Query 046723
Match_columns 562
No_of_seqs 339 out of 3209
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 06:11:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046723.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046723hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.9 2.5E-25 8.4E-30 222.5 24.1 234 182-454 42-275 (347)
2 4fmz_A Internalin; leucine ric 99.9 1.1E-25 3.7E-30 225.1 20.8 299 164-515 46-344 (347)
3 1o6v_A Internalin A; bacterial 99.9 1.3E-23 4.5E-28 218.6 24.8 266 165-454 49-319 (466)
4 3o6n_A APL1; leucine-rich repe 99.9 6E-24 2E-28 216.0 19.5 287 181-521 42-334 (390)
5 2id5_A Lingo-1, leucine rich r 99.9 3.6E-23 1.2E-27 216.1 24.4 310 166-515 15-331 (477)
6 3vq2_A TLR4, TOLL-like recepto 99.9 1E-23 3.4E-28 227.2 19.6 107 180-286 52-163 (606)
7 3v47_A TOLL-like receptor 5B a 99.9 3.2E-23 1.1E-27 215.1 21.9 348 165-535 13-401 (455)
8 1o6v_A Internalin A; bacterial 99.9 5.3E-23 1.8E-27 213.9 22.8 302 165-522 71-392 (466)
9 2z81_A CD282 antigen, TOLL-lik 99.9 4.2E-23 1.4E-27 219.6 22.0 143 172-315 15-162 (549)
10 2z7x_B TOLL-like receptor 1, v 99.9 8.4E-23 2.9E-27 215.7 23.9 142 165-313 3-150 (520)
11 2id5_A Lingo-1, leucine rich r 99.9 5.3E-23 1.8E-27 214.8 21.8 295 188-523 15-314 (477)
12 4ecn_A Leucine-rich repeat pro 99.9 1.1E-23 3.9E-28 231.3 17.2 310 180-525 444-826 (876)
13 4eco_A Uncharacterized protein 99.9 7E-24 2.4E-28 228.7 14.5 327 180-525 202-586 (636)
14 2z63_A TOLL-like receptor 4, v 99.9 4.2E-23 1.4E-27 220.7 20.2 343 179-538 47-527 (570)
15 3oja_B Anopheles plasmodium-re 99.9 3.3E-23 1.1E-27 222.1 19.1 279 182-515 73-356 (597)
16 3bz5_A Internalin-J, INLJ; leu 99.9 5.2E-23 1.8E-27 212.5 18.2 294 165-513 45-348 (457)
17 2z63_A TOLL-like receptor 4, v 99.9 1.5E-22 5E-27 216.5 21.3 149 165-316 10-164 (570)
18 3o6n_A APL1; leucine-rich repe 99.9 1.3E-22 4.4E-27 206.1 19.6 271 203-524 42-314 (390)
19 3vq2_A TLR4, TOLL-like recepto 99.9 2E-22 6.7E-27 217.1 21.8 326 165-522 14-393 (606)
20 3t6q_A CD180 antigen; protein- 99.9 1.4E-22 4.8E-27 218.2 20.5 271 216-522 264-540 (606)
21 2ft3_A Biglycan; proteoglycan, 99.9 1.6E-22 5.3E-27 200.8 19.3 295 184-515 33-331 (332)
22 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-22 4E-27 209.8 18.9 287 179-520 37-323 (457)
23 3rgz_A Protein brassinosteroid 99.9 6.5E-23 2.2E-27 226.2 18.0 147 165-313 181-330 (768)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.8E-22 1.3E-26 212.6 23.2 142 165-313 34-181 (562)
25 3oja_B Anopheles plasmodium-re 99.9 9.7E-23 3.3E-27 218.5 17.3 290 182-525 49-344 (597)
26 1xku_A Decorin; proteoglycan, 99.9 7.9E-22 2.7E-26 195.5 22.4 294 184-514 31-329 (330)
27 3t6q_A CD180 antigen; protein- 99.9 5.1E-22 1.7E-26 213.9 21.5 334 165-519 108-514 (606)
28 2z81_A CD282 antigen, TOLL-lik 99.9 6.2E-22 2.1E-26 210.5 21.4 145 165-310 29-181 (549)
