BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046723
(562 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 5/145 (3%)
Query: 170 AGVGLVRAPDVRGWEKARRLSLMQNQIRNLSE--IPTCPHLLTLFLNENNLRKIHNDFFQ 227
G+ + RG K L+L NQ++ LS L TL L N L + F
Sbjct: 45 TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD 104
Query: 228 FMPSLKVLNLSHCELTKLPVGI-SELVSLQHLDLSESDIEELP-GELKALVNLKCLDLEY 285
+ L L L +L LP G+ L L+ L L+ + ++ +P G L NL+ L L
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS- 163
Query: 286 TGNLITIPRQLISNLSRLQVLRMFG 310
T L ++P L +LQ + +FG
Sbjct: 164 TNQLQSVPHGAFDRLGKLQTITLFG 188
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 5/145 (3%)
Query: 170 AGVGLVRAPDVRGWEKARRLSLMQNQIRNLSE--IPTCPHLLTLFLNENNLRKIHNDFFQ 227
G+ + RG K L+L NQ++ LS L TL L N L + F
Sbjct: 45 TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD 104
Query: 228 FMPSLKVLNLSHCELTKLPVGI-SELVSLQHLDLSESDIEELP-GELKALVNLKCLDLEY 285
+ L L L +L LP G+ L L+ L L+ + ++ +P G L NL+ L L
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS- 163
Query: 286 TGNLITIPRQLISNLSRLQVLRMFG 310
T L ++P L +LQ + +FG
Sbjct: 164 TNQLQSVPHGAFDRLGKLQTITLFG 188
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 8/145 (5%)
Query: 169 YAGVGLVRAPDVRGWEKARRLS---LMQNQIRNLSE--IPTCPHLLTLFLNENNLRKIHN 223
Y +G + D+ ++ L+ L NQ+++L +L L L EN L+ + +
Sbjct: 67 YLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126
Query: 224 DFFQFMPSLKVLNLSHCELTKLPVGI-SELVSLQHLDLSESDIEELP-GELKALVNLKCL 281
F + +L LNL+H +L LP G+ +L +L LDLS + ++ LP G L LK L
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186
Query: 282 DLEYTGNLITIPRQLISNLSRLQVL 306
L Y L ++P + L+ LQ +
Sbjct: 187 RL-YQNQLKSVPDGVFDRLTSLQYI 210
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 76/142 (53%), Gaps = 11/142 (7%)
Query: 186 ARRLSLMQNQIRNLSEIPTCP-HLLT----LFLNENNLRKIHNDFFQFMPSLKVLNLSHC 240
++L L N+ LS +P+ H LT L+LN+N L+ + F+ + +L+ L ++
Sbjct: 39 TKKLDLQSNK---LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95
Query: 241 ELTKLPVGI-SELVSLQHLDLSESDIEELPGEL-KALVNLKCLDLEYTGNLITIPRQLIS 298
+L LP+G+ +LV+L L L + ++ LP + +L L L L Y L ++P+ +
Sbjct: 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFD 154
Query: 299 NLSRLQVLRMFGASHKAIKEAS 320
L+ L+ LR++ K + E +
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGA 176
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 27/163 (16%)
Query: 185 KARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCEL 242
+ R L L +N+I+ L+ E + PHL L LNEN + + F + +L+ L L L
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 243 TKLPVGI-SELVSLQHLDLSESDIEELPGEL-KALVNLKCL-----DLEYTG-------- 287
+P+G+ + L +L LD+SE+ I L + + L NLK L DL Y
Sbjct: 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152
Query: 288 ----------NLITIPRQLISNLSRLQVLRMFGASHKAIKEAS 320
NL +IP + +S+L L VLR+ + AI++ S
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 32/158 (20%)
Query: 198 NLSEIPT-----CPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLS-------------- 238
NL+ IPT L+ L L N+ I + F+ + LKVL +S
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222
Query: 239 ----------HCELTKLP-VGISELVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYT 286
HC LT +P + + LV L+ L+LS + I + G L L+ L+ + L
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL-VG 281
Query: 287 GNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSI 324
G L + L+ L+VL + G ++E+ +S+
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 208 LLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGI-SELVSLQHLDLSESDIE 266
L L+L N L+ + N F + SL LNLS +L LP G+ +L L+ L L+ + ++
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
Query: 267 ELP-GELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVL 306
LP G L LK L L Y L ++P + L+ LQ +
Sbjct: 114 SLPDGVFDKLTQLKDLRL-YQNQLKSVPDGVFDRLTSLQYI 153
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 16/113 (14%)
Query: 202 IPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGI-SELVSLQHLDL 260
IPT +L L++N+ + K+ F + L LNL+ +LT LPVG+ +L L HL L
Sbjct: 38 IPTTTQVLHLYINQ--ITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLAL 95
Query: 261 SESDIEELP----GELKALVNL---------KCLDLEYTGNLITIPRQLISNL 300
+ ++ +P LK+L ++ +C D+ Y N I +++ L
Sbjct: 96 HINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECSDILYLKNWIVQHASIVNPL 148
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 7/118 (5%)
Query: 173 GLVRAPDVRGWEKARRLSLMQNQIRNL--SEIPTCPHLLTLFLNENNLRKIHNDFFQFMP 230
GL+ P +K L++ QN I L S+I + L L ++ N ++ + F+F
Sbjct: 11 GLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ 69
Query: 231 SLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELP--GELKALVNLKCLDLEYT 286
L+ L+LSH +L K + V+L+HLDLS + + LP E + LK L L T
Sbjct: 70 ELEYLDLSHNKLVK--ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 159 IEKEKENFFVYAGVGLVRAP-DVRGWEKARRLSLMQNQIRNL--SEIPTCPHLLTLFLNE 215
E E+ Y+ L P D+ KA LSL QN I L +I L L L+
Sbjct: 28 FSNELESMVDYSNRNLTHVPKDLPPRTKA--LSLSQNSISELRMPDISFLSELRVLRLSH 85
Query: 216 NNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELP 269
N +R + F F L+ L++SH L + + SL+HLDLS +D + LP
Sbjct: 86 NRIRSLDFHVFLFNQDLEYLDVSHNRLQN--ISCCPMASLRHLDLSFNDFDVLP 137
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 8/142 (5%)
Query: 169 YAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSEIP---TCPHLLTLFLNENNLRKIHNDF 225
+ GV + + + G E+ L + ++ +SE + +L+ L ++ + R N
Sbjct: 382 FNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440
Query: 226 FQFMPSLKVLNLSHCELTK--LPVGISELVSLQHLDLSESDIEEL-PGELKALVNLKCLD 282
F + SL+VL ++ + LP +EL +L LDLS+ +E+L P +L +L+ L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 283 LEYTGNLITIPRQLISNLSRLQ 304
