E-06 57.4 1.8 25 77-101 81-105 (306)
361 1z47_A CYSA, putative ABC-tran 89.0 0.19 6.5E-06 57.0 3.3 24 77-100 42-65 (355)
362 1njg_A DNA polymerase III subu 89.0 1.1 3.7E-05 45.5 8.7 25 76-100 45-69 (250)
363 2vp4_A Deoxynucleoside kinase; 89.0 0.22 7.6E-06 52.3 3.6 28 72-99 16-43 (230)
364 2yyz_A Sugar ABC transporter, 88.9 0.2 6.8E-06 56.9 3.3 24 77-100 30-53 (359)
365 3rlf_A Maltose/maltodextrin im 88.9 0.2 6.9E-06 57.3 3.4 24 77-100 30-53 (381)
366 2it1_A 362AA long hypothetical 88.8 0.2 7E-06 56.9 3.4 24 77-100 30-53 (362)
367 4fcw_A Chaperone protein CLPB; 88.8 1.1 3.9E-05 48.3 9.2 26 75-100 46-71 (311)
368 1g29_1 MALK, maltose transport 88.6 0.21 7.2E-06 57.0 3.3 24 77-100 30-53 (372)
369 3ec2_A DNA replication protein 88.5 0.19 6.3E-06 50.4 2.5 25 76-100 38-62 (180)
370 1v43_A Sugar-binding transport 88.5 0.22 7.6E-06 56.8 3.4 24 77-100 38-61 (372)
371 3bh0_A DNAB-like replicative h 88.5 1.7 5.9E-05 48.0 10.5 27 74-100 66-92 (315)
372 1xwi_A SKD1 protein; VPS4B, AA 88.4 0.74 2.5E-05 51.1 7.5 28 73-100 42-69 (322)
373 2f1r_A Molybdopterin-guanine d 88.2 0.12 4.2E-06 52.4 0.9 25 77-101 3-27 (171)
374 1uf9_A TT1252 protein; P-loop, 88.2 0.29 9.8E-06 49.5 3.7 26 74-99 6-31 (203)
375 2c95_A Adenylate kinase 1; tra 88.1 0.26 8.8E-06 49.6 3.2 25 75-99 8-32 (196)
376 2oze_A ORF delta'; para, walke 88.1 1.4 4.7E-05 47.7 9.3 65 120-184 155-226 (298)
377 2ph1_A Nucleotide-binding prot 88.0 0.92 3.1E-05 48.4 7.7 64 119-182 128-194 (262)
378 3hr8_A Protein RECA; alpha and 87.9 1.2 4.1E-05 50.5 8.8 26 75-100 60-85 (356)
379 2v54_A DTMP kinase, thymidylat 87.7 0.31 1.1E-05 49.4 3.6 25 76-100 4-28 (204)
380 1gvn_B Zeta; postsegregational 87.7 0.34 1.2E-05 53.0 4.1 27 74-100 31-57 (287)
381 3trf_A Shikimate kinase, SK; a 87.6 0.3 1E-05 48.9 3.4 24 76-99 5-28 (185)
382 3cm0_A Adenylate kinase; ATP-b 87.6 0.3 1E-05 48.8 3.4 24 76-99 4-27 (186)
383 4e22_A Cytidylate kinase; P-lo 87.5 0.31 1.1E-05 52.0 3.7 25 75-99 26-50 (252)
384 2jaq_A Deoxyguanosine kinase; 87.5 0.3 1E-05 49.2 3.4 23 78-100 2-24 (205)
385 1nn5_A Similar to deoxythymidy 87.5 0.29 1E-05 49.9 3.3 26 75-100 8-33 (215)
386 2cdn_A Adenylate kinase; phosp 87.5 0.33 1.1E-05 49.4 3.7 27 74-100 18-44 (201)
387 1hqc_A RUVB; extended AAA-ATPa 87.5 2.8 9.7E-05 45.4 11.4 25 75-99 37-61 (324)
388 3kta_A Chromosome segregation 87.4 0.29 9.8E-06 48.9 3.1 24 76-99 26-49 (182)
389 1nks_A Adenylate kinase; therm 87.4 0.3 1E-05 48.7 3.2 24 77-100 2-25 (194)
390 2if2_A Dephospho-COA kinase; a 87.4 0.27 9.3E-06 50.1 3.0 22 77-98 2-23 (204)
391 3d31_A Sulfate/molybdate ABC t 87.4 0.2 6.7E-06 56.7 2.0 24 77-100 27-50 (348)
392 2ewv_A Twitching motility prot 87.4 0.31 1.1E-05 55.4 3.7 28 74-101 134-161 (372)
393 4a1f_A DNAB helicase, replicat 87.4 1.4 4.9E-05 49.5 9.0 26 75-100 45-70 (338)
394 2qp9_X Vacuolar protein sortin 87.3 1 3.6E-05 50.5 8.0 27 74-100 82-108 (355)
395 4b4t_K 26S protease regulatory 87.3 1.6 5.6E-05 50.6 9.7 28 73-100 203-230 (428)
396 2bwj_A Adenylate kinase 5; pho 87.3 0.29 9.8E-06 49.3 3.0 24 76-99 12-35 (199)
397 1ukz_A Uridylate kinase; trans 87.1 0.38 1.3E-05 48.9 3.9 26 74-99 13-38 (203)
398 1aky_A Adenylate kinase; ATP:A 87.1 0.34 1.2E-05 50.1 3.6 26 75-100 3-28 (220)
399 3gd7_A Fusion complex of cysti 87.0 0.27 9.2E-06 56.5 2.9 24 77-100 48-71 (390)
400 1qf9_A UMP/CMP kinase, protein 87.0 0.33 1.1E-05 48.4 3.3 25 75-99 5-29 (194)
401 3a4m_A L-seryl-tRNA(SEC) kinas 87.0 0.37 1.3E-05 51.7 3.8 25 75-99 3-27 (260)
402 2wwf_A Thymidilate kinase, put 87.0 0.31 1.1E-05 49.7 3.1 26 75-100 9-34 (212)
403 1wcv_1 SOJ, segregation protei 86.9 2 6.8E-05 45.5 9.5 80 119-200 111-197 (257)
404 3tlx_A Adenylate kinase 2; str 86.9 0.39 1.3E-05 51.0 3.9 26 75-100 28-53 (243)
405 1sxj_E Activator 1 40 kDa subu 86.9 2.1 7.1E-05 47.2 10.0 24 75-99 36-59 (354)
406 2p5t_B PEZT; postsegregational 86.7 0.3 1E-05 52.2 2.9 28 73-100 29-56 (253)
407 1vht_A Dephospho-COA kinase; s 86.7 0.39 1.3E-05 49.6 3.7 23 76-98 4-26 (218)
408 1m7g_A Adenylylsulfate kinase; 86.7 0.4 1.4E-05 49.4 3.8 26 75-100 24-49 (211)
409 2pez_A Bifunctional 3'-phospho 86.7 0.42 1.4E-05 47.7 3.8 26 75-100 4-29 (179)
410 1oxx_K GLCV, glucose, ABC tran 86.6 0.19 6.3E-06 57.0 1.3 24 77-100 32-55 (353)
411 2vli_A Antibiotic resistance p 86.6 0.3 1E-05 48.6 2.7 25 75-99 4-28 (183)
412 1fnn_A CDC6P, cell division co 86.6 2.2 7.4E-05 47.4 10.0 24 77-100 45-68 (389)
413 2x8a_A Nuclear valosin-contain 86.4 0.39 1.3E-05 52.1 3.7 26 75-100 43-68 (274)
414 2kjq_A DNAA-related protein; s 86.4 0.36 1.2E-05 47.6 3.1 25 77-101 37-61 (149)
415 1xjc_A MOBB protein homolog; s 86.3 0.4 1.4E-05 48.8 3.4 25 76-100 4-28 (169)
416 1lw7_A Transcriptional regulat 86.3 0.29 9.8E-06 55.2 2.7 25 76-100 170-194 (365)
417 1zak_A Adenylate kinase; ATP:A 86.3 0.31 1E-05 50.6 2.7 26 75-100 4-29 (222)
418 3pxg_A Negative regulator of g 86.3 0.52 1.8E-05 55.2 4.9 66 76-149 201-274 (468)
419 1zd8_A GTP:AMP phosphotransfer 86.2 0.35 1.2E-05 50.4 3.1 26 75-100 6-31 (227)
420 2gza_A Type IV secretion syste 86.1 0.27 9.4E-06 55.6 2.4 25 77-101 176-200 (361)
421 2zan_A Vacuolar protein sortin 85.9 1.2 4.1E-05 51.7 7.6 27 74-100 165-191 (444)
422 3umf_A Adenylate kinase; rossm 85.9 0.45 1.5E-05 50.2 3.7 27 74-100 27-53 (217)
423 3eie_A Vacuolar protein sortin 85.8 1.4 4.8E-05 48.5 7.9 26 74-99 49-74 (322)
424 1y63_A LMAJ004144AAA protein; 85.8 0.45 1.5E-05 48.0 3.6 25 75-99 9-33 (184)
425 1ixz_A ATP-dependent metallopr 85.8 0.45 1.5E-05 50.3 3.7 25 76-100 49-73 (254)
426 1in4_A RUVB, holliday junction 85.7 0.37 1.3E-05 53.6 3.1 26 75-100 50-75 (334)
427 2w0m_A SSO2452; RECA, SSPF, un 85.4 0.43 1.5E-05 48.9 3.3 26 75-100 22-47 (235)
428 3iij_A Coilin-interacting nucl 85.3 0.41 1.4E-05 47.8 2.9 24 76-99 11-34 (180)
429 1nij_A Hypothetical protein YJ 85.3 0.36 1.2E-05 53.5 2.8 24 77-100 5-28 (318)
430 1svm_A Large T antigen; AAA+ f 85.2 0.46 1.6E-05 54.3 3.6 27 73-99 166-192 (377)
431 1gtv_A TMK, thymidylate kinase 85.2 0.2 6.7E-06 51.3 0.5 23 78-100 2-24 (214)
432 1p9r_A General secretion pathw 85.2 0.42 1.4E-05 55.3 3.3 24 77-100 168-191 (418)
433 3n70_A Transport activator; si 85.1 1.9 6.5E-05 41.6 7.5 23 78-100 26-48 (145)
434 1qvr_A CLPB protein; coiled co 84.9 1.4 4.9E-05 55.4 8.2 24 77-100 192-215 (854)
435 3euj_A Chromosome partition pr 84.9 0.44 1.5E-05 56.2 3.3 24 77-100 30-53 (483)
436 1yqt_A RNAse L inhibitor; ATP- 84.8 0.44 1.5E-05 56.9 3.4 24 77-100 48-71 (538)
437 1f2t_A RAD50 ABC-ATPase; DNA d 84.7 0.6 2E-05 46.0 3.8 25 75-99 22-46 (149)
438 4b4t_J 26S protease regulatory 84.7 3.1 0.0001 48.0 10.1 29 72-100 178-206 (405)
439 3ozx_A RNAse L inhibitor; ATP 84.4 0.61 2.1E-05 55.7 4.4 24 77-100 26-49 (538)
440 1uj2_A Uridine-cytidine kinase 84.3 0.59 2E-05 49.6 3.8 27 74-100 20-46 (252)
441 2iyv_A Shikimate kinase, SK; t 84.2 0.44 1.5E-05 47.7 2.6 23 77-99 3-25 (184)
442 2npi_A Protein CLP1; CLP1-PCF1 84.1 0.38 1.3E-05 56.4 2.3 24 77-100 139-162 (460)
443 1ltq_A Polynucleotide kinase; 84.0 0.59 2E-05 50.7 3.7 24 76-99 2-25 (301)
444 3r20_A Cytidylate kinase; stru 84.0 0.56 1.9E-05 50.0 3.4 25 76-100 9-33 (233)
445 3j16_B RLI1P; ribosome recycli 84.0 0.5 1.7E-05 57.3 3.4 24 77-100 104-127 (608)
446 2f6r_A COA synthase, bifunctio 84.0 0.56 1.9E-05 51.1 3.5 24 74-97 73-96 (281)
447 3d8b_A Fidgetin-like protein 1 84.0 1.2 4.2E-05 50.0 6.3 27 74-100 115-141 (357)
448 1jr3_A DNA polymerase III subu 83.9 1.8 6.2E-05 47.9 7.7 25 76-100 38-62 (373)
449 1l8q_A Chromosomal replication 83.9 1.1 3.7E-05 49.2 5.8 25 76-100 37-61 (324)
450 3syl_A Protein CBBX; photosynt 83.8 1.7 5.8E-05 46.9 7.3 27 74-100 65-91 (309)
451 1cr0_A DNA primase/helicase; R 83.8 0.49 1.7E-05 51.4 2.9 27 75-101 34-60 (296)
452 4eaq_A DTMP kinase, thymidylat 83.7 0.71 2.4E-05 48.7 4.0 27 75-101 25-51 (229)
453 1iy2_A ATP-dependent metallopr 83.7 0.63 2.2E-05 50.1 3.7 25 76-100 73-97 (278)
454 2oap_1 GSPE-2, type II secreti 83.5 0.44 1.5E-05 56.6 2.6 24 77-100 261-284 (511)
455 1lv7_A FTSH; alpha/beta domain 83.5 0.67 2.3E-05 49.1 3.8 27 74-100 43-69 (257)
456 2z0h_A DTMP kinase, thymidylat 83.4 0.61 2.1E-05 46.8 3.3 23 78-100 2-24 (197)
457 2pbr_A DTMP kinase, thymidylat 83.4 0.63 2.1E-05 46.4 3.3 23 78-100 2-24 (195)
458 3vfd_A Spastin; ATPase, microt 83.4 1.7 5.9E-05 49.1 7.4 26 74-99 146-171 (389)
459 3bgw_A DNAB-like replicative h 83.4 2.2 7.6E-05 49.6 8.4 26 75-100 196-221 (444)
460 1v5w_A DMC1, meiotic recombina 83.3 6.8 0.00023 43.7 12.1 26 74-99 120-145 (343)
461 2ze6_A Isopentenyl transferase 83.3 0.64 2.2E-05 49.7 3.5 24 77-100 2-25 (253)
462 4b4t_I 26S protease regulatory 83.0 3.8 0.00013 47.5 10.0 29 72-100 212-240 (437)
463 3ozx_A RNAse L inhibitor; ATP 83.0 0.55 1.9E-05 56.1 3.2 24 77-100 295-318 (538)
464 3u61_B DNA polymerase accessor 83.0 3.6 0.00012 44.9 9.5 27 74-100 46-72 (324)
465 1via_A Shikimate kinase; struc 82.9 0.58 2E-05 46.5 2.8 22 78-99 6-27 (175)
466 1yqt_A RNAse L inhibitor; ATP- 82.7 0.61 2.1E-05 55.7 3.4 24 77-100 313-336 (538)
467 3fb4_A Adenylate kinase; psych 82.7 0.67 2.3E-05 47.6 3.3 23 78-100 2-24 (216)
468 3dl0_A Adenylate kinase; phosp 82.5 0.66 2.3E-05 47.7 3.1 23 78-100 2-24 (216)
469 1n0w_A DNA repair protein RAD5 82.3 0.71 2.4E-05 47.9 3.3 26 75-100 23-48 (243)
470 3qf7_A RAD50; ABC-ATPase, ATPa 82.3 0.75 2.6E-05 52.1 3.8 25 75-99 22-46 (365)
471 3pfi_A Holliday junction ATP-d 82.3 3.8 0.00013 44.9 9.4 77 75-169 54-134 (338)
472 3bk7_A ABC transporter ATP-bin 82.2 0.61 2.1E-05 56.6 3.2 24 77-100 118-141 (607)
473 1ak2_A Adenylate kinase isoenz 82.2 0.81 2.8E-05 47.9 3.7 26 75-100 15-40 (233)
474 3b5x_A Lipid A export ATP-bind 82.1 0.63 2.1E-05 56.0 3.2 25 77-101 370-394 (582)
475 1e6c_A Shikimate kinase; phosp 82.1 0.66 2.3E-05 45.6 2.9 23 77-99 3-25 (173)
476 2obl_A ESCN; ATPase, hydrolase 81.9 0.64 2.2E-05 52.4 3.0 24 77-100 72-95 (347)
477 3fkq_A NTRC-like two-domain pr 81.9 1.1 3.8E-05 50.6 5.0 26 73-98 140-166 (373)
478 1sxj_B Activator 1 37 kDa subu 81.7 2.2 7.4E-05 46.0 7.1 24 76-100 43-66 (323)
479 2yl4_A ATP-binding cassette SU 81.7 0.59 2E-05 56.4 2.8 25 77-101 371-395 (595)
480 3b60_A Lipid A export ATP-bind 81.7 0.6 2E-05 56.2 2.8 25 77-101 370-394 (582)
481 3bk7_A ABC transporter ATP-bin 81.7 0.7 2.4E-05 56.1 3.4 24 77-100 383-406 (607)
482 2pt5_A Shikimate kinase, SK; a 81.5 0.86 2.9E-05 44.6 3.4 22 78-99 2-23 (168)
483 1q3t_A Cytidylate kinase; nucl 81.4 0.88 3E-05 47.7 3.7 26 74-99 14-39 (236)
484 3qf4_B Uncharacterized ABC tra 81.3 0.64 2.2E-05 56.1 2.9 25 77-101 382-406 (598)
485 3j16_B RLI1P; ribosome recycli 80.9 0.78 2.7E-05 55.7 3.4 23 78-100 380-402 (608)
486 2z43_A DNA repair and recombin 80.7 4.3 0.00015 44.8 9.1 47 75-130 106-152 (324)
487 1byi_A Dethiobiotin synthase; 80.6 7 0.00024 40.0 10.2 79 119-199 108-194 (224)
488 1r6b_X CLPA protein; AAA+, N-t 80.3 2 6.8E-05 53.1 6.9 25 76-100 207-231 (758)
489 3be4_A Adenylate kinase; malar 80.3 0.75 2.6E-05 47.6 2.6 25 76-100 5-29 (217)
490 1iqp_A RFCS; clamp loader, ext 79.9 5.9 0.0002 42.7 9.7 22 79-100 49-70 (327)
491 3pxi_A Negative regulator of g 79.9 1.2 4E-05 55.2 4.6 66 76-149 201-274 (758)
492 3qks_A DNA double-strand break 79.8 1.1 3.8E-05 46.2 3.8 26 74-99 21-46 (203)
493 3t15_A Ribulose bisphosphate c 79.6 0.96 3.3E-05 49.4 3.3 28 73-100 33-60 (293)
494 2z4s_A Chromosomal replication 79.5 1.7 5.8E-05 50.4 5.5 25 76-100 130-154 (440)
495 4a82_A Cystic fibrosis transme 79.5 0.56 1.9E-05 56.4 1.5 25 77-101 368-392 (578)
496 2xb4_A Adenylate kinase; ATP-b 79.4 1 3.5E-05 46.9 3.4 23 78-100 2-24 (223)
497 2dpy_A FLII, flagellum-specifi 79.4 0.85 2.9E-05 53.1 3.0 24 77-100 158-181 (438)
498 2q6t_A DNAB replication FORK h 79.4 5.5 0.00019 46.0 9.8 26 75-100 199-224 (444)
499 3ake_A Cytidylate kinase; CMP 79.4 1.1 3.8E-05 45.3 3.5 23 78-100 4-26 (208)
500 1zuh_A Shikimate kinase; alpha 79.2 1.1 3.8E-05 44.0 3.4 23 77-99 8-30 (168)
No 1
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=8.2e-34 Score=335.64 Aligned_cols=203 Identities=17% Similarity=0.259 Sum_probs=141.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc----ccCCCCceeccEEE------EeCCCeeEEEEeCCC--Chh-HHHHHHHhc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY----TKLKVPEVRGPVTV------VSGKKRRLQFVECPN--DIN-GMIDCAKFA 141 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~----~~~~~~tt~~~Iti------~~~~k~rl~fIDtPG--dl~-smld~akvA 141 (1068)
++..|+|+|++|+|||||+++|++.. ......+...++|+ ....+..++|+|||| ++. .|+..+..|
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~a 97 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII 97 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhC
Confidence 45789999999999999999999865 11111122223442 122467999999999 443 488889999
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccc-ccCCCeEEEEecccCCc
Q 046721 142 DLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTE-LYHGAKLFKLSGLIQGK 220 (1068)
Q Consensus 142 DlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e-~~~~~kVf~ISAl~g~~ 220 (1068)
|++|||+|++.++..++.+++.++...|+|. |+|+||+|+.. ...+..+.+.+...+... .+...+++++||++|
T Consensus 98 D~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl~~-~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g-- 173 (482)
T 1wb1_A 98 DLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDNAG-TEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTG-- 173 (482)
T ss_dssp CEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTSSC-HHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTC--
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCccc-chhHHHHHHHHHHHHhhhcccccceEEEEECcCC--
Confidence 9999999999999999999999999999995 89999999986 344555666666655443 344678999999965
Q ss_pred CCchhhcchHHHHHHhhccc-ccccccCCe-EEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEec
Q 046721 221 YTKKDIGNLAEFISVMKFHS-LSWRTSHPY-ILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAG 295 (1068)
Q Consensus 221 y~~~ei~nLlR~I~~~k~r~-l~wR~~rPy-lLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG 295 (1068)
..+..|...|....+.+ +......|+ +.++++..+. ..|+ +++|.|.++.+++|+.|.+..
T Consensus 174 ---~gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~----------g~G~-v~~g~v~~G~l~~gd~v~~~p 236 (482)
T 1wb1_A 174 ---FGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIK----------GAGT-VVTGTINKGIVKVGDELKVLP 236 (482)
T ss_dssp ---TTHHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCS----------SCCC-EECCCCCBSCCCSSEEECCTT
T ss_pred ---CCHHHHHHHHHHhhcCccccccccccccccceeEEEec----------CCce-EEEEEEEEeEEeeCCEEEECC
Confidence 56777777776655433 121222343 4445554442 2455 478999988899999987643
No 2
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.82 E-value=1.6e-20 Score=209.67 Aligned_cols=222 Identities=19% Similarity=0.247 Sum_probs=162.1
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCC-CeeEEEEeCCCCh------------h-H
Q 046721 72 GEPPPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGK-KRRLQFVECPNDI------------N-G 133 (1068)
Q Consensus 72 ~~~pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~-k~rl~fIDtPGdl------------~-s 133 (1068)
..+||..|||+|.||||||||+|+|++.. ++..+++|+..+. +.... ..+++|+||||.. . .
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 34677899999999999999999999974 3456667766665 44555 8899999999931 1 2
Q ss_pred HHHHHHhcCEEEEEEeCCCCCchhHHHH-HHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEE
Q 046721 134 MIDCAKFADLALLLIDASHGFEMETFEF-LNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFK 212 (1068)
Q Consensus 134 mld~akvADlVLlVIDas~g~e~~t~ei-L~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ 212 (1068)
+..++..||++|||+|++.+....+..+ +..+...++| +|+|+||+|+..+...+....+.+...+ .....+|+
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~p-vilV~NK~Dl~~~~~~~~~~~~~l~~~~----~~~~~i~~ 160 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKP-VIVVINKIDKIGPAKNVLPLIDEIHKKH----PELTEIVP 160 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCC-EEEEEECGGGSSSGGGGHHHHHHHHHHC----TTCCCEEE
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCC-EEEEEECccCCCCHHHHHHHHHHHHHhc----cCCCeEEE
Confidence 4566789999999999999888888777 8888888888 8999999999843344445555554443 24578999
Q ss_pred EecccC------------------CcCCchhhcchH-HHHHHhhccccccc---ccCCeEEEEeEEecCCCccccccCCC
Q 046721 213 LSGLIQ------------------GKYTKKDIGNLA-EFISVMKFHSLSWR---TSHPYILVDRFEDVTPPERVHVNNKC 270 (1068)
Q Consensus 213 ISAl~g------------------~~y~~~ei~nLl-R~I~~~k~r~l~wR---~~rPylLadrved~~~~~~i~~~~~~ 270 (1068)
+||++| +.|+...+++.. +++.....|+..++ ..-||.++..++.+... ...
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~~~------~~~ 234 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPG------DAN 234 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEEC------SSC
T ss_pred EeCCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEEEc------cCC
Confidence 999987 345555555443 56555555554433 33499999988877431 101
Q ss_pred CceEEEEEEEEeeee--cCCcEEEEecCCCeeEEeeecCC
Q 046721 271 DRNVAIYGYLRGCNL--KKGTKVHIAGAGDYSLAGVTGLA 308 (1068)
Q Consensus 271 ~gtl~VtGyVRG~~L--~~nqlVhIpG~GdfqIk~I~~~~ 308 (1068)
++.+ +|++.++ +.+|+-+|+|.||-.|++|+..+
T Consensus 235 ~~~~----~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~a 270 (308)
T 3iev_A 235 PNML----VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRA 270 (308)
T ss_dssp TTSE----EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHH
T ss_pred CCeE----EEEEEEEEccCCcceEEEcCCcHHHHHHHHHH
Confidence 2444 4666666 88999999999999999998654
No 3
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.82 E-value=1.2e-18 Score=201.38 Aligned_cols=226 Identities=19% Similarity=0.213 Sum_probs=161.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccccCCCCcee------------ccEEEE-----------eCCCeeEEEEeCCC
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVR------------GPVTVV-----------SGKKRRLQFVECPN 129 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~------------~~Iti~-----------~~~k~rl~fIDtPG 129 (1068)
..++..|+++|++|+|||||+|+|++........... ..++.. .....+++|+||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 3567899999999999999999999853221111100 011100 00127899999999
Q ss_pred C--hh-HHHHHHHhcCEEEEEEeCCCCC-chhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccccc
Q 046721 130 D--IN-GMIDCAKFADLALLLIDASHGF-EMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELY 205 (1068)
Q Consensus 130 d--l~-smld~akvADlVLlVIDas~g~-e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~ 205 (1068)
. +. .|+..+..||++|||+|++.+. ..++.+++..+...|.+++|+|+||+|+... .......+.+...+.....
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~-~~~~~~~~~i~~~l~~~~~ 163 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSK-EEALSQYRQIKQFTKGTWA 163 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH-HHHHHHHHHHHHHHTTSTT
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccch-HHHHHHHHHHHHHHHhhCC
Confidence 3 44 4888999999999999999987 7788899998888898669999999999863 3445555666666655556
Q ss_pred CCCeEEEEecccCCcCCchhhcchHHHHHHhhcccccccccCCeEEEEeEEecCCCccccccCCCCceEEEEEEEEeeee
Q 046721 206 HGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWRTSHPYILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNL 285 (1068)
Q Consensus 206 ~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR~~rPylLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L 285 (1068)
...++|++||++| ..+..|+..|....+.+.......+.+.++++.++..+... -.+..|+ +++|+|..+.+
T Consensus 164 ~~~~ii~vSA~~g-----~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~--~~~~~G~-v~~g~v~~G~~ 235 (403)
T 3sjy_A 164 ENVPIIPVSALHK-----INIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQ--FNELKGG-VIGGSIIQGLF 235 (403)
T ss_dssp TTCCEEECBTTTT-----BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCC--SSSCCCC-EEEEEEEESCE
T ss_pred CCCEEEEEECCCC-----cChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcc--cccCcCc-EEEEEEEeCEE
Confidence 6889999999965 66778888887766655544455567778887776543210 0111345 48999999999
Q ss_pred cCCcEEEE-ecCC------------CeeEEeeecC
Q 046721 286 KKGTKVHI-AGAG------------DYSLAGVTGL 307 (1068)
Q Consensus 286 ~~nqlVhI-pG~G------------dfqIk~I~~~ 307 (1068)
++|+.|+| ||.. ...|++|...
T Consensus 236 ~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~ 270 (403)
T 3sjy_A 236 KVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFG 270 (403)
T ss_dssp ETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEET
T ss_pred ecCCEEEEeCCcccccccccccccccEEEEEEEEC
Confidence 99999987 5432 2477777764
No 4
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.81 E-value=6e-19 Score=203.64 Aligned_cols=222 Identities=19% Similarity=0.193 Sum_probs=157.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcccc-------------CCCCceeccEEE------EeCCCeeEEEEeCCC--Chh-
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTK-------------LKVPEVRGPVTV------VSGKKRRLQFVECPN--DIN- 132 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~-------------~~~~tt~~~Iti------~~~~k~rl~fIDtPG--dl~- 132 (1068)
++..|+|+|++|+|||||+++|++.... ....+...++|+ +.....+++|+|||| ++.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 4578999999999999999999985210 001111234543 234568999999999 443
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccccc--CCCeE
Q 046721 133 GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELY--HGAKL 210 (1068)
Q Consensus 133 smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~--~~~kV 210 (1068)
.|+..+..||++|||+|++.+...++.+++..+...|+|.+|+|+||+|+..+...+..+...++..+....+ ...++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 161 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPI 161 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCE
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcE
Confidence 4788889999999999999999999999999998899998789999999985444344444445444433222 25789
Q ss_pred EEEecccCCc------CCchhhcchHHHHHHhhcccccccccCCeEEEEeEEecCCCccccccCCCCceEEEEEEEEeee
Q 046721 211 FKLSGLIQGK------YTKKDIGNLAEFISVMKFHSLSWRTSHPYILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCN 284 (1068)
Q Consensus 211 f~ISAl~g~~------y~~~ei~nLlR~I~~~k~r~l~wR~~rPylLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~ 284 (1068)
|++||++|.. | ...+..|+..|....+.+....+..+.+.++++..++ ..|+ +++|.|..+.
T Consensus 162 i~~SA~~g~n~~~~~~~-~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~----------~~G~-v~~g~v~~G~ 229 (397)
T 1d2e_A 162 IVGSALCALEQRDPELG-LKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIP----------GRGT-VVTGTLERGI 229 (397)
T ss_dssp EECCHHHHHTTCCTTTT-HHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEET----------TTEE-EEEEECCBSE
T ss_pred EEeehhhcccccCCCcc-CCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeC----------CceE-EEEEEEeece
Confidence 9999997521 1 1126778888877666655444444556666766652 2455 5899999999
Q ss_pred ecCCcEEEEecCC---CeeEEeeecCC
Q 046721 285 LKKGTKVHIAGAG---DYSLAGVTGLA 308 (1068)
Q Consensus 285 L~~nqlVhIpG~G---dfqIk~I~~~~ 308 (1068)
|++|+.|.|.|.+ ..+|++|....
T Consensus 230 l~~gd~v~~~~~~~~~~~~V~~i~~~~ 256 (397)
T 1d2e_A 230 LKKGDECEFLGHSKNIRTVVTGIEMFH 256 (397)
T ss_dssp EETTCEEEEEETTEEEEEEEEEEEETT
T ss_pred EeCCCEEEEeCCCCCeEEEEEEEEECC
Confidence 9999999988875 45677776543
No 5
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.80 E-value=9.4e-19 Score=202.70 Aligned_cols=213 Identities=23% Similarity=0.279 Sum_probs=151.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEE---------EEe----------------CC----CeeEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVT---------VVS----------------GK----KRRLQF 124 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~It---------i~~----------------~~----k~rl~f 124 (1068)
.+.+.|+|+|++|+|||||+++|++............++| +.. +. ..+++|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 4568899999999999999999997642211111111111 100 01 268999
Q ss_pred EeCCC--Chh-HHHHHHHhcCEEEEEEeCCCCC-chhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHh
Q 046721 125 VECPN--DIN-GMIDCAKFADLALLLIDASHGF-EMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRF 200 (1068)
Q Consensus 125 IDtPG--dl~-smld~akvADlVLlVIDas~g~-e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~ 200 (1068)
||||| ++. .|+..+..||++|||+|++.++ ..++.+++..+...|++++|+|+||+|+... .......+.++.++
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~-~~~~~~~~~i~~~l 166 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDK-EKALENYRQIKEFI 166 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH-HHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCH-HHHHHHHHHHHHHH
Confidence 99999 344 4788889999999999999997 7889999988888898779999999999863 33334455566665
Q ss_pred cccccCCCeEEEEecccCCcCCchhhcchHHHHHHhhcccccccccCCeEEEEeEEecCCCccccccCCCCceEEEEEEE
Q 046721 201 GTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWRTSHPYILVDRFEDVTPPERVHVNNKCDRNVAIYGYL 280 (1068)
Q Consensus 201 ~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR~~rPylLadrved~~~~~~i~~~~~~~gtl~VtGyV 280 (1068)
........++|++||+++ ..+..|+..|....+.+..+....+.+.+++..++..|... .....|+ +++|.|
T Consensus 167 ~~~~~~~~~~i~vSA~~g-----~gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~--~~~~~G~-v~~g~v 238 (410)
T 1kk1_A 167 EGTVAENAPIIPISALHG-----ANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTP--PEKLVGG-VLDGSI 238 (410)
T ss_dssp TTSTTTTCCEEECBTTTT-----BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCSCCC------CCCCC-EEEEEE
T ss_pred HhcCcCCCeEEEeeCCCC-----CCHHHHHHHHHHhCCCCccccCCCcEEEEEEEEeccCCCcc--ccCCceE-EEEEEE
Confidence 544456789999999965 66778888887766666555555677888887776543210 0111344 589999
Q ss_pred EeeeecCCcEEEE-ec
Q 046721 281 RGCNLKKGTKVHI-AG 295 (1068)
Q Consensus 281 RG~~L~~nqlVhI-pG 295 (1068)
..+.|++|+.|.+ |+
T Consensus 239 ~~G~l~~gd~v~~~p~ 254 (410)
T 1kk1_A 239 VQGKLKVGDEIEIRPG 254 (410)
T ss_dssp EESCEETTCEEEEEEE
T ss_pred EeCeEeeCCEEEECCC
Confidence 9999999999886 44
No 6
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.78 E-value=6.5e-19 Score=213.17 Aligned_cols=224 Identities=19% Similarity=0.253 Sum_probs=139.0
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhcc---ccCC-------------------------CCceeccEEE------EeCC
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHY---TKLK-------------------------VPEVRGPVTV------VSGK 118 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~-------------------------~~tt~~~Iti------~~~~ 118 (1068)
..+.+.|+|||++|+|||||+++|++.. .... ......++|+ +...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3456789999999999999999997631 1000 0001123442 1224
Q ss_pred CeeEEEEeCCCC--hh-HHHHHHHhcCEEEEEEeCCCC-----C--chhHHHHHHHHHhCCCCcEEEEEeCCCcCC-cHH
Q 046721 119 KRRLQFVECPND--IN-GMIDCAKFADLALLLIDASHG-----F--EMETFEFLNLMQNHGLPNVMGVLTHLDKFT-DKK 187 (1068)
Q Consensus 119 k~rl~fIDtPGd--l~-smld~akvADlVLlVIDas~g-----~--e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk-~~k 187 (1068)
+..++||||||. +. .|+..+..||++|||||++.+ + ..++.+++.++...|+|++|+|+||+|++. ...
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~ 333 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSED 333 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHH
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHH
Confidence 678999999993 33 478888999999999999975 4 789999999999999998999999999985 345
Q ss_pred HHHHHHHHHHHHh-ccccc--CCCeEEEEecccCCcCCchh---------hcchHHHHHHhhcccccccccCCe-EEEEe
Q 046721 188 KLRKTKQHLKHRF-GTELY--HGAKLFKLSGLIQGKYTKKD---------IGNLAEFISVMKFHSLSWRTSHPY-ILVDR 254 (1068)
Q Consensus 188 ~l~~vkk~Lk~~~-~~e~~--~~~kVf~ISAl~g~~y~~~e---------i~nLlR~I~~~k~r~l~wR~~rPy-lLadr 254 (1068)
.+..+.+.+..++ ....+ ...++|++||++|....... ...|+..|....+ +.. ....|+ +.++.
T Consensus 334 ~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~~-~~~~p~r~~v~~ 411 (592)
T 3mca_A 334 RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEK-PYRKPLRLSIDD 411 (592)
T ss_dssp HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CSC-TTTSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-ccc-cccccchheeeE
Confidence 5666777777665 22222 34589999999874322100 1256677755443 222 223454 44555
Q ss_pred EEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCC-CeeEEeeecCCCC
Q 046721 255 FEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAG-DYSLAGVTGLADP 310 (1068)
Q Consensus 255 ved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~G-dfqIk~I~~~~DP 310 (1068)
+..+ ..|+ +++|.|..+.|++|+.|.|.+.| ...|++|.....|
T Consensus 412 v~~~-----------~~g~-v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~~~ 456 (592)
T 3mca_A 412 VYRS-----------PRSV-TVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDP 456 (592)
T ss_dssp EEEE-----------TTEE-EEEEEEEESEEETTCEEEETTTTEEEEEEEEECSSSC
T ss_pred EEec-----------CCeE-EEEEEEeeeeEccCCEEEEccCCceEEEEEEEEcCcc
Confidence 5433 1344 58999999999999999986555 6789999875443
No 7
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.78 E-value=1.8e-19 Score=200.76 Aligned_cols=211 Identities=16% Similarity=0.210 Sum_probs=151.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCC----------hhH-HHHHHHhc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPND----------ING-MIDCAKFA 141 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd----------l~s-mld~akvA 141 (1068)
..|+|||+||||||||+|+|++.. ++..+++|+..+. +......+++|+||||. +.. +..++..|
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~a 87 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADV 87 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcC
Confidence 579999999999999999999974 3445666666555 45556789999999993 222 44567899
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhC--CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC-
Q 046721 142 DLALLLIDASHGFEMETFEFLNLMQNH--GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ- 218 (1068)
Q Consensus 142 DlVLlVIDas~g~e~~t~eiL~~L~~~--GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g- 218 (1068)
|++|||+|++.+++..+..++..+... ++| +|+|+||+|+......+ ...+... .+...+|++||++|
T Consensus 88 d~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p-~ilV~NK~Dl~~~~~~~---~~~~~~~-----~~~~~~~~iSA~~g~ 158 (301)
T 1wf3_A 88 NAVVWVVDLRHPPTPEDELVARALKPLVGKVP-ILLVGNKLDAAKYPEEA---MKAYHEL-----LPEAEPRMLSALDER 158 (301)
T ss_dssp SEEEEEEETTSCCCHHHHHHHHHHGGGTTTSC-EEEEEECGGGCSSHHHH---HHHHHHT-----STTSEEEECCTTCHH
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHhhcCCCC-EEEEEECcccCCchHHH---HHHHHHh-----cCcCcEEEEeCCCCC
Confidence 999999999998888777888888776 888 89999999998643212 2222222 35567999999865
Q ss_pred -----------------CcCCchhh-cchH-HHHHHhhcccccc---cccCCeEEEEeEEecCCCccccccCCCCceEEE
Q 046721 219 -----------------GKYTKKDI-GNLA-EFISVMKFHSLSW---RTSHPYILVDRFEDVTPPERVHVNNKCDRNVAI 276 (1068)
Q Consensus 219 -----------------~~y~~~ei-~nLl-R~I~~~k~r~l~w---R~~rPylLadrved~~~~~~i~~~~~~~gtl~V 276 (1068)
+.|++..+ ++.. +++.....|.... +..-||.++..++.+... .++.+
T Consensus 159 gv~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~~~--------~~~~~-- 228 (301)
T 1wf3_A 159 QVAELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAER--------ENGVL-- 228 (301)
T ss_dssp HHHHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEEE--------TTTEE--
T ss_pred CHHHHHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEec--------CCCeE--
Confidence 34555444 4433 4444444443333 334499999998887421 13556
Q ss_pred EEEEEeeee--cCCcEEEEecCCCeeEEeeecCC
Q 046721 277 YGYLRGCNL--KKGTKVHIAGAGDYSLAGVTGLA 308 (1068)
Q Consensus 277 tGyVRG~~L--~~nqlVhIpG~GdfqIk~I~~~~ 308 (1068)
++.+.++ +.+|+-+|+|.||-+|++|+..+
T Consensus 229 --~i~~~i~ve~~~~k~iiig~~g~~lk~i~~~a 260 (301)
T 1wf3_A 229 --YIKAILYVERPSQKAIVIGEGGRKIKEIGQAT 260 (301)
T ss_dssp --EEEEEEEESSHHHHHHHHCGGGHHHHHHHHHH
T ss_pred --EEEEEEEEeeCCceEEEEeCCchHHHHHHHHH
Confidence 4556555 88999999999999999998654
No 8
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.78 E-value=3.1e-18 Score=198.07 Aligned_cols=223 Identities=21% Similarity=0.255 Sum_probs=152.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccC----C--C--------CceeccEE------EEeCCCeeEEEEeCCC--Ch
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKL----K--V--------PEVRGPVT------VVSGKKRRLQFVECPN--DI 131 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~----~--~--------~tt~~~It------i~~~~k~rl~fIDtPG--dl 131 (1068)
.+...|+|+|++|+|||||+++|++..... . . .+...++| .+.....+++|+|||| ++
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 345789999999999999999999841100 0 0 00011222 1234568999999999 44
Q ss_pred h-HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccccc--CCC
Q 046721 132 N-GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELY--HGA 208 (1068)
Q Consensus 132 ~-smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~--~~~ 208 (1068)
. .|+..+..||++|||+|++.+...++.+++..+...|+|.+|+|+||+|+..+...+..+...+...+....+ ...
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEV 168 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTS
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCC
Confidence 4 4888899999999999999999889999999999999998889999999985434344444444444432222 247
Q ss_pred eEEEEecccCCcCC-c------------hhhcchHHHHHHhhcccccccccCCe-EEEEeEEecCCCccccccCCCCceE
Q 046721 209 KLFKLSGLIQGKYT-K------------KDIGNLAEFISVMKFHSLSWRTSHPY-ILVDRFEDVTPPERVHVNNKCDRNV 274 (1068)
Q Consensus 209 kVf~ISAl~g~~y~-~------------~ei~nLlR~I~~~k~r~l~wR~~rPy-lLadrved~~~~~~i~~~~~~~gtl 274 (1068)
++|++||++|.... . ..+..|+..|....+.+.. ....|+ +.++++..++ ..|+
T Consensus 169 ~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~-~~~~p~~~~v~~v~~~~----------~~G~- 236 (405)
T 2c78_A 169 PVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVR-DVDKPFLMPVEDVFTIT----------GRGT- 236 (405)
T ss_dssp CEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCC-CCSSCCEEECCEEEEET----------TTEE-
T ss_pred CEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCC-CCCCCcEEEEEEEEEcC----------CCce-
Confidence 89999999762100 0 1155677777665554432 223454 4445554442 2355
Q ss_pred EEEEEEEeeeecCCcEEEEecCCC----eeEEeeecCC
Q 046721 275 AIYGYLRGCNLKKGTKVHIAGAGD----YSLAGVTGLA 308 (1068)
Q Consensus 275 ~VtGyVRG~~L~~nqlVhIpG~Gd----fqIk~I~~~~ 308 (1068)
+++|.|..+.|++|+.|.+.+.|+ .+|++|....
T Consensus 237 v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~ 274 (405)
T 2c78_A 237 VATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR 274 (405)
T ss_dssp EEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETT
T ss_pred EEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECC
Confidence 588999999999999999988874 6788887543
No 9
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.77 E-value=2.2e-18 Score=199.60 Aligned_cols=213 Identities=21% Similarity=0.268 Sum_probs=143.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEE---------Ee----------------CC----CeeEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTV---------VS----------------GK----KRRLQF 124 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti---------~~----------------~~----k~rl~f 124 (1068)
.+...|+|+|++++|||||+++|++........+...++|+ .. +. ...++|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 45689999999999999999999976432211111111221 00 00 268999
Q ss_pred EeCCC--Chh-HHHHHHHhcCEEEEEEeCCCCC-chhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHh
Q 046721 125 VECPN--DIN-GMIDCAKFADLALLLIDASHGF-EMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRF 200 (1068)
Q Consensus 125 IDtPG--dl~-smld~akvADlVLlVIDas~g~-e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~ 200 (1068)
||||| ++. .|+..+..+|++|||+|++.++ ..++.+++..+...|++++|+|+||+|+.... ........+++++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~-~~~~~~~~i~~~l 164 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK-QAEENYEQIKEFV 164 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT-TTTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH-HHHHHHHHHHHHH
Confidence 99999 344 3777788999999999999987 78899999888888987799999999998632 1112233344444
Q ss_pred cccccCCCeEEEEecccCCcCCchhhcchHHHHHHhhcccccccccCCeEEEEeEEecCCCccccccCCCCceEEEEEEE
Q 046721 201 GTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWRTSHPYILVDRFEDVTPPERVHVNNKCDRNVAIYGYL 280 (1068)
Q Consensus 201 ~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR~~rPylLadrved~~~~~~i~~~~~~~gtl~VtGyV 280 (1068)
........++|++||++| ..+..|...|....+.+..+....+.+.++++.++..|... . .+..|+ +++|.|
T Consensus 165 ~~~~~~~~~~i~vSA~~g-----~gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~-~-~~~~G~-v~~g~v 236 (408)
T 1s0u_A 165 KGTIAENAPIIPISAHHE-----ANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTE-I-KDLKGG-VLGGAI 236 (408)
T ss_dssp TTSTTTTCCEEEC-----------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCSSCC-G-GGCCCC-EEEEEE
T ss_pred hhcCCCCCeEEEeeCCCC-----CCHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEeecCCCcc-c-ccCcee-EEEEEE
Confidence 433445789999999965 66778888887766655555555567778887777543210 0 111344 589999
Q ss_pred EeeeecCCcEEEE-ec
Q 046721 281 RGCNLKKGTKVHI-AG 295 (1068)
Q Consensus 281 RG~~L~~nqlVhI-pG 295 (1068)
..+.|++|+.|.+ ||
T Consensus 237 ~~G~l~~gd~v~~~p~ 252 (408)
T 1s0u_A 237 IQGVFKVGDEIEIRPG 252 (408)
T ss_dssp EESCEETTCEEEEEEE
T ss_pred EECeEecCCEEEEcCC
Confidence 9999999999987 54
No 10
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.76 E-value=5.9e-17 Score=189.56 Aligned_cols=220 Identities=20% Similarity=0.191 Sum_probs=144.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc---c------------------------CCCCc-eeccEEE------EeCCC
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT---K------------------------LKVPE-VRGPVTV------VSGKK 119 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~---~------------------------~~~~t-t~~~Iti------~~~~k 119 (1068)
.+...|+|+|++|+|||||+++|++... . ....+ ...++|+ +...+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 3567999999999999999999966410 0 01111 1123443 33457
Q ss_pred eeEEEEeCCC--Chh-HHHHHHHhcCEEEEEEeCCCCCc-------hhHHHHHHHHHhCCCCcEEEEEeCCCcCC---cH
Q 046721 120 RRLQFVECPN--DIN-GMIDCAKFADLALLLIDASHGFE-------METFEFLNLMQNHGLPNVMGVLTHLDKFT---DK 186 (1068)
Q Consensus 120 ~rl~fIDtPG--dl~-smld~akvADlVLlVIDas~g~e-------~~t~eiL~~L~~~GlP~vIvVLNKiDlvk---~~ 186 (1068)
.+++|+|||| ++. .|+..+..||++|||+|++.+.. .++.+++..+...|+|++|+|+||+|+.. ..
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~ 174 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 174 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHH
Confidence 7999999999 344 48889999999999999998864 58889999999999998999999999964 12
Q ss_pred HHHHHHHHHHHHHhccccc---CCCeEEEEecccCCcCCc-hh------hcchHHHHHHhhcccccccccCCeEEE-EeE
Q 046721 187 KKLRKTKQHLKHRFGTELY---HGAKLFKLSGLIQGKYTK-KD------IGNLAEFISVMKFHSLSWRTSHPYILV-DRF 255 (1068)
Q Consensus 187 k~l~~vkk~Lk~~~~~e~~---~~~kVf~ISAl~g~~y~~-~e------i~nLlR~I~~~k~r~l~wR~~rPylLa-drv 255 (1068)
..+..+.+.+..++....+ ...+++++||++|..... .+ ...|+.+|.. .+.+. .....|+.+. +.+
T Consensus 175 ~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~-i~~~~-~~~~~p~r~~v~~~ 252 (439)
T 3j2k_7 175 ERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDN-LPNFN-RSVDGPIRLPIVDK 252 (439)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHh-CCCCc-cCCCCCeEEEEEEE
Confidence 3345555555554432222 256899999998732111 00 0114455533 22221 1233455443 222
Q ss_pred EecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecC-CCeeEEeeecCC
Q 046721 256 EDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGA-GDYSLAGVTGLA 308 (1068)
Q Consensus 256 ed~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~-GdfqIk~I~~~~ 308 (1068)
+ ++.|+ +++|.|..+.|++|+.|.+.+. ...+|++|....
T Consensus 253 --~----------~~~G~-v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~~ 293 (439)
T 3j2k_7 253 --Y----------KDMGT-VVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDD 293 (439)
T ss_pred --E----------cCCCe-EEEEEEEeeEEecCCEEEEccCCceEEEEEEEECC
Confidence 1 12455 4899999999999999986544 467888887643
No 11
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.75 E-value=2.6e-17 Score=207.37 Aligned_cols=226 Identities=20% Similarity=0.251 Sum_probs=156.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcccc------------C-CCCceeccEEE------EeCCCeeEEEEeCCC--Chh
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTK------------L-KVPEVRGPVTV------VSGKKRRLQFVECPN--DIN 132 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~------------~-~~~tt~~~Iti------~~~~k~rl~fIDtPG--dl~ 132 (1068)
.+...|+|+|++|+|||||+++|++.... . ...+...++|+ +...+.+++|||||| ++.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 45688999999999999999999985210 0 01111223443 234568999999999 444
Q ss_pred -HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccccc--CCCe
Q 046721 133 -GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELY--HGAK 209 (1068)
Q Consensus 133 -smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~--~~~k 209 (1068)
.|+..+..||++|||+|++.+...++.+++..+...|+|.+|+|+||+|+..+...+..+...+...+....+ ...+
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp 453 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTP 453 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccccccee
Confidence 3788889999999999999999999999999888899998889999999986444344444445444433222 3578
Q ss_pred EEEEecccCCcCC---chhhcchHHHHHHhhcccccccccCCe-EEEEeEEecCCCccccccCCCCceEEEEEEEEeeee
Q 046721 210 LFKLSGLIQGKYT---KKDIGNLAEFISVMKFHSLSWRTSHPY-ILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNL 285 (1068)
Q Consensus 210 Vf~ISAl~g~~y~---~~ei~nLlR~I~~~k~r~l~wR~~rPy-lLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L 285 (1068)
++++||++|..-. ...+..|+..|....+.+... ...|+ +.++++..++ ..|+ +++|.|..+.|
T Consensus 454 ~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r~-~d~Pfr~pId~Vf~i~----------G~Gt-VvtGrV~sGtL 521 (1289)
T 3avx_A 454 IVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERA-IDKPFLLPIEDVFSIS----------GRGT-VVTGRVERGII 521 (1289)
T ss_dssp EEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCCG-GGSCCEEECCEEEEET----------TTEE-EEEEECCBSEE
T ss_pred EEEEEeccCCCCCccccccchhhHhHHhhhcCCCccc-cccceeeecccccccc----------CCcE-EEEEEEeccEE
Confidence 9999999872100 034667777776655544332 23454 4455665542 2355 58999999999
Q ss_pred cCCcEEEEecCCC---eeEEeeecCCCCC
Q 046721 286 KKGTKVHIAGAGD---YSLAGVTGLADPC 311 (1068)
Q Consensus 286 ~~nqlVhIpG~Gd---fqIk~I~~~~DP~ 311 (1068)
++|+.|.|.|.|+ .+|++|.....|+
T Consensus 522 kvGD~V~I~ps~~~~~~kVksI~~~~~~v 550 (1289)
T 3avx_A 522 KVGEEVEIVGIKETQKSTCTGVEMFRKLL 550 (1289)
T ss_dssp ETTCEEEEESSSSCEEEEEEEEECSSCEE
T ss_pred ecCCEEEEecCCCceeEEEEEEeecCcee
Confidence 9999999988874 6889998765544
No 12
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.73 E-value=1.6e-18 Score=193.00 Aligned_cols=214 Identities=16% Similarity=0.226 Sum_probs=146.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCCh-hH-----------HHHHHH
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPNDI-NG-----------MIDCAK 139 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGdl-~s-----------mld~ak 139 (1068)
..+|+|||+||||||||+|+|++.. ++..+++++..+. ++.....+++|+||||.. .. +..++.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~ 87 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG 87 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHh
Confidence 4589999999999999999999973 3445556655444 555567899999999954 11 123457
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC-
Q 046721 140 FADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ- 218 (1068)
Q Consensus 140 vADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g- 218 (1068)
.||+++||+|++. ++..+..++..+...+.| +|+|+||+|+..+...+....+.+.+. .+...++++||+++
T Consensus 88 ~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P-~ilvlNK~D~~~~~~~~~~~l~~l~~~-----~~~~~~i~iSA~~g~ 160 (301)
T 1ega_A 88 DVELVIFVVEGTR-WTPDDEMVLNKLREGKAP-VILAVNKVDNVQEKADLLPHLQFLASQ-----MNFLDIVPISAETGL 160 (301)
T ss_dssp CEEEEEEEEETTC-CCHHHHHHHHHHHSSSSC-EEEEEESTTTCCCHHHHHHHHHHHHTT-----SCCSEEEECCTTTTT
T ss_pred cCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCC-EEEEEECcccCccHHHHHHHHHHHHHh-----cCcCceEEEECCCCC
Confidence 8999999999988 888888888888878899 788999999986334444444443322 23457999999876
Q ss_pred -----------------CcCCchhhcchH-HHHHHhhccccc---ccccCCeEEEEeEEecCCCccccccCCCCceEEEE
Q 046721 219 -----------------GKYTKKDIGNLA-EFISVMKFHSLS---WRTSHPYILVDRFEDVTPPERVHVNNKCDRNVAIY 277 (1068)
Q Consensus 219 -----------------~~y~~~ei~nLl-R~I~~~k~r~l~---wR~~rPylLadrved~~~~~~i~~~~~~~gtl~Vt 277 (1068)
+.|+...+++.. +++.....|... .....||.++..++.+.+. ..|++
T Consensus 161 ~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~~~~~~--------~~~~~--- 229 (301)
T 1ega_A 161 NVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSN--------ERGGY--- 229 (301)
T ss_dssp THHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEECC--------SSCSE---
T ss_pred CHHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEEEEec--------CCCeE---
Confidence 234333333332 333222223222 2345699988888877431 13455
Q ss_pred EEEEeeee--cCCcEEEEecCCCeeEEeeecCC
Q 046721 278 GYLRGCNL--KKGTKVHIAGAGDYSLAGVTGLA 308 (1068)
Q Consensus 278 GyVRG~~L--~~nqlVhIpG~GdfqIk~I~~~~ 308 (1068)
++....+ +.+|+.+|.|.+|-.|++|+..+
T Consensus 230 -~i~~~i~v~~~~~k~i~ig~~G~~~k~ig~~a 261 (301)
T 1ega_A 230 -DINGLILVEREGQKKMVIGNKGAKIKTIGIEA 261 (301)
T ss_dssp -EEEEEEEESSHHHHHHHHCGGGHHHHHHHHHH
T ss_pred -EEEEEEEEEECCceEEEECCCcHHHHHHHHHH
Confidence 3445544 77899999999999999998643
No 13
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.72 E-value=3.7e-16 Score=184.78 Aligned_cols=226 Identities=18% Similarity=0.204 Sum_probs=145.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcccc----------------------------CCCCceeccEE------EEeCCCe
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTK----------------------------LKVPEVRGPVT------VVSGKKR 120 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~----------------------------~~~~tt~~~It------i~~~~k~ 120 (1068)
+...|+|+|++|+|||||+++|++.... ........++| .+...+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 4578999999999999999999865100 00000001222 2345678
Q ss_pred eEEEEeCCC--Chh-HHHHHHHhcCEEEEEEeCCCC-------CchhHHHHHHHHHhCCCCcEEEEEeCCCcCCc-HHHH
Q 046721 121 RLQFVECPN--DIN-GMIDCAKFADLALLLIDASHG-------FEMETFEFLNLMQNHGLPNVMGVLTHLDKFTD-KKKL 189 (1068)
Q Consensus 121 rl~fIDtPG--dl~-smld~akvADlVLlVIDas~g-------~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~-~k~l 189 (1068)
+++|+|||| ++. .++..+..||++|||+|++.+ +..++.+++.++...|++++|+|+||+|+... ...+
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~ 191 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRF 191 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHH
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHH
Confidence 999999999 344 488899999999999999987 55688899999999998889999999999862 3445
Q ss_pred HHHHHHHHHHhccccc--CCCeEEEEecccCCcCC-------------chhhcchHHHHHHhhcc-cccccccCCe-EEE
Q 046721 190 RKTKQHLKHRFGTELY--HGAKLFKLSGLIQGKYT-------------KKDIGNLAEFISVMKFH-SLSWRTSHPY-ILV 252 (1068)
Q Consensus 190 ~~vkk~Lk~~~~~e~~--~~~kVf~ISAl~g~~y~-------------~~ei~nLlR~I~~~k~r-~l~wR~~rPy-lLa 252 (1068)
..+.+.+...+....+ ...++|++||++|.... ...+..++..+....+. +.......|+ +.+
T Consensus 192 ~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r~~v 271 (483)
T 3p26_A 192 EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSV 271 (483)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCEEEE
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceEEEE
Confidence 5555565555432222 25789999999873221 11233333333222221 0111233455 445
Q ss_pred EeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCC-CeeEEeeecCC
Q 046721 253 DRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAG-DYSLAGVTGLA 308 (1068)
Q Consensus 253 drved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~G-dfqIk~I~~~~ 308 (1068)
+.+..+.. +...|+ +++|.|..+.|++|+.|.+...| ...|++|....
T Consensus 272 ~~v~~~~~-------~~g~g~-v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~ 320 (483)
T 3p26_A 272 LEIIPSKK-------TSNDLA-LVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGS 320 (483)
T ss_dssp EEEEC----------CCSCCE-EEEEEEEESEECTTCEEEEETTTEEEEEEEEEETT
T ss_pred EEEEccCC-------cCCCce-EEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcC
Confidence 55544321 012355 48999999999999999875544 56899998763
No 14
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.72 E-value=8e-17 Score=195.50 Aligned_cols=228 Identities=19% Similarity=0.226 Sum_probs=148.9
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccccCC-------------CC---------------ceeccEE------EEeCC
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYTKLK-------------VP---------------EVRGPVT------VVSGK 118 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~-------------~~---------------tt~~~It------i~~~~ 118 (1068)
..++..|+|||++|+|||||+|+|++...... .. ....++| .+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 45678999999999999999999996521000 00 0001222 23445
Q ss_pred CeeEEEEeCCC--Chh-HHHHHHHhcCEEEEEEeCCCC-------CchhHHHHHHHHHhCCCCcEEEEEeCCCcCCc-HH
Q 046721 119 KRRLQFVECPN--DIN-GMIDCAKFADLALLLIDASHG-------FEMETFEFLNLMQNHGLPNVMGVLTHLDKFTD-KK 187 (1068)
Q Consensus 119 k~rl~fIDtPG--dl~-smld~akvADlVLlVIDas~g-------~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~-~k 187 (1068)
+.+++|||||| ++. .++..+..||++|||||++.| +..++.+++..+...|+|++|+|+||+|+... ..
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence 78999999999 444 477788999999999999876 45688899999999999989999999999862 34
Q ss_pred HHHHHHHHHHHHhccccc--CCCeEEEEecccCCcCCch-h---------hcchHHHHHHhhccc----ccccccCCe-E
Q 046721 188 KLRKTKQHLKHRFGTELY--HGAKLFKLSGLIQGKYTKK-D---------IGNLAEFISVMKFHS----LSWRTSHPY-I 250 (1068)
Q Consensus 188 ~l~~vkk~Lk~~~~~e~~--~~~kVf~ISAl~g~~y~~~-e---------i~nLlR~I~~~k~r~----l~wR~~rPy-l 250 (1068)
.+..+...+...+..... ...++|++||++|.....- . ...|+.+|....... .......|+ +
T Consensus 324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r~ 403 (611)
T 3izq_1 324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLF 403 (611)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCEE
T ss_pred HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchhh
Confidence 455555666555432222 2578999999987321110 0 013445553331110 111233455 3
Q ss_pred EEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCC-CeeEEeeecCC
Q 046721 251 LVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAG-DYSLAGVTGLA 308 (1068)
Q Consensus 251 Ladrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~G-dfqIk~I~~~~ 308 (1068)
.++.+..+.. +...|++ ++|.|..+.+++|+.|.|.+.| ...|++|....
T Consensus 404 ~V~~v~~~~~-------~~g~g~v-~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~ 454 (611)
T 3izq_1 404 SVLEIIPSKK-------TSNDLAL-VSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGS 454 (611)
T ss_dssp ECCEEECCSS-------SCSSSSE-EEEEEEESEECTTCEEEETTTTEEEEEEEEECSS
T ss_pred heeeeeccCc-------cCCCeeE-EEEEEEeceeccCCEEEEecCCceEEEEEEEEcc
Confidence 4445443321 0124554 8999999999999999986554 56799998763
No 15
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.72 E-value=1.4e-16 Score=187.23 Aligned_cols=220 Identities=20% Similarity=0.192 Sum_probs=147.9
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcccc---------------------------CCCC-ceeccEE------EEeCCCe
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTK---------------------------LKVP-EVRGPVT------VVSGKKR 120 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~---------------------------~~~~-tt~~~It------i~~~~k~ 120 (1068)
++..|+|+|++|+|||||+++|++.... .... +...++| .+.....
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 4578999999999999999999874100 0000 0011233 2344578
Q ss_pred eEEEEeCCC--ChhH-HHHHHHhcCEEEEEEeCCCCCch-------hHHHHHHHHHhCCCCcEEEEEeCCCcCC-cHHHH
Q 046721 121 RLQFVECPN--DING-MIDCAKFADLALLLIDASHGFEM-------ETFEFLNLMQNHGLPNVMGVLTHLDKFT-DKKKL 189 (1068)
Q Consensus 121 rl~fIDtPG--dl~s-mld~akvADlVLlVIDas~g~e~-------~t~eiL~~L~~~GlP~vIvVLNKiDlvk-~~k~l 189 (1068)
+++|||||| ++.. |+..+..||++|||+|++.+..+ ++.+++..+...|+|++|+|+||+|+.. +...+
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~ 165 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRF 165 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHH
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHH
Confidence 999999999 4544 78888999999999999977544 7778888888899988999999999984 33445
Q ss_pred HHHHHHHHHHhccccc--CCCeEEEEecccCCcCCch----h---------------hcchHHHHHHhhcccccccccCC
Q 046721 190 RKTKQHLKHRFGTELY--HGAKLFKLSGLIQGKYTKK----D---------------IGNLAEFISVMKFHSLSWRTSHP 248 (1068)
Q Consensus 190 ~~vkk~Lk~~~~~e~~--~~~kVf~ISAl~g~~y~~~----e---------------i~nLlR~I~~~k~r~l~wR~~rP 248 (1068)
..+...+...+....+ ...+++++||++|...... . ...|+..|.. .+.+.. ....|
T Consensus 166 ~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~~~p~~-~~~~p 243 (458)
T 1f60_A 166 QEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSR-PTDKP 243 (458)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-SCCCCC-CTTSC
T ss_pred HHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-cCCCcc-cCCCC
Confidence 5555555554432222 1478999999987321100 0 1246666643 222222 22334
Q ss_pred e-EEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCC-CeeEEeeecC
Q 046721 249 Y-ILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAG-DYSLAGVTGL 307 (1068)
Q Consensus 249 y-lLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~G-dfqIk~I~~~ 307 (1068)
. +.++.+..++ ..|+ +++|.|..+.+++|+.|.|.+.| ...|++|...
T Consensus 244 ~r~~i~~v~~~~----------g~G~-v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~ 293 (458)
T 1f60_A 244 LRLPLQDVYKIG----------GIGT-VPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMH 293 (458)
T ss_dssp CEEEEEEEEEET----------TTEE-EEEEECCBSCBCTTCEEEEETTTEEEEEEEEEET
T ss_pred cEEEEEEEEEeC----------CCcE-EEEEEEeCCeEcCCCEEEECCCCceEEEeEEEEC
Confidence 3 5666665542 2455 58999999999999999876554 6788888754
No 16
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.71 E-value=1.7e-16 Score=181.75 Aligned_cols=210 Identities=18% Similarity=0.174 Sum_probs=145.2
Q ss_pred EEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCC--Chh-HHHHHHHhcCEEEEEEeCCCCC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPN--DIN-GMIDCAKFADLALLLIDASHGF 154 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPG--dl~-smld~akvADlVLlVIDas~g~ 154 (1068)
+|+++|++|+|||||+++|+.... +.. -....+...+.+++|||||| ++. .|+..+..||++|||+| +.++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~gi--Ti~---~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~ 96 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKKGT--SSD---ITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGL 96 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEEEE--ESS---SEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCE--EEE---eeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCC
Confidence 899999999999999999982211 000 01112334567899999999 454 58889999999999999 9999
Q ss_pred chhHHHHHHHHHhCCCCcEEEEEe-CCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEE--EecccCCcCCchhhcchHH
Q 046721 155 EMETFEFLNLMQNHGLPNVMGVLT-HLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFK--LSGLIQGKYTKKDIGNLAE 231 (1068)
Q Consensus 155 e~~t~eiL~~L~~~GlP~vIvVLN-KiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~--ISAl~g~~y~~~ei~nLlR 231 (1068)
..++.+++..+...|+|.+|+|+| |+|+ . ...+..+.+.++.++........++|+ +||+++. ...++..|..
T Consensus 97 ~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~-~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~--~g~gi~~L~~ 172 (370)
T 2elf_A 97 DAHTGECIIALDLLGFKHGIIALTRSDST-H-MHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKN--PFEGVDELKA 172 (370)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEECCGGGS-C-HHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSS--TTTTHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCeEEEEEEeccCC-C-HHHHHHHHHHHHHHHHhcCCCceEEEecccccccCc--CCCCHHHHHH
Confidence 999999999999999996688999 9999 4 444555566666665443345679999 9999721 1355666665
Q ss_pred HHHHhhcccccc-c--ccCC-eEEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCC-CeeEEeeec
Q 046721 232 FISVMKFHSLSW-R--TSHP-YILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAG-DYSLAGVTG 306 (1068)
Q Consensus 232 ~I~~~k~r~l~w-R--~~rP-ylLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~G-dfqIk~I~~ 306 (1068)
.|....+.+..- . ...| .++++++..++ ..|++ ++|.|..+.+++|+.|.+...| ...|++|..
T Consensus 173 ~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~----------~~G~v-~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~ 241 (370)
T 2elf_A 173 RINEVAEKIEAENAELNSLPARIFIDHAFNVT----------GKGCV-VLGVVKQGISKDKDKTKIFPLDRDIEIRSIQS 241 (370)
T ss_dssp HHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC-------------CE-EEEEEEESEEETTCEEEEETTTEEEEEEEEEE
T ss_pred HHHhhccccccCCcccccccccccceeEEEcC----------CCceE-EEEEEECCEEeeCCEEEECCCCcEEEEeEEEE
Confidence 555443321000 0 1112 34456665542 24554 8899999999999998876655 668888876
Q ss_pred CC
Q 046721 307 LA 308 (1068)
Q Consensus 307 ~~ 308 (1068)
..
T Consensus 242 ~~ 243 (370)
T 2elf_A 242 HD 243 (370)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 17
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.70 E-value=5.5e-16 Score=180.97 Aligned_cols=222 Identities=17% Similarity=0.168 Sum_probs=145.3
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccc---cC----------CCCcee-----------------ccEE------EEeCC
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYT---KL----------KVPEVR-----------------GPVT------VVSGK 118 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~---~~----------~~~tt~-----------------~~It------i~~~~ 118 (1068)
+...|+|+|++|+|||||+++|++... .. ...++. .++| .+...
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 457899999999999999999987521 00 111110 1222 13345
Q ss_pred CeeEEEEeCCC--Chh-HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCc-HHHHHHHHH
Q 046721 119 KRRLQFVECPN--DIN-GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTD-KKKLRKTKQ 194 (1068)
Q Consensus 119 k~rl~fIDtPG--dl~-smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~-~k~l~~vkk 194 (1068)
..+++|+|||| ++. .++..+..||++|||+|++.++..++.+++.++...|+|++|+|+||+|+... ...+..+..
T Consensus 103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~ 182 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKA 182 (434)
T ss_dssp SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHH
T ss_pred CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHH
Confidence 77899999999 444 47888999999999999999998899999988888999889999999999852 334445555
Q ss_pred HHHHHhcccc--cCCCeEEEEecccCCcCCch-------hhcchHHHHHHhhcccccccccCCeEEE-EeEEecCCCccc
Q 046721 195 HLKHRFGTEL--YHGAKLFKLSGLIQGKYTKK-------DIGNLAEFISVMKFHSLSWRTSHPYILV-DRFEDVTPPERV 264 (1068)
Q Consensus 195 ~Lk~~~~~e~--~~~~kVf~ISAl~g~~y~~~-------ei~nLlR~I~~~k~r~l~wR~~rPylLa-drved~~~~~~i 264 (1068)
.+...+.... ....++|++||++|.....- ....|..+|... +.+.. ....|+.+. +.+....
