Query 046723
Match_columns 562
No_of_seqs 339 out of 3209
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 03:52:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3E-61 6.6E-66 518.5 23.8 534 2-555 336-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.2E-45 2.6E-50 419.1 30.1 455 3-523 370-912 (1153)
3 PLN00113 leucine-rich repeat r 99.9 1.2E-21 2.5E-26 223.3 17.2 308 182-515 116-439 (968)
4 PLN00113 leucine-rich repeat r 99.9 2.1E-21 4.5E-26 221.2 17.9 281 165-456 121-416 (968)
5 PLN03210 Resistant to P. syrin 99.8 1E-19 2.3E-24 207.7 20.0 324 164-521 591-947 (1153)
6 KOG0444 Cytoskeletal regulator 99.8 5.6E-22 1.2E-26 195.6 -1.9 311 182-522 53-380 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 7.8E-21 1.7E-25 187.6 -0.9 294 177-512 96-394 (1255)
8 KOG4194 Membrane glycoprotein 99.8 2.7E-20 5.9E-25 182.6 2.6 144 171-315 111-259 (873)
9 KOG4194 Membrane glycoprotein 99.8 1.8E-19 4E-24 176.8 3.9 322 180-523 98-434 (873)
10 KOG0472 Leucine-rich repeat pr 99.8 4.9E-20 1.1E-24 173.2 -1.9 322 177-515 199-539 (565)
11 PF00931 NB-ARC: NB-ARC domain 99.7 1E-17 2.2E-22 163.6 1.9 108 4-112 178-285 (287)
12 KOG0472 Leucine-rich repeat pr 99.6 1.8E-17 3.9E-22 156.1 -6.4 261 185-491 46-308 (565)
13 KOG0617 Ras suppressor protein 99.6 9E-17 1.9E-21 134.2 -3.0 166 175-359 24-192 (264)
14 PRK15387 E3 ubiquitin-protein 99.6 2.5E-14 5.4E-19 152.6 13.5 254 164-491 203-456 (788)
15 PRK15387 E3 ubiquitin-protein 99.5 5.4E-14 1.2E-18 150.0 14.0 256 185-516 202-457 (788)
16 KOG4658 Apoptotic ATPase [Sign 99.5 6.6E-15 1.4E-19 160.3 6.3 327 165-523 526-866 (889)
17 KOG0618 Serine/threonine phosp 99.5 3.1E-16 6.7E-21 162.4 -5.6 100 185-285 46-146 (1081)
18 PRK15370 E3 ubiquitin-protein 99.5 7.3E-14 1.6E-18 149.9 12.0 219 186-454 180-398 (754)
19 KOG0618 Serine/threonine phosp 99.5 3.6E-15 7.8E-20 154.6 0.2 266 185-492 220-488 (1081)
20 PRK15370 E3 ubiquitin-protein 99.5 1E-13 2.2E-18 148.9 9.6 241 165-455 181-426 (754)
21 KOG0617 Ras suppressor protein 99.5 2.2E-15 4.7E-20 126.0 -3.2 160 195-375 22-182 (264)
22 KOG4237 Extracellular matrix p 99.3 4.2E-13 9.1E-18 126.8 -1.7 127 185-312 68-199 (498)
23 cd00116 LRR_RI Leucine-rich re 99.3 3.2E-12 7E-17 126.9 4.5 62 205-266 22-94 (319)
24 cd00116 LRR_RI Leucine-rich re 99.2 1E-11 2.2E-16 123.4 4.9 215 226-455 19-261 (319)
25 KOG4237 Extracellular matrix p 99.2 6.8E-12 1.5E-16 118.8 1.4 257 164-431 69-356 (498)
26 KOG4341 F-box protein containi 99.1 1.2E-11 2.6E-16 118.1 -1.5 290 206-519 138-441 (483)
27 PF14580 LRR_9: Leucine-rich r 99.0 1.7E-10 3.6E-15 101.3 3.9 126 182-310 17-149 (175)
28 PF14580 LRR_9: Leucine-rich r 99.0 7.6E-10 1.7E-14 97.2 6.0 124 163-286 20-150 (175)
29 KOG0532 Leucine-rich repeat (L 98.8 2E-10 4.3E-15 113.9 -4.3 175 181-376 95-270 (722)
30 KOG4341 F-box protein containi 98.8 3.3E-10 7.1E-15 108.4 -3.1 262 231-519 139-416 (483)
31 KOG3207 Beta-tubulin folding c 98.8 1.1E-09 2.4E-14 105.5 0.0 202 182-398 119-333 (505)
32 KOG3207 Beta-tubulin folding c 98.8 1.5E-09 3.3E-14 104.5 0.9 206 203-451 118-333 (505)
33 KOG0532 Leucine-rich repeat (L 98.7 1.1E-09 2.4E-14 108.7 -1.3 127 184-314 121-247 (722)
34 COG4886 Leucine-rich repeat (L 98.7 1.1E-08 2.3E-13 104.8 4.1 120 189-311 98-219 (394)
35 KOG2120 SCF ubiquitin ligase, 98.7 2.5E-09 5.5E-14 97.9 -0.9 145 332-490 226-373 (419)
36 KOG1259 Nischarin, modulator o 98.6 4E-09 8.6E-14 96.7 -0.4 133 206-357 284-416 (490)
37 KOG1259 Nischarin, modulator o 98.6 1.1E-08 2.3E-13 94.0 1.6 133 334-491 278-410 (490)
38 KOG1909 Ran GTPase-activating 98.6 1.6E-08 3.4E-13 95.0 2.3 162 180-353 26-226 (382)
39 COG4886 Leucine-rich repeat (L 98.6 3.3E-08 7.2E-13 101.2 4.5 176 180-378 112-289 (394)
40 KOG2120 SCF ubiquitin ligase, 98.6 7.1E-09 1.5E-13 95.1 -0.7 181 231-455 186-374 (419)
41 PF13855 LRR_8: Leucine rich r 98.5 8.5E-08 1.8E-12 69.0 3.8 58 207-264 2-60 (61)
42 PLN03150 hypothetical protein; 98.4 9.9E-07 2.1E-11 94.8 9.2 107 207-313 419-527 (623)
43 PF13855 LRR_8: Leucine rich r 98.2 1.3E-06 2.9E-11 62.7 3.9 59 184-242 1-61 (61)
44 KOG1909 Ran GTPase-activating 98.2 6.9E-07 1.5E-11 84.2 2.5 39 202-240 26-68 (382)
45 KOG0531 Protein phosphatase 1, 98.2 2E-07 4.3E-12 95.7 -1.7 122 187-313 75-198 (414)
46 KOG0531 Protein phosphatase 1, 98.2 1.9E-07 4.1E-12 95.8 -1.8 213 204-453 70-286 (414)
47 PLN03150 hypothetical protein; 98.2 4E-06 8.7E-11 90.2 8.1 109 185-293 419-532 (623)
48 KOG1859 Leucine-rich repeat pr 98.1 1.2E-07 2.7E-12 97.0 -5.2 175 177-377 102-290 (1096)
49 PF12799 LRR_4: Leucine Rich r 98.1 4.6E-06 9.9E-11 54.9 3.5 39 231-269 2-40 (44)
50 KOG2982 Uncharacterized conser 98.0 2.5E-06 5.4E-11 78.7 1.7 104 210-313 49-158 (418)
51 KOG3665 ZYG-1-like serine/thre 97.9 3.6E-06 7.8E-11 90.4 1.4 105 206-312 122-231 (699)
52 KOG3665 ZYG-1-like serine/thre 97.9 8E-06 1.7E-10 87.7 3.8 130 184-314 122-263 (699)
53 PRK15386 type III secretion pr 97.8 9.5E-05 2.1E-09 73.4 8.7 138 336-514 48-187 (426)
54 PF12799 LRR_4: Leucine Rich r 97.8 3.8E-05 8.1E-10 50.6 3.9 40 206-246 1-40 (44)
55 PRK15386 type III secretion pr 97.7 8.9E-05 1.9E-09 73.6 7.7 73 226-310 48-121 (426)
56 KOG1644 U2-associated snRNP A' 97.7 7.1E-05 1.5E-09 65.5 5.3 101 185-285 43-149 (233)
57 KOG2982 Uncharacterized conser 97.7 2E-05 4.3E-10 72.9 2.0 99 188-286 49-156 (418)
58 KOG4579 Leucine-rich repeat (L 97.7 7E-06 1.5E-10 67.0 -0.9 109 186-295 29-141 (177)
59 KOG1859 Leucine-rich repeat pr 97.6 1.4E-06 3E-11 89.6 -6.5 129 182-314 162-292 (1096)
60 KOG1947 Leucine rich repeat pr 97.6 1.9E-05 4E-10 83.2 1.2 85 228-312 186-280 (482)
61 KOG1947 Leucine rich repeat pr 97.3 6.2E-05 1.3E-09 79.3 0.2 240 251-521 186-444 (482)
62 KOG4579 Leucine-rich repeat (L 97.3 4E-05 8.6E-10 62.7 -1.1 108 206-315 27-137 (177)
63 KOG1644 U2-associated snRNP A' 97.2 0.00048 1E-08 60.5 4.6 105 206-313 42-152 (233)
64 COG5238 RNA1 Ran GTPase-activa 97.0 0.00032 6.9E-09 64.3 1.7 86 367-455 186-283 (388)
65 KOG2123 Uncharacterized conser 96.9 9.1E-05 2E-09 68.0 -2.6 104 205-311 18-127 (388)
66 KOG2739 Leucine-rich acidic nu 96.8 0.00069 1.5E-08 62.1 2.6 82 184-265 43-128 (260)
67 COG5238 RNA1 Ran GTPase-activa 96.6 0.0033 7.2E-08 57.8 5.1 84 183-266 29-133 (388)
68 KOG2123 Uncharacterized conser 96.2 0.00081 1.8E-08 61.9 -1.1 103 275-398 18-124 (388)
69 KOG2739 Leucine-rich acidic nu 96.2 0.0026 5.6E-08 58.4 2.0 108 204-313 41-155 (260)
70 KOG3864 Uncharacterized conser 96.1 0.00076 1.7E-08 59.3 -1.8 67 386-456 120-188 (221)
71 PF00560 LRR_1: Leucine Rich R 95.8 0.0044 9.6E-08 33.8 0.9 19 232-250 2-20 (22)
72 PF13306 LRR_5: Leucine rich r 95.2 0.074 1.6E-06 44.4 7.2 100 204-309 10-111 (129)
73 PF00560 LRR_1: Leucine Rich R 95.0 0.01 2.3E-07 32.3 0.8 21 254-274 1-21 (22)
74 PF13504 LRR_7: Leucine rich r 94.5 0.026 5.6E-07 28.5 1.5 17 504-521 1-17 (17)
75 KOG3864 Uncharacterized conser 94.3 0.013 2.9E-07 51.7 0.3 40 365-404 150-189 (221)
76 PF13504 LRR_7: Leucine rich r 94.0 0.039 8.4E-07 27.9 1.5 15 231-245 2-16 (17)
77 PF13306 LRR_5: Leucine rich r 93.6 0.22 4.8E-06 41.5 6.5 117 180-303 8-128 (129)
78 KOG0473 Leucine-rich repeat pr 92.0 0.0041 8.9E-08 55.9 -6.5 85 202-287 38-122 (326)
79 KOG0473 Leucine-rich repeat pr 90.2 0.01 2.2E-07 53.4 -5.7 95 218-314 30-124 (326)
80 smart00370 LRR Leucine-rich re 87.9 0.47 1E-05 26.8 2.1 19 253-271 2-20 (26)
81 smart00369 LRR_TYP Leucine-ric 87.9 0.47 1E-05 26.8 2.1 19 253-271 2-20 (26)
82 smart00369 LRR_TYP Leucine-ric 87.3 0.47 1E-05 26.8 1.8 21 229-249 1-21 (26)
83 smart00370 LRR Leucine-rich re 87.3 0.47 1E-05 26.8 1.8 21 229-249 1-21 (26)
84 smart00367 LRR_CC Leucine-rich 82.9 0.78 1.7E-05 26.0 1.3 16 504-519 2-17 (26)
85 PRK04841 transcriptional regul 73.4 19 0.00041 41.3 10.1 123 9-156 206-332 (903)
86 smart00364 LRR_BAC Leucine-ric 69.3 3.2 6.9E-05 23.5 1.3 17 231-247 3-19 (26)
87 KOG4308 LRR-containing protein 64.5 0.3 6.6E-06 50.7 -6.2 183 185-378 88-302 (478)
88 KOG4308 LRR-containing protein 63.9 0.3 6.6E-06 50.7 -6.4 183 184-378 115-330 (478)
89 PF13516 LRR_6: Leucine Rich r 59.3 4.9 0.00011 22.0 0.8 12 254-265 3-14 (24)
90 smart00365 LRR_SD22 Leucine-ri 57.4 8.8 0.00019 21.8 1.6 14 230-243 2-15 (26)
91 smart00368 LRR_RI Leucine rich 43.8 19 0.0004 20.7 1.6 13 230-242 2-14 (28)
92 KOG4062 6-O-methylguanine-DNA 29.9 62 0.0013 27.7 3.2 25 6-35 108-132 (178)
93 PF12221 HflK_N: Bacterial mem 26.3 65 0.0014 20.8 2.1 19 3-21 19-37 (42)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3e-61 Score=518.50 Aligned_cols=534 Identities=41% Similarity=0.695 Sum_probs=437.0
Q ss_pred CCChhHHHHHHHHHHHcCCchhHHHHHHHHhcCCCChhHHHHHHHHHhcc-CCCCCCCccchhhhhhhhccCCCchhhhh
Q 046723 2 NSHPDILQLAQTAARECGGLPLALITIGRAMACKKTPEEWSYAIEVLRTS-SSQFPGLGNEVYPLLKFSYDSLPSDTIRS 80 (562)
Q Consensus 2 ~~~~~l~~i~~~i~~~c~GlPLai~~ig~~L~~~~~~~~W~~~l~~l~~~-~~~~~~~~~~i~~~L~~sy~~L~~~~~k~ 80 (562)
++.+.++++|++||++|+|+|||++++|+.|+.|.+..+|+++.+.+.+. ....++..+.|+++|++|||+||+ ++|.
T Consensus 336 ~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~ 414 (889)
T KOG4658|consen 336 GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-ELKS 414 (889)
T ss_pred cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH-HHHH
Confidence 34566999999999999999999999999999999999999999999887 555556678999999999999996 5999
Q ss_pred hhhhhcccCCCccccHHHHHHHHHHCCCccc-CCCchhhHhhHHHHHHHHHhccccccC----CCcEEEchhHHHHHHHH
Q 046723 81 CHLYCSLYPEDYCISKEKLIDCWIGERLLTE-RDRTGEQKEGYHILGILLHACLLEEGG----GGEVKMHDVIRDMALWI 155 (562)
Q Consensus 81 cfl~~a~fp~~~~~~~~~Li~~wiaeg~~~~-~~~~~~~~~~~~~~~~L~~~~l~~~~~----~~~~~mhdl~~~l~~~~ 155 (562)
||+|||.||+||.|+++.|+.+|+||||++. .++..+++.|+.|+++|++++++.... ...|+|||++|++|.++
T Consensus 415 CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~i 494 (889)
T KOG4658|consen 415 CFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWI 494 (889)
T ss_pred HHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHH
Confidence 9999999999999999999999999999999 678999999999999999999998864 48999999999999999
Q ss_pred hcccccccccEEEeeccccccCCCccccccceEEeccccccccCCCCCCCccccEEEccccC--ccccchhhhcCCCCCc
Q 046723 156 ACDIEKEKENFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENN--LRKIHNDFFQFMPSLK 233 (562)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~--l~~~~~~~~~~l~~L~ 233 (562)
+++.+..+++.+...+.+....+....+...|+.++.++.+..++.-..++.|++|.+.++. +..++..+|..++.|+
T Consensus 495 as~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~Lr 574 (889)
T KOG4658|consen 495 ASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLR 574 (889)
T ss_pred hccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceE
Confidence 99877766776666655666678888889999999999999998888888899999999886 7788888899999999
Q ss_pred EEEecCC-CCcccCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCC
Q 046723 234 VLNLSHC-ELTKLPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGAS 312 (562)
Q Consensus 234 ~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~ 312 (562)
+||+++| .+.++|.+|++|.+||||+++++.++.+|.++++|.+|.+|++..+..+..+|. ....+++||+|.+....
T Consensus 575 VLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 575 VLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA 653 (889)
T ss_pred EEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccc
Confidence 9999988 888999999999999999999999999999999999999999999877777754 36679999999998654
Q ss_pred ccchhcccccccccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcc
Q 046723 313 HKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQ 392 (562)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~ 392 (562)
.. .+.....++.++++|+.+.+.......+..+.....+....+.+.+.++....... .+..+.+
T Consensus 654 ~~-------------~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~--~~~~l~~ 718 (889)
T KOG4658|consen 654 LS-------------NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLIS--SLGSLGN 718 (889)
T ss_pred cc-------------cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeec--ccccccC
Confidence 22 24557788889999998888765553334444444444445555554433333332 5788999
Q ss_pred cCeeeeccccccceeeccchhhhhhh-hhccccEEEEecCCCCCCCccccccCCCceEEEecCcchhhhhcCCCCCCccc
Q 046723 393 LNRLQIANSVILEELKMDYAEEVQQF-AFRSLNMVEICNCIKLKDLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPE 471 (562)
Q Consensus 393 L~~L~l~~~~~l~~l~~~~~~~~~~~-~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~ 471 (562)
|+.|.+.+|...+.. ..+....... .|+++.++.+.+|...+++.|....|+|+.|.+.+|..++++++...... .
T Consensus 719 L~~L~i~~~~~~e~~-~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~--~ 795 (889)
T KOG4658|consen 719 LEELSILDCGISEIV-IEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALL--E 795 (889)
T ss_pred cceEEEEcCCCchhh-cccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhh--h
Confidence 999999999554322 2222211112 37789999999999999999998999999999999999999876332211 1
Q ss_pred cccCCCCcccccee-eccCCcCCcccCcCCCCCCCcceeeeccCCCCccccCCCcc--ccc-cceEEEehhhhhccCccC
Q 046723 472 VMANLNPFEKLQNL-EVAGARNLKSIYWKPLPFPHLKAMSFLHCKKLKKLPLDSNS--AKE-RKIVISGERNWREQLQWE 547 (562)
Q Consensus 472 ~~~~~~~~~~L~~L-~l~~c~~L~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~--~~~-~~~~i~~~~~~~~~~~~~ 547 (562)
.......|.++..+ .+.+.+.+..+......++.|+.+.+..||++.++|..... ... .......+.+|.+.++|.
T Consensus 796 l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~ 875 (889)
T KOG4658|consen 796 LKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWE 875 (889)
T ss_pred cccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEeh
Confidence 11134567888888 58888888888888888899999999999999999999765 222 333444445799999999
Q ss_pred chhhHhhh
Q 046723 548 DEATRNAF 555 (562)
Q Consensus 548 ~~~~~~~~ 555 (562)
++.+..++
T Consensus 876 ~~~~~~~~ 883 (889)
T KOG4658|consen 876 DELTKLRF 883 (889)
T ss_pred hhhhhhhc
Confidence 99887766
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.2e-45 Score=419.14 Aligned_cols=455 Identities=22% Similarity=0.313 Sum_probs=289.2
Q ss_pred CChhHHHHHHHHHHHcCCchhHHHHHHHHhcCCCChhHHHHHHHHHhccCCCCCCCccchhhhhhhhccCCCchhhhhhh
Q 046723 3 SHPDILQLAQTAARECGGLPLALITIGRAMACKKTPEEWSYAIEVLRTSSSQFPGLGNEVYPLLKFSYDSLPSDTIRSCH 82 (562)
Q Consensus 3 ~~~~l~~i~~~i~~~c~GlPLai~~ig~~L~~~~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~sy~~L~~~~~k~cf 82 (562)
.++++++++++||++|+|+||||+++|+.|++ ++..+|+.++++++..+. .+|+++|++||++|+++..|.||
T Consensus 370 ~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~~~------~~I~~~L~~SYd~L~~~~~k~~F 442 (1153)
T PLN03210 370 PPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNGLD------GKIEKTLRVSYDGLNNKKDKAIF 442 (1153)
T ss_pred CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhCcc------HHHHHHHHHhhhccCccchhhhh
Confidence 34579999999999999999999999999998 689999999999987543 48999999999999864489999
Q ss_pred hhhcccCCCccccHHHHHHHHHHCCCcccCCCchhhHhhHHHHHHHHHhccccccCCCcEEEchhHHHHHHHHhcccc--
Q 046723 83 LYCSLYPEDYCISKEKLIDCWIGERLLTERDRTGEQKEGYHILGILLHACLLEEGGGGEVKMHDVIRDMALWIACDIE-- 160 (562)
Q Consensus 83 l~~a~fp~~~~~~~~~Li~~wiaeg~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~mhdl~~~l~~~~~~~~~-- 160 (562)
+||||||.++.+. .+..|+|++.+.... .++.|++++|++.. .+.++|||++|+||+.+++++.