+ + L ++P + L+ LQ
Sbjct: 501 MA-SNQLKSVPDGIFDRLTSLQ 521
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 231 SLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELP--GELKALVNLKCLDLEYTGN 288
SLK L+LS + + L L+HLD S+++++ +L NL LD+ +T
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 289 LITIPRQLISNLSRLQVLRMFGASHK 314
+ + + LS L+VL+M G S +
Sbjct: 434 RVAF-NGIFNGLSSLEVLKMAGNSFQ 458
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 215 ENNLRKIHNDFFQFMPSLKVLNLSH--CELTKLPVGISELVSLQHLDLSESDIEEL 268
E NL + N + +LK LN++H + KLP S L +L+HLDLS + I+ +
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 189 LSLMQNQIRNLS-EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPV 247
L L QI N+S I L L+LN N+L ++ + + + +L+VL+LSH LT LP
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPA 287
Query: 248 GISELVSLQHLDLSESDIEELPGELKALVNLKCLDLE 284
+ L++ ++ + LP E L NL+ L +E
Sbjct: 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 234 VLNLSHCELTKLPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIP 293
L+LS+ ++ + I + L L L+ + + ELP E+K L NL+ LDL + L ++P
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLP 286
Query: 294 RQLIS 298
+L S
Sbjct: 287 AELGS 291
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 169 YAGVGLVRAPDVRGWEKARRLS---LMQNQIRNLSE--IPTCPHLLTLFLNENNLRKIHN 223
Y +G + D+ ++ L+ L NQ+++L +L L L EN L+ + +
Sbjct: 67 YLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126
Query: 224 DFFQFMPSLKVLNLSHCELTKLPVGI-SELVSLQHLDLSESDIEELP-GELKALVNLKCL 281
F + +L L L H +L LP G+ +L +L LDL + ++ LP G L LK L
Sbjct: 127 GVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQL 186
Query: 282 DLEYTGNLITIPRQLISNLSRL 303
L L ++P + L+ L
Sbjct: 187 SLN-DNQLKSVPDGVFDRLTSL 207
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 13/123 (10%)
Query: 207 HLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSE-SDI 265
HL ++ L ++ + QF L+ L L+ L LP I+ L L+ L + ++
Sbjct: 105 HLQHXTIDAAGLXELPDTXQQFA-GLETLTLARNPLRALPASIASLNRLRELSIRACPEL 163
Query: 266 EELP---------GELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAI 316
ELP GE + LVNL+ L LE+TG + ++P I+NL L+ L++ + A+
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPAS-IANLQNLKSLKIRNSPLSAL 221
Query: 317 KEA 319
A
Sbjct: 222 GPA 224
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 12/146 (8%)
Query: 169 YAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSEIP---TCPHLLTLFLNENNLRKIHNDF 225
+ GV + + + G E+ L + ++ +SE + +L+ L ++ + R N
Sbjct: 406 FNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 464
Query: 226 FQFMPSLKVLNLSHCELTK--LPVGISELVSLQHLDLSESDIEEL-PGELKALVNLKCLD 282
F + SL+VL ++ + LP +EL +L LDLS+ +E+L P +L +L+ L+
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524
Query: 283 LEYTG--NLITIPRQLISNLSRLQVL 306
+ + +L T P + L+ LQVL
Sbjct: 525 MSHNNFFSLDTFPYKC---LNSLQVL 547
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 231 SLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELP--GELKALVNLKCLDLEYTGN 288
SLK L+LS + + L L+HLD S+++++ +L NL LD+ +T
Sbjct: 398 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457
Query: 289 LITIPRQLISNLSRLQVLRMFGASHK 314
+ + + LS L+VL+M G S +
Sbjct: 458 RVAF-NGIFNGLSSLEVLKMAGNSFQ 482
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 215 ENNLRKIHNDFFQFMPSLKVLNLSH--CELTKLPVGISELVSLQHLDLSESDIEEL 268
E NL + N + +LK LN++H + KLP S L +L+HLDLS + I+ +
Sbjct: 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 12/146 (8%)
Query: 169 YAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSEIP---TCPHLLTLFLNENNLRKIHNDF 225
+ GV + + + G E+ L + ++ +SE + +L+ L ++ + R N
Sbjct: 87 FNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145
Query: 226 FQFMPSLKVLNLSHCELTK--LPVGISELVSLQHLDLSESDIEEL-PGELKALVNLKCLD 282
F + SL+VL ++ + LP +EL +L LDLS+ +E+L P +L +L+ L+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 283 LEYTG--NLITIPRQLISNLSRLQVL 306
+ + +L T P + L+ LQVL
Sbjct: 206 MSHNNFFSLDTFPYKC---LNSLQVL 228
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 231 SLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELP--GELKALVNLKCLDLEYTGN 288
SLK L+LS + + L L+HLD S+++++ +L NL LD+ +T
Sbjct: 79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138
Query: 289 LITIPRQLISNLSRLQVLRMFGASHK 314
+ + + LS L+VL+M G S +
Sbjct: 139 RVAF-NGIFNGLSSLEVLKMAGNSFQ 163
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 72/143 (50%), Gaps = 9/143 (6%)
Query: 169 YAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSEIP---TCPHLLTLFLNENNLRKIHNDF 225
+ GV + + + G E+ L + ++ +SE + +L+ L ++ + R N
Sbjct: 382 FNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440
Query: 226 FQFMPSLKVLNLSHCELTK--LPVGISELVSLQHLDLSESDIEEL-PGELKALVNLKCLD 282
F + SL+VL ++ + LP +EL +L LDLS+ +E+L P +L +L+ L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 283 LEYTG--NLITIPRQLISNLSRL 303
+ + +L T P + +++L L
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVL 523
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 231 SLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELP--GELKALVNLKCLDLEYTGN 288
SLK L+LS + + L L+HLD S+++++ +L NL LD+ +T
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 289 LITIPRQLISNLSRLQVLRMFGASHK 314
+ + + LS L+VL+M G S +
Sbjct: 434 RVAF-NGIFNGLSSLEVLKMAGNSFQ 458
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 215 ENNLRKIHNDFFQFMPSLKVLNLSH--CELTKLPVGISELVSLQHLDLSESDIEEL 268
E NL + N + +LK LN++H + KLP S L +L+HLDLS + I+ +
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 188 RLSLMQNQIRNLSE--IPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKL 245
+LSL QNQI++L + L L+L+EN L+ + N F + LK L L +L +