29 3v47_A TOLL-like receptor 5B a 99.9 8.2E-22 2.8E-26 204.5 20.7 320 165-521 33-412 (455)
30 4ecn_A Leucine-rich repeat pro 99.9 6.4E-22 2.2E-26 217.4 19.6 308 182-517 489-840 (876)
31 4eco_A Uncharacterized protein 99.9 6.5E-22 2.2E-26 213.3 17.8 311 182-521 247-603 (636)
32 2z7x_B TOLL-like receptor 1, v 99.9 6.9E-21 2.4E-25 201.0 24.5 124 187-315 3-129 (520)
33 3rgz_A Protein brassinosteroid 99.9 3.5E-22 1.2E-26 220.4 14.5 336 165-524 203-558 (768)
34 1ziw_A TOLL-like receptor 3; i 99.9 6.1E-21 2.1E-25 208.2 23.0 279 165-454 7-306 (680)
35 4fcg_A Uncharacterized protein 99.9 1.1E-21 3.8E-26 193.8 15.5 220 205-488 80-309 (328)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.6E-20 8.9E-25 198.4 25.1 127 185-315 32-160 (562)
37 3j0a_A TOLL-like receptor 5; m 99.9 2.3E-20 8E-25 208.0 24.3 149 165-315 7-162 (844)
38 4fcg_A Uncharacterized protein 99.9 6.3E-21 2.2E-25 188.4 15.7 230 228-513 79-310 (328)
39 1ziw_A TOLL-like receptor 3; i 99.8 3.5E-20 1.2E-24 202.3 22.3 150 165-315 28-185 (680)
40 3j0a_A TOLL-like receptor 5; m 99.8 8.5E-20 2.9E-24 203.5 24.9 175 187-378 7-186 (844)
41 4g8a_A TOLL-like receptor 4; l 99.8 5.1E-20 1.8E-24 199.2 20.9 143 169-314 38-186 (635)
42 2z80_A TOLL-like receptor 2, v 99.8 4.7E-20 1.6E-24 184.5 18.3 263 170-455 39-312 (353)
43 2z80_A TOLL-like receptor 2, v 99.8 1E-19 3.5E-24 182.1 19.7 266 187-515 34-312 (353)
44 2ft3_A Biglycan; proteoglycan, 99.8 9.5E-20 3.2E-24 180.6 18.8 282 165-491 36-331 (332)
45 1ogq_A PGIP-2, polygalacturona 99.8 1.4E-20 4.8E-25 184.8 11.2 246 184-494 50-305 (313)
46 3o53_A Protein LRIM1, AGAP0063 99.8 4E-21 1.4E-25 189.2 7.0 285 186-518 12-300 (317)
47 1xku_A Decorin; proteoglycan, 99.8 4.6E-19 1.6E-23 175.5 21.6 281 166-490 35-329 (330)
48 1ogq_A PGIP-2, polygalacturona 99.8 1.1E-20 3.9E-25 185.4 9.5 242 165-458 53-305 (313)
49 1jl5_A Outer protein YOPM; leu 99.8 3.6E-19 1.2E-23 183.6 19.8 134 165-313 94-227 (454)
50 3g06_A SSPH2 (leucine-rich rep 99.8 2.9E-19 1E-23 190.0 19.6 253 165-491 43-295 (622)
51 2a5y_B CED-4; apoptosis; HET: 99.8 1.6E-20 5.4E-25 198.4 7.9 143 4-159 312-471 (549)
52 1jl5_A Outer protein YOPM; leu 99.8 1.4E-18 4.8E-23 179.2 22.0 211 165-401 74-287 (454)
53 3zyi_A Leucine-rich repeat-con 99.8 5.4E-19 1.9E-23 182.9 18.5 237 167-455 59-301 (452)
54 3zyj_A Leucine-rich repeat-con 99.8 5E-19 1.7E-23 182.5 16.8 238 166-455 47-290 (440)
55 4g8a_A TOLL-like receptor 4; l 99.8 1.7E-18 6E-23 187.2 21.4 339 164-523 54-560 (635)
56 3g06_A SSPH2 (leucine-rich rep 99.8 1.2E-18 4.2E-23 185.3 19.2 257 184-516 40-296 (622)
57 3zyi_A Leucine-rich repeat-con 99.8 8.7E-19 3E-23 181.4 17.4 242 186-491 56-301 (452)
58 3zyj_A Leucine-rich repeat-con 99.8 9.8E-19 3.4E-23 180.3 17.1 173 164-354 66-245 (440)
59 2z66_A Variable lymphocyte rec 99.8 3.3E-19 1.1E-23 174.6 12.5 128 184-312 28-161 (306)
60 2z66_A Variable lymphocyte rec 99.8 1.4E-18 4.8E-23 170.1 13.9 242 187-456 10-260 (306)