T Consensus 183 ~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~i-~~~~~-~~~~~~~~~v~~v~~~~----- 255 (434)
T 1zun_B 183 DYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILETV-EIASD-RNYTDLRFPVQYVNRPN----- 255 (434)
T ss_dssp HHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHHS-CCTTC-CCSSSCEEECCEEECSS-----
T ss_pred HHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHHhcC-CCccc-CCCCCcEEEEEEEeccC-----
Confidence 5555443322 23478999999987221100 001244555332 22221 223455443 3332221
Q ss_pred cccCCCCceEEEEEEEEeeeecCCcEEEEecCC-CeeEEeeecCCC
Q 046721 265 HVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAG-DYSLAGVTGLAD 309 (1068)
Q Consensus 265 ~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~G-dfqIk~I~~~~D 309 (1068)
..++. ++|.|..+.|++|+.|.+.+.| ...|++|.....
T Consensus 256 -----~~~~g-~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~ 295 (434)
T 1zun_B 256 -----LNFRG-FAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEG 295 (434)
T ss_dssp -----SSCCE-EEEECCBSCEETTCEEEETTTCCEEEEEEEEETTE
T ss_pred -----CCceE-EEEEEecceEeCCCEEEEecCCeEEEEEEEEEcCc
Confidence 12333 6799999999999999986654 678999987643
No 18
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.68 E-value=7.4e-16 Score=179.96 Aligned_cols=220 Identities=20% Similarity=0.264 Sum_probs=145.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc---ccCC-------------------------CCceeccEEE------EeCCCe
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY---TKLK-------------------------VPEVRGPVTV------VSGKKR 120 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~-------------------------~~tt~~~Iti------~~~~k~ 120 (1068)
+.+.|+++|++|+|||||+++|+... .... ..+....+|+ +.....
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 45789999999999999999998641 0000 0000122332 334578
Q ss_pred eEEEEeCCC--ChhH-HHHHHHhcCEEEEEEeCCCC-------CchhHHHHHHHHHhCCCCcEEEEEeCCCcCCc---HH
Q 046721 121 RLQFVECPN--DING-MIDCAKFADLALLLIDASHG-------FEMETFEFLNLMQNHGLPNVMGVLTHLDKFTD---KK 187 (1068)
Q Consensus 121 rl~fIDtPG--dl~s-mld~akvADlVLlVIDas~g-------~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~---~k 187 (1068)
+++|+|||| ++.. |+..+..||++|||+|++.+ +..++.+++..+...|+|++|+|+||+|+... ..
T Consensus 85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~ 164 (435)
T 1jny_A 85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEK 164 (435)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHH
T ss_pred EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHH
Confidence 899999999 4544 78888999999999999988 77788899998888999888999999999862 33
Q ss_pred HHHHHHHHHHHHhccccc--CCCeEEEEecccCCcCCchh----h---cchHHHHHHhhcccccccccCCe-EEEEeEEe
Q 046721 188 KLRKTKQHLKHRFGTELY--HGAKLFKLSGLIQGKYTKKD----I---GNLAEFISVMKFHSLSWRTSHPY-ILVDRFED 257 (1068)
Q Consensus 188 ~l~~vkk~Lk~~~~~e~~--~~~kVf~ISAl~g~~y~~~e----i---~nLlR~I~~~k~r~l~wR~~rPy-lLadrved 257 (1068)
.+..+.+.++..+....+ ...+++++||++|....+.. + ..|+..|... +.+.. ....|. +.++++..
T Consensus 165 ~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~~-~~p~~-~~~~~~~~~v~~v~~ 242 (435)
T 1jny_A 165 RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQL-ELPPK-PVDKPLRIPIQDVYS 242 (435)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTTC-CCCCC-GGGSCCBEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhcc-CCCCC-CCCCCeEEEEEEEEE
Confidence 445556666655533222 24789999999873211100 0 1456665432 22222 112343 44555555
Q ss_pred cCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCC-CeeEEeeecC
Q 046721 258 VTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAG-DYSLAGVTGL 307 (1068)
Q Consensus 258 ~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~G-dfqIk~I~~~ 307 (1068)
++ ..|+ +++|.|..+.|++|+.|.+.+.| ...|++|...
T Consensus 243 ~~----------~~G~-v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~ 282 (435)
T 1jny_A 243 IS----------GVGT-VPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETH 282 (435)
T ss_dssp ET----------TTEE-EEEEECCBSCEETTCEEEEETTTEEEEEEEEEET
T ss_pred eC----------CCcE-EEEEEEecCeEEcCCEEEECCceeEEEEEEEEEC
Confidence 42 2455 48899999999999999876544 5677888654
No 19
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.68 E-value=3.7e-16 Score=184.17 Aligned_cols=218 Identities=18% Similarity=0.228 Sum_probs=136.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc---c------------------------cCC-CCceeccEEE------EeCCCe
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY---T------------------------KLK-VPEVRGPVTV------VSGKKR 120 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~---~------------------------~~~-~~tt~~~Iti------~~~~k~ 120 (1068)
+...|+|+|++|+|||||+++|+... . ... ..+...++|+ +...+.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 45789999999999999999997521 0 000 0001123443 233578
Q ss_pred eEEEEeCCC--Chh-HHHHHHHhcCEEEEEEeCCCCCc-------hhHHHHHHHHHhCCCCcEEEEEeCCCcCC---cHH
Q 046721 121 RLQFVECPN--DIN-GMIDCAKFADLALLLIDASHGFE-------METFEFLNLMQNHGLPNVMGVLTHLDKFT---DKK 187 (1068)
Q Consensus 121 rl~fIDtPG--dl~-smld~akvADlVLlVIDas~g~e-------~~t~eiL~~L~~~GlP~vIvVLNKiDlvk---~~k 187 (1068)
+++|||||| ++. .|+..+..||++|||+|++.+.. .++.+++..+...|+|++|+|+||+|+.. +.+
T Consensus 122 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~ 201 (467)
T 1r5b_A 122 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEE 201 (467)
T ss_dssp EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHH
T ss_pred EEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHH
Confidence 999999999 444 38888999999999999998752 57888888888899998999999999963 234
Q ss_pred HHHHHHHHHHHHhccc-ccC---CCeEEEEecccCCcCCch---------hhcchHHHHHHhhcccccccccCCeEEE-E
Q 046721 188 KLRKTKQHLKHRFGTE-LYH---GAKLFKLSGLIQGKYTKK---------DIGNLAEFISVMKFHSLSWRTSHPYILV-D 253 (1068)
Q Consensus 188 ~l~~vkk~Lk~~~~~e-~~~---~~kVf~ISAl~g~~y~~~---------ei~nLlR~I~~~k~r~l~wR~~rPylLa-d 253 (1068)
.+..+...+...+... .+. ..++|++||++|.....- ....|+.+|.. .+.+.. ....|+.+. +
T Consensus 202 ~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~-i~~~~~-~~~~p~~~~v~ 279 (467)
T 1r5b_A 202 RYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDS-MTHLER-KVNAPFIMPIA 279 (467)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHH-CCCCHH-HHTSCCEEECC
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHh-CCCCcC-CCCCCcEEEEE
Confidence 4555555555555332 222 568999999987321100 00135555543 222211 123455433 3
Q ss_pred eEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCC-CeeEEeeecC
Q 046721 254 RFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAG-DYSLAGVTGL 307 (1068)
Q Consensus 254 rved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~G-dfqIk~I~~~ 307 (1068)
++.. ..|+ +++|.|..+.|++|+.|.|.+.| ...|++|...
T Consensus 280 ~~~~------------~~G~-v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~ 321 (467)
T 1r5b_A 280 SKYK------------DLGT-ILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDE 321 (467)
T ss_dssp EEEE------------SSSE-EEEEECCBSEEETTEEEEEETTTEEEEEEEEECT
T ss_pred EEEe------------CCCe-EEEEEEeeeEEeeCCEEEEccCCeeEEEEEEecc
Confidence 3211 1355 68999999999999999885554 5688888754
No 20
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.62 E-value=5.1e-15 Score=178.94 Aligned_cols=221 Identities=18% Similarity=0.219 Sum_probs=140.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCCC---CceeccEEEEeC------------------CCeeEEEEeCCC--Chh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLKV---PEVRGPVTVVSG------------------KKRRLQFVECPN--DIN 132 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~~---~tt~~~Iti~~~------------------~k~rl~fIDtPG--dl~ 132 (1068)
+++|+|+|++|+|||||+++|++....... .+..-..+.+.. ....++|+|||| +|.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 568999999999999999999986432110 000111111110 112599999999 455
Q ss_pred H-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcH----------------H----HHHH
Q 046721 133 G-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDK----------------K----KLRK 191 (1068)
Q Consensus 133 s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~----------------k----~l~~ 191 (1068)
. +...+..||++|||+|++.|+..++++.+..+...++| +|+|+||+|+.... . .+..
T Consensus 85 ~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vP-iIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e 163 (594)
T 1g7s_A 85 TLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT 163 (594)
T ss_dssp TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCe-EEEEecccccccccccccCCchHHHHHHhHHHHHHHHHH
Confidence 4 33456889999999999999999999999999999999 89999999996411 1 1111
Q ss_pred HHHHHHHHhcc------------cccCCCeEEEEecccCCcCCchhhcchHHHHHHhhcccc----cccccCCe-EEEEe
Q 046721 192 TKQHLKHRFGT------------ELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFHSL----SWRTSHPY-ILVDR 254 (1068)
Q Consensus 192 vkk~Lk~~~~~------------e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l----~wR~~rPy-lLadr 254 (1068)
....+...+.. .+....++|++||++| .++..|+..|....+.++ ......|. .++..
T Consensus 164 ~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG-----~GI~eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~~ 238 (594)
T 1g7s_A 164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG-----EGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILE 238 (594)
T ss_dssp HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC-----TTHHHHHHHHHHHHHHHCSGGGEECTTSBCEEEEEE
T ss_pred HHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCC-----CCchhHHHHHHhhccccchhhhccccCCCceeEEEE
Confidence 11122221111 1123458999999965 677777777765544322 22223343 33333
Q ss_pred EEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCCCeeEEeeecCCCCCCC
Q 046721 255 FEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAGDYSLAGVTGLADPCPL 313 (1068)
Q Consensus 255 ved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~GdfqIk~I~~~~DP~pl 313 (1068)
+... ...|+ +++|.|..+.|++|+.|.+.+.++....+|..+-.|.|+
T Consensus 239 ~~~d----------~g~G~-v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~ 286 (594)
T 1g7s_A 239 VKEE----------TGLGM-TIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPL 286 (594)
T ss_dssp EEEE----------TTEEE-EEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCC
T ss_pred EEEe----------CCcEE-EEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEecccc
Confidence 3222 11344 588999999999999999888776434445444444444
No 21
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.60 E-value=2.1e-14 Score=173.38 Aligned_cols=209 Identities=19% Similarity=0.209 Sum_probs=139.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc---cc-----CCCC----ceeccEEE-------E-e---CCCeeEEEEeCCC--C
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY---TK-----LKVP----EVRGPVTV-------V-S---GKKRRLQFVECPN--D 130 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~---~~-----~~~~----tt~~~Iti-------~-~---~~k~rl~fIDtPG--d 130 (1068)
.++|+|+|++|+|||||+++|+... .. .... +...++|+ . . +....++|||||| +
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 4689999999999999999998631 10 0000 01122332 1 1 1246899999999 4
Q ss_pred hhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCe
Q 046721 131 ING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAK 209 (1068)
Q Consensus 131 l~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~k 209 (1068)
|.. +...+..||++|||+|++.+.+.++..++..+...++| +|+|+||+|+.... ...+.+.+...+ ......
T Consensus 86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~~a~--~~~v~~el~~~l---g~~~~~ 159 (600)
T 2ywe_A 86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLPSAD--VDRVKKQIEEVL---GLDPEE 159 (600)
T ss_dssp GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTSTTCC--HHHHHHHHHHTS---CCCGGG
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCccccC--HHHHHHHHHHhh---CCCccc
Confidence 554 77788999999999999999999999888888889999 89999999997522 334445555443 112235
Q ss_pred EEEEecccCCcCCchhhcchHHHHHHhhcccccccccCCe-EEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCC
Q 046721 210 LFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWRTSHPY-ILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKG 288 (1068)
Q Consensus 210 Vf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR~~rPy-lLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~n 288 (1068)
+|++||++| .++..|+..|....+.+.. ....|. .++......+ ..| .+++|.|..+.|++|
T Consensus 160 vi~vSAktg-----~GI~~Lle~I~~~lp~p~~-~~~~pl~~lV~~~~~d~----------~~G-~v~~~rV~sG~l~~G 222 (600)
T 2ywe_A 160 AILASAKEG-----IGIEEILEAIVNRIPPPKG-DPQKPLKALIFDSYYDP----------YRG-AVAFVRIFDGEVKPG 222 (600)
T ss_dssp CEECBTTTT-----BSHHHHHHHHHHHSCCCCC-CTTSCCEEEEEEEEEET----------TTE-EEEEEEEEESEECTT
T ss_pred EEEEEeecC-----CCchHHHHHHHHhcccccc-cccCCcceeEEEEeecc----------cce-EEEEEEEEeCEEecC
Confidence 899999965 6677888888777765542 223454 2332222211 134 458899999999999
Q ss_pred cEEEEecCC-CeeEEeeecC
Q 046721 289 TKVHIAGAG-DYSLAGVTGL 307 (1068)
Q Consensus 289 qlVhIpG~G-dfqIk~I~~~ 307 (1068)
+.|.+...| .+.+.+|...
T Consensus 223 d~I~~~~~~~~~~v~~i~~~ 242 (600)
T 2ywe_A 223 DKIMLMSTGKEYEVTEVGAQ 242 (600)
T ss_dssp CEEEETTTTEEEECCEEEEE
T ss_pred CEEEeccccceEeeeccccc
Confidence 999887655 4566777653
No 22
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.59 E-value=2.4e-14 Score=173.13 Aligned_cols=209 Identities=17% Similarity=0.164 Sum_probs=137.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc---cc-----CCC----CceeccEEEE-----------eCCCeeEEEEeCCC--C
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY---TK-----LKV----PEVRGPVTVV-----------SGKKRRLQFVECPN--D 130 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~---~~-----~~~----~tt~~~Iti~-----------~~~k~rl~fIDtPG--d 130 (1068)
.++|+|+|++|+|||||+++|+... .. ... .+...++|+. .+....++|||||| +
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 4789999999999999999998731 10 000 0011223321 11246899999999 4
Q ss_pred hhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCe
Q 046721 131 ING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAK 209 (1068)
Q Consensus 131 l~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~k 209 (1068)
+.. +...+..||++|||+|++.+.+.++...+..+...++| +|+|+||+|+.... ...+.+.+.+.+ -.....
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~--~~~v~~ei~~~l---g~~~~~ 157 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDLPAAD--PERVAEEIEDIV---GIDATD 157 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTSTTCC--HHHHHHHHHHHT---CCCCTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCccccc--HHHHHHHHHHHh---CCCcce
Confidence 554 77788999999999999999999999888888889998 89999999997522 234445555444 112346
Q ss_pred EEEEecccCCcCCchhhcchHHHHHHhhcccccccccCCeE-EEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCC
Q 046721 210 LFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWRTSHPYI-LVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKG 288 (1068)
Q Consensus 210 Vf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR~~rPyl-Ladrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~n 288 (1068)
+|++||++| .++..|+..|....+.+.. ....|.. ++..+.+.+ ..|. +++|.|..+.|++|
T Consensus 158 vi~vSAktg-----~GI~~Ll~~I~~~lp~p~~-~~~~p~~alI~d~~~d~----------~~G~-v~~~rV~sG~l~~G 220 (599)
T 3cb4_D 158 AVRCSAKTG-----VGVQDVLERLVRDIPPPEG-DPEGPLQALIIDSWFDN----------YLGV-VSLIRIKNGTLRKG 220 (599)
T ss_dssp CEEECTTTC-----TTHHHHHHHHHHHSCCCCC-CTTSCCEEEEEEEEEET----------TTEE-EEEEEEEESCEESS
T ss_pred EEEeecccC-----CCchhHHHHHhhcCCCccc-cccCCceeeeeeccccc----------cccE-EEEEEEEeCEEecC
Confidence 899999965 6777888888777665542 2334542 332222211 2344 57888998889999
Q ss_pred cEEEEecCC-CeeEEeeecC
Q 046721 289 TKVHIAGAG-DYSLAGVTGL 307 (1068)
Q Consensus 289 qlVhIpG~G-dfqIk~I~~~ 307 (1068)
+.+.+...| .+.|.+|...
T Consensus 221 d~v~~~~~~~~~~v~~i~~~ 240 (599)
T 3cb4_D 221 DKVKVMSTGQTYNADRLGIF 240 (599)
T ss_dssp CEEEETTTCCEEECCEEEEE
T ss_pred CEEEeccccceeEEeeeeec
Confidence 999887665 3477777654
No 23
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.58 E-value=1.1e-14 Score=152.45 Aligned_cols=158 Identities=14% Similarity=0.126 Sum_probs=109.3
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc----ccCCCCceeccEEE-Ee-CCCeeEEEEeCCCCh------------hH---
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY----TKLKVPEVRGPVTV-VS-GKKRRLQFVECPNDI------------NG--- 133 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~----~~~~~~tt~~~Iti-~~-~~k~rl~fIDtPGdl------------~s--- 133 (1068)
..+.|+|+|.+|+|||||+|+|++.. +...+.++...... .. .....++|+||||-. ..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 35689999999999999999999873 22333333332221 22 346799999999920 11
Q ss_pred -HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccc----ccCCC
Q 046721 134 -MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTE----LYHGA 208 (1068)
Q Consensus 134 -mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e----~~~~~ 208 (1068)
.+..+..+|+||||+|++.++......++..+...++| +|+|+||+|+... ..+......+...+... .....
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~Dl~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKP-IHSLLTKCDKLTR-QESINALRATQKSLDAYRDAGYAGKL 185 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCC-EEEEEECGGGSCH-HHHHHHHHHHHHHHHHHHHHTCCSCE
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEeccccCCh-hhHHHHHHHHHHHHHhhhhcccCCCC
Confidence 23334558999999999998888888888988888998 8999999999863 33333333333333221 13577
Q ss_pred eEEEEecccCCcCCchhhcchHHHHHHhhcc
Q 046721 209 KLFKLSGLIQGKYTKKDIGNLAEFISVMKFH 239 (1068)
Q Consensus 209 kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r 239 (1068)
++|++||+++ .++..|...|....+.
T Consensus 186 ~~~~~SA~~g-----~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 186 TVQLFSALKR-----TGLDDAHALIESWLRP 211 (223)
T ss_dssp EEEEEBTTTT-----BSHHHHHHHHHHHHC-
T ss_pred eEEEeecCCC-----cCHHHHHHHHHHhcCc
Confidence 8999999965 6677777777655543
No 24
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.58 E-value=4.4e-14 Score=168.79 Aligned_cols=215 Identities=15% Similarity=0.170 Sum_probs=141.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc------------------ccC-------CCCceeccEEEEeCCCeeEEEEeCCC-
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY------------------TKL-------KVPEVRGPVTVVSGKKRRLQFVECPN- 129 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~------------------~~~-------~~~tt~~~Iti~~~~k~rl~fIDtPG- 129 (1068)
.++|+|||++|+|||||+|+|+... ... ...+.......+......++||||||
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 4789999999999999999997321 000 00011111122334578999999999
Q ss_pred -ChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccc---
Q 046721 130 -DING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTEL--- 204 (1068)
Q Consensus 130 -dl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~--- 204 (1068)
++.. +..++..||++|+|+|++.+...++..++..+...++| +|+|+||+|+.... ...+...+.+.+....
T Consensus 93 ~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iP-iivviNK~Dl~~~~--~~~~l~ei~~~l~~~~~~~ 169 (528)
T 3tr5_A 93 ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTP-IMTFINKMDRDTRP--SIELLDEIESILRIHCAPV 169 (528)
T ss_dssp TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCC-EEEEEECTTSCCSC--HHHHHHHHHHHHCCEEEES
T ss_pred hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEeCCCCcccc--HHHHHHHHHHhhCCCceee
Confidence 4444 77888999999999999999999999999999999999 79999999997421 2223333433331100
Q ss_pred ------------------------------------------------------------------------------cC
Q 046721 205 ------------------------------------------------------------------------------YH 206 (1068)
Q Consensus 205 ------------------------------------------------------------------------------~~ 206 (1068)
..
T Consensus 170 ~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~ 249 (528)
T 3tr5_A 170 TWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGE 249 (528)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHTTS
T ss_pred ecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhcCc
Confidence 01
Q ss_pred CCeEEEEecccCCcCCchhhcchHHHHHHhhcccccccc--------cCCeE-EEEeEEecCCCccccccCCCCceEEEE
Q 046721 207 GAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWRT--------SHPYI-LVDRFEDVTPPERVHVNNKCDRNVAIY 277 (1068)
Q Consensus 207 ~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR~--------~rPyl-Ladrved~~~~~~i~~~~~~~gtl~Vt 277 (1068)
..+||+.||++| .++..|+..|....+.|..... ..|++ ++-++...-+ +...|.| .+
T Consensus 250 ~~PV~~gSA~~~-----~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~d-------p~~~g~l-~~ 316 (528)
T 3tr5_A 250 LTPIFFGSAINN-----FGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMD-------PGHRDRI-AF 316 (528)
T ss_dssp EEEEEECBGGGT-----BSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC--------CCCCEE-EE
T ss_pred eeEEEeccccCC-----ccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccC-------ccCCceE-EE
Confidence 127899999965 6788888888888876653221 12332 2222221111 2123454 67
Q ss_pred EEEEeeeecCCcEEEEecCC-CeeEEeeec
Q 046721 278 GYLRGCNLKKGTKVHIAGAG-DYSLAGVTG 306 (1068)
Q Consensus 278 GyVRG~~L~~nqlVhIpG~G-dfqIk~I~~ 306 (1068)
+.|..+.|+.|+.|.....| ...|.+|..
T Consensus 317 ~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~ 346 (528)
T 3tr5_A 317 LRIASGQYQKGMKAYHVRLKKEIQINNALT 346 (528)
T ss_dssp EEEEESCEETTEEEEETTTTEEEEESSCBC
T ss_pred EEEecCeEcCCCEEEecCCCceEEEeeeEE
Confidence 78888889999999988776 345555443
No 25
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.57 E-value=4.2e-14 Score=169.67 Aligned_cols=121 Identities=19% Similarity=0.316 Sum_probs=90.8
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc-------------------ccCCCCceeccEEE------EeCCCeeEEEEeCCC--
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY-------------------TKLKVPEVRGPVTV------VSGKKRRLQFVECPN-- 129 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~-------------------~~~~~~tt~~~Iti------~~~~k~rl~fIDtPG-- 129 (1068)
++||||||.++|||||+.+|+... ......+...+||| +.+++.+|+||||||
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 689999999999999999997421 00011122344554 235789999999999
Q ss_pred ChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHh
Q 046721 130 DING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRF 200 (1068)
Q Consensus 130 dl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~ 200 (1068)
||.. +..++.++|.+|+||||..|++.+|..+++.+...++| .|+++||+|... .+...+...|++.|
T Consensus 112 DF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp-~i~fINK~Dr~~--ad~~~~~~~i~~~l 180 (548)
T 3vqt_A 112 DFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATP-VMTFVNKMDREA--LHPLDVMADIEQHL 180 (548)
T ss_dssp GCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCC-EEEEEECTTSCC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCc-eEEEEecccchh--cchhHhhhhhhhhc
Confidence 6665 99999999999999999999999999999999999999 688999999864 23445555555544
No 26
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.56 E-value=1.3e-15 Score=181.63 Aligned_cols=213 Identities=17% Similarity=0.151 Sum_probs=138.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccc--cCCCCceecc--EEEEeCCCeeEEEEeCCC--ChhH-HHHHHHhcCEEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYT--KLKVPEVRGP--VTVVSGKKRRLQFVECPN--DING-MIDCAKFADLALLL 147 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~--~~~~~tt~~~--Iti~~~~k~rl~fIDtPG--dl~s-mld~akvADlVLlV 147 (1068)
.|+.|+|+|++|+|||||+++|++... ......+... ..+......+++|||||| +|.. +...+..+|++|||
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 356899999999999999999998632 1111111111 111222456899999999 4555 45567899999999
Q ss_pred EeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHH--hcccccCCCeEEEEecccCCcCCchh
Q 046721 148 IDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHR--FGTELYHGAKLFKLSGLIQGKYTKKD 225 (1068)
Q Consensus 148 IDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~--~~~e~~~~~kVf~ISAl~g~~y~~~e 225 (1068)
+|++.+...++.+++..+...++| +|+|+||+|+.... ...+...+... +...+....++|++||++| ..
T Consensus 83 VDa~dg~~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~--~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG-----~G 154 (537)
T 3izy_P 83 VAADDGVMKQTVESIQHAKDAHVP-IVLAINKCDKAEAD--PEKVKKELLAYDVVCEDYGGDVQAVHVSALTG-----EN 154 (537)
T ss_dssp CBSSSCCCHHHHHHHHHHHTTTCC-EEECCBSGGGTTTS--CCSSSSHHHHTTSCCCCSSSSEEECCCCSSSS-----CS
T ss_pred EECCCCccHHHHHHHHHHHHcCCc-EEEEEecccccccc--hHHHHHHHHhhhhhHHhcCCCceEEEEECCCC-----CC
Confidence 999999999999999999999999 89999999987411 01111122211 1223334568999999976 55
Q ss_pred hcchHHHHHHhhcc-cccccccCCe-EEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCCCeeEEe
Q 046721 226 IGNLAEFISVMKFH-SLSWRTSHPY-ILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAGDYSLAG 303 (1068)
Q Consensus 226 i~nLlR~I~~~k~r-~l~wR~~rPy-lLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~GdfqIk~ 303 (1068)
+..|+..|...... +.......|. +.+.++... +..|+ +++|.|..+.|++|+.+ ++|....+|+.
T Consensus 155 I~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~----------~g~G~-V~~g~V~~G~l~~Gd~v-~~g~~~~kVr~ 222 (537)
T 3izy_P 155 MMALAEATIALAEMLELKADPTGAVEGTVIESFTD----------KGRGP-VTTAIIQRGTLRKGSIL-VAGKSWAKVRL 222 (537)
T ss_dssp SHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCC----------TTCCC-CEEEEEEEECCSSEEEE-CCSSCCEEEEE
T ss_pred chhHHHHHHHhhhcccccCCCCCCcceeEEEEEEe----------CCCce-EEEEEEecCEEEcCCEE-EeCCceEEEEE
Confidence 66677666544331 1111222343 333332211 22455 47889998889999986 56655567777
Q ss_pred eecC
Q 046721 304 VTGL 307 (1068)
Q Consensus 304 I~~~ 307 (1068)
|...
T Consensus 223 i~~~ 226 (537)
T 3izy_P 223 MFDE 226 (537)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 7643
No 27
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.55 E-value=3.1e-15 Score=177.20 Aligned_cols=208 Identities=18% Similarity=0.153 Sum_probs=133.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEE------EEeCCCeeEEEEeCCC--ChhH-HHHHHHhcCEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVT------VVSGKKRRLQFVECPN--DING-MIDCAKFADLAL 145 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~It------i~~~~k~rl~fIDtPG--dl~s-mld~akvADlVL 145 (1068)
.|++|+|+|++|+|||||+++|++...... . .+++| .+...+..++|+|||| +|.. +...+..||++|
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~--e-~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASG--E-AGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBT--T-BCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccc--c-CCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 467899999999999999999987532110 0 01122 1223467899999999 4544 455678999999
Q ss_pred EEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHH--HhcccccCCCeEEEEecccCCcCCc
Q 046721 146 LLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKH--RFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 146 lVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~--~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
||+|++.+...++.+++..+...++| +|+|+||+|+.... ...+...+.. .+...+....++|++||++|
T Consensus 80 LVVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~--~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG----- 151 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDKPEAD--PDRVKNELSQYGILPEEWGGESQFVHVSAKAG----- 151 (501)
T ss_dssp EEEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSSSTTC--CCCTTCCCCCCCCCTTCCSSSCEEEECCTTTC-----
T ss_pred EEeecccCccHHHHHHHHHHHhcCce-EEEEEEeccccccC--HHHHHHHHHHhhhhHHHhCCCccEEEEeeeec-----
Confidence 99999999999999999999999999 89999999997411 0111111100 01112223468999999966
Q ss_pred hhhcchHHHHHHhhc-ccccccccCCe-EEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCCCeeE
Q 046721 224 KDIGNLAEFISVMKF-HSLSWRTSHPY-ILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAGDYSL 301 (1068)
Q Consensus 224 ~ei~nLlR~I~~~k~-r~l~wR~~rPy-lLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~GdfqI 301 (1068)
..+..|+..|..... .........|. .++.+.... +..|+ +++|.|..+.|++|+.+.+.+. ..+|
T Consensus 152 ~gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d----------~g~G~-v~~~~V~~Gtlk~Gd~v~~g~~-~~kV 219 (501)
T 1zo1_I 152 TGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLD----------KGRGP-VATVLVREGTLHKGDIVLCGFE-YGRV 219 (501)
T ss_dssp TTCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEEC----------SSSSE-EEEEEEEESBCCTTCEEEEEBS-SCEE
T ss_pred cCcchhhhhhhhhhhhhccccccccccccceEEEEEe----------CCcEE-EEEEEEEeeEEecCCEEEEccc-eeEE
Confidence 566777776643211 11111122332 333332221 12344 5889999888999998876543 3356
Q ss_pred Eeee
Q 046721 302 AGVT 305 (1068)
Q Consensus 302 k~I~ 305 (1068)
+.|.
T Consensus 220 r~i~ 223 (501)
T 1zo1_I 220 RAMR 223 (501)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 6654
No 28
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.51 E-value=2.1e-13 Score=139.35 Aligned_cols=151 Identities=20% Similarity=0.253 Sum_probs=100.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc-cc---CCCCceeccEEEEeCCCeeEEEEeCCCC------------hhHHH-HH
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY-TK---LKVPEVRGPVTVVSGKKRRLQFVECPND------------INGMI-DC 137 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~-~~---~~~~tt~~~Iti~~~~k~rl~fIDtPGd------------l~sml-d~ 137 (1068)
.+..|+|+|.+|+|||||+|+|++.. .. ..+.++........ ..++.|+||||- +..++ ..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII--NDELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE--TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE--CCcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 45789999999999999999999873 21 22222222111112 347999999991 11222 22
Q ss_pred HH---hcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 138 AK---FADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 138 ak---vADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
+. .+|++|+|+|++.+.......++..+...++| +++|+||+|+.... .+......+.+.+. ...+.++|++|
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~S 175 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIP-VIVIATKADKIPKG-KWDKHAKVVRQTLN--IDPEDELILFS 175 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGG-GHHHHHHHHHHHHT--CCTTSEEEECC
T ss_pred HhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCChH-HHHHHHHHHHHHHc--ccCCCceEEEE
Confidence 33 44999999999988887777788888888888 89999999998642 33444445554442 22467899999
Q ss_pred cccCCcCCchhhcchHHHHHHh
Q 046721 215 GLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 215 Al~g~~y~~~ei~nLlR~I~~~ 236 (1068)
|+++ .++..+...|...
T Consensus 176 a~~~-----~gv~~l~~~l~~~ 192 (195)
T 1svi_A 176 SETK-----KGKDEAWGAIKKM 192 (195)
T ss_dssp TTTC-----TTHHHHHHHHHHH
T ss_pred ccCC-----CCHHHHHHHHHHH
Confidence 9865 5667777666543
No 29
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.51 E-value=1.4e-13 Score=139.82 Aligned_cols=150 Identities=20% Similarity=0.249 Sum_probs=102.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcccc---CCCCceeccEEEEeCCCeeEEEEeCCCC------------hhH----HHH
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTK---LKVPEVRGPVTVVSGKKRRLQFVECPND------------ING----MID 136 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~---~~~~tt~~~Iti~~~~k~rl~fIDtPGd------------l~s----mld 136 (1068)
.+.|+|+|.+|+|||||+|+|++.... ....++....... ...+++|+||||- +.. .+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL--VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFK 100 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE--ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE--ECCcEEEEECCCCccccCChhhHHHHHHHHHHHHh
Confidence 468999999999999999999987422 2222222211111 2457899999991 122 233
Q ss_pred HHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecc
Q 046721 137 CAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGL 216 (1068)
Q Consensus 137 ~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl 216 (1068)
.+..+|+|++|+|++.+.......++..+...++| +|+|+||+|+... ..+....+.+...+. .....++|++||+
T Consensus 101 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~ 176 (195)
T 3pqc_A 101 NRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIP-FTIVLTKMDKVKM-SERAKKLEEHRKVFS--KYGEYTIIPTSSV 176 (195)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCG-GGHHHHHHHHHHHHH--SSCCSCEEECCTT
T ss_pred cCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCC-EEEEEEChhcCCh-HHHHHHHHHHHHHHh--hcCCCceEEEecC
Confidence 34556999999999988877777888888888998 8999999999853 233444444444432 1245789999999
Q ss_pred cCCcCCchhhcchHHHHHHh
Q 046721 217 IQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 217 ~g~~y~~~ei~nLlR~I~~~ 236 (1068)
++ .++..+...|...
T Consensus 177 ~~-----~gv~~l~~~l~~~ 191 (195)
T 3pqc_A 177 TG-----EGISELLDLISTL 191 (195)
T ss_dssp TC-----TTHHHHHHHHHHH
T ss_pred CC-----CCHHHHHHHHHHH
Confidence 65 5667777666543
No 30
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.50 E-value=2.8e-15 Score=182.96 Aligned_cols=211 Identities=18% Similarity=0.223 Sum_probs=141.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc---c------------cCCCCceeccEEEE------eCCCeeEEEEeCCC--ChhH
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY---T------------KLKVPEVRGPVTVV------SGKKRRLQFVECPN--DING 133 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~---~------------~~~~~tt~~~Iti~------~~~k~rl~fIDtPG--dl~s 133 (1068)
++||||||.++|||||+.+|+... . .....+...+|||. .+++.+|+|||||| ||..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 689999999999999999997531 0 00111122356643 24678999999999 6665
Q ss_pred -HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccc--------
Q 046721 134 -MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTEL-------- 204 (1068)
Q Consensus 134 -mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~-------- 204 (1068)
+..++.++|.+|+||||..|++.+|..+++.+...|+|. |+++||+|... .++..+...+++.+....
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~-i~~INKmDr~~--a~~~~~~~~i~~~l~~~~~~~~~~~~ 159 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPT-IFFINKIDQNG--IDLSTVYQDIKEKLSAEIVIKQKVEL 159 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSC-EECCEECCSSS--CCSHHHHHHHHHTTCCCCCCCCCCCS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCe-EEEEecccccc--CCHHHHHHHHHHHhCCCccccceeEe
Confidence 999999999999999999999999999999999999994 78999999864 122333333433331100
Q ss_pred --------------------------------------------------cCCCeEEEEecccCCcCCchhhcchHHHHH
Q 046721 205 --------------------------------------------------YHGAKLFKLSGLIQGKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 205 --------------------------------------------------~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~ 234 (1068)
....+||+.||+++ .++..|+..|.
T Consensus 160 ~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~-----~Gv~~LLd~i~ 234 (638)
T 3j25_A 160 YPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSN-----IGIDNLIEVIT 234 (638)
T ss_dssp CGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTC-----CSHHHHHHHHH
T ss_pred eccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccC-----CCchhHhhhhh
Confidence 12356777788754 56778888887
Q ss_pred HhhcccccccccCCeEEEEeEEecCCCccccccCCCCceEEEEEEEEeeeecCCcEEEEecCCCeeEEeeec
Q 046721 235 VMKFHSLSWRTSHPYILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRGCNLKKGTKVHIAGAGDYSLAGVTG 306 (1068)
Q Consensus 235 ~~k~r~l~wR~~rPylLadrved~~~~~~i~~~~~~~gtl~VtGyVRG~~L~~nqlVhIpG~GdfqIk~I~~ 306 (1068)
...+.+.. +...|+.. .+..+.. ++ ..|.+ .+|.|..+.|+.|+.|++.+.+...|.++-.
T Consensus 235 ~~~p~p~~-~~~~~~~~--~Vfk~~~------d~-~~G~l-a~~RV~sG~l~~g~~v~~~~~~~~~v~~l~~ 295 (638)
T 3j25_A 235 NKFYSSTH-RGPSELCG--NVFKIEY------TK-KRQRL-AYIRLYSGVLHLRDSVRVSEKEKIKVTEMYT 295 (638)
T ss_dssp HSCCCSGG-GSCCCCCB--EEBCCCC------CS-TTCCC-CBCCBSSBCCCSCCCSSSCCCCCSSBCCCCS
T ss_pred ccccCccc-chhhhhcc--eeeeeee------ec-cCceE-EEEEEEcCcccCCCccccccCcceeEEeeec
Confidence 76665542 22334321 1222211 11 12333 5567778889999999887776655555443
No 31
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.49 E-value=8.9e-14 Score=162.31 Aligned_cols=155 Identities=15% Similarity=0.252 Sum_probs=108.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCC---------hh--H---HH
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPND---------IN--G---MI 135 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd---------l~--s---ml 135 (1068)
..++.|+|||.||||||||+|+|++.. ++....+|...+. .+...+..++||||||. +. + ++
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 456899999999999999999999873 3444455554333 23335678999999992 11 1 34
Q ss_pred HHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcH-HHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 136 DCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDK-KKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 136 d~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~-k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
.++..||++|+|+|++.+...++..++..+...|.| +|+|+||+|+.... .......+.+...+. ...+++++++|
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~S 329 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRDHFQ--FLDYAPILFMS 329 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSCCCTTHHHHHHHHHHHHCG--GGTTSCEEECC
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCc-EEEEEECccCCCcchHHHHHHHHHHHHhcc--cCCCCCEEEEe
Confidence 577899999999999999998888888888888988 89999999998532 223445555554442 23578999999
Q ss_pred cccCCcCCchhhcchHHHHHHh
Q 046721 215 GLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 215 Al~g~~y~~~ei~nLlR~I~~~ 236 (1068)
|++| ..+..+...+...
T Consensus 330 A~tg-----~~v~~l~~~i~~~ 346 (436)
T 2hjg_A 330 ALTK-----KRIHTLMPAIIKA 346 (436)
T ss_dssp TTTC-----TTGGGHHHHHHHH
T ss_pred cccC-----CCHHHHHHHHHHH
Confidence 9976 5566666555433
No 32
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.48 E-value=6.6e-13 Score=158.73 Aligned_cols=216 Identities=12% Similarity=0.169 Sum_probs=139.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcccc--------------CCCC-----ceeccEEE------EeCCCeeEEEEeCCC-
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTK--------------LKVP-----EVRGPVTV------VSGKKRRLQFVECPN- 129 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~--------------~~~~-----tt~~~Iti------~~~~k~rl~fIDtPG- 129 (1068)
.+.|+|+|++|+|||||+++|+..... .... ....++|+ +......++||||||
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 478999999999999999999964100 0000 00112221 234578999999999
Q ss_pred -ChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccc----
Q 046721 130 -DING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTE---- 203 (1068)
Q Consensus 130 -dl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e---- 203 (1068)
++.. +..++..||++|+|+|++.++..++..++..+...++| +|+|+||+|+..... ..+...++..+...
T Consensus 93 ~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~--~~~~~~i~~~l~~~~~~~ 169 (529)
T 2h5e_A 93 EDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP--MELLDEVENELKIGCAPI 169 (529)
T ss_dssp TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH--HHHHHHHHHHHCCEEEES
T ss_pred hhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH--HHHHHHHHHHhCCCccce
Confidence 4554 77888999999999999999999999999998888999 899999999975221 22333333332100
Q ss_pred -----------------------c-------------------------------------------------------c
Q 046721 204 -----------------------L-------------------------------------------------------Y 205 (1068)
Q Consensus 204 -----------------------~-------------------------------------------------------~ 205 (1068)
+ .
T Consensus 170 ~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~ 249 (529)
T 2h5e_A 170 TWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAG 249 (529)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHHTT
T ss_pred ecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHHhC
Confidence 0 0
Q ss_pred CCCeEEEEecccCCcCCchhhcchHHHHHHhhcccccccc--------cCCeEEEEeEEecCCCccccccCCCCceEEEE
Q 046721 206 HGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWRT--------SHPYILVDRFEDVTPPERVHVNNKCDRNVAIY 277 (1068)
Q Consensus 206 ~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR~--------~rPylLadrved~~~~~~i~~~~~~~gtl~Vt 277 (1068)
...+||+.||+++ .++..|+..|....|.|..... ..|++. .+..+... .++...|++ ++
T Consensus 250 ~~~Pv~~gSA~~~-----~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~--~vfKi~~~----~d~~~~G~i-~~ 317 (529)
T 2h5e_A 250 EITPVFFGTALGN-----FGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTG--FVFKIQAN----MDPKHRDRV-AF 317 (529)
T ss_dssp SEEEEEECBTTTT-----BSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEE--EEEEECSS----CCSSSSCCC-EE
T ss_pred ceeEEEeeecccC-----CCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEE--EEEEEeec----cCcCCCceE-EE
Confidence 0135777787754 5677888888887776653221 124321 12222110 001113554 68
Q ss_pred EEEEeeeecCCcEEEEecCC-CeeEEeeec
Q 046721 278 GYLRGCNLKKGTKVHIAGAG-DYSLAGVTG 306 (1068)
Q Consensus 278 GyVRG~~L~~nqlVhIpG~G-dfqIk~I~~ 306 (1068)
|.|..+.|+.|+.|.+.+.| ...|.+|..
T Consensus 318 ~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~ 347 (529)
T 2h5e_A 318 MRVVSGKYEKGMKLRQVRTAKDVVISDALT 347 (529)
T ss_dssp EEEEESCEETTCEEEETTTTEEEECSCEEC
T ss_pred EEEecCeEcCCCEEEEeeCCCEEEeceeeE
Confidence 89999999999999988766 345555554
No 33
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.48 E-value=1.7e-13 Score=160.79 Aligned_cols=156 Identities=15% Similarity=0.263 Sum_probs=111.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCC-----------ChhH---H
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPN-----------DING---M 134 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPG-----------dl~s---m 134 (1068)
...+..|+|+|.+|+|||||+|+|++.. +...+.++...+. .+...+.+++|||||| ...+ .
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 3457899999999999999999999763 3444455544332 2333567999999999 1112 4
Q ss_pred HHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCc-HHHHHHHHHHHHHHhcccccCCCeEEEE
Q 046721 135 IDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTD-KKKLRKTKQHLKHRFGTELYHGAKLFKL 213 (1068)
Q Consensus 135 ld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~-~k~l~~vkk~Lk~~~~~e~~~~~kVf~I 213 (1068)
+.++..||++|+|+|++.++..++..++..+...|.| +|+|+||+|+... ........+.++..+ .+..+++++++
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 348 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRDHF--QFLDYAPILFM 348 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSCCCSSHHHHHHHHHHHHC--GGGTTSCEEEC
T ss_pred HHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEEChhcCCCchHHHHHHHHHHHHhc--ccCCCCCEEEE
Confidence 4567899999999999999999999999999889988 8999999999853 223445555555543 22357899999
Q ss_pred ecccCCcCCchhhcchHHHHHHh
Q 046721 214 SGLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 214 SAl~g~~y~~~ei~nLlR~I~~~ 236 (1068)
||++| ..+..+...|...
T Consensus 349 SA~~g-----~gv~~l~~~i~~~ 366 (456)
T 4dcu_A 349 SALTK-----KRIHTLMPAIIKA 366 (456)
T ss_dssp CTTTC-----TTGGGHHHHHHHH
T ss_pred cCCCC-----cCHHHHHHHHHHH
Confidence 99976 5566666555443
No 34
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.47 E-value=1.6e-12 Score=160.10 Aligned_cols=122 Identities=16% Similarity=0.215 Sum_probs=87.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc---------c-CCCC-----ceeccEEE------EeCCCeeEEEEeCCC--Chh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT---------K-LKVP-----EVRGPVTV------VSGKKRRLQFVECPN--DIN 132 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~---------~-~~~~-----tt~~~Iti------~~~~k~rl~fIDtPG--dl~ 132 (1068)
.++|+|+|++|+|||||+++|+.... . .... .....+|+ +......++|||||| ++.
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 91 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFT 91 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchH
Confidence 57899999999999999999984310 0 0000 00112232 223478999999999 455
Q ss_pred H-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHh
Q 046721 133 G-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRF 200 (1068)
Q Consensus 133 s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~ 200 (1068)
. +..++..||++|+|+|++.+...++..++..+...++| +|+|+||+|+... .+..+...++..+
T Consensus 92 ~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~--~~~~~~~~l~~~l 157 (691)
T 1dar_A 92 IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP-RIAFANKMDKTGA--DLWLVIRTMQERL 157 (691)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTC--CHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCC-EEEEEECCCcccC--CHHHHHHHHHHHh
Confidence 4 77788999999999999999999999888888889999 7889999999752 2344555555543
No 35
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.47 E-value=1.6e-13 Score=135.21 Aligned_cols=144 Identities=22% Similarity=0.205 Sum_probs=96.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCCh---------hH-HHHHHHhcC
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPNDI---------NG-MIDCAKFAD 142 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGdl---------~s-mld~akvAD 142 (1068)
+.|+|+|.+|+|||||+++|++.. ......++..... .....+..+.|+||||.. .. ....+..+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 479999999999999999999874 2222222322222 222345689999999932 22 344568999
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 143 LALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 143 lVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
++|+|+|++.++......++..+...++| +++|+||+|+...... +.. +. . ....++|++||+++
T Consensus 82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~-------~~~-~~-~-~~~~~~~~~Sa~~~---- 146 (161)
T 2dyk_A 82 VVLFAVDGRAELTQADYEVAEYLRRKGKP-VILVATKVDDPKHELY-------LGP-LY-G-LGFGDPIPTSSEHA---- 146 (161)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHTCC-EEEEEECCCSGGGGGG-------CGG-GG-G-GSSCSCEECBTTTT----
T ss_pred EEEEEEECCCcccHhHHHHHHHHHhcCCC-EEEEEECcccccchHh-------HHH-HH-h-CCCCCeEEEecccC----
Confidence 99999999988877777788888778888 8999999999763211 111 11 1 12237899999865
Q ss_pred chhhcchHHHHHHh
Q 046721 223 KKDIGNLAEFISVM 236 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~ 236 (1068)
.++.++...|...
T Consensus 147 -~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 147 -RGLEELLEAIWER 159 (161)
T ss_dssp -BSHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHh
Confidence 5666666666443
No 36
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.47 E-value=2e-13 Score=135.79 Aligned_cols=153 Identities=12% Similarity=0.100 Sum_probs=96.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEEeCC
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--INGM-IDCAKFADLALLLIDAS 151 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVIDas 151 (1068)
.+..|+|+|.+|+|||||+|+|++........+....+..+.....++.|+||||. +..+ ...+..+|++|||+|++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 85 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC 85 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECC
Confidence 46889999999999999999998764322222221111122334789999999994 4443 34568899999999998
Q ss_pred CC--CchhHHHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhh
Q 046721 152 HG--FEMETFEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDI 226 (1068)
Q Consensus 152 ~g--~e~~t~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei 226 (1068)
.+ +......+..++.. .++| +++|+||+|+.... ....+.+.+...+.. ..+.++|.+||+++ .++
T Consensus 86 ~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~-----~gi 156 (171)
T 1upt_A 86 DRDRIGISKSELVAMLEEEELRKAI-LVVFANKQDMEQAM-TSSEMANSLGLPALK--DRKWQIFKTSATKG-----TGL 156 (171)
T ss_dssp CCTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCC-CHHHHHHHHTGGGCT--TSCEEEEECCTTTC-----TTH
T ss_pred CHHHHHHHHHHHHHHHhchhhCCCE-EEEEEECCCCcCCC-CHHHHHHHhCchhcc--CCceEEEECcCCCC-----cCH
Confidence 76 33333344444443 4666 89999999997631 122233322111111 12457999999865 566
Q ss_pred cchHHHHHHh
Q 046721 227 GNLAEFISVM 236 (1068)
Q Consensus 227 ~nLlR~I~~~ 236 (1068)
..+...|...
T Consensus 157 ~~l~~~l~~~ 166 (171)
T 1upt_A 157 DEAMEWLVET 166 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6676666544
No 37
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.47 E-value=1.6e-12 Score=160.08 Aligned_cols=121 Identities=17% Similarity=0.236 Sum_probs=86.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc---ccc-----C--CCCc-----eeccEEE------EeCCCeeEEEEeCCC--Chh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH---YTK-----L--KVPE-----VRGPVTV------VSGKKRRLQFVECPN--DIN 132 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~---~~~-----~--~~~t-----t~~~Iti------~~~~k~rl~fIDtPG--dl~ 132 (1068)
.++|+|+|++|+|||||+|+|+.. ... . .... ....+|+ +.....+++|||||| ++.
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 89 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFT 89 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchH
Confidence 578999999999999999999953 100 0 0000 0112222 233568999999999 454
Q ss_pred H-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHH
Q 046721 133 G-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHR 199 (1068)
Q Consensus 133 s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~ 199 (1068)
. +..++..||++|||+|++.++..++..++..+...++| +|+|+||+|+... .+..+.+.++..
T Consensus 90 ~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~--~~~~~~~~l~~~ 154 (693)
T 2xex_A 90 VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVP-RIVFVNKMDKLGA--NFEYSVSTLHDR 154 (693)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCC-EEEEEECCCcccc--chHHHHHHHHHH
Confidence 4 77788999999999999999999999999888889999 7899999999752 233444444444
No 38
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.47 E-value=1.1e-13 Score=138.70 Aligned_cols=155 Identities=19% Similarity=0.280 Sum_probs=101.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccC--CCCceecc-EEEEeCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKL--KVPEVRGP-VTVVSGKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~--~~~tt~~~-Iti~~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
..++.|+|+|.+|+|||||+++|++..... ....+... ...+...+..+.|+||||. +.. ....+..+|++|||
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 85 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILV 85 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEE
Confidence 346789999999999999999999863211 11111111 1112234578999999993 333 22345789999999
Q ss_pred EeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHH--hcccccCCCeEEEEecccCCcCCchh
Q 046721 148 IDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHR--FGTELYHGAKLFKLSGLIQGKYTKKD 225 (1068)
Q Consensus 148 IDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~--~~~e~~~~~kVf~ISAl~g~~y~~~e 225 (1068)
+|++.+...+.++.+..+...++| +++|+||+|+.... ...+...+... +...+....++|++||+++ ..
T Consensus 86 ~d~~~~~~~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-----~g 157 (178)
T 2lkc_A 86 VAADDGVMPQTVEAINHAKAANVP-IIVAINKMDKPEAN--PDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK-----EG 157 (178)
T ss_dssp EETTCCCCHHHHHHHHHHGGGSCC-EEEEEETTTSSCSC--HHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS-----HH
T ss_pred EECCCCCcHHHHHHHHHHHhCCCC-EEEEEECccCCcCC--HHHHHHHHHhcCcChhHcCCcccEEEEecCCC-----CC
Confidence 999988877888888887778888 89999999998531 11222222111 1111112358999999865 66
Q ss_pred hcchHHHHHHh
Q 046721 226 IGNLAEFISVM 236 (1068)
Q Consensus 226 i~nLlR~I~~~ 236 (1068)
+..+...|...
T Consensus 158 v~~l~~~l~~~ 168 (178)
T 2lkc_A 158 LDHLLEMILLV 168 (178)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 67776666443
No 39
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.46 E-value=1.3e-12 Score=160.36 Aligned_cols=211 Identities=21% Similarity=0.175 Sum_probs=142.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcccc----CCC------Cc-----eeccEE------EEeCCCeeEEEEeCCC--Ch
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTK----LKV------PE-----VRGPVT------VVSGKKRRLQFVECPN--DI 131 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~----~~~------~t-----t~~~It------i~~~~k~rl~fIDtPG--dl 131 (1068)
..++|+|+|++|+|||||+++|++.... ..+ .. ....++ .+......++|+|||| ++
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 3578999999999999999999954210 000 00 011122 1223467899999999 44
Q ss_pred hH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccc-------
Q 046721 132 NG-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTE------- 203 (1068)
Q Consensus 132 ~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e------- 203 (1068)
.. +..++..+|++|+|+|++.+++.++..++..+...|+| +|+|+||+|+. .. ...+.+.+...+...
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip-~ilv~NKiD~~-~~--~~~~~~~l~~~l~~~~~~~~Pi 163 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLP-RMVVVTKLDKG-GD--YYALLEDLRSTLGPILPIDLPL 163 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECGGGC-CC--HHHHHHHHHHHHCSEEECEEEE
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCC-EEEEecCCchh-hh--HHHHHHHHHHHhCCcceEEeee
Confidence 44 77888999999999999999999999999999989999 78899999987 21 233344444433200
Q ss_pred -----------------------------------------------------------cc-------------------
Q 046721 204 -----------------------------------------------------------LY------------------- 205 (1068)
Q Consensus 204 -----------------------------------------------------------~~------------------- 205 (1068)
+.
T Consensus 164 ~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~ 243 (665)
T 2dy1_A 164 YEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVR 243 (665)
T ss_dssp EETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred cCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 00
Q ss_pred --CCCeEEEEecccCCcCCchhhcchHHHHHHhhcccccccccCCe-EEEEeEEecCCCccccccCCCCceEEEEEEEEe
Q 046721 206 --HGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKFHSLSWRTSHPY-ILVDRFEDVTPPERVHVNNKCDRNVAIYGYLRG 282 (1068)
Q Consensus 206 --~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~r~l~wR~~rPy-lLadrved~~~~~~i~~~~~~~gtl~VtGyVRG 282 (1068)
...++|+.||+++ .++..|+..|....+.+.......|. +++-++...+ ..|.+ ++|.|..
T Consensus 244 ~~~~~pv~~~SA~~~-----~Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~----------~~G~~-~~~rV~s 307 (665)
T 2dy1_A 244 RGLLYPVALASGERE-----IGVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDP----------FMGQV-AYLRLYR 307 (665)
T ss_dssp TTSCEEEEECBTTTT-----BSHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEET----------TTEEE-EEEEEEE
T ss_pred hCCeeEEEEeecccC-----cCHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEcC----------CCCeE-EEEEEcc
Confidence 1147888998854 56778888887777766532133454 3333333221 13454 7889999
Q ss_pred eeecCCcEEEEecCCCeeEEeeec
Q 046721 283 CNLKKGTKVHIAGAGDYSLAGVTG 306 (1068)
Q Consensus 283 ~~L~~nqlVhIpG~GdfqIk~I~~ 306 (1068)
+.|+.|+.|.+++ ....|.+|..
T Consensus 308 G~l~~g~~v~~~~-~~~~v~~l~~ 330 (665)
T 2dy1_A 308 GRLKPGDSLQSEA-GQVRLPHLYV 330 (665)
T ss_dssp SEECTTEEEBCTT-SCEEESSEEE
T ss_pred cEEecCCEEEcCC-CeEEEeEEEE
Confidence 9999999998776 4455555543
No 40
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.46 E-value=6.3e-13 Score=164.20 Aligned_cols=120 Identities=17% Similarity=0.252 Sum_probs=87.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc---------------ccCCCCceeccEEEEe--------C-----CCeeEEEEeCC
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY---------------TKLKVPEVRGPVTVVS--------G-----KKRRLQFVECP 128 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~---------------~~~~~~tt~~~Iti~~--------~-----~k~rl~fIDtP 128 (1068)
++||||||.++|||||+.+|+... ......+...+|||.+ + ....|+|||||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 799999999999999999998531 0011112234455422 1 25789999999
Q ss_pred C--ChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHH
Q 046721 129 N--DING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHR 199 (1068)
Q Consensus 129 G--dl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~ 199 (1068)
| ||.. +..++.++|.+|+||||.+|++.+|..+++.+...|+| .|+|+||+|... ..+..+...+...
T Consensus 94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp-~i~~iNKiDr~~--a~~~~~~~ei~~~ 164 (709)
T 4fn5_A 94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVP-RIVYVNKMDRQG--ANFLRVVEQIKKR 164 (709)
T ss_dssp SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCC-EEEEEECSSSTT--CCHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCC-eEEEEccccccC--ccHHHHHHHhhhh
Confidence 9 6665 99999999999999999999999999999999999999 688999999864 2234444444443
No 41
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.46 E-value=3.7e-12 Score=157.12 Aligned_cols=121 Identities=13% Similarity=0.196 Sum_probs=87.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc---ccC-------CCCc-----eeccEEE------EeCCC-------eeEEEEeC
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY---TKL-------KVPE-----VRGPVTV------VSGKK-------RRLQFVEC 127 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~---~~~-------~~~t-----t~~~Iti------~~~~k-------~rl~fIDt 127 (1068)
.++|+|+|++|+|||||+++|+... ... .... ....+|+ +.... ..++||||
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT 89 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence 5789999999999999999997531 100 0000 0122332 11223 78999999
Q ss_pred CC--ChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHH
Q 046721 128 PN--DING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHR 199 (1068)
Q Consensus 128 PG--dl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~ 199 (1068)
|| +|.. +..++..||++|+|+|++.+...++..++..+...++| +|+|+||+|+... .+..+...++..
T Consensus 90 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip-~ilviNKiD~~~~--~~~~~~~~l~~~ 161 (704)
T 2rdo_7 90 PGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVP-RIAFVNKMDRMGA--NFLKVVNQIKTR 161 (704)
T ss_pred CCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEeCCCcccc--cHHHHHHHHHHH
Confidence 99 4554 77788999999999999999988999999988889999 7889999998752 234444444433
No 42
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.45 E-value=6.7e-13 Score=140.41 Aligned_cols=155 Identities=14% Similarity=0.187 Sum_probs=94.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccc--cCCCCceeccEE-EEeCCCeeEEEEeCCCC------------hhHHHHHHH
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYT--KLKVPEVRGPVT-VVSGKKRRLQFVECPND------------INGMIDCAK 139 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~--~~~~~tt~~~It-i~~~~k~rl~fIDtPGd------------l~smld~ak 139 (1068)
.+..|+|+|.+|||||||+|+|++... .....++..... ........+.|+||||. +..+.....
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 107 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAH 107 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhc
Confidence 457999999999999999999998732 222222222111 22234678999999995 222334467
Q ss_pred hcCEEEEEEeCCCCCch---hHHHHHHHHHhC--CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 140 FADLALLLIDASHGFEM---ETFEFLNLMQNH--GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 140 vADlVLlVIDas~g~e~---~t~eiL~~L~~~--GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
.+|++|||+|++....- ....++..+... ++| +|+|+||+|+.............+.. +........++|++|
T Consensus 108 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~S 185 (228)
T 2qu8_A 108 INGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS-IVIGFNKIDKCNMDSLSIDNKLLIKQ-ILDNVKNPIKFSSFS 185 (228)
T ss_dssp SSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCC-EEEEEECGGGCC--CCCHHHHHHHHH-HHHHCCSCEEEEECC
T ss_pred cccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCc-EEEEEeCcccCCchhhHHHHHHHHHH-HHHhcCCCceEEEEe
Confidence 88999999999865432 223566666665 777 89999999997532110111111111 111111236899999
Q ss_pred cccCCcCCchhhcchHHHHHHh
Q 046721 215 GLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 215 Al~g~~y~~~ei~nLlR~I~~~ 236 (1068)
|++| .++..+...|...
T Consensus 186 A~~g-----~gi~~l~~~l~~~ 202 (228)
T 2qu8_A 186 TLTG-----VGVEQAKITACEL 202 (228)
T ss_dssp TTTC-----TTHHHHHHHHHHH
T ss_pred cccC-----CCHHHHHHHHHHH
Confidence 9965 5566666555443
No 43
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.45 E-value=3.2e-13 Score=137.59 Aligned_cols=158 Identities=11% Similarity=0.088 Sum_probs=97.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEEeCC
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--ING-MIDCAKFADLALLLIDAS 151 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVIDas 151 (1068)
....|+|+|.+|||||||+++|++........|..-.+..+...+..+.|+||||. +.. ....+..+|++|||+|++
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 94 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST 94 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCC
Confidence 36899999999999999999999653211111111111122234689999999993 444 345678999999999998
Q ss_pred CCC--chhHHHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhh
Q 046721 152 HGF--EMETFEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDI 226 (1068)
Q Consensus 152 ~g~--e~~t~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei 226 (1068)
.+. +.....+..++.. .+.| +|+|+||+|+.... ....+.+.+.... ....+.++|.+||++| .++
T Consensus 95 ~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~i~~~~~~~~--~~~~~~~~~~~Sa~~g-----~gi 165 (187)
T 1zj6_A 95 DRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECM-TVAEISQFLKLTS--IKDHQWHIQACCALTG-----EGL 165 (187)
T ss_dssp CTTTHHHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTCC-CHHHHHHHHTGGG--CCSSCEEEEECBTTTT-----BTH
T ss_pred CHHHHHHHHHHHHHHHhchhhCCCe-EEEEEECCCCcCCC-CHHHHHHHhChhh--hcCCCcEEEEccCCCC-----cCH
Confidence 763 3222233333332 4666 89999999997521 1222322221110 0113458999999865 677
Q ss_pred cchHHHHHHhhcccc
Q 046721 227 GNLAEFISVMKFHSL 241 (1068)
Q Consensus 227 ~nLlR~I~~~k~r~l 241 (1068)
.++...|......+.
T Consensus 166 ~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 166 CQGLEWMMSRLKIRL 180 (187)
T ss_dssp HHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHh
Confidence 778777766655443
No 44
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.45 E-value=1.2e-12 Score=133.05 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=92.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccC-CCCceeccEE--EEeCC--C------------------------------
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVRGPVT--VVSGK--K------------------------------ 119 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~~~It--i~~~~--k------------------------------ 119 (1068)
.+..|+|+|.+|+|||||+|+|++..... ...++...+. .+... .
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 46889999999999999999999873221 1111111111 11111 1
Q ss_pred -------eeEEEEeCCCC--hhH-HHHHHHhcCEEEEEEeCCCCCchhH-HHHHHHHHh-CCCCcEEEEEeCCCcCCcHH
Q 046721 120 -------RRLQFVECPND--ING-MIDCAKFADLALLLIDASHGFEMET-FEFLNLMQN-HGLPNVMGVLTHLDKFTDKK 187 (1068)
Q Consensus 120 -------~rl~fIDtPGd--l~s-mld~akvADlVLlVIDas~g~e~~t-~eiL~~L~~-~GlP~vIvVLNKiDlvk~~k 187 (1068)
..+.|+||||. +.. +...+..||++|||+|++.+..... ..++..+.. .+.| +|+|+||+|......
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~p-iilv~NK~D~~~~~~ 164 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYI-IILVANKIDKNKFQV 164 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCE-EEEEEECTTCC-CCS
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCc-EEEEEECCCcccccC
Confidence 78999999993 333 5667789999999999987643222 233443433 5655 899999999322111
Q ss_pred HHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchHHHHHHh
Q 046721 188 KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 188 ~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~ 236 (1068)
......+.++. .+.++|++||+++ .++..+...|...
T Consensus 165 ~~~~~~~~~~~-------~~~~~~~~Sa~~~-----~~i~~l~~~l~~~ 201 (208)
T 3clv_A 165 DILEVQKYAQD-------NNLLFIQTSAKTG-----TNIKNIFYMLAEE 201 (208)
T ss_dssp CHHHHHHHHHH-------TTCEEEEECTTTC-----TTHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-------cCCcEEEEecCCC-----CCHHHHHHHHHHH
Confidence 12233332222 1568999999965 5666666666543
No 45
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.44 E-value=7.2e-13 Score=130.99 Aligned_cols=149 Identities=14% Similarity=0.156 Sum_probs=92.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc-cCCCCceeccEE--E-EeCCCeeEEEEeCCC--ChhH-HHHHHHhcCEEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT-KLKVPEVRGPVT--V-VSGKKRRLQFVECPN--DING-MIDCAKFADLALLLI 148 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~-~~~~~tt~~~It--i-~~~~k~rl~fIDtPG--dl~s-mld~akvADlVLlVI 148 (1068)
+..|+|+|.+|+|||||+|+|++... .....++...+. + .......+.|+|||| .+.. ....+..+|++|+|+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 82 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVY 82 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEE
Confidence 46899999999999999999998632 222222222122 1 123356899999999 3444 344578899999999
Q ss_pred eCCCCCchhH-HH----HHHHHHhCCCCcEEEEEeCCCcCCcHHH-HHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 149 DASHGFEMET-FE----FLNLMQNHGLPNVMGVLTHLDKFTDKKK-LRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 149 Das~g~e~~t-~e----iL~~L~~~GlP~vIvVLNKiDlvk~~k~-l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
|++....-.. .. ++......++| +++|+||+|+...... ...... +... ..+.++|++||++|
T Consensus 83 d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~-~~~~-----~~~~~~~~~Sa~~~---- 151 (167)
T 1c1y_A 83 SITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVVGKEQGQN-LARQ-----WCNCAFLESSAKSK---- 151 (167)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGCCSCHHHHHH-HHHH-----TTSCEEEECBTTTT----
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCcCCCc-EEEEEECccccccccCCHHHHHH-HHHH-----ccCCcEEEecCCCC----
Confidence 9986422111 12 22222234777 8999999999752111 111221 2111 13678999999865
Q ss_pred chhhcchHHHHHHh
Q 046721 223 KKDIGNLAEFISVM 236 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~ 236 (1068)
.++..+...|...
T Consensus 152 -~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 152 -INVNEIFYDLVRQ 164 (167)
T ss_dssp -BSHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHH
Confidence 5666676666443
No 46
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.44 E-value=1.5e-13 Score=150.73 Aligned_cols=146 Identities=19% Similarity=0.216 Sum_probs=97.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCCCeeEEEEeCCC--Chh----------HHHH---H
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGKKRRLQFVECPN--DIN----------GMID---C 137 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~k~rl~fIDtPG--dl~----------smld---~ 137 (1068)
...|+|+|.+|||||||+|+|++.. ++..+.++..... .+......+.|+|||| ++. .+.. .
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~ 82 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHh
Confidence 4789999999999999999999973 2223333322222 2334567899999999 222 1111 1
Q ss_pred HHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEeccc
Q 046721 138 AKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLI 217 (1068)
Q Consensus 138 akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~ 217 (1068)
...+|++|+|+|++. ......++..+...++| +|+|+||+|+.... .+......+...+ +.+++++||++
T Consensus 83 ~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p-~ivv~NK~Dl~~~~-~~~~~~~~l~~~l------g~~~i~~SA~~ 152 (274)
T 3i8s_A 83 SGDADLLINVVDASN--LERNLYLTLQLLELGIP-CIVALNMLDIAEKQ-NIRIEIDALSARL------GCPVIPLVSTR 152 (274)
T ss_dssp HTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCC-EEEEEECHHHHHHT-TEEECHHHHHHHH------TSCEEECCCGG
T ss_pred hcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCC-EEEEEECccchhhh-hHHHHHHHHHHhc------CCCEEEEEcCC
Confidence 268999999999986 22334566667778999 89999999986421 1111123333333 57899999985
Q ss_pred CCcCCchhhcchHHHHHHh
Q 046721 218 QGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 218 g~~y~~~ei~nLlR~I~~~ 236 (1068)
| .++..|...|...
T Consensus 153 g-----~gi~el~~~i~~~ 166 (274)
T 3i8s_A 153 G-----RGIEALKLAIDRY 166 (274)
T ss_dssp G-----HHHHHHHHHHHTC
T ss_pred C-----CCHHHHHHHHHHH
Confidence 5 6777777766443
No 47
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.43 E-value=1.4e-13 Score=149.72 Aligned_cols=144 Identities=15% Similarity=0.160 Sum_probs=96.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCCCeeEEEEeCCCC--hhH----------HH-HHH--
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGKKRRLQFVECPND--ING----------MI-DCA-- 138 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd--l~s----------ml-d~a-- 138 (1068)
+.|+|+|.+|||||||+|+|++.. ++..+.++..... .+...+..+.|+||||. +.. +. ..+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 478999999999999999999873 2233333322222 23334679999999992 321 21 222
Q ss_pred HhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 139 KFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 139 kvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
..+|+||+|+|++. ......++..+...++| +|+|+||+|+.... .+......+...+ +.+++++||++|
T Consensus 82 ~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~p-vilv~NK~Dl~~~~-~~~~~~~~l~~~l------g~~vi~~SA~~g 151 (256)
T 3iby_A 82 LEYDCIINVIDACH--LERHLYLTSQLFELGKP-VVVALNMMDIAEHR-GISIDTEKLESLL------GCSVIPIQAHKN 151 (256)
T ss_dssp SCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSC-EEEEEECHHHHHHT-TCEECHHHHHHHH------CSCEEECBGGGT
T ss_pred CCCCEEEEEeeCCC--chhHHHHHHHHHHcCCC-EEEEEEChhcCCcC-CcHHHHHHHHHHc------CCCEEEEECCCC
Confidence 67999999999986 22334566777778999 89999999987421 1111223344444 679999999965
Q ss_pred CcCCchhhcchHHHHHH
Q 046721 219 GKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 219 ~~y~~~ei~nLlR~I~~ 235 (1068)
.++..|...|..