T Consensus 443 l~ia~ff~~~~~~---~v~~~l~~~~~~~~~----------~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~ 508 (1153)
T PLN03210 443 RHIACLFNGEKVN---DIKLLLANSDLDVNI----------GLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNE 508 (1153)
T ss_pred heehhhcCCCCHH---HHHHHHHhcCCCchh----------ChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCC
Confidence 9999999987543 477788877554321 28899999999886 4679999999999999987753
Q ss_pred cccccEEEeecc----------------------ccc----cCCCccccccceEEeccc---------------------
Q 046723 161 KEKENFFVYAGV----------------------GLV----RAPDVRGWEKARRLSLMQ--------------------- 193 (562)
Q Consensus 161 ~~~~~~~~~~~~----------------------~~~----~~~~~~~~~~l~~L~l~~--------------------- 193 (562)
+.++.+++.... ... ....|.++.+++.|.+..
T Consensus 509 ~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp 588 (1153)
T PLN03210 509 PGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLP 588 (1153)
T ss_pred CCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcC
Confidence 233333322100 000 001244555555555543
Q ss_pred ----------cccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCC-CCcccCcccCCcccCcEEeCCC
Q 046723 194 ----------NQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHC-ELTKLPVGISELVSLQHLDLSE 262 (562)
Q Consensus 194 ----------~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~ 262 (562)
+.++.+|....+.+|+.|++.++.+..++.. +..+++|++|+++++ .+..+|. ++.+++|++|++++
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD 666 (1153)
T ss_pred cccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence 3333333333345555555555555555443 455666666666655 3445542 55566666666666
Q ss_pred C-CccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccc
Q 046723 263 S-DIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKH 341 (562)
Q Consensus 263 ~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 341 (562)
| .+..+|..++++++|+.|++++|..+..+|.. + ++++|++|++.+|..... .+ ....+
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~---------------~p---~~~~n 726 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKS---------------FP---DISTN 726 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccc---------------cc---cccCC
Confidence 5 44566666666666666666666666666653 2 566666666666543210 00 00123
Q ss_pred cceeeEEEecccchHHHHh---------------------------hhhhhccccceeeccccCCCccchhhhhhhcccC
Q 046723 342 LEVISLTLRNSHGLQSFLR---------------------------SWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLN 394 (562)
Q Consensus 342 L~~L~l~~~~~~~~~~l~~---------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 394 (562)
|+.|++..+....++.... ....+++|+.|++++|......+. .++.+++|+
T Consensus 727 L~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~-si~~L~~L~ 805 (1153)
T PLN03210 727 ISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS-SIQNLHKLE 805 (1153)
T ss_pred cCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh-hhhCCCCCC
Confidence 3444443333322221110 001123555566655554444432 255556666
Q ss_pred eeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCCccccccCCCceEEEecCcchhhhhcCCCCCCcccccc
Q 046723 395 RLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMA 474 (562)
Q Consensus 395 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~ 474 (562)
.|++.+|..++.+|... . +++|+.|++++|..+..++.+ .++|++|+|+++ .++.+|.
T Consensus 806 ~L~Ls~C~~L~~LP~~~-~------L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n-~i~~iP~------------ 863 (1153)
T PLN03210 806 HLEIENCINLETLPTGI-N------LESLESLDLSGCSRLRTFPDI--STNISDLNLSRT-GIEEVPW------------ 863 (1153)
T ss_pred EEECCCCCCcCeeCCCC-C------ccccCEEECCCCCcccccccc--ccccCEeECCCC-CCccChH------------
Confidence 66666665555554433 1 556666666666555554432 345666666553 3444433
Q ss_pred CCCCccccceeeccCCcCCcccCcCCCCCCCcceeeeccCCCCccccCC
Q 046723 475 NLNPFEKLQNLEVAGARNLKSIYWKPLPFPHLKAMSFLHCKKLKKLPLD 523 (562)
Q Consensus 475 ~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~ 523 (562)
.+..+++|+.|++.+|++++.++.....+++|+.+.+.+|++|+.++..
T Consensus 864 si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 864 WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWN 912 (1153)
T ss_pred HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCC
Confidence 5677999999999999999999988888999999999999999987754
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=1.2e-21 Score=223.25 Aligned_cols=308 Identities=20% Similarity=0.193 Sum_probs=187.9
Q ss_pred ccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCc-ccCcccCCcccCcEEeC
Q 046723 182 GWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELT-KLPVGISELVSLQHLDL 260 (562)
Q Consensus 182 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l 260 (562)
.+.++++|++++|.+........+++|++|++++|.+....+..++.+++|++|++++|.+. .+|..++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 55677777777776654333345677777777777776444444777777888887777665 56777777777888887
Q ss_pred CCCCcc-ccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCc
Q 046723 261 SESDIE-ELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGL 339 (562)
Q Consensus 261 ~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 339 (562)
++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.+|.... ..+..++++
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~---------------~~p~~l~~l 259 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTG---------------PIPSSLGNL 259 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceecc---------------ccChhHhCC
Confidence 777665 56777777777788877777555566655 6777778888777775432 245567777
Q ss_pred cccceeeEEEecccc-hHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhh
Q 046723 340 KHLEVISLTLRNSHG-LQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQF 418 (562)
Q Consensus 340 ~~L~~L~l~~~~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 418 (562)
++|+.|+++.+...+ .+.... ...+|++|++++|......+ ..+..+++|+.|++.++.-....+..+..
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~----- 330 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIF---SLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVALTS----- 330 (968)
T ss_pred CCCCEEECcCCeeeccCchhHh---hccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCCcCChhHhc-----
Confidence 778877777665432 222222 22377777777765433333 23566777777877776433333333322
Q ss_pred hhccccEEEEecCCCCCCCc-cccccCCCceEEEecCcchhhhhcCCC-CCCc-----------cccccCCCCcccccee
Q 046723 419 AFRSLNMVEICNCIKLKDLT-FLVFAPNLKSIKVGICHAMEEIASEGK-FAEV-----------PEVMANLNPFEKLQNL 485 (562)
Q Consensus 419 ~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~-~~~~-----------~~~~~~~~~~~~L~~L 485 (562)
+++|+.|++++|.....++ .++.+++|+.|++++|.....++..-. ...+ .........+++|+.|
T Consensus 331 -l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L 409 (968)
T PLN00113 331 -LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409 (968)
T ss_pred -CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence 6777888887774332333 466777777777776653322221000 0000 0011123456677777
Q ss_pred eccCCcCCcccCcCCCCCCCcceeeeccCC
Q 046723 486 EVAGARNLKSIYWKPLPFPHLKAMSFLHCK 515 (562)
Q Consensus 486 ~l~~c~~L~~~~~~~~~~~~L~~L~i~~C~ 515 (562)
++++|.--..++.....+++|+.|+++++.
T Consensus 410 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 410 RLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred ECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 777765444455445566777777777654
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=2.1e-21 Score=221.19 Aligned_cols=281 Identities=19% Similarity=0.205 Sum_probs=163.5
Q ss_pred cEEEeeccccccCCCccccccceEEecccccccc-CC-CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCC
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRN-LS-EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCEL 242 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 242 (562)
+.+.+.++.+........+.++++|++++|.+.. ++ .+..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 121 ~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 200 (968)
T PLN00113 121 RYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200 (968)
T ss_pred CEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC
Confidence 3444444444332233456788888888887763 33 467788888888888887655555578888888888888876
Q ss_pred c-ccCcccCCcccCcEEeCCCCCcc-ccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhc-c
Q 046723 243 T-KLPVGISELVSLQHLDLSESDIE-ELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKE-A 319 (562)
Q Consensus 243 ~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~-~ 319 (562)
. .+|..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.+|....... .
T Consensus 201 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~ 279 (968)
T PLN00113 201 VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPS 279 (968)
T ss_pred cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCchh
Confidence 6 56788888888888888888776 67778888888888888887555566655 7788888888888776542100 0
Q ss_pred cc--cc---cccC---CcccchhhhcCccccceeeEEEecccc-hHHHHhhhhhhccccceeeccccCCCccchhhhhhh
Q 046723 320 SE--NS---ILFG---GGELIVEELLGLKHLEVISLTLRNSHG-LQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYL 390 (562)
Q Consensus 320 ~~--~~---~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l 390 (562)
.. .. .... .....+..+.++++|+.|++..+...+ .+... ...++|+.|++++|......+ ..+..+
T Consensus 280 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~L~~n~l~~~~p-~~l~~~ 355 (968)
T PLN00113 280 IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL---TSLPRLQVLQLWSNKFSGEIP-KNLGKH 355 (968)
T ss_pred HhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH---hcCCCCCEEECcCCCCcCcCC-hHHhCC
Confidence 00 00 0000 011233344555556665555544332 11111 122356666666655433332 135556
Q ss_pred cccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCCc-cccccCCCceEEEecCcc
Q 046723 391 KQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLT-FLVFAPNLKSIKVGICHA 456 (562)
Q Consensus 391 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~ 456 (562)
++|+.|+++++.-...++..... +++|+.|++.++.....++ .++.+++|+.|++++|..
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~------~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l 416 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCS------SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhC------cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe
Confidence 66777777665322222222211 3455555555553222222 345566666666666543
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=1e-19 Score=207.72 Aligned_cols=324 Identities=17% Similarity=0.248 Sum_probs=237.6
Q ss_pred ccEEEeeccccccCCCccccccceEEeccccccccCC-CCCCCccccEEEccccC-ccccchhhhcCCCCCcEEEecCC-
Q 046723 164 ENFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLS-EIPTCPHLLTLFLNENN-LRKIHNDFFQFMPSLKVLNLSHC- 240 (562)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~~- 240 (562)
-+.+.+.+......|..-...+++.|++.++.+..++ .+..+++|+.|+++++. +..+|. ++.+++|+.|++++|
T Consensus 591 Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 591 LRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCS 668 (1153)
T ss_pred cEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCC
Confidence 3455555556666666566789999999999998875 46789999999999654 666664 788999999999998
Q ss_pred CCcccCcccCCcccCcEEeCCCC-CccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcc
Q 046723 241 ELTKLPVGISELVSLQHLDLSES-DIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEA 319 (562)
Q Consensus 241 ~~~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 319 (562)
.+..+|..++++++|++|++++| .++.+|..+ ++++|+.|++++|..+..+|.. ..+|+.|++.++.+..++..
T Consensus 669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~lP~~ 743 (1153)
T PLN03210 669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEEFPSN 743 (1153)
T ss_pred CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcccccccc
Confidence 67899999999999999999998 788999766 8999999999999888877752 46788899888875543211
Q ss_pred ccc-c---cccCC--cccc--------hhhhcCccccceeeEEEec-ccchHHHHhhhhhhccccceeeccccCCCccch
Q 046723 320 SEN-S---ILFGG--GELI--------VEELLGLKHLEVISLTLRN-SHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEV 384 (562)
Q Consensus 320 ~~~-~---~~~~~--~~~~--------~~~l~~l~~L~~L~l~~~~-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 384 (562)
... . ..... .... .......++|+.|+++++. ...++.. ...+++|+.|++++|..++..+.
T Consensus 744 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s---i~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 744 LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS---IQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh---hhCCCCCCEEECCCCCCcCeeCC
Confidence 100 0 00000 0000 0001123567777777653 2234333 23345899999999998887763
Q ss_pred hhhhhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCCc-cccccCCCceEEEecCcchhhhhcC
Q 046723 385 SALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLT-FLVFAPNLKSIKVGICHAMEEIASE 463 (562)
Q Consensus 385 ~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~ 463 (562)
...+++|+.|++++|..+..++.. ..+|+.|+|.++ .++.+| ++..+++|+.|++++|+.++.++.
T Consensus 821 --~~~L~sL~~L~Ls~c~~L~~~p~~---------~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~- 887 (1153)
T PLN03210 821 --GINLESLESLDLSGCSRLRTFPDI---------STNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL- 887 (1153)
T ss_pred --CCCccccCEEECCCCCcccccccc---------ccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCc-
Confidence 236889999999999887765431 478999999998 677765 588999999999999999998765
Q ss_pred CCCCCccccccCCCCccccceeeccCCcCCcccCcCC-------------CCCCCcceeeeccCCCCcccc
Q 046723 464 GKFAEVPEVMANLNPFEKLQNLEVAGARNLKSIYWKP-------------LPFPHLKAMSFLHCKKLKKLP 521 (562)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~-------------~~~~~L~~L~i~~C~~L~~lp 521 (562)
....+++|+.+++++|.+|..++... ..+|....+.+.+|.+|..-+
T Consensus 888 -----------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a 947 (1153)
T PLN03210 888 -----------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEA 947 (1153)
T ss_pred -----------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchh
Confidence 45678999999999999998765421 124555667888998887544
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=5.6e-22 Score=195.63 Aligned_cols=311 Identities=23% Similarity=0.264 Sum_probs=132.5
Q ss_pred ccccceEEeccccccccCC-CCCCCccccEEEccccCcc--ccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEE
Q 046723 182 GWEKARRLSLMQNQIRNLS-EIPTCPHLLTLFLNENNLR--KIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHL 258 (562)
Q Consensus 182 ~~~~l~~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L 258 (562)
.+.++.+|++.+|++..+. .++.++.||.+.+..|++. ++|++ +-.+..|.+|||++|++++.|..+..-+++-+|
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 3344444555444444332 2344444444444444433 33443 223444444444444444444444444444444
Q ss_pred eCCCCCccccchh-hhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccc---cc---cc----cC
Q 046723 259 DLSESDIEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASE---NS---IL----FG 327 (562)
Q Consensus 259 ~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~---~~----~~ 327 (562)
+|++|+|..+|.. +.+++.|-.||+++| .+..+|+. +.++..|++|.+++|.......-.. .. .. ..
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence 4444444444433 234444444444443 34444444 4444444444444443321100000 00 00 00
Q ss_pred CcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeecccccccee
Q 046723 328 GGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEEL 407 (562)
Q Consensus 328 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l 407 (562)
+-..++.++..+.+|..++++.+....+++..-... +|+.|+++++... .+.. ..+...+|++|+++.+ .+..+
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~---~LrrLNLS~N~it-eL~~-~~~~W~~lEtLNlSrN-QLt~L 283 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLR---NLRRLNLSGNKIT-ELNM-TEGEWENLETLNLSRN-QLTVL 283 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhh---hhheeccCcCcee-eeec-cHHHHhhhhhhccccc-hhccc
Confidence 011123333333444444444333333332222111 3444444432211 1111 1233334444444433 33333
Q ss_pred eccchhhhhhhhhccccEEEEecCCCCCC--Cc-cccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccce
Q 046723 408 KMDYAEEVQQFAFRSLNMVEICNCIKLKD--LT-FLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQN 484 (562)
Q Consensus 408 ~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~ 484 (562)
|..... ++.|++|.+.++ +++- +| .++.+.+|+++...+ +.++-+|. .+..+++|+.
T Consensus 284 P~avcK------L~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aan-N~LElVPE------------glcRC~kL~k 343 (1255)
T KOG0444|consen 284 PDAVCK------LTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPE------------GLCRCVKLQK 343 (1255)
T ss_pred hHHHhh------hHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhc-cccccCch------------hhhhhHHHHH
Confidence 333322 444444444444 2221 22 244555555554444 22333332 5556667777
Q ss_pred eeccCCcCCcccCcCCCCCCCcceeeeccCCCCccccC
Q 046723 485 LEVAGARNLKSIYWKPLPFPHLKAMSFLHCKKLKKLPL 522 (562)
Q Consensus 485 L~l~~c~~L~~~~~~~~~~~~L~~L~i~~C~~L~~lp~ 522 (562)
|.++. ..|-.+|....-+|-|+.|++.+-|+|.--|-
T Consensus 344 L~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 344 LKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hcccc-cceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 76653 45666666666667777777777777665554
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=7.8e-21 Score=187.62 Aligned_cols=294 Identities=22% Similarity=0.274 Sum_probs=228.4
Q ss_pred CCCccccccceEEeccccccccCC-CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccC
Q 046723 177 APDVRGWEKARRLSLMQNQIRNLS-EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSL 255 (562)
Q Consensus 177 ~~~~~~~~~l~~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L 255 (562)
.+++-.+..+..|++++|++++.| .+...+++-+|+|++|++..+|...|-++..|-+|||++|.+..+|+.+..|.+|
T Consensus 96 P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSML 175 (1255)
T ss_pred CchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhh
Confidence 455677788999999999998876 4677889999999999999999988889999999999999999999999999999
Q ss_pred cEEeCCCCCcccc-chhhhCCCCCcEEeccCcC-CCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccch
Q 046723 256 QHLDLSESDIEEL-PGELKALVNLKCLDLEYTG-NLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIV 333 (562)
Q Consensus 256 ~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~-~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (562)
++|+|++|.+... -..+..+++|++|.++++. .+..+|.+ +..+.+|+.++++.|... ..+
T Consensus 176 qtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp----------------~vP 238 (1255)
T KOG0444|consen 176 QTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLP----------------IVP 238 (1255)
T ss_pred hhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCC----------------cch
Confidence 9999999865421 0123357788888888764 35678877 788999999999988754 368
Q ss_pred hhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeecccc-ccceeeccch
Q 046723 334 EELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSV-ILEELKMDYA 412 (562)
Q Consensus 334 ~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~l~~l~~~~~ 412 (562)
+.+.++++|+.|+++++.++.+..-...+. +|++|+++.+.- +.++. .+..++.|++|.+.++. ..+.+|..+.
T Consensus 239 ecly~l~~LrrLNLS~N~iteL~~~~~~W~---~lEtLNlSrNQL-t~LP~-avcKL~kL~kLy~n~NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKITELNMTEGEWE---NLETLNLSRNQL-TVLPD-AVCKLTKLTKLYANNNKLTFEGIPSGIG 313 (1255)
T ss_pred HHHhhhhhhheeccCcCceeeeeccHHHHh---hhhhhccccchh-ccchH-HHhhhHHHHHHHhccCcccccCCccchh
Confidence 889999999999999999887766555555 999999998554 44432 47888999999887653 2344555544
Q ss_pred hhhhhhhhccccEEEEecCCCCCCCc-cccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCc
Q 046723 413 EEVQQFAFRSLNMVEICNCIKLKDLT-FLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGAR 491 (562)
Q Consensus 413 ~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 491 (562)
. +.+|+.+...++ ++.-+| .+..++.|+.|.|+. +.+-.+|. .++-+|.|+.|++...+
T Consensus 314 K------L~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~-NrLiTLPe------------aIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 314 K------LIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDH-NRLITLPE------------AIHLLPDLKVLDLRENP 373 (1255)
T ss_pred h------hhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccc-cceeechh------------hhhhcCCcceeeccCCc
Confidence 4 778888888887 677655 488899999999965 55555655 67789999999999999
Q ss_pred CCcccCcCCCCCCCcceeeec
Q 046723 492 NLKSIYWKPLPFPHLKAMSFL 512 (562)
Q Consensus 492 ~L~~~~~~~~~~~~L~~L~i~ 512 (562)
+|.--|....+-.+|+.-+|.