Sbjct: 56 KLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSV 115
Query: 246 PVGI-SELVSLQHL 258
P GI L SLQ +
Sbjct: 116 PDGIFDRLTSLQKI 129
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 197 RNLSEIPTCPHLLT--LFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGI-SELV 253
++L+ +PT T L+L +N + K+ F + L L+L + +LT LP G+ +L
Sbjct: 27 KSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 86
Query: 254 SLQHLDLSESDIEELPGELKALVNLKCL 281
L L L+++ ++ +P A NLK L
Sbjct: 87 QLTQLSLNDNQLKSIP--RGAFDNLKSL 112
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 197 RNLSEIPTCPHLLT--LFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGI-SELV 253
++L+ +PT T L+L +N + K+ F + L L+L + +LT LP G+ +L
Sbjct: 19 KSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 254 SLQHLDLSESDIEELPGELKALVNLKCL 281
L L L+++ ++ +P A NLK L
Sbjct: 79 QLTQLSLNDNQLKSIP--RGAFDNLKSL 104
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 184 EKARRLSLMQNQIR--NLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCE 241
E L L N+I+ L ++ L L L N +R I N F+P+L+ L+L + +
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252
Query: 242 LTKLPVGISELVSLQHLDLSESDIEEL 268
L+++P G+ +L LQ + L ++I ++
Sbjct: 253 LSRVPAGLPDLKLLQVVYLHTNNITKV 279
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 189 LSLMQNQIRNL--SEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246
L L N I L + HL L L N + KIH F + L+ L +S L ++P
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
Query: 247 VGISELVSLQHLDLSESDIEELP-GELKALVNLKCLDL 283
+ SL L + ++ I ++P G L N+ C+++
Sbjct: 119 PNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 14/94 (14%)
Query: 211 LFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGI-SELVSLQHLDLSESDIEELP 269
L+LN N + K+ F + +L+ L + +LT +P G+ +L L LDL+++ ++ +P
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 270 ----GELKALVNL---------KCLDLEYTGNLI 290
LK+L ++ +C D+ Y N +
Sbjct: 98 RGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWV 131
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 71/165 (43%), Gaps = 32/165 (19%)
Query: 185 KARRLSLMQNQIRNL--SEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCEL 242
R L+L +N I+ + HL L L++N +RKI F +PSL L L L
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 243 TKLPVGISELVS-LQHLDLSESDIEELP---------------GELK-----------AL 275
T +P E +S L+ L L + IE +P GELK L
Sbjct: 96 TTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL 155
Query: 276 VNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEAS 320
VNL+ L+L NL IP ++ L RL+ L + G I+ S
Sbjct: 156 VNLRYLNLGMC-NLKDIPN--LTALVRLEELELSGNRLDLIRPGS 197
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 71/165 (43%), Gaps = 32/165 (19%)
Query: 185 KARRLSLMQNQIRNL--SEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCEL 242
R L+L +N I+ + HL L L++N +RKI F +PSL L L L
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 243 TKLPVGISELVS-LQHLDLSESDIEELP---------------GELK-----------AL 275
T +P E +S L+ L L + IE +P GELK L
Sbjct: 96 TTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL 155
Query: 276 VNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEAS 320
VNL+ L+L NL IP ++ L RL+ L + G I+ S
Sbjct: 156 VNLRYLNLGMC-NLKDIPN--LTALVRLEELELSGNRLDLIRPGS 197
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 37.0 bits (84), Expect = 0.027, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 197 RNLSEIPTCPHLLT--LFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGI-SELV 253
++L+ +PT T L+L +N + K+ F + L L+L + +LT LP G+ +L
Sbjct: 19 KSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 254 SLQHLDLSESDIEELPGELKALVNLKCL 281
L L L+++ ++ +P A NL+ L
Sbjct: 79 QLTQLSLNDNQLKSIP--RGAFDNLRSL 104
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 184 EKARRLSLMQNQIRNLSEIP--TCPHLLTLFLNE-NNLRKIHNDFFQFMPSLKVLNLSHC 240
K R L L N I ++ P L+ L L E L I F+ + +LK LNL C
Sbjct: 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206
Query: 241 ELTKLPVGISELVSLQHLDLSESDIEEL-PGELKALVNLK 279
+ +P ++ LV L+ L++S + E+ PG L +LK
Sbjct: 207 NIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 202 IPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGI-SELVSLQHLDL 260
IPT +L +L++N + K+ F + +LK L L +L LPVG+ L L LDL
Sbjct: 38 IPTNAQIL--YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95
Query: 261 SESDIEELPGEL-KALVNLK 279
+ + LP + LV+LK
Sbjct: 96 GTNQLTVLPSAVFDRLVHLK 115
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 207 HLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIE 266
L L L N L + + F + LK L + +LT+LP GI L L HL L ++ ++
Sbjct: 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148
Query: 267 ELP 269
+P
Sbjct: 149 SIP 151
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 8/124 (6%)
Query: 189 LSLMQNQIRNLSEIPTCPH--LLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246
L L +N + S P+ L L L+ L K+ D +P L L+LSH +L LP
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLP 93
Query: 247 VGISELVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTGN-LITIPRQLISNLSRLQ 304
+ L +L LD+S + + LP G L+ L L+ L L+ GN L T+P L++ +L+
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK--GNELKTLPPGLLTPTPKLE 151
Query: 305 VLRM 308
L +
Sbjct: 152 KLSL 155
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 187 RRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246
R SL +R L E L L+L N L+ + P L+ L+L++ LT+LP
Sbjct: 111 RLTSLPLGALRGLGE------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
Query: 247 VG-ISELVSLQHLDLSESDIEELP 269
G ++ L +L L L E+ + +P
Sbjct: 165 AGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 10/95 (10%)
Query: 212 FLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELPGE 271