T Consensus 152 -----~gi~el~~~i~~ 163 (256)
T 3iby_A 152 -----IGIPALQQSLLH 163 (256)
T ss_dssp -----BSHHHHHHHHHT
T ss_pred -----CCHHHHHHHHHh
Confidence 667777766643
No 48
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.43 E-value=9.1e-13 Score=129.78 Aligned_cols=148 Identities=16% Similarity=0.174 Sum_probs=91.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc-cCCCCceeccEE--EE-eCCCeeEEEEeCCC--ChhHH-HHHHHhcCEEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT-KLKVPEVRGPVT--VV-SGKKRRLQFVECPN--DINGM-IDCAKFADLALLLI 148 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~-~~~~~tt~~~It--i~-~~~k~rl~fIDtPG--dl~sm-ld~akvADlVLlVI 148 (1068)
+..|+|+|++|+|||||+++|++... .....++..... +. .+....+.|+|||| .+..+ ...+..+|++++|+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVY 82 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEE
Confidence 47899999999999999999997632 212222111111 22 22345699999999 34443 34568899999999
Q ss_pred eCCCCCchhH-----HHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 149 DASHGFEMET-----FEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 149 Das~g~e~~t-----~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
|++....... ..++..+...+.| +++|+||+|+.............+...+ +.++|++||+++
T Consensus 83 d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~----- 150 (167)
T 1kao_A 83 SLVNQQSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLESEREVSSSEGRALAEEW------GCPFMETSAKSK----- 150 (167)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGCCSCHHHHHHHHHHH------TSCEEEECTTCH-----
T ss_pred eCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcccccccCCHHHHHHHHHHh------CCCEEEecCCCC-----
Confidence 9986432211 1233322234777 8999999998642211111111222222 468999999854
Q ss_pred hhhcchHHHHHH
Q 046721 224 KDIGNLAEFISV 235 (1068)
Q Consensus 224 ~ei~nLlR~I~~ 235 (1068)
.++..+...|..
T Consensus 151 ~gi~~l~~~l~~ 162 (167)
T 1kao_A 151 TMVDELFAEIVR 162 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 667777766644
No 49
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.42 E-value=8.6e-13 Score=130.51 Aligned_cols=150 Identities=9% Similarity=0.043 Sum_probs=93.2
Q ss_pred EEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEEeCCCCC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--INGM-IDCAKFADLALLLIDASHGF 154 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVIDas~g~ 154 (1068)
.|+|+|.+|+|||||+++|++........|..-.+..+......+.|+||||. +..+ ...+..||++|||+|++.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 81 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 81 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGG
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999998763222222221112233445789999999994 4444 34578999999999998652
Q ss_pred --chhHHHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcch
Q 046721 155 --EMETFEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNL 229 (1068)
Q Consensus 155 --e~~t~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nL 229 (1068)
......+..++.. .+.| +++|+||+|+.... ....+...+..... .....++|.+||++| .++.++
T Consensus 82 s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~-----~gi~~l 152 (164)
T 1r8s_A 82 RVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNAM-NAAEITDKLGLHSL--RHRNWYIQATCATSG-----DGLYEG 152 (164)
T ss_dssp GHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCC-CHHHHHHHTTGGGC--SSCCEEEEECBTTTT-----BTHHHH
T ss_pred HHHHHHHHHHHHHhchhhcCCe-EEEEEECcCCcCCC-CHHHHHHHhCcccc--cCccEEEEEcccCCC-----cCHHHH
Confidence 2222223333322 2666 89999999997531 12222222211110 012457999999865 566677
Q ss_pred HHHHHHh
Q 046721 230 AEFISVM 236 (1068)
Q Consensus 230 lR~I~~~ 236 (1068)
...|...
T Consensus 153 ~~~l~~~ 159 (164)
T 1r8s_A 153 LDWLSNQ 159 (164)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666543
No 50
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.42 E-value=9.2e-13 Score=133.16 Aligned_cols=149 Identities=17% Similarity=0.215 Sum_probs=91.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccc-cCCCCceeccEE--E-EeCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYT-KLKVPEVRGPVT--V-VSGKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~-~~~~~tt~~~It--i-~~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
.+..|+|+|.+|+|||||+|+|++... .....++...+. + ..+....+.|+||||. +.. ....+..+|++|+|
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 82 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 82 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 457899999999999999999998642 222222222222 1 2233456888999993 444 34457889999999
Q ss_pred EeCCCCCchhH-HHHHHHH----HhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 148 IDASHGFEMET-FEFLNLM----QNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 148 IDas~g~e~~t-~eiL~~L----~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
+|++....... ...+..+ ...++| +|+|+||+|+...... ......+...+ +.++|++||++|
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~-~~~~~~~~~~~------~~~~~~~Sa~~g---- 150 (189)
T 4dsu_A 83 FAINNTKSFEDIHHYREQIKRVKDSEDVP-MVLVGNKCDLPSRTVD-TKQAQDLARSY------GIPFIETSAKTR---- 150 (189)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTSSSCSSC-HHHHHHHHHHH------TCCEEECCTTTC----
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccCcccccC-HHHHHHHHHHc------CCeEEEEeCCCC----
Confidence 99986422111 1222222 224677 8999999999742211 11222222222 467999999965
Q ss_pred chhhcchHHHHHHh
Q 046721 223 KKDIGNLAEFISVM 236 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~ 236 (1068)
.++.++...|...
T Consensus 151 -~gi~~l~~~l~~~ 163 (189)
T 4dsu_A 151 -QGVDDAFYTLVRE 163 (189)
T ss_dssp -TTHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHH
Confidence 5566666555443
No 51
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.42 E-value=8.5e-13 Score=132.69 Aligned_cols=150 Identities=12% Similarity=0.091 Sum_probs=95.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCC-CCce---eccEEEEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLK-VPEV---RGPVTVVS-GKKRRLQFVECPND--ING-MIDCAKFADLALL 146 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~-~~tt---~~~Iti~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLl 146 (1068)
.+..|+|+|.+|+|||||+++|++...... ..+. ....++.. ....++.|+||||. +.. ....+..+|++||
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 90 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEE
Confidence 457899999999999999999998642221 1111 11111222 23568999999994 334 4556788999999
Q ss_pred EEeCCCCCchh-HHHHHHHHHhC---CCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 147 LIDASHGFEME-TFEFLNLMQNH---GLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 147 VIDas~g~e~~-t~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
|+|++.+.... ...++..+... ++| +++|+||+|+..... ......+..+ . .+.++|++||+++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~~~~~~~~~~-~------~~~~~~~~Sa~~g--- 159 (181)
T 2efe_B 91 VFDVTNQASFERAKKWVQELQAQGNPNMV-MALAGNKSDLLDARKVTAEDAQTYAQ-E------NGLFFMETSAKTA--- 159 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSCHHHHHHHHH-H------TTCEEEECCSSSC---
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccccCCHHHHHHHHH-H------cCCEEEEEECCCC---
Confidence 99998654322 23445555443 555 899999999974221 1122222211 1 2568999999865
Q ss_pred CchhhcchHHHHHHhh
Q 046721 222 TKKDIGNLAEFISVMK 237 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~~k 237 (1068)
.++..+...|....
T Consensus 160 --~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 160 --TNVKEIFYEIARRL 173 (181)
T ss_dssp --TTHHHHHHHHHHTC
T ss_pred --CCHHHHHHHHHHHH
Confidence 66777777775544
No 52
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.42 E-value=1.3e-12 Score=152.50 Aligned_cols=154 Identities=19% Similarity=0.298 Sum_probs=106.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCC-----h----------hHH
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPND-----I----------NGM 134 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd-----l----------~sm 134 (1068)
..+..|+|||+||||||||+|+|++.. ++..+.+|+.++. .+...+..+.++||||- + ...
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 346899999999999999999999873 4455555554433 22334568999999992 1 123
Q ss_pred HHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEE
Q 046721 135 IDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKL 213 (1068)
Q Consensus 135 ld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~I 213 (1068)
+.++..||++|+|+|++.+...+...++..+...|.| +|+|+||+|+..... ......+.+...+. ...+++++++
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~-~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 334 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRA-SVVVFNKWDLVVHREKRYDEFTKLFREKLY--FIDYSPLIFT 334 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSTTGGGCHHHHHHHHHHHCG--GGTTSCEEEC
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCCCchhhHHHHHHHHHHHHhc--cCCCCcEEEE
Confidence 5677899999999999998887777788888888988 899999999985321 13334444443331 2356789999
Q ss_pred ecccCCcCCchhhcchHHHHHH
Q 046721 214 SGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 214 SAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
||++| ..+..|...|..
T Consensus 335 SA~~g-----~gv~~l~~~i~~ 351 (439)
T 1mky_A 335 SADKG-----WNIDRMIDAMNL 351 (439)
T ss_dssp BTTTT-----BSHHHHHHHHHH
T ss_pred ECCCC-----CCHHHHHHHHHH
Confidence 99976 556666655543
No 53
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.42 E-value=1.1e-12 Score=129.38 Aligned_cols=149 Identities=12% Similarity=0.117 Sum_probs=92.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccc-cCCCCceeccEE--EEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYT-KLKVPEVRGPVT--VVS-GKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~-~~~~~tt~~~It--i~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
++..|+|+|.+|+|||||+|+|++... .....++...+. +.. +....+.|+||||. +.. ....+..+|++|+|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 457899999999999999999998642 222222222222 222 23458999999993 444 34457899999999
Q ss_pred EeCCCCCchhH-HHHHHHHH----hCCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 148 IDASHGFEMET-FEFLNLMQ----NHGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 148 IDas~g~e~~t-~eiL~~L~----~~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
+|++....... ...+..+. ..++| +++|+||+|+..... ........++.. +.++|.+||+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~--- 151 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQVSVEEAKNRADQW-------NVNYVETSAKTR--- 151 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGGGGCCSCHHHHHHHHHHH-------TCEEEECCTTTC---
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccccccCccCHHHHHHHHHHc-------CCeEEEeCCCCC---
Confidence 99985432111 12222222 23677 899999999974211 112222222222 458999999865
Q ss_pred CchhhcchHHHHHHh
Q 046721 222 TKKDIGNLAEFISVM 236 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~~ 236 (1068)
.++..+...|...
T Consensus 152 --~gi~~l~~~l~~~ 164 (168)
T 1u8z_A 152 --ANVDKVFFDLMRE 164 (168)
T ss_dssp --TTHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHH
Confidence 5666666665443
No 54
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=1.2e-12 Score=129.81 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=91.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcccc-CCCCceeccEE--E-EeCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTK-LKVPEVRGPVT--V-VSGKKRRLQFVECPND--ING-MIDCAKFADLALLLI 148 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~-~~~~tt~~~It--i-~~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVI 148 (1068)
...|+|+|.+|+|||||+|+|++.... ....+....+. + .......+.|+||||. +.. ....+..+|++|+|+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 82 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 82 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEE
Confidence 478999999999999999999986321 12222111111 1 1223457899999993 444 344578899999999
Q ss_pred eCCCCCchh-HHHHHHHHHh-----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 149 DASHGFEME-TFEFLNLMQN-----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 149 Das~g~e~~-t~eiL~~L~~-----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
|++...... ...++..+.. .++| +++|+||+|+.............+...+ +.++|++||+++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~~~v~~~~~~~~~~~~------~~~~~~~Sa~~~---- 151 (172)
T 2erx_A 83 SITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDESPSREVQSSEAEALARTW------KCAFMETSAKLN---- 151 (172)
T ss_dssp ETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGGCCSCHHHHHHHHHHH------TCEEEECBTTTT----
T ss_pred ECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEccccccccccCHHHHHHHHHHh------CCeEEEecCCCC----
Confidence 998543221 1233333332 3677 8999999998742111011111121121 468999999865
Q ss_pred chhhcchHHHHHHh
Q 046721 223 KKDIGNLAEFISVM 236 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~ 236 (1068)
.++..+...|...
T Consensus 152 -~gi~~l~~~l~~~ 164 (172)
T 2erx_A 152 -HNVKELFQELLNL 164 (172)
T ss_dssp -BSHHHHHHHHHHT
T ss_pred -cCHHHHHHHHHHH
Confidence 5667777666543
No 55
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.41 E-value=6.8e-13 Score=155.02 Aligned_cols=147 Identities=20% Similarity=0.261 Sum_probs=97.8
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCC-------hh----H-HHHHHHh
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPND-------IN----G-MIDCAKF 140 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd-------l~----s-mld~akv 140 (1068)
+.|+|||.||||||||+|+|++.. +...+.+|+..+. .+...+..+++|||||- +. . +..++..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 379999999999999999999863 3445555554443 33345678999999992 11 1 3456789
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCc
Q 046721 141 ADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGK 220 (1068)
Q Consensus 141 ADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~ 220 (1068)
||+||||+|++.+++.....+..++...++| +|+|+||+|+... ...... .. ++. .....++++||++|
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p-~ilv~NK~D~~~~--~~~~~~---~~-~~~--lg~~~~~~iSA~~g-- 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLRKSTVD-TILVANKAENLRE--FEREVK---PE-LYS--LGFGEPIPVSAEHN-- 150 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHHHTCC-EEEEEESCCSHHH--HHHHTH---HH-HGG--GSSCSCEECBTTTT--
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEeCCCCccc--cHHHHH---HH-HHh--cCCCCEEEEeccCC--
Confidence 9999999999999888777888888888998 8999999998531 011110 11 221 12336799999966
Q ss_pred CCchhhcchHHHHHHhh
Q 046721 221 YTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 221 y~~~ei~nLlR~I~~~k 237 (1068)
.++.+|...|....
T Consensus 151 ---~gv~~L~~~i~~~l 164 (439)
T 1mky_A 151 ---INLDTMLETIIKKL 164 (439)
T ss_dssp ---BSHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHhc
Confidence 56666776665443
No 56
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.41 E-value=7.9e-13 Score=135.22 Aligned_cols=156 Identities=14% Similarity=0.135 Sum_probs=96.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccC-C-CCceeccEEEEeCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKL-K-VPEVRGPVTVVSGKKRRLQFVECPND--INGM-IDCAKFADLALLLI 148 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~-~-~~tt~~~Iti~~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVI 148 (1068)
.++..|+|+|.+|||||||+++|++..... . ..+....+..+......+.|+||||. +..+ ...+..+|++|||+
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 94 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVV 94 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEE
Confidence 345789999999999999999999874322 1 22221111233456789999999994 4443 33468899999999
Q ss_pred eCCCCCchhH-HHHHHHHHhC-----------CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecc
Q 046721 149 DASHGFEMET-FEFLNLMQNH-----------GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGL 216 (1068)
Q Consensus 149 Das~g~e~~t-~eiL~~L~~~-----------GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl 216 (1068)
|++.+..-.. ...+..+... ++| +|+|+||+|+.... ....+.+.+...... -..+.++|.+||+
T Consensus 95 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 171 (199)
T 4bas_A 95 DSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP-FLFFANKMDAAGAK-TAAELVEILDLTTLM-GDHPFVIFASNGL 171 (199)
T ss_dssp ETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCC-EEEEEECTTSTTCC-CHHHHHHHHTHHHHH-TTSCEEEEECBTT
T ss_pred ECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCC-EEEEEECcCCCCCC-CHHHHHHHhcchhhc-cCCeeEEEEeeCC
Confidence 9987533221 1233333222 777 89999999998631 122232222211100 1135689999999
Q ss_pred cCCcCCchhhcchHHHHHHhh
Q 046721 217 IQGKYTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 217 ~g~~y~~~ei~nLlR~I~~~k 237 (1068)
++ .++.++...|....
T Consensus 172 ~g-----~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 172 KG-----TGVHEGFSWLQETA 187 (199)
T ss_dssp TT-----BTHHHHHHHHHHHH
T ss_pred Cc-----cCHHHHHHHHHHHH
Confidence 65 56666766665443
No 57
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.41 E-value=1e-12 Score=131.63 Aligned_cols=150 Identities=19% Similarity=0.226 Sum_probs=92.9
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE-EEe--CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT-VVS--GKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It-i~~--~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
.+..|+|+|.+|+|||||+|+|++.. ......++...+. ... +....+.|+||||. +.. ....+..+|++|+|
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v 87 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLV 87 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEE
Confidence 34789999999999999999999873 2223333322222 122 22468899999993 333 44567889999999
Q ss_pred EeCCCCCchhH--H---HHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 148 IDASHGFEMET--F---EFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 148 IDas~g~e~~t--~---eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
+|++....... . .++..+...++| +|+|+||+|+.............+... .+.++|.+||++|
T Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~~------~~~~~~~~Sa~~~---- 156 (181)
T 2fn4_A 88 FAINDRQSFNEVGKLFTQILRVKDRDDFP-VVLVGNKADLESQRQVPRSEASAFGAS------HHVAYFEASAKLR---- 156 (181)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTSSCCC-EEEEEECGGGGGGCCSCHHHHHHHHHH------TTCEEEECBTTTT----
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccCHHHHHHHHHH------cCCeEEEecCCCC----
Confidence 99986422111 1 233333335777 899999999975211101111122111 2568999999865
Q ss_pred chhhcchHHHHHHh
Q 046721 223 KKDIGNLAEFISVM 236 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~ 236 (1068)
.++..+...|...
T Consensus 157 -~gv~~l~~~l~~~ 169 (181)
T 2fn4_A 157 -LNVDEAFEQLVRA 169 (181)
T ss_dssp -BSHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHH
Confidence 5566666555443
No 58
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.41 E-value=1.4e-12 Score=130.68 Aligned_cols=152 Identities=14% Similarity=0.038 Sum_probs=94.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccC-CCCcee-cc--EEEEeC--CCeeEEEEeCCCC--hhH-HHHHHHhcCEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVR-GP--VTVVSG--KKRRLQFVECPND--ING-MIDCAKFADLA 144 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~-~~--Iti~~~--~k~rl~fIDtPGd--l~s-mld~akvADlV 144 (1068)
..+..|+|+|.+|+|||||+++|++..... ...++. .. ..+... ....+.|+||||. +.. ....+..||++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 346789999999999999999999763211 111110 01 112222 2478999999993 333 45567899999
Q ss_pred EEEEeCCCCCchhH-HHHHHHHHh-----CCCCcEEEEEeCCCcCCcHHH-HHHHHHHHHHHhcccccCCCeEEEEeccc
Q 046721 145 LLLIDASHGFEMET-FEFLNLMQN-----HGLPNVMGVLTHLDKFTDKKK-LRKTKQHLKHRFGTELYHGAKLFKLSGLI 217 (1068)
Q Consensus 145 LlVIDas~g~e~~t-~eiL~~L~~-----~GlP~vIvVLNKiDlvk~~k~-l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~ 217 (1068)
|||+|++.+...+. ..++..+.. .+.|.+|+|+||+|+...... ..... .+...+ +.++|++||++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~-~~~~~~------~~~~~~~Sa~~ 156 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHL-RFCQEN------GFSSHFVSAKT 156 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHH-HHHHHH------TCEEEEECTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHH-HHHHHc------CCcEEEEeCCC
Confidence 99999986433221 133333333 267768899999999642110 11122 221222 46899999996
Q ss_pred CCcCCchhhcchHHHHHHhh
Q 046721 218 QGKYTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 218 g~~y~~~ei~nLlR~I~~~k 237 (1068)
| .++..+...|....
T Consensus 157 ~-----~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 157 G-----DSVFLCFQKVAAEI 171 (178)
T ss_dssp C-----TTHHHHHHHHHHHH
T ss_pred C-----CCHHHHHHHHHHHH
Confidence 5 66777777765544
No 59
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.41 E-value=9e-13 Score=134.79 Aligned_cols=152 Identities=11% Similarity=0.113 Sum_probs=96.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcccc-CCCCceeccEEEEeCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEEeCC
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTK-LKVPEVRGPVTVVSGKKRRLQFVECPND--ING-MIDCAKFADLALLLIDAS 151 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~-~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVIDas 151 (1068)
+..|+|+|.+|+|||||+++|++.... ....+....+..+......+.|+||||. +.. ....+..||++|||+|++
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~ 101 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA 101 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETT
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECC
Confidence 478999999999999999999976422 2222221112223445789999999994 333 445578999999999998
Q ss_pred CCCc--hhHHHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhh
Q 046721 152 HGFE--METFEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDI 226 (1068)
Q Consensus 152 ~g~e--~~t~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei 226 (1068)
..-. .....+..++.. .++| +|+|+||+|+.... ....+.+.+...+ ....+.++|.+||++| .++
T Consensus 102 ~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~SA~~g-----~gv 172 (188)
T 1zd9_A 102 DQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLPGAL-DEKELIEKMNLSA--IQDREICCYSISCKEK-----DNI 172 (188)
T ss_dssp CGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTCC-CHHHHHHHTTGGG--CCSSCEEEEECCTTTC-----TTH
T ss_pred CHHHHHHHHHHHHHHHhCcccCCCC-EEEEEECCCCccCC-CHHHHHHHhChhh--hccCCeeEEEEECCCC-----CCH
Confidence 6432 222233334432 5677 89999999997531 1122222221111 1113567899999865 566
Q ss_pred cchHHHHHHh
Q 046721 227 GNLAEFISVM 236 (1068)
Q Consensus 227 ~nLlR~I~~~ 236 (1068)
.++...|...
T Consensus 173 ~~l~~~l~~~ 182 (188)
T 1zd9_A 173 DITLQWLIQH 182 (188)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 7777666543
No 60
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.41 E-value=1.2e-12 Score=132.60 Aligned_cols=148 Identities=16% Similarity=0.118 Sum_probs=92.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCCCCceec-c---EEEEeCC-----------CeeEEEEeCCCC--hhH-HHH
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRG-P---VTVVSGK-----------KRRLQFVECPND--ING-MID 136 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~-~---Iti~~~~-----------k~rl~fIDtPGd--l~s-mld 136 (1068)
.+..|+|+|.+|+|||||+|+|++.........+.+ . ....... ...+.|+||||. +.. ...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 89 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTA 89 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHH
Confidence 357899999999999999999998642221111111 1 1112211 458999999994 444 445
Q ss_pred HHHhcCEEEEEEeCCCCCchhH-HHHHHHHHh----CCCCcEEEEEeCCCcCCcHHH-HHHHHHHHHHHhcccccCCCeE
Q 046721 137 CAKFADLALLLIDASHGFEMET-FEFLNLMQN----HGLPNVMGVLTHLDKFTDKKK-LRKTKQHLKHRFGTELYHGAKL 210 (1068)
Q Consensus 137 ~akvADlVLlVIDas~g~e~~t-~eiL~~L~~----~GlP~vIvVLNKiDlvk~~k~-l~~vkk~Lk~~~~~e~~~~~kV 210 (1068)
.+..||++|||+|++.+..... ..++..+.. .++| +|+|+||+|+...... ..... .+...+ +.++
T Consensus 90 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~-~~~~~~------~~~~ 161 (195)
T 3bc1_A 90 FFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKSDLEDQRAVKEEEAR-ELAEKY------GIPY 161 (195)
T ss_dssp TTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC-EEEEEECTTCGGGCCSCHHHHH-HHHHHH------TCCE
T ss_pred HHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccCHHHHH-HHHHHc------CCCE
Confidence 5789999999999986543322 234444433 4667 8999999999742111 11222 222222 4589
Q ss_pred EEEecccCCcCCchhhcchHHHHHH
Q 046721 211 FKLSGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 211 f~ISAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
|.+||+++ .++..+...|..
T Consensus 162 ~~~Sa~~~-----~~v~~l~~~l~~ 181 (195)
T 3bc1_A 162 FETSAANG-----TNISHAIEMLLD 181 (195)
T ss_dssp EECCTTTC-----TTHHHHHHHHHH
T ss_pred EEEECCCC-----CCHHHHHHHHHH
Confidence 99999865 556666655543
No 61
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.41 E-value=1.4e-12 Score=132.09 Aligned_cols=142 Identities=18% Similarity=0.207 Sum_probs=94.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCC------hh-----HHHHHHH
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPND------IN-----GMIDCAK 139 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd------l~-----smld~ak 139 (1068)
+...|+|||.+|+|||||+|+|++.. +...+.++...+. .+...+..+.++||||. +. .++..+.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 35789999999999999999999863 2333344433333 22234567999999993 11 1345678
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhC---CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecc
Q 046721 140 FADLALLLIDASHGFEMETFEFLNLMQNH---GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGL 216 (1068)
Q Consensus 140 vADlVLlVIDas~g~e~~t~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl 216 (1068)
.||++|+|+|++.........++..+... ++| +|+|+||+|+..... .+.. ..+.++|++||+
T Consensus 83 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~-----------~~~~--~~~~~~~~~SA~ 148 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLP-ITVVRNKADITGETL-----------GMSE--VNGHALIRLSAR 148 (172)
T ss_dssp TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCC-EEEEEECHHHHCCCC-----------EEEE--ETTEEEEECCTT
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCC-EEEEEECccCCcchh-----------hhhh--ccCCceEEEeCC
Confidence 99999999999876554444455444432 577 899999999854210 0111 135689999999
Q ss_pred cCCcCCchhhcchHHHHHH
Q 046721 217 IQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 217 ~g~~y~~~ei~nLlR~I~~ 235 (1068)
++ ..+..+...|..
T Consensus 149 ~g-----~gv~~l~~~l~~ 162 (172)
T 2gj8_A 149 TG-----EGVDVLRNHLKQ 162 (172)
T ss_dssp TC-----TTHHHHHHHHHH
T ss_pred CC-----CCHHHHHHHHHH
Confidence 65 566666666643
No 62
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.41 E-value=2.2e-12 Score=130.37 Aligned_cols=150 Identities=14% Similarity=0.163 Sum_probs=91.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc-cCCCCceeccEE-EEe--CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT-KLKVPEVRGPVT-VVS--GKKRRLQFVECPND--ING-MIDCAKFADLALL 146 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~-~~~~~tt~~~It-i~~--~~k~rl~fIDtPGd--l~s-mld~akvADlVLl 146 (1068)
.+...|+|+|.+|+|||||+|+|++... .....++...+. ... +....+.|+||||. +.. ....+..+|++|+
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 95 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4567899999999999999999997632 222222221122 222 22445777999994 333 4456788999999
Q ss_pred EEeCCCCCch-----hHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecc-cCCc
Q 046721 147 LIDASHGFEM-----ETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGL-IQGK 220 (1068)
Q Consensus 147 VIDas~g~e~-----~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl-~g~~ 220 (1068)
|+|++.+..- ....++......++| +|+|+||+|+.............+...+ +.++|.+||+ ++
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~v~~~~~~~~~~~~------~~~~~~~Sa~~~~-- 166 (183)
T 3kkq_A 96 VYSVTDKASFEHVDRFHQLILRVKDRESFP-MILVANKVDLMHLRKVTRDQGKEMATKY------NIPYIETSAKDPP-- 166 (183)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCSTTCCSCHHHHHHHHHHH------TCCEEEEBCSSSC--
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCchhccCcCHHHHHHHHHHh------CCeEEEeccCCCC--
Confidence 9999864221 111233333345777 8999999998642111111122222222 4679999998 54
Q ss_pred CCchhhcchHHHHHH
Q 046721 221 YTKKDIGNLAEFISV 235 (1068)
Q Consensus 221 y~~~ei~nLlR~I~~ 235 (1068)
..+..+...|..
T Consensus 167 ---~~v~~l~~~l~~ 178 (183)
T 3kkq_A 167 ---LNVDKTFHDLVR 178 (183)
T ss_dssp ---BSHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHH
Confidence 455555555543
No 63
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.40 E-value=1.1e-12 Score=133.89 Aligned_cols=152 Identities=12% Similarity=0.117 Sum_probs=96.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccE-EEEeCCCeeEEEEeCCC--ChhH-HHHHHHhcCEEEEEEe
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPV-TVVSGKKRRLQFVECPN--DING-MIDCAKFADLALLLID 149 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~I-ti~~~~k~rl~fIDtPG--dl~s-mld~akvADlVLlVID 149 (1068)
....|+|+|.+|+|||||+|+|++.. .......+.+.. ..+...+..+.|+|||| .+.. ....+..||++|||+|
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 99 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVID 99 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEE
Confidence 45789999999999999999999875 111222222211 12334468999999999 3444 3345789999999999
Q ss_pred CCCC--CchhHHHHHHHHHh-----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccc-cCCCeEEEEecccCCcC
Q 046721 150 ASHG--FEMETFEFLNLMQN-----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTEL-YHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 150 as~g--~e~~t~eiL~~L~~-----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~-~~~~kVf~ISAl~g~~y 221 (1068)
++.. +......+..++.. .++| +|+|+||+|+.... ....+.+.+. + ..+ ..+.++|.+||+++
T Consensus 100 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~~~~~~~~~~--~-~~~~~~~~~~~~~Sa~~~--- 171 (190)
T 2h57_A 100 SSDRLRMVVAKEELDTLLNHPDIKHRRIP-ILFFANKMDLRDAV-TSVKVSQLLC--L-ENIKDKPWHICASDAIKG--- 171 (190)
T ss_dssp TTCHHHHHHHHHHHHHHHHSTTTTTSCCC-EEEEEECTTSTTCC-CHHHHHHHHT--G-GGCCSSCEEEEECBTTTT---
T ss_pred CCCHHHHHHHHHHHHHHHhChhhccCCCe-EEEEEeCcCcccCC-CHHHHHHHhC--h-hhccCCceEEEEccCCCC---
Confidence 9865 22222334444443 4667 89999999997531 1222332221 0 111 13568999999965
Q ss_pred CchhhcchHHHHHHh
Q 046721 222 TKKDIGNLAEFISVM 236 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~~ 236 (1068)
.++..+...|...
T Consensus 172 --~gi~~l~~~l~~~ 184 (190)
T 2h57_A 172 --EGLQEGVDWLQDQ 184 (190)
T ss_dssp --BTHHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHH
Confidence 5666676666443
No 64
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.40 E-value=3.1e-12 Score=125.56 Aligned_cols=147 Identities=18% Similarity=0.228 Sum_probs=91.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc-cCCCCceeccEE--EEe-CCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT-KLKVPEVRGPVT--VVS-GKKRRLQFVECPND--INGM-IDCAKFADLALLLI 148 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~-~~~~~tt~~~It--i~~-~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVI 148 (1068)
+..|+|+|.+|+|||||+|+|++... .....++...+. +.. +....+.|+||||. +..+ ...+..+|++|+|+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 82 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence 36799999999999999999998632 222222221111 222 23567899999993 4444 34678999999999
Q ss_pred eCCCCCchhH-HHHHHHHHh----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 149 DASHGFEMET-FEFLNLMQN----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 149 Das~g~e~~t-~eiL~~L~~----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
|++....... ..++..+.. .++| +++|+||+|+......... ...+...+ +.++|.+||+++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~-~~~~~~~~------~~~~~~~Sa~~~----- 149 (166)
T 2ce2_X 83 AINNTKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAARTVESRQ-AQDLARSY------GIPYIETSAKTR----- 149 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCCSCHHH-HHHHHHHH------TCCEEEECTTTC-----
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhhcccCHHH-HHHHHHHc------CCeEEEecCCCC-----
Confidence 9985432211 223333322 3677 8999999998752111112 22222222 458999999865
Q ss_pred hhhcchHHHHHH
Q 046721 224 KDIGNLAEFISV 235 (1068)
Q Consensus 224 ~ei~nLlR~I~~ 235 (1068)
.++..+...|..
T Consensus 150 ~gi~~l~~~l~~ 161 (166)
T 2ce2_X 150 QGVEDAFYTLVR 161 (166)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 566666666644
No 65
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.40 E-value=1.5e-12 Score=129.14 Aligned_cols=148 Identities=16% Similarity=0.170 Sum_probs=82.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcccc---CCCCceeccEEEEeCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEEe
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTK---LKVPEVRGPVTVVSGKKRRLQFVECPND--INGM-IDCAKFADLALLLID 149 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~---~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVID 149 (1068)
...|+|+|.+|||||||+|+|++.... ....++........+....+.++||||. +..+ ...+..+|++|+|+|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 357999999999999999999876432 2222222111122344668899999993 3333 334688999999999
Q ss_pred CCCCCchhH-HHHHHHHHh----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 150 ASHGFEMET-FEFLNLMQN----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 150 as~g~e~~t-~eiL~~L~~----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
++..-.-.. ...+..+.. .++| +|+|+||+|+.............+... .+.++|.+||++| .
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~-----~ 149 (166)
T 3q72_A 82 VTDKGSFEKASELRVQLRRARQTDDVP-IILVGNKSDLVRSREVSVDEGRACAVV------FDCKFIETSAALH-----H 149 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSCCSCHHHHHHHHHH------TTCEEEECBGGGT-----B
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccccccccccCHHHHHHHHHH------hCCcEEEeccCCC-----C
Confidence 985432111 123333332 3677 899999999975321111111222222 2578999999965 5
Q ss_pred hhcchHHHHHH
Q 046721 225 DIGNLAEFISV 235 (1068)
Q Consensus 225 ei~nLlR~I~~ 235 (1068)
++..+...|..
T Consensus 150 gi~~l~~~l~~ 160 (166)
T 3q72_A 150 NVQALFEGVVR 160 (166)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 56666655544
No 66
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.39 E-value=1.9e-12 Score=130.43 Aligned_cols=149 Identities=12% Similarity=0.125 Sum_probs=92.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccc-cCCCCceeccEE--EEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYT-KLKVPEVRGPVT--VVS-GKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~-~~~~~tt~~~It--i~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
++..|+|+|.+|+|||||+|+|++... .....++...+. +.. +....+.|+||||. +.. ....+..+|++|+|
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 96 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEE
Confidence 457899999999999999999997632 222222222222 222 22458999999993 444 34457899999999
Q ss_pred EeCCCCCchhH-HH----HHHHHHhCCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 148 IDASHGFEMET-FE----FLNLMQNHGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 148 IDas~g~e~~t-~e----iL~~L~~~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
+|++....... .. ++..+...++| +|+|+||+|+..... ......+.++. .+.++|.+||+++
T Consensus 97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~--- 165 (187)
T 2a9k_A 97 FSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQVSVEEAKNRAEQ-------WNVNYVETSAKTR--- 165 (187)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGGGGCCSCHHHHHHHHHH-------TTCEEEECCTTTC---
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccCccCHHHHHHHHHH-------cCCeEEEeCCCCC---
Confidence 99985432111 12 22222223777 899999999874211 11222222221 1468999999865
Q ss_pred CchhhcchHHHHHHh
Q 046721 222 TKKDIGNLAEFISVM 236 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~~ 236 (1068)
..+..+...|...
T Consensus 166 --~gi~~l~~~l~~~ 178 (187)
T 2a9k_A 166 --ANVDKVFFDLMRE 178 (187)
T ss_dssp --TTHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHH
Confidence 5666666665443
No 67
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.39 E-value=1.7e-12 Score=128.54 Aligned_cols=148 Identities=15% Similarity=0.196 Sum_probs=91.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccC-CCCce---eccEEEE-eCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEV---RGPVTVV-SGKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt---~~~Iti~-~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
+..|+|+|.+|+|||||+++|++..... ...+. .....+. ......+.|+||||. +.. ....+..+|++|+|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 4689999999999999999999864221 11111 1111122 223568999999994 444 45567899999999
Q ss_pred EeCCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCc---HHHHHHHHHHHHHHhcccccCCCeEEEEecccCCc
Q 046721 148 IDASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTD---KKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGK 220 (1068)
Q Consensus 148 IDas~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~---~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~ 220 (1068)
+|++.+..... ...+..+.. .++| +++|+||+|+... ..........+.... +.++|++||+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~------~~~~~~~Sa~~~-- 153 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQASKDII-IALVGNKIDXLQEGGERKVAREEGEKLAEEK------GLLFFETSAKTG-- 153 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSSCCCCSCHHHHHHHHHHH------TCEEEECCTTTC--
T ss_pred EecCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCccccccccCCCHHHHHHHHHHc------CCEEEEEeCCCC--
Confidence 99986532222 123333332 3566 8899999999743 111111112221111 468999999865
Q ss_pred CCchhhcchHHHHHH
Q 046721 221 YTKKDIGNLAEFISV 235 (1068)
Q Consensus 221 y~~~ei~nLlR~I~~ 235 (1068)
.++..+...|..
T Consensus 154 ---~gi~~l~~~l~~ 165 (170)
T 1ek0_A 154 ---ENVNDVFLGIGE 165 (170)
T ss_dssp ---TTHHHHHHHHHT
T ss_pred ---CCHHHHHHHHHH
Confidence 566666666643
No 68
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.39 E-value=2.1e-12 Score=128.07 Aligned_cols=150 Identities=14% Similarity=0.113 Sum_probs=94.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCCCCceec----cEEEE-eCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRG----PVTVV-SGKKRRLQFVECPND--ING-MIDCAKFADLALL 146 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~----~Iti~-~~~k~rl~fIDtPGd--l~s-mld~akvADlVLl 146 (1068)
....|+|+|.+|+|||||+|+|++.........+.+ ...+. ......+.|+||||. +.. ....+..+|++|+
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 84 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence 357899999999999999999998742221111111 11121 223578999999994 444 4456789999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHhC---CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 147 LIDASHGFEMET-FEFLNLMQNH---GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 147 VIDas~g~e~~t-~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
|+|++.+..... ..++..+... ++| +++|+||+|+.............+...+ +.++|++||+++
T Consensus 85 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~~v~~~~~~~~~~~~------~~~~~~~Sa~~~---- 153 (170)
T 1z0j_A 85 VYDITKEETFSTLKNWVRELRQHGPPSIV-VAIAGNKCDLTDVREVMERDAKDYADSI------HAIFVETSAKNA---- 153 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTSE-EEEEEECTTCGGGCCSCHHHHHHHHHHT------TCEEEECBTTTT----
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECCccccccccCHHHHHHHHHHc------CCEEEEEeCCCC----
Confidence 999986543222 2445555543 344 8889999999753211111122222221 568999999865
Q ss_pred chhhcchHHHHHHh
Q 046721 223 KKDIGNLAEFISVM 236 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~ 236 (1068)
.++..+...|...
T Consensus 154 -~~i~~l~~~i~~~ 166 (170)
T 1z0j_A 154 -ININELFIEISRR 166 (170)
T ss_dssp -BSHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHH
Confidence 5666677666543
No 69
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.39 E-value=8.5e-13 Score=133.96 Aligned_cols=155 Identities=11% Similarity=0.090 Sum_probs=96.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEEeC
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--ING-MIDCAKFADLALLLIDA 150 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVIDa 150 (1068)
..+..|+|+|.+|+|||||+|+|++........|....+..+......+.++||||. +.. ....+..+|++|+|+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 95 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEET
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEEC
Confidence 356899999999999999999999875222222221111122235789999999994 333 33446889999999999
Q ss_pred CCCCchhH--HHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchh
Q 046721 151 SHGFEMET--FEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKD 225 (1068)
Q Consensus 151 s~g~e~~t--~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~e 225 (1068)
+.+..... ..+..++.. .+.| +|+|+||+|+.... ....+.+.+.... ....+.++|.+||+++ .+
T Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~-----~g 166 (186)
T 1ksh_A 96 ADRQRMQDCQRELQSLLVEERLAGAT-LLIFANKQDLPGAL-SCNAIQEALELDS--IRSHHWRIQGCSAVTG-----ED 166 (186)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCC-CHHHHHHHTTGGG--CCSSCEEEEECCTTTC-----TT
T ss_pred cCHHHHHHHHHHHHHHHhChhcCCCc-EEEEEeCccCCCCC-CHHHHHHHhChhh--ccCCceEEEEeeCCCC-----CC
Confidence 86533222 233333332 3666 89999999997532 1222222221000 0123568999999865 56
Q ss_pred hcchHHHHHHhh
Q 046721 226 IGNLAEFISVMK 237 (1068)
Q Consensus 226 i~nLlR~I~~~k 237 (1068)
+.++...|....
T Consensus 167 i~~l~~~l~~~i 178 (186)
T 1ksh_A 167 LLPGIDWLLDDI 178 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677776665544
No 70
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.39 E-value=7.5e-13 Score=154.49 Aligned_cols=145 Identities=15% Similarity=0.186 Sum_probs=94.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCCh----------hH-HHHHHHhc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPNDI----------NG-MIDCAKFA 141 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGdl----------~s-mld~akvA 141 (1068)
+.|+|||.||||||||+|+|++.. +...+.+|+..+. .....+..++++||||.. .. +..++..|
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 579999999999999999999874 2334444544443 223456789999999932 12 34567899
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 142 DLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 142 DlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
|++|||+|++.+++....++...|...+.| +|+|+||+|+...... +. .++. .....++++||++|
T Consensus 84 d~il~vvD~~~~~~~~d~~~~~~l~~~~~p-vilv~NK~D~~~~~~~-------~~-~~~~--lg~~~~~~iSA~~g--- 149 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADEEVAKILYRTKKP-VVLAVNKLDNTEMRAN-------IY-DFYS--LGFGEPYPISGTHG--- 149 (436)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHTTCCSC-EEEEEECCCC-----C-------CC-SSGG--GSSCCCEECBTTTT---
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCccchhh-------HH-HHHH--cCCCCeEEEeCcCC---
Confidence 999999999999988888888888888988 8999999998752110 00 0111 12237899999965
Q ss_pred CchhhcchHHHHHHhh
Q 046721 222 TKKDIGNLAEFISVMK 237 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~~k 237 (1068)
.++..|...|....
T Consensus 150 --~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 150 --LGLGDLLDAVAEHF 163 (436)
T ss_dssp --BTHHHHHHHHHHTG
T ss_pred --CChHHHHHHHHHhc
Confidence 66777777775544
No 71
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=1.5e-12 Score=130.85 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=91.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcccc--CCCCceeccEE--E-E-eCCCeeEEEEeCCCC--hhH-HHHHHHhcCEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTK--LKVPEVRGPVT--V-V-SGKKRRLQFVECPND--ING-MIDCAKFADLA 144 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~--~~~~tt~~~It--i-~-~~~k~rl~fIDtPGd--l~s-mld~akvADlV 144 (1068)
..+..|+|+|.+|+|||||+++|++.... ....++...+. . . .+....+.|+||||. +.. ....+..+|++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 87 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence 34578999999999999999999986421 11122111111 1 1 122458999999993 333 34456889999
Q ss_pred EEEEeCCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCC
Q 046721 145 LLLIDASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQG 219 (1068)
Q Consensus 145 LlVIDas~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~ 219 (1068)
|||+|++.+..... ...+..+.. .++| +++|+||+|+..... ...... .+.... +.++|++||+++
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~-~~~~~~------~~~~~~~Sa~~~- 158 (180)
T 2g6b_A 88 LLLYDVTNKASFDNIQAWLTEIHEYAQHDVA-LMLLGNKVDSAHERVVKREDGE-KLAKEY------GLPFMETSAKTG- 158 (180)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECCSTTSCCCSCHHHHH-HHHHHH------TCCEEECCTTTC-
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccCcccccCHHHHH-HHHHHc------CCeEEEEeCCCC-
Confidence 99999986433222 233443333 4666 899999999975321 111122 222221 458999999865
Q ss_pred cCCchhhcchHHHHHHhh
Q 046721 220 KYTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 220 ~y~~~ei~nLlR~I~~~k 237 (1068)
.++..+...|....
T Consensus 159 ----~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 159 ----LNVDLAFTAIAKEL 172 (180)
T ss_dssp ----TTHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHH
Confidence 56666666665443
No 72
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.38 E-value=2.1e-12 Score=127.76 Aligned_cols=147 Identities=14% Similarity=0.184 Sum_probs=91.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCC-CCceeccE---EEEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLK-VPEVRGPV---TVVS-GKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~-~~tt~~~I---ti~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
+..|+|+|.+|+|||||+|+|++...... ..+....+ .+.. +....+.|+||||. +.. ....+..+|++|+|
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 84 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 84 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEE
Confidence 57899999999999999999998643222 11111111 1222 23568999999993 333 45567899999999
Q ss_pred EeCCCCCchhH-HHHHHHHHh--CCCCcEEEEEeCCCcCCcHHH-HHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 148 IDASHGFEMET-FEFLNLMQN--HGLPNVMGVLTHLDKFTDKKK-LRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 148 IDas~g~e~~t-~eiL~~L~~--~GlP~vIvVLNKiDlvk~~k~-l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
+|++....... ...+..+.. .+.| +++|+||+|+...... .....+ +...+ +.++|++||+++
T Consensus 85 ~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~-~~~~~------~~~~~~~Sa~~~----- 151 (168)
T 1z2a_A 85 FSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDSCIKNEEAEG-LAKRL------KLRFYRTSVKED----- 151 (168)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGCSSCHHHHHH-HHHHH------TCEEEECBTTTT-----
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccCcccccCHHHHHH-HHHHc------CCeEEEEecCCC-----
Confidence 99986432211 123333332 3677 8999999998752111 112222 22222 468999999865
Q ss_pred hhhcchHHHHHH
Q 046721 224 KDIGNLAEFISV 235 (1068)
Q Consensus 224 ~ei~nLlR~I~~ 235 (1068)
..+..+...|..
T Consensus 152 ~~i~~l~~~l~~ 163 (168)
T 1z2a_A 152 LNVSEVFKYLAE 163 (168)
T ss_dssp BSSHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 556666666544
No 73
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.38 E-value=2.9e-12 Score=126.82 Aligned_cols=149 Identities=11% Similarity=0.107 Sum_probs=92.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCC----CCceeccEEEEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLK----VPEVRGPVTVVS-GKKRRLQFVECPND--ING-MIDCAKFADLALL 146 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~----~~tt~~~Iti~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLl 146 (1068)
.+..|+|+|.+|+|||||+++|++...... ...+....++.. .....+.|+||||. +.. ....+..+|++||
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence 357899999999999999999997632221 111111111222 23668999999994 444 4556788999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHhC---CCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 147 LIDASHGFEMET-FEFLNLMQNH---GLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 147 VIDas~g~e~~t-~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
|+|++.+..... ..++..+... ++| +++|+||+|+..... ......+... . .+.++|.+||++|
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~Dl~~~~~~~~~~~~~~~~-~------~~~~~~~~Sa~~g--- 153 (170)
T 1r2q_A 85 VYDITNEESFARAKNWVKELQRQASPNIV-IALSGNKADLANKRAVDFQEAQSYAD-D------NSLLFMETSAKTS--- 153 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSCHHHHHHHHH-H------TTCEEEECCTTTC---
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCccccccCHHHHHHHHH-H------cCCeEEEEeCCCC---
Confidence 999986532222 2334434332 455 788899999864211 1122222111 1 2568999999865
Q ss_pred CchhhcchHHHHHHh
Q 046721 222 TKKDIGNLAEFISVM 236 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~~ 236 (1068)
.++..+...|...
T Consensus 154 --~gi~~l~~~i~~~ 166 (170)
T 1r2q_A 154 --MNVNEIFMAIAKK 166 (170)
T ss_dssp --TTHHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHH
Confidence 5666777666543
No 74
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.38 E-value=3.2e-12 Score=127.75 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=92.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcccc-CCCCceeccEE---EEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTK-LKVPEVRGPVT---VVS-GKKRRLQFVECPND--ING-MIDCAKFADLALL 146 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~-~~~~tt~~~It---i~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLl 146 (1068)
....|+|+|.+|+|||||+|+|++.... ....++...+. +.. .....+.|+||||. +.. ....++.+|++||
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEE
Confidence 3578999999999999999999986422 22222211111 222 23568999999993 334 4556789999999
Q ss_pred EEeCCCCCchhHH-HHHHHHHh---CCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 147 LIDASHGFEMETF-EFLNLMQN---HGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 147 VIDas~g~e~~t~-eiL~~L~~---~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
|+|++.+...... .++..+.. .++| +++|+||+|+..... ......+.++. .+.++|++||+++
T Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~--- 162 (179)
T 1z0f_A 94 VYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEAQRDVTYEEAKQFAEE-------NGLLFLEASAKTG--- 162 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCHHHHHHHHHH-------TTCEEEECCTTTC---
T ss_pred EEeCcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccCHHHHHHHHHH-------cCCEEEEEeCCCC---
Confidence 9999865332221 23333332 4566 899999999964211 11222222211 1568999999865
Q ss_pred CchhhcchHHHHHH
Q 046721 222 TKKDIGNLAEFISV 235 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~ 235 (1068)
..+..+...|..
T Consensus 163 --~gi~~l~~~l~~ 174 (179)
T 1z0f_A 163 --ENVEDAFLEAAK 174 (179)
T ss_dssp --TTHHHHHHHHHH
T ss_pred --CCHHHHHHHHHH
Confidence 556666655544
No 75
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.38 E-value=1.5e-12 Score=141.73 Aligned_cols=147 Identities=19% Similarity=0.221 Sum_probs=96.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCCCeeEEEEeCCCC--hhH------HH-HHH--Hhc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGKKRRLQFVECPND--ING------MI-DCA--KFA 141 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd--l~s------ml-d~a--kvA 141 (1068)
...|+|+|.+|||||||+|+|++.. +...+.++..... .+......+.|+||||. +.. +. ..+ ..+
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 84 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDA 84 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCC
Confidence 4679999999999999999999863 2222222222112 22334679999999993 221 22 222 479
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 142 DLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 142 DlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
|++|+|+|++.. + ....++..+...++| +|+|+||+|+.... .+....+.+...+ +.++|++||++|
T Consensus 85 d~ii~V~D~t~~-~-~~~~~~~~l~~~~~p-vilv~NK~Dl~~~~-~i~~~~~~l~~~l------g~~vi~~SA~~g--- 151 (258)
T 3a1s_A 85 DLVILVADSVNP-E-QSLYLLLEILEMEKK-VILAMTAIDEAKKT-GMKIDRYELQKHL------GIPVVFTSSVTG--- 151 (258)
T ss_dssp SEEEEEEETTSC-H-HHHHHHHHHHTTTCC-EEEEEECHHHHHHT-TCCBCHHHHHHHH------CSCEEECCTTTC---
T ss_pred CEEEEEeCCCch-h-hHHHHHHHHHhcCCC-EEEEEECcCCCCcc-chHHHHHHHHHHc------CCCEEEEEeeCC---
Confidence 999999999863 2 233455666678999 89999999986421 1111123333333 578999999865
Q ss_pred CchhhcchHHHHHHhh
Q 046721 222 TKKDIGNLAEFISVMK 237 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~~k 237 (1068)
.++..|...|....
T Consensus 152 --~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 152 --EGLEELKEKIVEYA 165 (258)
T ss_dssp --TTHHHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHHh
Confidence 66777777665543
No 76
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.38 E-value=3.9e-12 Score=132.39 Aligned_cols=108 Identities=14% Similarity=0.222 Sum_probs=69.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEE-EEeC-C-CeeEEEEeCCCC--hhH-HHH-HHHhcCEEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVT-VVSG-K-KRRLQFVECPND--ING-MID-CAKFADLALLL 147 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~It-i~~~-~-k~rl~fIDtPGd--l~s-mld-~akvADlVLlV 147 (1068)
....|+|+|.+|+|||||+++|++........++...+. +... . ...+.|+||||. +.. +.. .+..+|++|||
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v 85 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFV 85 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEE
Confidence 357899999999999999999998642221122211122 2222 2 578999999994 444 444 36899999999
Q ss_pred EeCCCCCchhHHH----HHHHHH-----hCCCCcEEEEEeCCCcCC
Q 046721 148 IDASHGFEMETFE----FLNLMQ-----NHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 148 IDas~g~e~~t~e----iL~~L~-----~~GlP~vIvVLNKiDlvk 184 (1068)
+|++. +...... +...+. ..++| +|+|+||+|+..
T Consensus 86 ~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 129 (214)
T 2fh5_B 86 VDSAA-FQREVKDVAEFLYQVLIDSMALKNSPS-LLIACNKQDIAM 129 (214)
T ss_dssp EETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCE-EEEEEECTTSTT
T ss_pred EECCC-cCHHHHHHHHHHHHHHhhhhhcccCCC-EEEEEECCCCCC
Confidence 99976 2222222 222222 13566 899999999975
No 77
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=1.8e-12 Score=132.99 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=95.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccC----CCCceeccEEEE-eCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKL----KVPEVRGPVTVV-SGKKRRLQFVECPND--ING-MIDCAKFADLALL 146 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~----~~~tt~~~Iti~-~~~k~rl~fIDtPGd--l~s-mld~akvADlVLl 146 (1068)
....|+|+|.+|+|||||+|+|++..... ++..+.....+. ......+.|+||||. +.. ....+..+|++||
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 101 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVI 101 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEE
Confidence 35789999999999999999999864221 112111111122 234678999999993 444 4556789999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHhC---CCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 147 LIDASHGFEMET-FEFLNLMQNH---GLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 147 VIDas~g~e~~t-~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
|+|++....... ..++..+... ++| +|+|+||+|+..... ......+.. .. .+.++|++||+++
T Consensus 102 V~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~v~~~~~~~~~-~~------~~~~~~~~Sa~~~--- 170 (192)
T 2fg5_A 102 VYDITKQDSFYTLKKWVKELKEHGPENIV-MAIAGNKCDLSDIREVPLKDAKEYA-ES------IGAIVVETSAKNA--- 170 (192)
T ss_dssp EEETTCTHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSCHHHHHHHH-HT------TTCEEEECBTTTT---
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccccCHHHHHHHH-HH------cCCEEEEEeCCCC---
Confidence 999986543222 2344444443 566 899999999974211 112222221 11 1568999999865
Q ss_pred CchhhcchHHHHHHhh
Q 046721 222 TKKDIGNLAEFISVMK 237 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~~k 237 (1068)
.++..+...|....
T Consensus 171 --~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 171 --INIEELFQGISRQI 184 (192)
T ss_dssp --BSHHHHHHHHHHTC
T ss_pred --cCHHHHHHHHHHHH
Confidence 66777777775543
No 78
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.37 E-value=3.4e-12 Score=131.17 Aligned_cols=149 Identities=12% Similarity=0.133 Sum_probs=92.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE--EEe-CCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT--VVS-GKKRRLQFVECPND--INGM-IDCAKFADLALLL 147 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It--i~~-~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlV 147 (1068)
+...|+|+|.+|+|||||+++|++.. ......++...+. +.. +....+.|+||||. +..+ ...+..+|++|+|
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v 92 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 92 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEE
Confidence 45789999999999999999999764 2222222222121 222 22458999999993 4443 4457889999999
Q ss_pred EeCCCCCchhH-HHHHHHHH----hCCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 148 IDASHGFEMET-FEFLNLMQ----NHGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 148 IDas~g~e~~t-~eiL~~L~----~~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
+|++....-.. ..++..+. ..++| +|+|+||+|+..... ......+.+... +.++|.+||++|
T Consensus 93 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~g--- 161 (206)
T 2bov_A 93 FSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQVSVEEAKNRAEQW-------NVNYVETSAKTR--- 161 (206)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCGGGCCSCHHHHHHHHHHH-------TCEEEEECTTTC---
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCccccccccHHHHHHHHHHh-------CCeEEEEeCCCC---
Confidence 99985422111 12222222 23677 899999999975211 122222222222 457999999965
Q ss_pred CchhhcchHHHHHHh
Q 046721 222 TKKDIGNLAEFISVM 236 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~~ 236 (1068)
.++..+...|...
T Consensus 162 --~gi~~l~~~l~~~ 174 (206)
T 2bov_A 162 --ANVDKVFFDLMRE 174 (206)
T ss_dssp --TTHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHH
Confidence 5566666555443
No 79
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=4e-12 Score=129.94 Aligned_cols=151 Identities=17% Similarity=0.223 Sum_probs=92.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccC-CCCceeccEE--E-EeCCCeeEEEEeCCC--ChhH-HHHHHHhcCEEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVRGPVT--V-VSGKKRRLQFVECPN--DING-MIDCAKFADLALL 146 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~~~It--i-~~~~k~rl~fIDtPG--dl~s-mld~akvADlVLl 146 (1068)
.....|+|+|.+|||||||+|+|++..... ...+....+. + .......+.|+|||| .+.. ....+..+|++|+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 446899999999999999999999863221 1122111111 1 122356899999999 3444 3445688999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHh-----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCc
Q 046721 147 LIDASHGFEMET-FEFLNLMQN-----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGK 220 (1068)
Q Consensus 147 VIDas~g~e~~t-~eiL~~L~~-----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~ 220 (1068)
|+|++....... ..++..+.. .++| +|+|+||+|+............ +...+ +.++|++||++|
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~-~~~~~------~~~~~~~Sa~~~-- 155 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQREVDTREAQA-VAQEW------KCAFMETSAKMN-- 155 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSSCSSCHHHHHH-HHHHH------TCEEEECBTTTT--
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCCccccCHHHHHH-HHHHh------CCeEEEEecCCC--
Confidence 999985322111 122332222 3667 8999999999752111112222 21121 458999999865
Q ss_pred CCchhhcchHHHHHHhh
Q 046721 221 YTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 221 y~~~ei~nLlR~I~~~k 237 (1068)
.++..+...|....
T Consensus 156 ---~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 156 ---YNVKELFQELLTLE 169 (199)
T ss_dssp ---BSHHHHHHHHHHHC
T ss_pred ---CCHHHHHHHHHHHH
Confidence 56777777765543
No 80
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.37 E-value=2.3e-12 Score=131.45 Aligned_cols=151 Identities=13% Similarity=0.125 Sum_probs=93.3
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCC-CCce-ec-cEE-EEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLK-VPEV-RG-PVT-VVS-GKKRRLQFVECPND--ING-MIDCAKFADLALL 146 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~-~~tt-~~-~It-i~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLl 146 (1068)
.+..|+|+|.+|+|||||+|+|++...... ..++ .. .+. +.. +....+.|+||||. +.. ....+..+|++||
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 94 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 94 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEE
Confidence 457899999999999999999998642211 1111 11 111 222 22468999999994 333 5566789999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHhC---CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 147 LIDASHGFEMET-FEFLNLMQNH---GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 147 VIDas~g~e~~t-~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
|+|++....... ...+..+... ++| +|+|+||+|+.............+...+ +.++|.+||+++
T Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~g---- 163 (196)
T 3tkl_A 95 VYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVVDYTTAKEFADSL------GIPFLETSAKNA---- 163 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSCHHHHHHHHHHT------TCCEEEECTTTC----
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccccCHHHHHHHHHHc------CCcEEEEeCCCC----
Confidence 999986432111 2334434332 566 8999999999753211111122222222 568999999865
Q ss_pred chhhcchHHHHHHhh
Q 046721 223 KKDIGNLAEFISVMK 237 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~k 237 (1068)
..+..+...|....
T Consensus 164 -~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 164 -TNVEQSFMTMAAEI 177 (196)
T ss_dssp -TTHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHH
Confidence 56666665554443
No 81
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.37 E-value=1.1e-12 Score=143.08 Aligned_cols=146 Identities=14% Similarity=0.213 Sum_probs=94.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc--cCCCCceeccEE-EEeCCCeeEEEEeCCC--ChhH------HHH-HH--Hhc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT--KLKVPEVRGPVT-VVSGKKRRLQFVECPN--DING------MID-CA--KFA 141 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~--~~~~~tt~~~It-i~~~~k~rl~fIDtPG--dl~s------mld-~a--kvA 141 (1068)
.+.|+|+|++|||||||+|+|++... +..+.++..... .....+..+.|+|||| ++.. +.. .+ ..+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNA 82 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCC
Confidence 47899999999999999999998732 222222222111 2333567899999999 2222 221 12 569
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhCC-CCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCc
Q 046721 142 DLALLLIDASHGFEMETFEFLNLMQNHG-LPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGK 220 (1068)
Q Consensus 142 DlVLlVIDas~g~e~~t~eiL~~L~~~G-lP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~ 220 (1068)
|++|+|+|++.+ .....++..+...+ +| +|+|+||+|+... .........+.+.+ +.+++++||++|
T Consensus 83 d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~-~~~~~~~~~l~~~l------g~~~~~~Sa~~g-- 150 (271)
T 3k53_A 83 DVIVDIVDSTCL--MRNLFLTLELFEMEVKN-IILVLNKFDLLKK-KGAKIDIKKMRKEL------GVPVIPTNAKKG-- 150 (271)
T ss_dssp SEEEEEEEGGGH--HHHHHHHHHHHHTTCCS-EEEEEECHHHHHH-HTCCCCHHHHHHHH------SSCEEECBGGGT--
T ss_pred cEEEEEecCCcc--hhhHHHHHHHHhcCCCC-EEEEEEChhcCcc-cccHHHHHHHHHHc------CCcEEEEEeCCC--
Confidence 999999999874 23344555555677 77 8999999998642 11111133344444 578999999865
Q ss_pred CCchhhcchHHHHHHh
Q 046721 221 YTKKDIGNLAEFISVM 236 (1068)
Q Consensus 221 y~~~ei~nLlR~I~~~ 236 (1068)
.++..+...|...
T Consensus 151 ---~gi~~l~~~i~~~ 163 (271)
T 3k53_A 151 ---EGVEELKRMIALM 163 (271)
T ss_dssp ---BTHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHH
Confidence 5666677666543
No 82
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.37 E-value=1.5e-12 Score=133.99 Aligned_cols=153 Identities=10% Similarity=0.029 Sum_probs=93.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEE-EEeCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEEe
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVT-VVSGKKRRLQFVECPND--ING-MIDCAKFADLALLLID 149 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVID 149 (1068)
.....|+|+|.+|||||||+++|++........ +.+... .+......+.|+||||. +.. ....+..||++|||+|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D 105 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 105 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEE-ETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccCC-cCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 346889999999999999999998653211111 112111 23345789999999993 444 4456789999999999
Q ss_pred CCCCCc--hhHHHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 150 ASHGFE--METFEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 150 as~g~e--~~t~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
++.+.. .....+..++.. .++| +|+|+||+|+.... ....+.+.+...+. .....++|.+||++| .
T Consensus 106 ~~~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~i~~~~~~~~~--~~~~~~~~~~SA~~g-----~ 176 (192)
T 2b6h_A 106 SNDRERVQESADELQKMLQEDELRDAV-LLVFANKQDMPNAM-PVSELTDKLGLQHL--RSRTWYVQATCATQG-----T 176 (192)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCC-CHHHHHHHTTGGGC--SSCCEEEEECBTTTT-----B
T ss_pred CCCHHHHHHHHHHHHHHhcccccCCCe-EEEEEECCCCCCCC-CHHHHHHHhCcccc--cCCceEEEECcCCCc-----C
Confidence 986532 222223333332 3666 89999999997531 12223222211110 113457899999865 5
Q ss_pred hhcchHHHHHHh
Q 046721 225 DIGNLAEFISVM 236 (1068)
Q Consensus 225 ei~nLlR~I~~~ 236 (1068)
++.++...|...
T Consensus 177 gi~~l~~~l~~~ 188 (192)
T 2b6h_A 177 GLYDGLDWLSHE 188 (192)
T ss_dssp THHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 667777666543
No 83
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.37 E-value=2e-12 Score=128.25 Aligned_cols=149 Identities=14% Similarity=0.134 Sum_probs=90.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccC-CCCceeccEE---EEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVRGPVT---VVS-GKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~~~It---i~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
+..|+|+|.+|+|||||+|+|++..... ...++...+. +.. +....+.|+||||. +.. +...+..+|++|||
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence 4689999999999999999999864221 1111111111 111 23468999999993 333 45667899999999
Q ss_pred EeCCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 148 IDASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 148 IDas~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
+|++.+..... ..++..+.. .+.| +++|+||+|+.......... ..+...+ +.++|++||+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~-~~~~~~~------~~~~~~~Sa~~~----- 149 (170)
T 1g16_A 83 YDITDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRVVTADQG-EALAKEL------GIPFIESSAKND----- 149 (170)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTCCSCHHHH-HHHHHHH------TCCEEECBTTTT-----
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCCcCccCHHHH-HHHHHHc------CCeEEEEECCCC-----
Confidence 99986432211 234444433 3566 89999999985321111112 2222222 458999999865
Q ss_pred hhhcchHHHHHHhh
Q 046721 224 KDIGNLAEFISVMK 237 (1068)
Q Consensus 224 ~ei~nLlR~I~~~k 237 (1068)
.++..+...|....
T Consensus 150 ~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 150 DNVNEIFFTLAKLI 163 (170)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 55666666665433
No 84
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.37 E-value=1.1e-12 Score=132.39 Aligned_cols=150 Identities=15% Similarity=0.177 Sum_probs=89.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc-cccCCCCceeccEE-EEe--CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGPVT-VVS--GKKRRLQFVECPND--ING-MIDCAKFADLALLLI 148 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~It-i~~--~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVI 148 (1068)
+..|+|+|.+|+|||||+++|++. .......++...+. ... +....+.|+||||. +.. ....+..+|++|+|+
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 85 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVY 85 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEE
Confidence 578999999999999999999965 33222233222222 222 23467899999993 333 234467899999999
Q ss_pred eCCCCCchhH-----HHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 149 DASHGFEMET-----FEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 149 Das~g~e~~t-----~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
|++....... .+++..+...++| +|+|+||+|+.............+...+ +.++|.+||+++
T Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~----- 153 (181)
T 3t5g_A 86 SVTSIKSFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLHMERVISYEEGKALAESW------NAAFLESSAKEN----- 153 (181)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHC----CC-EEEEEECTTCTTTCCSCHHHHHHHHHHT------TCEEEECCTTSH-----
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcceecHHHHHHHHHHh------CCcEEEEecCCC-----
Confidence 9985322111 1233333334777 8999999998642111111112222222 568999999854
Q ss_pred hhhcchHHHHHHhh
Q 046721 224 KDIGNLAEFISVMK 237 (1068)
Q Consensus 224 ~ei~nLlR~I~~~k 237 (1068)
..+..+...|....
T Consensus 154 ~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 154 QTAVDVFRRIILEA 167 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 66777776665443
No 85
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.36 E-value=1.9e-12 Score=128.62 Aligned_cols=150 Identities=15% Similarity=0.169 Sum_probs=89.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccC-CCCceeccEE---EEe-CCCeeEEEEeCCCC--hhHHH-HHHHhcCEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVRGPVT---VVS-GKKRRLQFVECPND--INGMI-DCAKFADLAL 145 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~~~It---i~~-~~k~rl~fIDtPGd--l~sml-d~akvADlVL 145 (1068)
..+..|+|+|.+|+|||||+|+|++..... ...+....+. +.. +....+.|+||||. +..+. ..+..+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 345789999999999999999999864221 1222111111 211 23557899999993 33322 2357899999
Q ss_pred EEEeCCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCc
Q 046721 146 LLIDASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGK 220 (1068)
Q Consensus 146 lVIDas~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~ 220 (1068)
||+|++.+..... ..++..+.. .++| +++|+||+|+..... ......+ +... .+.++|++||+++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~-~~~~------~~~~~~~~Sa~~~-- 153 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEIC-LCIVGNKIDLEKERHVSIQEAES-YAES------VGAKHYHTSAKQN-- 153 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSE-EEEEEECGGGGGGCCSCHHHHHH-HHHH------TTCEEEEEBTTTT--
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccccCHHHHHH-HHHH------cCCeEEEecCCCC--
Confidence 9999986432222 123333332 4666 899999999975211 1112222 2112 1568999999865
Q ss_pred CCchhhcchHHHHHHh
Q 046721 221 YTKKDIGNLAEFISVM 236 (1068)
Q Consensus 221 y~~~ei~nLlR~I~~~ 236 (1068)
..+..+...|...
T Consensus 154 ---~gi~~l~~~l~~~ 166 (170)
T 1z08_A 154 ---KGIEELFLDLCKR 166 (170)
T ss_dssp ---BSHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHH
Confidence 5566666666443
No 86
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.36 E-value=5.7e-12 Score=125.69 Aligned_cols=149 Identities=17% Similarity=0.187 Sum_probs=87.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccC---CCCceeccEEEEe-CCCeeEEEEeCCCCh----hHHHH-HHHhcCEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKL---KVPEVRGPVTVVS-GKKRRLQFVECPNDI----NGMID-CAKFADLAL 145 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~---~~~tt~~~Iti~~-~~k~rl~fIDtPGdl----~smld-~akvADlVL 145 (1068)
.+..|+|+|.+|||||||+|+|++..... ....+....++.. +....+.++||||.- ..+.. .+..+|++|
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i 82 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV 82 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence 45789999999999999999999874221 1111111112222 234588999999932 23333 347799999
Q ss_pred EEEeCCCCCchhH-HHHHHHHHhC----CCCcEEEEEeCCCcCCcHHH-HHHHHHHHHHHhcccccCCCeEEEEecccCC
Q 046721 146 LLIDASHGFEMET-FEFLNLMQNH----GLPNVMGVLTHLDKFTDKKK-LRKTKQHLKHRFGTELYHGAKLFKLSGLIQG 219 (1068)
Q Consensus 146 lVIDas~g~e~~t-~eiL~~L~~~----GlP~vIvVLNKiDlvk~~k~-l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~ 219 (1068)
+|+|++....-.. ..++..+... ++| +|+|+||+|+...... ..... .+...+ +.++|++||++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~~~~~v~~~~~~-~~~~~~------~~~~~~~Sa~~g- 153 (175)
T 2nzj_A 83 IVYSIADRGSFESASELRIQLRRTHQADHVP-IILVGNKADLARCREVSVEEGR-ACAVVF------DCKFIETSATLQ- 153 (175)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHCC----CC-EEEEEECTTCTTTCCSCHHHHH-HHHHHH------TSEEEECBTTTT-
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEEChhhccccccCHHHHH-HHHHHc------CCeEEEEecCCC-
Confidence 9999985432221 1334434433 677 8999999999752110 11111 111111 468999999965
Q ss_pred cCCchhhcchHHHHHHh
Q 046721 220 KYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 220 ~y~~~ei~nLlR~I~~~ 236 (1068)
.++..+...|...