T Consensus 374 nLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 374 NLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred CccCCCCcchhhhcceeeecc
Confidence 988766555555566665554
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=2.7e-20 Score=182.59 Aligned_cols=144 Identities=28% Similarity=0.339 Sum_probs=76.5
Q ss_pred ccccccCCCccccc-cceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCccc-C
Q 046723 171 GVGLVRAPDVRGWE-KARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKL-P 246 (562)
Q Consensus 171 ~~~~~~~~~~~~~~-~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~l-p 246 (562)
.+....+|.+.... +++.|++.+|.+..+. ++..++.||+|+|+.|.++.++...|..-.++++|+|++|.|+.+ -
T Consensus 111 ~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~ 190 (873)
T KOG4194|consen 111 KNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLET 190 (873)
T ss_pred cchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccc
Confidence 33444444444333 2556666666555542 244555566666666666555555455555566666666655544 2
Q ss_pred cccCCcccCcEEeCCCCCccccchh-hhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccc
Q 046723 247 VGISELVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKA 315 (562)
Q Consensus 247 ~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~ 315 (562)
..|..+.+|-+|.|+.|.++.+|.- +.++++|+.|++..| .+..+-.-.+.++++|+.|.+..|.+..
T Consensus 191 ~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~k 259 (873)
T KOG4194|consen 191 GHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISK 259 (873)
T ss_pred ccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCccc
Confidence 3455555666666666666666543 333666666666554 3333322224555566666555555443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=1.8e-19 Score=176.82 Aligned_cols=322 Identities=16% Similarity=0.242 Sum_probs=229.4
Q ss_pred ccccccceEEeccccccccCCCCCCC-ccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCc-ccCCcccCcE
Q 046723 180 VRGWEKARRLSLMQNQIRNLSEIPTC-PHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPV-GISELVSLQH 257 (562)
Q Consensus 180 ~~~~~~l~~L~l~~~~~~~l~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~ 257 (562)
+..+.+++.+.+.+|.++.+|.+... .+|+.|+|.+|.++.+..+.++.++.||.|||+.|.|+++|. ++..-.++++
T Consensus 98 f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKK 177 (873)
T ss_pred HhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence 46667889999999999999988665 569999999999999988889999999999999999998864 4666689999
Q ss_pred EeCCCCCccccch-hhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccc------cC---
Q 046723 258 LDLSESDIEELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSIL------FG--- 327 (562)
Q Consensus 258 L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~------~~--- 327 (562)
|+|++|.|+.+-. .+..+.+|..|.++.| .++.+|...++++++|+.|++..|.+....+....+.. ..
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred EeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC
Confidence 9999999997643 4778889999999987 78999998888999999999998876543222111100 00
Q ss_pred CcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeecccccccee
Q 046723 328 GGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEEL 407 (562)
Q Consensus 328 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l 407 (562)
-....-..+..+.++++|++..+....+.. +..-.+..|+.|+++.+. +......+++.++.|+.|+++.+ .+..+
T Consensus 257 I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~--g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N-~i~~l 332 (873)
T KOG4194|consen 257 ISKLDDGAFYGLEKMEHLNLETNRLQAVNE--GWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSN-RITRL 332 (873)
T ss_pred cccccCcceeeecccceeecccchhhhhhc--ccccccchhhhhccchhh-hheeecchhhhcccceeEecccc-ccccC
Confidence 000111123455667777777666554432 111223378888888743 44455556888899999999876 67766
Q ss_pred eccchhhhhhhhhccccEEEEecCCCCCCCc--cccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCcccccee
Q 046723 408 KMDYAEEVQQFAFRSLNMVEICNCIKLKDLT--FLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNL 485 (562)
Q Consensus 408 ~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L 485 (562)
+..... .+..|+.|.|+.+ .+..+. .+..+.+|++|+|++... .-.++ +......++++|++|
T Consensus 333 ~~~sf~-----~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~l-s~~IE--------Daa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 333 DEGSFR-----VLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNEL-SWCIE--------DAAVAFNGLPSLRKL 397 (873)
T ss_pred ChhHHH-----HHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeE-EEEEe--------cchhhhccchhhhhe
Confidence 655443 2788999999888 566653 356789999999987542 11111 111234569999999
Q ss_pred eccCCcCCcccCcC-CCCCCCcceeeeccCCCCccccCC
Q 046723 486 EVAGARNLKSIYWK-PLPFPHLKAMSFLHCKKLKKLPLD 523 (562)
Q Consensus 486 ~l~~c~~L~~~~~~-~~~~~~L~~L~i~~C~~L~~lp~~ 523 (562)
.+.+ .+++.++.. ...+++||+|++.+-+ +.++..+
T Consensus 398 ~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~n 434 (873)
T KOG4194|consen 398 RLTG-NQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPN 434 (873)
T ss_pred eecC-ceeeecchhhhccCcccceecCCCCc-ceeeccc
Confidence 9998 478888753 3468999999998843 4444433
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=4.9e-20 Score=173.21 Aligned_cols=322 Identities=22% Similarity=0.275 Sum_probs=211.0
Q ss_pred CCCccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCc
Q 046723 177 APDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQ 256 (562)
Q Consensus 177 ~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~ 256 (562)
.++.+++.++..|.+..|.+..+|+|..|..|..|.+..|.+..+|.+..+.++++.+||++.|++++.|..++-+.+|.
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLE 278 (565)
T ss_pred ChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhh
Confidence 46688888999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred EEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCC--CCCEEEe--cCCCccchhcccccccccCCcccc
Q 046723 257 HLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLS--RLQVLRM--FGASHKAIKEASENSILFGGGELI 332 (562)
Q Consensus 257 ~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~--~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~ 332 (562)
+||++++.++.+|.++|++ +|+.|.+.|| -+..+-.+++.+-+ -|++|.- .+-.......+.. .........
T Consensus 279 rLDlSNN~is~Lp~sLgnl-hL~~L~leGN-PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e--~~~t~~~~~ 354 (565)
T KOG0472|consen 279 RLDLSNNDISSLPYSLGNL-HLKFLALEGN-PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE--TAMTLPSES 354 (565)
T ss_pred hhcccCCccccCCcccccc-eeeehhhcCC-chHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc--ccCCCCCCc
Confidence 9999999999999999999 9999999998 45555544332211 1222211 1111110000000 000112223
Q ss_pred hhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccch
Q 046723 333 VEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYA 412 (562)
Q Consensus 333 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 412 (562)
......+.+.+.|+++..+.+.++.-........-....+++.+.-.+... .+..+..+.+.-+...+.+..++....
T Consensus 355 ~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk--~L~~lkelvT~l~lsnn~isfv~~~l~ 432 (565)
T KOG0472|consen 355 FPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPK--RLVELKELVTDLVLSNNKISFVPLELS 432 (565)
T ss_pred ccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhh--hhHHHHHHHHHHHhhcCccccchHHHH
Confidence 444556677888888887777666533332222235556666544332222 233333333333333334443333332
Q ss_pred hhhhhhhhccccEEEEecCCCCCCCcc-ccccCCCceEEEecCcchhhhhc-------------C-CCCCCccccccCCC
Q 046723 413 EEVQQFAFRSLNMVEICNCIKLKDLTF-LVFAPNLKSIKVGICHAMEEIAS-------------E-GKFAEVPEVMANLN 477 (562)
Q Consensus 413 ~~~~~~~~~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~l~~-------------~-~~~~~~~~~~~~~~ 477 (562)
.+++|+.|++++. -+.++|. ++++..|+.|+|+.. ....+|. . ...+++ ....+.
T Consensus 433 ------~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~v--d~~~l~ 502 (565)
T KOG0472|consen 433 ------QLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSV--DPSGLK 502 (565)
T ss_pred ------hhhcceeeecccc-hhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhcccccccc--ChHHhh
Confidence 2777777777777 5666554 667777777777754 2222221 0 111111 112467
Q ss_pred CccccceeeccCCcCCcccCcCCCCCCCcceeeeccCC
Q 046723 478 PFEKLQNLEVAGARNLKSIYWKPLPFPHLKAMSFLHCK 515 (562)
Q Consensus 478 ~~~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~C~ 515 (562)
.+.+|..|++.+ ..++.+|...+.|.+|++|.+++-|
T Consensus 503 nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 503 NMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 889999999998 4689999999999999999999865
No 11
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.67 E-value=1e-17 Score=163.57 Aligned_cols=108 Identities=38% Similarity=0.725 Sum_probs=92.2
Q ss_pred ChhHHHHHHHHHHHcCCchhHHHHHHHHhcCCCChhHHHHHHHHHhccCCCCCCCccchhhhhhhhccCCCchhhhhhhh
Q 046723 4 HPDILQLAQTAARECGGLPLALITIGRAMACKKTPEEWSYAIEVLRTSSSQFPGLGNEVYPLLKFSYDSLPSDTIRSCHL 83 (562)
Q Consensus 4 ~~~l~~i~~~i~~~c~GlPLai~~ig~~L~~~~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~sy~~L~~~~~k~cfl 83 (562)
++.+++++++|+++|+|+||||+++|+.|+.+.+..+|+.+++.+........+....+..++.+||+.||++ +|.||+
T Consensus 178 ~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~f~ 256 (287)
T PF00931_consen 178 PEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDE-LRRCFL 256 (287)
T ss_dssp -TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTC-CHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCcc-HHHHHh
Confidence 4567889999999999999999999999976557899999999988876554444578999999999999995 999999
Q ss_pred hhcccCCCccccHHHHHHHHHHCCCcccC
Q 046723 84 YCSLYPEDYCISKEKLIDCWIGERLLTER 112 (562)
Q Consensus 84 ~~a~fp~~~~~~~~~Li~~wiaeg~~~~~ 112 (562)
|||+||+++.|+++.|+++|+||||+...
T Consensus 257 ~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 257 YLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred hCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999999999999999999999999874
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.59 E-value=1.8e-17 Score=156.14 Aligned_cols=261 Identities=24% Similarity=0.358 Sum_probs=204.5
Q ss_pred cceEEeccccccccC-CCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCC
Q 046723 185 KARRLSLMQNQIRNL-SEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSES 263 (562)
Q Consensus 185 ~l~~L~l~~~~~~~l-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~ 263 (562)
.+..+.+..|.++.+ +.+.++..|.+|.+.++.+...|+. ++.+..++.++.+++++..+|..++.+.+|..++.+.+
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~a-ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAA-IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHH-HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 566778888888776 4678888999999999999888887 78888899999999999999999999999999999999
Q ss_pred CccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccc
Q 046723 264 DIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLE 343 (562)
Q Consensus 264 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (562)
.+.++|++++.+..|..++..+| ++..+|.+ ++.+.+|..+.+.++...+ .+...-+++.|+
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~-~~~~~~l~~l~~~~n~l~~----------------l~~~~i~m~~L~ 186 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATNN-QISSLPED-MVNLSKLSKLDLEGNKLKA----------------LPENHIAMKRLK 186 (565)
T ss_pred ceeecCchHHHHhhhhhhhcccc-ccccCchH-HHHHHHHHHhhccccchhh----------------CCHHHHHHHHHH
Confidence 99999999999999999998876 78888887 7788888889988887654 344444588888
Q ss_pred eeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccc
Q 046723 344 VISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSL 423 (562)
Q Consensus 344 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L 423 (562)
+++...+-.+.++.-.+... +|.-|+++.+...... .++.+..|++|+++.+ .++.++..... .+++|
T Consensus 187 ~ld~~~N~L~tlP~~lg~l~---~L~~LyL~~Nki~~lP---ef~gcs~L~Elh~g~N-~i~~lpae~~~-----~L~~l 254 (565)
T KOG0472|consen 187 HLDCNSNLLETLPPELGGLE---SLELLYLRRNKIRFLP---EFPGCSLLKELHVGEN-QIEMLPAEHLK-----HLNSL 254 (565)
T ss_pred hcccchhhhhcCChhhcchh---hhHHHHhhhcccccCC---CCCccHHHHHHHhccc-HHHhhHHHHhc-----ccccc
Confidence 88888777777665554444 7778888775443333 3778888888888665 77777766653 37889
Q ss_pred cEEEEecCCCCCCCcc-ccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCc
Q 046723 424 NMVEICNCIKLKDLTF-LVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGAR 491 (562)
Q Consensus 424 ~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 491 (562)
..|+++.. +++++|. +..+.+|++|++++. .+..+|. .++.+ .|+.|.+.+.|
T Consensus 255 ~vLDLRdN-klke~Pde~clLrsL~rLDlSNN-~is~Lp~------------sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 255 LVLDLRDN-KLKEVPDEICLLRSLERLDLSNN-DISSLPY------------SLGNL-HLKFLALEGNP 308 (565)
T ss_pred eeeecccc-ccccCchHHHHhhhhhhhcccCC-ccccCCc------------ccccc-eeeehhhcCCc
Confidence 99999988 7888664 677888999999874 3555543 67777 88888888865
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=9e-17 Score=134.22 Aligned_cols=166 Identities=23% Similarity=0.383 Sum_probs=142.6
Q ss_pred ccCCCccccccceEEeccccccccC-CCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcc
Q 046723 175 VRAPDVRGWEKARRLSLMQNQIRNL-SEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELV 253 (562)
Q Consensus 175 ~~~~~~~~~~~l~~L~l~~~~~~~l-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~ 253 (562)
...+..-.++++.+|.+++|.++.+ |.+..+.+|++|++.+|+++++|.. ++.++.|+.|+++-|.+..+|.+|+.++
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccccCCCc
Confidence 3445556677888999999998886 4678899999999999999999887 8899999999999999999999999999
Q ss_pred cCcEEeCCCCCcc--ccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCccc
Q 046723 254 SLQHLDLSESDIE--ELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGEL 331 (562)
Q Consensus 254 ~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 331 (562)
-|+.|++.++++. .+|..+..++.|+.|++++| ....+|.. ++++++||.|.+.++...+
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll~---------------- 164 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLLS---------------- 164 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchhh----------------
Confidence 9999999999776 78988888999999999987 67888888 8999999999999888764
Q ss_pred chhhhcCccccceeeEEEecccchHHHH
Q 046723 332 IVEELLGLKHLEVISLTLRNSHGLQSFL 359 (562)
Q Consensus 332 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~ 359 (562)
.+.+++.++.|+.|++.++....++.-.
T Consensus 165 lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred CcHHHHHHHHHHHHhcccceeeecChhh
Confidence 7889999999999999988877665433
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=2.5e-14 Score=152.58 Aligned_cols=254 Identities=20% Similarity=0.215 Sum_probs=157.5
Q ss_pred ccEEEeeccccccCCCccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCc
Q 046723 164 ENFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELT 243 (562)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 243 (562)
...+.+....+..+|..- ..+++.|.+..|.++.+|.. .++|++|++++|.++.+|. ..++|+.|++++|.++
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLT 275 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccC----cccccceeeccCCchh
Confidence 455556666666655422 24677888888887777653 4778888888888777764 2467778888888777
Q ss_pred ccCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccc
Q 046723 244 KLPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENS 323 (562)
Q Consensus 244 ~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 323 (562)
.+|... .+|+.|++++|+++.+|.. +++|+.|++++| .+..+|.. ..+|+.|.+.+|.+..+
T Consensus 276 ~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~~L------- 337 (788)
T PRK15387 276 HLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTSL------- 337 (788)
T ss_pred hhhhch---hhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCccccc-------
Confidence 776532 4677778888877777753 467788888876 56666641 23466677776655421
Q ss_pred cccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccc
Q 046723 324 ILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVI 403 (562)
Q Consensus 324 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 403 (562)
+ .+ ..+|+.|+++++....++.. +.+|+.|+++++.- ...+ . ...+|+.|+++++ .
T Consensus 338 ---------P-~l--p~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N~L-~~LP--~--l~~~L~~LdLs~N-~ 393 (788)
T PRK15387 338 ---------P-TL--PSGLQELSVSDNQLASLPTL------PSELYKLWAYNNRL-TSLP--A--LPSGLKELIVSGN-R 393 (788)
T ss_pred ---------c-cc--ccccceEecCCCccCCCCCC------Ccccceehhhcccc-ccCc--c--cccccceEEecCC-c
Confidence 1 11 13677777777776665532 23666777666432 2222 1 1246777777665 4
Q ss_pred cceeeccchhhhhhhhhccccEEEEecCCCCCCCccccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccc
Q 046723 404 LEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQ 483 (562)
Q Consensus 404 l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~ 483 (562)
+..++.. +++|+.|+++++ .++.+|.+ +.+|+.|+++++. ++.+|. .+..+++|+
T Consensus 394 Lt~LP~l---------~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~Nq-Lt~LP~------------sl~~L~~L~ 448 (788)
T PRK15387 394 LTSLPVL---------PSELKELMVSGN-RLTSLPML--PSGLLSLSVYRNQ-LTRLPE------------SLIHLSSET 448 (788)
T ss_pred ccCCCCc---------ccCCCEEEccCC-cCCCCCcc--hhhhhhhhhccCc-ccccCh------------HHhhccCCC
Confidence 5544321 356777777777 56665543 3467777777643 555543 445677777
Q ss_pred eeeccCCc
Q 046723 484 NLEVAGAR 491 (562)
Q Consensus 484 ~L~l~~c~ 491 (562)
.|++++++
T Consensus 449 ~LdLs~N~ 456 (788)
T PRK15387 449 TVNLEGNP 456 (788)
T ss_pred eEECCCCC
Confidence 77777754
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=5.4e-14 Score=149.99 Aligned_cols=256 Identities=19% Similarity=0.156 Sum_probs=191.4
Q ss_pred cceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCC
Q 046723 185 KARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESD 264 (562)
Q Consensus 185 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~ 264 (562)
+-..|+++.+.++.+|.. -.++|+.|.+.+|.++.+|. ..++|++|++++|+++.+|.. ..+|+.|++.+|.
T Consensus 202 ~~~~LdLs~~~LtsLP~~-l~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDC-LPAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcc-hhcCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 355789999998888752 12589999999999998875 368999999999999999864 4688999999999
Q ss_pred ccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccce
Q 046723 265 IEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEV 344 (562)
Q Consensus 265 l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 344 (562)
+..+|.. +.+|+.|++++| .+..+|.. .++|+.|++++|.+..+ +. -..+|+.