FL EN++ K+ ++VL+L+H +LT L + +L+ + HLDLS + + LP
Sbjct: 429 FLLENSVLKME------YADVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALP-- 479
Query: 272 LKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVL 306
AL L+CL++ + ++NL RLQ L
Sbjct: 480 -PALAALRCLEVLQASDNALENVDGVANLPRLQEL 513
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 10/95 (10%)
Query: 212 FLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELPGE 271
FL EN++ K+ ++VL+L+H +LT L + +L+ + HLDLS + + LP
Sbjct: 429 FLLENSVLKME------YADVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALP-- 479
Query: 272 LKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVL 306
AL L+CL++ + ++NL RLQ L
Sbjct: 480 -PALAALRCLEVLQASDNALENVDGVANLPRLQEL 513
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 8/124 (6%)
Query: 189 LSLMQNQIRNLSEIPTCPH--LLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246
L L +N + S P+ L L L+ L K+ D +P L L+LSH +L LP
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLP 93
Query: 247 VGISELVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTGN-LITIPRQLISNLSRLQ 304
+ L +L LD+S + + LP G L+ L L+ L L+ GN L T+P L++ +L+
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK--GNELKTLPPGLLTPTPKLE 151
Query: 305 VLRM 308
L +
Sbjct: 152 KLSL 155
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 187 RRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246
R SL +R L E L L+L N L+ + P L+ L+L++ LT+LP
Sbjct: 111 RLTSLPLGALRGLGE------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
Query: 247 VG-ISELVSLQHLDLSESDIEELP 269
G ++ L +L L L E+ + +P
Sbjct: 165 AGLLNGLENLDTLLLQENSLYTIP 188
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 8/124 (6%)
Query: 189 LSLMQNQIRNLSEIPTCPH--LLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246
L L +N + S P+ L L L+ L K+ D +P L L+LSH +L LP
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLP 93
Query: 247 VGISELVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTGN-LITIPRQLISNLSRLQ 304
+ L +L LD+S + + LP G L+ L L+ L L+ GN L T+P L++ +L+
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK--GNELKTLPPGLLTPTPKLE 151
Query: 305 VLRM 308
L +
Sbjct: 152 KLSL 155
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 187 RRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246
R SL +R L E L L+L N L+ + P L+ L+L++ LT+LP
Sbjct: 111 RLTSLPLGALRGLGE------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
Query: 247 VG-ISELVSLQHLDLSESDIEELP 269
G ++ L +L L L E+ + +P
Sbjct: 165 AGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 229 MPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTG 287
+P L L+LSH +L LP+ L +L LD+S + + LP G L+ L L+ L L+ G
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK--G 133
Query: 288 N-LITIPRQLISNLSRLQVLRM 308
N L T+P L++ +L+ L +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSL 155
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 187 RRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246
R SL +R L E L L+L N L+ + P L+ L+L++ +LT+LP
Sbjct: 111 RLTSLPLGALRGLGE------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Query: 247 VG-ISELVSLQHLDLSESDIEELP 269
G ++ L +L L L E+ + +P
Sbjct: 165 AGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 229 MPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTG 287
+P L L+LSH +L LP+ L +L LD+S + + LP G L+ L L+ L L+ G
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK--G 133
Query: 288 N-LITIPRQLISNLSRLQVLRM 308
N L T+P L++ +L+ L +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSL 155
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 187 RRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246
R SL +R L E L L+L N L+ + P L+ L+L++ +LT+LP
Sbjct: 111 RLTSLPLGALRGLGE------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Query: 247 VG-ISELVSLQHLDLSESDIEELP 269
G ++ L +L L L E+ + +P
Sbjct: 165 AGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 229 MPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTG 287
+P L L+LSH +L LP+ L +L LD+S + + LP G L+ L L+ L L+ G
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK--G 133
Query: 288 N-LITIPRQLISNLSRLQVLRM 308
N L T+P L++ +L+ L +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSL 155
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 187 RRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246
R SL +R L E L L+L N L+ + P L+ L+L++ +LT+LP
Sbjct: 111 RLTSLPLGALRGLGE------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELP 164
Query: 247 VG-ISELVSLQHLDLSESDIEELP 269
G ++ L +L L L E+ + +P
Sbjct: 165 AGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 229 MPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTG 287
+P L L+LSH +L LP+ L +L LD+S + + LP G L+ L L+ L L+ G
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK--G 133
Query: 288 N-LITIPRQLISNLSRLQVLRM 308
N L T+P L++ +L+ L +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSL 155
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 187 RRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246
R SL +R L E L L+L N L+ + P L+ L+L++ LT+LP
Sbjct: 111 RLTSLPLGALRGLGE------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
Query: 247 VG-ISELVSLQHLDLSESDIEELP 269
G ++ L +L L L E+ + +P
Sbjct: 165 AGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 229 MPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTG 287
+P L L+LSH +L LP+ L +L LD+S + + LP G L+ L L+ +L G
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ--ELYLKG 133
Query: 288 N-LITIPRQLISNLSRLQVLRM 308
N L T+P L++ +L+ L +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSL 155