T Consensus 154 ----~gi~~l~~~l~~~ 166 (175)
T 2nzj_A 154 ----HNVAELFEGVVRQ 166 (175)
T ss_dssp ----BSHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHH
Confidence 5566666665443
No 87
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.36 E-value=4e-12 Score=129.96 Aligned_cols=149 Identities=17% Similarity=0.125 Sum_probs=92.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCC-CCce---eccEEEE-eCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLK-VPEV---RGPVTVV-SGKKRRLQFVECPND--ING-MIDCAKFADLALL 146 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~-~~tt---~~~Iti~-~~~k~rl~fIDtPGd--l~s-mld~akvADlVLl 146 (1068)
.+..|+|+|.+|+|||||+|+|++...... ..+. .....+. ......+.|+||||. +.. ....+..+|++||
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~ 103 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALL 103 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 357899999999999999999998642211 1111 1111122 233578999999993 444 4556789999999
Q ss_pred EEeCCCCCchh-HHHHHHHHHhC---CCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 147 LIDASHGFEME-TFEFLNLMQNH---GLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 147 VIDas~g~e~~-t~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
|+|++.+.... ....+..+... ++| +|+|+||+|+..... ......... .. .+..+|.+||+++
T Consensus 104 v~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~-~~------~~~~~~~~Sa~~~--- 172 (193)
T 2oil_A 104 VFDLTKHQTYAVVERWLKELYDHAEATIV-VMLVGNKSDLSQAREVPTEEARMFA-EN------NGLLFLETSALDS--- 172 (193)
T ss_dssp EEETTCHHHHHTHHHHHHHHHTTSCTTCE-EEEEEECGGGGGGCCSCHHHHHHHH-HH------TTCEEEEECTTTC---
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECCCcccccccCHHHHHHHH-HH------cCCEEEEEeCCCC---
Confidence 99998643321 12344444433 555 899999999975211 111222211 11 2568999999865
Q ss_pred CchhhcchHHHHHHh
Q 046721 222 TKKDIGNLAEFISVM 236 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~~ 236 (1068)
.++..+...|...
T Consensus 173 --~gi~~l~~~l~~~ 185 (193)
T 2oil_A 173 --TNVELAFETVLKE 185 (193)
T ss_dssp --TTHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHH
Confidence 5566666555443
No 88
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.36 E-value=1.7e-12 Score=132.44 Aligned_cols=149 Identities=15% Similarity=0.126 Sum_probs=92.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccC-CCCce---eccEEEEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEV---RGPVTVVS-GKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt---~~~Iti~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
...|+|+|.+|+|||||+|+|++..... ...+. .....+.. .....+.|+||||. +.. ....+..||++|||
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 101 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLM 101 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEE
Confidence 4789999999999999999999874221 11111 11111222 33568999999993 333 34456889999999
Q ss_pred EeCCCCCchhH-HHHHHHHHhC---CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 148 IDASHGFEMET-FEFLNLMQNH---GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 148 IDas~g~e~~t-~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
+|++.+..... ..++..+... ++| +|+|+||+|+...........+.+...+ +.++|.+||+++
T Consensus 102 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~g----- 169 (189)
T 2gf9_A 102 YDIANQESFAAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDERVVPAEDGRRLADDL------GFEFFEASAKEN----- 169 (189)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCHHHHHHHHHHH------TCEEEECBTTTT-----
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccCCCHHHHHHHHHHc------CCeEEEEECCCC-----
Confidence 99976432221 2344555443 566 8999999999752111011112222222 458999999865
Q ss_pred hhhcchHHHHHHh
Q 046721 224 KDIGNLAEFISVM 236 (1068)
Q Consensus 224 ~ei~nLlR~I~~~ 236 (1068)
.++..+...|...
T Consensus 170 ~gi~~l~~~l~~~ 182 (189)
T 2gf9_A 170 INVKQVFERLVDV 182 (189)
T ss_dssp BSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5566666655443
No 89
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.36 E-value=3.7e-12 Score=131.35 Aligned_cols=151 Identities=19% Similarity=0.215 Sum_probs=90.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccC-CCCcee---ccEEEE-eCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVR---GPVTVV-SGKKRRLQFVECPND--ING-MIDCAKFADLAL 145 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~---~~Iti~-~~~k~rl~fIDtPGd--l~s-mld~akvADlVL 145 (1068)
..+..|+|+|.+|+|||||+++|++..... ...+.. ...++. .+....+.|+||||. +.. +...+..+|++|
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 346899999999999999999999864211 111111 111122 233567999999993 444 455678999999
Q ss_pred EEEeCCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCcHH-----H-HHHHHHHHHHHhcccccCCCeEEEEec
Q 046721 146 LLIDASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTDKK-----K-LRKTKQHLKHRFGTELYHGAKLFKLSG 215 (1068)
Q Consensus 146 lVIDas~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k-----~-l~~vkk~Lk~~~~~e~~~~~kVf~ISA 215 (1068)
||+|++.+..... ..++..+.. .++| +|+|+||+|+..... . .......+.... +.++|.+||
T Consensus 106 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~~SA 178 (199)
T 2p5s_A 106 LLYDVTCEKSFLNIREWVDMIEDAAHETVP-IMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY------GALFCETSA 178 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHC---CC-EEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH------TCEEEECCT
T ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccccccccccCHHHHHHHHHHc------CCeEEEeeC
Confidence 9999986533222 233444433 3677 899999999863110 0 011111121111 568999999
Q ss_pred ccCCcCCchhhcchHHHHHHh
Q 046721 216 LIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 216 l~g~~y~~~ei~nLlR~I~~~ 236 (1068)
++| .++.++...|...
T Consensus 179 ~~g-----~gv~el~~~l~~~ 194 (199)
T 2p5s_A 179 KDG-----SNIVEAVLHLARE 194 (199)
T ss_dssp TTC-----TTHHHHHHHHHHH
T ss_pred CCC-----CCHHHHHHHHHHH
Confidence 865 5566666666543
No 90
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.35 E-value=8.8e-13 Score=133.83 Aligned_cols=151 Identities=11% Similarity=0.110 Sum_probs=91.9
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEEeCC
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--ING-MIDCAKFADLALLLIDAS 151 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVIDas 151 (1068)
....|+|+|.+|+|||||+|+|++........+..-.+..+...+..+.|+||||. +.. ....+..+|++|||+|++
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~ 99 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST 99 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC
Confidence 45789999999999999999999863211111111111112224689999999994 333 344568899999999998
Q ss_pred CCCchh--HHHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhh
Q 046721 152 HGFEME--TFEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDI 226 (1068)
Q Consensus 152 ~g~e~~--t~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei 226 (1068)
...... ...+..++.. .++| +|+|+||+|+.... ....+.+.+.... ....+.++|.+||+++ .++
T Consensus 100 ~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~i~~~~~~~~--~~~~~~~~~~~Sa~~g-----~gi 170 (181)
T 2h17_A 100 DRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECM-TVAEISQFLKLTS--IKDHQWHIQACCALTG-----EGL 170 (181)
T ss_dssp CTTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCC-CHHHHHHHTTGGG--CCSSCEEEEECBTTTT-----BTH
T ss_pred CHHHHHHHHHHHHHHHhChhhCCCe-EEEEEECCCcccCC-CHHHHHHHhCccc--ccCCceEEEEccCCCC-----cCH
Confidence 753222 2233344432 5666 89999999997521 1122222221110 0113458999999865 556
Q ss_pred cchHHHHH
Q 046721 227 GNLAEFIS 234 (1068)
Q Consensus 227 ~nLlR~I~ 234 (1068)
.++...|.
T Consensus 171 ~~l~~~l~ 178 (181)
T 2h17_A 171 CQGLEWMM 178 (181)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665553
No 91
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.35 E-value=2.2e-12 Score=128.95 Aligned_cols=148 Identities=13% Similarity=0.175 Sum_probs=90.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCC-CCcee-ccEE--EEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLK-VPEVR-GPVT--VVS-GKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~-~~tt~-~~It--i~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
+..|+|+|.+|+|||||+|+|++...... ..++. .... +.. +....+.|+||||. +.. +...+..+|++|+|
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v 93 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVV 93 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37899999999999999999997632211 11111 1111 112 22458999999993 444 44567899999999
Q ss_pred EeCCCCCchh-HHHHHHHHHh---CCCCcEEEEEeCCCcCCcHHH-HHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 148 IDASHGFEME-TFEFLNLMQN---HGLPNVMGVLTHLDKFTDKKK-LRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 148 IDas~g~e~~-t~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~-l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
+|++.+.... ....+..+.. .++| +++|+||+|+...... ........... +.++|.+||+++
T Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~---- 161 (179)
T 2y8e_A 94 YDITNTNSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVSTEEGERKAKEL-------NVMFIETSAKAG---- 161 (179)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECGGGGGGCCSCHHHHHHHHHHH-------TCEEEEEBTTTT----
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccCcCCHHHHHHHHHHc-------CCeEEEEeCCCC----
Confidence 9998643211 1123333322 3666 8999999999742111 11222222211 468999999865
Q ss_pred chhhcchHHHHHHh
Q 046721 223 KKDIGNLAEFISVM 236 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~ 236 (1068)
..+..+...|...
T Consensus 162 -~~i~~l~~~l~~~ 174 (179)
T 2y8e_A 162 -YNVKQLFRRVAAA 174 (179)
T ss_dssp -BSHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHH
Confidence 5666676666543
No 92
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.35 E-value=1.5e-12 Score=130.35 Aligned_cols=151 Identities=14% Similarity=0.175 Sum_probs=90.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcccc-CCCCcee-cc-EEEEe--CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTK-LKVPEVR-GP-VTVVS--GKKRRLQFVECPND--ING-MIDCAKFADLAL 145 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~-~~~~tt~-~~-Iti~~--~~k~rl~fIDtPGd--l~s-mld~akvADlVL 145 (1068)
..++.|+|+|.+|+|||||+|+|++.... ....++. .. +..+. +....+.|+||||. +.. ....+..+|++|
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 34578999999999999999999986422 1111111 11 11122 22468999999993 222 344568899999
Q ss_pred EEEeCCCCCchhHH-HHHHHHHhC--CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 146 LLIDASHGFEMETF-EFLNLMQNH--GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 146 lVIDas~g~e~~t~-eiL~~L~~~--GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
||+|++.+...... ..+..+... ++| +|+|+||+|+.............+...+ +.++|.+||++|
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~---- 155 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNCDDVC-RILVGNKNDDPERKVVETEDAYKFAGQM------GIQLFETSAKEN---- 155 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHCTTSE-EEEEEECTTCGGGCCSCHHHHHHHHHHH------TCCEEECBTTTT----
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCCCchhcccCHHHHHHHHHHc------CCeEEEEECCCC----
Confidence 99999874332221 233433332 456 8999999998742111111111122221 468999999965
Q ss_pred chhhcchHHHHHHh
Q 046721 223 KKDIGNLAEFISVM 236 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~ 236 (1068)
.++..+...|...
T Consensus 156 -~gi~~l~~~l~~~ 168 (181)
T 3tw8_B 156 -VNVEEMFNCITEL 168 (181)
T ss_dssp -BSHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHH
Confidence 5566666555443
No 93
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.35 E-value=3.1e-12 Score=131.36 Aligned_cols=150 Identities=18% Similarity=0.211 Sum_probs=90.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCC-CCce--eccE-EEEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLK-VPEV--RGPV-TVVS-GKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~-~~tt--~~~I-ti~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
...|+|+|.+|+|||||+|+|++...... ..+. ...+ .+.. +....+.|+||||. +.. ....+..+|++|||
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV 105 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILV 105 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEE
Confidence 36799999999999999999998632111 1111 1111 1222 22468999999994 444 45567899999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 148 IDASHGFEMETF-EFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 148 IDas~g~e~~t~-eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
+|++.+...+.. .++..+.. .++| +|+|+||+|+.............+... ..+.++|.+||++|
T Consensus 106 ~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilV~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~~SA~~g----- 174 (192)
T 2il1_A 106 YDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDREITRQQGEKFAQQ-----ITGMRFCEASAKDN----- 174 (192)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSCHHHHHHHHHT-----STTCEEEECBTTTT-----
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccCHHHHHHHHHh-----cCCCeEEEEeCCCC-----
Confidence 999865432221 23344433 3566 899999999974211101111222111 23678999999865
Q ss_pred hhhcchHHHHHHh
Q 046721 224 KDIGNLAEFISVM 236 (1068)
Q Consensus 224 ~ei~nLlR~I~~~ 236 (1068)
.++.++...|...
T Consensus 175 ~gi~~l~~~l~~~ 187 (192)
T 2il1_A 175 FNVDEIFLKLVDD 187 (192)
T ss_dssp BSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5566666666443
No 94
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.35 E-value=2.7e-12 Score=128.63 Aligned_cols=145 Identities=19% Similarity=0.243 Sum_probs=88.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCCCeeEEEEeCCCC--hh------HHHH-HH--Hhc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGKKRRLQFVECPND--IN------GMID-CA--KFA 141 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd--l~------smld-~a--kvA 141 (1068)
+..|+|+|++|||||||+|+|++.. +...+.++..... .+......+.++||||. +. .+.. .+ ..+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 3689999999999999999999853 2222222222111 22234578999999993 21 2222 22 379
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 142 DLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 142 DlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
|++++|+|++. ++ ....++..+...++| +|+|+||+|+.... .+....+.+...+ +.++|++||++|
T Consensus 83 ~~~i~v~D~~~-~~-~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~-~~~~~~~~~~~~~------~~~~~~~SA~~~--- 149 (165)
T 2wji_A 83 DLVVNIVDATA-LE-RNLYLTLQLMEMGAN-LLLALNKMDLAKSL-GIEIDVDKLEKIL------GVKVVPLSAAKK--- 149 (165)
T ss_dssp SEEEEEEETTC-HH-HHHHHHHHHHHTTCC-EEEEEECHHHHHHT-TCCCCHHHHHHHH------TSCEEECBGGGT---
T ss_pred CEEEEEecCCc-hh-HhHHHHHHHHhcCCC-EEEEEEchHhcccc-ChhhHHHHHHHHh------CCCEEEEEcCCC---
Confidence 99999999975 22 223345555567888 89999999985311 0000112222222 468999999965
Q ss_pred CchhhcchHHHHHH
Q 046721 222 TKKDIGNLAEFISV 235 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~ 235 (1068)
.++..+...|..
T Consensus 150 --~~v~~l~~~l~~ 161 (165)
T 2wji_A 150 --MGIEELKKAISI 161 (165)
T ss_dssp --BSHHHHHHHHHH
T ss_pred --CCHHHHHHHHHH
Confidence 556666655543
No 95
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.35 E-value=1.2e-12 Score=153.66 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=94.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEEE-EeCCCeeEEEEeCCCC------hh----H-HHHHHHhc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVTV-VSGKKRRLQFVECPND------IN----G-MIDCAKFA 141 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~Iti-~~~~k~rl~fIDtPGd------l~----s-mld~akvA 141 (1068)
+.|+|||.+|||||||+|+|++.. +...+.+++..+.. .......++++||||- +. . +..++..|
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 103 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 103 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhC
Confidence 589999999999999999999974 23344444444332 2345779999999991 12 2 34456889
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 142 DLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 142 DlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
|+||||+|+..++.....+++..|...+.| +|+|+||+|+...... +.. ++. .....++++||.+|
T Consensus 104 d~il~VvD~~~~~~~~d~~l~~~l~~~~~p-vilV~NK~D~~~~~~~-------~~e-~~~--lg~~~~~~iSA~~g--- 169 (456)
T 4dcu_A 104 DVIIFMVNGREGVTAADEEVAKILYRTKKP-VVLAVNKLDNTEMRAN-------IYD-FYS--LGFGEPYPISGTHG--- 169 (456)
T ss_dssp SEEEEEEESSSCSCHHHHHHHHHHTTCCSC-EEEEEECC----------------CC-SGG--GSSSSEEECCTTTC---
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHcCCC-EEEEEECccchhhhhh-------HHH-HHH--cCCCceEEeecccc---
Confidence 999999999999999999999999888998 8999999998742110 100 111 12345789999865
Q ss_pred CchhhcchHHHHHH
Q 046721 222 TKKDIGNLAEFISV 235 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~ 235 (1068)
.++.+|...+..
T Consensus 170 --~gv~~L~~~i~~ 181 (456)
T 4dcu_A 170 --LGLGDLLDAVAE 181 (456)
T ss_dssp --TTHHHHHHHHHT
T ss_pred --cchHHHHHHHHh
Confidence 566677766644
No 96
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.35 E-value=1.7e-12 Score=135.43 Aligned_cols=152 Identities=15% Similarity=0.158 Sum_probs=92.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcccc----CCCCceeccEEEEeCC--CeeEEEEeCCCC--hhH-HHHHHHhcCEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTK----LKVPEVRGPVTVVSGK--KRRLQFVECPND--ING-MIDCAKFADLA 144 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~----~~~~tt~~~Iti~~~~--k~rl~fIDtPGd--l~s-mld~akvADlV 144 (1068)
..+..|+|+|.+|||||||+|+|++.... .+...+...+.+.... ...+.|+||||. +.. ....+..||++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 34688999999999999999999975321 1222222222222222 267999999993 222 33456789999
Q ss_pred EEEEeCCCCCchhHH-HHHHHHH---hCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCc
Q 046721 145 LLLIDASHGFEMETF-EFLNLMQ---NHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGK 220 (1068)
Q Consensus 145 LlVIDas~g~e~~t~-eiL~~L~---~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~ 220 (1068)
|||+|++.+...+.. ..+..+. ..++| +|+|+||+|+............. +.. ..+.++|.+||++|
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~----~~~--~~~~~~~~~Sa~~g-- 159 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAP-IVVCANKIDIKNRQKISKKLVME----VLK--GKNYEYFEISAKTA-- 159 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCSSSC-EEEEEECTTCC----CCHHHHHH----HTT--TCCCEEEEEBTTTT--
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccCHHHHHH----HHH--HcCCcEEEEecCCC--
Confidence 999999865433222 2333332 34677 89999999997532111111111 111 13578999999965
Q ss_pred CCchhhcchHHHHHHhh
Q 046721 221 YTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 221 y~~~ei~nLlR~I~~~k 237 (1068)
.++..+...|....
T Consensus 160 ---~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 160 ---HNFGLPFLHLARIF 173 (218)
T ss_dssp ---BTTTHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHH
Confidence 56667776665544
No 97
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.35 E-value=6.2e-12 Score=129.55 Aligned_cols=153 Identities=11% Similarity=0.082 Sum_probs=95.9
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCC---CCceeccEEE-E-eCCCeeEEEEeCCCC--hhHH----HHHHHhcCE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLK---VPEVRGPVTV-V-SGKKRRLQFVECPND--INGM----IDCAKFADL 143 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~---~~tt~~~Iti-~-~~~k~rl~fIDtPGd--l~sm----ld~akvADl 143 (1068)
....|+|+|.+|||||||++.|.+...... ...+...+.. + .+....+.|+||||. +..+ ...++.||+
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGA 98 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCE
Confidence 346899999999999999999998643221 1111222222 1 245679999999993 4443 477899999
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHh-----CCCCcEEEEEeCCCcCCcHHH---HHHHHHHHHHHhcccc--cCCCeEEEE
Q 046721 144 ALLLIDASHGFEMETFEFLNLMQN-----HGLPNVMGVLTHLDKFTDKKK---LRKTKQHLKHRFGTEL--YHGAKLFKL 213 (1068)
Q Consensus 144 VLlVIDas~g~e~~t~eiL~~L~~-----~GlP~vIvVLNKiDlvk~~k~---l~~vkk~Lk~~~~~e~--~~~~kVf~I 213 (1068)
+|||+|++..+......+..++.. .++| +|+|+||+|+..+... .+.+.......+.... ..+..+|.+
T Consensus 99 ~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~ 177 (196)
T 3llu_A 99 LIYVIDAQDDYMEALTRLHITVSKAYKVNPDMN-FEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLT 177 (196)
T ss_dssp EEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEE
T ss_pred EEEEEECCCchHHHHHHHHHHHHHHHhcCCCCc-EEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEE
Confidence 999999998643333333333332 3666 8999999999864221 1222222222222222 235689999
Q ss_pred ecccCCcCCchhhcchHHHHH
Q 046721 214 SGLIQGKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 214 SAl~g~~y~~~ei~nLlR~I~ 234 (1068)
||+ . ..+.++...|.
T Consensus 178 Sa~-----~-~~v~~~f~~l~ 192 (196)
T 3llu_A 178 SIY-----D-HSIFEAFSKVV 192 (196)
T ss_dssp CTT-----S-THHHHHHHHHH
T ss_pred Eec-----h-hhHHHHHHHHH
Confidence 997 4 56666665554
No 98
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.35 E-value=5.5e-12 Score=129.93 Aligned_cols=147 Identities=14% Similarity=0.126 Sum_probs=90.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccC-CCCce---eccEEEEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEV---RGPVTVVS-GKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt---~~~Iti~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
...|+|+|.+|+|||||+++|++..... ...+. ....++.. .....+.|+||||. +.. ....+..||++|||
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 87 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILM 87 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEE
Confidence 4789999999999999999999864221 11211 11111222 23568999999994 444 34456889999999
Q ss_pred EeCCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 148 IDASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 148 IDas~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
+|++.+..... ..++..+.. .+.| +|+|+||+|+.............+...+ +.++|.+||+++
T Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~----- 155 (203)
T 1zbd_A 88 YDITNEESFNAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDERVVSSERGRQLADHL------GFEFFEASAKDN----- 155 (203)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSCCSCHHHHHHHHHHH------TCEEEECBTTTT-----
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCcccccCHHHHHHHHHHC------CCeEEEEECCCC-----
Confidence 99986432221 234444443 3566 8999999999753211111112222222 458999999965
Q ss_pred hhhcchHHHHH
Q 046721 224 KDIGNLAEFIS 234 (1068)
Q Consensus 224 ~ei~nLlR~I~ 234 (1068)
.++..+...|.
T Consensus 156 ~gi~~l~~~l~ 166 (203)
T 1zbd_A 156 INVKQTFERLV 166 (203)
T ss_dssp BSSHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 44555554443
No 99
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.35 E-value=1.9e-12 Score=130.20 Aligned_cols=151 Identities=21% Similarity=0.198 Sum_probs=88.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE--E-EeCCCeeEEEEeCCC--ChhH-HHHHHHhcCEEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT--V-VSGKKRRLQFVECPN--DING-MIDCAKFADLALLL 147 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It--i-~~~~k~rl~fIDtPG--dl~s-mld~akvADlVLlV 147 (1068)
.+..|+|+|.+|+|||||+++|++.. ......++...+. + ..+....+.|+|||| .+.. ....+..+|++|||
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 86 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 86 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEE
Confidence 46789999999999999999999763 2222222211111 1 122345677999999 3444 33456889999999
Q ss_pred EeCCCCCchhHH--HHHHHHHh--CCCCcEEEEEeCCCcCCcHHH----------HHHHHHHHHHHhcccccCCCeEEEE
Q 046721 148 IDASHGFEMETF--EFLNLMQN--HGLPNVMGVLTHLDKFTDKKK----------LRKTKQHLKHRFGTELYHGAKLFKL 213 (1068)
Q Consensus 148 IDas~g~e~~t~--eiL~~L~~--~GlP~vIvVLNKiDlvk~~k~----------l~~vkk~Lk~~~~~e~~~~~kVf~I 213 (1068)
+|++........ .++..+.. .++| +|+|+||+|+...... .......+...+ ...++|.+
T Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~~ 160 (182)
T 3bwd_D 87 FSLISKASYENVSKKWIPELKHYAPGVP-IVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLI-----GAPAYIEC 160 (182)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHH-----TCSEEEEC
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHc-----CCCEEEEE
Confidence 999864332222 24444544 2677 8999999999764321 011112222222 22489999
Q ss_pred ecccCCcCCchhhcchHHHHHHh
Q 046721 214 SGLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 214 SAl~g~~y~~~ei~nLlR~I~~~ 236 (1068)
||++| .++..+...|...
T Consensus 161 Sa~~~-----~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 161 SSKSQ-----ENVKGVFDAAIRV 178 (182)
T ss_dssp CTTTC-----TTHHHHHHHHHHH
T ss_pred ECCCC-----CCHHHHHHHHHHH
Confidence 99965 5666777666544
No 100
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.35 E-value=3.9e-12 Score=129.28 Aligned_cols=147 Identities=12% Similarity=0.108 Sum_probs=92.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCCCC----------ceeccEEEE-------eCCCeeEEEEeCCC--ChhHHH
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVP----------EVRGPVTVV-------SGKKRRLQFVECPN--DINGMI 135 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~----------tt~~~Iti~-------~~~k~rl~fIDtPG--dl~sml 135 (1068)
....|+|+|.+|||||||++.|.+........ .+.+ ++.. .+....+.|+|||| .+..+.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 91 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLF-FDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASR 91 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEE-EEECCSSCCCSSSCEEEEEEEECCSCCSCSHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccee-eeecccccccccCCceEEEEEeCCChHHHHHHH
Confidence 35789999999999999999998875433111 1111 1111 12345799999999 455543
Q ss_pred -HHHHhcCEEEEEEeCCCCCchhHH----HHHHHHHh-----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccccc
Q 046721 136 -DCAKFADLALLLIDASHGFEMETF----EFLNLMQN-----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELY 205 (1068)
Q Consensus 136 -d~akvADlVLlVIDas~g~e~~t~----eiL~~L~~-----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~ 205 (1068)
..+..||++|||+|++.+...+.. .+...+.. .++| +|+|+||+|+... .......+.+. .
T Consensus 92 ~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~p-iilv~NK~Dl~~~-~~~~~~~~~~~-----~-- 162 (198)
T 3t1o_A 92 KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVP-IVIQVNKRDLPDA-LPVEMVRAVVD-----P-- 162 (198)
T ss_dssp HHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSC-EEEEEECTTSTTC-CCHHHHHHHHC-----T--
T ss_pred HHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCC-EEEEEEchhcccc-cCHHHHHHHHH-----h--
Confidence 467899999999999865433333 23333333 4667 8999999999753 11122222211 1
Q ss_pred CCC-eEEEEecccCCcCCchhhcchHHHHHHh
Q 046721 206 HGA-KLFKLSGLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 206 ~~~-kVf~ISAl~g~~y~~~ei~nLlR~I~~~ 236 (1068)
.+. ++|.+||++| .++..+...|...
T Consensus 163 ~~~~~~~~~Sa~~~-----~gv~~l~~~l~~~ 189 (198)
T 3t1o_A 163 EGKFPVLEAVATEG-----KGVFETLKEVSRL 189 (198)
T ss_dssp TCCSCEEECBGGGT-----BTHHHHHHHHHHH
T ss_pred cCCceEEEEecCCC-----cCHHHHHHHHHHH
Confidence 144 8999999965 5566666555443
No 101
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.35 E-value=6.6e-13 Score=135.30 Aligned_cols=155 Identities=11% Similarity=0.050 Sum_probs=95.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEEeC
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--ING-MIDCAKFADLALLLIDA 150 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVIDa 150 (1068)
..+..|+|+|.+|+|||||+|+|++........|....+..+......+.++||||. +.. ....++.+|++|+|+|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 99 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDS 99 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeC
Confidence 357899999999999999999997653211112211112223335789999999993 333 22345789999999999
Q ss_pred CCCC--chhHHHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchh
Q 046721 151 SHGF--EMETFEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKD 225 (1068)
Q Consensus 151 s~g~--e~~t~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~e 225 (1068)
+.+- ......+..++.. .+.| +|+|+||+|+.... ....+...+.... ....+.++|++||+++ .+
T Consensus 100 ~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~-----~g 170 (189)
T 2x77_A 100 TDRDRMGVAKHELYALLDEDELRKSL-LLIFANKQDLPDAA-SEAEIAEQLGVSS--IMNRTWTIVKSSSKTG-----DG 170 (189)
T ss_dssp TCCTTHHHHHHHHHHHHTCSTTTTCE-EEEEEECTTSTTCC-CHHHHHHHTTGGG--CCSSCEEEEECCTTTC-----TT
T ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCe-EEEEEECCCCcCCC-CHHHHHHHhChhh--ccCCceEEEEccCCCc-----cC
Confidence 8653 3222334444433 3666 89999999997531 1222222221111 0112457999999865 56
Q ss_pred hcchHHHHHHhh
Q 046721 226 IGNLAEFISVMK 237 (1068)
Q Consensus 226 i~nLlR~I~~~k 237 (1068)
+..+...|....
T Consensus 171 i~~l~~~l~~~i 182 (189)
T 2x77_A 171 LVEGMDWLVERL 182 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666766665443
No 102
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.35 E-value=2.6e-12 Score=151.90 Aligned_cols=144 Identities=19% Similarity=0.251 Sum_probs=103.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCCh------------hHHHHHHH
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPNDI------------NGMIDCAK 139 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGdl------------~smld~ak 139 (1068)
+..|+|||.||||||||+|+|++.. +...+.+|+..+. .+...+..++|+||||-. ..++..+.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 322 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence 3689999999999999999999873 4555666655443 233356789999999933 23677889
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCC
Q 046721 140 FADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQG 219 (1068)
Q Consensus 140 vADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~ 219 (1068)
.||++|+|+|++.+...+..+++..+ .+.| +|+|+||+|+.... .... +...+ ....++|++||+++
T Consensus 323 ~aD~vl~VvD~s~~~s~~~~~il~~l--~~~p-iivV~NK~DL~~~~-~~~~----~~~~~----~~~~~~i~iSAktg- 389 (482)
T 1xzp_A 323 KADIVLFVLDASSPLDEEDRKILERI--KNKR-YLVVINKVDVVEKI-NEEE----IKNKL----GTDRHMVKISALKG- 389 (482)
T ss_dssp HCSEEEEEEETTSCCCHHHHHHHHHH--TTSS-EEEEEEECSSCCCC-CHHH----HHHHH----TCSTTEEEEEGGGT-
T ss_pred cccEEEEEecCCCCCCHHHHHHHHHh--cCCC-EEEEEECccccccc-CHHH----HHHHh----cCCCcEEEEECCCC-
Confidence 99999999999988776666777665 4677 89999999997521 1112 22222 12367999999965
Q ss_pred cCCchhhcchHHHHHHh
Q 046721 220 KYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 220 ~y~~~ei~nLlR~I~~~ 236 (1068)
.++..|...|...
T Consensus 390 ----~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 390 ----EGLEKLEESIYRE 402 (482)
T ss_dssp ----CCHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHH
Confidence 5667777666543
No 103
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=4.8e-12 Score=128.71 Aligned_cols=151 Identities=15% Similarity=0.124 Sum_probs=94.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccC-CCCce---eccEEEE-eCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEV---RGPVTVV-SGKKRRLQFVECPND--ING-MIDCAKFADLALL 146 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt---~~~Iti~-~~~k~rl~fIDtPGd--l~s-mld~akvADlVLl 146 (1068)
++..|+|+|.+|+|||||+++|++..... ...+. ....++. ......+.|+||||. +.. ....+..+|++||
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 35789999999999999999999864221 11111 1111122 223578999999994 333 5566789999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHh----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 147 LIDASHGFEMET-FEFLNLMQN----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 147 VIDas~g~e~~t-~eiL~~L~~----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
|+|++.+..... ...+..+.. .++| +|+|+||+|+...........+..+. .+.++|.+||+++
T Consensus 94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~--- 162 (195)
T 1x3s_A 94 VYDVTRRDTFVKLDNWLNELETYCTRNDIV-NMLVGNKIDKENREVDRNEGLKFARK-------HSMLFIEASAKTC--- 162 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCE-EEEEEECTTSSSCCSCHHHHHHHHHH-------TTCEEEECCTTTC---
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCcCCCc-EEEEEECCcCcccccCHHHHHHHHHH-------cCCEEEEecCCCC---
Confidence 999986432221 233444443 2455 89999999995421111222222211 1568999999865
Q ss_pred CchhhcchHHHHHHhhc
Q 046721 222 TKKDIGNLAEFISVMKF 238 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~~k~ 238 (1068)
..+..+...|.....
T Consensus 163 --~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 163 --DGVQCAFEELVEKII 177 (195)
T ss_dssp --TTHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHH
Confidence 566667766655443
No 104
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.34 E-value=2.1e-12 Score=141.88 Aligned_cols=144 Identities=17% Similarity=0.226 Sum_probs=93.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCCCeeEEEEeCCC--Chh------HHHH-HHH--hc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGKKRRLQFVECPN--DIN------GMID-CAK--FA 141 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~k~rl~fIDtPG--dl~------smld-~ak--vA 141 (1068)
+..|+++|.||||||||+|+|++.. ++..+.++..... .+.. ...+.|+|||| .+. .+.. .+. .+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 4689999999999999999999863 3333333333222 2223 66899999999 232 2222 233 59
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 142 DLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 142 DlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
|++|+|+|++.. + ....++..+...|+| +|+|+||+|+.... .+....+.+...+ +.+++++||++|
T Consensus 82 d~vi~V~D~t~~-e-~~~~~~~~l~~~~~p-~ilv~NK~Dl~~~~-~~~~~~~~l~~~l------g~~vi~~SA~~g--- 148 (272)
T 3b1v_A 82 DSILNVVDATNL-E-RNLYLTTQLIETGIP-VTIALNMIDVLDGQ-GKKINVDKLSYHL------GVPVVATSALKQ--- 148 (272)
T ss_dssp SEEEEEEEGGGH-H-HHHHHHHHHHHTCSC-EEEEEECHHHHHHT-TCCCCHHHHHHHH------TSCEEECBTTTT---
T ss_pred CEEEEEecCCch-H-hHHHHHHHHHhcCCC-EEEEEEChhhCCcC-CcHHHHHHHHHHc------CCCEEEEEccCC---
Confidence 999999999762 1 223444555668999 89999999986321 1111122333333 568999999965
Q ss_pred CchhhcchHHHHHH
Q 046721 222 TKKDIGNLAEFISV 235 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~ 235 (1068)
.++..+...|..
T Consensus 149 --~gi~el~~~i~~ 160 (272)
T 3b1v_A 149 --TGVDQVVKKAAH 160 (272)
T ss_dssp --BSHHHHHHHHHH
T ss_pred --CCHHHHHHHHHH
Confidence 667777766644
No 105
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.34 E-value=1.6e-12 Score=134.61 Aligned_cols=153 Identities=12% Similarity=0.093 Sum_probs=89.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEEeCC
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--INGM-IDCAKFADLALLLIDAS 151 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVIDas 151 (1068)
.+..|+|+|++|||||||+++|++........|.......+...+..+.++||||. +..+ ...+..||++|||+|++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~ 103 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCA 103 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECC
Confidence 45789999999999999999998753222111111111122223589999999993 3333 24568899999999998
Q ss_pred CCCc--hhHHHHHHHHH---hCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHh----------cccccCCCeEEEEecc
Q 046721 152 HGFE--METFEFLNLMQ---NHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRF----------GTELYHGAKLFKLSGL 216 (1068)
Q Consensus 152 ~g~e--~~t~eiL~~L~---~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~----------~~e~~~~~kVf~ISAl 216 (1068)
..-. .....+..++. ..++| +|+|+||+|+... .....+.+.+.... ........++|.+||+
T Consensus 104 ~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 181 (198)
T 1f6b_A 104 DHERLLESKEELDSLMTDETIANVP-ILILGNKIDRPEA-ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL 181 (198)
T ss_dssp CGGGHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTSTTC-CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTT
T ss_pred CHHHHHHHHHHHHHHHhCcccCCCc-EEEEEECCCcccc-CCHHHHHHHhCcccccccccccccccccCceEEEEEEECC
Confidence 6532 22223333332 24777 8999999999741 11122222221110 0001235689999999
Q ss_pred cCCcCCchhhcchHHHHH
Q 046721 217 IQGKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 217 ~g~~y~~~ei~nLlR~I~ 234 (1068)
+| .++.++...|.
T Consensus 182 ~g-----~gv~~l~~~l~ 194 (198)
T 1f6b_A 182 KR-----QGYGEGFRWMA 194 (198)
T ss_dssp TT-----BSHHHHHHHHH
T ss_pred CC-----CCHHHHHHHHH
Confidence 65 56666666554
No 106
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.34 E-value=3.6e-12 Score=129.83 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=94.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEE--EEeCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEEe
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVT--VVSGKKRRLQFVECPND--ING-MIDCAKFADLALLLID 149 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~It--i~~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVID 149 (1068)
.+..|+|+|.+|||||||+++|++........ +.+ ++ .+......+.++||||. +.. ....+..||++|||+|
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~-t~g-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d 92 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQG-FNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVID 92 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEE-ETT-EEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccC-cCC-eEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 46789999999999999999999874221111 112 21 12224678999999994 444 3456789999999999
Q ss_pred CCCCCchh--HHHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCch
Q 046721 150 ASHGFEME--TFEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKK 224 (1068)
Q Consensus 150 as~g~e~~--t~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ 224 (1068)
++...... ...+..++.. .++| +|+|+||+|+.... ....+.+.+. +........++|.+||++| .
T Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~g-----~ 163 (181)
T 1fzq_A 93 SADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDLLTAA-PASEIAEGLN--LHTIRDRVWQIQSCSALTG-----E 163 (181)
T ss_dssp TTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTCC-CHHHHHHHTT--GGGCCSSCEEEEECCTTTC-----T
T ss_pred CcCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCcccCC-CHHHHHHHhC--chhccCCceEEEEccCCCC-----C
Confidence 98643222 1223333332 4677 89999999997532 1222222211 0000112457899999965 6
Q ss_pred hhcchHHHHHHh
Q 046721 225 DIGNLAEFISVM 236 (1068)
Q Consensus 225 ei~nLlR~I~~~ 236 (1068)
++..+...|...
T Consensus 164 gi~~l~~~l~~~ 175 (181)
T 1fzq_A 164 GVQDGMNWVCKN 175 (181)
T ss_dssp THHHHHHHHHHT
T ss_pred CHHHHHHHHHHH
Confidence 677777666543
No 107
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.34 E-value=4.6e-12 Score=131.14 Aligned_cols=149 Identities=14% Similarity=0.144 Sum_probs=90.9
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccC-CCCceeccEE---EEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVRGPVT---VVS-GKKRRLQFVECPND--ING-MIDCAKFADLALL 146 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~~~It---i~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLl 146 (1068)
....|+|+|.+|+|||||+++|++..... ...++...+. +.. +....+.|+||||. +.. ....+..+|++||
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 98 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIIL 98 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 45789999999999999999999764221 1111111111 222 22468999999993 333 4566789999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 147 LIDASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 147 VIDas~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
|+|++.+..... ..++..+.. .++| +|+|+||+|+.......... ..+...+ +.++|++||+++
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~-~~~~~~~------~~~~~~~Sa~~~---- 166 (213)
T 3cph_A 99 VYDVTDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRVVTADQG-EALAKEL------GIPFIESSAKND---- 166 (213)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHTTTCSE-EEEEEECTTCSSCCSCHHHH-HHHHHHH------TCCEEECBTTTT----
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccCHHHH-HHHHHHc------CCEEEEEeCCCC----
Confidence 999986432211 233443333 2566 89999999995321111111 2222222 457999999865
Q ss_pred chhhcchHHHHHHh
Q 046721 223 KKDIGNLAEFISVM 236 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~ 236 (1068)
.++..+...|...
T Consensus 167 -~gi~~l~~~l~~~ 179 (213)
T 3cph_A 167 -DNVNEIFFTLAKL 179 (213)
T ss_dssp -BSSHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHH
Confidence 5566666555443
No 108
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.34 E-value=9.3e-13 Score=132.89 Aligned_cols=154 Identities=12% Similarity=0.070 Sum_probs=92.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEEeC
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--ING-MIDCAKFADLALLLIDA 150 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVIDa 150 (1068)
..+..|+|+|++|||||||+++|++........+..-.+..+.....++.++||||. +.. ....+..+|++|+|+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDS 95 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 346899999999999999999999653211111111111122234689999999993 333 34456889999999999
Q ss_pred CCCCchhH--HHHHHHHH---hCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchh
Q 046721 151 SHGFEMET--FEFLNLMQ---NHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKD 225 (1068)
Q Consensus 151 s~g~e~~t--~eiL~~L~---~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~e 225 (1068)
+.+..... ..+..++. ..+.| +|+|+||+|+.... ....+.+.+... .....+.+++.+||+++ .+
T Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~~~~i~~~~~~~--~~~~~~~~~~~~Sa~~~-----~g 166 (183)
T 1moz_A 96 TDKDRMSTASKELHLMLQEEELQDAA-LLVFANKQDQPGAL-SASEVSKELNLV--ELKDRSWSIVASSAIKG-----EG 166 (183)
T ss_dssp TCTTTHHHHHHHHHHHTTSSTTSSCE-EEEEEECTTSTTCC-CHHHHHHHTTTT--TCCSSCEEEEEEBGGGT-----BT
T ss_pred CCHHHHHHHHHHHHHHHcChhhCCCe-EEEEEECCCCCCCC-CHHHHHHHhCcc--cccCCceEEEEccCCCC-----cC
Confidence 86533221 22333333 24566 89999999997531 122222221100 00113457999999965 56
Q ss_pred hcchHHHHHHh
Q 046721 226 IGNLAEFISVM 236 (1068)
Q Consensus 226 i~nLlR~I~~~ 236 (1068)
+.++...|...
T Consensus 167 i~~l~~~l~~~ 177 (183)
T 1moz_A 167 ITEGLDWLIDV 177 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 109
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.34 E-value=5.4e-12 Score=128.45 Aligned_cols=149 Identities=16% Similarity=0.189 Sum_probs=88.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccc-cCCCCceeccEE--EEe-CCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYT-KLKVPEVRGPVT--VVS-GKKRRLQFVECPND--INGM-IDCAKFADLALLL 147 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~-~~~~~tt~~~It--i~~-~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlV 147 (1068)
.+..|+|+|.+|||||||+++|++... .....++...+. +.. +....+.|+||||. +..+ ...+..+|++|+|
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 99 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEE
Confidence 347899999999999999999998632 222222222221 222 23456999999993 3443 3456889999999
Q ss_pred EeCCCCCchhH-HHHHHHHHh----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 148 IDASHGFEMET-FEFLNLMQN----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 148 IDas~g~e~~t-~eiL~~L~~----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
+|++....... ..++..+.. .++| +++|+||+|+...........+.. ..+ +.++|.+||+++
T Consensus 100 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~-~~~------~~~~~~~Sa~~~---- 167 (190)
T 3con_A 100 FAINNSKSFADINLYREQIKRVKDSDDVP-MVLVGNKCDLPTRTVDTKQAHELA-KSY------GIPFIETSAKTR---- 167 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCCSCHHHHHHHH-HHH------TCCEEECCTTTC----
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCcCCcccCCHHHHHHHH-HHc------CCeEEEEeCCCC----
Confidence 99986432222 122333322 4677 899999999875211112222222 222 457999999865
Q ss_pred chhhcchHHHHHHh
Q 046721 223 KKDIGNLAEFISVM 236 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~ 236 (1068)
..+..+...|...
T Consensus 168 -~gi~~l~~~l~~~ 180 (190)
T 3con_A 168 -QGVEDAFYTLVRE 180 (190)
T ss_dssp -TTHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHH
Confidence 5566666555443
No 110
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.34 E-value=6.3e-12 Score=125.88 Aligned_cols=150 Identities=12% Similarity=0.127 Sum_probs=90.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCCCCceec-cE---EEEe-CCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRG-PV---TVVS-GKKRRLQFVECPND--INGM-IDCAKFADLALL 146 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~-~I---ti~~-~~k~rl~fIDtPGd--l~sm-ld~akvADlVLl 146 (1068)
.+..|+|+|.+|+|||||+|+|++.........+.+ .+ .+.. +....+.|+||||. +..+ ...+..+|++|+
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 85 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 85 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEE
Confidence 357899999999999999999998642211111111 11 1111 22458999999994 3343 345688999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHh-------CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 147 LIDASHGFEMET-FEFLNLMQN-------HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 147 VIDas~g~e~~t-~eiL~~L~~-------~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
|+|++.+..... ..++..+.. .++| +++|+||+|+...........+..+. ....++|.+||++|
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~ 158 (177)
T 1wms_A 86 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDISERQVSTEEAQAWCRD------NGDYPYFETSAKDA 158 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTCSSCSSCHHHHHHHHHH------TTCCCEEECCTTTC
T ss_pred EEECcCHHHHHHHHHHHHHHHHHccccccCCCc-EEEEEECCcccccccCHHHHHHHHHh------cCCceEEEEeCCCC
Confidence 999986532221 122232221 4667 89999999997321112222222211 23568999999865
Q ss_pred CcCCchhhcchHHHHHHh
Q 046721 219 GKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 219 ~~y~~~ei~nLlR~I~~~ 236 (1068)
.++..+...|...
T Consensus 159 -----~gi~~l~~~l~~~ 171 (177)
T 1wms_A 159 -----TNVAAAFEEAVRR 171 (177)
T ss_dssp -----TTHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHH
Confidence 5666666666544
No 111
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=9.5e-12 Score=127.83 Aligned_cols=149 Identities=11% Similarity=0.147 Sum_probs=91.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcccc-CCCCceeccEE--EE-eCCCeeEEEEeCCCChh-H-HHHHHHhcCEEEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTK-LKVPEVRGPVT--VV-SGKKRRLQFVECPNDIN-G-MIDCAKFADLALLLI 148 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~-~~~~tt~~~It--i~-~~~k~rl~fIDtPGdl~-s-mld~akvADlVLlVI 148 (1068)
+...|+|+|.+|+|||||+++|++.... ....+....+. +. .+....+.|+||||... . ....+..+|++|||+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~d~iilv~ 106 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQREGHMRWGEGFVLVY 106 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCHHHHHHHHHCSEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCcccchhhhhccCCEEEEEE
Confidence 4678999999999999999999986321 11222111111 22 23356799999999432 3 455678999999999
Q ss_pred eCCCCCchhH-HHHHHHH----HhCCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 149 DASHGFEMET-FEFLNLM----QNHGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 149 Das~g~e~~t-~eiL~~L----~~~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
|++....-.. ...+..+ ...++| +|+|+||+|+..... ....... +...+ +.++|.+||+++
T Consensus 107 D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~~~~~~~-~~~~~------~~~~~~~Sa~~g---- 174 (196)
T 2atv_A 107 DITDRGSFEEVLPLKNILDEIKKPKNVT-LILVGNKADLDHSRQVSTEEGEK-LATEL------ACAFYECSACTG---- 174 (196)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGGGCCSCHHHHHH-HHHHH------TSEEEECCTTTC----
T ss_pred ECcCHHHHHHHHHHHHHHHHhhCCCCCc-EEEEEECcccccccccCHHHHHH-HHHHh------CCeEEEECCCcC----
Confidence 9985322111 1222222 235777 899999999975211 1112222 21121 568999999865
Q ss_pred ch-hhcchHHHHHHh
Q 046721 223 KK-DIGNLAEFISVM 236 (1068)
Q Consensus 223 ~~-ei~nLlR~I~~~ 236 (1068)
. ++..+...|...
T Consensus 175 -~~gi~~l~~~l~~~ 188 (196)
T 2atv_A 175 -EGNITEIFYELCRE 188 (196)
T ss_dssp -TTCHHHHHHHHHHH
T ss_pred -CcCHHHHHHHHHHH
Confidence 4 566666555443
No 112
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.34 E-value=4.4e-12 Score=129.38 Aligned_cols=137 Identities=13% Similarity=0.151 Sum_probs=83.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccC-CCCceeccE---EEEe-CCCeeEEEEeCCCC--hh-H-HHHHHHhcCEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVRGPV---TVVS-GKKRRLQFVECPND--IN-G-MIDCAKFADLAL 145 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~~~I---ti~~-~~k~rl~fIDtPGd--l~-s-mld~akvADlVL 145 (1068)
.+..|+|+|.+|+|||||+|+|++..... ...+....+ .+.. +....+.|+||||. +. . ....++.||++|
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ii 98 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 98 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEE
Confidence 34789999999999999999999763221 111111111 1222 22468999999994 43 3 445578999999
Q ss_pred EEEeCCCCCchhH-HHHHHHHH----hCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 146 LLIDASHGFEMET-FEFLNLMQ----NHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 146 lVIDas~g~e~~t-~eiL~~L~----~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
||+|++....-.. ...+..+. ..++| +|+|+||+|+...........+.+... .+.++|.+||+++
T Consensus 99 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~~------~~~~~~~~Sa~~~ 169 (189)
T 1z06_A 99 FVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKCDLRSAIQVPTDLAQKFADT------HSMPLFETSAKNP 169 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCGGGCCSCHHHHHHHHHH------TTCCEEECCSSSG
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceeCHHHHHHHHHH------cCCEEEEEeCCcC
Confidence 9999986422111 12222222 34677 899999999964211111112222222 1468999999854
No 113
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.34 E-value=4.7e-12 Score=129.57 Aligned_cols=150 Identities=14% Similarity=0.099 Sum_probs=91.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCC-CCceeccE---EEEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLK-VPEVRGPV---TVVS-GKKRRLQFVECPND--ING-MIDCAKFADLAL 145 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~-~~tt~~~I---ti~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVL 145 (1068)
.....|+|+|.+|+|||||+++|++...... ..+....+ .+.. +....+.|+||||. +.. ....++.+|++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 4457899999999999999999998642211 11111111 1222 23468999999993 333 456678999999
Q ss_pred EEEeCCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCcHHH-HHHHHHHHHHHhcccccCCCeEEEEecccCCc
Q 046721 146 LLIDASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTDKKK-LRKTKQHLKHRFGTELYHGAKLFKLSGLIQGK 220 (1068)
Q Consensus 146 lVIDas~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~-l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~ 220 (1068)
||+|++.....+. ...+..+.. .++| +|+|+||+|+...... .....+ +.... +.++|.+||+++
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~-~~~~~------~~~~~~~Sa~~~-- 168 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKSDLESRRDVKREEGEA-FAREH------GLIFMETSAKTA-- 168 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCHHHHHH-HHHHH------TCEEEEECTTTC--
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCCccccCHHHHHH-HHHHc------CCEEEEEeCCCC--
Confidence 9999986432221 234444443 3566 8999999999642110 112222 21111 468999999865
Q ss_pred CCchhhcchHHHHHHh
Q 046721 221 YTKKDIGNLAEFISVM 236 (1068)
Q Consensus 221 y~~~ei~nLlR~I~~~ 236 (1068)
.++.++...|...
T Consensus 169 ---~gi~~l~~~l~~~ 181 (191)
T 2a5j_A 169 ---CNVEEAFINTAKE 181 (191)
T ss_dssp ---TTHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHH
Confidence 5566666555443
No 114
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.34 E-value=3.7e-12 Score=128.36 Aligned_cols=155 Identities=20% Similarity=0.228 Sum_probs=95.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE--EE-eCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT--VV-SGKKRRLQFVECPND--INGM-IDCAKFADLALLLI 148 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It--i~-~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVI 148 (1068)
...|+|+|.+|+|||||+++|++.. ......++...+. +. .+....+.|+||||. +..+ ...+..+|++|||+
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 84 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICF 84 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEE
Confidence 4689999999999999999999753 2222222222111 22 233567889999994 3332 23467899999999
Q ss_pred eCCCCCchhHH--HHHHHHHhC--CCCcEEEEEeCCCcCCcHHHHHHHH---------HHHHHHhcccccCCCeEEEEec
Q 046721 149 DASHGFEMETF--EFLNLMQNH--GLPNVMGVLTHLDKFTDKKKLRKTK---------QHLKHRFGTELYHGAKLFKLSG 215 (1068)
Q Consensus 149 Das~g~e~~t~--eiL~~L~~~--GlP~vIvVLNKiDlvk~~k~l~~vk---------k~Lk~~~~~e~~~~~kVf~ISA 215 (1068)
|++.+...... .++..+... ++| +|+|+||+|+........... ..... +... ....++|++||
T Consensus 85 d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~-~~~~~~~~~Sa 161 (186)
T 1mh1_A 85 SLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA-MAKE-IGAVKYLECSA 161 (186)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHSTTSC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH-HHHH-TTCSEEEECCT
T ss_pred ECCChhhHHHHHHHHHHHHHHhCCCCC-EEEEeEcccccccchhhhhhcccccccCCHHHHHH-HHHh-cCCcEEEEecC
Confidence 99865332222 345555443 777 899999999976432111110 00111 1111 12248999999
Q ss_pred ccCCcCCchhhcchHHHHHHhhc
Q 046721 216 LIQGKYTKKDIGNLAEFISVMKF 238 (1068)
Q Consensus 216 l~g~~y~~~ei~nLlR~I~~~k~ 238 (1068)
++| .++..+...|.....
T Consensus 162 ~~g-----~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 162 LTQ-----RGLKTVFDEAIRAVL 179 (186)
T ss_dssp TTC-----TTHHHHHHHHHHHHS
T ss_pred CCc-----cCHHHHHHHHHHHHh
Confidence 965 667777777655544
No 115
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.33 E-value=3.1e-12 Score=130.94 Aligned_cols=150 Identities=15% Similarity=0.117 Sum_probs=93.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCCCCceec----cEEE-EeCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRG----PVTV-VSGKKRRLQFVECPND--ING-MIDCAKFADLALL 146 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~----~Iti-~~~~k~rl~fIDtPGd--l~s-mld~akvADlVLl 146 (1068)
....|+|+|.+|+|||||+|+|++.........+.+ ...+ .......+.|+||||. +.. ....+..+|++||
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 101 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEE
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEE
Confidence 457899999999999999999998642221111111 1112 2245678999999993 334 4456789999999
Q ss_pred EEeCCCCCchh-HHHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 147 LIDASHGFEME-TFEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 147 VIDas~g~e~~-t~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
|+|++....-+ ...++..+.. .++| +|+|+||+|+...........+.+...+ +.++|.+||++|
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~---- 170 (191)
T 3dz8_A 102 MYDITNEESFNAVQDWATQIKTYSWDNAQ-VILVGNKCDMEEERVVPTEKGQLLAEQL------GFDFFEASAKEN---- 170 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCHHHHHHHHHHH------TCEEEECBTTTT----
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccCHHHHHHHHHHc------CCeEEEEECCCC----
Confidence 99998532211 1234455544 4666 8999999998642111111122222222 568999999965
Q ss_pred chhhcchHHHHHHh
Q 046721 223 KKDIGNLAEFISVM 236 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~ 236 (1068)
..+.++...|...
T Consensus 171 -~gi~~l~~~l~~~ 183 (191)
T 3dz8_A 171 -ISVRQAFERLVDA 183 (191)
T ss_dssp -BSHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHH
Confidence 5566666555443
No 116
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.33 E-value=5.9e-12 Score=128.95 Aligned_cols=149 Identities=13% Similarity=0.158 Sum_probs=92.5
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE--EE-eCCCeeEEEEeCCCC--hhHHHHHHHhcCEEEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT--VV-SGKKRRLQFVECPND--INGMIDCAKFADLALLLI 148 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It--i~-~~~k~rl~fIDtPGd--l~smld~akvADlVLlVI 148 (1068)
....|+|+|.+|||||||+++|++.. ......++...+. +. ......+.|+||||. +..+...++.||++|+|+
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ilv~ 99 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNCERYLNWAHAFLVVY 99 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCTHHHHTTCSEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhHHHHHhhCCEEEEEE
Confidence 44789999999999999999999864 2222233222221 21 233567899999993 334556778999999999
Q ss_pred eCCCCCchhH-HHHHHHHHh------CCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEec-ccCC
Q 046721 149 DASHGFEMET-FEFLNLMQN------HGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSG-LIQG 219 (1068)
Q Consensus 149 Das~g~e~~t-~eiL~~L~~------~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISA-l~g~ 219 (1068)
|++....-.. ...+..+.. .++| +|+|+||+|+..... ......+.. ..+ +.++|.+|| +++
T Consensus 100 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~-~~~------~~~~~e~Sa~~~g- 170 (187)
T 3c5c_A 100 SVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKLDMAQYRQVTKAEGVALA-GRF------GCLFFEVSACLDF- 170 (187)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGGGGGCSSCHHHHHHHH-HHH------TCEEEECCSSSCS-
T ss_pred ECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcchhhcCccCHHHHHHHH-HHc------CCcEEEEeecCcc-
Confidence 9985322211 123333332 4777 899999999964211 111222222 222 468999999 754
Q ss_pred cCCchhhcchHHHHHHh
Q 046721 220 KYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 220 ~y~~~ei~nLlR~I~~~ 236 (1068)
.++..+...|...
T Consensus 171 ----~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 171 ----EHVQHVFHEAVRE 183 (187)
T ss_dssp ----HHHHHHHHHHHHH
T ss_pred ----ccHHHHHHHHHHH
Confidence 6666676665443
No 117
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.32 E-value=4.2e-12 Score=130.51 Aligned_cols=148 Identities=13% Similarity=0.121 Sum_probs=90.5
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEE-EEeCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEEeC
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVT-VVSGKKRRLQFVECPND--ING-MIDCAKFADLALLLIDA 150 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVIDa 150 (1068)
++..|+|+|.+|||||||+++|++........+ .+... .+...+..+.++||||. +.. ....+..||++|||+|+
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 100 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPT-WHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA 100 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCC-CSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEET
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccC-CCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEEC
Confidence 456899999999999999999998643222112 12211 22234589999999994 333 23345789999999999
Q ss_pred CCCCchh--HHHHHHHHH---hCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccc---------ccCCCeEEEEecc
Q 046721 151 SHGFEME--TFEFLNLMQ---NHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTE---------LYHGAKLFKLSGL 216 (1068)
Q Consensus 151 s~g~e~~--t~eiL~~L~---~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e---------~~~~~kVf~ISAl 216 (1068)
+.+..-. ...+..++. ..+.| +|+|+||+|+... .....+. +.+... .....++|++||+
T Consensus 101 ~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 174 (190)
T 1m2o_B 101 ADPERFDEARVELDALFNIAELKDVP-FVILGNKIDAPNA-VSEAELR----SALGLLNTTGSQRIEGQRPVEVFMCSVV 174 (190)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTC-CCHHHHH----HHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred CChHHHHHHHHHHHHHHcchhhcCCC-EEEEEECCCCcCC-CCHHHHH----HHhCCccccccccccccceEEEEEeECC
Confidence 8653222 122223332 24677 8999999999752 1112222 222111 1235679999999
Q ss_pred cCCcCCchhhcchHHHHH
Q 046721 217 IQGKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 217 ~g~~y~~~ei~nLlR~I~ 234 (1068)
+| .++.++...|.
T Consensus 175 ~g-----~gi~~l~~~l~ 187 (190)
T 1m2o_B 175 MR-----NGYLEAFQWLS 187 (190)
T ss_dssp TT-----BSHHHHHHHHH
T ss_pred cC-----CCHHHHHHHHH
Confidence 65 55666665553
No 118
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.32 E-value=1.7e-11 Score=140.19 Aligned_cols=153 Identities=17% Similarity=0.223 Sum_probs=93.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc--cCCCCceeccEE-EEeCCCeeEEEEeCCCC-----------hhHHHHHHHhc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT--KLKVPEVRGPVT-VVSGKKRRLQFVECPND-----------INGMIDCAKFA 141 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~--~~~~~tt~~~It-i~~~~k~rl~fIDtPGd-----------l~smld~akvA 141 (1068)
..+|+|+|++|||||||+|+|++... ...+.+|..+++ .+...+..+.++||||- +.+++..+..|
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~a 258 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYS 258 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGS
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhC
Confidence 34799999999999999999998742 233344444333 22223478999999993 23466778999
Q ss_pred CEEEEEEeCCCCC--ch-hHHHHHHHHHh---CCCCcEEEEEeCCCcCCcH-HHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 142 DLALLLIDASHGF--EM-ETFEFLNLMQN---HGLPNVMGVLTHLDKFTDK-KKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 142 DlVLlVIDas~g~--e~-~t~eiL~~L~~---~GlP~vIvVLNKiDlvk~~-k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
|++|+|+|++.+. .. +...+...|.. .+.| +|+|+||+|+.... .........+...+ .....+++++|
T Consensus 259 D~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p-~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l---~~~~~~~~~~S 334 (364)
T 2qtf_A 259 DALILVIDSTFSENLLIETLQSSFEILREIGVSGKP-ILVTLNKIDKINGDLYKKLDLVEKLSKEL---YSPIFDVIPIS 334 (364)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCC-EEEEEECGGGCCSCHHHHHHHHHHHHHHH---CSCEEEEEECB
T ss_pred CEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCC-EEEEEECCCCCCchHHHHHHHHHHHHHHh---cCCCCcEEEEE
Confidence 9999999998764 11 11122333333 4567 89999999998632 11111111111111 02244689999
Q ss_pred cccCCcCCchhhcchHHHHHHhh
Q 046721 215 GLIQGKYTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 215 Al~g~~y~~~ei~nLlR~I~~~k 237 (1068)
|+++ .++..|...|....
T Consensus 335 A~~g-----~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 335 ALKR-----TNLELLRDKIYQLA 352 (364)
T ss_dssp TTTT-----BSHHHHHHHHHHHH
T ss_pred CCCC-----cCHHHHHHHHHHHh
Confidence 9965 56666776665543
No 119
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.32 E-value=4.8e-12 Score=130.39 Aligned_cols=152 Identities=13% Similarity=0.142 Sum_probs=91.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCC-CCce-eccEE--EEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLK-VPEV-RGPVT--VVS-GKKRRLQFVECPND--ING-MIDCAKFADLAL 145 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~-~~tt-~~~It--i~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVL 145 (1068)
..+..|+|+|.+|+|||||+++|++...... ..++ ....+ +.. +....+.|+||||. +.. ....++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 3467899999999999999999998742221 1111 11111 222 23468999999993 222 334568899999
Q ss_pred EEEeCCCCCchhHH-HHHHHHHh-------CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEeccc
Q 046721 146 LLIDASHGFEMETF-EFLNLMQN-------HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLI 217 (1068)
Q Consensus 146 lVIDas~g~e~~t~-eiL~~L~~-------~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~ 217 (1068)
||+|++.+...... .++..+.. .++| +|+|+||+|+.............. .. ..+.++|.+||++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~-~~-----~~~~~~~~~Sa~~ 158 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-FVVLGNKIDLENRQVATKRAQAWC-YS-----KNNIPYFETSAKE 158 (207)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTTSSCCCSCHHHHHHHH-HH-----TTSCCEEECBTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc-EEEEEECCCCcccccCHHHHHHHH-Hh-----cCCceEEEEeCCC
Confidence 99999864322111 22222211 3667 899999999974211112222211 11 2466899999996
Q ss_pred CCcCCchhhcchHHHHHHhh
Q 046721 218 QGKYTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 218 g~~y~~~ei~nLlR~I~~~k 237 (1068)
| .++..+...|....
T Consensus 159 g-----~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 159 A-----INVEQAFQTIARNA 173 (207)
T ss_dssp T-----BSHHHHHHHHHHHH
T ss_pred C-----CCHHHHHHHHHHHH
Confidence 5 55666665554433
No 120
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.31 E-value=3.1e-12 Score=132.16 Aligned_cols=151 Identities=14% Similarity=0.096 Sum_probs=92.5
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccC-CCCceeccEE-EE--eCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVRGPVT-VV--SGKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~~~It-i~--~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
....|+|+|.+|||||||+|+|++..... ...++...+. .. ......+.|+||||. +.. ....+..+|++|+|
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 102 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLV 102 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEE
Confidence 35789999999999999999999874322 2222222222 22 234678899999993 333 34456889999999
Q ss_pred EeCCCCCchhH-HHHHHHHHh----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 148 IDASHGFEMET-FEFLNLMQN----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 148 IDas~g~e~~t-~eiL~~L~~----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
+|++....... ...+..+.. .++| +|+|+||+|+.............+...+ +.++|.+||+++
T Consensus 103 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~~~------~~~~~~~Sa~~~---- 171 (201)
T 3oes_A 103 YSVTSLHSFQVIESLYQKLHEGHGKTRVP-VVLVGNKADLSPEREVQAVEGKKLAESW------GATFMESSAREN---- 171 (201)
T ss_dssp EETTCHHHHHHHHHHHHHHHC-----CCC-EEEEEECTTCGGGCCSCHHHHHHHHHHH------TCEEEECCTTCH----
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCccccccCHHHHHHHHHHh------CCeEEEEeCCCC----
Confidence 99985322211 123333332 3677 8999999998742211111112222222 568999999854
Q ss_pred chhhcchHHHHHHhh
Q 046721 223 KKDIGNLAEFISVMK 237 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~k 237 (1068)
..+..+...|....
T Consensus 172 -~~v~~l~~~l~~~i 185 (201)
T 3oes_A 172 -QLTQGIFTKVIQEI 185 (201)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHH
Confidence 66777776665444
No 121
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.31 E-value=1.7e-11 Score=125.45 Aligned_cols=149 Identities=19% Similarity=0.223 Sum_probs=93.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE--EEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT--VVS-GKKRRLQFVECPND--ING-MIDCAKFADLALLLI 148 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It--i~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVI 148 (1068)
...|+|+|.+|+|||||+++|++.. ......++...+. +.. +....+.|+||||. +.. ....+..+|++|||+
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 97 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 97 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEE
Confidence 4689999999999999999999863 2222333322222 222 23468899999993 433 233467899999999
Q ss_pred eCCCCCchhHH--HHHHHHHhC--CCCcEEEEEeCCCcCCcHHHH-------------HHHHHHHHHHhcccccCCCeEE
Q 046721 149 DASHGFEMETF--EFLNLMQNH--GLPNVMGVLTHLDKFTDKKKL-------------RKTKQHLKHRFGTELYHGAKLF 211 (1068)
Q Consensus 149 Das~g~e~~t~--eiL~~L~~~--GlP~vIvVLNKiDlvk~~k~l-------------~~vkk~Lk~~~~~e~~~~~kVf 211 (1068)
|++....-... .++..+... ++| +|+|+||+|+....... .... .+...+ ...++|
T Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~-----~~~~~~ 170 (194)
T 2atx_A 98 SVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQ-KLAKEI-----GACCYV 170 (194)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHH-HHHHHH-----TCSCEE
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhcccccchhhcccccCcccCHHHHH-HHHHHc-----CCcEEE
Confidence 99865322221 345555544 777 89999999997632111 1111 111111 223799
Q ss_pred EEecccCCcCCchhhcchHHHHHHh
Q 046721 212 KLSGLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 212 ~ISAl~g~~y~~~ei~nLlR~I~~~ 236 (1068)
.+||++| .++..+...|...
T Consensus 171 ~~Sa~~g-----~gi~~l~~~l~~~ 190 (194)
T 2atx_A 171 ECSALTQ-----KGLKTVFDEAIIA 190 (194)
T ss_dssp ECCTTTC-----TTHHHHHHHHHHH
T ss_pred EeeCCCC-----CCHHHHHHHHHHH
Confidence 9999965 5666666666543
No 122
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.31 E-value=6.4e-12 Score=127.49 Aligned_cols=147 Identities=18% Similarity=0.234 Sum_probs=92.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCCCeeEEEEeCCCC--hh------HHHH-HH--Hhc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGKKRRLQFVECPND--IN------GMID-CA--KFA 141 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd--l~------smld-~a--kvA 141 (1068)
+..|+|+|++|||||||+++|++.. +...+.++..... .+......+.++||||. +. .+.. .+ ..+
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 86 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 86 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCC
Confidence 4689999999999999999999852 2222222222111 22334678999999993 21 2222 22 359
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 142 DLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 142 DlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
|++++|+|++. ++ ....++..+...+.| +|+|+||+|+.... .+....+.+...+ +.+++++||+++
T Consensus 87 ~~~i~v~d~~~-~~-~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~~~~~~~~~~~~~------~~~~~~~Sa~~~--- 153 (188)
T 2wjg_A 87 DLVVNIVDATA-LE-RNLYLTLQLMEMGAN-LLLALNKMDLAKSL-GIEIDVDKLEKIL------GVKVVPLSAAKK--- 153 (188)
T ss_dssp SEEEEEEEGGG-HH-HHHHHHHHHHTTTCC-EEEEEECHHHHHHT-TCCCCHHHHHHHH------TSCEEECBGGGT---
T ss_pred CEEEEEecchh-HH-HHHHHHHHHHhcCCC-EEEEEEhhhccccc-cchHHHHHHHHHh------CCCeEEEEecCC---
Confidence 99999999974 22 223455566667888 89999999986311 1111122232222 468999999865
Q ss_pred CchhhcchHHHHHHhh
Q 046721 222 TKKDIGNLAEFISVMK 237 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~~k 237 (1068)
..+..+...|....