T Consensus 274 L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~~----p~~L~~LdLS~N~L~~L----------------p~---lp~~L~~ 326 (788)
T PRK15387 274 LTHLPAL---PSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASL----------------PA---LPSELCK 326 (788)
T ss_pred hhhhhhc---hhhcCEEECcCC-cccccccc----ccccceeECCCCccccC----------------CC---Ccccccc
Confidence 9988863 367889999998 67888752 57899999999876531 11 1234667
Q ss_pred eeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhcccc
Q 046723 345 ISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLN 424 (562)
Q Consensus 345 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~ 424 (562)
|.+.++....++.+ +.+|+.|+++++.- ...+ . ..++|+.|.+.++ .+..++.. +.+|+
T Consensus 327 L~Ls~N~L~~LP~l------p~~Lq~LdLS~N~L-s~LP--~--lp~~L~~L~Ls~N-~L~~LP~l---------~~~L~ 385 (788)
T PRK15387 327 LWAYNNQLTSLPTL------PSGLQELSVSDNQL-ASLP--T--LPSELYKLWAYNN-RLTSLPAL---------PSGLK 385 (788)
T ss_pred cccccCcccccccc------ccccceEecCCCcc-CCCC--C--CCcccceehhhcc-ccccCccc---------ccccc
Confidence 77887777766542 24899999998654 3333 1 2357888888776 56655421 46799
Q ss_pred EEEEecCCCCCCCccccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCcCCcccCcCCCCCC
Q 046723 425 MVEICNCIKLKDLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKSIYWKPLPFP 504 (562)
Q Consensus 425 ~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~ 504 (562)
.|+++++ .++.+|.. .++|+.|+++++. +..+|. .+.+|+.|+++++ ++..+|.....++
T Consensus 386 ~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~---------------l~~~L~~L~Ls~N-qLt~LP~sl~~L~ 445 (788)
T PRK15387 386 ELIVSGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM---------------LPSGLLSLSVYRN-QLTRLPESLIHLS 445 (788)
T ss_pred eEEecCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc---------------chhhhhhhhhccC-cccccChHHhhcc
Confidence 9999998 67777654 4789999999965 555542 1347888999884 5788887777889
Q ss_pred CcceeeeccCCC
Q 046723 505 HLKAMSFLHCKK 516 (562)
Q Consensus 505 ~L~~L~i~~C~~ 516 (562)
+|+.|++++++-
T Consensus 446 ~L~~LdLs~N~L 457 (788)
T PRK15387 446 SETTVNLEGNPL 457 (788)
T ss_pred CCCeEECCCCCC
Confidence 999999998753
No 16
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.53 E-value=6.6e-15 Score=160.32 Aligned_cols=327 Identities=22% Similarity=0.321 Sum_probs=198.1
Q ss_pred cEEEeeccccccCCCccccccceEEeccccc--cccCCC--CCCCccccEEEcccc-CccccchhhhcCCCCCcEEEecC
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQ--IRNLSE--IPTCPHLLTLFLNEN-NLRKIHNDFFQFMPSLKVLNLSH 239 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~--~~~l~~--~~~~~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~ 239 (562)
+.+..........+.-...+++++|-+..|. +..++. |..++.||+|++++| .+..+|.. ++.+-+||||++++
T Consensus 526 rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSD 604 (889)
T ss_pred eEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccC
Confidence 4455555555555555555689999999886 566665 788999999999955 45667665 89999999999999
Q ss_pred CCCcccCcccCCcccCcEEeCCCCC-ccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhc
Q 046723 240 CELTKLPVGISELVSLQHLDLSESD-IEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKE 318 (562)
Q Consensus 240 ~~~~~lp~~~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 318 (562)
+.++.+|.++++|..|.+|++..+. +..+|.....+++|++|.+.... .......++.+.+|++|....+...+
T Consensus 605 t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s--- 679 (889)
T KOG4658|consen 605 TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISS--- 679 (889)
T ss_pred CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecch---
Confidence 9999999999999999999999984 45566666679999999998653 11112224445555555544433221
Q ss_pred ccccccccCCcccchhhhcCccccceeeEEEe-cccchHHHHhhhhhhccccceeeccccCCCccc--hhh--hh-hhcc
Q 046723 319 ASENSILFGGGELIVEELLGLKHLEVISLTLR-NSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLE--VSA--LA-YLKQ 392 (562)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~--l~-~l~~ 392 (562)
......+..+..|..+..... ...............++|+.|.+.+|...+... ... .. .+++
T Consensus 680 -----------~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~ 748 (889)
T KOG4658|consen 680 -----------VLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPN 748 (889)
T ss_pred -----------hHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHH
Confidence 112233333333332211111 112222223333344478888888887653221 000 11 2556
Q ss_pred cCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCC-ccccccCCCceEEEecCcchhhhhcCCCCCCccc
Q 046723 393 LNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDL-TFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPE 471 (562)
Q Consensus 393 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~ 471 (562)
+.++.+..|...+.+.... ..++|+.|.+..|..+.++ +....+..++.+.+.. ..++........+.++.
T Consensus 749 l~~~~~~~~~~~r~l~~~~-------f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f-~~~~~l~~~~~l~~l~~ 820 (889)
T KOG4658|consen 749 LSKVSILNCHMLRDLTWLL-------FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPF-NKLEGLRMLCSLGGLPQ 820 (889)
T ss_pred HHHHHhhccccccccchhh-------ccCcccEEEEecccccccCCCHHHHhhhcccEEecc-cccccceeeecCCCCce
Confidence 7777777776666544332 2689999999999877774 3344444454432222 11111100000000011
Q ss_pred cccCCCCccccceeeccCCcCCcccCcCCCCCCCcceeeeccC-CCCccccCC
Q 046723 472 VMANLNPFEKLQNLEVAGARNLKSIYWKPLPFPHLKAMSFLHC-KKLKKLPLD 523 (562)
Q Consensus 472 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~C-~~L~~lp~~ 523 (562)
.-..-..+++|+.+.+..||++.. +|.+.++.+.+| +++..+|..
T Consensus 821 i~~~~l~~~~l~~~~ve~~p~l~~-------~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 821 LYWLPLSFLKLEELIVEECPKLGK-------LPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred eEecccCccchhheehhcCccccc-------CccccccceeccccceeecCCc
Confidence 111122344566666666666554 588899999997 999999976
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.51 E-value=3.1e-16 Score=162.38 Aligned_cols=100 Identities=34% Similarity=0.427 Sum_probs=73.9
Q ss_pred cceEEeccccccccCC-CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCC
Q 046723 185 KARRLSLMQNQIRNLS-EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSES 263 (562)
Q Consensus 185 ~l~~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~ 263 (562)
++++|++++|.+..+| .+..+.+|+.|.++.|.+...|.. ...+.+|++|.|.+|.+..+|.++..+++|++|+++.|
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence 4788888888877775 466778888888888888777754 67788888888888888888888888888888888888
Q ss_pred CccccchhhhCCCCCcEEeccC
Q 046723 264 DIEELPGELKALVNLKCLDLEY 285 (562)
Q Consensus 264 ~l~~lp~~~~~l~~L~~L~l~~ 285 (562)
.+...|..+..++.+..+..++
T Consensus 125 ~f~~~Pl~i~~lt~~~~~~~s~ 146 (1081)
T KOG0618|consen 125 HFGPIPLVIEVLTAEEELAASN 146 (1081)
T ss_pred ccCCCchhHHhhhHHHHHhhhc
Confidence 7777775554444444444443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=7.3e-14 Score=149.90 Aligned_cols=219 Identities=18% Similarity=0.260 Sum_probs=108.9
Q ss_pred ceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCc
Q 046723 186 ARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDI 265 (562)
Q Consensus 186 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l 265 (562)
...|.+.++.++.+|.. -.++|+.|++++|.++.+|...+ .+|++|++++|+++.+|..+. .+|+.|++++|.+
T Consensus 180 ~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 180 KTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred ceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence 44555665555555531 12456666666666666655422 456666666666666665443 3566666666666
Q ss_pred cccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCcccccee
Q 046723 266 EELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVI 345 (562)
Q Consensus 266 ~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 345 (562)
..+|..+. .+|+.|++++| .+..+|.. + .++|+.|++++|.+..+ +..+. .+|+.|
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l--~~sL~~L~Ls~N~Lt~L----------------P~~lp--~sL~~L 309 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHN-KISCLPEN-L--PEELRYLSVYDNSIRTL----------------PAHLP--SGITHL 309 (754)
T ss_pred CcCChhHh--CCCCEEECcCC-ccCccccc-c--CCCCcEEECCCCccccC----------------cccch--hhHHHH
Confidence 66665543 35666666654 45555543 2 13566666666654421 11111 234445
Q ss_pred eEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccccE
Q 046723 346 SLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNM 425 (562)
Q Consensus 346 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~ 425 (562)
+++.+....++.. ...+|+.|.+++|... ..+. .-.++|+.|+++++ .+..+|... +++|+.
T Consensus 310 ~Ls~N~Lt~LP~~-----l~~sL~~L~Ls~N~Lt-~LP~---~l~~sL~~L~Ls~N-~L~~LP~~l--------p~~L~~ 371 (754)
T PRK15370 310 NVQSNSLTALPET-----LPPGLKTLEAGENALT-SLPA---SLPPELQVLDVSKN-QITVLPETL--------PPTITT 371 (754)
T ss_pred HhcCCccccCCcc-----ccccceeccccCCccc-cCCh---hhcCcccEEECCCC-CCCcCChhh--------cCCcCE
Confidence 5555444433321 1125555655554322 2220 11245666666555 344333211 345666
Q ss_pred EEEecCCCCCCCccccccCCCceEEEecC
Q 046723 426 VEICNCIKLKDLTFLVFAPNLKSIKVGIC 454 (562)
Q Consensus 426 L~L~~c~~l~~l~~l~~l~~L~~L~L~~c 454 (562)
|+|++| .++.+|.- ..++|+.|+++++
T Consensus 372 LdLs~N-~Lt~LP~~-l~~sL~~LdLs~N 398 (754)
T PRK15370 372 LDVSRN-ALTNLPEN-LPAALQIMQASRN 398 (754)
T ss_pred EECCCC-cCCCCCHh-HHHHHHHHhhccC
Confidence 666665 44444321 1134556666553
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.49 E-value=3.6e-15 Score=154.62 Aligned_cols=266 Identities=23% Similarity=0.329 Sum_probs=163.3
Q ss_pred cceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCC
Q 046723 185 KARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESD 264 (562)
Q Consensus 185 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~ 264 (562)
+++.|....|.+..+..-..-.+|++++++.+.+..+| +.++.+.+|+.++..+|.++.+|..+...++|++|.+..|.
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE 298 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh
Confidence 45555555555554333344466777777777777776 44677777777777777777777777777777777777777
Q ss_pred ccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCC-CCEEEecCCCccchhcccccccccCCcccchhhhcCccccc
Q 046723 265 IEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSR-LQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLE 343 (562)
Q Consensus 265 l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (562)
++.+|+....++.|++|++..| ++..+|+..+..+.. |+.|+.+.+...... -.+=..+..|+
T Consensus 299 l~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp---------------~~~e~~~~~Lq 362 (1081)
T KOG0618|consen 299 LEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLP---------------SYEENNHAALQ 362 (1081)
T ss_pred hhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccc---------------cccchhhHHHH
Confidence 7777777667777777777766 666666654444433 555555544433211 00011223444
Q ss_pred eeeEEEecccc--hHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhc
Q 046723 344 VISLTLRNSHG--LQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFR 421 (562)
Q Consensus 344 ~L~l~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 421 (562)
.|.+.++..++ ++.+.. . .+|+.|+++++ .++..+...+.+++.|+.|.++|+ .++.++..... +.
T Consensus 363 ~LylanN~Ltd~c~p~l~~-~---~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~------~~ 430 (1081)
T KOG0618|consen 363 ELYLANNHLTDSCFPVLVN-F---KHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVAN------LG 430 (1081)
T ss_pred HHHHhcCcccccchhhhcc-c---cceeeeeeccc-ccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHh------hh
Confidence 55555444322 222111 1 16677777663 334444455777888888888887 77777766554 77
Q ss_pred cccEEEEecCCCCCCCccccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCcC
Q 046723 422 SLNMVEICNCIKLKDLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARN 492 (562)
Q Consensus 422 ~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 492 (562)
.|++|...++ .+..+|.+..++.|+.++++ |+.++.+.- .....-|+|++|++++...
T Consensus 431 ~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l-----------~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 431 RLHTLRAHSN-QLLSFPELAQLPQLKVLDLS-CNNLSEVTL-----------PEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhHHHhhcCC-ceeechhhhhcCcceEEecc-cchhhhhhh-----------hhhCCCcccceeeccCCcc
Confidence 7888877666 67777788888888888885 455665522 0111227888888888665
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.47 E-value=1e-13 Score=148.87 Aligned_cols=241 Identities=22% Similarity=0.237 Sum_probs=162.4
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcc
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTK 244 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 244 (562)
..+...+.++...|.. -..+++.|++.+|.++.+|.. ...+|++|++++|.++.+|... ..+|+.|++++|++..
T Consensus 181 ~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~~ 255 (754)
T PRK15370 181 TELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATL---PDTIQEMELSINRITE 255 (754)
T ss_pred eEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhh---hccccEEECcCCccCc
Confidence 3444455555555542 135788888888888887653 2358888888888888887653 2478888888888888
Q ss_pred cCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhccccccc
Q 046723 245 LPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSI 324 (562)
Q Consensus 245 lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 324 (562)
+|..+. .+|++|++++|++..+|..+. .+|+.|++++| .+..+|.. + .++|+.|++++|.+..+
T Consensus 256 LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~L-------- 319 (754)
T PRK15370 256 LPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-L--PSGITHLNVQSNSLTAL-------- 319 (754)
T ss_pred CChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-c--hhhHHHHHhcCCccccC--------
Confidence 887764 478888988888888887653 57888888887 67777754 2 24678888888766531
Q ss_pred ccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeecccccc
Q 046723 325 LFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVIL 404 (562)
Q Consensus 325 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 404 (562)
+..+ .++|+.|++..+....++... +++|+.|++++|.. ...+. ...++|+.|++.+| .+
T Consensus 320 --------P~~l--~~sL~~L~Ls~N~Lt~LP~~l-----~~sL~~L~Ls~N~L-~~LP~---~lp~~L~~LdLs~N-~L 379 (754)
T PRK15370 320 --------PETL--PPGLKTLEAGENALTSLPASL-----PPELQVLDVSKNQI-TVLPE---TLPPTITTLDVSRN-AL 379 (754)
T ss_pred --------Cccc--cccceeccccCCccccCChhh-----cCcccEEECCCCCC-CcCCh---hhcCCcCEEECCCC-cC
Confidence 1111 256777788777766655322 24888888888653 33331 12368888888887 56
Q ss_pred ceeeccchhhhhhhhhccccEEEEecCCCCCCCcc-----ccccCCCceEEEecCc
Q 046723 405 EELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLTF-----LVFAPNLKSIKVGICH 455 (562)
Q Consensus 405 ~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-----l~~l~~L~~L~L~~c~ 455 (562)
..+|... ..+|+.|+++++ ++..+|. ...+|++..|.+.+.+
T Consensus 380 t~LP~~l--------~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 380 TNLPENL--------PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCCCHhH--------HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 6555432 346888888887 5666542 2345778888887755
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=2.2e-15 Score=126.04 Aligned_cols=160 Identities=23% Similarity=0.338 Sum_probs=131.5
Q ss_pred ccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCccccchhhhC
Q 046723 195 QIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELPGELKA 274 (562)
Q Consensus 195 ~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~ 274 (562)
++..++.+..+.+.+.|.++.|.++.+|+. +..+.+|++|++.+|+++++|.+++.+++|+.|++..+++..+|.++|.
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred cHhhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 345567778889999999999999999988 7899999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEeccCcCCC-CccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEeccc
Q 046723 275 LVNLKCLDLEYTGNL-ITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSH 353 (562)
Q Consensus 275 l~~L~~L~l~~~~~l-~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 353 (562)
++.|+.||+.+|..- ..+|.. +..+..|+-|++.++.+. ..+..++++++|+.|.+..+...
T Consensus 101 ~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe----------------~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFE----------------ILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred CchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCcc----------------cCChhhhhhcceeEEeeccCchh
Confidence 999999999987432 346665 667889999999988754 47888999999999988877666
Q ss_pred chHHHHhhhhhhccccceeecc
Q 046723 354 GLQSFLRSWKLRRCTRALLLQC 375 (562)
Q Consensus 354 ~~~~l~~~~~~~~~L~~L~l~~ 375 (562)
.++.-.+... .|++|.+.+
T Consensus 164 ~lpkeig~lt---~lrelhiqg 182 (264)
T KOG0617|consen 164 SLPKEIGDLT---RLRELHIQG 182 (264)
T ss_pred hCcHHHHHHH---HHHHHhccc
Confidence 5554333222 445555544
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.26 E-value=4.2e-13 Score=126.80 Aligned_cols=127 Identities=29% Similarity=0.348 Sum_probs=74.0
Q ss_pred cceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecC-CCCcccCcc-cCCcccCcEEeC
Q 046723 185 KARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSH-CELTKLPVG-ISELVSLQHLDL 260 (562)
Q Consensus 185 ~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~-~~~~~lp~~-~~~l~~L~~L~l 260 (562)
....|.+..|.++.+| .|..+++||.|+|+.|.++.+.++.|..++.|-.|-+-+ |+|+.+|+. |++|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 4455666666666664 356666666666666666666666666666655554444 466666543 455666666666
Q ss_pred CCCCccccc-hhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCC
Q 046723 261 SESDIEELP-GELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGAS 312 (562)
Q Consensus 261 ~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~ 312 (562)
..+++.-++ ..+..+++|..|.+.+| .+..++...+..+.+++++.+..+.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 666555333 24556666666666655 4555555445556666666555443
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.26 E-value=3.2e-12 Score=126.92 Aligned_cols=62 Identities=34% Similarity=0.335 Sum_probs=27.1
Q ss_pred CccccEEEccccCcccc----chhhhcCCCCCcEEEecCCCCcc-------cCcccCCcccCcEEeCCCCCcc
Q 046723 205 CPHLLTLFLNENNLRKI----HNDFFQFMPSLKVLNLSHCELTK-------LPVGISELVSLQHLDLSESDIE 266 (562)
Q Consensus 205 ~~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~-------lp~~~~~l~~L~~L~l~~~~l~ 266 (562)
+.+|+.|+++++.++.. ....+...++++.|+++++.+.. ++..+.++.+|+.|++++|.+.
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 34455555555554221 11123344455555555543331 1223334445555555555443
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.21 E-value=1e-11 Score=123.39 Aligned_cols=215 Identities=20% Similarity=0.155 Sum_probs=93.0
Q ss_pred hcCCCCCcEEEecCCCCc-----ccCcccCCcccCcEEeCCCCCccc-------cchhhhCCCCCcEEeccCcCCCCccc
Q 046723 226 FQFMPSLKVLNLSHCELT-----KLPVGISELVSLQHLDLSESDIEE-------LPGELKALVNLKCLDLEYTGNLITIP 293 (562)
Q Consensus 226 ~~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~l~~-------lp~~~~~l~~L~~L~l~~~~~l~~~p 293 (562)
+..+.+|++|+++++.++ .++..+...++|++++++++.+.. ++..+..+++|+.|++++|......+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 445555666666666552 234444555556666665554331 22334455566666666553222222
Q ss_pred hhhhcCCCC---CCEEEecCCCccchhcccccccccCCcccchhhhcCc-cccceeeEEEecccc--hHHHHhhhhhhcc
Q 046723 294 RQLISNLSR---LQVLRMFGASHKAIKEASENSILFGGGELIVEELLGL-KHLEVISLTLRNSHG--LQSFLRSWKLRRC 367 (562)
Q Consensus 294 ~~~~~~l~~---L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~--~~~l~~~~~~~~~ 367 (562)
.. +..+.+ |++|++++|..... ........+..+ ++|+.|+++.+.... ...+.......++
T Consensus 99 ~~-~~~l~~~~~L~~L~ls~~~~~~~-----------~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 166 (319)
T cd00116 99 GV-LESLLRSSSLQELKLNNNGLGDR-----------GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRD 166 (319)
T ss_pred HH-HHHHhccCcccEEEeeCCccchH-----------HHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCC
Confidence 21 222332 66666665544310 001122334444 556666666555442 1222222222235
Q ss_pred ccceeeccccCCCccc---hhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCC--ccc-c
Q 046723 368 TRALLLQCFNDSTLLE---VSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDL--TFL-V 441 (562)
Q Consensus 368 L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l--~~l-~ 441 (562)
|++|++++|.-..... ...+..+++|+.|++++| .+......... .....+++|++|++++| .+++. ..+ .
T Consensus 167 L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~-~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~ 243 (319)
T cd00116 167 LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALA-ETLASLKSLEVLNLGDN-NLTDAGAAALAS 243 (319)
T ss_pred cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHH-HHhcccCCCCEEecCCC-cCchHHHHHHHH
Confidence 6666665543221100 011233346666666655 32211111000 00012455666666665 34331 111 1
Q ss_pred ----ccCCCceEEEecCc
Q 046723 442 ----FAPNLKSIKVGICH 455 (562)
Q Consensus 442 ----~l~~L~~L~L~~c~ 455 (562)
..+.|++|++++|.
T Consensus 244 ~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 244 ALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHhccCCCceEEEccCCC
Confidence 13566666666653
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.17 E-value=6.8e-12 Score=118.77 Aligned_cols=257 Identities=16% Similarity=0.176 Sum_probs=136.2
Q ss_pred ccEEEeeccccccCCC--ccccccceEEeccccccccCC--CCCCCccccEEEccc-cCccccchhhhcCCCCCcEEEec
Q 046723 164 ENFFVYAGVGLVRAPD--VRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNE-NNLRKIHNDFFQFMPSLKVLNLS 238 (562)
Q Consensus 164 ~~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l~ 238 (562)
..-+.++.+.+..+|+ |+.++++|+|++++|.++.+. +|..++.|..|.+.+ |.+++++...|+++..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 3445555555555544 666777777777777777762 466666666666554 77777777777777777777777
Q ss_pred CCCCccc-CcccCCcccCcEEeCCCCCccccch-hhhCCCCCcEEeccCcCCCC------------ccchhhhcCCCCCC
Q 046723 239 HCELTKL-PVGISELVSLQHLDLSESDIEELPG-ELKALVNLKCLDLEYTGNLI------------TIPRQLISNLSRLQ 304 (562)
Q Consensus 239 ~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~------------~~p~~~~~~l~~L~ 304 (562)
.+.+..+ ...+..+++|..|.+..+.+..++. .+..+.+++++.+..+..+. ..|.. ++......