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 187 RRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246
R SL +R L E L L+L N L+ + P L+ L+L++ +LT+LP
Sbjct: 111 RLTSLPLGALRGLGE------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Query: 247 VG-ISELVSLQHLDLSESDIEELP 269
G ++ L +L L L E+ + +P
Sbjct: 165 AGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 229 MPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTG 287
+P L L+LSH +L LP+ L +L LD+S + + LP G L+ L L+ L L+ G
Sbjct: 77 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK--G 134
Query: 288 N-LITIPRQLISNLSRLQVLRM 308
N L T+P L++ +L+ L +
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSL 156
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 187 RRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246
R SL +R L E L L+L N L+ + P L+ L+L++ LT+LP
Sbjct: 112 RLTSLPLGALRGLGE------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 165
Query: 247 VG-ISELVSLQHLDLSESDIEELP 269
G ++ L +L L L E+ + +P
Sbjct: 166 AGLLNGLENLDTLLLQENSLYTIP 189
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 229 MPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTG 287
+P L L+LSH +L LP+ L +L LD+S + + LP G L+ L L+ +L G
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ--ELYLKG 133
Query: 288 N-LITIPRQLISNLSRLQVLRM 308
N L T+P L++ +L+ L +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSL 155
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 187 RRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246
R SL +R L E L L+L N L+ + P L+ L+L++ +LT+LP
Sbjct: 111 RLTSLPLGALRGLGE------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Query: 247 VG-ISELVSLQHLDLSESDIEELP 269
G ++ L +L L L E+ + +P
Sbjct: 165 AGLLNGLENLDTLLLQENSLYTIP 188
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 218 LRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEEL-PGELKALV 276
L I F+ + +L+ LNL+ C L ++P ++ L+ L LDLS + + + PG + L+
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM 231
Query: 277 NLK 279
+L+
Sbjct: 232 HLQ 234
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 189 LSLMQNQIRNL--SEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246
L+L NQ+R L + L L N++ K+ + Q +P LKVLNL H EL+++
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQIS 89
Query: 247 VGISEL-VSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTG 287
+L LDL + I ++ K NL LDL + G
Sbjct: 90 DQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNG 132
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 183 WE----KARRLSLMQNQIRNLSEIPTC----PHLLTLFLNENNLRKIHNDFFQFMPSLKV 234
WE + LSL NQ+ SE +L L L+ NNL + N F ++PSL+
Sbjct: 217 WELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRY 276
Query: 235 LNLSHCELTKL-PVGISELVSLQHLDL 260
L+L + + +L P L +L++L L
Sbjct: 277 LSLEYNNIQRLSPRSFYGLSNLRYLSL 303
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 198 NLSEIPTCPHLL-------TLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGI- 249
N+ E+P+ HL ++ N LR++ F MP LK LNL+ +L +P GI
Sbjct: 157 NIEEMPS--HLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIF 214
Query: 250 SELVSLQHL 258
L SLQ +
Sbjct: 215 DRLTSLQKI 223
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 215 ENNLRKIHNDFFQFMPSLKVLNLSH--CELTKLPVGISELVSLQHLDLSESDIEEL 268
E NL + N + +LK LN++H + KLP S L +L+HLDLS + I+ +
Sbjct: 111 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 215 ENNLRKIHNDFFQFMPSLKVLNLSH--CELTKLPVGISELVSLQHLDLSESDIEEL 268
E NL + N + +LK LN++H + KLP S L +L+HLDLS + I+ +
Sbjct: 110 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 215 ENNLRKIHNDFFQFMPSLKVLNLSH--CELTKLPVGISELVSLQHLDLSESDIEEL 268
E NL + N + +LK LN++H + KLP S L +L+HLDLS + I+ +
Sbjct: 110 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 215 ENNLRKIHNDFFQFMPSLKVLNLSH--CELTKLPVGISELVSLQHLDLSESDIEEL 268
E NL + N + +LK LN++H + KLP S L +L+HLDLS + I+ +
Sbjct: 111 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 189 LSLMQNQIRNL--SEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246
L+L NQ+R L + L +L + N + K+ + Q +P LKVLNL H EL++L
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89
Query: 247 VGISEL-VSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTG 287
+L L L + I+++ NL LDL + G
Sbjct: 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 189 LSLMQNQIRNL--SEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246
L+L NQ+R L + L +L + N + K+ + Q +P LKVLNL H EL++L
Sbjct: 40 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 99
Query: 247 VGISEL-VSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTG 287
+L L L + I+++ NL LDL + G
Sbjct: 100 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 142
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 215 ENNLRKIHNDFFQFMPSLKVLNLSH--CELTKLPVGISELVSLQHLDLSESDIEEL 268
E NL + N + +LK LN++H + KLP S L +L+HLDLS + I+ +
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 189 LSLMQNQIRNL--SEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246
L+L NQ+R L + L +L + N + K+ + Q +P LKVLNL H EL++L
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 94
Query: 247 VGISEL-VSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTG 287
+L L L + I+++ NL LDL + G
Sbjct: 95 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 137
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 189 LSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246
L + N++R+L T L L L+ N + +I DF F ++ L SH +L +P
Sbjct: 578 LDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP 635
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 206 PHLLTLFLNENNLR-----KIHNDFFQFMPSLKVLNLSHCELTKLPVGI-SELVSLQHLD 259
P L LFL EN L+ ++ D F+ + L+VL L+H L LP G+ S L +L+ L