T Consensus 154 --~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 154 --MGIEELKKAISIAV 167 (188)
T ss_dssp --BSHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHH
Confidence 56666776665544
No 123
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.31 E-value=9e-12 Score=123.79 Aligned_cols=147 Identities=19% Similarity=0.216 Sum_probs=84.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccC--CCCceeccEE--E-EeCCCeeEEEEeCCCC--hhH-HHH-HHHhcCEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKL--KVPEVRGPVT--V-VSGKKRRLQFVECPND--ING-MID-CAKFADLALLL 147 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~--~~~tt~~~It--i-~~~~k~rl~fIDtPGd--l~s-mld-~akvADlVLlV 147 (1068)
..|+|+|.+|+|||||+++|++..... ....+..... + ..+....+.++||||. +.. +.. .++.+|++|+|
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 82 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIV 82 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEE
Confidence 579999999999999999998653111 1111111111 2 2233568889999993 333 222 36789999999
Q ss_pred EeCCCCCc--hhHHHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 148 IDASHGFE--METFEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 148 IDas~g~e--~~t~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
+|++..-. .....+..+... .++| +|+|+||+|+.............+...+ +.++|.+||+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~---- 151 (169)
T 3q85_A 83 FSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSREVSLEEGRHLAGTL------SCKHIETSAALH---- 151 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCGGGCCSCHHHHHHHHHHT------TCEEEECBTTTT----
T ss_pred EECCChHHHHHHHHHHHHHHhcccCCCCC-EEEEeeCcchhhcccCCHHHHHHHHHHc------CCcEEEecCccC----
Confidence 99986322 111223333332 2677 8999999998742111111122222222 568999999865
Q ss_pred chhhcchHHHHHH
Q 046721 223 KKDIGNLAEFISV 235 (1068)
Q Consensus 223 ~~ei~nLlR~I~~ 235 (1068)
..+.++...|..
T Consensus 152 -~~v~~l~~~l~~ 163 (169)
T 3q85_A 152 -HNTRELFEGAVR 163 (169)
T ss_dssp -BSHHHHHHHHHH
T ss_pred -CCHHHHHHHHHH
Confidence 556666655543
No 124
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.30 E-value=8.1e-12 Score=129.83 Aligned_cols=154 Identities=19% Similarity=0.172 Sum_probs=94.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE-EEe--CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT-VVS--GKKRRLQFVECPND--ING-MIDCAKFADLALL 146 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It-i~~--~~k~rl~fIDtPGd--l~s-mld~akvADlVLl 146 (1068)
..+..|+|+|.+|||||||+++|++.. ......++...+. ... +....+.|+||||. +.. ....+..||++||
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 107 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 107 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 456899999999999999999999753 3233333322222 112 33556779999993 333 2335688999999
Q ss_pred EEeCCCCCchhHH--HHHHHHHhC--CCCcEEEEEeCCCcCCcHHHHHHHHH---------HHHHHhcccccCCCeEEEE
Q 046721 147 LIDASHGFEMETF--EFLNLMQNH--GLPNVMGVLTHLDKFTDKKKLRKTKQ---------HLKHRFGTELYHGAKLFKL 213 (1068)
Q Consensus 147 VIDas~g~e~~t~--eiL~~L~~~--GlP~vIvVLNKiDlvk~~k~l~~vkk---------~Lk~~~~~e~~~~~kVf~I 213 (1068)
|+|++.+...... .++..+... ++| +|+|+||+|+............ ..... . ......++|++
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-~-~~~~~~~~~~~ 184 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM-A-KEIGAVKYLEC 184 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH-H-HHTTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhccchhhhhhhhccccccccHHHHHHH-H-HhcCCcEEEEe
Confidence 9999865433322 345555544 777 8999999999864322111110 01111 0 11234579999
Q ss_pred ecccCCcCCchhhcchHHHHHH
Q 046721 214 SGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 214 SAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
||++| .++..+...|..
T Consensus 185 SA~~g-----~gi~~l~~~l~~ 201 (204)
T 4gzl_A 185 SALTQ-----RGLKTVFDEAIR 201 (204)
T ss_dssp CTTTC-----TTHHHHHHHHHH
T ss_pred eCCCC-----CCHHHHHHHHHH
Confidence 99965 566666655543
No 125
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.30 E-value=4.3e-12 Score=129.97 Aligned_cols=152 Identities=14% Similarity=0.112 Sum_probs=93.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc-cCCCCceeccEE--E-EeCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT-KLKVPEVRGPVT--V-VSGKKRRLQFVECPND--INGM-IDCAKFADLALL 146 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~-~~~~~tt~~~It--i-~~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLl 146 (1068)
..+..|+|+|.+|+|||||+++|++... .....++...+. + ..+....+.|+||||. +..+ ...+..+|++||
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 100 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLL 100 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEE
Confidence 3457899999999999999999998742 222222222222 1 1223556799999993 3333 335688999999
Q ss_pred EEeCCCCCchhH--HHHHHHHHhC--CCCcEEEEEeCCCcCCcH--H-HHHHHHHHHHHHhcccccCCCeEEEEecccCC
Q 046721 147 LIDASHGFEMET--FEFLNLMQNH--GLPNVMGVLTHLDKFTDK--K-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQG 219 (1068)
Q Consensus 147 VIDas~g~e~~t--~eiL~~L~~~--GlP~vIvVLNKiDlvk~~--k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~ 219 (1068)
|+|++....-.. ..++..+... ++| +|+|+||+|+.... . ...... .+...+ ....+|.+||++|
T Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~Sa~~~- 172 (194)
T 3reg_A 101 CFAVNNRTSFDNISTKWEPEIKHYIDTAK-TVLVGLKVDLRKDGSDDVTKQEGD-DLCQKL-----GCVAYIEASSVAK- 172 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSE-EEEEEECGGGCCTTTTCCCHHHHH-HHHHHH-----TCSCEEECBTTTT-
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccCCCCcccHHHHH-HHHHhc-----CCCEEEEeecCCC-
Confidence 999986533222 2344444433 566 89999999987421 0 111222 222222 2233999999965
Q ss_pred cCCchhhcchHHHHHHhh
Q 046721 220 KYTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 220 ~y~~~ei~nLlR~I~~~k 237 (1068)
.++..+...|....
T Consensus 173 ----~gi~~l~~~l~~~i 186 (194)
T 3reg_A 173 ----IGLNEVFEKSVDCI 186 (194)
T ss_dssp ----BSHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHH
Confidence 56667766665443
No 126
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.30 E-value=5.1e-12 Score=131.77 Aligned_cols=149 Identities=14% Similarity=0.175 Sum_probs=89.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCCCCceec-cE---EE-EeCC----------CeeEEEEeCCCC--hhH-HHHH
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRG-PV---TV-VSGK----------KRRLQFVECPND--ING-MIDC 137 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~-~I---ti-~~~~----------k~rl~fIDtPGd--l~s-mld~ 137 (1068)
...|+|+|.+|||||||+++|++.........+.+ .+ .+ .... ..++.|+||||. +.. ....
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 104 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF 104 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHH
Confidence 47899999999999999999998632211111111 01 11 1122 468999999993 444 4456
Q ss_pred HHhcCEEEEEEeCCCCCchhHH-HHHHHHHh----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEE
Q 046721 138 AKFADLALLLIDASHGFEMETF-EFLNLMQN----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFK 212 (1068)
Q Consensus 138 akvADlVLlVIDas~g~e~~t~-eiL~~L~~----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ 212 (1068)
+..+|++|||+|++........ .++..+.. .++| +|+|+||+|+.............+...+ +.++|.
T Consensus 105 ~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~~~~v~~~~~~~~~~~~------~~~~~~ 177 (217)
T 2f7s_A 105 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD-IVLIGNKADLPDQREVNERQARELADKY------GIPYFE 177 (217)
T ss_dssp HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCE-EEEEEECTTCGGGCCSCHHHHHHHHHHT------TCCEEE
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCC-EEEEEECCccccccccCHHHHHHHHHHC------CCcEEE
Confidence 7899999999999864322211 22322222 3455 8999999999742111011112222221 468999
Q ss_pred EecccCCcCCchhhcchHHHHHHh
Q 046721 213 LSGLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 213 ISAl~g~~y~~~ei~nLlR~I~~~ 236 (1068)
+||+++ ..+..+...|...
T Consensus 178 ~Sa~~g-----~gi~~l~~~l~~~ 196 (217)
T 2f7s_A 178 TSAATG-----QNVEKAVETLLDL 196 (217)
T ss_dssp EBTTTT-----BTHHHHHHHHHHH
T ss_pred EECCCC-----CCHHHHHHHHHHH
Confidence 999865 5566666555443
No 127
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.30 E-value=8.6e-12 Score=124.99 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=87.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccC-CCCcee-ccEE--EEe--CCCeeEEEEeCCCC--hhH-HHHHHHhcCEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVR-GPVT--VVS--GKKRRLQFVECPND--ING-MIDCAKFADLA 144 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~-~~It--i~~--~~k~rl~fIDtPGd--l~s-mld~akvADlV 144 (1068)
..+..|+|+|.+|+|||||+++|++..... ...+.. .... +.. .....+.|+||||. +.. ....+..+|++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 346789999999999999999999864221 111111 1111 211 23568999999993 333 33346889999
Q ss_pred EEEEeCCCCCchhH-HHHHHHHHh-------CCCCcEEEEEeCCCcCCcHH--HHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 145 LLLIDASHGFEMET-FEFLNLMQN-------HGLPNVMGVLTHLDKFTDKK--KLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 145 LlVIDas~g~e~~t-~eiL~~L~~-------~GlP~vIvVLNKiDlvk~~k--~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
|+|+|++.+..... ..++..+.. .++| +++|+||+|+..... ..... ..+... ....++|.+|
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~v~~~~~-~~~~~~-----~~~~~~~~~S 158 (182)
T 1ky3_A 86 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP-FVILGNKIDAEESKKIVSEKSA-QELAKS-----LGDIPLFLTS 158 (182)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECTTSCGGGCCSCHHHH-HHHHHH-----TTSCCEEEEB
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCc-EEEEEECCccccccccCCHHHH-HHHHHh-----cCCCeEEEEe
Confidence 99999986432221 122322222 4667 899999999964211 01112 122111 2467899999
Q ss_pred cccCCcCCchhhcchHHHHHHh
Q 046721 215 GLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 215 Al~g~~y~~~ei~nLlR~I~~~ 236 (1068)
|++| .++..+...|...
T Consensus 159 a~~~-----~gi~~l~~~l~~~ 175 (182)
T 1ky3_A 159 AKNA-----INVDTAFEEIARS 175 (182)
T ss_dssp TTTT-----BSHHHHHHHHHHH
T ss_pred cCCC-----CCHHHHHHHHHHH
Confidence 9865 5566666655443
No 128
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.29 E-value=4.8e-11 Score=149.93 Aligned_cols=143 Identities=18% Similarity=0.212 Sum_probs=97.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc---ccC-----CC-----CceeccEE-------EEe---------------CCCe
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY---TKL-----KV-----PEVRGPVT-------VVS---------------GKKR 120 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~---~~~-----~~-----~tt~~~It-------i~~---------------~~k~ 120 (1068)
.+.|+|||++|+|||||+++|+... ... .. .+....+| +.. +...
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 4789999999999999999999752 100 00 00011122 111 1257
Q ss_pred eEEEEeCCC--ChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC-----c----HHH
Q 046721 121 RLQFVECPN--DING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT-----D----KKK 188 (1068)
Q Consensus 121 rl~fIDtPG--dl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk-----~----~k~ 188 (1068)
.+.|||||| +|.. +..+++.||++|+|+|++.+...++..++..+...++| +|+|+||+|+.. + ...
T Consensus 99 ~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~ilviNK~D~~~~e~~~~~~e~~~~ 177 (842)
T 1n0u_A 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIK-PVVVINKVDRALLELQVSKEDLYQT 177 (842)
T ss_dssp EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCE-EEEEEECHHHHHHTSCCCHHHHHHH
T ss_pred eEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-eEEEEECCCcchhhhccCHHHHHHH
Confidence 899999999 5655 67788999999999999999999998888887788998 688999999862 1 123
Q ss_pred HHHHHHHHHHHhcc----------cccCCCeEEEEecccCC
Q 046721 189 LRKTKQHLKHRFGT----------ELYHGAKLFKLSGLIQG 219 (1068)
Q Consensus 189 l~~vkk~Lk~~~~~----------e~~~~~kVf~ISAl~g~ 219 (1068)
+..+...+...+.. ..+....|...||+.||
T Consensus 178 ~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~ 218 (842)
T 1n0u_A 178 FARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGW 218 (842)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTE
T ss_pred HHHHHHHHHHHHhhccccccCceeeceEEeeeEEeeccccc
Confidence 45555555555421 01112257778887764
No 129
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.29 E-value=2e-11 Score=131.85 Aligned_cols=158 Identities=13% Similarity=0.153 Sum_probs=96.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccC---CC-CceeccEE-EEeCCCeeEEEEeCCCCh-----------hHHHHH
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKL---KV-PEVRGPVT-VVSGKKRRLQFVECPNDI-----------NGMIDC 137 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~---~~-~tt~~~It-i~~~~k~rl~fIDtPGdl-----------~smld~ 137 (1068)
.++..|+|||.+|||||||+|+|++..... .. .+|..... .......+++|+||||-+ ..+..+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 457899999999999999999999974321 11 13333333 334457899999999931 123333
Q ss_pred H----HhcCEEEEEEeCCCCCchhHHHHHHHHHhC------CCCcEEEEEeCCCcCCcHHHHHHHH-----HHHHHHhcc
Q 046721 138 A----KFADLALLLIDASHGFEMETFEFLNLMQNH------GLPNVMGVLTHLDKFTDKKKLRKTK-----QHLKHRFGT 202 (1068)
Q Consensus 138 a----kvADlVLlVIDas~g~e~~t~eiL~~L~~~------GlP~vIvVLNKiDlvk~~k~l~~vk-----k~Lk~~~~~ 202 (1068)
+ ..+|++|||+|++. ++.....++..+... +.| +|+|+||+|+.... +...+ ..++..+..
T Consensus 99 ~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~-iilv~nK~Dl~~~~--~~~~l~~~~~~~l~~l~~~ 174 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWM-VIVFTRKEDLAGGS--LHDYVSNTENRALRELVAE 174 (247)
T ss_dssp HHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGE-EEEEECGGGGTTCC--HHHHHHHCCCHHHHHHHHH
T ss_pred HHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccE-EEEEEchHhcCCCC--HHHHHhhcccHHHHHHHHH
Confidence 3 89999999999985 776666777766653 566 88999999996421 11111 112222211
Q ss_pred cccCCCeEEEEecccCCcCCchhhcchHHHHHHhhc
Q 046721 203 ELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKF 238 (1068)
Q Consensus 203 e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~ 238 (1068)
.+.+++++++.....-....+..|+..|..+..
T Consensus 175 ---~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 175 ---CGGRVCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp ---TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cCCeEEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 144566666543200013566777766655443
No 130
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.29 E-value=3.9e-11 Score=121.48 Aligned_cols=148 Identities=21% Similarity=0.287 Sum_probs=90.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc--cCCCCceeccEEEEeCCCeeEEEEeCCCC-------------hhH----HHHH
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT--KLKVPEVRGPVTVVSGKKRRLQFVECPND-------------ING----MIDC 137 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~--~~~~~tt~~~Iti~~~~k~rl~fIDtPGd-------------l~s----mld~ 137 (1068)
..|+|+|.+|+|||||+++|++... ...+.++.....+... .+.++||||. +.. .+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK---NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 78 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET---TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC---CEEEEECCCccccccCCHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999998732 1222222222222222 7899999992 111 2222
Q ss_pred -HHhcCEEEEEEeCCCCC-----------chhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccccc
Q 046721 138 -AKFADLALLLIDASHGF-----------EMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELY 205 (1068)
Q Consensus 138 -akvADlVLlVIDas~g~-----------e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~ 205 (1068)
+..+++|++|+|++... .....+++..+...++| +++|+||+|+.... ....+.+...+...+.
T Consensus 79 ~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~ 154 (190)
T 2cxx_A 79 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP-TIVAVNKLDKIKNV---QEVINFLAEKFEVPLS 154 (190)
T ss_dssp HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC-EEEEEECGGGCSCH---HHHHHHHHHHHTCCGG
T ss_pred hhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc-eEEEeehHhccCcH---HHHHHHHHHHhhhhhh
Confidence 56678999999986321 11223455666667888 89999999998643 2222233333211000
Q ss_pred -CCCeEEEEecccCCcCCchhhcchHHHHHHh
Q 046721 206 -HGAKLFKLSGLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 206 -~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~ 236 (1068)
...++|++||++| .++..+...|...
T Consensus 155 ~~~~~~~~~Sa~~~-----~~v~~l~~~l~~~ 181 (190)
T 2cxx_A 155 EIDKVFIPISAKFG-----DNIERLKNRIFEV 181 (190)
T ss_dssp GHHHHEEECCTTTC-----TTHHHHHHHHHHH
T ss_pred ccCCcEEEEecCCC-----CCHHHHHHHHHHh
Confidence 0236899999965 5566666665443
No 131
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.29 E-value=4.4e-12 Score=149.77 Aligned_cols=144 Identities=18% Similarity=0.189 Sum_probs=85.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCC--hhH---------HHHHHHh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPND--ING---------MIDCAKF 140 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd--l~s---------mld~akv 140 (1068)
...|+|+|.||||||||+|+|++.. ++..+.+|+..+. .+...+..++|+||||. ... +...+..
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~ 312 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAE 312 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhccc
Confidence 3579999999999999999999873 4444555554333 23335678999999992 221 2334588
Q ss_pred cCEEEEEEeCCCCCch----hHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecc
Q 046721 141 ADLALLLIDASHGFEM----ETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGL 216 (1068)
Q Consensus 141 ADlVLlVIDas~g~e~----~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl 216 (1068)
||++|||+|++.+... ....++..+. +.| +|+|+||+|+..... .. .+.+... ...+++++||+
T Consensus 313 aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~p-iIvV~NK~Dl~~~~~-~~--~~~l~~~------~~~~~i~vSAk 380 (476)
T 3gee_A 313 ADLILYLLDLGTERLDDELTEIRELKAAHP--AAK-FLTVANKLDRAANAD-AL--IRAIADG------TGTEVIGISAL 380 (476)
T ss_dssp CSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSE-EEEEEECTTSCTTTH-HH--HHHHHHH------HTSCEEECBTT
T ss_pred CCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCC-EEEEEECcCCCCccc-hh--HHHHHhc------CCCceEEEEEC
Confidence 9999999999988765 3334444443 566 899999999986432 21 1223222 12579999999
Q ss_pred cCCcCCchhhcchHHHHHHh
Q 046721 217 IQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 217 ~g~~y~~~ei~nLlR~I~~~ 236 (1068)
+| .++..|...|...
T Consensus 381 tg-----~GI~eL~~~i~~~ 395 (476)
T 3gee_A 381 NG-----DGIDTLKQHMGDL 395 (476)
T ss_dssp TT-----BSHHHHHHHHTHH
T ss_pred CC-----CCHHHHHHHHHHH
Confidence 65 6677777666443
No 132
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.29 E-value=8e-12 Score=134.89 Aligned_cols=155 Identities=12% Similarity=0.091 Sum_probs=95.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc---cCCCC-ceeccEE-EEeCCCeeEEEEeCCCChh--------------HH
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT---KLKVP-EVRGPVT-VVSGKKRRLQFVECPNDIN--------------GM 134 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~---~~~~~-tt~~~It-i~~~~k~rl~fIDtPGdl~--------------sm 134 (1068)
..+..|+|+|++|||||||+|+|++... ...+. ++..... .......+++||||||... .+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999998642 11222 2333322 3344578999999999211 12
Q ss_pred HHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhC-----CCCcEEEEEe-CCCcCCcHHHHHHH--------HHHHHHHh
Q 046721 135 IDCAKFADLALLLIDASHGFEMETFEFLNLMQNH-----GLPNVMGVLT-HLDKFTDKKKLRKT--------KQHLKHRF 200 (1068)
Q Consensus 135 ld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~-----GlP~vIvVLN-KiDlvk~~k~l~~v--------kk~Lk~~~ 200 (1068)
...+..+|++|||+|++. ++.....++..+... +.| +|+|+| |+|+.... +... .+.+...+
T Consensus 100 ~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~-~i~vv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGH-TIVLFTHKEDLNGGS--LMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGG-EEEEEECGGGGTTCC--HHHHHHHCCCHHHHHHHHHT
T ss_pred HhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhcc-EEEEEEcccccCCcc--HHHHHHhcchHHHHHHHHHh
Confidence 234577999999999985 776666676766654 566 566666 99997431 1111 11121222
Q ss_pred cccccCCCeEEEEecccCCcCCchhhcchHHHHHHhhc
Q 046721 201 GTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVMKF 238 (1068)
Q Consensus 201 ~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~ 238 (1068)
...+..... +++||+++ .++..+...|.....
T Consensus 176 ~~~~~~~~~-~~~SA~~~-----~gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 176 GGRICAFNN-RAEGSNQD-----DQVKELMDCIEDLLM 207 (260)
T ss_dssp TTCEEECCT-TCCHHHHH-----HHHHHHHHHHHHHHH
T ss_pred CCeEEEecC-cccccccH-----HHHHHHHHHHHHHHH
Confidence 111111112 77898743 667777766655443
No 133
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.29 E-value=2.3e-12 Score=149.98 Aligned_cols=149 Identities=20% Similarity=0.242 Sum_probs=102.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc---cCCCCceeccEE--EEeCCCeeEEEEeCCCC--h--------hHHHHHH
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT---KLKVPEVRGPVT--VVSGKKRRLQFVECPND--I--------NGMIDCA 138 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~---~~~~~tt~~~It--i~~~~k~rl~fIDtPGd--l--------~smld~a 138 (1068)
...+.|+|+|++|+|||||+|+|++... .....++..+.. +......++.||||||. + ..+...+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l 111 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF 111 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH
Confidence 3467899999999999999999998742 223333333322 22233458999999992 2 2367778
Q ss_pred HhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 139 KFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 139 kvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
..||++|||+|+ +....+..++..+...++| +|+|+||+|+...... ...+. +... -+.++|++||++|
T Consensus 112 ~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~p-iIvV~NK~Dl~~~~~~--~~~~~----l~~~--~g~~v~~vSAktg 180 (423)
T 3qq5_A 112 YRADCGILVTDS--APTPYEDDVVNLFKEMEIP-FVVVVNKIDVLGEKAE--ELKGL----YESR--YEAKVLLVSALQK 180 (423)
T ss_dssp TSCSEEEEECSS--SCCHHHHHHHHHHHHTTCC-EEEECCCCTTTTCCCT--HHHHH----SSCC--TTCCCCCCSSCCT
T ss_pred hcCCEEEEEEeC--CChHHHHHHHHHHHhcCCC-EEEEEeCcCCCCccHH--HHHHH----HHHH--cCCCEEEEECCCC
Confidence 899999999999 6777788899999999999 8999999999863321 22222 2221 2468999999865
Q ss_pred CcCCchhhcchHHHHHHhhc
Q 046721 219 GKYTKKDIGNLAEFISVMKF 238 (1068)
Q Consensus 219 ~~y~~~ei~nLlR~I~~~k~ 238 (1068)
..+..+...|....+
T Consensus 181 -----~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 181 -----KGFDDIGKTISEILP 195 (423)
T ss_dssp -----TSTTTHHHHHHHHSC
T ss_pred -----CCHHHHHHHHHHhhh
Confidence 667788877765543
No 134
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.29 E-value=8.7e-12 Score=128.94 Aligned_cols=149 Identities=11% Similarity=0.096 Sum_probs=90.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccC-CCCceeccEE---EEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVRGPVT---VVS-GKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~~~It---i~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
...|+|+|.+|+|||||+++|++..... ...+....+. +.. +....+.|+||||. +.. ....+..+|++|||
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv 87 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV 87 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEE
Confidence 5789999999999999999999864221 1121111111 222 22458999999993 333 34456889999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 148 IDASHGFEMETF-EFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 148 IDas~g~e~~t~-eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
+|++.+...... .++..+.. .++| +|+|+||+|+.............+... .+.++|++||++|
T Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~g----- 155 (206)
T 2bcg_Y 88 YDVTDQESFNGVKMWLQEIDRYATSTVL-KLLVGNKCDLKDKRVVEYDVAKEFADA------NKMPFLETSALDS----- 155 (206)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSCHHHHHHHHHH------TTCCEEECCTTTC-----
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccCHHHHHHHHHH------cCCeEEEEeCCCC-----
Confidence 999864332221 23444433 3455 899999999975221111111122111 2468999999865
Q ss_pred hhhcchHHHHHHh
Q 046721 224 KDIGNLAEFISVM 236 (1068)
Q Consensus 224 ~ei~nLlR~I~~~ 236 (1068)
..+..+...|...
T Consensus 156 ~gi~~l~~~l~~~ 168 (206)
T 2bcg_Y 156 TNVEDAFLTMARQ 168 (206)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5566666555443
No 135
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.28 E-value=5.5e-12 Score=127.52 Aligned_cols=150 Identities=15% Similarity=0.124 Sum_probs=91.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccC-CCCceeccE--E-EEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVRGPV--T-VVS-GKKRRLQFVECPND--ING-MIDCAKFADLALL 146 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~~~I--t-i~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLl 146 (1068)
.+..|+|+|.+|+|||||+++|++..... ...++...+ . +.. +....+.|+||||. +.. ....+..+|++||
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 88 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL 88 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEE
Confidence 35789999999999999999999864221 111111111 1 222 22368999999994 444 3445688999999
Q ss_pred EEeCCCCCchhH-HHHHHHHH---hCCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 147 LIDASHGFEMET-FEFLNLMQ---NHGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 147 VIDas~g~e~~t-~eiL~~L~---~~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
|+|++.+..... ...+..+. ..++| +++|+||+|+..... ......+... . .+.++|.+||+++
T Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~-~------~~~~~~~~Sa~~~--- 157 (186)
T 2bme_A 89 VYDITSRETYNALTNWLTDARMLASQNIV-IILCGNKKDLDADREVTFLEASRFAQ-E------NELMFLETSALTG--- 157 (186)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSCHHHHHHHHH-H------TTCEEEECCTTTC---
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccCHHHHHHHHH-H------cCCEEEEecCCCC---
Confidence 999986432221 12333322 24666 899999999964211 1112222111 1 2568999999865
Q ss_pred CchhhcchHHHHHHhh
Q 046721 222 TKKDIGNLAEFISVMK 237 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~~k 237 (1068)
.++..+...|....
T Consensus 158 --~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 158 --ENVEEAFVQCARKI 171 (186)
T ss_dssp --TTHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHH
Confidence 55666665554433
No 136
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.28 E-value=5.5e-12 Score=142.01 Aligned_cols=152 Identities=9% Similarity=0.044 Sum_probs=95.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEEeCCC
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--ING-MIDCAKFADLALLLIDASH 152 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVIDas~ 152 (1068)
+..|+|+|.+|||||||+++|++........|....+..+......++|+||||. +.. ....++.+|++|||+|++.
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~ 244 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 244 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTC
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc
Confidence 3579999999999999999998764221111111111223346789999999993 444 4556789999999999975
Q ss_pred C--CchhHHHHHHHHHhC---CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhc
Q 046721 153 G--FEMETFEFLNLMQNH---GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIG 227 (1068)
Q Consensus 153 g--~e~~t~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~ 227 (1068)
. +......+..++... ++| +|+|+||+|+.... ....+...+...+ ....+.++|.+||++| .++.
T Consensus 245 ~~s~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~~-~~~~i~~~~~~~~--~~~~~~~~~~vSAk~g-----~gi~ 315 (329)
T 3o47_A 245 RERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNAM-NAAEITDKLGLHS--LRHRNWYIQATCATSG-----DGLY 315 (329)
T ss_dssp SSSHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCC-CHHHHHHHHTCTT--CCSSCEEEEECBTTTT-----BTHH
T ss_pred hHHHHHHHHHHHHHHhhhccCCCe-EEEEEECccCCccc-CHHHHHHHhchhh--hhcCCCEEEEEECCCC-----cCHH
Confidence 3 333333444444433 666 89999999997532 2233333321111 1124568999999865 5677
Q ss_pred chHHHHHHh
Q 046721 228 NLAEFISVM 236 (1068)
Q Consensus 228 nLlR~I~~~ 236 (1068)
.+...|...
T Consensus 316 el~~~l~~~ 324 (329)
T 3o47_A 316 EGLDWLSNQ 324 (329)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666543
No 137
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.28 E-value=1.6e-11 Score=127.29 Aligned_cols=149 Identities=12% Similarity=0.119 Sum_probs=90.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCCCCceec-cEE---EEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRG-PVT---VVS-GKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~-~It---i~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
...|+|+|.+|+|||||+++|++.........+.+ .+. +.. +....+.|+||||. +.. ....+..||++|||
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv 108 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILA 108 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEE
Confidence 47899999999999999999997642221111111 111 222 22468999999994 444 34567899999999
Q ss_pred EeCCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCC-eEEEEecccCCcC
Q 046721 148 IDASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGA-KLFKLSGLIQGKY 221 (1068)
Q Consensus 148 IDas~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~-kVf~ISAl~g~~y 221 (1068)
+|++....-+. ..++..+.. .++| +|+|+||+|+..... ......+.. ..+ +. ++|.+||+++
T Consensus 109 ~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v~~~~~~~~~-~~~------~~~~~~~~SA~~g--- 177 (201)
T 2hup_A 109 YDITKRSSFLSVPHWIEDVRKYAGSNIV-QLLIGNKSDLSELREVSLAEAQSLA-EHY------DILCAIETSAKDS--- 177 (201)
T ss_dssp EETTBHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCHHHHHHHH-HHT------TCSEEEECBTTTT---
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCccccccccCHHHHHHHH-HHc------CCCEEEEEeCCCC---
Confidence 99986432111 234444433 3566 899999999974211 112222221 111 44 8999999865
Q ss_pred CchhhcchHHHHHHhh
Q 046721 222 TKKDIGNLAEFISVMK 237 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~~k 237 (1068)
..+.++...|....
T Consensus 178 --~gi~~l~~~l~~~i 191 (201)
T 2hup_A 178 --SNVEEAFLRVATEL 191 (201)
T ss_dssp --BSHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHH
Confidence 55666666654443
No 138
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.28 E-value=1.1e-11 Score=128.64 Aligned_cols=152 Identities=17% Similarity=0.206 Sum_probs=95.3
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE--EEe-CCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT--VVS-GKKRRLQFVECPND--INGMI-DCAKFADLALLL 147 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It--i~~-~~k~rl~fIDtPGd--l~sml-d~akvADlVLlV 147 (1068)
....|+|+|.+|+|||||+++|++.. ......++...+. +.. +....+.|+||||. +..+. ..+..+|++|||
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 87 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 87 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEE
Confidence 45789999999999999999999763 2222233322222 222 23468999999993 44433 356889999999
Q ss_pred EeCCCCCchhHH--HHHHHHHhC--CCCcEEEEEeCCCcCCcHHH---------HHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 148 IDASHGFEMETF--EFLNLMQNH--GLPNVMGVLTHLDKFTDKKK---------LRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 148 IDas~g~e~~t~--eiL~~L~~~--GlP~vIvVLNKiDlvk~~k~---------l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
+|++....-... .++..+... ++| +|+|+||+|+...... .... ..+...+ ...++|.+|
T Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~v~~~~~-~~~~~~~-----~~~~~~~~S 160 (212)
T 2j0v_A 88 FSLISKASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLRDDKGYLADHTNVITSTQG-EELRKQI-----GAAAYIECS 160 (212)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCHHHHHTCSSCCCHHHH-HHHHHHH-----TCSEEEECC
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeCHHhhhCccccccccCCCCHHHH-HHHHHHc-----CCceEEEcc
Confidence 999864322221 344555443 777 8999999999764321 1111 2222222 234899999
Q ss_pred cccCCcCCchhhcchHHHHHHhhc
Q 046721 215 GLIQGKYTKKDIGNLAEFISVMKF 238 (1068)
Q Consensus 215 Al~g~~y~~~ei~nLlR~I~~~k~ 238 (1068)
|++| .++..+...|.....
T Consensus 161 a~~g-----~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 161 SKTQ-----QNVKAVFDTAIKVVL 179 (212)
T ss_dssp TTTC-----TTHHHHHHHHHHHHH
T ss_pred CCCC-----CCHHHHHHHHHHHHh
Confidence 9965 566667666654443
No 139
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.28 E-value=2.5e-11 Score=121.99 Aligned_cols=147 Identities=12% Similarity=0.150 Sum_probs=88.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEE--EE-eCCCeeEEEEeCCCChhHHHHHHHhcCEEEEEEeCC
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVT--VV-SGKKRRLQFVECPNDINGMIDCAKFADLALLLIDAS 151 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~It--i~-~~~k~rl~fIDtPGdl~smld~akvADlVLlVIDas 151 (1068)
+...|+|+|.+|||||||+++|++........++...+. +. .+....+.|+||||.-. ...++.||++|||+|++
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~~~~~~d~~ilv~D~~ 83 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD--AKFSGWADAVIFVFSLE 83 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC--HHHHHHCSEEEEEEETT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch--hHHHHhCCEEEEEEECc
Confidence 457899999999999999999998632222222211111 22 22346789999999543 34567899999999998
Q ss_pred CCCchhHH-HH---HHHHHh---CCCCcEEEEEeCCCcCC--cH-HHHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 152 HGFEMETF-EF---LNLMQN---HGLPNVMGVLTHLDKFT--DK-KKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 152 ~g~e~~t~-ei---L~~L~~---~GlP~vIvVLNKiDlvk--~~-k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
....-... .+ +..+.. .++| +|+|+||+|+.. .. -......+..+ .+ .+.++|.+||++|
T Consensus 84 ~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~v~~~~~~~~~~-~~-----~~~~~~~~Sa~~~--- 153 (178)
T 2iwr_A 84 DENSFQAVSRLHGQLSSLRGEGRGGLA-LALVGTQDRISASSPRVVGDARARALXA-DM-----KRCSYYETXATYG--- 153 (178)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSSSCCCE-EEEEEECTTCBTTBCCCSCHHHHHHHHH-HH-----SSEEEEEEBTTTT---
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccCcCCHHHHHHHHH-hh-----cCCeEEEEecccc---
Confidence 64322222 22 222332 2566 899999999841 10 01112222111 11 3568999999965
Q ss_pred CchhhcchHHHHHH
Q 046721 222 TKKDIGNLAEFISV 235 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~ 235 (1068)
.++..+...|..
T Consensus 154 --~~i~~lf~~l~~ 165 (178)
T 2iwr_A 154 --LNVDRVFQEVAQ 165 (178)
T ss_dssp --BTHHHHHHHHHH
T ss_pred --CCHHHHHHHHHH
Confidence 455555555443
No 140
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.27 E-value=5.3e-12 Score=143.13 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=97.3
Q ss_pred EEEEECCCCCChhHHHHHHHhccc--cCCCCceeccEE-EEeCC-CeeEEEEeCCCC---------h-hHHHHHHHhcCE
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHYT--KLKVPEVRGPVT-VVSGK-KRRLQFVECPND---------I-NGMIDCAKFADL 143 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~~--~~~~~tt~~~It-i~~~~-k~rl~fIDtPGd---------l-~smld~akvADl 143 (1068)
.|+|||.+|||||||||+|++... ...+.+|..+.. ++... ...++|+||||. + ...+..+..+|+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ 239 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 239 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccE
Confidence 589999999999999999998742 233334433332 34433 478999999992 2 236777788999
Q ss_pred EEEEEeCCCC---CchhH-HHHHHHHHh-----CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 144 ALLLIDASHG---FEMET-FEFLNLMQN-----HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 144 VLlVIDas~g---~e~~t-~eiL~~L~~-----~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
+|+|+|++.. -..+. ..++..|.. .++| +|+|+||+|+......+ +.+...+ ....++|++|
T Consensus 240 ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p-~ilV~NK~Dl~~~~e~~----~~l~~~l----~~~~~v~~iS 310 (342)
T 1lnz_A 240 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP-QIIVANKMDMPEAAENL----EAFKEKL----TDDYPVFPIS 310 (342)
T ss_dssp EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSC-BCBEEECTTSTTHHHHH----HHHHHHC----CSCCCBCCCS
T ss_pred EEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCC-EEEEEECccCCCCHHHH----HHHHHHh----hcCCCEEEEE
Confidence 9999999752 21122 245555554 3567 78999999998633222 3333333 1126789999
Q ss_pred cccCCcCCchhhcchHHHHHHhhc
Q 046721 215 GLIQGKYTKKDIGNLAEFISVMKF 238 (1068)
Q Consensus 215 Al~g~~y~~~ei~nLlR~I~~~k~ 238 (1068)
|+++ ..+..|...|.....
T Consensus 311 A~tg-----~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 311 AVTR-----EGLRELLFEVANQLE 329 (342)
T ss_dssp SCCS-----STTHHHHHHHHHHHT
T ss_pred CCCC-----cCHHHHHHHHHHHHh
Confidence 9865 667777777755543
No 141
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.27 E-value=4.4e-12 Score=130.35 Aligned_cols=147 Identities=19% Similarity=0.125 Sum_probs=64.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc--c-ccCCCCcee-cc-E-EEEeCC---CeeEEEEeCCCC--hhHH-HHHHHhcCE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH--Y-TKLKVPEVR-GP-V-TVVSGK---KRRLQFVECPND--INGM-IDCAKFADL 143 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~--~-~~~~~~tt~-~~-I-ti~~~~---k~rl~fIDtPGd--l~sm-ld~akvADl 143 (1068)
+..|+|+|.+|+|||||+++|++. . ......++. .. . .+.... ...+.|+||||. +..+ ...+..||+
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 99 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYY 99 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcE
Confidence 468999999999999999999987 2 222222221 11 1 122222 568999999995 3333 334578999
Q ss_pred EEEEEeCCCCCchhH-HHHHHHHHh------CCCCcEEEEEeCCCcCC-cHHH-HHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 144 ALLLIDASHGFEMET-FEFLNLMQN------HGLPNVMGVLTHLDKFT-DKKK-LRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 144 VLlVIDas~g~e~~t-~eiL~~L~~------~GlP~vIvVLNKiDlvk-~~k~-l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
+|||+|++.+..... ..++..+.. .++| +|+|+||+|+.. .... .....+.. ..+ +.++|.+|
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~v~~~~~~~~~-~~~------~~~~~~~S 171 (208)
T 2yc2_C 100 AILVFDVSSMESFESCKAWFELLKSARPDRERPLR-AVLVANKTDLPPQRHQVRLDMAQDWA-TTN------TLDFFDVS 171 (208)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCE-EEEEEECC-------CCCHHHHHHHH-HHT------TCEEEECC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCc-EEEEEECcccchhhccCCHHHHHHHH-HHc------CCEEEEec
Confidence 999999986543222 234444443 3666 899999999975 2110 12222221 111 46899999
Q ss_pred ccc-CCcCCchhhcchHHHHHH
Q 046721 215 GLI-QGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 215 Al~-g~~y~~~ei~nLlR~I~~ 235 (1068)
|++ + .++..+...|..
T Consensus 172 a~~~~-----~gi~~l~~~i~~ 188 (208)
T 2yc2_C 172 ANPPG-----KDADAPFLSIAT 188 (208)
T ss_dssp C------------CHHHHHHHH
T ss_pred cCCCC-----cCHHHHHHHHHH
Confidence 986 5 455566655543
No 142
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.27 E-value=7.6e-12 Score=137.24 Aligned_cols=152 Identities=14% Similarity=0.143 Sum_probs=93.5
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccC--------CCC----------------------ceec--------------
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKL--------KVP----------------------EVRG-------------- 110 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~--------~~~----------------------tt~~-------------- 110 (1068)
..+.|+|||.+|||||||+|+|++..... .+. ++..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 34689999999999999999999874211 111 1100
Q ss_pred ---------cEE--EEeCCCeeEEEEeCCCC---------------hhH-HHHHHHhcCEEE-EEEeCCCCCchhHH-HH
Q 046721 111 ---------PVT--VVSGKKRRLQFVECPND---------------ING-MIDCAKFADLAL-LLIDASHGFEMETF-EF 161 (1068)
Q Consensus 111 ---------~It--i~~~~k~rl~fIDtPGd---------------l~s-mld~akvADlVL-lVIDas~g~e~~t~-ei 161 (1068)
.+. +.......++||||||- +.. +..++..+|.+| +|+|++.++..+.. .+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 000 01111368999999992 112 345566777555 79999988876664 57
Q ss_pred HHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchHHHHHH
Q 046721 162 LNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 162 L~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
+..+...+.| +|+|+||+|+....... ...++..+........+++++||+++ .++..+...|..
T Consensus 185 ~~~~~~~~~~-~i~V~NK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~v~~~SA~~~-----~gi~~l~~~l~~ 249 (299)
T 2aka_B 185 AKEVDPQGQR-TIGVITKLDLMDEGTDA---RDVLENKLLPLRRGYIGVVNRSQKDI-----DGKKDITAALAA 249 (299)
T ss_dssp HHHHCTTCSS-EEEEEECGGGSCTTCCC---HHHHTTCSSCCTTCEEECCCCCCBCT-----TSCBCHHHHHHH
T ss_pred HHHhCCCCCe-EEEEEEccccCCCCchH---HHHHhCCcCcCCCCcEEEECCChhhc-----cccccHHHHHHH
Confidence 7777777888 89999999998632211 12222111111012357889999965 455555555443
No 143
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.26 E-value=1.1e-11 Score=128.42 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=88.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccC-CCCceeccE---EEEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVRGPV---TVVS-GKKRRLQFVECPND--ING-MIDCAKFADLALL 146 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~~~I---ti~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLl 146 (1068)
.+..|+|+|.+|||||||+|+|++..... ...+....+ .+.. +....+.|+||||. +.. ....++.||++||
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 103 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 103 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEE
Confidence 45789999999999999999999763221 111111111 1212 22468999999993 333 4456789999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 147 LIDASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 147 VIDas~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
|+|++.+...+. ...+..+.. .++| +|+|+||+|+..... ......+..+ . .+.++|.+||++|
T Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~-~------~~~~~~~~SA~~g--- 172 (200)
T 2o52_A 104 VYDITSRETYNSLAAWLTDARTLASPNIV-VILCGNKKDLDPEREVTFLEASRFAQ-E------NELMFLETSALTG--- 172 (200)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHTCTTCE-EEEEEECGGGGGGCCSCHHHHHHHHH-H------TTCEEEEECTTTC---
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCcccccccCHHHHHHHHH-H------cCCEEEEEeCCCC---
Confidence 999986432221 233333332 3666 899999999964211 1112222211 1 2568999999965
Q ss_pred CchhhcchHHHHHHh
Q 046721 222 TKKDIGNLAEFISVM 236 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~~ 236 (1068)
.++..+...|...
T Consensus 173 --~gi~~l~~~l~~~ 185 (200)
T 2o52_A 173 --ENVEEAFLKCART 185 (200)
T ss_dssp --TTHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHH
Confidence 5566666555443
No 144
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.26 E-value=2.4e-11 Score=124.99 Aligned_cols=152 Identities=20% Similarity=0.249 Sum_probs=89.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE--EEe-CCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT--VVS-GKKRRLQFVECPND--INGM-IDCAKFADLALL 146 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It--i~~-~~k~rl~fIDtPGd--l~sm-ld~akvADlVLl 146 (1068)
.....|+|+|.+|||||||+++|++.. ......++...+. +.. +....+.|+||||. +..+ ...+..+|++||
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 97 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLL 97 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEE
Confidence 456789999999999999999999763 2222233222222 112 22457889999993 3332 235688999999
Q ss_pred EEeCCCCCchhHH--HHHHHHHhC--CCCcEEEEEeCCCcCCcHHHHH------------HHHHHHHHHhcccccCCCeE
Q 046721 147 LIDASHGFEMETF--EFLNLMQNH--GLPNVMGVLTHLDKFTDKKKLR------------KTKQHLKHRFGTELYHGAKL 210 (1068)
Q Consensus 147 VIDas~g~e~~t~--eiL~~L~~~--GlP~vIvVLNKiDlvk~~k~l~------------~vkk~Lk~~~~~e~~~~~kV 210 (1068)
|+|++........ .++..+... ++| +|+|+||+|+........ .....+...+ ...++
T Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~ 171 (201)
T 2q3h_A 98 CFSVVSPSSFQNVSEKWVPEIRCHCPKAP-IILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI-----KAASY 171 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSSC-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH-----TCSEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc-----CCcEE
Confidence 9999864332222 244444433 677 899999999975321110 1111111111 23489
Q ss_pred EEEecccCCcCCchhhcchHHHHHHh
Q 046721 211 FKLSGLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 211 f~ISAl~g~~y~~~ei~nLlR~I~~~ 236 (1068)
|.+||+++ ..+..+...|...
T Consensus 172 ~~~Sa~~g-----~gi~~l~~~l~~~ 192 (201)
T 2q3h_A 172 IECSALTQ-----KNLKEVFDAAIVA 192 (201)
T ss_dssp EECCTTTC-----TTHHHHHHHHHHH
T ss_pred EEEecCCC-----CCHHHHHHHHHHH
Confidence 99999965 5566666555443
No 145
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.26 E-value=3.3e-12 Score=129.08 Aligned_cols=149 Identities=13% Similarity=0.164 Sum_probs=70.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCC-CCceeccE---EEE-eCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLK-VPEVRGPV---TVV-SGKKRRLQFVECPND--INGM-IDCAKFADLALL 146 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~-~~tt~~~I---ti~-~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLl 146 (1068)
....|+|+|.+|+|||||+++|++...... ..++...+ ++. .+....+.|+||||. +..+ ...+..||++||
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 86 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence 357899999999999999999997632111 11111011 121 123478999999993 3332 234678999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 147 LIDASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 147 VIDas~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
|+|++.+..-.. ..++..+.. .++| +|+|+||+|+..... ......+ +...+ +.++|.+||+++
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~-~~~~~------~~~~~~~Sa~~~--- 155 (183)
T 2fu5_C 87 VYDITNEKSFDNIRNWIRNIEEHASADVE-KMILGNKCDVNDKRQVSKERGEK-LALDY------GIKFMETSAKAN--- 155 (183)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEEC--CCSCCCSCHHHHHH-HHHHH------TCEEEECCC------
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccCCccCcCCHHHHHH-HHHHc------CCeEEEEeCCCC---
Confidence 999986432221 234444443 3566 899999999975211 1112222 21121 468999999865
Q ss_pred CchhhcchHHHHHHh
Q 046721 222 TKKDIGNLAEFISVM 236 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~~ 236 (1068)
..+..+...|...
T Consensus 156 --~~i~~l~~~l~~~ 168 (183)
T 2fu5_C 156 --INVENAFFTLARD 168 (183)
T ss_dssp --CCHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHH
Confidence 5566666555443
No 146
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.26 E-value=1.2e-11 Score=148.59 Aligned_cols=120 Identities=22% Similarity=0.255 Sum_probs=85.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc-----ccCCCCceeccEEEEeCCC------------------------------
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY-----TKLKVPEVRGPVTVVSGKK------------------------------ 119 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~-----~~~~~~tt~~~Iti~~~~k------------------------------ 119 (1068)
....|+|+|.+|+|||||+|+|++.. ++..+.|++ .+.+..+..
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-EEEEECCSSSEEECCC------------------CCCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-EEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999974 233333321 111211110
Q ss_pred -----------eeEEEEeCCCC-------------hhH-HHHHHHhcCEEEEEEeCCC-CCchhHHHHHHHHHhCCCCcE
Q 046721 120 -----------RRLQFVECPND-------------ING-MIDCAKFADLALLLIDASH-GFEMETFEFLNLMQNHGLPNV 173 (1068)
Q Consensus 120 -----------~rl~fIDtPGd-------------l~s-mld~akvADlVLlVIDas~-g~e~~t~eiL~~L~~~GlP~v 173 (1068)
.+++||||||- +.. +...+..||+||||+|++. ++..+...++..+...+.| +
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p-v 221 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDK-I 221 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG-E
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC-E
Confidence 47999999992 233 3456789999999999987 5666777888888777777 8
Q ss_pred EEEEeCCCcCCcHHHHHHHHHHHH
Q 046721 174 MGVLTHLDKFTDKKKLRKTKQHLK 197 (1068)
Q Consensus 174 IvVLNKiDlvk~~k~l~~vkk~Lk 197 (1068)
|+|+||+|++.. ..+..+...+.
T Consensus 222 ilVlNK~Dl~~~-~el~~~~~~l~ 244 (550)
T 2qpt_A 222 RVVLNKADMVET-QQLMRVYGALM 244 (550)
T ss_dssp EEEEECGGGSCH-HHHHHHHHHHH
T ss_pred EEEEECCCccCH-HHHHHHHHHhh
Confidence 999999999863 45555555554
No 147
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.26 E-value=1.1e-11 Score=129.15 Aligned_cols=148 Identities=15% Similarity=0.164 Sum_probs=89.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCCCCceec-cE---EEEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRG-PV---TVVS-GKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~-~I---ti~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
...|+|+|.+|||||||+++|++.........+.+ .+ ++.. +....+.|+||||. +.. ....+..||++|||
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 105 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT 105 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 47899999999999999999998643221111111 11 1222 22458999999994 444 33456889999999
Q ss_pred EeCCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCcHHH-HHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 148 IDASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTDKKK-LRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 148 IDas~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~-l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
+|++....-.. ...+..+.. .++| +|+|+||+|+...... ..... .+.... +.++|.+||++|
T Consensus 106 ~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v~~~~~~-~~~~~~------~~~~~~~Sa~~g---- 173 (201)
T 2ew1_A 106 YDITCEESFRCLPEWLREIEQYASNKVI-TVLVGNKIDLAERREVSQQRAE-EFSEAQ------DMYYLETSAKES---- 173 (201)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCSSCHHHHH-HHHHHH------TCCEEECCTTTC----
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccCHHHHH-HHHHHc------CCEEEEEeCCCC----
Confidence 99986432211 123333332 3556 8899999999742111 11111 121111 468999999965
Q ss_pred chhhcchHHHHHHh
Q 046721 223 KKDIGNLAEFISVM 236 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~ 236 (1068)
.++..+...|...
T Consensus 174 -~gv~~l~~~l~~~ 186 (201)
T 2ew1_A 174 -DNVEKLFLDLACR 186 (201)
T ss_dssp -TTHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHH
Confidence 5566666555443
No 148
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.25 E-value=3.3e-11 Score=148.48 Aligned_cols=109 Identities=18% Similarity=0.287 Sum_probs=77.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccc---cCCCCceec----------cEEEEe--C----------------------
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYT---KLKVPEVRG----------PVTVVS--G---------------------- 117 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~---~~~~~tt~~----------~Iti~~--~---------------------- 117 (1068)
.+..|+|+|.+|+|||||+|+|++... +..+.| .. .+++.. +
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T-~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT-AVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT-CCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc-cceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 468899999999999999999998732 222222 10 011110 0
Q ss_pred ---------------------C----CeeEEEEeCCCC-----h-hHHHHHHHhcCEEEEEEeCCCCCchhHHHHHH-HH
Q 046721 118 ---------------------K----KRRLQFVECPND-----I-NGMIDCAKFADLALLLIDASHGFEMETFEFLN-LM 165 (1068)
Q Consensus 118 ---------------------~----k~rl~fIDtPGd-----l-~smld~akvADlVLlVIDas~g~e~~t~eiL~-~L 165 (1068)
+ +..++||||||- . ..+...+..||+||||+|++.++......++. .+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 0 047999999992 2 23567789999999999999888776666554 55
Q ss_pred HhCCCCcEEEEEeCCCcCCc
Q 046721 166 QNHGLPNVMGVLTHLDKFTD 185 (1068)
Q Consensus 166 ~~~GlP~vIvVLNKiDlvk~ 185 (1068)
...+.| +|+|+||+|+..+
T Consensus 227 ~~~~~~-iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 227 KGRGLT-VFFLVNAWDQVRE 245 (695)
T ss_dssp TTSCCC-EEEEEECGGGGGG
T ss_pred HhhCCC-EEEEEECcccccc
Confidence 566888 8999999999753
No 149
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.25 E-value=4.8e-11 Score=122.14 Aligned_cols=148 Identities=12% Similarity=0.157 Sum_probs=90.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEE--EEe-CCCeeEEEEeCCCChhHHHHHHHhcCEEEEEEeC
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVT--VVS-GKKRRLQFVECPNDINGMIDCAKFADLALLLIDA 150 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~It--i~~-~~k~rl~fIDtPGdl~smld~akvADlVLlVIDa 150 (1068)
.+...|+|+|.+|||||||+++|++.........+.+.++ +.. +....+.|+||||.-... .+..||++|||+|+
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--~~~~~~~~i~v~d~ 95 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ--FAAWVDAVVFVFSL 95 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH--HHHHCSEEEEEEET
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh--eecCCCEEEEEEEC
Confidence 4457899999999999999999988632221111222222 222 234678889999942211 67789999999999
Q ss_pred CCCCchhH-HHHHHHHHh----CCCCcEEEEEeCCCcCC--cHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 151 SHGFEMET-FEFLNLMQN----HGLPNVMGVLTHLDKFT--DKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 151 s~g~e~~t-~eiL~~L~~----~GlP~vIvVLNKiDlvk--~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
+....-+. ..++..+.. .++| +|+|.||+|+.. ... ......+ +...+ ....+|.+||++|
T Consensus 96 ~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~v~~~~~~~-~~~~~-----~~~~~~e~Sa~~~---- 164 (184)
T 3ihw_A 96 EDEISFQTVYNYFLRLCSFRNASEVP-MVLVGTQDAISAANPRVIDDSRARK-LSTDL-----KRCTYYETCATYG---- 164 (184)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCGGGSC-EEEEEECTTCBTTBCCCSCHHHHHH-HHHHT-----TTCEEEEEBTTTT----
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccccCHHHHHH-HHHHc-----CCCeEEEecCCCC----
Confidence 86433222 234444444 3567 899999999842 110 0111222 21121 3478999999865
Q ss_pred chhhcchHHHHHH
Q 046721 223 KKDIGNLAEFISV 235 (1068)
Q Consensus 223 ~~ei~nLlR~I~~ 235 (1068)
.++.++...|..
T Consensus 165 -~gv~~lf~~l~~ 176 (184)
T 3ihw_A 165 -LNVERVFQDVAQ 176 (184)
T ss_dssp -BTHHHHHHHHHH
T ss_pred -CCHHHHHHHHHH
Confidence 556666655543
No 150
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.25 E-value=3.4e-11 Score=126.05 Aligned_cols=154 Identities=14% Similarity=0.131 Sum_probs=84.5
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccc-cCCCCceeccEE--EE-eCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYT-KLKVPEVRGPVT--VV-SGKKRRLQFVECPND--INGM-IDCAKFADLALLL 147 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~-~~~~~tt~~~It--i~-~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlV 147 (1068)
.+..|+|+|.+|||||||+++|++... .....++...+. +. .+....+.|+||||. +..+ ...+..||++|||
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 112 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLC 112 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEE
Confidence 357899999999999999999997532 111222211111 22 223458999999993 4443 3346899999999
Q ss_pred EeCCCCCchhHH--HHHHHHHh--CCCCcEEEEEeCCCcCCcHHHHHHHH----------HHHHHHhcccccCCCeEEEE
Q 046721 148 IDASHGFEMETF--EFLNLMQN--HGLPNVMGVLTHLDKFTDKKKLRKTK----------QHLKHRFGTELYHGAKLFKL 213 (1068)
Q Consensus 148 IDas~g~e~~t~--eiL~~L~~--~GlP~vIvVLNKiDlvk~~k~l~~vk----------k~Lk~~~~~e~~~~~kVf~I 213 (1068)
+|++.+..-... .++..+.. .++| +|+|+||+|+...... .... ...... ... ....++|.+
T Consensus 113 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~-~~~~~~~~~ 188 (214)
T 2j1l_A 113 FDVTSPNSFDNIFNRWYPEVNHFCKKVP-IIVVGCKTDLRKDKSL-VNKLRRNGLEPVTYHRGQEM-ARS-VGAVAYLEC 188 (214)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECGGGGSCHHH-HHHHHHTTCCCCCHHHHHHH-HHH-TTCSEEEEC
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhhccchh-hhhhcccccCcccHHHHHHH-HHh-cCCCEEEEe
Confidence 999864322221 23444433 3677 8999999999864321 1111 011111 111 123489999
Q ss_pred ecccCCcCCchhhcchHHHHHHhh
Q 046721 214 SGLIQGKYTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 214 SAl~g~~y~~~ei~nLlR~I~~~k 237 (1068)
||++| .++.++...|....
T Consensus 189 SA~~g-----~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 189 SARLH-----DNVHAVFQEAAEVA 207 (214)
T ss_dssp BTTTT-----BSHHHHHHHHHHHH
T ss_pred cCCCC-----CCHHHHHHHHHHHH
Confidence 99965 55666666654443
No 151
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.25 E-value=9.5e-12 Score=146.37 Aligned_cols=144 Identities=19% Similarity=0.195 Sum_probs=96.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCC--hh---------HHHHHHHh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPND--IN---------GMIDCAKF 140 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd--l~---------smld~akv 140 (1068)
...|+|+|+||||||||+|+|++.. +...+.+++..+. .+...+..++|+||||- .. .+...+..
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~ 303 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANT 303 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhc
Confidence 4679999999999999999999863 3344444443322 22335678999999992 21 12334578
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCc
Q 046721 141 ADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGK 220 (1068)
Q Consensus 141 ADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~ 220 (1068)
||++|+|+|++.++..+..+++..+.. .| +|+|+||+|+..... .. ....+....+++++||++|
T Consensus 304 aD~vl~VvD~s~~~~~~~~~i~~~l~~--~p-iivV~NK~Dl~~~~~-~~---------~~~~~~~~~~~i~iSAktg-- 368 (462)
T 3geh_A 304 ADLVLLTIDAATGWTTGDQEIYEQVKH--RP-LILVMNKIDLVEKQL-IT---------SLEYPENITQIVHTAAAQK-- 368 (462)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHTT--SC-EEEEEECTTSSCGGG-ST---------TCCCCTTCCCEEEEBTTTT--
T ss_pred CCEEEEEeccCCCCCHHHHHHHHhccC--Cc-EEEEEECCCCCcchh-hH---------HHHHhccCCcEEEEECCCC--
Confidence 999999999999888877777777643 56 899999999986321 11 1122235678999999965
Q ss_pred CCchhhcchHHHHHHhh
Q 046721 221 YTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 221 y~~~ei~nLlR~I~~~k 237 (1068)
.++..|...|....
T Consensus 369 ---~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 369 ---QGIDSLETAILEIV 382 (462)
T ss_dssp ---BSHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHH
Confidence 66777777765543
No 152
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.25 E-value=3.3e-11 Score=131.77 Aligned_cols=150 Identities=20% Similarity=0.312 Sum_probs=88.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccC--C-------CCcee-ccEEEE-e--CCCeeEEEEeCCCC---------h
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKL--K-------VPEVR-GPVTVV-S--GKKRRLQFVECPND---------I 131 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~--~-------~~tt~-~~Iti~-~--~~k~rl~fIDtPGd---------l 131 (1068)
+....|+|||.+|+|||||+|+|++..... . ..++. ...+.. . +...+++++||||- +
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 345789999999999999999998863211 1 11111 111111 1 12358999999993 2
Q ss_pred hHHH--------HHHHh-------------cCEEEEEEeCC-CCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHH
Q 046721 132 NGMI--------DCAKF-------------ADLALLLIDAS-HGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKL 189 (1068)
Q Consensus 132 ~sml--------d~akv-------------ADlVLlVIDas-~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l 189 (1068)
..+. ..+.. +|++|++|+++ .++......++..+.. ++| +|+|+||+|+... ..+
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~p-vi~V~nK~D~~~~-~e~ 162 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIAKADTLTP-EEC 162 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSC-EEEEESSGGGSCH-HHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCC-EEEEEeccCCCCH-HHH
Confidence 2222 11222 67888888665 5788888888888876 888 8999999999863 445
Q ss_pred HHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchHHHHH
Q 046721 190 RKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 190 ~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~ 234 (1068)
...++.+.+.+.. .+.++|.+||.++ .++..+...|.
T Consensus 163 ~~~~~~i~~~l~~---~~i~v~~~sa~~~-----~~~~~l~~~l~ 199 (274)
T 3t5d_A 163 QQFKKQIMKEIQE---HKIKIYEFPETDD-----EEENKLVKKIK 199 (274)
T ss_dssp HHHHHHHHHHHHH---TTCCCCCC----------------CHHHH
T ss_pred HHHHHHHHHHHHH---cCCeEEcCCCCCC-----hhHHHHHHHHh
Confidence 5555555444322 3567888898754 55556656553
No 153
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.24 E-value=1.3e-11 Score=127.57 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=92.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcccc-CCCCceeccEE--EEe-CCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTK-LKVPEVRGPVT--VVS-GKKRRLQFVECPND--INGM-IDCAKFADLALLLI 148 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~-~~~~tt~~~It--i~~-~~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVI 148 (1068)
+..|+|+|.+|+|||||+++|++.... ....++...+. +.. +....+.|+||||. +..+ ...+..+|++|||+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 104 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 104 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEE
Confidence 468999999999999999999986321 11122111111 222 23458999999994 3332 23467899999999
Q ss_pred eCCCCCchhH--HHHHHHHHhC--CCCcEEEEEeCCCcCCcHHHHHHHH---------HHHHHHhcccccCCCeEEEEec
Q 046721 149 DASHGFEMET--FEFLNLMQNH--GLPNVMGVLTHLDKFTDKKKLRKTK---------QHLKHRFGTELYHGAKLFKLSG 215 (1068)
Q Consensus 149 Das~g~e~~t--~eiL~~L~~~--GlP~vIvVLNKiDlvk~~k~l~~vk---------k~Lk~~~~~e~~~~~kVf~ISA 215 (1068)
|++....-.. ..++..+... ++| +|+|+||+|+.........+. ....... .. ....++|.+||
T Consensus 105 d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~-~~~~~~~~~SA 181 (201)
T 2gco_A 105 SIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMA-NR-ISAFGYLECSA 181 (201)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHH-HH-TTCSEEEECCT
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHH-Hh-CCCcEEEEeeC
Confidence 9986322222 2345555443 777 899999999986432211110 0111110 01 12337999999
Q ss_pred ccCCcCCchhhcchHHHHHH
Q 046721 216 LIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 216 l~g~~y~~~ei~nLlR~I~~ 235 (1068)
++| .++.++...|..
T Consensus 182 ~~g-----~gi~~l~~~i~~ 196 (201)
T 2gco_A 182 KTK-----EGVREVFEMATR 196 (201)
T ss_dssp TTC-----TTHHHHHHHHHH
T ss_pred CCC-----CCHHHHHHHHHH
Confidence 965 566667666644
No 154
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.24 E-value=3.6e-11 Score=128.29 Aligned_cols=110 Identities=16% Similarity=0.178 Sum_probs=70.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccC--CC--CceeccEE-EEeCCCeeEEEEeCCCCh----------hHHHHH-
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKL--KV--PEVRGPVT-VVSGKKRRLQFVECPNDI----------NGMIDC- 137 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~--~~--~tt~~~It-i~~~~k~rl~fIDtPGdl----------~smld~- 137 (1068)
..++.|+|||.+|+|||||+|+|++..... .+ .++..... .......+++||||||-. ..+...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 106 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCI 106 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence 346889999999999999999999974311 11 22222222 233456799999999932 123333
Q ss_pred ---HHhcCEEEEEEeCCCCCchhHHHHHHHHH-----hCCCCcEEEEEeCCCcCCc
Q 046721 138 ---AKFADLALLLIDASHGFEMETFEFLNLMQ-----NHGLPNVMGVLTHLDKFTD 185 (1068)
Q Consensus 138 ---akvADlVLlVIDas~g~e~~t~eiL~~L~-----~~GlP~vIvVLNKiDlvk~ 185 (1068)
+..+|++|+|+|++. ++......+..+. ..+.| +|+|+||+|++..
T Consensus 107 ~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~-~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSF-MILIFTRKDDLGD 160 (239)
T ss_dssp HHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGG-EEEEEECGGGC--
T ss_pred HhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccce-EEEEEeCCccCCc
Confidence 345699999999974 4444444444332 12345 8999999999753
No 155
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.24 E-value=1.7e-11 Score=127.43 Aligned_cols=155 Identities=15% Similarity=0.147 Sum_probs=92.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccC-CCCceeccEE--EEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVRGPVT--VVS-GKKRRLQFVECPND--ING-MIDCAKFADLALLLI 148 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~~~It--i~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVI 148 (1068)
+..|+|+|.+|||||||+++|++..... ...++...+. +.. +....+.|+||||. +.. ....+..+|++|||+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 104 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 104 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEE
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEE
Confidence 4689999999999999999999864221 1122111111 222 22468899999993 333 233568899999999
Q ss_pred eCCCCCc--hhHHHHHHHHHhC--CCCcEEEEEeCCCcCCcHHHHHHHHHHHH---------HHhcccccCCCeEEEEec
Q 046721 149 DASHGFE--METFEFLNLMQNH--GLPNVMGVLTHLDKFTDKKKLRKTKQHLK---------HRFGTELYHGAKLFKLSG 215 (1068)
Q Consensus 149 Das~g~e--~~t~eiL~~L~~~--GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk---------~~~~~e~~~~~kVf~ISA 215 (1068)
|++.... .....++..+... ++| +|+|+||+|+...... ......+. ..+... ....++|.+||
T Consensus 105 d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~SA 181 (207)
T 2fv8_A 105 SVDSPDSLENIPEKWVPEVKHFCPNVP-IILVANKKDLRSDEHV-RTELARMKQEPVRTDDGRAMAVR-IQAYDYLECSA 181 (207)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGGGCHHH-HHHHHHTTCCCCCHHHHHHHHHH-TTCSEEEECCT
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhhhccccc-hhhhhhcccCCCCHHHHHHHHHh-cCCCEEEEeeC
Confidence 9986422 2212345555443 777 8999999999764221 11111100 000001 12238999999
Q ss_pred ccCCcCCchhhcchHHHHHHhhc
Q 046721 216 LIQGKYTKKDIGNLAEFISVMKF 238 (1068)
Q Consensus 216 l~g~~y~~~ei~nLlR~I~~~k~ 238 (1068)
++| .++..+...|.....
T Consensus 182 ~~g-----~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 182 KTK-----EGVREVFETATRAAL 199 (207)
T ss_dssp TTC-----TTHHHHHHHHHHHHH
T ss_pred CCC-----CCHHHHHHHHHHHHH
Confidence 965 567777766655443
No 156
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.23 E-value=6.3e-11 Score=122.51 Aligned_cols=149 Identities=19% Similarity=0.217 Sum_probs=88.9
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccc--cCCCCceeccEE--E-EeCCCeeEEEEeCCCC--hhH-HHH-HHHhcCEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYT--KLKVPEVRGPVT--V-VSGKKRRLQFVECPND--ING-MID-CAKFADLAL 145 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~--~~~~~tt~~~It--i-~~~~k~rl~fIDtPGd--l~s-mld-~akvADlVL 145 (1068)
....|+|||.+|||||||+++|++... ...+.++...+. + +.+....+.|+||||. +.. +.. .+..||++|
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~i 101 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFL 101 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEE
Confidence 457899999999999999999986421 111111111111 2 2233567888999994 333 333 367899999
Q ss_pred EEEeCCCCCchh-HHHHHHHHHh----CCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCC
Q 046721 146 LLIDASHGFEME-TFEFLNLMQN----HGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQG 219 (1068)
Q Consensus 146 lVIDas~g~e~~-t~eiL~~L~~----~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~ 219 (1068)
||+|++....-. ....+..+.. .++| +|+|.||+|+..... ...... .+...+ +.++|.+||+++
T Consensus 102 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~-~~a~~~------~~~~~e~Sa~~~- 172 (195)
T 3cbq_A 102 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSREVSLEEGR-HLAGTL------SCKHIETSAALH- 172 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCTTTCCSCHHHHH-HHHHHT------TCEEEEEBTTTT-
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeechhccccCCcCHHHHH-HHHHHh------CCEEEEEcCCCC-
Confidence 999998532211 1123333332 3677 899999999974211 111222 122221 468999999965
Q ss_pred cCCchhhcchHHHHHHh
Q 046721 220 KYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 220 ~y~~~ei~nLlR~I~~~ 236 (1068)
..+..+...|...
T Consensus 173 ----~~v~~lf~~l~~~ 185 (195)
T 3cbq_A 173 ----HNTRELFEGAVRQ 185 (195)
T ss_dssp ----BSHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHH
Confidence 5566666555443
No 157
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.23 E-value=7.1e-11 Score=134.25 Aligned_cols=150 Identities=21% Similarity=0.318 Sum_probs=95.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc--cCCCCceeccEE-EEeCCCeeEEEEeCCCChh------------HHHHHH
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT--KLKVPEVRGPVT-VVSGKKRRLQFVECPNDIN------------GMIDCA 138 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~--~~~~~tt~~~It-i~~~~k~rl~fIDtPGdl~------------smld~a 138 (1068)
..+..|+|+|++|||||||+|+|++... ...+.++..... ........+.++||||-.. .+...+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 4567999999999999999999998742 222333332222 2223467899999999311 122233
Q ss_pred HhcCEEEEEEeCCCCC--chhH-HHHHHHHHh-C-CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEE
Q 046721 139 KFADLALLLIDASHGF--EMET-FEFLNLMQN-H-GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKL 213 (1068)
Q Consensus 139 kvADlVLlVIDas~g~--e~~t-~eiL~~L~~-~-GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~I 213 (1068)
..+|++|||+|++.+. +... ..++..+.. . +.| +|+|+||+|+... ..+......+.. .+.+++++
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~p-iilV~NK~Dl~~~-~~~~~~~~~~~~-------~~~~~~~i 315 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP-FLVVINKIDVADE-ENIKRLEKFVKE-------KGLNPIKI 315 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSC-EEEEECCTTTCCH-HHHHHHHHHHHH-------TTCCCEEC
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCC-EEEEEECcccCCh-HHHHHHHHHHHh-------cCCCeEEE
Confidence 5699999999987543 3332 344444433 2 777 8999999999863 333333332221 25678999
Q ss_pred ecccCCcCCchhhcchHHHHHHhh
Q 046721 214 SGLIQGKYTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 214 SAl~g~~y~~~ei~nLlR~I~~~k 237 (1068)
||++| .++..|...|+...