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-tsgarc~~ 227 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TSGARCVS 227 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh-cccceecc
Confidence 7776655 3456667777777777777777666 46666777777666553111 11111 11111111
Q ss_pred EEEecCCCccchhcccc-----------cccccCCcccchhhhcCccccceeeEEEecccchHH-HHhhhhhhcccccee
Q 046723 305 VLRMFGASHKAIKEASE-----------NSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQS-FLRSWKLRRCTRALL 372 (562)
Q Consensus 305 ~L~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-l~~~~~~~~~L~~L~ 372 (562)
-..+....+........ ..-.+.....-...++.|++|++|+++++.++.+.. .+... ..+++|.
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~---a~l~eL~ 304 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA---AELQELY 304 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch---hhhhhhh
Confidence 11111111100000000 000001122223346667777777777776665543 12222 2566666
Q ss_pred eccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecC
Q 046723 373 LQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNC 431 (562)
Q Consensus 373 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c 431 (562)
+..+. +..+.-..+..+.+|+.|+++++ .++.+...... ...+|.+|.+-.+
T Consensus 305 L~~N~-l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~-----~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 305 LTRNK-LEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQ-----TLFSLSTLNLLSN 356 (498)
T ss_pred cCcch-HHHHHHHhhhccccceeeeecCC-eeEEEeccccc-----ccceeeeeehccC
Confidence 65533 22222223556667777777666 45444433322 1455666666543
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.07 E-value=1.2e-11 Score=118.10 Aligned_cols=290 Identities=16% Similarity=0.150 Sum_probs=131.1
Q ss_pred ccccEEEccccCcccc--chhhhcCCCCCcEEEecCC-CCcc--cCcccCCcccCcEEeCCCC-Cccc--cchhhhCCCC
Q 046723 206 PHLLTLFLNENNLRKI--HNDFFQFMPSLKVLNLSHC-ELTK--LPVGISELVSLQHLDLSES-DIEE--LPGELKALVN 277 (562)
Q Consensus 206 ~~L~~L~l~~~~l~~~--~~~~~~~l~~L~~L~l~~~-~~~~--lp~~~~~l~~L~~L~l~~~-~l~~--lp~~~~~l~~ 277 (562)
..|+.|.+.++.-... ...+-..+++++.|.+.+| +++. +-.--..+.+|++|++..| .++. +-.....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3456666665432211 1122455666666666666 4431 1111133556666666664 3432 2122334566
Q ss_pred CcEEeccCcCCCCccc-hhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEecccchH
Q 046723 278 LKCLDLEYTGNLITIP-RQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQ 356 (562)
Q Consensus 278 L~~L~l~~~~~l~~~p-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 356 (562)
|++++++.|..+..-. ..+..++..++.+...||...+ .+.+...=....-+-++++.......-.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~-------------le~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE-------------LEALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc-------------HHHHHHHhccChHhhccchhhhccccch
Confidence 6666666665444311 1113344555555555554322 0001111111111222222111111111
Q ss_pred HHHhhhhhhccccceeeccccCCCccchhhh-hhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCC
Q 046723 357 SFLRSWKLRRCTRALLLQCFNDSTLLEVSAL-AYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLK 435 (562)
Q Consensus 357 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~ 435 (562)
.+......+..|+.|..++|.......+..+ ...++|+.|.+.+|..+.+....... ...++|+.+++.+|....
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~----rn~~~Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG----RNCPHLERLDLEECGLIT 360 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh----cCChhhhhhcccccceeh
Confidence 2222223334566666666666555554444 24466666666666555544433222 235566666666664333
Q ss_pred CC--cc-ccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCcCCcccCc-CCCCCCCcceeee
Q 046723 436 DL--TF-LVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKSIYW-KPLPFPHLKAMSF 511 (562)
Q Consensus 436 ~l--~~-l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~-~~~~~~~L~~L~i 511 (562)
+- .. -...|.|++|.++.|..+++--- ............|+.+.+++|+.+.+-.. ....+++|+.+++
T Consensus 361 d~tL~sls~~C~~lr~lslshce~itD~gi-------~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 361 DGTLASLSRNCPRLRVLSLSHCELITDEGI-------RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred hhhHhhhccCCchhccCChhhhhhhhhhhh-------hhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 32 11 23556666666666665544300 00111223455666666666666544222 1223456666666
Q ss_pred ccCCCCcc
Q 046723 512 LHCKKLKK 519 (562)
Q Consensus 512 ~~C~~L~~ 519 (562)
.+|.....
T Consensus 434 ~~~q~vtk 441 (483)
T KOG4341|consen 434 IDCQDVTK 441 (483)
T ss_pred echhhhhh
Confidence 66655444
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=1.7e-10 Score=101.30 Aligned_cols=126 Identities=31% Similarity=0.375 Sum_probs=36.8
Q ss_pred ccccceEEeccccccccCCCCC-CCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCccc-CCcccCcEEe
Q 046723 182 GWEKARRLSLMQNQIRNLSEIP-TCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGI-SELVSLQHLD 259 (562)
Q Consensus 182 ~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~~l~~L~~L~ 259 (562)
...+++.|++.++.++.+..+. .+.+|++|++++|.++.+.. +..+++|++|++++|.++.++..+ ..+++|++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3345566666666666665554 35666666666666665543 555666666666666666654433 2456666666
Q ss_pred CCCCCccccc--hhhhCCCCCcEEeccCcCCCCccc---hhhhcCCCCCCEEEecC
Q 046723 260 LSESDIEELP--GELKALVNLKCLDLEYTGNLITIP---RQLISNLSRLQVLRMFG 310 (562)
Q Consensus 260 l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~~p---~~~~~~l~~L~~L~l~~ 310 (562)
+++|++..+- ..+..+++|+.|++.+|+. ...+ ..++..+|+|+.|+-..
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEE
Confidence 6666555332 2345566666666666532 2222 22345566666665543
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=7.6e-10 Score=97.16 Aligned_cols=124 Identities=27% Similarity=0.326 Sum_probs=58.7
Q ss_pred cccEEEeeccccccCCCcc-ccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCC
Q 046723 163 KENFFVYAGVGLVRAPDVR-GWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCE 241 (562)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~-~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 241 (562)
+.+.+...+..+..+.... .+.+++.|++++|.++.++.+..+++|++|++++|.++.+.......+++|+.|++++|+
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK 99 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS-
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc
Confidence 3456677777777776666 467999999999999999999999999999999999999876544579999999999998
Q ss_pred CcccC--cccCCcccCcEEeCCCCCccccch----hhhCCCCCcEEeccCc
Q 046723 242 LTKLP--VGISELVSLQHLDLSESDIEELPG----ELKALVNLKCLDLEYT 286 (562)
Q Consensus 242 ~~~lp--~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~~ 286 (562)
+..+- ..+..+++|++|++.+|.+...+. .+..+++|+.||-...
T Consensus 100 I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 100 ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp --SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 87652 456789999999999998886553 4788999999997543
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.80 E-value=2e-10 Score=113.87 Aligned_cols=175 Identities=26% Similarity=0.318 Sum_probs=124.0
Q ss_pred cccccceEEeccccccccCC-CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEe
Q 046723 181 RGWEKARRLSLMQNQIRNLS-EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLD 259 (562)
Q Consensus 181 ~~~~~l~~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 259 (562)
..+..+..+.+..|.+..++ .+.++..|.+|+++.|++..+|.. +..+ -|++|-+++|+++.+|..++.+..|..|+
T Consensus 95 ~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 95 CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLD 172 (722)
T ss_pred HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-hhcC-cceeEEEecCccccCCcccccchhHHHhh
Confidence 33445566666666666654 356777777888888887777766 3333 37788888888888888888777888888
Q ss_pred CCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCc
Q 046723 260 LSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGL 339 (562)
Q Consensus 260 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 339 (562)
.+.|.+..+|..++++.+|+.|.+..| .+..+|.+ +..| .|..|++++|.+.. ++-.+.+|
T Consensus 173 ~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~~L-pLi~lDfScNkis~----------------iPv~fr~m 233 (722)
T KOG0532|consen 173 VSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LCSL-PLIRLDFSCNKISY----------------LPVDFRKM 233 (722)
T ss_pred hhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-HhCC-ceeeeecccCceee----------------cchhhhhh
Confidence 888888888888888888888888776 66777776 4444 37778888777653 56677888
Q ss_pred cccceeeEEEecccchHHHHhhhhhhccccceeeccc
Q 046723 340 KHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCF 376 (562)
Q Consensus 340 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 376 (562)
++|++|-+.++...+-++-.......+-.++|+..-|
T Consensus 234 ~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 234 RHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 8888888888877776665544444444567777666
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.79 E-value=3.3e-10 Score=108.42 Aligned_cols=262 Identities=18% Similarity=0.196 Sum_probs=143.8
Q ss_pred CCcEEEecCC-CCc--ccCcccCCcccCcEEeCCCC-Ccc--ccchhhhCCCCCcEEeccCcCCCCccchh-hhcCCCCC
Q 046723 231 SLKVLNLSHC-ELT--KLPVGISELVSLQHLDLSES-DIE--ELPGELKALVNLKCLDLEYTGNLITIPRQ-LISNLSRL 303 (562)
Q Consensus 231 ~L~~L~l~~~-~~~--~lp~~~~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~p~~-~~~~l~~L 303 (562)
.|+.|.++|+ .+. .+-....+.++++.|.+.+| +++ .+-..-.+..+|+++++..|..++...-. +...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 4566666666 222 23233355667777777766 343 12222345667777777776655544322 34457777
Q ss_pred CEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccc
Q 046723 304 QVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLE 383 (562)
Q Consensus 304 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 383 (562)
.++++++|.... +...-.-...++.++.+...+......+.+........-+.++++..|..+++.+
T Consensus 219 ~~lNlSwc~qi~-------------~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~ 285 (483)
T KOG4341|consen 219 KYLNLSWCPQIS-------------GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED 285 (483)
T ss_pred HHhhhccCchhh-------------cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH
Confidence 777777775442 1112222334444555544554445555555544433345566666666666655
Q ss_pred hhhh-hhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCC--ccc-cccCCCceEEEecCcchhh
Q 046723 384 VSAL-AYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDL--TFL-VFAPNLKSIKVGICHAMEE 459 (562)
Q Consensus 384 ~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l--~~l-~~l~~L~~L~L~~c~~l~~ 459 (562)
+..+ ..+..|+.|..++|..+.+...+... ...++|+.|.+.+|..+++. ..+ ...+.|+.+++.+|..+.+
T Consensus 286 ~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg----~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 286 LWLIACGCHALQVLCYSSCTDITDEVLWALG----QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD 361 (483)
T ss_pred HHHHhhhhhHhhhhcccCCCCCchHHHHHHh----cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh
Confidence 3222 23566677777777665544433322 23567777777777666662 223 3567777777777665444
Q ss_pred hhcCCCCCCccccccCCCCccccceeeccCCcCCccc-----CcCCCCCCCcceeeeccCCCCcc
Q 046723 460 IASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKSI-----YWKPLPFPHLKAMSFLHCKKLKK 519 (562)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~-----~~~~~~~~~L~~L~i~~C~~L~~ 519 (562)
- ....--...|+|+.|.+++|..+.+- .....++..|+.+++++||..+.
T Consensus 362 ~----------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 362 G----------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred h----------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence 2 11112345677777777777666554 22233556677777777776554
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.1e-09 Score=105.45 Aligned_cols=202 Identities=19% Similarity=0.133 Sum_probs=129.5
Q ss_pred ccccceEEeccccccccCC---CCCCCccccEEEccccCccccc--hhhhcCCCCCcEEEecCCCCcccCcc--cCCccc
Q 046723 182 GWEKARRLSLMQNQIRNLS---EIPTCPHLLTLFLNENNLRKIH--NDFFQFMPSLKVLNLSHCELTKLPVG--ISELVS 254 (562)
Q Consensus 182 ~~~~l~~L~l~~~~~~~l~---~~~~~~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~l~~~~~~~lp~~--~~~l~~ 254 (562)
.+++++.+.+.+..+.... ....|++++.|+|+.|-+.... ..+...+++|+.|+++.|.+.....+ -..+.+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4467888888888777665 3577899999999988776543 34467899999999999866533221 235788
Q ss_pred CcEEeCCCCCcc--ccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccc
Q 046723 255 LQHLDLSESDIE--ELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELI 332 (562)
Q Consensus 255 L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 332 (562)
|+.|.++.|+++ ++-.....+++|+.|++.+|..+..-... ..-+..|+.|++++|.... ...
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~--------------~~~ 263 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLID--------------FDQ 263 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccc--------------ccc
Confidence 999999999887 34444567789999999888422211111 3456778899999887763 223
Q ss_pred hhhhcCccccceeeEEEecccchHHHHh----hhhhhccccceeeccccCCCccchhhhhhhcccCeeee
Q 046723 333 VEELLGLKHLEVISLTLRNSHGLQSFLR----SWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQI 398 (562)
Q Consensus 333 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~----~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 398 (562)
....+.++.|+.|+++.++..++..... .....++|++|.+..++..+-..+..+..+++|+.|.+
T Consensus 264 ~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 264 GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 4456777888888777766555432211 11122356666666555433333334455555555554
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.5e-09 Score=104.47 Aligned_cols=206 Identities=18% Similarity=0.194 Sum_probs=102.8
Q ss_pred CCCccccEEEccccCccccch-hhhcCCCCCcEEEecCCCCc---ccCcccCCcccCcEEeCCCCCccccchh--hhCCC
Q 046723 203 PTCPHLLTLFLNENNLRKIHN-DFFQFMPSLKVLNLSHCELT---KLPVGISELVSLQHLDLSESDIEELPGE--LKALV 276 (562)
Q Consensus 203 ~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~---~lp~~~~~l~~L~~L~l~~~~l~~lp~~--~~~l~ 276 (562)
++++.||...|.++.+...+. +....|++++.|||++|-+. .+-.-...|++|+.|+++.|.+.....+ -..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 466677777777666654442 33566777777777776433 2233345667777777777655533221 22455
Q ss_pred CCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEecccchH
Q 046723 277 NLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQ 356 (562)
Q Consensus 277 ~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 356 (562)
.|+.|.++.|.....-.......+|+|..|++..|.... .....-.-+.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~---------------~~~~~~~i~~---------------- 246 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL---------------IKATSTKILQ---------------- 246 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc---------------eecchhhhhh----------------
Confidence 666666666632221111223445666666665553110 0001111122
Q ss_pred HHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccch-hhhhhhhhccccEEEEecCCCCC
Q 046723 357 SFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYA-EEVQQFAFRSLNMVEICNCIKLK 435 (562)
Q Consensus 357 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~~~L~~L~L~~c~~l~ 435 (562)
.|++|+|++++..........+.++.|..|.+..+ ++.++..-.. ..--...|++|++|.+..+ ++.
T Consensus 247 ----------~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~ 314 (505)
T KOG3207|consen 247 ----------TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISEN-NIR 314 (505)
T ss_pred ----------HHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccC-ccc
Confidence 45555555555554444444556666666666655 3333221110 0000123677777777766 343
Q ss_pred CCc---cccccCCCceEEE
Q 046723 436 DLT---FLVFAPNLKSIKV 451 (562)
Q Consensus 436 ~l~---~l~~l~~L~~L~L 451 (562)
+++ .+..+++|+.|.+
T Consensus 315 ~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 315 DWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred cccccchhhccchhhhhhc
Confidence 333 3444555555553
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.74 E-value=1.1e-09 Score=108.71 Aligned_cols=127 Identities=28% Similarity=0.433 Sum_probs=63.8
Q ss_pred ccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCC
Q 046723 184 EKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSES 263 (562)
Q Consensus 184 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~ 263 (562)
..+..++++.|++..+|.--..--|++|.+++|.++.+|.+ ++...+|..||.+.|.+..+|..++.+..|+.|+++.+
T Consensus 121 ~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 121 EALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN 199 (722)
T ss_pred hHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh
Confidence 34444555555555444322233355555555555555544 44555555555555555555555555555555555555
Q ss_pred CccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCcc
Q 046723 264 DIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHK 314 (562)
Q Consensus 264 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 314 (562)
.+..+|+.+..| .|..||++.| ++..+|.. +.+|+.|++|.+.+|...
T Consensus 200 ~l~~lp~El~~L-pLi~lDfScN-kis~iPv~-fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 200 HLEDLPEELCSL-PLIRLDFSCN-KISYLPVD-FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhCCHHHhCC-ceeeeecccC-ceeecchh-hhhhhhheeeeeccCCCC
Confidence 555555555433 2455555533 45555544 455555555555555443
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=1.1e-08 Score=104.80 Aligned_cols=120 Identities=34% Similarity=0.481 Sum_probs=66.9
Q ss_pred Eecccccc-ccCCCCCCCccccEEEccccCccccchhhhcCCC-CCcEEEecCCCCcccCcccCCcccCcEEeCCCCCcc
Q 046723 189 LSLMQNQI-RNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMP-SLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIE 266 (562)
Q Consensus 189 L~l~~~~~-~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~-~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~ 266 (562)
+....+.+ .........+.+..|++.++.++++++. ...+. +|+.|+++++++..+|..+..+++|+.|+++.|.+.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 44444443 2233333445566666666666666553 33332 566666666666666555666666666666666666
Q ss_pred ccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCC
Q 046723 267 ELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGA 311 (562)
Q Consensus 267 ~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~ 311 (562)
++|...+.+++|+.|+++++ .+..+|.. +.....|+++.+.++
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGN-KISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred hhhhhhhhhhhhhheeccCC-ccccCchh-hhhhhhhhhhhhcCC
Confidence 66655556666666666665 55555553 334444666666555
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=2.5e-09 Score=97.93 Aligned_cols=145 Identities=15% Similarity=0.094 Sum_probs=76.5
Q ss_pred chhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhh-hhhhcccCeeeeccccccceeecc
Q 046723 332 IVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSA-LAYLKQLNRLQIANSVILEELKMD 410 (562)
Q Consensus 332 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~l~~~ 410 (562)
+...+.+-.+|+.|+++...+-.-.++.-....+..|.+|+++||...+..--.. -+--++|+.|+++||...- ...
T Consensus 226 I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl--~~s 303 (419)
T KOG2120|consen 226 IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL--QKS 303 (419)
T ss_pred HHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh--hhh
Confidence 4444555555555555554433322222233334467777777776544331111 1223577777777764311 111
Q ss_pred chhhhhhhhhccccEEEEecCCCCCC--CccccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeecc
Q 046723 411 YAEEVQQFAFRSLNMVEICNCIKLKD--LTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVA 488 (562)
Q Consensus 411 ~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 488 (562)
.-......+|+|..|+|++|..+++ +..+-+++.|++|.++.|+.+. + +....+...|.|.+|++.
T Consensus 304 -h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~---p--------~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 304 -HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII---P--------ETLLELNSKPSLVYLDVF 371 (419)
T ss_pred -HHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC---h--------HHeeeeccCcceEEEEec
Confidence 1011123467777777777766666 3335577777777777777532 1 223345666777777776
Q ss_pred CC
Q 046723 489 GA 490 (562)
Q Consensus 489 ~c 490 (562)
+|
T Consensus 372 g~ 373 (419)
T KOG2120|consen 372 GC 373 (419)
T ss_pred cc
Confidence 65
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.65 E-value=4e-09 Score=96.73 Aligned_cols=133 Identities=27% Similarity=0.273 Sum_probs=93.3
Q ss_pred ccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccC
Q 046723 206 PHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEY 285 (562)
Q Consensus 206 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 285 (562)
..|+.+++++|.++.+..+ .+-+|.+|+|+++.|.+..+.. +..+++|+.|+|++|.++++-..-.++.|.+.|.+.+
T Consensus 284 q~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDES-VKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhhccccccchhhhhhh-hhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 4577778888877777655 6777888888888887776633 6777788888888887776665556677777888877
Q ss_pred cCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEecccchHH
Q 046723 286 TGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQS 357 (562)
Q Consensus 286 ~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 357 (562)
| .+..+.. ++++-+|..|++.+|.+.. .....++++++.|+.+.+.++....+.+
T Consensus 362 N-~iE~LSG--L~KLYSLvnLDl~~N~Ie~--------------ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 362 N-KIETLSG--LRKLYSLVNLDLSSNQIEE--------------LDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred h-hHhhhhh--hHhhhhheeccccccchhh--------------HHHhcccccccHHHHHhhcCCCccccch
Confidence 6 4444432 6677777778887776652 3345677777777777777776665543
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.63 E-value=1.1e-08 Score=94.00 Aligned_cols=133 Identities=20% Similarity=0.192 Sum_probs=95.4
Q ss_pred hhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchh
Q 046723 334 EELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAE 413 (562)
Q Consensus 334 ~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 413 (562)
.....-+.|..++++++.+..+.+ +.++.+.++.|.++.+...... .+..+++|+.|+++++ .+..+.-+-..