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510
Query: 260 LSESDIEELP-GELKALVNLKCLDLEYTGNLITIPRQLIS 298
L+ + + L +L A NL+ LD+ L P +S
Sbjct: 511 LNSNRLTVLSHNDLPA--NLEILDISRNQLLAPNPDVFVS 548
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 188 RLSLMQNQ-IRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246
R+S + NQ N+++ LLTL L+ N LR I F + SL++L+L +++ +P
Sbjct: 65 RISTLSNQSFSNMTQ------LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Query: 247 VG-ISELVSLQHL 258
G ++L +L HL
Sbjct: 119 EGAFNDLSALSHL 131
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 180 VRGWEKARRLSLMQNQIRNLSEIPTC--PHLLTLFLNENNLRKIHNDF--FQFMPSLKVL 235
++G ++L L N L +I P L L++ N++K+H + + +L+ L
Sbjct: 294 MKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYI-RGNVKKLHLGVGCLEKLGNLQTL 352
Query: 236 NLSHCELTK---LPVGISELVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTGNLIT 291
+LSH ++ + + L LQ L+LS ++ L + K L+ LDL +T I
Sbjct: 353 DLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHIN 412
Query: 292 IPRQLISNLSRLQVLRM 308
P+ NL LQVL +
Sbjct: 413 APQSPFQNLHFLQVLNL 429
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 26/128 (20%)
Query: 184 EKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCE 241
E + L L N+I +S ++ C +L L L N + I D F
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF--------------- 96
Query: 242 LTKLPVGISELVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNL 300
S L SL+HLDLS + + L K L +L L+L L S+L
Sbjct: 97 --------SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148
Query: 301 SRLQVLRM 308
++LQ+LR+
Sbjct: 149 TKLQILRV 156
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 193 QNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISEL 252
N I +++ + P L +L+L N + I + L L+L +++ + V ++ L
Sbjct: 118 HNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VPLAGL 174
Query: 253 VSLQHLDLSESDIEELPGELKALVNLKCLDL 283
LQ+L LS++ I +L+AL LK LD+
Sbjct: 175 TKLQNLYLSKNHIS----DLRALAGLKNLDV 201
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 13/140 (9%)
Query: 171 GVGLVRAPDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMP 230
G G+ V+ L L NQI +L+ + + L L+ N L+ + +
Sbjct: 50 GTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--AIAGLQ 107
Query: 231 SLKVLNLSHCELTKLP--VGISELVSLQHLDLSE-SDIEELPGELKALVNLKCLDLEYTG 287
S+K L+L+ ++T + G+S L L +LDL++ ++I L G L NL+ L + G
Sbjct: 108 SIKTLDLTSTQITDVTPLAGLSNLQVL-YLDLNQITNISPLAG----LTNLQYLSI---G 159
Query: 288 NLITIPRQLISNLSRLQVLR 307
N ++NLS+L L+
Sbjct: 160 NAQVSDLTPLANLSKLTTLK 179
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 166 FFVYAGVGLVRAPDVRGWEKARRLSL-MQNQI------RNLSEIPTCPHLLTLFLNENNL 218
+ + + G+ PDV +++ L +Q+ I RN S + + L+LN+N +
Sbjct: 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-SFVGLSFESVILWLNKNGI 166
Query: 219 RKIHNDFFQFMPSLKVLNLS-HCELTKLPVGISELVSLQH-LDLSESDIEELPGELKALV 276
++IHN F L LNLS + L +LP + S LD+S + I LP L
Sbjct: 167 QEIHNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLE 223
Query: 277 NLKCLDLEYTGNLITIP 293
NLK L T NL +P
Sbjct: 224 NLKKLRARSTYNLKKLP 240
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 26/128 (20%)
Query: 184 EKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCE 241
E + L L N+I +S ++ C +L L L N + I D F
Sbjct: 26 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF--------------- 70
Query: 242 LTKLPVGISELVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNL 300
S L SL+HLDLS + + L K L +L L+L L S+L
Sbjct: 71 --------SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 122
Query: 301 SRLQVLRM 308
++LQ+LR+
Sbjct: 123 TKLQILRV 130
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 194 NQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELV 253
N+IR L P L TL +N N + +I Q +P L L L++ L +L + L
Sbjct: 52 NEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG-DLDPLA 110
Query: 254 SLQHL 258
SL+ L
Sbjct: 111 SLKSL 115
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 31/155 (20%)
Query: 189 LSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSH---CELTKL 245
L + +N LSE+P P+L L + N +R + PSL+ LN+S+ EL L
Sbjct: 282 LDVSENIFSGLSELP--PNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLIELPAL 335
Query: 246 PVGISELV-SLQHLDLSESDIEELPGELKAL------------VNLKCLDLEYTGNLITI 292
P + L+ S HL +++ ELP LK L + DL +L +
Sbjct: 336 PPRLERLIASFNHL----AEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEV 391
Query: 293 PRQLISNLSRLQV----LRMFGASHKAIKEASENS 323
P +L NL +L V LR F +++++ NS
Sbjct: 392 P-ELPQNLKQLHVETNPLREFPDIPESVEDLRMNS 425
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 193 QNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISEL 252
N + L E+ P L T++ +NNL K D PSL+ LN+ LT LP EL
Sbjct: 224 NNILEELPELQNLPFLTTIYA-DNNLLKTLPDL---PPSLEALNVRDNYLTDLP----EL 275
Query: 253 V-SLQHLDLSE---SDIEELPGELKAL 275
SL LD+SE S + ELP L L
Sbjct: 276 PQSLTFLDVSENIFSGLSELPPNLYYL 302
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 185 KARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTK 244
K LS+ +N+++NL+ IP+ L LFL+ N LR D + +L++L++ + +L
Sbjct: 86 KLEELSVNRNRLKNLNGIPSA-CLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS 142
Query: 245 LPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDL 283
+ V + L L+ LDL ++I G L L + +DL
Sbjct: 143 I-VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDL 179
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 188 RLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHN--DFFQFMPSLKVLNLSHCEL 242
R S M +R + E P LL+L L+ N L ++ + Q P+LK+LNLS EL
Sbjct: 154 RRSSMAATLRIIEE--NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 208