T Consensus 316 SA~~g-----~gi~~l~~~i~~~l 334 (357)
T 2e87_A 316 SALKG-----TGIDLVKEEIIKTL 334 (357)
T ss_dssp BTTTT-----BTHHHHHHHHHHHH
T ss_pred eCCCC-----cCHHHHHHHHHHHH
Confidence 99965 55666665554433
No 158
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.23 E-value=1.4e-11 Score=136.52 Aligned_cols=66 Identities=15% Similarity=0.280 Sum_probs=50.8
Q ss_pred CeeEEEEeCCCCh---------------hH-HHHHHHhcCEEEEEEeC-CCCCchhH-HHHHHHHHhCCCCcEEEEEeCC
Q 046721 119 KRRLQFVECPNDI---------------NG-MIDCAKFADLALLLIDA-SHGFEMET-FEFLNLMQNHGLPNVMGVLTHL 180 (1068)
Q Consensus 119 k~rl~fIDtPGdl---------------~s-mld~akvADlVLlVIDa-s~g~e~~t-~eiL~~L~~~GlP~vIvVLNKi 180 (1068)
..+++||||||-. .. +..++..||++|||+|+ +.++.... ..++..+...+.| +|+|+||+
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~-~i~v~NK~ 208 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKR-TIGVITKL 208 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSS-EEEEEECT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCc-EEEEEcCc
Confidence 4689999999932 12 45567899999999997 55665444 4788888778888 89999999
Q ss_pred CcCCc
Q 046721 181 DKFTD 185 (1068)
Q Consensus 181 Dlvk~ 185 (1068)
|+...
T Consensus 209 Dl~~~ 213 (315)
T 1jwy_B 209 DLMDK 213 (315)
T ss_dssp TSSCS
T ss_pred ccCCc
Confidence 99863
No 159
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.23 E-value=1.8e-11 Score=144.71 Aligned_cols=152 Identities=10% Similarity=0.043 Sum_probs=97.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCCCCceecc-EEEEeCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEEeCC
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGP-VTVVSGKKRRLQFVECPND--ING-MIDCAKFADLALLLIDAS 151 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~-Iti~~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVIDas 151 (1068)
...|+|||.+|||||||+|+|++........| .+. +..+......+.|+||||. +.. ....+..||++|||+|++
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~ 400 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPT-VGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCA 400 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCCCCCC-SSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETT
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCc-cceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECc
Confidence 37899999999999999999998753222222 222 2234456789999999993 444 344678899999999998
Q ss_pred CCC--chhHHHHHHHHHh---CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhh
Q 046721 152 HGF--EMETFEFLNLMQN---HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDI 226 (1068)
Q Consensus 152 ~g~--e~~t~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei 226 (1068)
... ......+..++.. .++| +|+|+||+|+.... ....+.+.+...+ ....+.++|.+||++| .++
T Consensus 401 ~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~SA~~g-----~gi 471 (497)
T 3lvq_E 401 DRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAM-KPHEIQEKLGLTR--IRDRNWYVQPSCATSG-----DGL 471 (497)
T ss_dssp CGGGHHHHHHHHHHHHTSGGGTTCE-EEEEEECCSSSSCC-CHHHHHHHTTCTT--CCSSCEEEEECBTTTT-----BTH
T ss_pred chhHHHHHHHHHHHHhhhhhcCCCc-EEEEEECCCCCcCC-CHHHHHHHhchhh--hhcCCeEEEEEECCCC-----CCH
Confidence 653 2222233344332 4777 89999999997521 1222222221111 1123557999999965 677
Q ss_pred cchHHHHHHhh
Q 046721 227 GNLAEFISVMK 237 (1068)
Q Consensus 227 ~nLlR~I~~~k 237 (1068)
..+...|....
T Consensus 472 ~~l~~~l~~~~ 482 (497)
T 3lvq_E 472 YEGLTWLTSNY 482 (497)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 77777775443
No 160
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.22 E-value=1.7e-11 Score=128.97 Aligned_cols=150 Identities=17% Similarity=0.160 Sum_probs=89.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccC-CCCceeccE---EEEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVRGPV---TVVS-GKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~~~I---ti~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
...|+|+|.+|||||||+++|++..... ...+....+ ++.. +....+.|+||||. +.. ....+..+|++|||
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV 92 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIV 92 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEE
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEE
Confidence 4789999999999999999999864221 111111111 1222 22468999999993 333 33456889999999
Q ss_pred EeCCCCCchhH-HHHHHHHHhC---CCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 148 IDASHGFEMET-FEFLNLMQNH---GLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 148 IDas~g~e~~t-~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
+|++.+..... ..++..+... ++| +|+|+||+|+..... ....... +... .+.++|.+||+++
T Consensus 93 ~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~-~~~~------~~~~~~~~Sa~~~---- 160 (223)
T 3cpj_B 93 YDISKSSSYENCNHWLSELRENADDNVA-VGLIGNKSDLAHLRAVPTEESKT-FAQE------NQLLFTETSALNS---- 160 (223)
T ss_dssp EC-CCHHHHHHHHHHHHHHHHHCC--CE-EEEEECCGGGGGGCCSCHHHHHH-HHHH------TTCEEEECCCC-C----
T ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccccCHHHHHH-HHHH------cCCEEEEEeCCCC----
Confidence 99986543222 1334444432 566 899999999974211 0112222 1111 2468999999865
Q ss_pred chhhcchHHHHHHhhc
Q 046721 223 KKDIGNLAEFISVMKF 238 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~k~ 238 (1068)
..+..+...|.....
T Consensus 161 -~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 161 -ENVDKAFEELINTIY 175 (223)
T ss_dssp -CCHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHH
Confidence 566677766655443
No 161
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.22 E-value=3.2e-11 Score=126.59 Aligned_cols=149 Identities=18% Similarity=0.208 Sum_probs=92.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc-cCCCCceeccEE--E-EeCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT-KLKVPEVRGPVT--V-VSGKKRRLQFVECPND--INGMI-DCAKFADLALLLI 148 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~-~~~~~tt~~~It--i-~~~~k~rl~fIDtPGd--l~sml-d~akvADlVLlVI 148 (1068)
...|+|+|.+|||||||+++|++... .....++...+. + .......+.|+||||. +..+. ..+..||++|||+
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 106 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCF 106 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEE
Confidence 47899999999999999999998632 222222222222 1 1234568999999993 33333 3467899999999
Q ss_pred eCCCCCchhH--HHHHHHHHhC--CCCcEEEEEeCCCcCCcHHH-------------HHHHHHHHHHHhcccccCCC-eE
Q 046721 149 DASHGFEMET--FEFLNLMQNH--GLPNVMGVLTHLDKFTDKKK-------------LRKTKQHLKHRFGTELYHGA-KL 210 (1068)
Q Consensus 149 Das~g~e~~t--~eiL~~L~~~--GlP~vIvVLNKiDlvk~~k~-------------l~~vkk~Lk~~~~~e~~~~~-kV 210 (1068)
|++....-.. ..++..+... ++| +|+|+||+|+..+... ..... .+...+ +. .+
T Consensus 107 d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~------~~~~~ 178 (214)
T 3q3j_B 107 DISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGC-AIAKQL------GAEIY 178 (214)
T ss_dssp ETTCTHHHHHHHTHHHHHHHHHCTTSE-EEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH-HHHHHH------TCSEE
T ss_pred ECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccchhhhhhhcccccCccCHHHHH-HHHHHc------CCCEE
Confidence 9986543322 2345555443 666 8999999999753111 11111 111121 44 89
Q ss_pred EEEecccCCcCCchh-hcchHHHHHHhh
Q 046721 211 FKLSGLIQGKYTKKD-IGNLAEFISVMK 237 (1068)
Q Consensus 211 f~ISAl~g~~y~~~e-i~nLlR~I~~~k 237 (1068)
|.+||++| .+ +..+...|....
T Consensus 179 ~e~SA~~g-----~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 179 LEGSAFTS-----EKSIHSIFRTASMLC 201 (214)
T ss_dssp EECCTTTC-----HHHHHHHHHHHHHHH
T ss_pred EEeccCCC-----cccHHHHHHHHHHHH
Confidence 99999865 54 677776665443
No 162
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.22 E-value=1.2e-11 Score=129.61 Aligned_cols=150 Identities=10% Similarity=0.133 Sum_probs=93.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHH-hccc---cCCCCceeccEEEE-eCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLI-KHYT---KLKVPEVRGPVTVV-SGKKRRLQFVECPND--ING-MIDCAKFADLAL 145 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~-~~~~---~~~~~tt~~~Iti~-~~~k~rl~fIDtPGd--l~s-mld~akvADlVL 145 (1068)
.....|+|+|.+|||||||+|+|+ +... ..++..+...+.+. ......+.|+||||. +.. ....+..+|++|
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 92 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI 92 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence 445789999999999999999954 4322 22333333333322 234678999999993 333 445678899999
Q ss_pred EEEeCCCCCchhH-HHHHHHHHh--CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 146 LLIDASHGFEMET-FEFLNLMQN--HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 146 lVIDas~g~e~~t-~eiL~~L~~--~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
||+|++.+..... ..++..+.. .++| +|+|+||+|+..... ........+. .+.++|.+||+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~-~~~~~~~~~~-------~~~~~~~~Sa~~~---- 159 (221)
T 3gj0_A 93 IMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKV-KAKSIVFHRK-------KNLQYYDISAKSN---- 159 (221)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEEECTTSSSCSS-CGGGCCHHHH-------HTCEEEECBGGGT----
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCccccccc-cHHHHHHHHH-------cCCEEEEEeCCCC----
Confidence 9999986433222 123333333 2677 899999999975211 1111111111 1568999999965
Q ss_pred chhhcchHHHHHHhh
Q 046721 223 KKDIGNLAEFISVMK 237 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~k 237 (1068)
.++..+...|....
T Consensus 160 -~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 160 -YNFEKPFLWLARKL 173 (221)
T ss_dssp -BTTTHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHH
Confidence 56777776665544
No 163
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.21 E-value=2.3e-11 Score=126.82 Aligned_cols=142 Identities=14% Similarity=0.211 Sum_probs=79.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhH-HHHHHHh----cCEEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--ING-MIDCAKF----ADLALL 146 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~s-mld~akv----ADlVLl 146 (1068)
..++.|+|+|++|+|||||+++|++.............++ .......+.|+||||. +.. +...+.. +|++||
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~ 88 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF 88 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE-TTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEE-EEeeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEE
Confidence 3467899999999999999999998743221111111111 1124568999999993 433 3333444 899999
Q ss_pred EEeCC---CCCchhHHHHHHHHHh------CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhccc-ccCCCeEEEEecc
Q 046721 147 LIDAS---HGFEMETFEFLNLMQN------HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTE-LYHGAKLFKLSGL 216 (1068)
Q Consensus 147 VIDas---~g~e~~t~eiL~~L~~------~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e-~~~~~kVf~ISAl 216 (1068)
|+|++ ..+......+..++.. .++| +|+|+||+|+.... .+..+.+.+...+... ...+..++.+||+
T Consensus 89 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~ 166 (218)
T 1nrj_B 89 MVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSELFTAR-PPSKIKDALESEIQKVIERRKKSLNEVERK 166 (218)
T ss_dssp EEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTSTTCC-CHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred EEECCCChHHHHHHHHHHHHHHhcccccccCCCC-EEEEEEchHhcccC-CHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 99998 3444333344444432 4777 89999999998532 1122222221111000 0013467888988
Q ss_pred cC
Q 046721 217 IQ 218 (1068)
Q Consensus 217 ~g 218 (1068)
++
T Consensus 167 ~~ 168 (218)
T 1nrj_B 167 IN 168 (218)
T ss_dssp --
T ss_pred cc
Confidence 65
No 164
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.18 E-value=1.1e-10 Score=118.72 Aligned_cols=152 Identities=17% Similarity=0.187 Sum_probs=90.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc-cCCCCceeccEE--EE-eCCCeeEEEEeCCCC--hhHH-HHHHHhcCEEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT-KLKVPEVRGPVT--VV-SGKKRRLQFVECPND--INGM-IDCAKFADLALL 146 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~-~~~~~tt~~~It--i~-~~~k~rl~fIDtPGd--l~sm-ld~akvADlVLl 146 (1068)
.....|+|+|.+|+|||||+++|++... .....+....++ +. ......+.|+||||. +..+ ...+..||++||
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 3457899999999999999999998632 111222211122 21 233568999999994 3333 234588999999
Q ss_pred EEeCCCCCchhH--HHHHHHHHh--CCCCcEEEEEeCCCcCCcHHHHHH------------HHHHHHHHhcccccCCCeE
Q 046721 147 LIDASHGFEMET--FEFLNLMQN--HGLPNVMGVLTHLDKFTDKKKLRK------------TKQHLKHRFGTELYHGAKL 210 (1068)
Q Consensus 147 VIDas~g~e~~t--~eiL~~L~~--~GlP~vIvVLNKiDlvk~~k~l~~------------vkk~Lk~~~~~e~~~~~kV 210 (1068)
|+|++....... ..++..+.. .+.| +|+|+||+|+..+...+.. ....+...+ ...++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~ 158 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI-----GAATY 158 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH-----TCSEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHc-----CCcEE
Confidence 999986432222 123344433 3566 8999999999753221111 011111111 24689
Q ss_pred EEEecccCCcCCchhhcchHHHHHH
Q 046721 211 FKLSGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 211 f~ISAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
|.+||++ ...++..+...|..
T Consensus 159 ~e~Sa~~----~~~gi~~l~~~i~~ 179 (184)
T 1m7b_A 159 IECSALQ----SENSVRDIFHVATL 179 (184)
T ss_dssp EECBTTT----BHHHHHHHHHHHHH
T ss_pred EEeeecC----CCcCHHHHHHHHHH
Confidence 9999973 12456666655543
No 165
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.18 E-value=2.9e-10 Score=126.66 Aligned_cols=141 Identities=11% Similarity=0.105 Sum_probs=86.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE--EEeCCCeeEEEEeCCCC--h-----hH-HHHHHHhcC
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT--VVSGKKRRLQFVECPND--I-----NG-MIDCAKFAD 142 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It--i~~~~k~rl~fIDtPGd--l-----~s-mld~akvAD 142 (1068)
...|+++|.+|||||||+|+|++.. +...+.+|.+... +.......+.++||||. + .. ....++.||
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad 82 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQ 82 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCC
Confidence 4689999999999999999998863 2223333333222 12234789999999994 3 22 334558899
Q ss_pred EEEEEEeCCCCCchhHH-HH---HHHHHh--CCCCcEEEEEeCCCcCCc--HHHHH-HHHHHHHHHhcccccCCCeEEEE
Q 046721 143 LALLLIDASHGFEMETF-EF---LNLMQN--HGLPNVMGVLTHLDKFTD--KKKLR-KTKQHLKHRFGTELYHGAKLFKL 213 (1068)
Q Consensus 143 lVLlVIDas~g~e~~t~-ei---L~~L~~--~GlP~vIvVLNKiDlvk~--~k~l~-~vkk~Lk~~~~~e~~~~~kVf~I 213 (1068)
++|+|+|++........ .+ +..+.. .++| +++|+||+|+... ...+. .....+.........+..++|.+
T Consensus 83 ~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~p-iilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t 161 (307)
T 3r7w_A 83 VLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK-IFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT 161 (307)
T ss_dssp EEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCe-EEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 99999999876433322 22 222222 2677 8999999999862 21111 11222222221111124789999
Q ss_pred eccc
Q 046721 214 SGLI 217 (1068)
Q Consensus 214 SAl~ 217 (1068)
||++
T Consensus 162 Sa~~ 165 (307)
T 3r7w_A 162 SIWD 165 (307)
T ss_dssp CTTS
T ss_pred eecC
Confidence 9974
No 166
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.17 E-value=4.3e-11 Score=137.08 Aligned_cols=104 Identities=20% Similarity=0.210 Sum_probs=79.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCCCeeEEEEeCCCC----------hhHHHHHHHhcCE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGKKRRLQFVECPND----------INGMIDCAKFADL 143 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd----------l~smld~akvADl 143 (1068)
..|+|||+||||||||+|+|++.. +...+.+|..++. ++.....+++|+||||- .+.++..++.||+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~ 152 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL 152 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence 479999999999999999999974 4556777777766 56667889999999992 2358889999999
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHhCC-----CCcEEEEEeCCCc
Q 046721 144 ALLLIDASHGFEMETFEFLNLMQNHG-----LPNVMGVLTHLDK 182 (1068)
Q Consensus 144 VLlVIDas~g~e~~t~eiL~~L~~~G-----lP~vIvVLNKiDl 182 (1068)
||+|+|++.++... ..+...|...+ .| .++|+||+|.
T Consensus 153 il~vvD~~~p~~~~-~~i~~EL~~~~~~l~~k~-~~i~~nK~d~ 194 (376)
T 4a9a_A 153 LFIILDVNKPLHHK-QIIEKELEGVGIRLNKTP-PDILIKKKEK 194 (376)
T ss_dssp EEEEEETTSHHHHH-HHHHHHHHHTTEEETCCC-CCEEEEECSS
T ss_pred cccccccCccHHHH-HHHHHHHHHhhHhhccCC-hhhhhhHhhh
Confidence 99999998754321 12333344433 35 5789999996
No 167
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.17 E-value=3.1e-10 Score=117.46 Aligned_cols=154 Identities=13% Similarity=0.181 Sum_probs=93.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEE---EEeCCCeeEEEEeCCCCh------------hHHHH--
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVT---VVSGKKRRLQFVECPNDI------------NGMID-- 136 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~It---i~~~~k~rl~fIDtPGdl------------~smld-- 136 (1068)
.+...|+|+|++|||||||+|+|++......+..+.+.+. ..... ..+.++||||.. ...+.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA-DGKRLVDLPGYGYAEVPEEMKRKWQRALGEY 102 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE-TTEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec-CCEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence 4457899999999999999999998741111111111111 11111 168899999941 22222
Q ss_pred --HHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 137 --CAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 137 --~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
....+|.+++|+|++.+.......++..+...++| +++|.||+|+.... +.......+...+ ........++++|
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~nK~D~~s~~-~~~~~~~~~~~~~-~~~~~~~~~~~~S 179 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIA-VLVLLTKADKLASG-ARKAQLNMVREAV-LAFNGDVQVETFS 179 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCHH-HHHHHHHHHHHHH-GGGCSCEEEEECB
T ss_pred HHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCC-eEEEEecccCCCch-hHHHHHHHHHHHH-HhcCCCCceEEEe
Confidence 22578999999999987765555677777778998 78899999998632 2222122333332 2222346788999
Q ss_pred cccCCcCCchhhcchHHHHHHh
Q 046721 215 GLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 215 Al~g~~y~~~ei~nLlR~I~~~ 236 (1068)
|+++ ..+..+...|...
T Consensus 180 al~~-----~~~~~l~~~l~~~ 196 (210)
T 1pui_A 180 SLKK-----QGVDKLRQKLDTW 196 (210)
T ss_dssp TTTT-----BSHHHHHHHHHHH
T ss_pred ecCC-----CCHHHHHHHHHHH
Confidence 9854 5556666666443
No 168
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.76 E-value=3.7e-12 Score=131.68 Aligned_cols=108 Identities=21% Similarity=0.225 Sum_probs=71.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE--E-EeCCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT--V-VSGKKRRLQFVECPND--ING-MIDCAKFADLALLLI 148 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It--i-~~~~k~rl~fIDtPGd--l~s-mld~akvADlVLlVI 148 (1068)
+..|+|+|.+|+|||||+++|++.. ......++...+. + ..+....+.|+||||. +.. ....+..||++|||+
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~ 109 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 109 (204)
Confidence 5789999999999999999998753 2222222221111 1 1223556779999993 434 334568899999999
Q ss_pred eCCCCCchhHH--HHHHHHHhC--CCCcEEEEEeCCCcCC
Q 046721 149 DASHGFEMETF--EFLNLMQNH--GLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 149 Das~g~e~~t~--eiL~~L~~~--GlP~vIvVLNKiDlvk 184 (1068)
|++.+...... .++..+... ++| +|+|+||+|+..
T Consensus 110 D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~ 148 (204)
T 3th5_A 110 SLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRD 148 (204)
Confidence 99865332222 344444444 677 899999999975
No 169
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.14 E-value=1.7e-12 Score=133.98 Aligned_cols=150 Identities=13% Similarity=0.136 Sum_probs=85.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCC-CCcee-c-cEE-EEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLK-VPEVR-G-PVT-VVS-GKKRRLQFVECPND--ING-MIDCAKFADLAL 145 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~-~~tt~-~-~It-i~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVL 145 (1068)
..+..|+|+|.+|||||||+|+|++...... ..++. . .+. +.. +....+.|+||||. +.. ....+..+|++|
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 3468899999999999999999987532111 11111 1 111 222 22468999999993 333 334568899999
Q ss_pred EEEeCCCCCchhH-HHHHHHHHhC---CCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcC
Q 046721 146 LLIDASHGFEMET-FEFLNLMQNH---GLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKY 221 (1068)
Q Consensus 146 lVIDas~g~e~~t-~eiL~~L~~~---GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y 221 (1068)
||+|++....-.. ...+..+... ++| +|+|+||+|+.............+...+ +.++|.+||+++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~v~~~~~~~~~~~~------~~~~~~vSA~~g--- 180 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVVDYTTAKEFADSL------GIPFLETSAKNA--- 180 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC-CCSE-EEEC-CCSSCC--CCCCSCC-CHHHHTT------TCCBCCCCC------
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccCCCC-EEEEEECccCCccccCCHHHHHHHHHHc------CCeEEEEECCCC---
Confidence 9999987543222 2344445443 566 8999999998742110000111111111 467899999854
Q ss_pred CchhhcchHHHHHH
Q 046721 222 TKKDIGNLAEFISV 235 (1068)
Q Consensus 222 ~~~ei~nLlR~I~~ 235 (1068)
..+.++...|..
T Consensus 181 --~gv~~l~~~l~~ 192 (199)
T 3l0i_B 181 --TNVEQSFMTMAA 192 (199)
T ss_dssp --HHHHHHHHHHTT
T ss_pred --CCHHHHHHHHHH
Confidence 666777666643
No 170
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.13 E-value=6.8e-11 Score=136.62 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=46.0
Q ss_pred EEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EE--e--------------------CC--CeeEEEEeCCCC
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VV--S--------------------GK--KRRLQFVECPND 130 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~--~--------------------~~--k~rl~fIDtPGd 130 (1068)
.|+|||.||||||||+|+|++.. ++..+.+|..++. +. . .. ..++.|+||||.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 68999999999999999999874 2334445443332 21 0 11 257999999994
Q ss_pred hh----------HHHHHHHhcCEEEEEEeCCCC
Q 046721 131 IN----------GMIDCAKFADLALLLIDASHG 153 (1068)
Q Consensus 131 l~----------smld~akvADlVLlVIDas~g 153 (1068)
.. ..+..++.||++|+|+|++.+
T Consensus 82 ~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 82 VPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp -------------CCCSSTTCSEEEEEEETTCC
T ss_pred ccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 21 123346899999999999875
No 171
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.12 E-value=2.2e-10 Score=119.55 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=90.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccC-CCCceeccEE--EE-eCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVRGPVT--VV-SGKKRRLQFVECPND--INGMI-DCAKFADLALLL 147 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~~~It--i~-~~~k~rl~fIDtPGd--l~sml-d~akvADlVLlV 147 (1068)
....|+|+|.+|||||||+++|++..... ...++...++ +. ......+.|+||||. +..+. ..+..||++|||
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 106 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 106 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEE
Confidence 35789999999999999999999863221 1222211122 22 233568999999993 33332 345889999999
Q ss_pred EeCCCCCchhH--HHHHHHHHh--CCCCcEEEEEeCCCcCCcHHHHHH------------HHHHHHHHhcccccCCCeEE
Q 046721 148 IDASHGFEMET--FEFLNLMQN--HGLPNVMGVLTHLDKFTDKKKLRK------------TKQHLKHRFGTELYHGAKLF 211 (1068)
Q Consensus 148 IDas~g~e~~t--~eiL~~L~~--~GlP~vIvVLNKiDlvk~~k~l~~------------vkk~Lk~~~~~e~~~~~kVf 211 (1068)
+|++....-.. ..++..+.. .++| +|+|+||+|+......+.. ....+...+ ....+|
T Consensus 107 ~D~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~~ 180 (205)
T 1gwn_A 107 FDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI-----GAATYI 180 (205)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH-----TCSEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc-----CCCEEE
Confidence 99986432222 123344443 3566 8999999999753221111 011111111 236899
Q ss_pred EEecccCCcCCchhhcchHHHHHH
Q 046721 212 KLSGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 212 ~ISAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
.+||+++ ..++..+...|..
T Consensus 181 e~SAk~~----~~gv~~lf~~l~~ 200 (205)
T 1gwn_A 181 ECSALQS----ENSVRDIFHVATL 200 (205)
T ss_dssp ECCTTTC----HHHHHHHHHHHHH
T ss_pred EeeeccC----CcCHHHHHHHHHH
Confidence 9999731 2456666655543
No 172
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.11 E-value=9.8e-11 Score=119.38 Aligned_cols=109 Identities=15% Similarity=0.248 Sum_probs=66.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC--hhH-HH----HHHHhcCEEEE
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND--ING-MI----DCAKFADLALL 146 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd--l~s-ml----d~akvADlVLl 146 (1068)
..+..|+|+|.+|+|||||+++|++........+....++. ......+.|+||||. +.. +. ..+..||++||
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~ 124 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF 124 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-eecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEE
Confidence 34578999999999999999999987422211111111111 124568999999993 222 22 23345999999
Q ss_pred EEeCCCCCc---hhHHHHHHHHHh------CCCCcEEEEEeCCCcCC
Q 046721 147 LIDASHGFE---METFEFLNLMQN------HGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 147 VIDas~g~e---~~t~eiL~~L~~------~GlP~vIvVLNKiDlvk 184 (1068)
|+|++.... .....+..++.. .++| +++|+||+|+..
T Consensus 125 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 170 (193)
T 2ged_A 125 MVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSELFT 170 (193)
T ss_dssp EEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTSTT
T ss_pred EEECCCCchhHHHHHHHHHHHHhhhhhccccCCC-EEEEEEchHhcC
Confidence 999982211 111223233321 3777 899999999985
No 173
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.11 E-value=2.4e-10 Score=126.52 Aligned_cols=155 Identities=19% Similarity=0.151 Sum_probs=94.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc-ccCCCCceeccEE--EEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY-TKLKVPEVRGPVT--VVS-GKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~-~~~~~~tt~~~It--i~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
.+..|+|+|.+|+|||||+++|++.. ......++...+. +.. +....+.|+||||. +.. ....++.||++|||
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 35789999999999999999999763 2333333332222 111 23456779999993 333 23346789999999
Q ss_pred EeCCCCCchhHH--HHHHHHHhC--CCCcEEEEEeCCCcCCcHHHHHHHH---------HHHHHHhcccccCCCeEEEEe
Q 046721 148 IDASHGFEMETF--EFLNLMQNH--GLPNVMGVLTHLDKFTDKKKLRKTK---------QHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 148 IDas~g~e~~t~--eiL~~L~~~--GlP~vIvVLNKiDlvk~~k~l~~vk---------k~Lk~~~~~e~~~~~kVf~IS 214 (1068)
+|++.+...... .++..+... ++| +|+|+||+|+........... ....... . .....++|++|
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-~~~~~~~~~~S 310 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA-K-EIGAVKYLECS 310 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTSC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH-H-HTTCSEEEECC
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhCCCCc-EEEEEEchhcccccchhhhccccccccccHHHHHHHH-H-HcCCcEEEEec
Confidence 999865433222 234444443 677 899999999975422111110 0011111 0 11224899999
Q ss_pred cccCCcCCchhhcchHHHHHHhh
Q 046721 215 GLIQGKYTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 215 Al~g~~y~~~ei~nLlR~I~~~k 237 (1068)
|++| .++..+...|....
T Consensus 311 a~~~-----~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 311 ALTQ-----RGLKTVFDEAIRAV 328 (332)
T ss_dssp TTTC-----TTHHHHHHHHHHHH
T ss_pred CCCC-----cCHHHHHHHHHHHH
Confidence 9965 56667766665443
No 174
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.09 E-value=9.3e-11 Score=133.08 Aligned_cols=151 Identities=18% Similarity=0.160 Sum_probs=91.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcccc--CCCCceeccE-----------------------------------------
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTK--LKVPEVRGPV----------------------------------------- 112 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~--~~~~tt~~~I----------------------------------------- 112 (1068)
.+.|+|||.+|+|||||+|+|++.... ....+++.+.
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 358999999999999999999986321 0000011110
Q ss_pred ------------EEEeCCCeeEEEEeCCCC---------------hhHHH-HHH-HhcCEEEEEEeCCCCCchhHH-HHH
Q 046721 113 ------------TVVSGKKRRLQFVECPND---------------INGMI-DCA-KFADLALLLIDASHGFEMETF-EFL 162 (1068)
Q Consensus 113 ------------ti~~~~k~rl~fIDtPGd---------------l~sml-d~a-kvADlVLlVIDas~g~e~~t~-eiL 162 (1068)
.+.......++||||||- +..++ ..+ ..+++||+|+|++.++..... .++
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~ 190 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA 190 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence 011112468999999992 12233 333 455788888999877776655 477
Q ss_pred HHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchHHHHHH
Q 046721 163 NLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 163 ~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
..+...|.| +|+|+||+|+......... .+.......-.....++++||+++ ..+..|...+..
T Consensus 191 ~~~~~~~~~-~i~V~NK~Dl~~~~~~~~~---~~~~~~~~l~~~~~~v~~~SA~~~-----~~i~~l~~~l~~ 254 (353)
T 2x2e_A 191 KEVDPQGQR-TIGVITKLDLMDEGTDARD---VLENKLLPLRRGYIGVVNRSQKDI-----DGKKDITAALAA 254 (353)
T ss_dssp HHHCTTCTT-EEEEEECGGGSCTTCCCHH---HHTTCSSCCTTCEEECCCCCHHHH-----HTTCCHHHHHHH
T ss_pred HHhCcCCCc-eEEEeccccccCcchhHHH---HHhCCcccccCCceEEEeCCcccc-----cccccHHHHHHH
Confidence 777777888 7999999999863221111 111111110012356888999854 555666655543
No 175
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.09 E-value=3.2e-10 Score=128.90 Aligned_cols=152 Identities=17% Similarity=0.156 Sum_probs=92.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccC---------CCCcee------------------ccEEEE-----------
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKL---------KVPEVR------------------GPVTVV----------- 115 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~---------~~~tt~------------------~~Iti~----------- 115 (1068)
+.+.+|+|+|+||+|||||+++|....... .+.++. ..+.+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 456899999999999999999998642110 000000 011111
Q ss_pred -----------eCCCeeEEEEeCCCChhHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC
Q 046721 116 -----------SGKKRRLQFVECPNDINGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 116 -----------~~~k~rl~fIDtPGdl~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk 184 (1068)
......++||||||--.+....+..||++|+|+|++.+...+... . ....+| +|+|+||+|+..
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~~~~~~aD~vl~V~d~~~~~~~~~l~--~--~~~~~p-~ivVlNK~Dl~~ 231 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQSEVAVANMVDTFVLLTLARTGDQLQGIK--K--GVLELA-DIVVVNKADGEH 231 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSSHHHHHHTTCSEEEEEEESSTTCTTTTCC--T--TSGGGC-SEEEEECCCGGG
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCcHHHHHHHhCCEEEEEECCCCCccHHHHH--H--hHhhcC-CEEEEECCCCcC
Confidence 113568999999995445555679999999999987654322111 1 012346 688999999975
Q ss_pred cHHHHHHHHHHHHHHhcccc----cCCCeEEEEecccCCcCCchhhcchHHHHHHh
Q 046721 185 DKKKLRKTKQHLKHRFGTEL----YHGAKLFKLSGLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 185 ~~k~l~~vkk~Lk~~~~~e~----~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~ 236 (1068)
..........+...+...- ..+.+|+++||++| .++..|...|...
T Consensus 232 -~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g-----~Gi~~L~~~i~~~ 281 (355)
T 3p32_A 232 -HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEG-----RGLAELWDTVERH 281 (355)
T ss_dssp -HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGT-----BSHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCC-----CCHHHHHHHHHHH
Confidence 2334444444444321111 11468999999965 5666666666443
No 176
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.09 E-value=1e-09 Score=111.84 Aligned_cols=151 Identities=17% Similarity=0.162 Sum_probs=84.8
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EE------eCCCeeEEEEeCCCC--hhHH-HHHHHhcCE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VV------SGKKRRLQFVECPND--INGM-IDCAKFADL 143 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~------~~~k~rl~fIDtPGd--l~sm-ld~akvADl 143 (1068)
..|+|+|.+|||||||+++|++.. ......+..-.+. .. ......+.++||||. +..+ -..+..+|+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRAL 82 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcE
Confidence 579999999999999999999852 2111222111111 11 123568899999992 3332 234577999
Q ss_pred EEEEEeCCCCCch--hHHHHHHHHHh--CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCC----eEEEEec
Q 046721 144 ALLLIDASHGFEM--ETFEFLNLMQN--HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGA----KLFKLSG 215 (1068)
Q Consensus 144 VLlVIDas~g~e~--~t~eiL~~L~~--~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~----kVf~ISA 215 (1068)
+++|+|.+.+... .....+..+.. .+.| +|+|.||+|+... .........+...+...+ +. .+|.+||
T Consensus 83 ~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa 158 (184)
T 2zej_A 83 YLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTHLDVSDE-KQRKACMSKITKELLNKR--GFPAIRDYHFVNA 158 (184)
T ss_dssp EEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCE-EEEEEECGGGCCH-HHHHHHHHHHHHHTTTCT--TSCEEEEEEECCT
T ss_pred EEEEEeCCcchhHHHHHHHHHHHHHhhCCCCc-EEEEEECCCcccc-hhhHHHHHHHHHHHHHhc--CCcchhheEEEec
Confidence 9999999875321 11123333332 3566 8889999999753 222222222222232222 23 3899999
Q ss_pred ccCCcCCchhhcchHHHHHH
Q 046721 216 LIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 216 l~g~~y~~~ei~nLlR~I~~ 235 (1068)
+++. ..+..|.+.|..
T Consensus 159 ~~~~----~~~~~l~~~i~~ 174 (184)
T 2zej_A 159 TEES----DALAKLRKTIIN 174 (184)
T ss_dssp TSCC----HHHHHHHHHHHH
T ss_pred ccCc----hhHHHHHHHHHH
Confidence 8651 355666655543
No 177
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.08 E-value=8e-10 Score=120.44 Aligned_cols=110 Identities=19% Similarity=0.152 Sum_probs=75.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccc---cCCCCceeccEEE-EeCCCeeEEEEeCCCC--hh----HHHHHH------
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYT---KLKVPEVRGPVTV-VSGKKRRLQFVECPND--IN----GMIDCA------ 138 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~---~~~~~tt~~~Iti-~~~~k~rl~fIDtPGd--l~----smld~a------ 138 (1068)
.+..|+|+|.+|+|||||+|+|++... .....++...+.+ .......++||||||. +. .++..+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD 117 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence 357899999999999999999998742 3333344333332 3345778999999993 21 233332
Q ss_pred HhcCEEEEEEeCCC-CCchhHHHHHHHHHhC-CC---CcEEEEEeCCCcCC
Q 046721 139 KFADLALLLIDASH-GFEMETFEFLNLMQNH-GL---PNVMGVLTHLDKFT 184 (1068)
Q Consensus 139 kvADlVLlVIDas~-g~e~~t~eiL~~L~~~-Gl---P~vIvVLNKiDlvk 184 (1068)
..+|++|||+|++. .+......++..+... |. .++|+|+||+|+..
T Consensus 118 ~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 118 KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp CEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred CCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 26999999988754 4655555666666543 42 24899999999975
No 178
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.08 E-value=1.8e-10 Score=141.95 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=97.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccc--cCCCCceecc------------------------------------------
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYT--KLKVPEVRGP------------------------------------------ 111 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~--~~~~~tt~~~------------------------------------------ 111 (1068)
.+.|+|||.+++|||||+|+|++... .....+|+.|
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 34899999999999999999999632 1111112211
Q ss_pred ---------EE--EEeCCCeeEEEEeCCCChh---------------HH-HHHH-HhcCEEEEEEeCCCCCchhHH-HHH
Q 046721 112 ---------VT--VVSGKKRRLQFVECPNDIN---------------GM-IDCA-KFADLALLLIDASHGFEMETF-EFL 162 (1068)
Q Consensus 112 ---------It--i~~~~k~rl~fIDtPGdl~---------------sm-ld~a-kvADlVLlVIDas~g~e~~t~-eiL 162 (1068)
+. +......+++||||||-.. .+ ...+ ..+|+||+|+|++.++..+.. .++
T Consensus 131 ~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll 210 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA 210 (772)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHH
T ss_pred CCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHH
Confidence 11 1222344799999999221 22 2333 578999999999998877766 788
Q ss_pred HHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCchhhcchHHHHHH
Q 046721 163 NLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 163 ~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
..+...|.| +|+|+||+|++.+......+. ...+.....+...|+++||+++ .++..|...|..
T Consensus 211 ~~L~~~g~p-vIlVlNKiDlv~~~~~~~~il---~~~~~~l~lg~~~VV~iSA~~G-----~GvdeL~eaI~~ 274 (772)
T 3zvr_A 211 KEVDPQGQR-TIGVITKLDLMDEGTDARDVL---ENKLLPLRRGYIGVVNRSQKDI-----DGKKDITAALAA 274 (772)
T ss_dssp HHHCTTCSS-EEEEEECTTSSCTTCCSHHHH---TTCSSCCSSCEEECCCCCCEES-----SSSEEHHHHHHH
T ss_pred HHHHhcCCC-EEEEEeCcccCCcchhhHHHH---HHHhhhhhccCCceEEeccccc-----ccchhHHHHHHH
Confidence 888888998 899999999986432211111 1111111124568899999965 455566655543
No 179
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.07 E-value=9.1e-10 Score=131.70 Aligned_cols=148 Identities=17% Similarity=0.203 Sum_probs=89.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccC-CCCceeccEE-E----------E-eCCCeeEEEEeCCCC--hhHH-HHHHH
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVRGPVT-V----------V-SGKKRRLQFVECPND--INGM-IDCAK 139 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~~~It-i----------~-~~~k~rl~fIDtPGd--l~sm-ld~ak 139 (1068)
...|++||.+|||||||+|+|++..... ...+....+. . . ......++++||||. +..+ ...+.
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~ 120 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMT 120 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHcc
Confidence 4789999999999999999999874211 1111111111 0 0 122578999999993 4432 33467
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhCC--CCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecc
Q 046721 140 FADLALLLIDASHGFEMETFEFLNLMQNHG--LPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGL 216 (1068)
Q Consensus 140 vADlVLlVIDas~g~e~~t~eiL~~L~~~G--lP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl 216 (1068)
.+|++|+|+|++.. .....++..+...+ .| +|+|+||+|+..... .... ++..+. . -+.++|.+||+
T Consensus 121 ~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~p-vilV~NK~Dl~~~~~v~~~~----~~~~~~-~--~~~~~~~vSA~ 190 (535)
T 3dpu_A 121 RSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSP-VIVVMNKIDENPSYNIEQKK----INERFP-A--IENRFHRISCK 190 (535)
T ss_dssp SSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCC-EEEEECCTTTCTTCCCCHHH----HHHHCG-G--GTTCEEECCC-
T ss_pred CCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCC-EEEEEECCCcccccccCHHH----HHHHHH-h--cCCceEEEecC
Confidence 89999999999754 33445666666654 77 899999999975221 1111 222221 1 14679999999
Q ss_pred cCCcCCchhhcchHHHHHHhhc
Q 046721 217 IQGKYTKKDIGNLAEFISVMKF 238 (1068)
Q Consensus 217 ~g~~y~~~ei~nLlR~I~~~k~ 238 (1068)
+| .++..|...|.....
T Consensus 191 ~g-----~gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 191 NG-----DGVESIAKSLKSAVL 207 (535)
T ss_dssp ---------CTTHHHHHHHHHT
T ss_pred cc-----cCHHHHHHHHHHHHh
Confidence 65 677778777765543
No 180
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.05 E-value=9.1e-10 Score=125.06 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=84.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc---------cCCCCcee------------------ccEEE-----------E
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT---------KLKVPEVR------------------GPVTV-----------V 115 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~---------~~~~~tt~------------------~~Iti-----------~ 115 (1068)
....+|+|+|+||||||||+|+|++... ...+.+.. ....+ .
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 4467899999999999999999997321 00011000 00000 0
Q ss_pred -----------eCCCeeEEEEeCCCChhHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC
Q 046721 116 -----------SGKKRRLQFVECPNDINGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 116 -----------~~~k~rl~fIDtPGdl~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk 184 (1068)
......++|+||||-...-......+|++|+|+|++.+...+. +.. .....| .++|+||+|+..
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~~~l~~~~d~vl~V~d~~~~~~~~~--i~~--~il~~~-~ivVlNK~Dl~~ 226 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQSEFAVADMVDMFVLLLPPAGGDELQG--IKR--GIIEMA-DLVAVTKSDGDL 226 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--CHHHHHTTCSEEEEEECCC----------------CCSC-SEEEECCCSGGG
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchhhhhHHhhCCEEEEEEcCCcchhHHH--hHH--HHHhcC-CEEEEeeecCCC
Confidence 0135688999999943334455689999999999987643221 111 113557 578999999975
Q ss_pred cHHHHHHHHHHHHHHhcccc----cCCCeEEEEecccCCcCCchhhcchHHHHHH
Q 046721 185 DKKKLRKTKQHLKHRFGTEL----YHGAKLFKLSGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 185 ~~k~l~~vkk~Lk~~~~~e~----~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
. .........+...+.... ....+++++||+++ .++..|...|..
T Consensus 227 ~-~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g-----~Gi~~L~~~I~~ 275 (349)
T 2www_A 227 I-VPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSG-----EGISEMWDKMKD 275 (349)
T ss_dssp H-HHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTC-----TTHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCC-----CCHHHHHHHHHH
Confidence 2 222223333332221111 12468999999965 555566555543
No 181
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.04 E-value=1.1e-09 Score=115.75 Aligned_cols=148 Identities=18% Similarity=0.173 Sum_probs=85.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceecc--EEE-EeCCCeeEEEEeCCCChh--HHHHH--HHhcCEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGP--VTV-VSGKKRRLQFVECPNDIN--GMIDC--AKFADLAL 145 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~--Iti-~~~~k~rl~fIDtPGdl~--smld~--akvADlVL 145 (1068)
...|+|||.+|||||||+|+|++.. ......+.... .++ +.+....+.++||+|.-. ..+.. ...+|++|
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~i 116 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYL 116 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEE
Confidence 4789999999999999999999642 22111111111 112 223345778899998432 22222 36789999
Q ss_pred EEEeCCCCCchhH-HHHHHHHHh----CCCCcEEEEEeCCCcCCcHHH-HHHHHHHHHHHhcccccCCCeEEEEecccCC
Q 046721 146 LLIDASHGFEMET-FEFLNLMQN----HGLPNVMGVLTHLDKFTDKKK-LRKTKQHLKHRFGTELYHGAKLFKLSGLIQG 219 (1068)
Q Consensus 146 lVIDas~g~e~~t-~eiL~~L~~----~GlP~vIvVLNKiDlvk~~k~-l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~ 219 (1068)
+|+|.+..-.-+. ...+..+.. .++| +|+|.||+|+...... .... ..+...+ +.++|.+||++|
T Consensus 117 lVydvt~~~sf~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~r~v~~~e~-~~~a~~~------~~~~~e~SAk~g- 187 (211)
T 2g3y_A 117 IVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRCREVSVSEG-RACAVVF------DCKFIETSAAVQ- 187 (211)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTSGGGTTSC-EEEEEECTTCGGGCCSCHHHH-HHHHHHH------TCEEEECBTTTT-
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEChHHhcCceEeHHHH-HHHHHHc------CCEEEEEeCCCC-
Confidence 9999875321111 122333332 3677 8999999999642110 1111 1111111 468999999965
Q ss_pred cCCchhhcchHHHHHHh
Q 046721 220 KYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 220 ~y~~~ei~nLlR~I~~~ 236 (1068)
..+..+...|...
T Consensus 188 ----~~v~elf~~l~~~ 200 (211)
T 2g3y_A 188 ----HNVKELFEGIVRQ 200 (211)
T ss_dssp ----BSHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHH
Confidence 5566666555443
No 182
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.04 E-value=1.3e-09 Score=115.68 Aligned_cols=148 Identities=13% Similarity=0.214 Sum_probs=88.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhc-cccCCCCceecc-E--EE-EeCCCeeEEEEeCCC--ChhHHH-HHHHhcCEEEEEE
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH-YTKLKVPEVRGP-V--TV-VSGKKRRLQFVECPN--DINGMI-DCAKFADLALLLI 148 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~-~~~~~~~tt~~~-I--ti-~~~~k~rl~fIDtPG--dl~sml-d~akvADlVLlVI 148 (1068)
..|+|||.++||||||+++++.. +......|.... . ++ ......++.|+||+| .+.++. ...+.||++|+|+
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~ 93 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVY 93 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEE
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEe
Confidence 47999999999999999999875 322222222111 1 12 123456889999999 455544 4568999999999
Q ss_pred eCCCCCchhH-HHHHHHHH---hCCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcCCc
Q 046721 149 DASHGFEMET-FEFLNLMQ---NHGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYTK 223 (1068)
Q Consensus 149 Das~g~e~~t-~eiL~~L~---~~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~~ 223 (1068)
|.+..-.-+. ...+..+. ..++| +|+|.||+|+..... ...+..+ +...+ ++.+|.+||++|
T Consensus 94 di~~~~Sf~~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~~~r~V~~~e~~~-~a~~~------~~~~~e~SAktg----- 160 (216)
T 4dkx_A 94 DITNVNSFQQTTKWIDDVRTERGSDVI-IMLVGNKTDLADKRQVSIEEGER-KAKEL------NVMFIETSAKAG----- 160 (216)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECTTCGGGCCSCHHHHHH-HHHHH------TCEEEEEBTTTT-----
T ss_pred ecchhHHHHHHHHHHHHHHHhcCCCCe-EEEEeeccchHhcCcccHHHHhh-HHHHh------CCeeEEEeCCCC-----
Confidence 9975322111 12222222 24566 899999999864211 1112222 22222 567899999965
Q ss_pred hhhcchHHHHHHhh
Q 046721 224 KDIGNLAEFISVMK 237 (1068)
Q Consensus 224 ~ei~nLlR~I~~~k 237 (1068)
..+.++...|+...
T Consensus 161 ~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 161 YNVKQLFRRVAAAL 174 (216)
T ss_dssp BSHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHH
Confidence 55666666665443
No 183
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.01 E-value=1.4e-09 Score=112.03 Aligned_cols=147 Identities=18% Similarity=0.200 Sum_probs=82.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccE--EE-EeCCCeeEEEEeCCCCh---hHHH-HHHHhcCEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPV--TV-VSGKKRRLQFVECPNDI---NGMI-DCAKFADLAL 145 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~I--ti-~~~~k~rl~fIDtPGdl---~sml-d~akvADlVL 145 (1068)
...|+|||.+|||||||+|+|++.. ......++...+ ++ +.+....+.++||+|.- ..+. .....+|++|
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i 85 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYL 85 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEE
Confidence 4689999999999999999999642 221111111111 12 22334567889999832 1122 2346799999
Q ss_pred EEEeCCCCCchhH-HHHHHHHH----hCCCCcEEEEEeCCCcCCcHHH-HHHHHHHHHHHhcccccCCCeEEEEecccCC
Q 046721 146 LLIDASHGFEMET-FEFLNLMQ----NHGLPNVMGVLTHLDKFTDKKK-LRKTKQHLKHRFGTELYHGAKLFKLSGLIQG 219 (1068)
Q Consensus 146 lVIDas~g~e~~t-~eiL~~L~----~~GlP~vIvVLNKiDlvk~~k~-l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~ 219 (1068)
+|+|.+..-.-+. ..++..+. ..++| +|+|.||+|+...... .... ..+... .+.++|.+||++|
T Consensus 86 ~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~r~v~~~~~-~~~a~~------~~~~~~e~SA~~g- 156 (192)
T 2cjw_A 86 IVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRXREVSVSEG-RAXAVV------FDXKFIETSAAVQ- 156 (192)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECTTCGGGCCSCHHHH-HHHHHH------TTCEEEECBTTTT-
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCCCCCe-EEEEEechhhhccccccHHHH-HHHHHH------hCCceEEeccccC-
Confidence 9999975321111 12222222 23677 8999999998642110 1111 111111 2468899999965
Q ss_pred cCCchhhcchHHHHHH
Q 046721 220 KYTKKDIGNLAEFISV 235 (1068)
Q Consensus 220 ~y~~~ei~nLlR~I~~ 235 (1068)
..+..+...|..
T Consensus 157 ----~~v~~lf~~l~~ 168 (192)
T 2cjw_A 157 ----HNVKELFEGIVR 168 (192)
T ss_dssp ----BSHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHH
Confidence 455555544443
No 184
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.01 E-value=2.8e-09 Score=115.73 Aligned_cols=109 Identities=19% Similarity=0.155 Sum_probs=74.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCCCeeEEEEeCCCC--hh----HHHHHHH-----
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGKKRRLQFVECPND--IN----GMIDCAK----- 139 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~k~rl~fIDtPGd--l~----smld~ak----- 139 (1068)
.+..|+|+|++|+|||||+|+|++.. +.....++..... .....+..++|+||||. +. ..+..+.
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~ 114 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVN 114 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhc
Confidence 46899999999999999999999874 2233333333333 23345779999999993 21 2333333
Q ss_pred -hcCEEEEEEeCCC-CCchhHHHHHHHHHhC-C---CCcEEEEEeCCCcC
Q 046721 140 -FADLALLLIDASH-GFEMETFEFLNLMQNH-G---LPNVMGVLTHLDKF 183 (1068)
Q Consensus 140 -vADlVLlVIDas~-g~e~~t~eiL~~L~~~-G---lP~vIvVLNKiDlv 183 (1068)
.+|++|||+|++. .+......++..+... | ..++|+|+||+|+.
T Consensus 115 ~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 115 RTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp CEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred CCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 7899999987753 4555555666666543 3 12489999999986
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.00 E-value=3.8e-10 Score=128.24 Aligned_cols=133 Identities=15% Similarity=0.225 Sum_probs=82.4
Q ss_pred EEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccE-------------------------------------------
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPV------------------------------------------- 112 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~I------------------------------------------- 112 (1068)
.|+|||.+|+|||||+|+|++.. .......++.++
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRET 115 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHhc
Confidence 89999999999999999999953 111111111111
Q ss_pred -----------E--EEeCCCeeEEEEeCCC--Ch-------------hH-HHHHHHhcCEEEEEEeCCC-CC-chhHHHH
Q 046721 113 -----------T--VVSGKKRRLQFVECPN--DI-------------NG-MIDCAKFADLALLLIDASH-GF-EMETFEF 161 (1068)
Q Consensus 113 -----------t--i~~~~k~rl~fIDtPG--dl-------------~s-mld~akvADlVLlVIDas~-g~-e~~t~ei 161 (1068)
. +.......++|||||| .. .. +..++..+|+||||+|++. .. ......+
T Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l 195 (360)
T 3t34_A 116 GRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195 (360)
T ss_dssp CTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHH
T ss_pred CCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHH
Confidence 1 1122245799999999 22 22 4456789999999998753 22 2233456
Q ss_pred HHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEeccc
Q 046721 162 LNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLI 217 (1068)
Q Consensus 162 L~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~ 217 (1068)
+..+...|.| +|+|+||+|++.+...... .+... ...-+..++.+|+..
T Consensus 196 ~~~~~~~~~~-~i~V~nK~Dl~~~~~~~~~---~~~~~---~~~~~~~~~~v~~~s 244 (360)
T 3t34_A 196 SREVDPSGDR-TFGVLTKIDLMDKGTDAVE---ILEGR---SFKLKYPWVGVVNRS 244 (360)
T ss_dssp HHHSCTTCTT-EEEEEECGGGCCTTCCSHH---HHTTS---SSCCSSCCEEECCCC
T ss_pred HHHhcccCCC-EEEEEeCCccCCCcccHHH---HHcCc---cccccCCeEEEEECC
Confidence 6666667888 8999999999864322111 11111 122345677888764
No 186
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.98 E-value=1.1e-09 Score=123.80 Aligned_cols=151 Identities=13% Similarity=0.089 Sum_probs=87.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc---------cCCCCcee--------------------ccEEEE---------
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT---------KLKVPEVR--------------------GPVTVV--------- 115 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~---------~~~~~tt~--------------------~~Iti~--------- 115 (1068)
....+|+|+|++|+|||||+|.|++... ...+.++. +.++-.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 4467899999999999999999976321 01111110 001000
Q ss_pred -----------eCCCeeEEEEeCCCChhHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC
Q 046721 116 -----------SGKKRRLQFVECPNDINGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 116 -----------~~~k~rl~fIDtPGdl~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk 184 (1068)
...+..++||||||-..........||++|+|+|++.+...+.. .. ...++| +++|+||+|+..
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~aD~vl~Vvd~~~~~~~~~l---~~-~~~~~p-~ivv~NK~Dl~~ 208 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGI---KK-GLMEVA-DLIVINKDDGDN 208 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHHHTTCSEEEEEECC------CCC---CH-HHHHHC-SEEEECCCCTTC
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchHHHHHHhCCEEEEEEeCCccHHHHHH---HH-hhhccc-CEEEEECCCCCC
Confidence 02356899999999544433456899999999999755321111 10 112457 588999999975
Q ss_pred cHHHHHHHHHHHHHHhccccc--C--CCeEEEEecccCCcCCchhhcchHHHHHH
Q 046721 185 DKKKLRKTKQHLKHRFGTELY--H--GAKLFKLSGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 185 ~~k~l~~vkk~Lk~~~~~e~~--~--~~kVf~ISAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
. ..+......++..+...-. . ..+++++||++| .++..|...|..
T Consensus 209 ~-~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g-----~gi~~L~~~l~~ 257 (341)
T 2p67_A 209 H-TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEK-----RGIDEIWHAIID 257 (341)
T ss_dssp H-HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGT-----BSHHHHHHHHHH
T ss_pred h-HHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCC-----CCHHHHHHHHHH
Confidence 3 2344444444433211000 1 457999999865 556666666643
No 187
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.92 E-value=7e-09 Score=120.43 Aligned_cols=147 Identities=18% Similarity=0.219 Sum_probs=91.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc--cCCCCceeccE-EEEeCC-CeeEEEEeCCCCh---------h-HHHHHHHhcC
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT--KLKVPEVRGPV-TVVSGK-KRRLQFVECPNDI---------N-GMIDCAKFAD 142 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~--~~~~~tt~~~I-ti~~~~-k~rl~fIDtPGdl---------~-smld~akvAD 142 (1068)
..|+|||++|||||||+++|++... .....++..+. .++... ...++++|+||.+ . ..+..+..+|
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 3689999999999999999998732 22222222222 233333 4789999999942 1 2456667899
Q ss_pred EEEEEEeCC-CCCchhH---HHHHHHHHh-CCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEeccc
Q 046721 143 LALLLIDAS-HGFEMET---FEFLNLMQN-HGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSGLI 217 (1068)
Q Consensus 143 lVLlVIDas-~g~e~~t---~eiL~~L~~-~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~ 217 (1068)
.+|+|+|++ ..+.... .+++.+..+ ...| .|+|+||+|+... ..+..+.+.+.. .+..+|.+||++
T Consensus 238 ~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P-~ILVlNKlDl~~~-~~~~~l~~~l~~-------~g~~vi~iSA~~ 308 (416)
T 1udx_A 238 VLLYVLDAADEPLKTLETLRKEVGAYDPALLRRP-SLVALNKVDLLEE-EAVKALADALAR-------EGLAVLPVSALT 308 (416)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSC-EEEEEECCTTSCH-HHHHHHHHHHHT-------TTSCEEECCTTT
T ss_pred hhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCC-EEEEEECCChhhH-HHHHHHHHHHHh-------cCCeEEEEECCC
Confidence 999999997 2221110 122222111 2467 6788899999763 333333332211 256899999985
Q ss_pred CCcCCchhhcchHHHHHHhh
Q 046721 218 QGKYTKKDIGNLAEFISVMK 237 (1068)
Q Consensus 218 g~~y~~~ei~nLlR~I~~~k 237 (1068)
+ .++..|+..|....
T Consensus 309 g-----~gi~eL~~~i~~~l 323 (416)
T 1udx_A 309 G-----AGLPALKEALHALV 323 (416)
T ss_dssp C-----TTHHHHHHHHHHHH
T ss_pred c-----cCHHHHHHHHHHHH
Confidence 4 66777777665544
No 188
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.92 E-value=2.2e-09 Score=122.52 Aligned_cols=139 Identities=21% Similarity=0.326 Sum_probs=77.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcccc--CCC--------Ccee-ccEEEE-eCC--CeeEEEEeCCCC---------
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTK--LKV--------PEVR-GPVTVV-SGK--KRRLQFVECPND--------- 130 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~--~~~--------~tt~-~~Iti~-~~~--k~rl~fIDtPGd--------- 130 (1068)
+.+..|+|||++|+|||||+|+|++.... ... .+.. ..+++. ... ...++++||||.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 44578999999999999999999875211 110 1111 011111 112 347999999983
Q ss_pred hhHHHH--------HHHh-------------cCEEEEEEeC-CCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHH
Q 046721 131 INGMID--------CAKF-------------ADLALLLIDA-SHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKK 188 (1068)
Q Consensus 131 l~smld--------~akv-------------ADlVLlVIDa-s~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~ 188 (1068)
+..+.+ .+.. +|++||+|++ ..++......++..+. .++| +|+|+||+|+... ..
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~p-iIlV~NK~Dl~~~-~e 191 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVN-IVPVIAKADTLTL-KE 191 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SC-EEEEEECCSSSCH-HH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCC-EEEEEECCCCCCH-HH
Confidence 122222 1221 2568888886 5677776667777663 5777 8999999999863 34
Q ss_pred HHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 189 LRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 189 l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
+...+..+...+.. .+.++|++||+.+
T Consensus 192 v~~~k~~i~~~~~~---~~i~~~~~Sa~~~ 218 (361)
T 2qag_A 192 RERLKKRILDEIEE---HNIKIYHLPDAES 218 (361)
T ss_dssp HHHHHHHHHHHTTC---C-CCSCCCC----
T ss_pred HHHHHHHHHHHHHH---CCCCEEeCCCcCC
Confidence 44444445444322 2568899999876
No 189
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.89 E-value=5.9e-09 Score=107.46 Aligned_cols=148 Identities=17% Similarity=0.183 Sum_probs=85.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccC-CCCce--e-ccEEEEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEV--R-GPVTVVS-GKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt--~-~~Iti~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
...|+|+|++|||||||+++|++..... ...+. . ....+.. +....+.|+||||. +.. .......+|++|+|
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 84 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV 84 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEE
Confidence 4689999999999999999999873211 11110 0 0111222 23457888999993 222 23345789999999
Q ss_pred EeCCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 148 IDASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 148 IDas~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
+|++....... ..++..+.. .+.| +++|+||+|+..... ...... .+... ++..++.+||+++
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~~~~~~~~a~-~l~~~------~~~~~~d~Sal~~---- 152 (199)
T 2f9l_A 85 YDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVPTDEAR-AFAEK------NNLSFIETSALDS---- 152 (199)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCHHHHH-HHHHH------TTCEEEECCTTTC----
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccCcCHHHHH-HHHHH------cCCeEEEEeCCCC----
Confidence 99875433221 123333332 3455 899999999864211 011111 11111 3567888999865
Q ss_pred chhhcchHHHHHHh
Q 046721 223 KKDIGNLAEFISVM 236 (1068)
Q Consensus 223 ~~ei~nLlR~I~~~ 236 (1068)
..+..+...|...
T Consensus 153 -~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 153 -TNVEEAFKNILTE 165 (199)
T ss_dssp -TTHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHH
Confidence 4555555555433
No 190
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.84 E-value=7.5e-09 Score=111.99 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=48.6
Q ss_pred hcCEEEEEEeCCCC--CchhH-HHHHHHH----HhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEE
Q 046721 140 FADLALLLIDASHG--FEMET-FEFLNLM----QNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFK 212 (1068)
Q Consensus 140 vADlVLlVIDas~g--~e~~t-~eiL~~L----~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ 212 (1068)
.||++|||+|++.. ..-+. ...+..+ ...++| +|+|+||+|+... ..+.... ..... ..+.++|.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~~-~~v~~~~----~~~~~--~~~~~~~e 233 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKP-IVVVLTKCDEGVE-RYIRDAH----TFALS--KKNLQVVE 233 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCC-EEEEEECGGGBCH-HHHHHHH----HHHHT--SSSCCEEE
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCC-EEEEEEccccccc-HHHHHHH----HHHHh--cCCCeEEE
Confidence 58999999999865 22211 1222222 235777 8999999999753 2232222 21111 12568999
Q ss_pred EecccCCcCCchhhcchHHHHHH
Q 046721 213 LSGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 213 ISAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
+||+++ ..+..+...|..
T Consensus 234 ~SAk~g-----~gv~elf~~l~~ 251 (255)
T 3c5h_A 234 TSARSN-----VNVDLAFSTLVQ 251 (255)
T ss_dssp CBTTTT-----BSHHHHHHHHHH
T ss_pred EECCCC-----CCHHHHHHHHHH
Confidence 999965 556666655543
No 191
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.82 E-value=2.5e-08 Score=112.68 Aligned_cols=152 Identities=18% Similarity=0.153 Sum_probs=85.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc---------cCCCCcee------------------ccEEEE-----------
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT---------KLKVPEVR------------------GPVTVV----------- 115 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~---------~~~~~tt~------------------~~Iti~----------- 115 (1068)
.+..+|+|+|+||+|||||+|+|++... ...+.++. ....+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4467999999999999999999986310 00111000 001111
Q ss_pred -----------eCCCeeEEEEeCCCChhHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC
Q 046721 116 -----------SGKKRRLQFVECPNDINGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 116 -----------~~~k~rl~fIDtPGdl~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk 184 (1068)
......++||||||-...-......+|++++|+|++.+.+.+ .+...+ ..++ .++|+||+|+..
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~--~i~~~i--~~~~-~ivvlNK~Dl~~ 207 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQ--GIKKGI--FELA-DMIAVNKADDGD 207 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC--------CCTTH--HHHC-SEEEEECCSTTC
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHH--HHHHHH--hccc-cEEEEEchhccC
Confidence 013668999999995444344568999999999986442211 010000 1235 466789999865
Q ss_pred cHHHHHHHHHHHHHHhccccc----CCCeEEEEecccCCcCCchhhcchHHHHHH
Q 046721 185 DKKKLRKTKQHLKHRFGTELY----HGAKLFKLSGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 185 ~~k~l~~vkk~Lk~~~~~e~~----~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
.........+.+...+....+ ...+++++||+++ ..+..|...|..
T Consensus 208 ~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g-----~gi~~L~~~I~~ 257 (337)
T 2qm8_A 208 GERRASAAASEYRAALHILTPPSATWTPPVVTISGLHG-----KGLDSLWSRIED 257 (337)
T ss_dssp CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTT-----BSHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCC-----CCHHHHHHHHHH
Confidence 333333333444332211010 1468999999965 555556555543
No 192
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.79 E-value=3.9e-08 Score=105.54 Aligned_cols=109 Identities=12% Similarity=0.237 Sum_probs=65.5
Q ss_pred eeEEEEeCCCChhH---------HHHHHHhcCEEEEEEeCCCCCchhHHH-----HHHHHHhCCCCcEEEEEeCCCcCCc
Q 046721 120 RRLQFVECPNDING---------MIDCAKFADLALLLIDASHGFEMETFE-----FLNLMQNHGLPNVMGVLTHLDKFTD 185 (1068)
Q Consensus 120 ~rl~fIDtPGdl~s---------mld~akvADlVLlVIDas~g~e~~t~e-----iL~~L~~~GlP~vIvVLNKiDlvk~ 185 (1068)
..++||||||.... ++..+.. +++|+|+|++......... .+......++| +++|+||+|+...
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGAT-TIPALNKVDLLSE 186 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSC-EEEEECCGGGCCH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCC-eEEEEeccccccc
Confidence 47999999995432 2234455 8999999997665544432 12223345788 7899999999763
Q ss_pred HHHHHHHHHHHH------HHh-----------------cccccCCCeEEEEecccCCcCCchhhcchHHHHHHh
Q 046721 186 KKKLRKTKQHLK------HRF-----------------GTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 186 ~k~l~~vkk~Lk------~~~-----------------~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~ 236 (1068)
. ....+.+.++ ..+ ...+....+++++||+++ .++..|...|...
T Consensus 187 ~-~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~-----~gi~~l~~~i~~~ 254 (262)
T 1yrb_A 187 E-EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTR-----EGFEDLETLAYEH 254 (262)
T ss_dssp H-HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTC-----TTHHHHHHHHHHH
T ss_pred c-cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCc-----ccHHHHHHHHHHH
Confidence 2 2222222111 111 123334558899999865 6667777666544
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.79 E-value=2.5e-08 Score=113.72 Aligned_cols=76 Identities=22% Similarity=0.221 Sum_probs=53.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCCC-----------------eeEEEEeCCCCh-----
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGKK-----------------RRLQFVECPNDI----- 131 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~k-----------------~rl~fIDtPGdl----- 131 (1068)
..|+|||+||||||||+|+|++.. +...+.+|..+.. .+..+. ..++|+||||..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 479999999999999999999864 2223333333221 222221 479999999932
Q ss_pred -----hHHHHHHHhcCEEEEEEeCCC
Q 046721 132 -----NGMIDCAKFADLALLLIDASH 152 (1068)
Q Consensus 132 -----~smld~akvADlVLlVIDas~ 152 (1068)
+..+..++.||++|+|+|++.
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 136778899999999999985
No 194
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.79 E-value=2.1e-08 Score=102.96 Aligned_cols=146 Identities=18% Similarity=0.191 Sum_probs=84.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccC-CCCcee---ccEEEEe-CCCeeEEEEeCCCC--hhH-HHHHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKL-KVPEVR---GPVTVVS-GKKRRLQFVECPND--ING-MIDCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~-~~~tt~---~~Iti~~-~~k~rl~fIDtPGd--l~s-mld~akvADlVLlV 147 (1068)
...|+|||++|||||||+++|++..... ...+.. ..-++.. +....+.++||||. +.. +......+|.+|+|
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 108 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLV 108 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEE
Confidence 4789999999999999999999874221 111110 0111222 22345677999983 333 34456788999999
Q ss_pred EeCCCCCchhH-HHHHHHHHh---CCCCcEEEEEeCCCcCCcHH-HHHHHHHHHHHHhcccccCCCeEEEEecccCCcCC
Q 046721 148 IDASHGFEMET-FEFLNLMQN---HGLPNVMGVLTHLDKFTDKK-KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQGKYT 222 (1068)
Q Consensus 148 IDas~g~e~~t-~eiL~~L~~---~GlP~vIvVLNKiDlvk~~k-~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g~~y~ 222 (1068)
+|.+.....+. ...+..+.. .+.| +++|+||+|+..... ..... ..+... +...++.+||+++
T Consensus 109 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~~~~~~~~a-~~l~~~------~~~~~ld~Sald~---- 176 (191)
T 1oix_A 109 YDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVPTDEA-RAFAEK------NGLSFIETSALDS---- 176 (191)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSCHHHH-HHHHHH------TTCEEEECCTTTC----
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccCHHHH-HHHHHH------cCCEEEEEeCCCC----
Confidence 99875322111 123333332 2445 899999999864211 11111 112111 3567888999854
Q ss_pred chhhcchHHHHH
Q 046721 223 KKDIGNLAEFIS 234 (1068)
Q Consensus 223 ~~ei~nLlR~I~ 234 (1068)
..+..+...|.
T Consensus 177 -~~v~~l~~~l~ 187 (191)
T 1oix_A 177 -TNVEAAFQTIL 187 (191)
T ss_dssp -TTHHHHHHHHH
T ss_pred -CCHHHHHHHHH
Confidence 45555555553
No 195
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.73 E-value=9.8e-09 Score=107.26 Aligned_cols=144 Identities=16% Similarity=0.144 Sum_probs=85.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcccc--------CCCCce-------eccEE--EEe------------------CCCe
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTK--------LKVPEV-------RGPVT--VVS------------------GKKR 120 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~--------~~~~tt-------~~~It--i~~------------------~~k~ 120 (1068)
+++|+|+|++|+|||||+++|++.... ..+.++ ...++ ... ....