T Consensus 278 ~~~dTWq~LtelDLS~N~I~~iDE---SvKL~Pkir~L~lS~N~i~~v~---nLa~L~~L~~LDLS~N-~Ls~~~Gwh~K 350 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLITQIDE---SVKLAPKLRRLILSQNRIRTVQ---NLAELPQLQLLDLSGN-LLAECVGWHLK 350 (490)
T ss_pred EecchHhhhhhccccccchhhhhh---hhhhccceeEEeccccceeeeh---hhhhcccceEeecccc-hhHhhhhhHhh
Confidence 334444567777777776665553 3344447888888775544333 3778899999999887 45544332222
Q ss_pred hhhhhhhccccEEEEecCCCCCCCccccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCc
Q 046723 414 EVQQFAFRSLNMVEICNCIKLKDLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGAR 491 (562)
Q Consensus 414 ~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 491 (562)
+-|.++|.++++ .+.+++.++.+-+|..|++++. +++.+- ....++.+|+|+.+.+.+.|
T Consensus 351 ------LGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N-~Ie~ld----------eV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 351 ------LGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSN-QIEELD----------EVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ------hcCEeeeehhhh-hHhhhhhhHhhhhheecccccc-chhhHH----------HhcccccccHHHHHhhcCCC
Confidence 789999999999 7888999999999999999984 466652 23467889999999999876
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.61 E-value=1.6e-08 Score=94.99 Aligned_cols=162 Identities=17% Similarity=0.153 Sum_probs=93.0
Q ss_pred ccccccceEEecccccccc-----C-CCCCCCccccEEEcccc----Cccccchh------hhcCCCCCcEEEecCCCCc
Q 046723 180 VRGWEKARRLSLMQNQIRN-----L-SEIPTCPHLLTLFLNEN----NLRKIHND------FFQFMPSLKVLNLSHCELT 243 (562)
Q Consensus 180 ~~~~~~l~~L~l~~~~~~~-----l-~~~~~~~~L~~L~l~~~----~l~~~~~~------~~~~l~~L~~L~l~~~~~~ 243 (562)
...+..+..+++++|.+.. + +.+.+.++|+..++++- ....+|+. .+..+++|++||||.|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3445678888888887643 1 22455567888887733 22233322 1446678888888888553
Q ss_pred -cc----CcccCCcccCcEEeCCCCCccccc--------------hhhhCCCCCcEEeccCcCCCCccch----hhhcCC
Q 046723 244 -KL----PVGISELVSLQHLDLSESDIEELP--------------GELKALVNLKCLDLEYTGNLITIPR----QLISNL 300 (562)
Q Consensus 244 -~l----p~~~~~l~~L~~L~l~~~~l~~lp--------------~~~~~l~~L~~L~l~~~~~l~~~p~----~~~~~l 300 (562)
.- -.-+..+..|+.|.|.+|.+...- .-+++-++|+++....| .+..-+. ..+...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSH 184 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhc
Confidence 22 223455778888888888765221 12345566777776665 3333332 224455
Q ss_pred CCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEeccc
Q 046723 301 SRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSH 353 (562)
Q Consensus 301 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 353 (562)
+.|+.+.+..|.+.. .+.......+..+++|++|++..+..+
T Consensus 185 ~~leevr~~qN~I~~-----------eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRP-----------EGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred cccceEEEecccccC-----------chhHHHHHHHHhCCcceeeecccchhh
Confidence 666777766665442 111234556666677777776665544
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.60 E-value=3.3e-08 Score=101.15 Aligned_cols=176 Identities=28% Similarity=0.375 Sum_probs=135.6
Q ss_pred ccccccceEEeccccccccCCCCCCCc--cccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcE
Q 046723 180 VRGWEKARRLSLMQNQIRNLSEIPTCP--HLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQH 257 (562)
Q Consensus 180 ~~~~~~l~~L~l~~~~~~~l~~~~~~~--~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 257 (562)
......+..|.+.++.+..++...... +|+.|+++++.+..++.. +..+++|+.|++++|++..+|...+.+.+|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 344467899999999999998765554 899999999999988633 78999999999999999999988878999999
Q ss_pred EeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhc
Q 046723 258 LDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELL 337 (562)
Q Consensus 258 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (562)
|+++++++..+|..+..+..|+++.++++. ....+.. +.++.++..+.+.++.... .+..++
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~~----------------~~~~~~ 252 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLED----------------LPESIG 252 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceeee----------------ccchhc
Confidence 999999999999888788889999999874 3444444 7788888888877665442 255667
Q ss_pred CccccceeeEEEecccchHHHHhhhhhhccccceeeccccC
Q 046723 338 GLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFND 378 (562)
Q Consensus 338 ~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 378 (562)
.+..++.|+++.+....+.. ... ..+++.|++++...
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~-~~~---~~~l~~L~~s~n~~ 289 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS-LGS---LTNLRELDLSGNSL 289 (394)
T ss_pred cccccceecccccccccccc-ccc---cCccCEEeccCccc
Confidence 77778888887777666654 111 12566666655433
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=7.1e-09 Score=95.06 Aligned_cols=181 Identities=23% Similarity=0.253 Sum_probs=101.4
Q ss_pred CCcEEEecCCCCc--ccCcccCCcccCcEEeCCCCCcc-ccchhhhCCCCCcEEeccCcCCCCccchh-hhcCCCCCCEE
Q 046723 231 SLKVLNLSHCELT--KLPVGISELVSLQHLDLSESDIE-ELPGELKALVNLKCLDLEYTGNLITIPRQ-LISNLSRLQVL 306 (562)
Q Consensus 231 ~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~p~~-~~~~l~~L~~L 306 (562)
.|++|||++..++ .+-.-++.+.+|+.|.+.+..+. .+-..+.+-.+|+.|+++.|+.++..... ++.+++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4777777777665 33334556667777777777665 34445666667777777777666554432 24566777777
Q ss_pred EecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCC-Cccchh
Q 046723 307 RMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDS-TLLEVS 385 (562)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~ 385 (562)
++++|...... -.....+++ + .|+.|++++|... ....++
T Consensus 266 NlsWc~l~~~~-----------Vtv~V~his--e--------------------------~l~~LNlsG~rrnl~~sh~~ 306 (419)
T KOG2120|consen 266 NLSWCFLFTEK-----------VTVAVAHIS--E--------------------------TLTQLNLSGYRRNLQKSHLS 306 (419)
T ss_pred CchHhhccchh-----------hhHHHhhhc--h--------------------------hhhhhhhhhhHhhhhhhHHH
Confidence 77766543200 000111111 2 4555555555422 111222
Q ss_pred hh-hhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCC--CccccccCCCceEEEecCc
Q 046723 386 AL-AYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKD--LTFLVFAPNLKSIKVGICH 455 (562)
Q Consensus 386 ~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~ 455 (562)
.+ ..+++|..|++++|..++.-..... ..|+.|++|.++.|..+.- +-.+...|+|.+|++.+|-
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~~~~~~-----~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKNDCFQEF-----FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHHhCCceeeeccccccccCchHHHHH-----HhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 22 4567777788777766553111111 2377788888888854432 2335677888888887764
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.53 E-value=8.5e-08 Score=69.03 Aligned_cols=58 Identities=40% Similarity=0.575 Sum_probs=33.7
Q ss_pred cccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccC-cccCCcccCcEEeCCCCC
Q 046723 207 HLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP-VGISELVSLQHLDLSESD 264 (562)
Q Consensus 207 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~ 264 (562)
+|++|++++|.++.+++..|..+++|++|++++|.++.++ ..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555666666666665555566666666666666555553 345556666666665554
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.38 E-value=9.9e-07 Score=94.83 Aligned_cols=107 Identities=22% Similarity=0.293 Sum_probs=81.8
Q ss_pred cccEEEccccCccccchhhhcCCCCCcEEEecCCCCc-ccCcccCCcccCcEEeCCCCCcc-ccchhhhCCCCCcEEecc
Q 046723 207 HLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELT-KLPVGISELVSLQHLDLSESDIE-ELPGELKALVNLKCLDLE 284 (562)
Q Consensus 207 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~ 284 (562)
.++.|+|+++.+....+..+..+++|+.|+|++|.+. .+|..++.+++|++|++++|.+. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888888887555555888888888888888887 67888888888888888888887 678888888888888888
Q ss_pred CcCCCCccchhhhcCCCCCCEEEecCCCc
Q 046723 285 YTGNLITIPRQLISNLSRLQVLRMFGASH 313 (562)
Q Consensus 285 ~~~~l~~~p~~~~~~l~~L~~L~l~~~~~ 313 (562)
+|.....+|..+-....++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 88666677776322234667777776653
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=1.3e-06 Score=62.72 Aligned_cols=59 Identities=34% Similarity=0.515 Sum_probs=54.1
Q ss_pred ccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCC
Q 046723 184 EKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCEL 242 (562)
Q Consensus 184 ~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 242 (562)
++++.|++.+|.++.++ .+..+++|++|++++|.++.+++..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 36889999999999986 478999999999999999999999999999999999999864
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.20 E-value=6.9e-07 Score=84.21 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=22.9
Q ss_pred CCCCccccEEEccccCccc----cchhhhcCCCCCcEEEecCC
Q 046723 202 IPTCPHLLTLFLNENNLRK----IHNDFFQFMPSLKVLNLSHC 240 (562)
Q Consensus 202 ~~~~~~L~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~~ 240 (562)
...+..+..+++++|.+.. .....+.+.++|+..++++-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ 68 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM 68 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh
Confidence 4456667777777776642 12233556667777776654
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.18 E-value=2e-07 Score=95.69 Aligned_cols=122 Identities=36% Similarity=0.505 Sum_probs=56.5
Q ss_pred eEEecccccccc-CCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCc
Q 046723 187 RRLSLMQNQIRN-LSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDI 265 (562)
Q Consensus 187 ~~L~l~~~~~~~-l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l 265 (562)
+.+.+..|.+.. ...+..+.+|..|++.+|.+..+... +..+++|++|++++|.|+.+ .++..+..|+.|++.+|.+
T Consensus 75 ~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 75 KELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLI 152 (414)
T ss_pred Hhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccc-cchhhccchhhheeccCcc
Confidence 333344444443 22244455555555555555544332 34455555555555555544 2344444555555555555
Q ss_pred cccchhhhCCCCCcEEeccCcCCCCccch-hhhcCCCCCCEEEecCCCc
Q 046723 266 EELPGELKALVNLKCLDLEYTGNLITIPR-QLISNLSRLQVLRMFGASH 313 (562)
Q Consensus 266 ~~lp~~~~~l~~L~~L~l~~~~~l~~~p~-~~~~~l~~L~~L~l~~~~~ 313 (562)
+.+. .+..+++|+.+++++| .+..+.. . ...+.+++.+.+.++..
T Consensus 153 ~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 153 SDIS-GLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred hhcc-CCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCch
Confidence 5443 2333555555555554 2333332 1 13445555555554443
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.18 E-value=1.9e-07 Score=95.81 Aligned_cols=213 Identities=24% Similarity=0.241 Sum_probs=133.6
Q ss_pred CCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEEec
Q 046723 204 TCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDL 283 (562)
Q Consensus 204 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l 283 (562)
.+..+..+.+..+.+..+... +..+++|.+|++.++++..+...+..+++|++|++++|.|+.+. ++..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcc-cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence 455666666777777663332 67889999999999999888665888999999999999999886 6778888999999
Q ss_pred cCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhh--hcCccccceeeEEEecccchHHHHhh
Q 046723 284 EYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEE--LLGLKHLEVISLTLRNSHGLQSFLRS 361 (562)
Q Consensus 284 ~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~l~~~ 361 (562)
.+| .+..+.. +..+++|+.+++.+|.... ... +..+..++.+.+..+....+..+...
T Consensus 148 ~~N-~i~~~~~--~~~l~~L~~l~l~~n~i~~-----------------ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~ 207 (414)
T KOG0531|consen 148 SGN-LISDISG--LESLKSLKLLDLSYNRIVD-----------------IENDELSELISLEELDLGGNSIREIEGLDLL 207 (414)
T ss_pred ccC-cchhccC--CccchhhhcccCCcchhhh-----------------hhhhhhhhccchHHHhccCCchhcccchHHH
Confidence 998 6777665 6668899999999887663 223 46677777777777666555443322
Q ss_pred hhhhccccceeeccccCCCccchhhhhhhc--ccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCCcc
Q 046723 362 WKLRRCTRALLLQCFNDSTLLEVSALAYLK--QLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLTF 439 (562)
Q Consensus 362 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~ 439 (562)
. .+..+.+..+......+ +..+. +|+.+.+.+. .+...+.... .+.++..|++.+. .+.....
T Consensus 208 ~----~l~~~~l~~n~i~~~~~---l~~~~~~~L~~l~l~~n-~i~~~~~~~~------~~~~l~~l~~~~n-~~~~~~~ 272 (414)
T KOG0531|consen 208 K----KLVLLSLLDNKISKLEG---LNELVMLHLRELYLSGN-RISRSPEGLE------NLKNLPVLDLSSN-RISNLEG 272 (414)
T ss_pred H----HHHHhhcccccceeccC---cccchhHHHHHHhcccC-cccccccccc------ccccccccchhhc-ccccccc
Confidence 2 22222333222111111 22222 2666666655 3333221111 1556666666655 4444444
Q ss_pred ccccCCCceEEEec
Q 046723 440 LVFAPNLKSIKVGI 453 (562)
Q Consensus 440 l~~l~~L~~L~L~~ 453 (562)
+...+.+..+...+
T Consensus 273 ~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 273 LERLPKLSELWLND 286 (414)
T ss_pred ccccchHHHhccCc
Confidence 44444444444443
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.18 E-value=4e-06 Score=90.20 Aligned_cols=109 Identities=24% Similarity=0.378 Sum_probs=90.7
Q ss_pred cceEEecccccccc-C-CCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCc-ccCcccCCcccCcEEeCC
Q 046723 185 KARRLSLMQNQIRN-L-SEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELT-KLPVGISELVSLQHLDLS 261 (562)
Q Consensus 185 ~l~~L~l~~~~~~~-l-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~ 261 (562)
.+..|++.++.+.. + +.+..+++|+.|+|++|.+....+..++.+++|++|++++|+++ .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47788999988864 3 35788999999999999998555555899999999999999988 689999999999999999
Q ss_pred CCCcc-ccchhhhCC-CCCcEEeccCcCCCCccc
Q 046723 262 ESDIE-ELPGELKAL-VNLKCLDLEYTGNLITIP 293 (562)
Q Consensus 262 ~~~l~-~lp~~~~~l-~~L~~L~l~~~~~l~~~p 293 (562)
+|.+. .+|..++.+ .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99887 889887764 567889998886555444
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.09 E-value=1.2e-07 Score=97.03 Aligned_cols=175 Identities=19% Similarity=0.244 Sum_probs=92.4
Q ss_pred CCCccccccceEEeccccccccCCCCCCC-ccccEEEcc-------------ccCccccchhhhcCCCCCcEEEecCCCC
Q 046723 177 APDVRGWEKARRLSLMQNQIRNLSEIPTC-PHLLTLFLN-------------ENNLRKIHNDFFQFMPSLKVLNLSHCEL 242 (562)
Q Consensus 177 ~~~~~~~~~l~~L~l~~~~~~~l~~~~~~-~~L~~L~l~-------------~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 242 (562)
.-++..++.+|+|-+.++.+....++..+ ..|+.|.-. +..+.+.+ ....|.+.+.++|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~-----~Wn~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP-----VWNKLATASFSYNRL 176 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch-----hhhhHhhhhcchhhH
Confidence 34456678888888888876554333221 122222211 00111111 112344555555555
Q ss_pred cccCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhccccc
Q 046723 243 TKLPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASEN 322 (562)
Q Consensus 243 ~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 322 (562)
..+-.++.-++.|+.|+|+.|+++..- .+..+++|++||+++| .+..+|.-....+. |+.|.+.+|...
T Consensus 177 ~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l~-------- 245 (1096)
T KOG1859|consen 177 VLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNALT-------- 245 (1096)
T ss_pred HhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecccHHH--------
Confidence 555555555666666666666666544 5566666666666665 55555542122233 666666666443
Q ss_pred ccccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeecccc
Q 046723 323 SILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFN 377 (562)
Q Consensus 323 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 377 (562)
.+..+.+|++|+.|+++.+-..+...+...+.+. .|+.|++.+++
T Consensus 246 ---------tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs-~L~~L~LeGNP 290 (1096)
T KOG1859|consen 246 ---------TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLS-SLIVLWLEGNP 290 (1096)
T ss_pred ---------hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHH-HHHHHhhcCCc
Confidence 2455556666666666666555555554444433 56666666544
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=4.6e-06 Score=54.94 Aligned_cols=39 Identities=36% Similarity=0.603 Sum_probs=19.4
Q ss_pred CCcEEEecCCCCcccCcccCCcccCcEEeCCCCCccccc
Q 046723 231 SLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELP 269 (562)
Q Consensus 231 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp 269 (562)
+|++|++++|+++.+|..+++|++|++|++++|.+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455555555555555544555555555555555555443
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=2.5e-06 Score=78.70 Aligned_cols=104 Identities=24% Similarity=0.222 Sum_probs=53.7
Q ss_pred EEEccccCccccch--hhhcCCCCCcEEEecCCCCccc---CcccCCcccCcEEeCCCCCccccchhh-hCCCCCcEEec
Q 046723 210 TLFLNENNLRKIHN--DFFQFMPSLKVLNLSHCELTKL---PVGISELVSLQHLDLSESDIEELPGEL-KALVNLKCLDL 283 (562)
Q Consensus 210 ~L~l~~~~l~~~~~--~~~~~l~~L~~L~l~~~~~~~l---p~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L~l 283 (562)
.|.+.++.+..... .+-..+.+++.|||.+|.++.. ...+.++++|++|+++.|.+...-... -.+.+|+.|.+
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 44455555543321 1123456667777777766533 233456667777777766544211111 23456677776
Q ss_pred cCcCCCCccchhhhcCCCCCCEEEecCCCc
Q 046723 284 EYTGNLITIPRQLISNLSRLQVLRMFGASH 313 (562)
Q Consensus 284 ~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~ 313 (562)
.|+..-..-....+..+|.++.|+++.|..
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 665322222223355666677777766643
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.91 E-value=3.6e-06 Score=90.36 Aligned_cols=105 Identities=22% Similarity=0.283 Sum_probs=52.8
Q ss_pred ccccEEEccccCcc--ccchhhhcCCCCCcEEEecCCCCc--ccCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEE
Q 046723 206 PHLLTLFLNENNLR--KIHNDFFQFMPSLKVLNLSHCELT--KLPVGISELVSLQHLDLSESDIEELPGELKALVNLKCL 281 (562)
Q Consensus 206 ~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 281 (562)
.+|+.|++++...- ..+...-.-+|+|+.|.+++-.+. .+-.-..++++|..||+++++++.+ .+++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 45666666644321 222232334666666666665332 2222334556666666666666655 466666666666
Q ss_pred eccCcCCCCccc-hhhhcCCCCCCEEEecCCC
Q 046723 282 DLEYTGNLITIP-RQLISNLSRLQVLRMFGAS 312 (562)
Q Consensus 282 ~l~~~~~l~~~p-~~~~~~l~~L~~L~l~~~~ 312 (562)
.+.+-. +.... -.-+.+|++|+.|+++...