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 193 QNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISEL 252
N I +++ + P L +L+L N + I + L L+L +++ + V ++ L
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI-VPLAGL 177
Query: 253 VSLQHLDLSESDIEELPGELKALVNLKCLDL 283
LQ+L LS++ I +L+AL LK LD+
Sbjct: 178 TKLQNLYLSKNHIS----DLRALAGLKNLDV 204
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 198 NLSEIPTC--PHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPV 247
L+ +P C H+ TL + +NNL + P L+ L +S +LT LPV
Sbjct: 51 GLTTLPDCLPAHITTLVIPDNNLTSLP----ALPPELRTLEVSGNQLTSLPV 98
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 207 HLLTLFLNENNLRK--IHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLD---LS 261
++ + L N L+ I N FQ M L + ++ +T +P G+ ++ HLD ++
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT 205
Query: 262 ESDIEELPGELKALVNLKCLDLEY-------TGNLITIP--RQLISNLSRLQVLRMFGAS 312
+ D LK L NL L L + G+L P R+L N ++L + A
Sbjct: 206 KVDA----ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261
Query: 313 HKAIK 317
HK I+
Sbjct: 262 HKYIQ 266
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 207 HLLTLFLNENNLRK--IHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLD---LS 261
++ + L N L+ I N FQ M L + ++ +T +P G+ ++ HLD ++
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT 205
Query: 262 ESDIEELPGELKALVNLKCLDLEY-------TGNLITIP--RQLISNLSRLQVLRMFGAS 312
+ D LK L NL L L + G+L P R+L N ++L + A
Sbjct: 206 KVDA----ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261
Query: 313 HKAIK 317
HK I+
Sbjct: 262 HKYIQ 266
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 188 RLSLMQNQIRNL--SEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELT-K 244
+L L +NQ+ + + H+ L L EN +++I N F + LK LNL +++
Sbjct: 58 KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117
Query: 245 LPVGISELVSLQHLDLSES 263
+P L SL L+L+ +
Sbjct: 118 MPGSFEHLNSLTSLNLASN 136
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 188 RLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHN--DFFQFMPSLKVLNLSHCEL 242
R S M +R + E P LL+L L+ N L ++ + Q P+LK+LNLS EL
Sbjct: 154 RRSSMAATLRIIEE--NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 208
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 188 RLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHN--DFFQFMPSLKVLNLSHCEL 242
R S M +R + E P LL+L L+ N L ++ + Q P+LK+LNLS EL
Sbjct: 154 RRSCMAATLRIIEE--NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 208
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 188 RLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHN--DFFQFMPSLKVLNLSHCEL 242
R S M +R + E P LL+L L+ N L ++ + Q P+LK+LNLS EL
Sbjct: 148 RRSCMAATLRIIEE--NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 202
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 211 LFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP-VGISELVSLQHLDLSESDIEEL- 268
L+L +NNL+ + ++ F+ + +L L L + +P L SL L L ++ + +
Sbjct: 133 LYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVH 192
Query: 269 PGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRM 308
P + L L L L + NL +P +++ L LQ LR+
Sbjct: 193 PHAFRDLGRLMTLYL-FANNLSMLPAEVLVPLRSLQYLRL 231
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 180 VRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSH 239
V+ K + L++ NQI ++S + L +LFLN N L + + +L L LS
Sbjct: 261 VKDLTKLKXLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQ 320
Query: 240 CELTKL 245
+T +
Sbjct: 321 NHITDI 326
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 188 RLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHN--DFFQFMPSLKVLNLSHCEL 242
R S M +R + E P LL+L L+ N L ++ + Q P+LK+LNLS EL
Sbjct: 148 RRSCMAATLRIIEE--NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 202
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 19/175 (10%)
Query: 364 LRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSL 423
L T L FN+ + ++ L L LNRL+++++ I + + +QQ +F S
Sbjct: 103 LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSN 161
Query: 424 NMVEI-------------CNCIKLKDLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVP 470
+ ++ + K+ D++ L NL+S+ + + + +I G +
Sbjct: 162 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL-IATNNQISDITPLGILTNLD 220
Query: 471 EVMANLNPFEKLQNLEVAGARNLKSIYWKPLPFPHLKAMSFLHCKKLKKLPLDSN 525
E+ N N + + L A NL + +L +S L KL +L L +N
Sbjct: 221 ELSLNGNQLKDIGTL--ASLTNLTDLDLANNQISNLAPLSGL--TKLTELKLGAN 271
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 19/175 (10%)
Query: 364 LRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSL 423
L T L FN+ + ++ L L LNRL+++++ I + + +QQ +F S
Sbjct: 103 LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSN 161
Query: 424 NMVEI-------------CNCIKLKDLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVP 470
+ ++ + K+ D++ L NL+S+ + + + +I G +
Sbjct: 162 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL-IATNNQISDITPLGILTNLD 220
Query: 471 EVMANLNPFEKLQNLEVAGARNLKSIYWKPLPFPHLKAMSFLHCKKLKKLPLDSN 525
E+ N N + + L A NL + +L +S L KL +L L +N
Sbjct: 221 ELSLNGNQLKDIGTL--ASLTNLTDLDLANNQISNLAPLSGL--TKLTELKLGAN 271
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 166 FFVYAGVGLVRAPDVRGWEKARRLSL-MQNQI------RNLSEIPTCPHLLTLFLNENNL 218
+ + + G+ PDV +++ L +Q+ I RN S + + L+LN+N +
Sbjct: 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-SFVGLSFESVILWLNKNGI 166
Query: 219 RKIHNDFFQFMPSLKVLNLS-HCELTKLPVGISELVSLQH-LDLSESDIEELPGELKALV 276
++IHN F L LNLS + L +LP + S LD+S + I LP L
Sbjct: 167 QEIHNCAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLE 223
Query: 277 NLKCLDLEYTGNLITIP 293
NLK L T NL +P
Sbjct: 224 NLKKLRARSTYNLKKLP 240