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 568999999999999999999976211 011100 00111 111 1235
Q ss_pred eEEEEeCCCC--hhHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcH-HHHHHHHHHHH
Q 046721 121 RLQFVECPND--INGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDK-KKLRKTKQHLK 197 (1068)
Q Consensus 121 rl~fIDtPGd--l~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~-k~l~~vkk~Lk 197 (1068)
.+++|||+|. .....+ ..++.+|+|+|++.+... ...+ +...+.| +++|+||+|+.... ..+..+...++
T Consensus 110 d~iiidt~G~~~~~~~~~--~~~~~~i~vvd~~~~~~~-~~~~---~~~~~~~-~iiv~NK~Dl~~~~~~~~~~~~~~~~ 182 (221)
T 2wsm_A 110 DLLLIENVGNLICPVDFD--LGENYRVVMVSVTEGDDV-VEKH---PEIFRVA-DLIVINKVALAEAVGADVEKMKADAK 182 (221)
T ss_dssp SEEEEEEEEBSSGGGGCC--CSCSEEEEEEEGGGCTTH-HHHC---HHHHHTC-SEEEEECGGGHHHHTCCHHHHHHHHH
T ss_pred CEEEEeCCCCCCCCchhc--cccCcEEEEEeCCCcchh-hhhh---hhhhhcC-CEEEEecccCCcchhhHHHHHHHHHH
Confidence 7889998883 111111 246889999999876432 1122 2224677 68899999986421 12334444443
Q ss_pred HHhcccccCCCeEEEEecccCCcCCchhhcchHHHHHHh
Q 046721 198 HRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 198 ~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~ 236 (1068)
.. .+..++|++||++| .++..+...|...
T Consensus 183 ~~-----~~~~~i~~~Sa~~g-----~gi~~l~~~l~~~ 211 (221)
T 2wsm_A 183 LI-----NPRAKIIEMDLKTG-----KGFEEWIDFLRGI 211 (221)
T ss_dssp HH-----CTTSEEEECBTTTT-----BTHHHHHHHHHHH
T ss_pred Hh-----CCCCeEEEeecCCC-----CCHHHHHHHHHHH
Confidence 22 34678999999865 5666677666543
No 196
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.69 E-value=7.5e-08 Score=111.89 Aligned_cols=140 Identities=19% Similarity=0.291 Sum_probs=83.3
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhccc--cCC-------CCcee-ccEEEE-e--CCCeeEEEEeCCCCh-------
Q 046721 72 GEPPPYVVVVQGPPQVGKSLLIKCLIKHYT--KLK-------VPEVR-GPVTVV-S--GKKRRLQFVECPNDI------- 131 (1068)
Q Consensus 72 ~~~pP~~VaVVG~pnvGKSTLIn~L~~~~~--~~~-------~~tt~-~~Iti~-~--~~k~rl~fIDtPGdl------- 131 (1068)
..+....|+|||++|+|||||+|+|++... ... ..++. ..+.++ . +....++++||||--
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 456678899999999999999999998642 110 11111 111211 1 123478999999821
Q ss_pred --hHHHHHH---------------------HhcCEEEEEEeCC-CCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHH
Q 046721 132 --NGMIDCA---------------------KFADLALLLIDAS-HGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKK 187 (1068)
Q Consensus 132 --~smld~a---------------------kvADlVLlVIDas-~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k 187 (1068)
..+++.+ ..+++|||+++++ .++...+..++..|.. ++| +|+|+||+|++.+ .
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~-iIlVinK~Dll~~-~ 183 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIAKADTLTP-E 183 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSE-EEEEEESTTSSCH-H
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCc-EEEEEEcccCccH-H
Confidence 1222110 2245688888876 6888877778887754 776 8999999999863 3
Q ss_pred HHHHHHHHHHHHhcccccCCCeEEEEeccc
Q 046721 188 KLRKTKQHLKHRFGTELYHGAKLFKLSGLI 217 (1068)
Q Consensus 188 ~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~ 217 (1068)
.+...++.+...+... +.++|.+||.+
T Consensus 184 ev~~~k~~i~~~~~~~---~i~~~~~sa~~ 210 (418)
T 2qag_C 184 ECQQFKKQIMKEIQEH---KIKIYEFPETD 210 (418)
T ss_dssp HHHHHHHHHHHHHHHH---TCCCCCCC---
T ss_pred HHHHHHHHHHHHHHHc---CCeEEeCCCCC
Confidence 4444444444443222 56678888764
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.69 E-value=7.2e-08 Score=110.27 Aligned_cols=76 Identities=20% Similarity=0.183 Sum_probs=53.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc--cCCCCcee-ccEEEEeC---------------------CCeeEEEEeCCCC--
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT--KLKVPEVR-GPVTVVSG---------------------KKRRLQFVECPND-- 130 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~--~~~~~tt~-~~Iti~~~---------------------~k~rl~fIDtPGd-- 130 (1068)
..|+|||+||+|||||+|+|++... ...+.+|. ..+.+... ....+.|+||||.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 3589999999999999999998641 22222222 22222211 1247999999992
Q ss_pred -------h-hHHHHHHHhcCEEEEEEeCCC
Q 046721 131 -------I-NGMIDCAKFADLALLLIDASH 152 (1068)
Q Consensus 131 -------l-~smld~akvADlVLlVIDas~ 152 (1068)
+ +.++..++.||++|+|+|++.
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 2 246788899999999999975
No 198
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.63 E-value=7.1e-08 Score=112.05 Aligned_cols=136 Identities=13% Similarity=0.189 Sum_probs=85.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccC------CCCceeccEEEEe-CC--CeeEEEEeCCCC---h----------
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKL------KVPEVRGPVTVVS-GK--KRRLQFVECPND---I---------- 131 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~------~~~tt~~~Iti~~-~~--k~rl~fIDtPGd---l---------- 131 (1068)
|..+.|+|||++|+|||||+|.|++..... ....+...+.++. .. ...++++|+||- +
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~ 119 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIV 119 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHH
Confidence 333459999999999999999999973211 1222233344332 22 237899999871 1
Q ss_pred ---hH----HHHHH-H---------hc--C-EEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHH
Q 046721 132 ---NG----MIDCA-K---------FA--D-LALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRK 191 (1068)
Q Consensus 132 ---~s----mld~a-k---------vA--D-lVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~ 191 (1068)
.. ++... . .+ | +|+||+|+..++...+.+++..|. .+.| +|+|+||+|.+.+ ..+..
T Consensus 120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~-vI~Vi~KtD~Lt~-~E~~~ 196 (427)
T 2qag_B 120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVN-IIPIIAKADAISK-SELTK 196 (427)
T ss_dssp HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSE-EEEEESCGGGSCH-HHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCC-EEEEEcchhccch-HHHHH
Confidence 11 11111 1 11 2 578888998999888888988886 5665 9999999999974 45666
Q ss_pred HHHHHHHHhcccccCCCeEEEEec
Q 046721 192 TKQHLKHRFGTELYHGAKLFKLSG 215 (1068)
Q Consensus 192 vkk~Lk~~~~~e~~~~~kVf~ISA 215 (1068)
.++.+...+.. .+..||++|.
T Consensus 197 l~~~I~~~L~~---~gi~I~~is~ 217 (427)
T 2qag_B 197 FKIKITSELVS---NGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHBT---TBCCCCCCC-
T ss_pred HHHHHHHHHHH---cCCcEEecCC
Confidence 66666654432 4778888883
No 199
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.62 E-value=2.2e-07 Score=104.46 Aligned_cols=136 Identities=15% Similarity=0.168 Sum_probs=83.0
Q ss_pred EEEECCCCCChhHHHHHHHhccccC---CCCceecc-EEEEeCCCeeEEEEeCCC--ChhH----HHHHHHhcCEEEEEE
Q 046721 79 VVVQGPPQVGKSLLIKCLIKHYTKL---KVPEVRGP-VTVVSGKKRRLQFVECPN--DING----MIDCAKFADLALLLI 148 (1068)
Q Consensus 79 VaVVG~pnvGKSTLIn~L~~~~~~~---~~~tt~~~-Iti~~~~k~rl~fIDtPG--dl~s----mld~akvADlVLlVI 148 (1068)
|+++|..|||||||++.+.+..... ....|-+. +..+ ....+++++||+| .+.+ .....+.|+++|||+
T Consensus 2 IvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~ 80 (331)
T 3r7w_B 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVI 80 (331)
T ss_dssp EEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-ccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEE
Confidence 7899999999999999887654211 11111111 1111 3357899999999 4532 234578999999999
Q ss_pred eCCCCCchhHHH---HHHHHH--hCCCCcEEEEEeCCCcCCcHHH---HHHHHHHHHHHhccccc--CCCeEEEEecc
Q 046721 149 DASHGFEMETFE---FLNLMQ--NHGLPNVMGVLTHLDKFTDKKK---LRKTKQHLKHRFGTELY--HGAKLFKLSGL 216 (1068)
Q Consensus 149 Das~g~e~~t~e---iL~~L~--~~GlP~vIvVLNKiDlvk~~k~---l~~vkk~Lk~~~~~e~~--~~~kVf~ISAl 216 (1068)
|++..+...... ++..+. ..++| +++|.||+|+..+... .+.+.....+.+..... -+..+|.+||+
T Consensus 81 Ditd~~~~~~~~l~~~l~~~~~~~~~ip-illvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 81 DSQDEYINAITNLAMIIEYAYKVNPSIN-IEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCSSCTTHHHHHHHHHHHHHHHHCTTCE-EEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred ECCchHHHHHHHHHHHHHHHhhcCCCCc-EEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 998764322222 233332 23666 8899999999864321 23344433333333211 25678888986
No 200
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.46 E-value=4.3e-07 Score=107.81 Aligned_cols=108 Identities=15% Similarity=0.168 Sum_probs=66.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc---------cC---CCCc--------eeccEEEEe-----------------
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT---------KL---KVPE--------VRGPVTVVS----------------- 116 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~---------~~---~~~t--------t~~~Iti~~----------------- 116 (1068)
..|.+|+|+|++|+|||||++.|..... .. .+.. ++..+.+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 5688999999999999999999993211 00 0000 011122211
Q ss_pred --CCCeeEEEEeCCCChh---HHH----HH--HHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC
Q 046721 117 --GKKRRLQFVECPNDIN---GMI----DC--AKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 117 --~~k~rl~fIDtPGdl~---sml----d~--akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk 184 (1068)
.....++||||||.+. .+. .. +-.+|.+|||+|++.+.+ ...++..+... +|-.++|+||+|...
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHA 254 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCcccc
Confidence 1456899999999432 111 11 237899999999998764 34444444332 552378999999875
No 201
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.45 E-value=1e-08 Score=117.32 Aligned_cols=120 Identities=13% Similarity=0.113 Sum_probs=76.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc--------ccCCCCceeccEEEEeCCCeeEEEEeCCCCh-----h-----HHHHHH
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY--------TKLKVPEVRGPVTVVSGKKRRLQFVECPNDI-----N-----GMIDCA 138 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~--------~~~~~~tt~~~Iti~~~~k~rl~fIDtPGdl-----~-----smld~a 138 (1068)
..|+++|.+|+|||||+|+|++.. ++..+.+|...+.+... ..+.++||||-. . ..+..+
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~--~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 240 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE--SGATLYDTPGIINHHQMAHFVDARDLKII 240 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS--TTCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC--CCeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence 479999999999999999999862 23344445444333322 358999999921 1 133444
Q ss_pred ---HhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHh
Q 046721 139 ---KFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRF 200 (1068)
Q Consensus 139 ---kvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~ 200 (1068)
+..|.+++++++....-......+..+...+.| +++|+||+|.+.. ..+....+.+++.+
T Consensus 241 ~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~-~~~v~~k~d~~~~-~~~~~~~~~~~~~~ 303 (369)
T 3ec1_A 241 TPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRS-FVCYMANELTVHR-TKLEKADSLYANQL 303 (369)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEE-EEEEECTTSCEEE-EEGGGHHHHHHHHB
T ss_pred hcccccCceEEEEcCCceEEECCEEEEEEccCCCce-EEEEecCCccccc-ccHHHHHHHHHHhc
Confidence 778999999998532211122223444455677 8999999999853 22344455555554
No 202
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.44 E-value=1.2e-06 Score=95.94 Aligned_cols=121 Identities=21% Similarity=0.350 Sum_probs=79.4
Q ss_pred eEEEEECCCCCChhHHHHHHHhccccC---------CC-Cce-eccEEEEeC---CCeeEEEEeCCCC------------
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYTKL---------KV-PEV-RGPVTVVSG---KKRRLQFVECPND------------ 130 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~~~---------~~-~tt-~~~Iti~~~---~k~rl~fIDtPGd------------ 130 (1068)
++|+|||++|+|||||+|+|++..... .+ .+. ...+.++.. -...++++|+||-
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 579999999999999999999863110 01 111 122332221 1347899999971
Q ss_pred hhHHHH-----HH--------------HhcCEEEEEEeCC-CCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHH
Q 046721 131 INGMID-----CA--------------KFADLALLLIDAS-HGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLR 190 (1068)
Q Consensus 131 l~smld-----~a--------------kvADlVLlVIDas-~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~ 190 (1068)
+...+. .. ..|.++|+++|.. .++...+.+++..|... .+ +|+|++|+|.+.. ..+.
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~-vI~Vi~K~D~lt~-~e~~ 159 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VN-IIPVIAKADTMTL-EEKS 159 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SE-EEEEETTGGGSCH-HHHH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-Cc-EEEEEeccccCCH-HHHH
Confidence 111111 10 1258889999964 88998888999988876 55 9999999999974 4455
Q ss_pred HHHHHHHHHh
Q 046721 191 KTKQHLKHRF 200 (1068)
Q Consensus 191 ~vkk~Lk~~~ 200 (1068)
..++.+.+.+
T Consensus 160 ~~k~~i~~~l 169 (270)
T 3sop_A 160 EFKQRVRKEL 169 (270)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 203
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.41 E-value=1.8e-08 Score=115.33 Aligned_cols=120 Identities=14% Similarity=0.140 Sum_probs=74.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc---------ccCCCCceeccEEEEeCCCeeEEEEeCCCC-----hhH-----HHHH
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY---------TKLKVPEVRGPVTVVSGKKRRLQFVECPND-----ING-----MIDC 137 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~---------~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd-----l~s-----mld~ 137 (1068)
..|+++|.+|+|||||+|+|++.. ++..+.+|+..+.+... ..+.++||||- +.. .+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~--~~~~liDtPG~~~~~~~~~~l~~~~l~~ 238 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD--EESSLYDTPGIINHHQMAHYVGKQSLKL 238 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS--SSCEEEECCCBCCTTSGGGGSCHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec--CCeEEEeCCCcCcHHHHHHHhhHHHHHH
Confidence 579999999999999999999863 23334444443333322 24899999992 111 2222
Q ss_pred ---HHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHh
Q 046721 138 ---AKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRF 200 (1068)
Q Consensus 138 ---akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~ 200 (1068)
.+..+.+++++++....-......+..+...+.| +++|+||+|.+.. ..+......+++.+
T Consensus 239 ~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~-~~~v~nk~d~~~~-~~~~~~~~~~~~~~ 302 (368)
T 3h2y_A 239 ITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRA-FTCHFSNRLTIHR-TKLEKADELYKNHA 302 (368)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEE-EEEEECTTSCEEE-EEHHHHHHHHHHHB
T ss_pred hccccccCceEEEEcCCCEEEEcceEEEEEecCCCce-EEEEecCcccccc-ccHHHHHHHHHHHh
Confidence 2667899999998532211222223344455677 8999999999863 23455555565554
No 204
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.39 E-value=3.1e-06 Score=98.11 Aligned_cols=156 Identities=16% Similarity=0.064 Sum_probs=92.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcccc--C-----CCCceeccEEEEeCC-CeeEEEEeCCCC------hhHHHHHH--H
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTK--L-----KVPEVRGPVTVVSGK-KRRLQFVECPND------INGMIDCA--K 139 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~--~-----~~~tt~~~Iti~~~~-k~rl~fIDtPGd------l~smld~a--k 139 (1068)
+.+|+|+|++|+|||||+|+|+|.... . ...+++..+ +.... ...++++|+||- +..+++.+ .
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~-v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH-PYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE-EEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE-eccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 569999999999999999999995311 1 111112122 22222 237899999982 33455543 3
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC-c-------HHHHHHHHHHHHHHh----cccccCC
Q 046721 140 FADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT-D-------KKKLRKTKQHLKHRF----GTELYHG 207 (1068)
Q Consensus 140 vADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk-~-------~k~l~~vkk~Lk~~~----~~e~~~~ 207 (1068)
..|.+++ +|+.. ++.+...++..|...+.| +++|+||.|++- + ......+.+.++... .....+.
T Consensus 148 ~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p-~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~ 224 (413)
T 1tq4_A 148 EYDFFII-ISATR-FKKNDIDIAKAISMMKKE-FYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAE 224 (413)
T ss_dssp GCSEEEE-EESSC-CCHHHHHHHHHHHHTTCE-EEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred ccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCC-eEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455555 77654 456667788888888887 899999998751 0 001122333333322 1111345
Q ss_pred CeEEEEecccCCcCCchhhcchHHHHHHhhc
Q 046721 208 AKLFKLSGLIQGKYTKKDIGNLAEFISVMKF 238 (1068)
Q Consensus 208 ~kVf~ISAl~g~~y~~~ei~nLlR~I~~~k~ 238 (1068)
..+|++|+..- ...++..|+..|....+
T Consensus 225 ~~iiliSsh~l---~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 225 PPIFLLSNKNV---CHYDFPVLMDKLISDLP 252 (413)
T ss_dssp CCEEECCTTCT---TSTTHHHHHHHHHHHSC
T ss_pred CcEEEEecCcC---CccCHHHHHHHHHHhCc
Confidence 68999998532 33457777766655444
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.35 E-value=4.5e-07 Score=94.90 Aligned_cols=145 Identities=19% Similarity=0.190 Sum_probs=78.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcccc-CCCCcee---c-------------cEE-EEeC-------------------C
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTK-LKVPEVR---G-------------PVT-VVSG-------------------K 118 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~-~~~~tt~---~-------------~It-i~~~-------------------~ 118 (1068)
++.|+|+|.+|||||||+++|+..... ..+.+.. + .+. +..+ .
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 117 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNLD 117 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCGG
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhcC
Confidence 578999999999999999999976311 1111100 0 011 1101 0
Q ss_pred CeeEEEEeCCCChhHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcH-HHHHHHHHHHH
Q 046721 119 KRRLQFVECPNDINGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDK-KKLRKTKQHLK 197 (1068)
Q Consensus 119 k~rl~fIDtPGdl~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~-k~l~~vkk~Lk 197 (1068)
...+.++||+|.+..........+.+++|+|+..+..... .... ..+.| +++|+||+|+.... ..+....+.++
T Consensus 118 ~~d~~~id~~g~i~~~~s~~~~~~~~~~v~~~~~~~~~~~-~~~~---~~~~~-~iiv~NK~Dl~~~~~~~~~~~~~~~~ 192 (226)
T 2hf9_A 118 EIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDTIE-KHPG---IMKTA-DLIVINKIDLADAVGADIKKMENDAK 192 (226)
T ss_dssp GCSEEEEECCSCSSGGGGCCCSCSEEEEEEEGGGCTTTTT-TCHH---HHTTC-SEEEEECGGGHHHHTCCHHHHHHHHH
T ss_pred CCCEEEEeCCCCccCcchhhhccCcEEEEEecCcchhhHh-hhhh---HhhcC-CEEEEeccccCchhHHHHHHHHHHHH
Confidence 1157777777732210000123466777888643322111 1111 13567 68899999986421 12333333333
Q ss_pred HHhcccccCCCeEEEEecccCCcCCchhhcchHHHHHH
Q 046721 198 HRFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 198 ~~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
.. ....++|++||++| ..+..+...|..
T Consensus 193 ~~-----~~~~~~~~~Sa~~g-----~gv~~l~~~l~~ 220 (226)
T 2hf9_A 193 RI-----NPDAEVVLLSLKTM-----EGFDKVLEFIEK 220 (226)
T ss_dssp HH-----CTTSEEEECCTTTC-----TTHHHHHHHHHH
T ss_pred Hh-----CCCCeEEEEEecCC-----CCHHHHHHHHHH
Confidence 21 34678999999865 566666665543
No 206
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.34 E-value=1.7e-06 Score=96.08 Aligned_cols=140 Identities=21% Similarity=0.315 Sum_probs=76.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhc-c-ccCCC--------Cce-eccEEEEe---CCCeeEEEEeCCCC--------
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKH-Y-TKLKV--------PEV-RGPVTVVS---GKKRRLQFVECPND-------- 130 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~-~-~~~~~--------~tt-~~~Iti~~---~~k~rl~fIDtPGd-------- 130 (1068)
.+....|+|||++|+|||||+|+|.+. . ....+ .+. ...+.+.. +....++++||||-
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 355688999999999999999999875 2 11100 111 11122221 22568999999983
Q ss_pred -hhHHHH--------HHH-------------hcCEEEEEEeCCC-CCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHH
Q 046721 131 -INGMID--------CAK-------------FADLALLLIDASH-GFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKK 187 (1068)
Q Consensus 131 -l~smld--------~ak-------------vADlVLlVIDas~-g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k 187 (1068)
+..+++ .+. .|+++||+++++. +++....+++..+. .+.+ +++|+||.|+... .
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~-iilV~~K~Dl~~~-~ 171 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVN-IVPVIAKADTLTL-K 171 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSC-EEEEECCGGGSCH-H
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCC-EEEEEEeCCCCCH-H
Confidence 122332 111 1345777777654 58877766666653 3456 8999999999863 2
Q ss_pred HHHHHHHHHHHHhcccccCCCeEEEEecccC
Q 046721 188 KLRKTKQHLKHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 188 ~l~~vkk~Lk~~~~~e~~~~~kVf~ISAl~g 218 (1068)
.+...++.+...+.. .+.++|.+||+++
T Consensus 172 e~~~~~~~~~~~~~~---~~~~~~e~Sa~~~ 199 (301)
T 2qnr_A 172 ERERLKKRILDEIEE---HNIKIYHLPDAES 199 (301)
T ss_dssp HHHHHHHHHHHHHHH---TTCCCCCCC----
T ss_pred HHHHHHHHHHHHHHH---cCCeEEecCCccc
Confidence 333333333333221 1468899999864
No 207
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.21 E-value=1.4e-06 Score=100.43 Aligned_cols=79 Identities=18% Similarity=0.127 Sum_probs=49.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc--ccCCCCceeccEE-EEeCC-----------------CeeEEEEeCCCChh-
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY--TKLKVPEVRGPVT-VVSGK-----------------KRRLQFVECPNDIN- 132 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~--~~~~~~tt~~~It-i~~~~-----------------k~rl~fIDtPGdl~- 132 (1068)
..+..|+|||+||||||||+|+|++.. +...+.+|..+.. .+... ...++|+||||-..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 345689999999999999999999873 2233334433322 22111 23599999999321
Q ss_pred ---------HHHHHHHhcCEEEEEEeCCC
Q 046721 133 ---------GMIDCAKFADLALLLIDASH 152 (1068)
Q Consensus 133 ---------smld~akvADlVLlVIDas~ 152 (1068)
..+..++.||+||+|+|++.
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 36778899999999999963
No 208
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.19 E-value=3.7e-05 Score=89.80 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=76.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccC------------CCC------c--eeccEEEEe-----------------
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKL------------KVP------E--VRGPVTVVS----------------- 116 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~------------~~~------t--t~~~Iti~~----------------- 116 (1068)
++|.+|+++|++|+||||++..|....... .+. . ....+.+..
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~ 177 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDY 177 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHH
Confidence 468999999999999999999998532100 000 0 011122211
Q ss_pred --CCCeeEEEEeCCCChh---H-H-----HHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCc
Q 046721 117 --GKKRRLQFVECPNDIN---G-M-----IDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTD 185 (1068)
Q Consensus 117 --~~k~rl~fIDtPGdl~---s-m-----ld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~ 185 (1068)
..+..++||||||.+. . + +..+..+|.+|||+||..+.+ ....+..+.. .++-..+|+||+|....
T Consensus 178 a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~--a~~~a~~f~~-~~~i~gVIlTKlD~~~~ 254 (443)
T 3dm5_A 178 FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ--AYNQALAFKE-ATPIGSIIVTKLDGSAK 254 (443)
T ss_dssp HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHH-SCTTEEEEEECCSSCSS
T ss_pred HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh--HHHHHHHHHh-hCCCeEEEEECCCCccc
Confidence 0236899999999321 1 1 122345799999999987643 2334444432 33435689999999764
Q ss_pred HHHHHHHHHHHHHHhcccccCCCeEEEEec
Q 046721 186 KKKLRKTKQHLKHRFGTELYHGAKLFKLSG 215 (1068)
Q Consensus 186 ~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISA 215 (1068)
...+..+. . ..+.+|.+++.
T Consensus 255 gG~~ls~~----~------~~g~PI~fig~ 274 (443)
T 3dm5_A 255 GGGALSAV----A------ATGAPIKFIGT 274 (443)
T ss_dssp HHHHHHHH----H------TTCCCEEEEEC
T ss_pred ccHHHHHH----H------HHCCCEEEEEc
Confidence 32222211 1 13678888873
No 209
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.15 E-value=4.3e-06 Score=97.57 Aligned_cols=108 Identities=17% Similarity=0.188 Sum_probs=68.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc---------cCCCC------------------------ceeccEEE-----E
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT---------KLKVP------------------------EVRGPVTV-----V 115 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~---------~~~~~------------------------tt~~~Iti-----~ 115 (1068)
++|.+|+|+|++|+||||+++.|..... ...+. +++.++.+ .
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~ 176 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGME 176 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHH
Confidence 5678999999999999999999987421 00000 11111111 0
Q ss_pred eCCCeeEEEEeCCCChh---HHHHH---H---HhcCEEEEEEeCCCCCchhHHHHHHHHHhCCC-CcEEEEEeCCCcCC
Q 046721 116 SGKKRRLQFVECPNDIN---GMIDC---A---KFADLALLLIDASHGFEMETFEFLNLMQNHGL-PNVMGVLTHLDKFT 184 (1068)
Q Consensus 116 ~~~k~rl~fIDtPGdl~---smld~---a---kvADlVLlVIDas~g~e~~t~eiL~~L~~~Gl-P~vIvVLNKiDlvk 184 (1068)
......++||||||.+. .++.. + ..+|.+|||+|+..+.+ ....+..+. .++ |-..+|+||+|...
T Consensus 177 ~~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~~~~~~~~-~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 177 KFKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AGIQAKAFK-EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp TTSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HHHHHHHHH-TTSCSCEEEEEECSSSCS
T ss_pred HhhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HHHHHHHHh-hcccCCeEEEEeCCCCcc
Confidence 11356899999999432 12221 1 25899999999987752 333343333 346 65788999999865
No 210
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.11 E-value=3.1e-06 Score=102.17 Aligned_cols=91 Identities=13% Similarity=0.170 Sum_probs=57.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcccc-CCCCceec---cEEEE-----eCCCeeEEEEeCCCC--hh-------H-H
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTK-LKVPEVRG---PVTVV-----SGKKRRLQFVECPND--IN-------G-M 134 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~-~~~~tt~~---~Iti~-----~~~k~rl~fIDtPGd--l~-------s-m 134 (1068)
+++.+|+|||.||+|||||+|+|++.... ....++++ ++... ......++||||||- .. . +
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~ 115 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWI 115 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHH
Confidence 55688999999999999999999997432 22222221 12221 234678999999992 11 1 1
Q ss_pred HH-HHHhcCEEEEEEeCCCCCchhHHHHHHHHH
Q 046721 135 ID-CAKFADLALLLIDASHGFEMETFEFLNLMQ 166 (1068)
Q Consensus 135 ld-~akvADlVLlVIDas~g~e~~t~eiL~~L~ 166 (1068)
.. ++-.++ ++|+|+..+++.+...++..+.
T Consensus 116 fala~llss--~lv~n~~~~i~~~dl~~l~~v~ 146 (592)
T 1f5n_A 116 FALAVLLSS--TFVYNSIGTINQQAMDQLYYVT 146 (592)
T ss_dssp HHHHHHHCS--EEEEEEESCSSHHHHHTTHHHH
T ss_pred HHHHHHhcC--eEEEECCCCccHHHHHHHHHHH
Confidence 11 111244 5777888888888776665543
No 211
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.00 E-value=8.8e-06 Score=93.75 Aligned_cols=79 Identities=15% Similarity=0.144 Sum_probs=56.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEE-EEeCC-----------------CeeEEEEeCCCC--
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVT-VVSGK-----------------KRRLQFVECPND-- 130 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~It-i~~~~-----------------k~rl~fIDtPGd-- 130 (1068)
.....|+|||+||||||||+|+|++.. +...+.++..+.. .+... ...+.|+|+||-
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 345789999999999999999999953 2334444433322 11111 146899999981
Q ss_pred -------hh-HHHHHHHhcCEEEEEEeCCC
Q 046721 131 -------IN-GMIDCAKFADLALLLIDASH 152 (1068)
Q Consensus 131 -------l~-smld~akvADlVLlVIDas~ 152 (1068)
+. .++..+..+|.+++|+|+..
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 32 47778899999999999964
No 212
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.97 E-value=4.8e-05 Score=84.49 Aligned_cols=126 Identities=20% Similarity=0.217 Sum_probs=76.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcccc---------CC---CCc--------eeccEEEEeC------------------
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTK---------LK---VPE--------VRGPVTVVSG------------------ 117 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~---------~~---~~t--------t~~~Iti~~~------------------ 117 (1068)
|.+|+++|++|+||||++..|...... .. ... .+..+.+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999864210 00 000 0011211111
Q ss_pred -CCeeEEEEeCCCChh-----HHH------HHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCc
Q 046721 118 -KKRRLQFVECPNDIN-----GMI------DCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTD 185 (1068)
Q Consensus 118 -~k~rl~fIDtPGdl~-----sml------d~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~ 185 (1068)
....++||||||.+. .++ ..+..+|.+|||+|+..+. .....+..+.. .++-..+|+||+|....
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~~-~~~i~gvVlnk~D~~~~ 254 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ--KAYDLASKFNQ-ASKIGTIIITKMDGTAK 254 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHH-TCTTEEEEEECGGGCTT
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH--HHHHHHHHHHh-hCCCCEEEEeCCCCCcc
Confidence 345799999999544 232 2456799999999997642 33444444433 46646779999998653
Q ss_pred HHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 186 KKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 186 ~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
... +.. +... .+.+|.+++
T Consensus 255 ~g~---~~~-~~~~------~~~pi~~i~ 273 (297)
T 1j8m_F 255 GGG---ALS-AVAA------TGATIKFIG 273 (297)
T ss_dssp HHH---HHH-HHHT------TTCCEEEEE
T ss_pred hHH---HHH-HHHH------HCcCEEEEe
Confidence 221 111 2222 267888877
No 213
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.93 E-value=6.8e-05 Score=87.43 Aligned_cols=130 Identities=20% Similarity=0.227 Sum_probs=75.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccccC--CC----------C------c--eeccEEEEe----------------
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYTKL--KV----------P------E--VRGPVTVVS---------------- 116 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~--~~----------~------t--t~~~Iti~~---------------- 116 (1068)
.++|.+|+++|++|+||||++..|....... .+ . . ....+.+..
T Consensus 94 ~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 94 TKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp CSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 3568999999999999999999998532100 00 0 0 000111110
Q ss_pred ---CCCeeEEEEeCCCChh---------HHHH--HHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCc
Q 046721 117 ---GKKRRLQFVECPNDIN---------GMID--CAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDK 182 (1068)
Q Consensus 117 ---~~k~rl~fIDtPGdl~---------smld--~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDl 182 (1068)
.....+++|||||.+. .+.. .+-..|.++||+|+..+.+ ...++..+... ++...+|+||+|.
T Consensus 174 ~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~--a~~~a~~f~~~-~~~~gVIlTKlD~ 250 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK--AYDLASRFHQA-SPIGSVIITKMDG 250 (433)
T ss_dssp HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--GHHHHHHHHHH-CSSEEEEEECGGG
T ss_pred HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH--HHHHHHHHhcc-cCCcEEEEecccc
Confidence 1256899999999422 1111 1224599999999987643 23444444422 2225779999998
Q ss_pred CCcHHHHHHHHHHHHHHhcccccCCCeEEEEec
Q 046721 183 FTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSG 215 (1068)
Q Consensus 183 vk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISA 215 (1068)
.........+.. . .+.+|.+++.
T Consensus 251 ~a~~G~als~~~----~------~g~Pi~fig~ 273 (433)
T 3kl4_A 251 TAKGGGALSAVV----A------TGATIKFIGT 273 (433)
T ss_dssp CSCHHHHHHHHH----H------HTCEEEEEEC
T ss_pred cccchHHHHHHH----H------HCCCEEEEEC
Confidence 753322222221 1 1678888884
No 214
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.68 E-value=0.00034 Score=78.71 Aligned_cols=127 Identities=18% Similarity=0.175 Sum_probs=75.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccC---------CC---Cc--------eeccEEEEe-----------------
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKL---------KV---PE--------VRGPVTVVS----------------- 116 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~---------~~---~t--------t~~~Iti~~----------------- 116 (1068)
.+|.+|+++|++|+|||||++.|.+.+... .+ .. .+-++.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 568899999999999999999999853100 00 00 001111111
Q ss_pred --CCCeeEEEEeCCCChh------H-H--HHHHHhcCEEEEEEeCCCCCchhHHHHHHHHH-hCCCCcEEEEEeCCCcCC
Q 046721 117 --GKKRRLQFVECPNDIN------G-M--IDCAKFADLALLLIDASHGFEMETFEFLNLMQ-NHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 117 --~~k~rl~fIDtPGdl~------s-m--ld~akvADlVLlVIDas~g~e~~t~eiL~~L~-~~GlP~vIvVLNKiDlvk 184 (1068)
.....+.++||+|... . + +..+-..|-.++|+|+..+. +....+..+. ..++. ++++||+|...
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it--~iilTKlD~~a 282 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKID--GIILTKLDADA 282 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCC--EEEEECGGGCS
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCC--EEEEeCcCCcc
Confidence 0134678899998321 1 1 22234579999999988763 3334444443 45664 67999999864
Q ss_pred cHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 185 DKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 185 ~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
....+-.+.. .. +.+|.+++
T Consensus 283 ~~G~~l~~~~----~~------~~pi~~i~ 302 (328)
T 3e70_C 283 RGGAALSISY----VI------DAPILFVG 302 (328)
T ss_dssp CCHHHHHHHH----HH------TCCEEEEE
T ss_pred chhHHHHHHH----HH------CCCEEEEe
Confidence 3222222221 11 67888888
No 215
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.61 E-value=3.9e-05 Score=84.52 Aligned_cols=54 Identities=28% Similarity=0.356 Sum_probs=34.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc---ccCCCCceeccEEEEeCCCeeEEEEeCCC
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY---TKLKVPEVRGPVTVVSGKKRRLQFVECPN 129 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~---~~~~~~tt~~~Iti~~~~k~rl~fIDtPG 129 (1068)
..+..|+|||.||||||||+|+|++.. ++..+.+|+....+.. ...+.++||||
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~--~~~~~l~DtpG 174 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV--GKELELLDTPG 174 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE--TTTEEEEECCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe--CCCEEEEECcC
Confidence 457899999999999999999999864 3334444443322222 34799999999
No 216
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.54 E-value=0.00054 Score=80.90 Aligned_cols=128 Identities=20% Similarity=0.307 Sum_probs=74.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccc----------cCCCCc----------eeccEEEEe----------------
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYT----------KLKVPE----------VRGPVTVVS---------------- 116 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~----------~~~~~t----------t~~~Iti~~---------------- 116 (1068)
..++.+|+|||++|+|||||++.|.+.+. ...... .+..|.++.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~ 369 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ 369 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHH
Confidence 35678999999999999999999987421 011000 011122211
Q ss_pred ---CCCeeEEEEeCCCChh---H-------HHHHHH-----hcCEEEEEEeCCCCCchhHHHHHHHHH-hCCCCcEEEEE
Q 046721 117 ---GKKRRLQFVECPNDIN---G-------MIDCAK-----FADLALLLIDASHGFEMETFEFLNLMQ-NHGLPNVMGVL 177 (1068)
Q Consensus 117 ---~~k~rl~fIDtPGdl~---s-------mld~ak-----vADlVLlVIDas~g~e~~t~eiL~~L~-~~GlP~vIvVL 177 (1068)
..+..+++|||+|.+. . +...++ ..+-+|||+|++.|... ...+..+. ..|+. .+|+
T Consensus 370 ~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~a--l~~ak~f~~~~~it--gvIl 445 (503)
T 2yhs_A 370 AAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA--VSQAKLFHEAVGLT--GITL 445 (503)
T ss_dssp HHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH--HHHHHHHHHHTCCS--EEEE
T ss_pred HHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHH--HHHHHHHHhhcCCC--EEEE
Confidence 1245689999999421 1 222222 14678999999876422 23333333 45766 5699
Q ss_pred eCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 178 THLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 178 NKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
||+|.......+-.+.. .+ +.+|.|+.
T Consensus 446 TKLD~takgG~~lsi~~----~~------~~PI~fig 472 (503)
T 2yhs_A 446 TKLDGTAKGGVIFSVAD----QF------GIPIRYIG 472 (503)
T ss_dssp ECGGGCSCCTHHHHHHH----HH------CCCEEEEE
T ss_pred EcCCCcccccHHHHHHH----HH------CCCEEEEe
Confidence 99998643322222222 12 56777776
No 217
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.43 E-value=0.00033 Score=85.11 Aligned_cols=65 Identities=15% Similarity=0.270 Sum_probs=40.1
Q ss_pred eeEEEEeCCCC-------h----h-HHHHHHH-----hcCEEEEEEeCCCCCch-hHHHHHHHHHhCCCCcEEEEEeCCC
Q 046721 120 RRLQFVECPND-------I----N-GMIDCAK-----FADLALLLIDASHGFEM-ETFEFLNLMQNHGLPNVMGVLTHLD 181 (1068)
Q Consensus 120 ~rl~fIDtPGd-------l----~-smld~ak-----vADlVLlVIDas~g~e~-~t~eiL~~L~~~GlP~vIvVLNKiD 181 (1068)
-.++++|.||- + . .+.+.+. ...++|++++++..+.. ....++..+...|.+ +|+|+||.|
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~r-tI~VlTK~D 225 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDR-TIGILTKPD 225 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCS-EEEEEECGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCc-eEEEecchh
Confidence 35899999961 1 1 1233322 23677888877644432 223455555556777 789999999
Q ss_pred cCCc
Q 046721 182 KFTD 185 (1068)
Q Consensus 182 lvk~ 185 (1068)
++..
T Consensus 226 lv~~ 229 (608)
T 3szr_A 226 LVDK 229 (608)
T ss_dssp GSSS
T ss_pred hcCc
Confidence 9863
No 218
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.39 E-value=0.0008 Score=78.48 Aligned_cols=108 Identities=21% Similarity=0.234 Sum_probs=64.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccC-------------CCCc--------eeccEEEEe----------------
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKL-------------KVPE--------VRGPVTVVS---------------- 116 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~-------------~~~t--------t~~~Iti~~---------------- 116 (1068)
.+|.+|+|+|++|+||||++..|....... .... ....+.++.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 568999999999999999998887432100 0000 001122111
Q ss_pred ---CCCeeEEEEeCCCChh---HHH------HHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC
Q 046721 117 ---GKKRRLQFVECPNDIN---GMI------DCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 117 ---~~k~rl~fIDtPGdl~---sml------d~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk 184 (1068)
.....++||||||.+. .+. +.+-.+|.++||+|+..+.+ ....+..+.. +++-.-+|+||+|...
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f~~-~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKAFNE-ALPLTGVVLTKVDGDA 254 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHHHH-HSCCCCEEEECTTSSS
T ss_pred HHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHHHhc-cCCCeEEEEecCCCCc
Confidence 1356799999999432 122 22447899999999987632 2333333321 2332245899999864
No 219
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.33 E-value=0.0015 Score=72.74 Aligned_cols=128 Identities=20% Similarity=0.297 Sum_probs=72.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhcccc--CCC-----Cce-------------eccEEEEe----------------
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYTK--LKV-----PEV-------------RGPVTVVS---------------- 116 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~--~~~-----~tt-------------~~~Iti~~---------------- 116 (1068)
..+|.+|+|+|++|+||||++..|.+.... ..+ .+. ...+.++.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 356889999999999999999999874311 000 000 00122111
Q ss_pred ---CCCeeEEEEeCCCChh---HHHH-------HH-----HhcCEEEEEEeCCCCCchhHHHHHH-HHHhCCCCcEEEEE
Q 046721 117 ---GKKRRLQFVECPNDIN---GMID-------CA-----KFADLALLLIDASHGFEMETFEFLN-LMQNHGLPNVMGVL 177 (1068)
Q Consensus 117 ---~~k~rl~fIDtPGdl~---smld-------~a-----kvADlVLlVIDas~g~e~~t~eiL~-~L~~~GlP~vIvVL 177 (1068)
.....++++||||.+. .+++ .+ ..+|.++||+|+..+. .....+. .....++. -+|+
T Consensus 181 ~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~a~~~~~~~~i~--gvVl 256 (306)
T 1vma_A 181 HALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEAVNVT--GIIL 256 (306)
T ss_dssp HHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHHSCCC--EEEE
T ss_pred HHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHHHHHHHhcCCCC--EEEE
Confidence 1244699999999532 1211 11 1378899999997442 1222222 22334554 4588
Q ss_pred eCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 178 THLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 178 NKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
||+|.......+..+... . +.+|.+++
T Consensus 257 Tk~D~~~~gG~~l~~~~~----~------~~Pi~~i~ 283 (306)
T 1vma_A 257 TKLDGTAKGGITLAIARE----L------GIPIKFIG 283 (306)
T ss_dssp ECGGGCSCTTHHHHHHHH----H------CCCEEEEE
T ss_pred eCCCCccchHHHHHHHHH----H------CCCEEEEe
Confidence 999987533322222222 2 67888876
No 220
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.30 E-value=0.0022 Score=71.90 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=64.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhcccc----------CC--C------Cce-----eccEEEE-eC-----------
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYTK----------LK--V------PEV-----RGPVTVV-SG----------- 117 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~----------~~--~------~tt-----~~~Iti~-~~----------- 117 (1068)
..+|.+|+|+|++|+||||++..|.+.... .. . ... +..+.++ ..
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~ 181 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVF 181 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHH
Confidence 457889999999999999999998764210 00 0 000 2234433 11
Q ss_pred --------CCeeEEEEeCCCChhH---HHHHH------------HhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEE
Q 046721 118 --------KKRRLQFVECPNDING---MIDCA------------KFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVM 174 (1068)
Q Consensus 118 --------~k~rl~fIDtPGdl~s---mld~a------------kvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vI 174 (1068)
....++||||||.+.. ++..+ ..+|.++||+|+..+. .....+..+. ..++-.=
T Consensus 182 ~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~--~~l~~~~~~~-~~~~i~G 258 (320)
T 1zu4_A 182 DAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQ--NGVIQAEEFS-KVADVSG 258 (320)
T ss_dssp HHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTH--HHHHHHHHHT-TTSCCCE
T ss_pred HHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcH--HHHHHHHHHh-hcCCCcE
Confidence 2457999999995442 22211 1278999999998542 2222222222 2233223
Q ss_pred EEEeCCCcCC
Q 046721 175 GVLTHLDKFT 184 (1068)
Q Consensus 175 vVLNKiDlvk 184 (1068)
+|+||+|...
T Consensus 259 vVltk~d~~~ 268 (320)
T 1zu4_A 259 IILTKMDSTS 268 (320)
T ss_dssp EEEECGGGCS
T ss_pred EEEeCCCCCC
Confidence 6899999764
No 221
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.23 E-value=0.0031 Score=70.14 Aligned_cols=126 Identities=22% Similarity=0.270 Sum_probs=72.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcccc---------CCC---C------c--eeccEEEEeC-----------------
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTK---------LKV---P------E--VRGPVTVVSG----------------- 117 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~---------~~~---~------t--t~~~Iti~~~----------------- 117 (1068)
++.+|+|+|++|+|||||++.|.+.+.. ..+ . . .+..+.++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999874210 000 0 0 0111222110
Q ss_pred --CCeeEEEEeCCCChh---HHHH-------H-----HHhcCEEEEEEeCCCCCchhHHHHHHHH-HhCCCCcEEEEEeC
Q 046721 118 --KKRRLQFVECPNDIN---GMID-------C-----AKFADLALLLIDASHGFEMETFEFLNLM-QNHGLPNVMGVLTH 179 (1068)
Q Consensus 118 --~k~rl~fIDtPGdl~---smld-------~-----akvADlVLlVIDas~g~e~~t~eiL~~L-~~~GlP~vIvVLNK 179 (1068)
....+.++||+|... ..+. + +...+.++|++|+..+.. ....+..+ ...|+. ++++||
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~t--~iivTh 256 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGLT--GVIVTK 256 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCCS--EEEEEC
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCCc--EEEEEC
Confidence 123577899998321 1111 1 123688999999987653 33334433 345764 679999
Q ss_pred CCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 180 LDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 180 iDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
.|.......+-.+ .+.+ +.+|.+++
T Consensus 257 ~d~~a~gg~~l~i----~~~~------~~pi~~ig 281 (304)
T 1rj9_A 257 LDGTAKGGVLIPI----VRTL------KVPIKFVG 281 (304)
T ss_dssp TTSSCCCTTHHHH----HHHH------CCCEEEEE
T ss_pred CcccccccHHHHH----HHHH------CCCeEEEe
Confidence 9976432222222 2222 66788876
No 222
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.14 E-value=0.0031 Score=73.32 Aligned_cols=107 Identities=21% Similarity=0.167 Sum_probs=63.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccC---------CCC---------c--eeccEEEEe------------------
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKL---------KVP---------E--VRGPVTVVS------------------ 116 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~---------~~~---------t--t~~~Iti~~------------------ 116 (1068)
+|.+|+|+|++|+||||++..|.+..... .+. + ....+.++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999988642100 000 0 000111111
Q ss_pred -CCCeeEEEEeCCCChh---HHH------HHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC
Q 046721 117 -GKKRRLQFVECPNDIN---GMI------DCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 117 -~~k~rl~fIDtPGdl~---sml------d~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk 184 (1068)
.....+++|||||.+. .++ ..+-.+|.+|||+|+..+. .....+..+.. .++..-+|+||+|...
T Consensus 177 ~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq--~av~~a~~f~~-~l~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAFDE-KVGVTGLVLTKLDGDA 251 (425)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHH-HTCCCEEEEESGGGCS
T ss_pred HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH--HHHHHHHHHHh-cCCceEEEEeCcCCcc
Confidence 1245699999998432 122 1223589999999997652 22233333321 2332356899999764
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.13 E-value=0.0011 Score=72.85 Aligned_cols=92 Identities=15% Similarity=0.252 Sum_probs=57.7
Q ss_pred eCCCChh----HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhc
Q 046721 126 ECPNDIN----GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFG 201 (1068)
Q Consensus 126 DtPGdl~----smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~ 201 (1068)
..||.+. .++..+..||+||+|+||..+.......+-..+ .+.| +|+|+||+|++.. .......+. +.
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp-~ilVlNK~DL~~~-~~~~~~~~~----~~ 76 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKP-RIMLLNKADKADA-AVTQQWKEH----FE 76 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSC-EEEEEECGGGSCH-HHHHHHHHH----HH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCC-EEEEEECcccCCH-HHHHHHHHH----HH
Confidence 4688654 477788999999999999987765443444443 4667 7899999999863 333222222 21
Q ss_pred ccccCCCeEEEEecccCCcCCchhhcchHHHH
Q 046721 202 TELYHGAKLFKLSGLIQGKYTKKDIGNLAEFI 233 (1068)
Q Consensus 202 ~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I 233 (1068)
. .+.+++++||.++ .++..|...+
T Consensus 77 ~---~g~~~i~iSA~~~-----~gi~~L~~~i 100 (282)
T 1puj_A 77 N---QGIRSLSINSVNG-----QGLNQIVPAS 100 (282)
T ss_dssp T---TTCCEEECCTTTC-----TTGGGHHHHH
T ss_pred h---cCCcEEEEECCCc-----ccHHHHHHHH
Confidence 1 2458999999855 4555555444
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.06 E-value=0.00027 Score=76.96 Aligned_cols=51 Identities=20% Similarity=0.263 Sum_probs=33.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc---cCCCCceeccEEEEeCCCeeEEEEeCCC
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT---KLKVPEVRGPVTVVSGKKRRLQFVECPN 129 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~---~~~~~tt~~~Iti~~~~k~rl~fIDtPG 129 (1068)
..|+|||.||+|||||+|+|++... +..+.+|+....+.. ...+.++||||
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~--~~~~~l~DtpG 153 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL--ENGVKILDTPG 153 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC--TTSCEEESSCE
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe--CCCEEEEECCC
Confidence 5899999999999999999998642 233333333222222 34789999999
No 225
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.99 E-value=0.00066 Score=79.39 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
.+-.+|+|+|++++|||||+|.|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45689999999999999999999974
No 226
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.92 E-value=0.0045 Score=63.20 Aligned_cols=105 Identities=10% Similarity=0.072 Sum_probs=69.7
Q ss_pred eEEEEECC-CCCChhHHHHHHHhccccC---------CCC--------ceeccEEEEe-------------CCCeeEEEE
Q 046721 77 YVVVVQGP-PQVGKSLLIKCLIKHYTKL---------KVP--------EVRGPVTVVS-------------GKKRRLQFV 125 (1068)
Q Consensus 77 ~~VaVVG~-pnvGKSTLIn~L~~~~~~~---------~~~--------tt~~~Iti~~-------------~~k~rl~fI 125 (1068)
++|+|++. .|+||||+.-.|....... .++ .....+.+.. .....+++|
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~vii 81 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIV 81 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEE
Confidence 47888865 8899999887776532100 000 0011122221 124689999
Q ss_pred eCCCChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCC-----CCcEEEEEeCCCcC
Q 046721 126 ECPNDING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHG-----LPNVMGVLTHLDKF 183 (1068)
Q Consensus 126 DtPGdl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~G-----lP~vIvVLNKiDlv 183 (1068)
|||+.+.. +..++..||.+|+++.++..- .....++..+...+ ++ +.+|+|+++.-
T Consensus 82 D~~~~~~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~-~~vv~N~~~~~ 143 (206)
T 4dzz_A 82 DGAGSLSVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVE-ARFLITRKIEM 143 (206)
T ss_dssp ECCSSSSHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCE-EEEEECSBCTT
T ss_pred ECCCCCCHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCc-EEEEEeccCCC
Confidence 99986654 667788999999999987655 66667888887654 44 58899999853
No 227
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.89 E-value=0.0014 Score=72.58 Aligned_cols=74 Identities=11% Similarity=0.094 Sum_probs=50.0
Q ss_pred HHHhcCEEEEEEeCCCCC-chhH-HHHHHHHHhCCCCcEEEEEeCCCcCCcHH--HHHHHHHHHHHHhcccccCCCeEEE
Q 046721 137 CAKFADLALLLIDASHGF-EMET-FEFLNLMQNHGLPNVMGVLTHLDKFTDKK--KLRKTKQHLKHRFGTELYHGAKLFK 212 (1068)
Q Consensus 137 ~akvADlVLlVIDas~g~-e~~t-~eiL~~L~~~GlP~vIvVLNKiDlvk~~k--~l~~vkk~Lk~~~~~e~~~~~kVf~ 212 (1068)
.++.+|++|+|+|++.+. .... ..+|..+...++| +|+|+||+|+..+.. ......+.++. .+.++|+
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~-~ilV~NK~DL~~~~~v~~~~~~~~~~~~-------~g~~~~~ 147 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVE-PVIVFNKIDLLNEEEKKELERWISIYRD-------AGYDVLK 147 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCE-EEEEECCGGGCCHHHHHHHHHHHHHHHH-------TTCEEEE
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCC-EEEEEEcccCCCccccHHHHHHHHHHHH-------CCCeEEE
Confidence 478999999999998653 3332 3566667778888 789999999986421 12222222111 1468999
Q ss_pred EecccC
Q 046721 213 LSGLIQ 218 (1068)
Q Consensus 213 ISAl~g 218 (1068)
+||+++
T Consensus 148 ~SA~~g 153 (302)
T 2yv5_A 148 VSAKTG 153 (302)
T ss_dssp CCTTTC
T ss_pred EECCCC
Confidence 999865
No 228
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.85 E-value=0.013 Score=66.55 Aligned_cols=128 Identities=15% Similarity=0.173 Sum_probs=73.4
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccc---------cCCCC---------ce--eccEEEEeC---------------
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYT---------KLKVP---------EV--RGPVTVVSG--------------- 117 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~---------~~~~~---------tt--~~~Iti~~~--------------- 117 (1068)
..+|.+|+|||++|+|||||++.|.+.+. ..... .. +..|.++..
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l 233 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 233 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHH
Confidence 35678999999999999999999988521 00000 00 112222210
Q ss_pred -----CCeeEEEEeCCCChh---HHH-------HH-----HHhcCEEEEEEeCCCCCchhHHHHHHHH-HhCCCCcEEEE
Q 046721 118 -----KKRRLQFVECPNDIN---GMI-------DC-----AKFADLALLLIDASHGFEMETFEFLNLM-QNHGLPNVMGV 176 (1068)
Q Consensus 118 -----~k~rl~fIDtPGdl~---sml-------d~-----akvADlVLlVIDas~g~e~~t~eiL~~L-~~~GlP~vIvV 176 (1068)
......++||.|... ... .+ +...+-+|||+|++.+.+.... +..+ ...|+. +++
T Consensus 234 ~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~--~~~~~~~~g~t--~ii 309 (359)
T 2og2_A 234 KRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGIT--GLI 309 (359)
T ss_dssp HHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCCC--EEE
T ss_pred HHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH--HHHHHHhcCCe--EEE
Confidence 123467899988211 111 11 1235678999998877765432 2333 346775 678
Q ss_pred EeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 177 LTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 177 LNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
++|+|.....-..-.+... + +.+|.++.
T Consensus 310 iThlD~~~~gG~~lsi~~~----~------~~pI~~ig 337 (359)
T 2og2_A 310 LTKLDGSARGGCVVSVVEE----L------GIPVKFIG 337 (359)
T ss_dssp EESCTTCSCTHHHHHHHHH----H------CCCEEEEE
T ss_pred EecCcccccccHHHHHHHH----h------CCCEEEEe
Confidence 9999987533222222221 1 66777776
No 229
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.82 E-value=0.013 Score=64.70 Aligned_cols=127 Identities=19% Similarity=0.137 Sum_probs=70.3
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcccc---------CCCC---------c--eeccEEEEe------------------
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTK---------LKVP---------E--VRGPVTVVS------------------ 116 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~---------~~~~---------t--t~~~Iti~~------------------ 116 (1068)
++.+|+|+|++|+||||++..|.+.... ..+. + ....+.+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999874210 0000 0 001111111
Q ss_pred -CCCeeEEEEeCCCChh----HHH---HH--HHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcH
Q 046721 117 -GKKRRLQFVECPNDIN----GMI---DC--AKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDK 186 (1068)
Q Consensus 117 -~~k~rl~fIDtPGdl~----sml---d~--akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~ 186 (1068)
.....++++||||.+. .|. .. .-.+|.++||+|+..+ ......+..+.. .++-.-+|+||+|.....
T Consensus 177 ~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~~~~ 253 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGDARG 253 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGCSSC
T ss_pred HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCCccH
Confidence 0245799999997321 121 11 1258999999998754 222233333221 233234689999976432
Q ss_pred HHHHHHHHHHHHHhcccccCCCeEEEEe
Q 046721 187 KKLRKTKQHLKHRFGTELYHGAKLFKLS 214 (1068)
Q Consensus 187 k~l~~vkk~Lk~~~~~e~~~~~kVf~IS 214 (1068)
.....+.. .. +.+|.+++
T Consensus 254 g~~~~~~~----~~------~~pi~~i~ 271 (295)
T 1ls1_A 254 GAALSARH----VT------GKPIYFAG 271 (295)
T ss_dssp HHHHHHHH----HH------CCCEEEEC
T ss_pred HHHHHHHH----HH------CcCEEEEe
Confidence 22222221 11 67788776
No 230
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.81 E-value=0.0029 Score=70.11 Aligned_cols=109 Identities=14% Similarity=0.109 Sum_probs=61.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcccc--C-CCC-----cee-------------ccEEEE-------------eCCC
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTK--L-KVP-----EVR-------------GPVTVV-------------SGKK 119 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~--~-~~~-----tt~-------------~~Iti~-------------~~~k 119 (1068)
.++.+|+|+|++|+||||++..|.+.... . .+. +.+ ..+.+. ...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~ 182 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSE 182 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcC
Confidence 35789999999999999999999865321 0 000 000 000000 0124
Q ss_pred eeEEEEeCCCChh----HHHHHHH-----hcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCc
Q 046721 120 RRLQFVECPNDIN----GMIDCAK-----FADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTD 185 (1068)
Q Consensus 120 ~rl~fIDtPGdl~----smld~ak-----vADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~ 185 (1068)
..++|+||||... .|....+ ..|.+++|+|++.+.. ....+...+...++. -+|+||+|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~--giVltk~D~~~~ 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVN--QYIFTKIDETTS 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCC--EEEEECTTTCSC
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCC--EEEEeCCCcccc
Confidence 5799999998322 1222222 2578899999986532 112222222222333 457899998753
No 231
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.79 E-value=0.0015 Score=74.63 Aligned_cols=106 Identities=13% Similarity=0.035 Sum_probs=59.6
Q ss_pred eEEEEeCCC-ChhHHHHHH-HhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHH
Q 046721 121 RLQFVECPN-DINGMIDCA-KFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKH 198 (1068)
Q Consensus 121 rl~fIDtPG-dl~smld~a-kvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~ 198 (1068)
.+.-+++|. +|.+++..+ ..+|+||+|+|++........++.+.+ .+.| +|+|+||+|++........+.+.+..
T Consensus 50 ~~~~v~~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~p-iilV~NK~DLl~~~~~~~~~~~~l~~ 126 (369)
T 3ec1_A 50 EVQDVPLDDDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNP-ILLVGNKADLLPRSVKYPKLLRWMRR 126 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSC-EEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred cccCCcCCHHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCC-EEEEEEChhcCCCccCHHHHHHHHHH
Confidence 344455554 577777766 788899999999865433222333332 2566 88999999998642112233333333
Q ss_pred HhcccccCCCeEEEEecccCCcCCchhhcchHHHHH
Q 046721 199 RFGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFIS 234 (1068)
Q Consensus 199 ~~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~ 234 (1068)
.+.........+|.+||++| .++..|...|.
T Consensus 127 ~~~~~g~~~~~v~~iSA~~g-----~gi~~L~~~I~ 157 (369)
T 3ec1_A 127 MAEELGLCPVDVCLVSAAKG-----IGMAKVMEAIN 157 (369)
T ss_dssp HHHTTTCCCSEEEECBTTTT-----BTHHHHHHHHH
T ss_pred HHHHcCCCcccEEEEECCCC-----CCHHHHHHHHH
Confidence 33222222347999999965 55566666554
No 232
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.72 E-value=0.019 Score=63.70 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=64.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccc---------cCCCC---------ce--eccEEEEeC---------------
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYT---------KLKVP---------EV--RGPVTVVSG--------------- 117 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~---------~~~~~---------tt--~~~Iti~~~--------------- 117 (1068)
..++.+|+++|++|+|||||++.|.+.+. ..... .. +..+.++..
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l 176 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 176 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHH
Confidence 35678999999999999999999988521 00000 00 011222110
Q ss_pred -----CCeeEEEEeCCCCh---hHHHH-------HH-----HhcCEEEEEEeCCCCCchhHHHHHHHH-HhCCCCcEEEE
Q 046721 118 -----KKRRLQFVECPNDI---NGMID-------CA-----KFADLALLLIDASHGFEMETFEFLNLM-QNHGLPNVMGV 176 (1068)
Q Consensus 118 -----~k~rl~fIDtPGdl---~smld-------~a-----kvADlVLlVIDas~g~e~~t~eiL~~L-~~~GlP~vIvV 176 (1068)
......++|+.|-. ..... ++ ...+-+|||+|++.+.+.... +..+ ...|+. +++
T Consensus 177 ~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g~t--~ii 252 (302)
T 3b9q_A 177 KRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGIT--GLI 252 (302)
T ss_dssp HHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCCC--EEE
T ss_pred HHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcCCC--EEE
Confidence 12346789998821 11111 11 235778999998877765432 3333 346775 668
Q ss_pred EeCCCcCCc
Q 046721 177 LTHLDKFTD 185 (1068)
Q Consensus 177 LNKiDlvk~ 185 (1068)
++|+|....
T Consensus 253 iThlD~~~~ 261 (302)
T 3b9q_A 253 LTKLDGSAR 261 (302)
T ss_dssp EECCSSCSC
T ss_pred EeCCCCCCc
Confidence 999998653
No 233
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.63 E-value=0.0046 Score=68.34 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=58.4
Q ss_pred eeEEEEeCCCChhHHH-HHHHhcCEEEEEEeCCCCC-ch-hHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHH
Q 046721 120 RRLQFVECPNDINGMI-DCAKFADLALLLIDASHGF-EM-ETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHL 196 (1068)
Q Consensus 120 ~rl~fIDtPGdl~sml-d~akvADlVLlVIDas~g~-e~-~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~L 196 (1068)
.+++++|+--.+.++. ..++.||++|+|+|++.+. .. ....++..+...++| +|+|+||+|+..+. ......+.+
T Consensus 63 ~~~~iwD~qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~p-iilv~NK~DL~~~~-~v~~~~~~~ 140 (301)
T 1u0l_A 63 GSGVIENVLHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELE-TVMVINKMDLYDED-DLRKVRELE 140 (301)
T ss_dssp SSEEEEEECCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCE-EEEEECCGGGCCHH-HHHHHHHHH
T ss_pred CeEEEEEEccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEeHHHcCCch-hHHHHHHHH
Confidence 4789999843444422 3568999999999998653 22 222455555667888 78999999998632 222222222
Q ss_pred HHHhcccccCCCeEEEEecccC
Q 046721 197 KHRFGTELYHGAKLFKLSGLIQ 218 (1068)
Q Consensus 197 k~~~~~e~~~~~kVf~ISAl~g 218 (1068)
..+. .. ..+|.+||++|
T Consensus 141 -~~~~-~~---~~~~~~SAktg 157 (301)
T 1u0l_A 141 -EIYS-GL---YPIVKTSAKTG 157 (301)
T ss_dssp -HHHT-TT---SCEEECCTTTC
T ss_pred -HHHh-hh---CcEEEEECCCC
Confidence 2221 11 68999999976
No 234
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.63 E-value=0.0015 Score=71.07 Aligned_cols=74 Identities=14% Similarity=0.166 Sum_probs=49.2
Q ss_pred hhHHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeE
Q 046721 131 INGMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKL 210 (1068)
Q Consensus 131 l~smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kV 210 (1068)
+..+...++.+|+||+|+||..+.......+- ++ +.| +|+|+||+|++.+ .......+.+++ .+.++
T Consensus 12 ~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~-~iivlNK~DL~~~-~~~~~~~~~~~~-------~g~~v 78 (262)
T 3cnl_A 12 KRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKE-TIILLNKVDIADE-KTTKKWVEFFKK-------QGKRV 78 (262)
T ss_dssp THHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSE-EEEEEECGGGSCH-HHHHHHHHHHHH-------TTCCE
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCC-cEEEEECccCCCH-HHHHHHHHHHHH-------cCCeE
Confidence 44688899999999999999877654322211 22 777 7889999999863 333333332221 24567
Q ss_pred EEEecccC
Q 046721 211 FKLSGLIQ 218 (1068)
Q Consensus 211 f~ISAl~g 218 (1068)
++||.++
T Consensus 79 -~iSa~~~ 85 (262)
T 3cnl_A 79 -ITTHKGE 85 (262)
T ss_dssp -EECCTTS
T ss_pred -EEECCCC
Confidence 8999865
No 235
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=96.53 E-value=0.0047 Score=69.43 Aligned_cols=66 Identities=12% Similarity=0.165 Sum_probs=42.7
Q ss_pred CCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEEeCC-------CCCchh----HHHHHHHHHh----CCCCcEEEEEeC
Q 046721 118 KKRRLQFVECPND--INGM-IDCAKFADLALLLIDAS-------HGFEME----TFEFLNLMQN----HGLPNVMGVLTH 179 (1068)
Q Consensus 118 ~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVIDas-------~g~e~~----t~eiL~~L~~----~GlP~vIvVLNK 179 (1068)
....+.++||.|. +.++ ......|++||||+|.+ +.-... ....+..+.. .++| +|+|+||
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~-iiL~~NK 243 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS-VILFLNK 243 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCE-EEEEEEC
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCce-EEEEEEC
Confidence 4678999999994 4443 34568899999999876 211111 1223333322 3456 8999999
Q ss_pred CCcCC
Q 046721 180 LDKFT 184 (1068)
Q Consensus 180 iDlvk 184 (1068)
+|+..
T Consensus 244 ~DL~~ 248 (327)
T 3ohm_A 244 KDLLE 248 (327)
T ss_dssp HHHHH
T ss_pred chhhh
Confidence 99874
No 236
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.48 E-value=0.013 Score=64.42 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=49.7
Q ss_pred eEEEEeCCCChh--HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcC
Q 046721 121 RLQFVECPNDIN--GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKF 183 (1068)
Q Consensus 121 rl~fIDtPGdl~--smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlv 183 (1068)
.++|||||..+. .....+..||.+|+|+.+...-.......+..|...|.+.+-+|+|+++.-
T Consensus 203 D~VIIDtpp~~~~~da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 203 DLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp SEEEEECCCTTTCTHHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CEEEEcCCCCcchHHHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 589999987443 356667889999999998765555666788888888988777899999854
No 237
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.46 E-value=0.0026 Score=72.61 Aligned_cols=106 Identities=17% Similarity=0.095 Sum_probs=57.4
Q ss_pred EEEEeCCC-ChhHHHHHH-HhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHH
Q 046721 122 LQFVECPN-DINGMIDCA-KFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHR 199 (1068)
Q Consensus 122 l~fIDtPG-dl~smld~a-kvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~ 199 (1068)
+.-++++. +|.+++..+ ..+|+||+|+|++........++...+ .+.| +|+|+||+|+.........+.+.+...
T Consensus 49 ~~~v~~~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~--~~~p-~ilV~NK~DL~~~~~~~~~~~~~l~~~ 125 (368)
T 3h2y_A 49 IQDVSLTDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV--GNNK-VLLVGNKADLIPKSVKHDKVKHWMRYS 125 (368)
T ss_dssp -------CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS--SSSC-EEEEEECGGGSCTTSCHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh--CCCc-EEEEEEChhcCCcccCHHHHHHHHHHH
Confidence 33344444 577777665 566799999999863211111222222 3667 889999999985321122233333332
Q ss_pred hcccccCCCeEEEEecccCCcCCchhhcchHHHHHH
Q 046721 200 FGTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 200 ~~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
+.........+|.+||++| .++..|...|..