T Consensus 201 ~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 201 SMRNLE-FESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred hccCCC-CCchhhHHHHhcccCCCeeeccccc
Confidence 665432 22111 1114456666666665543
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.89 E-value=8e-06 Score=87.75 Aligned_cols=130 Identities=22% Similarity=0.289 Sum_probs=95.0
Q ss_pred ccceEEeccccccccC---CC-CCCCccccEEEccccCccccc-hhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEE
Q 046723 184 EKARRLSLMQNQIRNL---SE-IPTCPHLLTLFLNENNLRKIH-NDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHL 258 (562)
Q Consensus 184 ~~l~~L~l~~~~~~~l---~~-~~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L 258 (562)
.++++|++.+...-.- .. ...+|.|++|.+.+-.+..-. .....++++|+.||+++++++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 4788888877432211 11 246799999999987765332 23467899999999999999988 889999999999
Q ss_pred eCCCCCccccc--hhhhCCCCCcEEeccCcCCCCcc--chhh---hcCCCCCCEEEecCCCcc
Q 046723 259 DLSESDIEELP--GELKALVNLKCLDLEYTGNLITI--PRQL---ISNLSRLQVLRMFGASHK 314 (562)
Q Consensus 259 ~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~~--p~~~---~~~l~~L~~L~l~~~~~~ 314 (562)
.+.+-.+..-. ..+.+|++|++||++........ .... -..||+||.|+.+++...
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 99998776422 36789999999999986443332 1111 245899999999987654
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=9.5e-05 Score=73.35 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=72.2
Q ss_pred hcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhh
Q 046723 336 LLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEV 415 (562)
Q Consensus 336 l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 415 (562)
+..+.+++.|+++.+....++ .++.+|++|.+++|..++..+- .+ .++|++|.+.+|..+..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP------~LP~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~Cs~L~sL-------- 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP------VLPNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHCPEISGL-------- 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC------CCCCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCccccccc--------
Confidence 444566667776665544444 2333677777776666555441 11 246677777666544322
Q ss_pred hhhhhccccEEEEecCCCCCCCccccccCCCceEEEecCcchhhhhcCCCCCCccccccCC-CCc-cccceeeccCCcCC
Q 046723 416 QQFAFRSLNMVEICNCIKLKDLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANL-NPF-EKLQNLEVAGARNL 493 (562)
Q Consensus 416 ~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~-~~~-~~L~~L~l~~c~~L 493 (562)
+++|+.|++.+. .+..+..+ .++|+.|.+.++...... .. ..+ ++|+.|.+.+|..+
T Consensus 111 ----P~sLe~L~L~~n-~~~~L~~L--PssLk~L~I~~~n~~~~~--------------~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 111 ----PESVRSLEIKGS-ATDSIKNV--PNGLTSLSINSYNPENQA--------------RIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred ----ccccceEEeCCC-CCcccccC--cchHhheecccccccccc--------------ccccccCCcccEEEecCCCcc
Confidence 345666666432 32222211 345666666432211000 00 123 47888999888765
Q ss_pred cccCcCCCCCCCcceeeeccC
Q 046723 494 KSIYWKPLPFPHLKAMSFLHC 514 (562)
Q Consensus 494 ~~~~~~~~~~~~L~~L~i~~C 514 (562)
. ++.. --.+|+.|.+..+
T Consensus 170 ~-LP~~--LP~SLk~L~ls~n 187 (426)
T PRK15386 170 I-LPEK--LPESLQSITLHIE 187 (426)
T ss_pred c-Cccc--ccccCcEEEeccc
Confidence 3 2211 1157888888764
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=3.8e-05 Score=50.57 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=32.4
Q ss_pred ccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccC
Q 046723 206 PHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246 (562)
Q Consensus 206 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp 246 (562)
++|++|++++|.++++++. ++++++|++|++++|+++.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCCc
Confidence 4788999999999988775 789999999999999888764
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=8.9e-05 Score=73.56 Aligned_cols=73 Identities=19% Similarity=0.402 Sum_probs=53.5
Q ss_pred hcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCC-CccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCC
Q 046723 226 FQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSES-DIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQ 304 (562)
Q Consensus 226 ~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~ 304 (562)
+..+++++.|++++|.++.+|. + ..+|+.|.+++| .++.+|..+ ..+|++|++++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-------ccc
Confidence 4557889999999998888883 3 346888999887 667777655 36888899988876666664 356
Q ss_pred EEEecC
Q 046723 305 VLRMFG 310 (562)
Q Consensus 305 ~L~l~~ 310 (562)
.|++.+
T Consensus 116 ~L~L~~ 121 (426)
T PRK15386 116 SLEIKG 121 (426)
T ss_pred eEEeCC
Confidence 666654
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.67 E-value=7.1e-05 Score=65.52 Aligned_cols=101 Identities=30% Similarity=0.472 Sum_probs=68.9
Q ss_pred cceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccC--cccCCcccCcEEeCCC
Q 046723 185 KARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP--VGISELVSLQHLDLSE 262 (562)
Q Consensus 185 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~ 262 (562)
....++++.|.+..++.+..++.|.+|.+++|.++.+.+..-..+++|..|.+.+|.+.++. ..+..++.|++|.+-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 45567777777777777778888888888888888777776666777888888887776552 3345566777777777
Q ss_pred CCccccch----hhhCCCCCcEEeccC
Q 046723 263 SDIEELPG----ELKALVNLKCLDLEY 285 (562)
Q Consensus 263 ~~l~~lp~----~~~~l~~L~~L~l~~ 285 (562)
+.+++-.. .+..+++|+.||+.+
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhh
Confidence 76654332 245566666666654
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=2e-05 Score=72.91 Aligned_cols=99 Identities=21% Similarity=0.249 Sum_probs=68.7
Q ss_pred EEeccccccccCCCC----CCCccccEEEccccCccccc--hhhhcCCCCCcEEEecCCCCcccCccc-CCcccCcEEeC
Q 046723 188 RLSLMQNQIRNLSEI----PTCPHLLTLFLNENNLRKIH--NDFFQFMPSLKVLNLSHCELTKLPVGI-SELVSLQHLDL 260 (562)
Q Consensus 188 ~L~l~~~~~~~l~~~----~~~~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~l~~~~~~~lp~~~-~~l~~L~~L~l 260 (562)
.+.+.++.+.....+ ..+..++.++|.+|.+++.. ..++.++|+|++|+++.|++..--... ..+.+|++|-|
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 444445544443222 45678888999999887543 344678999999999998765322222 35778999999
Q ss_pred CCCCcc--ccchhhhCCCCCcEEeccCc
Q 046723 261 SESDIE--ELPGELKALVNLKCLDLEYT 286 (562)
Q Consensus 261 ~~~~l~--~lp~~~~~l~~L~~L~l~~~ 286 (562)
.++.+. .....+..++.++.|.++.|
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 998664 55556778888888888876
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.66 E-value=7e-06 Score=67.05 Aligned_cols=109 Identities=21% Similarity=0.323 Sum_probs=78.9
Q ss_pred ceEEeccccccccCC----CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCC
Q 046723 186 ARRLSLMQNQIRNLS----EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLS 261 (562)
Q Consensus 186 l~~L~l~~~~~~~l~----~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 261 (562)
+..++++.+.+..++ .+....+|...++++|.+.+.|+.+...++.+..|++.+|.+..+|..+..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 334455555444332 2355567777788888888888886667778888888888888888888888888888888
Q ss_pred CCCccccchhhhCCCCCcEEeccCcCCCCccchh
Q 046723 262 ESDIEELPGELKALVNLKCLDLEYTGNLITIPRQ 295 (562)
Q Consensus 262 ~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~ 295 (562)
.|.+...|..+..+.++-.|+..++ ....+|-.
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 8888888887777888888887766 45556544
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.63 E-value=1.4e-06 Score=89.59 Aligned_cols=129 Identities=28% Similarity=0.321 Sum_probs=98.9
Q ss_pred ccccceEEeccccccccCC-CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeC
Q 046723 182 GWEKARRLSLMQNQIRNLS-EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDL 260 (562)
Q Consensus 182 ~~~~l~~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l 260 (562)
.|.++...++++|.+..+. ++.-++.|+.|+|+.|.+++.. ++..+++|+.|||+.|.+..+|.-=..-.+|+.|++
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeee
Confidence 4567888888888887764 4566788999999999998875 488899999999999988877652222235999999
Q ss_pred CCCCccccchhhhCCCCCcEEeccCcCCCCccc-hhhhcCCCCCCEEEecCCCcc
Q 046723 261 SESDIEELPGELKALVNLKCLDLEYTGNLITIP-RQLISNLSRLQVLRMFGASHK 314 (562)
Q Consensus 261 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p-~~~~~~l~~L~~L~l~~~~~~ 314 (562)
++|-++.+- ++.+|.+|+.||+++| .+.... -..++.+..|+.|.+.||..-
T Consensus 240 rnN~l~tL~-gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTLR-GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhhh-hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999888875 7889999999999987 333222 122566788899999988764
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.61 E-value=1.9e-05 Score=83.23 Aligned_cols=85 Identities=31% Similarity=0.285 Sum_probs=38.7
Q ss_pred CCCCCcEEEecCC-CCcc--cCcccCCcccCcEEeCCCC--Ccccc----chhhhCCCCCcEEeccCcCCCCccchhhhc
Q 046723 228 FMPSLKVLNLSHC-ELTK--LPVGISELVSLQHLDLSES--DIEEL----PGELKALVNLKCLDLEYTGNLITIPRQLIS 298 (562)
Q Consensus 228 ~l~~L~~L~l~~~-~~~~--lp~~~~~l~~L~~L~l~~~--~l~~l----p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~ 298 (562)
.+++|+.|.+.++ .+.. +-......++|+.|+++++ ..... ......+.+|+.|++.++..+...--..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3555555555555 3333 2233344555666666542 11111 112233455666666665433333222122
Q ss_pred -CCCCCCEEEecCCC
Q 046723 299 -NLSRLQVLRMFGAS 312 (562)
Q Consensus 299 -~l~~L~~L~l~~~~ 312 (562)
.+++|++|.+.+|.
T Consensus 266 ~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCS 280 (482)
T ss_pred hhCCCcceEccCCCC
Confidence 25566666655554
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.28 E-value=6.2e-05 Score=79.28 Aligned_cols=240 Identities=20% Similarity=0.199 Sum_probs=128.0
Q ss_pred CcccCcEEeCCCC-Cccc--cchhhhCCCCCcEEeccCc-CCCCccc---hhhhcCCCCCCEEEecCCCccchhcccccc
Q 046723 251 ELVSLQHLDLSES-DIEE--LPGELKALVNLKCLDLEYT-GNLITIP---RQLISNLSRLQVLRMFGASHKAIKEASENS 323 (562)
Q Consensus 251 ~l~~L~~L~l~~~-~l~~--lp~~~~~l~~L~~L~l~~~-~~l~~~p---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 323 (562)
..++|+.|.+.++ .+.. +-......++|+.|++++| ......+ ......+++|+.|++..+...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i--------- 256 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV--------- 256 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc---------
Confidence 3678888888887 5554 4456677888999998873 2322222 122455688888888877632
Q ss_pred cccCCcccchhhhcC-ccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhh-hhhhcccCeeeeccc
Q 046723 324 ILFGGGELIVEELLG-LKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSA-LAYLKQLNRLQIANS 401 (562)
Q Consensus 324 ~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~l~~L~~L~l~~~ 401 (562)
....+..+.. +++|+.|.+..........+......+++|++|++++|...++..+.. ..++++|+.|.+..+
T Consensus 257 -----sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 257 -----TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred -----CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 1223333333 677777775544433334444445555578888888888775543322 344666666655444
Q ss_pred cc---cceeeccchhhhhhhhh-ccccEEEEecCCCCCCCcc--ccccCCCc-eEEEecCcch-hhhhcCCCCCCccccc
Q 046723 402 VI---LEELKMDYAEEVQQFAF-RSLNMVEICNCIKLKDLTF--LVFAPNLK-SIKVGICHAM-EEIASEGKFAEVPEVM 473 (562)
Q Consensus 402 ~~---l~~l~~~~~~~~~~~~~-~~L~~L~L~~c~~l~~l~~--l~~l~~L~-~L~L~~c~~l-~~l~~~~~~~~~~~~~ 473 (562)
.. ++........ ... ..+..+.+.+|++++++.. .+ ..... .+.+.+|+.+ ..+..
T Consensus 332 ~~c~~l~~~~l~~~~----~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~----------- 395 (482)
T KOG1947|consen 332 NGCPSLTDLSLSGLL----TLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLEL----------- 395 (482)
T ss_pred CCCccHHHHHHHHhh----ccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHH-----------
Confidence 32 3322211100 001 1344444455555444321 22 22222 4555666655 32211
Q ss_pred cCCCCccccceeeccCCcCCcccCcCCCC--CCCcceeeeccCCCCcccc
Q 046723 474 ANLNPFEKLQNLEVAGARNLKSIYWKPLP--FPHLKAMSFLHCKKLKKLP 521 (562)
Q Consensus 474 ~~~~~~~~L~~L~l~~c~~L~~~~~~~~~--~~~L~~L~i~~C~~L~~lp 521 (562)
....+..|+.|.+..|.....-.....+ ..+++.+.+.+|+....-.
T Consensus 396 -~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 396 -RLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred -HhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 2223334888888888766543322111 4566777777776655443
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.27 E-value=4e-05 Score=62.73 Aligned_cols=108 Identities=25% Similarity=0.349 Sum_probs=82.4
Q ss_pred ccccEEEccccCccccchh--hhcCCCCCcEEEecCCCCcccCcccCC-cccCcEEeCCCCCccccchhhhCCCCCcEEe
Q 046723 206 PHLLTLFLNENNLRKIHND--FFQFMPSLKVLNLSHCELTKLPVGISE-LVSLQHLDLSESDIEELPGELKALVNLKCLD 282 (562)
Q Consensus 206 ~~L~~L~l~~~~l~~~~~~--~~~~l~~L~~L~l~~~~~~~lp~~~~~-l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~ 282 (562)
..+..++|+.|.+..++.. .+....+|...++++|.+..+|+.+.. ++.+.+|++.+|.++++|..+..++.|+.++
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 4456677787776655432 256677888889999999988887754 4588999999999999999999999999999
Q ss_pred ccCcCCCCccchhhhcCCCCCCEEEecCCCccc
Q 046723 283 LEYTGNLITIPRQLISNLSRLQVLRMFGASHKA 315 (562)
Q Consensus 283 l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~ 315 (562)
++.| .+...|.- +..+.+|-.|+..++....
T Consensus 107 l~~N-~l~~~p~v-i~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 107 LRFN-PLNAEPRV-IAPLIKLDMLDSPENARAE 137 (177)
T ss_pred cccC-ccccchHH-HHHHHhHHHhcCCCCcccc
Confidence 9987 56666765 5558888888877765543
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.20 E-value=0.00048 Score=60.46 Aligned_cols=105 Identities=24% Similarity=0.328 Sum_probs=68.0
Q ss_pred ccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccC-CcccCcEEeCCCCCccccch--hhhCCCCCcEEe
Q 046723 206 PHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGIS-ELVSLQHLDLSESDIEELPG--ELKALVNLKCLD 282 (562)
Q Consensus 206 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~-~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~ 282 (562)
.+...+++++|.+..++. |..++.|.+|.+.+|.|+.+-+.+. .+++|+.|.+.+|++.++-. .+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 455667777777766654 6777888888888888877755554 35568888888877765432 345667777777
Q ss_pred ccCcCCCCcc---chhhhcCCCCCCEEEecCCCc
Q 046723 283 LEYTGNLITI---PRQLISNLSRLQVLRMFGASH 313 (562)
Q Consensus 283 l~~~~~l~~~---p~~~~~~l~~L~~L~l~~~~~ 313 (562)
+-+|+ ...- -.-.+..+|+|+.|++.+...
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEeehhhhhH
Confidence 77663 2221 122356677777777766543
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.99 E-value=0.00032 Score=64.29 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=38.6
Q ss_pred cccceeeccccCCCc----cchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCC-----
Q 046723 367 CTRALLLQCFNDSTL----LEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDL----- 437 (562)
Q Consensus 367 ~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l----- 437 (562)
+|+.+.+..++.... ..+..+..+++|+.|++.++. ++........ ..-..-+.|+.|.+..| .++.-
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La-~al~~W~~lrEL~lnDC-lls~~G~~~v 262 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLA-DALCEWNLLRELRLNDC-LLSNEGVKSV 262 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHH-HHhcccchhhhccccch-hhccccHHHH
Confidence 555555554432211 222234556677777776652 2111110000 00011244677777777 33331
Q ss_pred -ccc--cccCCCceEEEecCc
Q 046723 438 -TFL--VFAPNLKSIKVGICH 455 (562)
Q Consensus 438 -~~l--~~l~~L~~L~L~~c~ 455 (562)
..+ ...|+|..|...+..
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred HHHhhhhcCCCccccccchhh
Confidence 111 245677777666543
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=9.1e-05 Score=68.00 Aligned_cols=104 Identities=25% Similarity=0.225 Sum_probs=73.0
Q ss_pred CccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCccccch--hhhCCCCCcEEe
Q 046723 205 CPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELPG--ELKALVNLKCLD 282 (562)
Q Consensus 205 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~ 282 (562)
+.+.+.|+.-++.++++.- ...++.|++|.|+-|+|+.+ ..+..+++|+.|+|+.|.|.++-+ -+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3455556666777776633 67788888888888888877 447778888888888887776543 367788888888
Q ss_pred ccCcCCCCccch----hhhcCCCCCCEEEecCC
Q 046723 283 LEYTGNLITIPR----QLISNLSRLQVLRMFGA 311 (562)
Q Consensus 283 l~~~~~l~~~p~----~~~~~l~~L~~L~l~~~ 311 (562)
|..|+....-+. ..+.-||+|++|+=...
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 887765554443 34566888888875433
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.84 E-value=0.00069 Score=62.06 Aligned_cols=82 Identities=29% Similarity=0.385 Sum_probs=44.5
Q ss_pred ccceEEeccccccccCCCCCCCccccEEEcccc--CccccchhhhcCCCCCcEEEecCCCCccc--CcccCCcccCcEEe
Q 046723 184 EKARRLSLMQNQIRNLSEIPTCPHLLTLFLNEN--NLRKIHNDFFQFMPSLKVLNLSHCELTKL--PVGISELVSLQHLD 259 (562)
Q Consensus 184 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~--~l~~~~~~~~~~l~~L~~L~l~~~~~~~l--p~~~~~l~~L~~L~ 259 (562)
..+..+++.+..++.+..+..+++|+.|.+++| .+..-..-....+++|++|++++|++..+ -..+..+.+|..|+
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 455566666666666666667777777777766 32211111134457777777777755432 12234445555555
Q ss_pred CCCCCc
Q 046723 260 LSESDI 265 (562)
Q Consensus 260 l~~~~l 265 (562)
+.+|..