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 21/110 (19%)
Query: 226 FQFMPSLKVLNLSHCELTK----LPVGISEL-------VSLQHLDLSESDIEELPGELKA 274
FQ + L+VLNLSHC L L G+ +L S Q +S++++ ++ G L+
Sbjct: 420 FQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEI 479
Query: 275 LVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSI 324
L+ C NL++I +Q L + L + SH ++ S +++
Sbjct: 480 LILSSC-------NLLSIDQQAFHGLRNVNHLDL---SHNSLTGDSMDAL 519
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 157 CDIEKEKENFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNL-SEIPTCPHLLTLFLNE 215
CD+ E N + L + R + + + L L + L S I L L LN
Sbjct: 251 CDMSVESINLQKHRFSDL-SSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNA 309
Query: 216 NNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVG---ISELVSLQHLDLSESDIEELPG-- 270
N+ ++ PSL+ L + + KL +G + +L +LQ LDLS SDIE
Sbjct: 310 NSFDQLCQINAASFPSLRDLYIK-GNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCN 368
Query: 271 -ELKALVNLKCLDLEY 285
+LK L +L+ L+L Y
Sbjct: 369 LQLKNLRHLQYLNLSY 384
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 208 LLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLS 261
L L + ++ LR + D F F P L LNLS L L + +SLQ L LS
Sbjct: 58 LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLS 111
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 193 QNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISEL 252
N I +++ + P L +L+L N + I + L L+L +++ + V ++ L
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI-VPLAGL 177
Query: 253 VSLQHLDLSESDIEELPGELKALVNLKCLDL 283
LQ+L LS++ I +L+AL LK LD+
Sbjct: 178 TKLQNLYLSKNHI----SDLRALAGLKNLDV 204
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 193 QNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISEL 252
N I +++ + P L +L+L N + I + L L+L +++ + V ++ L
Sbjct: 119 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI-VPLAGL 175
Query: 253 VSLQHLDLSESDIEELPGELKALVNLKCLDL 283
LQ+L LS++ I +L+AL LK LD+
Sbjct: 176 TKLQNLYLSKNHI----SDLRALAGLKNLDV 202
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 189 LSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKI 221
L+L NQI ++S I P++ LFLN N L I
Sbjct: 71 LNLSNNQITDISPIQYLPNVTKLFLNGNKLTDI 103
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 193 QNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISEL 252
N I +++ + P L +L+L N + I + L L+L +++ + V ++ L
Sbjct: 141 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI-VPLAGL 197
Query: 253 VSLQHLDLSESDIEELPGELKALVNLKCLDL 283
LQ+L LS++ I +L+AL LK LD+
Sbjct: 198 TKLQNLYLSKNHI----SDLRALAGLKNLDV 224
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 193 QNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISEL 252
N I +++ + P L +L+L N + I + L L+L ++ ++ V ++ L
Sbjct: 119 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRI-VPLARL 175
Query: 253 VSLQHLDLSESDIEELPGELKALVNLKCLDL 283
LQ+L LS++ I +L L+ L NL L+L
Sbjct: 176 TKLQNLYLSKNHISDLRA-LRGLKNLDVLEL 205
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 193 QNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISEL 252
N I +++ + P L +L+L N + I + L L+L +++ + V ++ L
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI-VPLAGL 195
Query: 253 VSLQHLDLSESDIEELPGELKALVNLKCLDL 283
LQ+L LS++ I +L+AL LK LD+
Sbjct: 196 TKLQNLYLSKNHIS----DLRALAGLKNLDV 222
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 177 APDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLN 236
AP + G K L L NQI N+S + L L LNEN L I + +L L
Sbjct: 254 AP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS--PISNLKNLTYLT 310
Query: 237 LSHCELTKL-PVGISELVSLQHLDLSESDIEELPGELKALVNLKCL 281
L ++ + PV S L LQ L S + + ++ L L N+ L
Sbjct: 311 LYFNNISDISPV--SSLTKLQRLFFSNNKVSDV-SSLANLTNINWL 353
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 193 QNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISEL 252
N I +++ + P L +L+L N + I + L L+L +++ + V ++ L
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI-VPLAGL 195
Query: 253 VSLQHLDLSESDIEELPGELKALVNLKCLDL 283
LQ+L LS++ I +L+AL LK LD+
Sbjct: 196 TKLQNLYLSKNHIS----DLRALAGLKNLDV 222
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 193 QNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISEL 252
N I +++ + P L +L+L N + I + L L+L +++ + V ++ L
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI-VPLAGL 195
Query: 253 VSLQHLDLSESDIEELPGELKALVNLKCLDL 283
LQ+L LS++ I +L+AL LK LD+
Sbjct: 196 TKLQNLYLSKNHIS----DLRALAGLKNLDV 222
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 19/175 (10%)
Query: 364 LRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSL 423
L T L FN+ + ++ L L LNRL+++++ I + + +QQ F S
Sbjct: 103 LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSN 161
Query: 424 NMVEI-------------CNCIKLKDLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVP 470
+ ++ + K+ D++ L NL+S+ + + + +I G +
Sbjct: 162 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL-IATNNQISDITPLGILTNLD 220
Query: 471 EVMANLNPFEKLQNLEVAGARNLKSIYWKPLPFPHLKAMSFLHCKKLKKLPLDSN 525
E+ N N + + L A NL + +L +S L KL +L L +N
Sbjct: 221 ELSLNGNQLKDIGTL--ASLTNLTDLDLANNQISNLAPLSGL--TKLTELKLGAN 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,563,861
Number of Sequences: 62578
Number of extensions: 617357
Number of successful extensions: 1423
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 1201
Number of HSP's gapped (non-prelim): 245
length of query: 562
length of database: 14,973,337
effective HSP length: 104
effective length of query: 458
effective length of database: 8,465,225
effective search space: 3877073050
effective search space used: 3877073050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)