T Consensus 126 ~~~~g~~~~~v~~iSA~~g-----~gi~~L~~~l~~ 156 (368)
T 3h2y_A 126 AKQLGLKPEDVFLISAAKG-----QGIAELADAIEY 156 (368)
T ss_dssp HHHTTCCCSEEEECCTTTC-----TTHHHHHHHHHH
T ss_pred HHHcCCCcccEEEEeCCCC-----cCHHHHHhhhhh
Confidence 2222222347999999965 566666666643
No 238
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.23 E-value=0.0057 Score=68.18 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=50.2
Q ss_pred HHHhcCEEEEEEeCCCCCchhH--HHHHHHHHhCCCCcEEEEEeCCCcCCcHH---HHHHHHHHHHHHhcccccCCCeEE
Q 046721 137 CAKFADLALLLIDASHGFEMET--FEFLNLMQNHGLPNVMGVLTHLDKFTDKK---KLRKTKQHLKHRFGTELYHGAKLF 211 (1068)
Q Consensus 137 ~akvADlVLlVIDas~g~e~~t--~eiL~~L~~~GlP~vIvVLNKiDlvk~~k---~l~~vkk~Lk~~~~~e~~~~~kVf 211 (1068)
.+..+|.||+|+|+..+..... ..+|..+...|+| +|+|+||+|+..+.. .+..+.+.+... +.+++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~-~vivlnK~DL~~~~~~~~~~~~~~~~y~~~-------g~~v~ 154 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQ-PIICITKMDLIEDQDTEDTIQAYAEDYRNI-------GYDVY 154 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCE-EEEEEECGGGCCCHHHHHHHHHHHHHHHHH-------TCCEE
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEECCccCchhhhHHHHHHHHHHHHhC-------CCeEE
Confidence 4789999999999986544333 2455556678998 688999999997532 133333332221 46899
Q ss_pred EEecccC
Q 046721 212 KLSGLIQ 218 (1068)
Q Consensus 212 ~ISAl~g 218 (1068)
++||.++
T Consensus 155 ~~sa~~~ 161 (307)
T 1t9h_A 155 LTSSKDQ 161 (307)
T ss_dssp ECCHHHH
T ss_pred EEecCCC
Confidence 9998754
No 239
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.22 E-value=0.015 Score=61.04 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=47.4
Q ss_pred eeEEEEeCCCChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCC--CCcEEEEEeCCCcC
Q 046721 120 RRLQFVECPNDING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHG--LPNVMGVLTHLDKF 183 (1068)
Q Consensus 120 ~rl~fIDtPGdl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~G--lP~vIvVLNKiDlv 183 (1068)
..+++||||+.+.. +..++..||.+|+++.++..--.....++..+...| ...+-+|+|+++.-
T Consensus 119 yD~viiD~p~~~~~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 119 YDYIIVDFGASIDHVGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp CSEEEEEEESSCCTTHHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred CCEEEEeCCCCCchHHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 46899999875543 666788999999999876433334456788888777 44578899999864
No 240
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.20 E-value=0.0038 Score=70.88 Aligned_cols=113 Identities=12% Similarity=0.144 Sum_probs=66.5
Q ss_pred CCeeEEEEeCCC--ChhHH-HHHHHhcCEEEEEEeCCCCC---------c-h-hHHHHHHHHHh----CCCCcEEEEEeC
Q 046721 118 KKRRLQFVECPN--DINGM-IDCAKFADLALLLIDASHGF---------E-M-ETFEFLNLMQN----HGLPNVMGVLTH 179 (1068)
Q Consensus 118 ~k~rl~fIDtPG--dl~sm-ld~akvADlVLlVIDas~g~---------e-~-~t~eiL~~L~~----~GlP~vIvVLNK 179 (1068)
....+.++||+| .+..+ ......|++||||+|.+..- . . +....+..+.. .++| +|+|+||
T Consensus 191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p-iiLv~NK 269 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS-IILFLNK 269 (353)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE-EEEEEEC
T ss_pred CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc-EEEEEEC
Confidence 477899999999 35553 34568999999999998621 1 1 11233333332 3566 8999999
Q ss_pred CCcCCcH----------------HHHHHHHHHHHHHhcccc----cCCCeEEEEecccCCcCCchhhcchHHHHHHh
Q 046721 180 LDKFTDK----------------KKLRKTKQHLKHRFGTEL----YHGAKLFKLSGLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 180 iDlvk~~----------------k~l~~vkk~Lk~~~~~e~----~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~ 236 (1068)
+|+.... .......+.+...|.... .....++.+||+++ ..+..+...+...
T Consensus 270 ~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~-----~nV~~vF~~v~~~ 341 (353)
T 1cip_A 270 KDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT-----KNVQFVFDAVTDV 341 (353)
T ss_dssp HHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH-----HHHHHHHHHHHHH
T ss_pred cCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc-----hhHHHHHHHHHHH
Confidence 9986311 012334444433322211 13456788999854 5565555555443
No 241
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.15 E-value=0.0037 Score=71.19 Aligned_cols=112 Identities=14% Similarity=0.184 Sum_probs=62.1
Q ss_pred CCeeEEEEeCCCC--hhHH-HHHHHhcCEEEEEEeCCCC---------C-ch-hHHHHHHHHHh----CCCCcEEEEEeC
Q 046721 118 KKRRLQFVECPND--INGM-IDCAKFADLALLLIDASHG---------F-EM-ETFEFLNLMQN----HGLPNVMGVLTH 179 (1068)
Q Consensus 118 ~k~rl~fIDtPGd--l~sm-ld~akvADlVLlVIDas~g---------~-e~-~t~eiL~~L~~----~GlP~vIvVLNK 179 (1068)
....+.++||+|. +..+ ..+...+++||||+|.+.- . .. +...++..+.. .++| +|+|+||
T Consensus 199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~p-iILv~NK 277 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS-IILFLNK 277 (362)
T ss_dssp TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE-EEEEEEC
T ss_pred CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCC-EEEEEEC
Confidence 4678999999993 4443 3345789999999999862 1 11 11223333322 3566 8999999
Q ss_pred CCcCCcH-----------------HHHHHHHHHHHHHhcc--cc--cCCCeEEEEecccCCcCCchhhcchHHHHHH
Q 046721 180 LDKFTDK-----------------KKLRKTKQHLKHRFGT--EL--YHGAKLFKLSGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 180 iDlvk~~-----------------k~l~~vkk~Lk~~~~~--e~--~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
+|+.... .......+.+...|.. .. .....++.+||+++ ..+..+...+..
T Consensus 278 ~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~-----~nV~~vF~~v~~ 349 (362)
T 1zcb_A 278 TDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT-----ENIRLVFRDVKD 349 (362)
T ss_dssp HHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH-----HHHHHHHHHHHH
T ss_pred hhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc-----hhHHHHHHHHHH
Confidence 9986311 1123344433333311 11 12456788999854 555555544433
No 242
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.13 E-value=0.013 Score=61.12 Aligned_cols=106 Identities=14% Similarity=0.069 Sum_probs=67.0
Q ss_pred EEEEEC-CCCCChhHHHHHHHhccccCC-CCce----ec-----------cEEEEe-------CCCeeEEEEeCCCC-hh
Q 046721 78 VVVVQG-PPQVGKSLLIKCLIKHYTKLK-VPEV----RG-----------PVTVVS-------GKKRRLQFVECPND-IN 132 (1068)
Q Consensus 78 ~VaVVG-~pnvGKSTLIn~L~~~~~~~~-~~tt----~~-----------~Iti~~-------~~k~rl~fIDtPGd-l~ 132 (1068)
+|+|++ -.|+||||+.-.|........ +--. .+ +..+.. .....+++||||+. +.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~~ 81 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQGETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPED 81 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCCSS
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcCCEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCcCc
Confidence 577775 589999998877765432110 0000 00 001111 12467999999876 54
Q ss_pred H-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhC-CCCcEEEEEeCCCcCC
Q 046721 133 G-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNH-GLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 133 s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~-GlP~vIvVLNKiDlvk 184 (1068)
. +..++..||.||+++.++..--.....++..+... +.+ +.+|+|+++.-.
T Consensus 82 ~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~ 134 (209)
T 3cwq_A 82 EDLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYP 134 (209)
T ss_dssp SHHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTT
T ss_pred HHHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCcc
Confidence 3 66778999999999987643333444677777763 666 788999998653
No 243
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.08 E-value=0.024 Score=60.48 Aligned_cols=66 Identities=9% Similarity=0.138 Sum_probs=48.5
Q ss_pred CeeEEEEeCCCChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC
Q 046721 119 KRRLQFVECPNDING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 119 k~rl~fIDtPGdl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk 184 (1068)
...+++||||+.+.. +..++..||.||+|+.++..--.....++..+...|++.+-+|+|+++...
T Consensus 110 ~yD~viiD~~~~~~~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 176 (263)
T 1hyq_A 110 STDILLLDAPAGLERSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLG 176 (263)
T ss_dssp TCSEEEEECCSSSSHHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTT
T ss_pred hCCEEEEeCCCCCChHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCccc
Confidence 357999999875554 667788999999999876432233446777777778876778999998654
No 244
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.02 E-value=0.044 Score=58.64 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=45.3
Q ss_pred CeeEEEEeCCCChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCC-cEEEEEeCCCc
Q 046721 119 KRRLQFVECPNDING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLP-NVMGVLTHLDK 182 (1068)
Q Consensus 119 k~rl~fIDtPGdl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP-~vIvVLNKiDl 182 (1068)
...+++||||+.+.. +..++..||.||+++.++..--.....++..+...+.. ++.+|+|++..
T Consensus 144 ~yD~viiD~pp~~~~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 144 KYDYIVIDTNPSLDVTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp TCSEEEEEECSSCSHHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred CCCEEEEECcCCccHHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 356899999886654 56667889999999988643223334677777776532 36789999843
No 245
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=95.86 E-value=0.026 Score=59.79 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=45.3
Q ss_pred CeeEEEEeCCCChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCC--------CcEEEEEeCCCc
Q 046721 119 KRRLQFVECPNDING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGL--------PNVMGVLTHLDK 182 (1068)
Q Consensus 119 k~rl~fIDtPGdl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~Gl--------P~vIvVLNKiDl 182 (1068)
...+++||||+.+.. +..++..||.||+|+.++..--.....++..+...+. ..+.+|+|+++.
T Consensus 113 ~yD~viiD~p~~~~~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSSHHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCCHHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 568999999886654 6667789999999998764322233456666665542 356789999874
No 246
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.82 E-value=0.051 Score=59.09 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=47.3
Q ss_pred eeEEEEeCCCChh--HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCc
Q 046721 120 RRLQFVECPNDIN--GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDK 182 (1068)
Q Consensus 120 ~rl~fIDtPGdl~--smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDl 182 (1068)
..++|||||+.+. .....+..||.+|+|+.+...--.....++..+...|++.+-+|+|++|.
T Consensus 192 yD~VIIDtpp~~~~~d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPK 256 (271)
T ss_dssp CSEEEEECCCTTTCSHHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC
T ss_pred CCEEEEeCCCCchHHHHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcC
Confidence 3689999987443 34556688999999999876555556678888888888744478999985
No 247
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.55 E-value=0.046 Score=60.32 Aligned_cols=63 Identities=14% Similarity=0.097 Sum_probs=48.2
Q ss_pred eEEEEeCCCChh--HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcC
Q 046721 121 RLQFVECPNDIN--GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKF 183 (1068)
Q Consensus 121 rl~fIDtPGdl~--smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlv 183 (1068)
.++|||||+.+. ...-.+..||.+|+|+.+..........++..+...|++.+-+|+|++|.-
T Consensus 215 D~VIIDtpp~~~~~d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 215 DLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp SEEEEECCCTTTCTHHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CEEEEcCCCCchhHHHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 589999987543 344456889999999998766556667788888888887555789999854
No 248
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.34 E-value=0.036 Score=60.77 Aligned_cols=64 Identities=11% Similarity=0.063 Sum_probs=42.8
Q ss_pred CeeEEEEeCCCChh--HHHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHh----CCCCcEEEEEeCCCc
Q 046721 119 KRRLQFVECPNDIN--GMIDCAKFADLALLLIDASHGFEMETFEFLNLMQN----HGLPNVMGVLTHLDK 182 (1068)
Q Consensus 119 k~rl~fIDtPGdl~--smld~akvADlVLlVIDas~g~e~~t~eiL~~L~~----~GlP~vIvVLNKiDl 182 (1068)
...+++||||+.+. .+..++..||.||+|+.++..--.....++..+.. .+++.+-+|+|+++.
T Consensus 156 ~yD~ViiD~p~~~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGGFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCGGGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchHHHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 35789999987543 34566789999999998753222233456676665 344423379999984
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.31 E-value=0.041 Score=57.39 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
++.+|+|+|++|+|||||++.|++.+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999864
No 250
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.37 E-value=0.068 Score=60.72 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=44.3
Q ss_pred HHhcCEEEEEEeCCCCC-chh-HHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHHHHHHHHHHHhcccccCCCeEEEEec
Q 046721 138 AKFADLALLLIDASHGF-EME-TFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLRKTKQHLKHRFGTELYHGAKLFKLSG 215 (1068)
Q Consensus 138 akvADlVLlVIDas~g~-e~~-t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~~vkk~Lk~~~~~e~~~~~kVf~ISA 215 (1068)
+..+|.|++|.. ..+. ... ...+|..+...|+| +|+|+||+|++.+. ....+.+ +...+.. .+.+++++||
T Consensus 128 ~anvD~v~iv~a-~~P~~~~~~i~r~L~~a~~~~~~-~iivlNK~DL~~~~-~~~~~~~-~~~~y~~---~G~~v~~~Sa 200 (358)
T 2rcn_A 128 AANIDQIVIVSA-ILPELSLNIIDRYLVGCETLQVE-PLIVLNKIDLLDDE-GMDFVNE-QMDIYRN---IGYRVLMVSS 200 (358)
T ss_dssp EECCCEEEEEEE-STTTCCHHHHHHHHHHHHHHTCE-EEEEEECGGGCCHH-HHHHHHH-HHHHHHT---TTCCEEECBT
T ss_pred HhcCCEEEEEEe-CCCCCCHHHHHHHHHHHHhcCCC-EEEEEECccCCCch-hHHHHHH-HHHHHHh---CCCcEEEEec
Confidence 578999997754 3332 221 12455555668998 68899999999743 2111222 2222221 3567999999
Q ss_pred ccC
Q 046721 216 LIQ 218 (1068)
Q Consensus 216 l~g 218 (1068)
.++
T Consensus 201 ~~~ 203 (358)
T 2rcn_A 201 HTQ 203 (358)
T ss_dssp TTT
T ss_pred CCC
Confidence 864
No 251
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.17 E-value=0.019 Score=59.24 Aligned_cols=26 Identities=42% Similarity=0.609 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+...|+|+|++|+|||||++.|++.+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34679999999999999999999864
No 252
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=94.17 E-value=0.06 Score=62.13 Aligned_cols=66 Identities=14% Similarity=0.268 Sum_probs=44.0
Q ss_pred CCeeEEEEeCCC--ChhHH-HHHHHhcCEEEEEEeCCC----------CCchh-HHHHHHHHHh----CCCCcEEEEEeC
Q 046721 118 KKRRLQFVECPN--DINGM-IDCAKFADLALLLIDASH----------GFEME-TFEFLNLMQN----HGLPNVMGVLTH 179 (1068)
Q Consensus 118 ~k~rl~fIDtPG--dl~sm-ld~akvADlVLlVIDas~----------g~e~~-t~eiL~~L~~----~GlP~vIvVLNK 179 (1068)
....+.++||.| .+.++ ......|++||||+|.+. .-... ....+..+.. .++| +|+|+||
T Consensus 215 ~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~p-iiLvgNK 293 (402)
T 1azs_C 215 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS-VILFLNK 293 (402)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCC-EEEEEEC
T ss_pred CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCe-EEEEEEC
Confidence 467899999999 35553 345688999999999985 11111 1123333332 2456 8999999
Q ss_pred CCcCC
Q 046721 180 LDKFT 184 (1068)
Q Consensus 180 iDlvk 184 (1068)
+|+..
T Consensus 294 ~DL~~ 298 (402)
T 1azs_C 294 QDLLA 298 (402)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 99863
No 253
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=94.11 E-value=0.4 Score=50.75 Aligned_cols=90 Identities=14% Similarity=0.070 Sum_probs=51.4
Q ss_pred HHHHhcCEEEEEEeCCCCCchhH-HHH---HHHHHh----CCCCcEEEEEeCC-CcCCcHHHHHHHHHHHHHHhcccccC
Q 046721 136 DCAKFADLALLLIDASHGFEMET-FEF---LNLMQN----HGLPNVMGVLTHL-DKFTDKKKLRKTKQHLKHRFGTELYH 206 (1068)
Q Consensus 136 d~akvADlVLlVIDas~g~e~~t-~ei---L~~L~~----~GlP~vIvVLNKi-Dlvk~~k~l~~vkk~Lk~~~~~e~~~ 206 (1068)
.++..+|.||||||++..--.+. .++ ..+|.. .|.| ++|..||. |+.. .-...++.+.|. + +...-
T Consensus 121 ~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gap-LLVlANKqqDlp~-Ams~~EI~e~L~--L-~~l~R 195 (227)
T 3l82_B 121 KVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVK-RMPCFYLAHELH--L-NLLNH 195 (227)
T ss_dssp HHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSC-EEEEEEESSTTSC-BCCHHHHHHHTT--G-GGGCS
T ss_pred HHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCe-EEEEeCCCcCccC-CCCHHHHHHHcC--C-cCCCC
Confidence 45789999999999985421122 233 444422 4777 78788985 5642 111223333321 1 11223
Q ss_pred CCeEEEEecccCCcCCchhhcchHHHHHH
Q 046721 207 GAKLFKLSGLIQGKYTKKDIGNLAEFISV 235 (1068)
Q Consensus 207 ~~kVf~ISAl~g~~y~~~ei~nLlR~I~~ 235 (1068)
...|.++||++| +++..-+.+|+.
T Consensus 196 ~W~Iq~csA~TG-----eGL~EGLdWL~~ 219 (227)
T 3l82_B 196 PWLVQDTEAETL-----TGFLNGIEWILE 219 (227)
T ss_dssp CEEEEEEETTTC-----TTHHHHHHHHTT
T ss_pred CEEEEEeECCCC-----cCHHHHHHHHHH
Confidence 557999999976 555555555543
No 254
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.03 E-value=0.022 Score=57.91 Aligned_cols=25 Identities=40% Similarity=0.679 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
|.+|+|+|++|+|||||++.|++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999999875
No 255
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.89 E-value=0.033 Score=57.60 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=24.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
.++.+|+|+|++|+|||||++.|.+...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999999998753
No 256
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=93.83 E-value=0.1 Score=61.03 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHH
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLI 97 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~ 97 (1068)
.|-.+|+|+|++++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 456789999999999999999775
No 257
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.76 E-value=0.11 Score=60.07 Aligned_cols=87 Identities=18% Similarity=0.222 Sum_probs=49.9
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCChhHHHHHHH--hcCEEEEEEeC
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPNDINGMIDCAK--FADLALLLIDA 150 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGdl~smld~ak--vADlVLlVIDa 150 (1068)
.+.|.+|+|+|+||+|||||.+.|..... +.++.. |.-+.+..+...+. ......+|||+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~----------~~~i~~--------D~~~~~~~~~~~~~~~l~~g~~vIiD~ 316 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAG----------YVHVNR--------DTLGSWQRCVSSCQAALRQGKRVVIDN 316 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGT----------CEECCG--------GGSCSHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcC----------cEEEcc--------chHHHHHHHHHHHHHHHhcCCcEEEeC
Confidence 45678999999999999999999987531 111111 11122332222221 11122355888
Q ss_pred CCCCchhHHHHHHHHHhCCCCcEEEEE
Q 046721 151 SHGFEMETFEFLNLMQNHGLPNVMGVL 177 (1068)
Q Consensus 151 s~g~e~~t~eiL~~L~~~GlP~vIvVL 177 (1068)
+......-..++.++...|.+.+++.+
T Consensus 317 ~~~~~~~r~~~~~~~~~~~~~~~~v~l 343 (416)
T 3zvl_A 317 TNPDVPSRARYIQCAKDAGVPCRCFNF 343 (416)
T ss_dssp CCCSHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEEE
Confidence 765444445677777788888444333
No 258
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.74 E-value=0.014 Score=64.97 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+++|+|++|+|||||+|+|++..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 589999999999999999999863
No 259
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.72 E-value=0.037 Score=56.41 Aligned_cols=26 Identities=23% Similarity=0.554 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+..+|+|+|++|+|||||++.|.+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999864
No 260
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.71 E-value=0.035 Score=56.15 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=22.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+|+|+|++|+|||||++.|.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999999864
No 261
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.64 E-value=0.1 Score=59.23 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+..+|+|+|++|+|||||+++|++..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34589999999999999999999874
No 262
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=93.48 E-value=0.094 Score=57.07 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=26.7
Q ss_pred eeEEEEeCCCChhH-HHHHHHhcCEEEEEEeCC
Q 046721 120 RRLQFVECPNDING-MIDCAKFADLALLLIDAS 151 (1068)
Q Consensus 120 ~rl~fIDtPGdl~s-mld~akvADlVLlVIDas 151 (1068)
..++|||||+.+.. +..++..||.||+++.++
T Consensus 104 yD~viiD~p~~~~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 104 CDFILIDTPGGDSAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp CSEEEEECCSSCCHHHHHHHHTCSEEEEEEESS
T ss_pred CCEEEEcCCCCccHHHHHHHHHCCEEEEEEcCC
Confidence 46999999886654 677789999999999876
No 263
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.46 E-value=0.042 Score=55.40 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
+..+|+|+|++|+|||||++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999886
No 264
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.41 E-value=0.038 Score=57.14 Aligned_cols=25 Identities=44% Similarity=0.788 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
--+++|+|++|+|||||++.|.+-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999999875
No 265
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.32 E-value=0.046 Score=56.65 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.++.+|+|+|++|+|||||++.|.+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 346789999999999999999999875
No 266
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.23 E-value=0.15 Score=50.14 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+..|.|.|++|+|||+|+++|....
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999998874
No 267
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=93.17 E-value=0.056 Score=61.32 Aligned_cols=65 Identities=9% Similarity=0.067 Sum_probs=40.9
Q ss_pred CCeeEEEEeCCC--ChhHHH-HHHHhcCEEEEEEeCCC-------CCchhH----HHHHHHHHh----CCCCcEEEEEeC
Q 046721 118 KKRRLQFVECPN--DINGMI-DCAKFADLALLLIDASH-------GFEMET----FEFLNLMQN----HGLPNVMGVLTH 179 (1068)
Q Consensus 118 ~k~rl~fIDtPG--dl~sml-d~akvADlVLlVIDas~-------g~e~~t----~eiL~~L~~----~GlP~vIvVLNK 179 (1068)
....+.++||+| .+.++. .....|+++|||+|.+. .-.... ...+..+.. .++| +|+|+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE-EEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe-EEEEEEC
Confidence 356899999999 455543 34588999999999871 111111 123333332 3566 8999999
Q ss_pred CCcC
Q 046721 180 LDKF 183 (1068)
Q Consensus 180 iDlv 183 (1068)
+|+.
T Consensus 260 ~DL~ 263 (354)
T 2xtz_A 260 FDIF 263 (354)
T ss_dssp HHHH
T ss_pred cchh
Confidence 9985
No 268
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.04 E-value=0.049 Score=56.01 Aligned_cols=27 Identities=30% Similarity=0.624 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.++.+|+|+|++|+|||||++.|.+..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999874
No 269
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.00 E-value=0.049 Score=55.52 Aligned_cols=23 Identities=30% Similarity=0.709 Sum_probs=21.2
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.|+|+|++|+|||||++.|++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999874
No 270
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.97 E-value=0.043 Score=57.49 Aligned_cols=27 Identities=41% Similarity=0.678 Sum_probs=23.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+..+|+|+|++|+|||||++.|++.+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345689999999999999999999865
No 271
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.85 E-value=0.06 Score=54.81 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
++.+|+|+|++|+|||||++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999999875
No 272
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.84 E-value=0.66 Score=47.33 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=22.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHh
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIK 98 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~ 98 (1068)
++-.+++|+|++|+|||||+..|++
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999999987
No 273
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.62 E-value=0.065 Score=54.99 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=23.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.++.+|+|+|++|+|||||++.|.+..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 346789999999999999999998764
No 274
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.53 E-value=0.066 Score=56.50 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+-.+|+|+|++|+|||||++.|.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999999875
No 275
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.44 E-value=0.058 Score=57.45 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
--+++|+|++|+|||||++.|.+-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3489999999999999999999874
No 276
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=92.39 E-value=0.1 Score=58.93 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=45.3
Q ss_pred EeCCCeeEEEEeCCCC--hhHHH-HHHHhcCEEEEEEeCCC---------CCc-h-hHHHHHH-HHHh---CCCCcEEEE
Q 046721 115 VSGKKRRLQFVECPND--INGMI-DCAKFADLALLLIDASH---------GFE-M-ETFEFLN-LMQN---HGLPNVMGV 176 (1068)
Q Consensus 115 ~~~~k~rl~fIDtPGd--l~sml-d~akvADlVLlVIDas~---------g~e-~-~t~eiL~-~L~~---~GlP~vIvV 176 (1068)
+...+..+.++||.|. +.++. .....|++||||+|.+. ... . +....+. ++.. .++| +|+|
T Consensus 156 ~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~p-iiLv 234 (340)
T 4fid_A 156 FVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAV-KLIF 234 (340)
T ss_dssp EESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSE-EEEE
T ss_pred EEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCe-EEEE
Confidence 3446789999999994 45543 45689999999999972 111 1 1112233 3332 3556 8999
Q ss_pred EeCCCcCC
Q 046721 177 LTHLDKFT 184 (1068)
Q Consensus 177 LNKiDlvk 184 (1068)
+||+|+..
T Consensus 235 ~NK~DL~~ 242 (340)
T 4fid_A 235 LNKMDLFE 242 (340)
T ss_dssp EECHHHHH
T ss_pred EECchhhh
Confidence 99999874
No 277
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.37 E-value=0.076 Score=59.11 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=24.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.++.+|+|+|++|+|||||++.|.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 567899999999999999999999875
No 278
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.28 E-value=0.063 Score=61.00 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
.+++|+|++|+|||||+|+|++...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 5899999999999999999998643
No 279
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.18 E-value=0.085 Score=54.07 Aligned_cols=27 Identities=30% Similarity=0.250 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.++.+|+|+|++|+|||||.+.|.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998875
No 280
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.14 E-value=0.085 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIK 98 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~ 98 (1068)
|.+|+|+|+||+||||+.+.|..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 67899999999999999999987
No 281
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.11 E-value=0.063 Score=56.73 Aligned_cols=24 Identities=29% Similarity=0.187 Sum_probs=22.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.+-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999999874
No 282
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.01 E-value=0.095 Score=58.67 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.8
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
...|.+|+|+|++|+|||||++.|.+..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999998764
No 283
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.00 E-value=0.072 Score=53.49 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=20.9
Q ss_pred CCeEEEEECCCCCChhHHHHHHHh
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIK 98 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~ 98 (1068)
+.-+|+++|++|+|||||++.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 456899999999999999998654
No 284
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.91 E-value=0.074 Score=57.63 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
--+++|+|++|+|||||++.|.+-.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999999864
No 285
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.86 E-value=0.079 Score=54.48 Aligned_cols=27 Identities=37% Similarity=0.527 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.++.+|+|+|++|+|||||++.|....
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456789999999999999999998765
No 286
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.86 E-value=0.072 Score=62.40 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=54.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccccCCCCcee---ccEEE-EeCCCeeEEEEeCCCC--h--hH--H-------HH
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVR---GPVTV-VSGKKRRLQFVECPND--I--NG--M-------ID 136 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~---~~Iti-~~~~k~rl~fIDtPGd--l--~s--m-------ld 136 (1068)
..|.+|.++|+||+||||+.+.|..........+.. +.+.. ..+......|+|+.|. + .. + ..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999998763211111100 00000 0011122345677663 1 11 1 12
Q ss_pred HHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCC
Q 046721 137 CAKFADLALLLIDASHGFEMETFEFLNLMQNHGLP 171 (1068)
Q Consensus 137 ~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP 171 (1068)
.+..+...++|+|++..-...-..++..+...|.+
T Consensus 117 ~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~ 151 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYK 151 (469)
T ss_dssp HHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCE
T ss_pred HHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCc
Confidence 22336788999999865333333556667777765
No 287
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.82 E-value=0.086 Score=56.44 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=22.4
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.|-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999999874
No 288
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.79 E-value=0.077 Score=57.25 Aligned_cols=24 Identities=33% Similarity=0.492 Sum_probs=22.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.|-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999874
No 289
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.72 E-value=0.086 Score=55.86 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
|.+|+|+|++|+|||||++.|...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999999954
No 290
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.71 E-value=0.08 Score=57.93 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=22.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.+-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999999864
No 291
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=91.66 E-value=0.94 Score=50.11 Aligned_cols=96 Identities=13% Similarity=0.048 Sum_probs=54.1
Q ss_pred hhHHH-HHHHhcCEEEEEEeCCCCCchhHH----HHHHHHH----hCCCCcEEEEEeC-CCcCCcHHHHHHHHHHHHHHh
Q 046721 131 INGMI-DCAKFADLALLLIDASHGFEMETF----EFLNLMQ----NHGLPNVMGVLTH-LDKFTDKKKLRKTKQHLKHRF 200 (1068)
Q Consensus 131 l~sml-d~akvADlVLlVIDas~g~e~~t~----eiL~~L~----~~GlP~vIvVLNK-iDlvk~~k~l~~vkk~Lk~~~ 200 (1068)
+..+. .++..+|.||||||++..--.+.. ++..+|. -.|.| ++|..|| -|+.. .-...++.+.|. +
T Consensus 200 lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~-Ams~~EI~e~L~--L 275 (312)
T 3l2o_B 200 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVK-RMPCFYLAHELH--L 275 (312)
T ss_dssp CCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSC-BCCHHHHHHHTT--G
T ss_pred HHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccC-CCCHHHHHHHcC--C
Confidence 33444 456899999999999754211111 2334442 25888 7878896 47643 111223333321 1
Q ss_pred cccccCCCeEEEEecccCCcCCchhhcchHHHHHHh
Q 046721 201 GTELYHGAKLFKLSGLIQGKYTKKDIGNLAEFISVM 236 (1068)
Q Consensus 201 ~~e~~~~~kVf~ISAl~g~~y~~~ei~nLlR~I~~~ 236 (1068)
+.....-.|.++||++| +++.+-+..|+..
T Consensus 276 -~~l~r~W~Iq~csA~tG-----eGL~EGldWL~~~ 305 (312)
T 3l2o_B 276 -NLLNHPWLVQDTEAETL-----TGFLNGIEWILEE 305 (312)
T ss_dssp -GGGCSCEEEEEEETTTC-----TTHHHHHHHHHHH
T ss_pred -ccCCCcEEEEecccCCC-----cCHHHHHHHHHHH
Confidence 11223557999999976 5666666666544
No 292
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.65 E-value=0.082 Score=55.34 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=21.4
Q ss_pred eEEEEECCCCCChhHHHHHHHhc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
-+++|+|++|+|||||++.|.+-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999986
No 293
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.60 E-value=0.083 Score=57.43 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=22.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.+-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 489999999999999999999864
No 294
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.60 E-value=0.084 Score=56.31 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=22.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.+-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999999875
No 295
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.54 E-value=0.18 Score=52.61 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=47.5
Q ss_pred CeeEEEEeCCCChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCC
Q 046721 119 KRRLQFVECPNDING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLD 181 (1068)
Q Consensus 119 k~rl~fIDtPGdl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiD 181 (1068)
...+++||||+.+.. +..++..||.||+|+.++..--.....++..+...|++.+.+|+|+.+
T Consensus 131 ~yD~viiD~pp~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEHLTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp CCSEEEEEECTTCTTCCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred CCCEEEEeCCCcccHHHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 457899999876554 566778999999999886322223345677777788888889999987
No 296
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.46 E-value=0.09 Score=55.73 Aligned_cols=24 Identities=21% Similarity=0.413 Sum_probs=22.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.+-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999874
No 297
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.44 E-value=0.089 Score=56.17 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=22.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.+-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999874
No 298
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.40 E-value=0.12 Score=51.78 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
--+|+++|+.|+|||||++.|.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3589999999999999999999875
No 299
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.40 E-value=0.11 Score=55.04 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.++.+|+|+|++|+|||||++.|.+..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998864
No 300
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.39 E-value=0.092 Score=56.12 Aligned_cols=26 Identities=31% Similarity=0.591 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+--+++|+|++|+|||||++.|.+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999874
No 301
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.36 E-value=0.092 Score=57.04 Aligned_cols=25 Identities=44% Similarity=0.590 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
--+++|+|++|+|||||++.|.+-.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3589999999999999999999874
No 302
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.36 E-value=0.091 Score=56.40 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=22.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.+-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999999874
No 303
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.31 E-value=0.099 Score=56.15 Aligned_cols=23 Identities=39% Similarity=0.390 Sum_probs=21.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
-+++|+|++|+|||||++.|.+-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999996
No 304
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.30 E-value=0.087 Score=58.09 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-.+++++|++|+|||||+|+|.+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 3589999999999999999999863
No 305
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=91.26 E-value=0.2 Score=52.11 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=48.7
Q ss_pred eeEEEEeCCCChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCC
Q 046721 120 RRLQFVECPNDING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 120 ~rl~fIDtPGdl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk 184 (1068)
..+++||||+.+.. +..++..||.+|+|+.++..--.....++..+...|++.+-+|+|+++...
T Consensus 112 yD~viiD~~~~~~~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 112 FDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp CSEEEEECCSSSSHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred CCEEEEECCCCcCHHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCccc
Confidence 46899999876554 677789999999999876432233446777777778877778999998643
No 306
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.24 E-value=0.096 Score=56.62 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=22.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.+-.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999999874
No 307
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.22 E-value=0.1 Score=56.66 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=21.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
-+++|+|++|+|||||++.|.+-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999996
No 308
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.18 E-value=0.097 Score=51.80 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+.+|+|+|++|+|||||.+.|.+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998763
No 309
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.16 E-value=0.085 Score=55.54 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.8
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.+-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999874
No 310
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.08 E-value=0.11 Score=52.39 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.3
Q ss_pred eEEEEECCCCCChhHHHHHHHh
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIK 98 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~ 98 (1068)
.+|+|+|++|+|||||++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999986
No 311
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.00 E-value=0.11 Score=56.09 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=22.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.|-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999999874
No 312
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.99 E-value=0.1 Score=56.41 Aligned_cols=25 Identities=28% Similarity=0.382 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
--+++|+|++|+|||||++.|.+-.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3589999999999999999999874
No 313
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=90.92 E-value=0.16 Score=50.50 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
+..+|+|+|++|+|||||++.|.+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999875
No 314
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.92 E-value=0.11 Score=56.72 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
--+++|+|++|+|||||++.|.+-.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999999874
No 315
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.91 E-value=0.31 Score=47.87 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+..|.|.|++|+|||+|++.|....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999998764
No 316
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.90 E-value=0.11 Score=56.97 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=22.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.+-.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999874
No 317
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.77 E-value=0.091 Score=55.06 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=17.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHH-hcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLI-KHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~-~~~ 100 (1068)
+..+|+|+|++|+|||||++.|. +..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34689999999999999999999 764
No 318
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.71 E-value=0.11 Score=55.88 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=22.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.+-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999874
No 319
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.71 E-value=0.14 Score=51.50 Aligned_cols=27 Identities=30% Similarity=0.565 Sum_probs=23.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
..|.+|+|+|++|+||||+.+.|....
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999998653
No 320
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.71 E-value=0.11 Score=56.24 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=22.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.|-.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999874
No 321
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=90.66 E-value=0.89 Score=50.73 Aligned_cols=28 Identities=7% Similarity=0.107 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+.|..|.|.|+||+|||++++.++...
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3567889999999999999999998874
No 322
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.66 E-value=0.12 Score=52.87 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.|.+|+|+|++|+|||||.+.|.+..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998753
No 323
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.64 E-value=0.18 Score=50.78 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=24.2
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
..++.+|+|+|++|+||||+++.|....
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999998764
No 324
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.63 E-value=0.16 Score=55.94 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=24.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
+.|.+|+|+|++|+|||||++.|.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5688999999999999999999988753
No 325
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.55 E-value=0.12 Score=53.43 Aligned_cols=23 Identities=43% Similarity=0.758 Sum_probs=20.4
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.|+|+||+|+|||||++.|+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999998764
No 326
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.52 E-value=0.94 Score=46.97 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=20.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
+-.+++|+|+||+|||||+..|+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999998777654
No 327
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.48 E-value=0.13 Score=56.90 Aligned_cols=23 Identities=30% Similarity=0.634 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
-.+++++|++|+|||||+|+|+ .
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-S
T ss_pred CcEEEEECCCCCCHHHHHHHHH-H
Confidence 3689999999999999999999 5
No 328
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.48 E-value=0.86 Score=52.43 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=20.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHh
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIK 98 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~ 98 (1068)
+--+++|+|++++|||||+..|+-
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Confidence 345899999999999999997753
No 329
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.48 E-value=1.4 Score=52.21 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=23.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+++..|.|.|+||+|||||+++|....
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998764
No 330
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.35 E-value=0.17 Score=51.85 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=24.6
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-.++.+|+|+|.+|+|||||++.|.+.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3567899999999999999999998864
No 331
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.31 E-value=0.15 Score=56.41 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=24.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.++.+|+|+|++|+|||||++.|.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999864
No 332
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.24 E-value=0.16 Score=50.38 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
|.+|.|+|++|+||||+.+.|....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998753
No 333
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.22 E-value=1.2 Score=44.73 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEECCCCCChhHHHHHHHhcc
Q 046721 79 VVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 79 VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
|.|.|++|+|||+|++.|....
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998764
No 334
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.17 E-value=0.16 Score=52.27 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.++.+|+|+|++|+|||||++.|.+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998864
No 335
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.16 E-value=0.81 Score=48.90 Aligned_cols=26 Identities=31% Similarity=0.612 Sum_probs=23.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
.+|..|.+.|+||+|||+|+.+|...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 55778999999999999999999876
No 336
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.16 E-value=0.26 Score=50.70 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+..|.|.|++|+|||||+++|....
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998764
No 337
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.12 E-value=0.17 Score=54.74 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+-.+|+|+|++|+|||||+++|++.+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 34689999999999999999999875
No 338
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.12 E-value=0.17 Score=51.71 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIK 98 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~ 98 (1068)
+.+|+|+|++|+||||+.+.|.+
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 339
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.06 E-value=0.14 Score=52.89 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+--+++|+|++|+|||||++.|++..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999853
No 340
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.05 E-value=0.16 Score=52.62 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+.+|+|+|++|+||||+.+.|.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998754
No 341
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.04 E-value=0.15 Score=56.56 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+--+|+|+|++|+|||||++.|.+-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34589999999999999999999986
No 342
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.92 E-value=0.15 Score=58.04 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=22.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||+++|.+-.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 489999999999999999999864
No 343
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.79 E-value=0.16 Score=52.97 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHh
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIK 98 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~ 98 (1068)
+--+++|+|++|+|||||++.|++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 446899999999999999999984
No 344
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.78 E-value=0.17 Score=49.38 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=18.7
Q ss_pred eEEEEECCCCCChhHHHHHH
Q 046721 77 YVVVVQGPPQVGKSLLIKCL 96 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L 96 (1068)
.+|+|+|++|+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 345
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.73 E-value=1.4 Score=49.27 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.4
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
.+|+|+|++|+|||||+++|++.+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3799999999999999999999753
No 346
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.71 E-value=0.16 Score=55.20 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=22.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.+-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999874
No 347
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.62 E-value=0.15 Score=52.49 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=21.1
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+|+|+|++|+|||||++.|.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999999864
No 348
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.60 E-value=0.89 Score=48.66 Aligned_cols=27 Identities=37% Similarity=0.703 Sum_probs=23.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+|..|.+.|+||+|||+|+++|....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456779999999999999999998763
No 349
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.57 E-value=0.2 Score=50.05 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
|.+|+|+|.+|+||||+.+.|...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999998764
No 350
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.55 E-value=1.3 Score=46.38 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=23.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+|..|.+.|+||+|||+|+++|....
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456778999999999999999998753
No 351
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.55 E-value=1.4 Score=47.47 Aligned_cols=27 Identities=30% Similarity=0.580 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.++..|.+.|+||+|||||+++|.+..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 457789999999999999999998764
No 352
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=89.55 E-value=0.2 Score=51.26 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
+..+|+|+|++|+||||+.+.|...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999864
No 353
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=89.47 E-value=0.18 Score=49.43 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
.+|+|+|++|+||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999865
No 354
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.25 E-value=0.16 Score=57.65 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=21.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|||||||++.|.|-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 479999999999999999999964
No 355
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.24 E-value=0.23 Score=50.46 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+.+|+|.|++|+||||+.+.|....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998764
No 356
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.20 E-value=0.21 Score=49.84 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+.+|+|.|++|+||||+.+.|....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 357
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.18 E-value=0.21 Score=50.83 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
..+|+|+|++|+|||||++.|++..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999999864
No 358
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.16 E-value=0.16 Score=55.96 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
--+++|+|++|+|||||++.|.|-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3589999999999999999999874
No 359
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.10 E-value=1.3 Score=51.49 Aligned_cols=29 Identities=41% Similarity=0.701 Sum_probs=25.6
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 72 GEPPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 72 ~~~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.-.||+-|.+.|+||+|||+|+++|.+..
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34688999999999999999999998874
No 360
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.10 E-value=0.12 Score=57.36 Aligned_cols=25 Identities=28% Similarity=0.628 Sum_probs=22.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
-+|||||++|+|||||++.|.+-+.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CEEEEECCCCchHHHHHHHHHcCCC
Confidence 4799999999999999999998753
No 361
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.04 E-value=0.19 Score=57.00 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=22.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.|-.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999864
No 362
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.01 E-value=1.1 Score=45.49 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
|..|.|.|++|+|||||++.|....
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998764
No 363
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.00 E-value=0.22 Score=52.29 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=24.2
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhc
Q 046721 72 GEPPPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 72 ~~~pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
...+..+|+|+|+.|+|||||++.|.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3355689999999999999999999876
No 364
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=88.88 E-value=0.2 Score=56.93 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=22.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.|-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 489999999999999999999864
No 365
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=88.87 E-value=0.2 Score=57.34 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=22.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|||||||++.|.|-.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 479999999999999999999864
No 366
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=88.82 E-value=0.2 Score=56.90 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=22.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.|-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 489999999999999999999874
No 367
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.77 E-value=1.1 Score=48.34 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
|+..|.++|+||+|||+|+++|....
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHH
Confidence 45689999999999999999998864
No 368
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=88.64 E-value=0.21 Score=56.99 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=22.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.|-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 479999999999999999999864
No 369
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=88.55 E-value=0.19 Score=50.39 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
...|+++|++|+|||||+++|.+..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999875
No 370
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=88.48 E-value=0.22 Score=56.81 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=22.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.|-.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 489999999999999999999864
No 371
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.46 E-value=1.7 Score=47.97 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=21.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+--++.|.|.||+|||||+..|....
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344588899999999999988887653
No 372
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.44 E-value=0.74 Score=51.06 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
..||+.|.+.|+||+|||+|+++|....
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3567889999999999999999998764
No 373
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.17 E-value=0.12 Score=52.44 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=22.8
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
.+|+|+|++|+|||||++.|++.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999999864
No 374
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.16 E-value=0.29 Score=49.51 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
+.|.+|+|+|.+|+||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45789999999999999999998864
No 375
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.10 E-value=0.26 Score=49.56 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
.+.+|+|+|++|+||||+.+.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999764
No 376
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=88.08 E-value=1.4 Score=47.72 Aligned_cols=65 Identities=11% Similarity=0.082 Sum_probs=43.8
Q ss_pred eeEEEEeCCCChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHh------CCCCcEEEEEeCCCcCC
Q 046721 120 RRLQFVECPNDING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQN------HGLPNVMGVLTHLDKFT 184 (1068)
Q Consensus 120 ~rl~fIDtPGdl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~------~GlP~vIvVLNKiDlvk 184 (1068)
..+++||||+.+.. +..++..||.||+++.++..--.....++..+.. .+++.+-+|+|++|.-.
T Consensus 155 yD~IiiD~pp~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 155 YDLIIIDTVPTPSVYTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp CSEEEEEECSSCSHHHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred CCEEEEECCCCccHHHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 46899999886654 4556678999999998865333333445555543 36664447899998643
No 377
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=87.98 E-value=0.92 Score=48.39 Aligned_cols=64 Identities=5% Similarity=-0.082 Sum_probs=45.1
Q ss_pred CeeEEEEeCCCChhH-HHH--HHHhcCEEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCc
Q 046721 119 KRRLQFVECPNDING-MID--CAKFADLALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDK 182 (1068)
Q Consensus 119 k~rl~fIDtPGdl~s-mld--~akvADlVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDl 182 (1068)
...+++||||+.+.. .+. .+..||.+|+|+.++...-.....++..++..|++.+-+|+|+.|.
T Consensus 128 ~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp SCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred CCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 456899999886543 222 2347999999998875444445577788888898843388999874
No 378
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=87.86 E-value=1.2 Score=50.50 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+-.+|.|+|+|++|||||+..|+...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999988764
No 379
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=87.72 E-value=0.31 Score=49.40 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+.+|+|+|.+|+||||+.+.|....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998764
No 380
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=87.69 E-value=0.34 Score=53.03 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
..|.+|.|+|+||+|||||.+.|....
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998653
No 381
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=87.65 E-value=0.3 Score=48.86 Aligned_cols=24 Identities=21% Similarity=0.074 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
+.+|+++|++|+||||+.+.|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999999764
No 382
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=87.59 E-value=0.3 Score=48.79 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
+.+|+++|++|+||||+.+.|...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
No 383
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=87.54 E-value=0.31 Score=52.03 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
+..+|+|+|++|+|||||++.|...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999854
No 384
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=87.52 E-value=0.3 Score=49.22 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.8
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+|+|+|.+|+||||+.+.|....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998754
No 385
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=87.52 E-value=0.29 Score=49.91 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.|.+|+|+|.+|+||||+.+.|....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998764
No 386
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=87.51 E-value=0.33 Score=49.44 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
..|.+|+|+|++|+||||+.+.|....
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999997653
No 387
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=87.47 E-value=2.8 Score=45.42 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=21.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
++..|.|.|++|+|||+|+++|...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999999999775
No 388
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.42 E-value=0.29 Score=48.93 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
|.+++|+|++|+|||||+.+|...
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999999875
No 389
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=87.40 E-value=0.3 Score=48.72 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.4
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+|+|+|++|+||||+.+.|....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998764
No 390
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=87.40 E-value=0.27 Score=50.05 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=20.3
Q ss_pred eEEEEECCCCCChhHHHHHHHh
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIK 98 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~ 98 (1068)
.+|+|+|++|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 391
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=87.39 E-value=0.2 Score=56.73 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=22.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.|-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 489999999999999999999864
No 392
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=87.37 E-value=0.31 Score=55.42 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhccc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
.+..+|+|+|++|+|||||+++|++.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3456899999999999999999998753
No 393
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=87.35 E-value=1.4 Score=49.51 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=21.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+--+|.|.|.|++|||||+..|....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44588999999999999988887653
No 394
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=87.35 E-value=1 Score=50.55 Aligned_cols=27 Identities=33% Similarity=0.567 Sum_probs=23.5
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.++..|.+.|+||+|||+|+++|....
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 456778999999999999999998764
No 395
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.32 E-value=1.6 Score=50.58 Aligned_cols=28 Identities=36% Similarity=0.683 Sum_probs=25.1
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-.+|+-|.+.|+||+|||+|+++|.+..
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999999998864
No 396
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.27 E-value=0.29 Score=49.35 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
|.+|+|+|++|+||||+.+.|...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999765
No 397
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=87.14 E-value=0.38 Score=48.91 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
..|.+|+|+|.+|+||||+.+.|...
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44679999999999999999999865
No 398
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.10 E-value=0.34 Score=50.12 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
++.+|+|+|++|+||||+.+.|....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999997753
No 399
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=87.04 E-value=0.27 Score=56.46 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.+-.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 479999999999999999999864
No 400
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=86.98 E-value=0.33 Score=48.40 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
.|.+|+|+|.+|+||||+.+.|...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999764
No 401
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=86.98 E-value=0.37 Score=51.68 Aligned_cols=25 Identities=36% Similarity=0.495 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
.|.+|+|+|+||+||||+.+.|...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999875
No 402
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=86.98 E-value=0.31 Score=49.70 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.|.+|+|.|.+|+||||+.+.|....
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998764
No 403
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=86.91 E-value=2 Score=45.52 Aligned_cols=80 Identities=14% Similarity=0.122 Sum_probs=47.2
Q ss_pred CeeEEEEeCCCChhH-HHHHHHhcCEEEEEEeCCCCCchhHHHHHHHHHh------CCCCcEEEEEeCCCcCCcHHHHHH
Q 046721 119 KRRLQFVECPNDING-MIDCAKFADLALLLIDASHGFEMETFEFLNLMQN------HGLPNVMGVLTHLDKFTDKKKLRK 191 (1068)
Q Consensus 119 k~rl~fIDtPGdl~s-mld~akvADlVLlVIDas~g~e~~t~eiL~~L~~------~GlP~vIvVLNKiDlvk~~k~l~~ 191 (1068)
...+++||||+.+.. +..++..||.||+++.++..--.....++..+.. .+++..-+|+|+++.-.. ..+.
T Consensus 111 ~yD~iiiD~pp~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~--~~~~ 188 (257)
T 1wcv_1 111 GYDLVLLDAPPSLSPLTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTL--LAQQ 188 (257)
T ss_dssp TCSEEEEECCSSCCHHHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCS--HHHH
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcH--HHHH
Confidence 356899999886554 5566788999999998864222222334444432 245522378999986432 1223
Q ss_pred HHHHHHHHh
Q 046721 192 TKQHLKHRF 200 (1068)
Q Consensus 192 vkk~Lk~~~ 200 (1068)
+.+.+++.+
T Consensus 189 ~~~~l~~~~ 197 (257)
T 1wcv_1 189 VEAQLRAHF 197 (257)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 344454443
No 404
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=86.89 E-value=0.39 Score=51.00 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+|.+|+|+|+||+||||+.+.|...+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999998654
No 405
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.86 E-value=2.1 Score=47.20 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
.|+ +.++|++|+|||||+++|.+.
T Consensus 36 ~~~-~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 36 LPH-LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCC-EEEECSTTSSHHHHHHTHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHH
Confidence 345 899999999999999999885
No 406
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=86.74 E-value=0.3 Score=52.15 Aligned_cols=28 Identities=18% Similarity=0.417 Sum_probs=24.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
...|.+|+++|+||+||||+.+.|....
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3557899999999999999999998764
No 407
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=86.72 E-value=0.39 Score=49.56 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCChhHHHHHHHh
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIK 98 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~ 98 (1068)
|.+|+|+|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999999875
No 408
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=86.70 E-value=0.4 Score=49.39 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
++.+|+|+|++|+||||+.+.|....
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998764
No 409
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=86.67 E-value=0.42 Score=47.70 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
++.+|+|+|.+|+||||+.+.|.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998754
No 410
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=86.64 E-value=0.19 Score=57.03 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=22.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.|-.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999864
No 411
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.64 E-value=0.3 Score=48.60 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=17.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
.|.+|+|.|.+|+||||+.+.|...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999765
No 412
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=86.57 E-value=2.2 Score=47.38 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+.|.|.|++|+|||||++.|.+..
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998874
No 413
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=86.41 E-value=0.39 Score=52.13 Aligned_cols=26 Identities=38% Similarity=0.671 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+|.-|+++|+||+|||||+++|.+..
T Consensus 43 ~~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 43 TPAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 34449999999999999999998863
No 414
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=86.40 E-value=0.36 Score=47.60 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
..++++|++|+|||||+++|.+...
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998754
No 415
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=86.34 E-value=0.4 Score=48.75 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+.+|+|+|++|+|||||+..|+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999864
No 416
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=86.32 E-value=0.29 Score=55.23 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-..++|+|++|+|||||++.|.+.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999875
No 417
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.31 E-value=0.31 Score=50.58 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.|.+|+|+|++|+||||+.+.|....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 418
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=86.28 E-value=0.52 Score=55.17 Aligned_cols=66 Identities=24% Similarity=0.400 Sum_probs=39.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCC----C----ChhHHHHHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECP----N----DINGMIDCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtP----G----dl~smld~akvADlVLlV 147 (1068)
+..|.++|+||+|||+|+++|........+.... .+..+..+|+. | .+..+++.+..+.-+|++
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l--------~~~~~~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLf 272 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEIL--------RDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILF 272 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTT--------SSCCEECC----------CTTHHHHHHHHHTCCCCEEE
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhh--------cCCeEEEeeCCccccchHHHHHHHHHHHHHhcCCeEEE
Confidence 3467899999999999999998875332211110 01223333332 2 344577777767777888
Q ss_pred Ee
Q 046721 148 ID 149 (1068)
Q Consensus 148 ID 149 (1068)
||
T Consensus 273 iD 274 (468)
T 3pxg_A 273 ID 274 (468)
T ss_dssp EC
T ss_pred Ee
Confidence 98
No 419
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.24 E-value=0.35 Score=50.42 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.|.+|+|+|++|+||||+.+.|....
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998653
No 420
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.15 E-value=0.27 Score=55.59 Aligned_cols=25 Identities=36% Similarity=0.580 Sum_probs=22.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
.+|+|+|++|+|||||+++|++.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3799999999999999999999753
No 421
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=85.89 E-value=1.2 Score=51.73 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+|+.|.+.|+||+|||+|+++|....
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 567889999999999999999998764
No 422
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=85.89 E-value=0.45 Score=50.18 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
..|++|.|+|+||+||+|+...|...+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998764
No 423
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=85.82 E-value=1.4 Score=48.51 Aligned_cols=26 Identities=35% Similarity=0.617 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
.+|..|.+.|+||+|||+|+++|...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 56788999999999999999999775
No 424
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=85.80 E-value=0.45 Score=47.97 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
.+.+|+|+|++|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998765
No 425
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.77 E-value=0.45 Score=50.34 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
|.-|+++|++|+|||||+++|.+..
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3449999999999999999999864
No 426
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=85.72 E-value=0.37 Score=53.64 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+|..++++|+||+|||||++.|.+..
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 45678999999999999999999874
No 427
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=85.43 E-value=0.43 Score=48.89 Aligned_cols=26 Identities=19% Similarity=0.439 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+-.+++|+|++|+|||||++.|++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999999764
No 428
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=85.32 E-value=0.41 Score=47.75 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
+.+|+|+|++|+||||+.+.|...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457889999999999999999864
No 429
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=85.30 E-value=0.36 Score=53.51 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+++|+|+.|+|||||+|.|++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 578999999999999999999763
No 430
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=85.18 E-value=0.46 Score=54.26 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.8
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhc
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
-+++..|+|+|++|+|||||++.|.+.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 355679999999999999999999975
No 431
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=85.16 E-value=0.2 Score=51.28 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+|+|+|++|+|||||++.|....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998764
No 432
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.16 E-value=0.42 Score=55.32 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=22.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+|+|+|++|+|||||+++|++..
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 589999999999999999999875
No 433
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.06 E-value=1.9 Score=41.65 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.0
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.|.|.|++|+|||+|.++|....
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999997653
No 434
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.93 E-value=1.4 Score=55.37 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
..|.++|+||+|||+|++.|....
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999875
No 435
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=84.89 E-value=0.44 Score=56.21 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=22.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||+++|.+-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 789999999999999999999864
No 436
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=84.79 E-value=0.44 Score=56.89 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=22.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.|..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999964
No 437
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=84.71 E-value=0.6 Score=45.95 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
.|.+.+|+|++|+|||||+.+|.-.
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999999998754
No 438
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.65 E-value=3.1 Score=47.97 Aligned_cols=29 Identities=38% Similarity=0.701 Sum_probs=25.4
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 72 GEPPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 72 ~~~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.-.||+-|.+.|+||+|||+|+++|.+..
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 34678889999999999999999998863
No 439
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=84.43 E-value=0.61 Score=55.70 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=22.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-++||||++|+|||||++.|.+..
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999999964
No 440
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=84.27 E-value=0.59 Score=49.63 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=23.0
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
..|.+|+|.|.+|+||||+.+.|....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999987753
No 441
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=84.21 E-value=0.44 Score=47.65 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=20.3
Q ss_pred eEEEEECCCCCChhHHHHHHHhc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
.+|+|+|++|+||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998765
No 442
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=84.15 E-value=0.38 Score=56.43 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=21.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+|+|+|++|+|||||++.|++-.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 378999999999999999999863
No 443
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=84.02 E-value=0.59 Score=50.66 Aligned_cols=24 Identities=25% Similarity=0.384 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCChhHHHHHHHhc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
|.+|.|+|+||+||||+.+.|...
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999999863
No 444
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=84.02 E-value=0.56 Score=50.03 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
|.+|+|+|++|+|||||.+.|....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999997653
No 445
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=83.98 E-value=0.5 Score=57.32 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=22.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.|-.
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 489999999999999999999964
No 446
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=83.97 E-value=0.56 Score=51.07 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHH
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLI 97 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~ 97 (1068)
+.|.+|+|+|.+|+||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999999987
No 447
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=83.97 E-value=1.2 Score=49.95 Aligned_cols=27 Identities=37% Similarity=0.775 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+|..|.+.|+||+|||+|+++|....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 467789999999999999999997653
No 448
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=83.88 E-value=1.8 Score=47.87 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
|+.+.|.|++|+|||||++.|....
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678899999999999999998764
No 449
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=83.88 E-value=1.1 Score=49.22 Aligned_cols=25 Identities=16% Similarity=0.188 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+..|.|.|+||+|||||+++|....
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3457899999999999999998864
No 450
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=83.83 E-value=1.7 Score=46.95 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=22.9
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.++..|.+.|+||+|||+|+++|....
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 445679999999999999999887764
No 451
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=83.81 E-value=0.49 Score=51.39 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
+--+++|+|+||+|||||++.|.+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 335899999999999999999998753
No 452
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=83.71 E-value=0.71 Score=48.72 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
...+|+|.|++|+||||+++.|.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999988753
No 453
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=83.70 E-value=0.63 Score=50.06 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
|.-|+|+|++|+|||||+++|.+..
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCcChHHHHHHHHHHHc
Confidence 3349999999999999999999864
No 454
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=83.53 E-value=0.44 Score=56.63 Aligned_cols=24 Identities=17% Similarity=0.419 Sum_probs=21.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+|+|+|++|+|||||+++|++..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999999875
No 455
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.51 E-value=0.67 Score=49.05 Aligned_cols=27 Identities=37% Similarity=0.573 Sum_probs=23.1
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+|.-|.++|+||+|||||+++|.+..
T Consensus 43 ~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 43 KIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 456679999999999999999998763
No 456
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=83.44 E-value=0.61 Score=46.79 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.9
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+|+|.|.+|+||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998764
No 457
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=83.40 E-value=0.63 Score=46.45 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.7
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+|+|.|.+|+||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 458
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=83.38 E-value=1.7 Score=49.14 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=22.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
.++..|.+.|+||+|||+|+++|...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999999765
No 459
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=83.36 E-value=2.2 Score=49.62 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=21.1
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+--+|.|.|.||+|||||+-.|....
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 33578899999999999988777654
No 460
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=83.31 E-value=6.8 Score=43.70 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=22.2
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
++-.++.|+|+|++|||||+..|+..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568899999999999999988875
No 461
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=83.26 E-value=0.64 Score=49.72 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.2
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+|+|+|++|+|||||.+.|....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998753
No 462
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.03 E-value=3.8 Score=47.54 Aligned_cols=29 Identities=38% Similarity=0.650 Sum_probs=25.6
Q ss_pred CCCCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 72 GEPPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 72 ~~~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.-.+|+-|.+.|+||+|||+|+++|.+..
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 34678999999999999999999999874
No 463
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=83.00 E-value=0.55 Score=56.10 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.9
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.+-.
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999974
No 464
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=82.95 E-value=3.6 Score=44.89 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=21.7
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
..|..+.+-|+||+|||+++++|....
T Consensus 46 ~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 46 KIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp CCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 345667777889999999999997664
No 465
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=82.92 E-value=0.58 Score=46.51 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=19.9
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
+|+|+|++|+||||+.+.|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999765
No 466
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=82.73 E-value=0.61 Score=55.71 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=22.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+|+|+|++|+|||||++.|.|..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999974
No 467
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=82.71 E-value=0.67 Score=47.55 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=20.4
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+|+|+|++|+||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997654
No 468
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=82.48 E-value=0.66 Score=47.66 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.|+|+|+||+||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997654
No 469
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=82.31 E-value=0.71 Score=47.88 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+-.+++|+|++|+|||||+..|++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34689999999999999999999853
No 470
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=82.28 E-value=0.75 Score=52.08 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
++.+++|+|++|+|||||+++|+..
T Consensus 22 ~~g~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 22 QSGITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999854
No 471
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=82.25 E-value=3.8 Score=44.87 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=43.8
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCC--ChhHHHHHH-HhcCEEEEEEeCC
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPN--DINGMIDCA-KFADLALLLIDAS 151 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPG--dl~smld~a-kvADlVLlVIDas 151 (1068)
++..|.|.|++|+|||+|+++|...... .+..+.|+. ....+...+ ..++..+++||=-
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi 115 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSA------------------NIKTTAAPMIEKSGDLAAILTNLSEGDILFIDEI 115 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTC------------------CEEEEEGGGCCSHHHHHHHHHTCCTTCEEEEETG
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC------------------CeEEecchhccchhHHHHHHHhccCCCEEEEech
Confidence 3456899999999999999999665311 122233321 111222222 2356677778865
Q ss_pred CCCchhHH-HHHHHHHhCC
Q 046721 152 HGFEMETF-EFLNLMQNHG 169 (1068)
Q Consensus 152 ~g~e~~t~-eiL~~L~~~G 169 (1068)
+.+..... .++..+....
T Consensus 116 ~~l~~~~~~~Ll~~l~~~~ 134 (338)
T 3pfi_A 116 HRLSPAIEEVLYPAMEDYR 134 (338)
T ss_dssp GGCCHHHHHHHHHHHHTSC
T ss_pred hhcCHHHHHHHHHHHHhcc
Confidence 54544433 4566666543
No 472
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=82.21 E-value=0.61 Score=56.55 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=22.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.|..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 489999999999999999999964
No 473
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=82.19 E-value=0.81 Score=47.93 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
.+.+|+|+|.+|+||||+.+.|...+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998764
No 474
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=82.15 E-value=0.63 Score=55.97 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
-+++|+|++|+|||||++.|.+-+.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4799999999999999999999753
No 475
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=82.14 E-value=0.66 Score=45.59 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=20.4
Q ss_pred eEEEEECCCCCChhHHHHHHHhc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
.+|+|+|.+|+||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 476
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=81.86 E-value=0.64 Score=52.44 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=22.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|++..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999984
No 477
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=81.85 E-value=1.1 Score=50.59 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=20.4
Q ss_pred CCCCeEEEEEC-CCCCChhHHHHHHHh
Q 046721 73 EPPPYVVVVQG-PPQVGKSLLIKCLIK 98 (1068)
Q Consensus 73 ~~pP~~VaVVG-~pnvGKSTLIn~L~~ 98 (1068)
...+++|+|++ -.|+||||+.-.|..
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~ 166 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAI 166 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHH
Confidence 35678999997 599999997766653
No 478
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.72 E-value=2.2 Score=46.02 Aligned_cols=24 Identities=29% Similarity=0.758 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
|. +.+.|++|+||||++..|....
T Consensus 43 ~~-~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 43 PH-MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CC-EEEECSTTSSHHHHHHHHHHHH
T ss_pred Ce-EEEECcCCCCHHHHHHHHHHHh
Confidence 44 8999999999999999998764
No 479
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=81.70 E-value=0.59 Score=56.37 Aligned_cols=25 Identities=32% Similarity=0.585 Sum_probs=22.6
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
-+++|+|++|+|||||++.|.+-+.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4799999999999999999999753
No 480
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=81.68 E-value=0.6 Score=56.17 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
-+++|+|++|+|||||++.|.+-+.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhhccC
Confidence 4799999999999999999999753
No 481
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=81.68 E-value=0.7 Score=56.06 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=22.0
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+|+|+|++|+|||||++.|.|..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999964
No 482
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=81.48 E-value=0.86 Score=44.61 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=20.0
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
+|+|.|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 483
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=81.43 E-value=0.88 Score=47.75 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.8
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
.++.+|+|+|.+|+||||+.+.|.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998864
No 484
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=81.26 E-value=0.64 Score=56.12 Aligned_cols=25 Identities=28% Similarity=0.598 Sum_probs=22.7
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
-+|+|+|++|+|||||++.|.+-+.
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCcC
Confidence 4899999999999999999999753
No 485
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=80.88 E-value=0.78 Score=55.65 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+|+|+|++|+|||||++.|.|-.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999999974
No 486
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=80.74 E-value=4.3 Score=44.84 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=31.3
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeCCCC
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVECPND 130 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDtPGd 130 (1068)
+-.++.|.|+|++|||||+..|+....... . .+ +...++.|+++.+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~--~-~g------g~~~~vlyi~~e~~ 152 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPP--E-KG------GLSGKAVYIDTEGT 152 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCG--G-GT------CCSCEEEEEESSSC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhccc--c-cC------CCCCeEEEEECCCC
Confidence 446899999999999999988887532110 0 00 11346777887664
No 487
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=80.59 E-value=7 Score=39.96 Aligned_cols=79 Identities=13% Similarity=0.076 Sum_probs=46.5
Q ss_pred CeeEEEEeCCCChh-------HHHHHHHhcC-EEEEEEeCCCCCchhHHHHHHHHHhCCCCcEEEEEeCCCcCCcHHHHH
Q 046721 119 KRRLQFVECPNDIN-------GMIDCAKFAD-LALLLIDASHGFEMETFEFLNLMQNHGLPNVMGVLTHLDKFTDKKKLR 190 (1068)
Q Consensus 119 k~rl~fIDtPGdl~-------smld~akvAD-lVLlVIDas~g~e~~t~eiL~~L~~~GlP~vIvVLNKiDlvk~~k~l~ 190 (1068)
...+++|||||.+. ...+.+...+ -||+|+.+..+--......+..++..+++-.-+|+|++|.-.. ...
T Consensus 108 ~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~--~~~ 185 (224)
T 1byi_A 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGK--RHA 185 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCT--THH
T ss_pred hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchh--hHH
Confidence 45799999987432 2445555444 4788887754332334456666677788744467899985421 123
Q ss_pred HHHHHHHHH
Q 046721 191 KTKQHLKHR 199 (1068)
Q Consensus 191 ~vkk~Lk~~ 199 (1068)
...+.+.+.
T Consensus 186 ~~~~~l~~~ 194 (224)
T 1byi_A 186 EYMTTLTRM 194 (224)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344445444
No 488
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=80.31 E-value=2 Score=53.10 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+..|.++|+||+|||+|+++|....
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999998864
No 489
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=80.26 E-value=0.75 Score=47.60 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+..|+|+|+||+||||+.+.|...+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998764
No 490
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=79.89 E-value=5.9 Score=42.66 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=20.1
Q ss_pred EEEECCCCCChhHHHHHHHhcc
Q 046721 79 VVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 79 VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+.+.|++|+||||++++|....
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999998764
No 491
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=79.88 E-value=1.2 Score=55.23 Aligned_cols=66 Identities=24% Similarity=0.385 Sum_probs=39.6
Q ss_pred CeEEEEECCCCCChhHHHHHHHhccccCCCCceeccEEEEeCCCeeEEEEeC----CC----ChhHHHHHHHhcCEEEEE
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHYTKLKVPEVRGPVTVVSGKKRRLQFVEC----PN----DINGMIDCAKFADLALLL 147 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~~~~~~~tt~~~Iti~~~~k~rl~fIDt----PG----dl~smld~akvADlVLlV 147 (1068)
+..|.++|+||+|||+++++|........+..... +..+.-+|+ .| .+..+++.+..+.-+|++
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~--------~~~~~~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLf 272 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILR--------DKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILF 272 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTS--------SCCEECC----------CTTHHHHHHHHHTCCCCEEE
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhc--------CCeEEEecccccccchHHHHHHHHHHHHHhcCCEEEE
Confidence 44688999999999999999988753222111100 111211222 23 345577777777778888
Q ss_pred Ee
Q 046721 148 ID 149 (1068)
Q Consensus 148 ID 149 (1068)
||
T Consensus 273 iD 274 (758)
T 3pxi_A 273 ID 274 (758)
T ss_dssp EC
T ss_pred Ec
Confidence 99
No 492
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=79.80 E-value=1.1 Score=46.22 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.4
Q ss_pred CCCeEEEEECCCCCChhHHHHHHHhc
Q 046721 74 PPPYVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 74 ~pP~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
..|.+.+|+|++|+|||||+.+|.-.
T Consensus 21 f~~~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 21 FKEGINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred eCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 34678999999999999999998754
No 493
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=79.61 E-value=0.96 Score=49.39 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=24.3
Q ss_pred CCCCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 73 EPPPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 73 ~~pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
..+|+.|.+.|+||+|||+|+++|....
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567888899999999999999998774
No 494
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=79.55 E-value=1.7 Score=50.42 Aligned_cols=25 Identities=16% Similarity=0.196 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCChhHHHHHHHhcc
Q 046721 76 PYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 76 P~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+..+.|.|++|+|||||+++|.+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4457899999999999999998764
No 495
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=79.48 E-value=0.56 Score=56.36 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.5
Q ss_pred eEEEEECCCCCChhHHHHHHHhccc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHYT 101 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~~ 101 (1068)
-.|+|+|++|+|||||++.|.+-+.
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCC
Confidence 4799999999999999999998753
No 496
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=79.43 E-value=1 Score=46.88 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.5
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+|+|+|++|+||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997654
No 497
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=79.39 E-value=0.85 Score=53.09 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=22.1
Q ss_pred eEEEEECCCCCChhHHHHHHHhcc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
-+++|+|++|+|||||++.|.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 479999999999999999999984
No 498
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=79.39 E-value=5.5 Score=46.01 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCChhHHHHHHHhcc
Q 046721 75 PPYVVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 75 pP~~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+--++.|.|+||+|||||+..|....
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44588999999999999988887764
No 499
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=79.38 E-value=1.1 Score=45.26 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.7
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 046721 78 VVVVQGPPQVGKSLLIKCLIKHY 100 (1068)
Q Consensus 78 ~VaVVG~pnvGKSTLIn~L~~~~ 100 (1068)
+|+|.|.+|+||||+.+.|....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999997653
No 500
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=79.22 E-value=1.1 Score=44.02 Aligned_cols=23 Identities=30% Similarity=0.118 Sum_probs=20.4
Q ss_pred eEEEEECCCCCChhHHHHHHHhc
Q 046721 77 YVVVVQGPPQVGKSLLIKCLIKH 99 (1068)
Q Consensus 77 ~~VaVVG~pnvGKSTLIn~L~~~ 99 (1068)
-+|+|.|.+|+||||+.+.|...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998764
Done!