T Consensus 123 l~n~~~ 128 (260)
T KOG2739|consen 123 LFNCSV 128 (260)
T ss_pred cccCCc
Confidence 555533
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.60 E-value=0.0033 Score=57.83 Aligned_cols=84 Identities=20% Similarity=0.271 Sum_probs=43.3
Q ss_pred cccceEEecccccccc-----C-CCCCCCccccEEEccccCcc----ccch------hhhcCCCCCcEEEecCCCCc-cc
Q 046723 183 WEKARRLSLMQNQIRN-----L-SEIPTCPHLLTLFLNENNLR----KIHN------DFFQFMPSLKVLNLSHCELT-KL 245 (562)
Q Consensus 183 ~~~l~~L~l~~~~~~~-----l-~~~~~~~~L~~L~l~~~~l~----~~~~------~~~~~l~~L~~L~l~~~~~~-~l 245 (562)
+..+..+++++|.+.. + ..+.+-.+|++..+++-... .++. ..+-+|++|+..+|+.|.+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4566777777776543 1 11234456666666522111 1111 11345677777777776443 22
Q ss_pred C----cccCCcccCcEEeCCCCCcc
Q 046723 246 P----VGISELVSLQHLDLSESDIE 266 (562)
Q Consensus 246 p----~~~~~l~~L~~L~l~~~~l~ 266 (562)
| .-|+.-+.|.+|.+++|.+.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCC
Confidence 2 23455566666666666554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.00081 Score=61.95 Aligned_cols=103 Identities=20% Similarity=0.098 Sum_probs=54.8
Q ss_pred CCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEecccc
Q 046723 275 LVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHG 354 (562)
Q Consensus 275 l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 354 (562)
+.+.+.|+..|| .+..+.. ..+++.|+.|.++-|.+. .+..+..+++|+.|.+..+.+.+
T Consensus 18 l~~vkKLNcwg~-~L~DIsi--c~kMp~lEVLsLSvNkIs-----------------sL~pl~rCtrLkElYLRkN~I~s 77 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI--CEKMPLLEVLSLSVNKIS-----------------SLAPLQRCTRLKELYLRKNCIES 77 (388)
T ss_pred HHHhhhhcccCC-CccHHHH--HHhcccceeEEeeccccc-----------------cchhHHHHHHHHHHHHHhccccc
Confidence 344455555555 3444422 455666666666655443 34455556666666666666555
Q ss_pred hHHHHhhhhhhccccceeeccccCCCccc----hhhhhhhcccCeeee
Q 046723 355 LQSFLRSWKLRRCTRALLLQCFNDSTLLE----VSALAYLKQLNRLQI 398 (562)
Q Consensus 355 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l 398 (562)
+.++.-..++ ++|+.|.|..++...... ...+..+|+|++|+=
T Consensus 78 ldEL~YLknl-psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 78 LDELEYLKNL-PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HHHHHHHhcC-chhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 5554333332 266666666555444332 113556677777753
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.19 E-value=0.0026 Score=58.40 Aligned_cols=108 Identities=29% Similarity=0.291 Sum_probs=71.4
Q ss_pred CCccccEEEccccCccccchhhhcCCCCCcEEEecCC--CCc-ccCcccCCcccCcEEeCCCCCccccc--hhhhCCCCC
Q 046723 204 TCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHC--ELT-KLPVGISELVSLQHLDLSESDIEELP--GELKALVNL 278 (562)
Q Consensus 204 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~--~~~-~lp~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L 278 (562)
.+..|+.|++.+..++.+.. +..+++|++|+++.| .+. .++.....+++|++|++++|++..+. .....+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 34556666666666655533 667889999999988 333 55555566789999999999776321 245677788
Q ss_pred cEEeccCcCCCC--ccchhhhcCCCCCCEEEecCCCc
Q 046723 279 KCLDLEYTGNLI--TIPRQLISNLSRLQVLRMFGASH 313 (562)
Q Consensus 279 ~~L~l~~~~~l~--~~p~~~~~~l~~L~~L~l~~~~~ 313 (562)
..|++..|.... ..-...+.-+++|.+|+-.++..
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 888888874322 22234456678888887766543
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.00076 Score=59.29 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=42.5
Q ss_pred hhhhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCC--CccccccCCCceEEEecCcc
Q 046723 386 ALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKD--LTFLVFAPNLKSIKVGICHA 456 (562)
Q Consensus 386 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~~ 456 (562)
.+..++.++.|.+.+|.++.+...+.... ..++|+.|+|++|+.+++ +.++..+++|+.|.|.+.+.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcc----cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 45566667777777776666554443332 367777777777777776 55666777777776665443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.76 E-value=0.0044 Score=33.80 Aligned_cols=19 Identities=42% Similarity=0.593 Sum_probs=9.9
Q ss_pred CcEEEecCCCCcccCcccC
Q 046723 232 LKVLNLSHCELTKLPVGIS 250 (562)
Q Consensus 232 L~~L~l~~~~~~~lp~~~~ 250 (562)
|++|++++|+++.+|.+|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.23 E-value=0.074 Score=44.44 Aligned_cols=100 Identities=23% Similarity=0.382 Sum_probs=32.4
Q ss_pred CCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCc-ccCCcccCcEEeCCCCCccccch-hhhCCCCCcEE
Q 046723 204 TCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPV-GISELVSLQHLDLSESDIEELPG-ELKALVNLKCL 281 (562)
Q Consensus 204 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L 281 (562)
.+.+|+.+.+.. .+..+....|..+++|+.+.+.++ +..++. .+.++.+|+.+.+.. .+..++. .+...++|+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 334444444432 233444444444444444444442 333321 233333444444433 2322222 22334445544
Q ss_pred eccCcCCCCccchhhhcCCCCCCEEEec
Q 046723 282 DLEYTGNLITIPRQLISNLSRLQVLRMF 309 (562)
Q Consensus 282 ~l~~~~~l~~~p~~~~~~l~~L~~L~l~ 309 (562)
++.. .+..++...+.+. +|+.+.+.
T Consensus 87 ~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 87 DIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred ccCc--cccEEchhhhcCC-CceEEEEC
Confidence 4432 2333444334443 44444443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.00 E-value=0.01 Score=32.31 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=13.0
Q ss_pred cCcEEeCCCCCccccchhhhC
Q 046723 254 SLQHLDLSESDIEELPGELKA 274 (562)
Q Consensus 254 ~L~~L~l~~~~l~~lp~~~~~ 274 (562)
+|++|++++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466666666666666665443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.51 E-value=0.026 Score=28.51 Aligned_cols=17 Identities=29% Similarity=0.729 Sum_probs=9.7
Q ss_pred CCcceeeeccCCCCcccc
Q 046723 504 PHLKAMSFLHCKKLKKLP 521 (562)
Q Consensus 504 ~~L~~L~i~~C~~L~~lp 521 (562)
++|+.|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467778888876 77776
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.33 E-value=0.013 Score=51.69 Aligned_cols=40 Identities=23% Similarity=0.139 Sum_probs=27.4
Q ss_pred hccccceeeccccCCCccchhhhhhhcccCeeeecccccc
Q 046723 365 RRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVIL 404 (562)
Q Consensus 365 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 404 (562)
.++|+.|++++|+.+++-.+..+..+++|+.|.+.+.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 3477777777777777777666777777777777665443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.04 E-value=0.039 Score=27.86 Aligned_cols=15 Identities=47% Similarity=0.676 Sum_probs=6.0
Q ss_pred CCcEEEecCCCCccc
Q 046723 231 SLKVLNLSHCELTKL 245 (562)
Q Consensus 231 ~L~~L~l~~~~~~~l 245 (562)
+|++|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 445555555554444
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.64 E-value=0.22 Score=41.51 Aligned_cols=117 Identities=19% Similarity=0.373 Sum_probs=56.5
Q ss_pred ccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccC-cccCCcccCc
Q 046723 180 VRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP-VGISELVSLQ 256 (562)
Q Consensus 180 ~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~ 256 (562)
+.+..+++.+.+.. .+..+. .+..+.+|+.+.+..+ +..++...|..+++|+.+.+.+ .+..++ ..+..+.+|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44455677777663 455443 3567777888887764 6677777777887888888865 444443 3455677888
Q ss_pred EEeCCCCCccccchh-hhCCCCCcEEeccCcCCCCccchhhhcCCCCC
Q 046723 257 HLDLSESDIEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRL 303 (562)
Q Consensus 257 ~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L 303 (562)
.+.+..+ +..++.. +.+. +|+.+.+.. .+..++...+.++++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 8887654 5555443 4444 777777764 4556666656666655
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.96 E-value=0.0041 Score=55.91 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=61.6
Q ss_pred CCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEE
Q 046723 202 IPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELPGELKALVNLKCL 281 (562)
Q Consensus 202 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 281 (562)
+..+....+|+++.+.+..+... |+.+..|..|+++.+++..+|..++.+..++.+++.+|..+..|.+.+..+.++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 34556667777777766655544 56667777777777777777777777777777777777777777777777778777
Q ss_pred eccCcC
Q 046723 282 DLEYTG 287 (562)
Q Consensus 282 ~l~~~~ 287 (562)
+..++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 777764
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.23 E-value=0.01 Score=53.45 Aligned_cols=95 Identities=22% Similarity=0.158 Sum_probs=80.9
Q ss_pred ccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhh
Q 046723 218 LRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLI 297 (562)
Q Consensus 218 l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~ 297 (562)
++.+|-.-+..+....+||++.+.+..+-..++-++.|..|+++.+.+..+|...+.+..++++++..| +....|.+ .
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s-~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS-Q 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc-c
Confidence 334443336678889999999998888888888899999999999999999999999999999998876 78889987 8
Q ss_pred cCCCCCCEEEecCCCcc
Q 046723 298 SNLSRLQVLRMFGASHK 314 (562)
Q Consensus 298 ~~l~~L~~L~l~~~~~~ 314 (562)
++++.+++++..++.+.
T Consensus 108 ~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccCCcchhhhccCcch
Confidence 89999999999887654
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.92 E-value=0.47 Score=26.82 Aligned_cols=19 Identities=37% Similarity=0.615 Sum_probs=9.4
Q ss_pred ccCcEEeCCCCCccccchh
Q 046723 253 VSLQHLDLSESDIEELPGE 271 (562)
Q Consensus 253 ~~L~~L~l~~~~l~~lp~~ 271 (562)
++|++|+|.+|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.92 E-value=0.47 Score=26.82 Aligned_cols=19 Identities=37% Similarity=0.615 Sum_probs=9.4
Q ss_pred ccCcEEeCCCCCccccchh
Q 046723 253 VSLQHLDLSESDIEELPGE 271 (562)
Q Consensus 253 ~~L~~L~l~~~~l~~lp~~ 271 (562)
++|++|+|.+|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555443
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.34 E-value=0.47 Score=26.83 Aligned_cols=21 Identities=43% Similarity=0.806 Sum_probs=13.7
Q ss_pred CCCCcEEEecCCCCcccCccc
Q 046723 229 MPSLKVLNLSHCELTKLPVGI 249 (562)
Q Consensus 229 l~~L~~L~l~~~~~~~lp~~~ 249 (562)
+++|++|++++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356677777777777776543
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.34 E-value=0.47 Score=26.83 Aligned_cols=21 Identities=43% Similarity=0.806 Sum_probs=13.7
Q ss_pred CCCCcEEEecCCCCcccCccc
Q 046723 229 MPSLKVLNLSHCELTKLPVGI 249 (562)
Q Consensus 229 l~~L~~L~l~~~~~~~lp~~~ 249 (562)
+++|++|++++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356677777777777776543
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.88 E-value=0.78 Score=25.99 Aligned_cols=16 Identities=19% Similarity=0.690 Sum_probs=11.0
Q ss_pred CCcceeeeccCCCCcc
Q 046723 504 PHLKAMSFLHCKKLKK 519 (562)
Q Consensus 504 ~~L~~L~i~~C~~L~~ 519 (562)
|+|++|++.+|+++++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 5677777777776654
No 85
>PRK04841 transcriptional regulator MalT; Provisional
Probab=73.39 E-value=19 Score=41.35 Aligned_cols=123 Identities=15% Similarity=0.125 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHhcCCCChhHHHHHHHHHhccCCCCCCCccchhhhhhh-hccCCCchhhhhhhhhhcc
Q 046723 9 QLAQTAARECGGLPLALITIGRAMACKKTPEEWSYAIEVLRTSSSQFPGLGNEVYPLLKF-SYDSLPSDTIRSCHLYCSL 87 (562)
Q Consensus 9 ~i~~~i~~~c~GlPLai~~ig~~L~~~~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~-sy~~L~~~~~k~cfl~~a~ 87 (562)
+...++.+.|+|.|+++..++..+....... ......+... ....+...+.- -|+.||++ .+..+...|+
T Consensus 206 ~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~ 276 (903)
T PRK04841 206 AESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARRLAGI------NASHLSDYLVEEVLDNVDLE-TRHFLLRCSV 276 (903)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhhcCC------CchhHHHHHHHHHHhcCCHH-HHHHHHHhcc
Confidence 3457899999999999999998876421100 1111111110 01234444433 38899996 9999999999
Q ss_pred cCCCccccHHHHHHHHHHCCCcccCCCchhhHhhHHHHHHHHHhccccc-c--CCCcEEEchhHHHHHHHHh
Q 046723 88 YPEDYCISKEKLIDCWIGERLLTERDRTGEQKEGYHILGILLHACLLEE-G--GGGEVKMHDVIRDMALWIA 156 (562)
Q Consensus 88 fp~~~~~~~~~Li~~wiaeg~~~~~~~~~~~~~~~~~~~~L~~~~l~~~-~--~~~~~~mhdl~~~l~~~~~ 156 (562)
++. ++.. +... ... .+.+...++.|.+.+++.. . +...+.+|+++++..+...
T Consensus 277 ~~~---~~~~-l~~~-----l~~-------~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 277 LRS---MNDA-LIVR-----VTG-------EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ccc---CCHH-HHHH-----HcC-------CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 862 2322 2211 111 1234667899999998653 2 2347889999999987654
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=69.27 E-value=3.2 Score=23.54 Aligned_cols=17 Identities=59% Similarity=0.720 Sum_probs=8.9
Q ss_pred CCcEEEecCCCCcccCc
Q 046723 231 SLKVLNLSHCELTKLPV 247 (562)
Q Consensus 231 ~L~~L~l~~~~~~~lp~ 247 (562)
+|++|++++|+++.+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 34555555555555543
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=64.53 E-value=0.3 Score=50.68 Aligned_cols=183 Identities=23% Similarity=0.242 Sum_probs=92.3
Q ss_pred cceEEeccccccccC------CCCCCCccccEEEccccCccccchhh----hcCC-CCCcEEEecCCCCc-----ccCcc
Q 046723 185 KARRLSLMQNQIRNL------SEIPTCPHLLTLFLNENNLRKIHNDF----FQFM-PSLKVLNLSHCELT-----KLPVG 248 (562)
Q Consensus 185 ~l~~L~l~~~~~~~l------~~~~~~~~L~~L~l~~~~l~~~~~~~----~~~l-~~L~~L~l~~~~~~-----~lp~~ 248 (562)
.+..+.+.+|.+..- ..+....+|..|++++|.+....... +... ..+++|++..|.++ .+...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 366777777776552 22456677777888877776322211 1222 44566676666554 23455
Q ss_pred cCCcccCcEEeCCCCCcc-----ccchhhh----CCCCCcEEeccCcCCCCccc---hhhhcCCCC-CCEEEecCCCccc
Q 046723 249 ISELVSLQHLDLSESDIE-----ELPGELK----ALVNLKCLDLEYTGNLITIP---RQLISNLSR-LQVLRMFGASHKA 315 (562)
Q Consensus 249 ~~~l~~L~~L~l~~~~l~-----~lp~~~~----~l~~L~~L~l~~~~~l~~~p---~~~~~~l~~-L~~L~l~~~~~~~ 315 (562)
+....+++.++++.|.+. .++..+. ...++++|++.+|......- ...+...+. ++.|++..|...+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 555677777777777553 2223333 35667777777663221100 112333444 4556666554432
Q ss_pred hhcccccccccCCcccchhhhcCc-cccceeeEEEecccc--hHHHHhhhhhhccccceeeccccC
Q 046723 316 IKEASENSILFGGGELIVEELLGL-KHLEVISLTLRNSHG--LQSFLRSWKLRRCTRALLLQCFND 378 (562)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~ 378 (562)
. +.......+..+ ..++++++..+.+.. ...+......++.++.+.+.++..
T Consensus 248 ~-----------g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 248 V-----------GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred H-----------HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 1 011223333333 455666666555432 223333333334666666665443
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=63.87 E-value=0.3 Score=50.69 Aligned_cols=183 Identities=23% Similarity=0.180 Sum_probs=115.3
Q ss_pred ccceEEeccccccccC------CCCCCC-ccccEEEccccCccccc----hhhhcCCCCCcEEEecCCCCcc-----cCc
Q 046723 184 EKARRLSLMQNQIRNL------SEIPTC-PHLLTLFLNENNLRKIH----NDFFQFMPSLKVLNLSHCELTK-----LPV 247 (562)
Q Consensus 184 ~~l~~L~l~~~~~~~l------~~~~~~-~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~~-----lp~ 247 (562)
..+..|++.+|.+... ..+... +.+++|.+..|.++... .+.+....+++.++++.|.+.. ++.
T Consensus 115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~ 194 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ 194 (478)
T ss_pred ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence 4666788888877642 123333 67788888877766432 2235568899999999996642 233
Q ss_pred cc----CCcccCcEEeCCCCCccc-----cchhhhCCCC-CcEEeccCcCCCCc----cchhhhcCC-CCCCEEEecCCC
Q 046723 248 GI----SELVSLQHLDLSESDIEE-----LPGELKALVN-LKCLDLEYTGNLIT----IPRQLISNL-SRLQVLRMFGAS 312 (562)
Q Consensus 248 ~~----~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~-L~~L~l~~~~~l~~----~p~~~~~~l-~~L~~L~l~~~~ 312 (562)
.+ ....++++|++.+|.++. +-..+...+. +..+++..|..-+. +.+. +..+ ..++++++..|.
T Consensus 195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~-l~~~~~~l~~l~l~~ns 273 (478)
T KOG4308|consen 195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPC-LSVLSETLRVLDLSRNS 273 (478)
T ss_pred hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHH-hcccchhhhhhhhhcCC
Confidence 33 358899999999997762 2223455555 67799987733222 1122 3445 677999999998
Q ss_pred ccchhcccccccccCCcccchhhhcCccccceeeEEEecccchHH--HHhhhhhhccccceeeccccC
Q 046723 313 HKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQS--FLRSWKLRRCTRALLLQCFND 378 (562)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--l~~~~~~~~~L~~L~l~~~~~ 378 (562)
+.. .+.......+..+.+++.+.+..+....... ..........+..+.+.+++.
T Consensus 274 i~~-----------~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 330 (478)
T KOG4308|consen 274 ITE-----------KGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGK 330 (478)
T ss_pred ccc-----------cchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCc
Confidence 765 2234456677788899999999887765433 233333333555555554443
No 89
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=59.26 E-value=4.9 Score=22.02 Aligned_cols=12 Identities=50% Similarity=0.775 Sum_probs=4.7
Q ss_pred cCcEEeCCCCCc
Q 046723 254 SLQHLDLSESDI 265 (562)
Q Consensus 254 ~L~~L~l~~~~l 265 (562)
+|++|++++|.+
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 444444444443
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=57.41 E-value=8.8 Score=21.81 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=7.3
Q ss_pred CCCcEEEecCCCCc
Q 046723 230 PSLKVLNLSHCELT 243 (562)
Q Consensus 230 ~~L~~L~l~~~~~~ 243 (562)
.+|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555543
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=43.77 E-value=19 Score=20.73 Aligned_cols=13 Identities=54% Similarity=0.810 Sum_probs=7.1
Q ss_pred CCCcEEEecCCCC
Q 046723 230 PSLKVLNLSHCEL 242 (562)
Q Consensus 230 ~~L~~L~l~~~~~ 242 (562)
++|++|+|++|.+
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 3455556555544
No 92
>KOG4062 consensus 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair [Replication, recombination and repair]
Probab=29.86 E-value=62 Score=27.70 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHcCCchhHHHHHHHHhcCC
Q 046723 6 DILQLAQTAARECGGLPLALITIGRAMACK 35 (562)
Q Consensus 6 ~l~~i~~~i~~~c~GlPLai~~ig~~L~~~ 35 (562)
.|.+||++| |.|-|++.+|++++.+
T Consensus 108 tY~~iA~~i-----G~PsaaRaVg~A~~~n 132 (178)
T KOG4062|consen 108 TYGQIARRI-----GNPSAARAVGSAMAHN 132 (178)
T ss_pred eHHHHHHHh-----CCcHHHHHHHHHHccC
Confidence 366777776 8899999999999874
No 93
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=26.28 E-value=65 Score=20.82 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=16.5
Q ss_pred CChhHHHHHHHHHHHcCCc
Q 046723 3 SHPDILQLAQTAARECGGL 21 (562)
Q Consensus 3 ~~~~l~~i~~~i~~~c~Gl 21 (562)
.||+|+++-+++-++.+|+
T Consensus 19 gPPDLdel~r~l~~kl~~~ 37 (42)
T PF12221_consen 19 GPPDLDELFRKLQDKLGGL 37 (42)
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 5899999999999988875
Done!