61 1wwl_A Monocyte differentiatio 99.8 1.2E-19 4.1E-24 178.1 5.0 244 183-454 42-306 (312)
62 3o53_A Protein LRIM1, AGAP0063 99.8 1.8E-19 6.2E-24 177.3 4.5 241 182-460 32-278 (317)
63 1ozn_A Reticulon 4 receptor; N 99.8 2.3E-18 7.7E-23 166.8 11.9 218 187-455 14-236 (285)
64 3oja_A Leucine-rich immune mol 99.8 9.7E-19 3.3E-23 182.2 9.7 238 203-488 31-270 (487)
65 1h6u_A Internalin H; cell adhe 99.7 1.9E-17 6.6E-22 161.9 15.4 153 180-356 37-189 (308)
66 1h6u_A Internalin H; cell adhe 99.7 2E-17 6.9E-22 161.8 15.1 203 191-455 26-228 (308)
67 3ogk_B Coronatine-insensitive 99.7 1.8E-18 6.1E-23 185.6 8.2 241 249-519 266-527 (592)
68 1ozn_A Reticulon 4 receptor; N 99.7 5.1E-17 1.7E-21 157.2 16.8 217 166-432 15-236 (285)
69 1z7x_W Ribonuclease inhibitor; 99.7 7.7E-19 2.6E-23 182.4 2.9 310 182-515 54-409 (461)
70 3oja_A Leucine-rich immune mol 99.7 3E-18 1E-22 178.4 5.2 235 182-453 32-271 (487)
71 2z62_A TOLL-like receptor 4, v 99.7 2.2E-16 7.5E-21 152.0 17.2 199 206-454 28-234 (276)
72 2xwt_C Thyrotropin receptor; s 99.7 4.2E-17 1.5E-21 153.4 11.6 83 231-313 32-117 (239)
73 2ast_B S-phase kinase-associat 99.7 3.8E-17 1.3E-21 162.1 11.6 100 208-311 49-152 (336)
74 3ogk_B Coronatine-insensitive 99.7 3.4E-17 1.2E-21 175.7 11.2 300 182-515 162-499 (592)
75 1p9a_G Platelet glycoprotein I 99.7 1.3E-16 4.5E-21 154.4 14.2 200 180-431 6-205 (290)
76 2z62_A TOLL-like receptor 4, v 99.7 2.5E-16 8.7E-21 151.6 15.2 145 168-315 13-163 (276)
77 2xwt_C Thyrotropin receptor; s 99.7 6.6E-17 2.2E-21 152.1 10.8 103 206-311 31-140 (239)
78 3rfs_A Internalin B, repeat mo 99.7 1E-16 3.5E-21 153.9 11.5 157 180-354 37-195 (272)
79 1z7x_W Ribonuclease inhibitor; 99.7 6.6E-18 2.2E-22 175.4 3.1 312 181-518 25-383 (461)
80 2ast_B S-phase kinase-associat 99.7 2.5E-17 8.5E-22 163.5 6.6 199 186-401 49-257 (336)
81 3rfs_A Internalin B, repeat mo 99.7 3E-16 1E-20 150.7 13.8 173 165-353 44-218 (272)
82 2o6q_A Variable lymphocyte rec 99.7 6.7E-16 2.3E-20 148.0 15.9 198 185-432 17-216 (270)
83 4ay9_X Follicle-stimulating ho 99.7 3E-16 1E-20 156.5 13.4 237 189-453 14-255 (350)
84 2p1m_B Transport inhibitor res 99.7 5.7E-17 1.9E-21 174.0 8.1 303 182-516 154-518 (594)
85 2o6q_A Variable lymphocyte rec 99.7 1.9E-15 6.6E-20 144.8 16.5 173 165-354 19-195 (270)
86 4ay9_X Follicle-stimulating ho 99.6 1E-15 3.5E-20 152.5 14.9 104 208-314 11-117 (350)
87 2p1m_B Transport inhibitor res 99.6 1.3E-16 4.5E-21 171.1 6.7 298 183-516 129-493 (594)
88 1p9a_G Platelet glycoprotein I 99.6 2.8E-15 9.4E-20 145.1 13.9 191 165-377 13-206 (290)
89 4ezg_A Putative uncharacterize 99.6 3.5E-15 1.2E-19 135.7 13.2 152 181-353 41-194 (197)
90 2ca6_A RAN GTPase-activating p 99.6 1.4E-16 4.9E-21 161.2 4.4 85 202-286 28-132 (386)
91 1h6t_A Internalin B; cell adhe 99.6 3.5E-15 1.2E-19 144.5 13.1 152 180-355 42-193 (291)
92 2ca6_A RAN GTPase-activating p 99.6 2.1E-16 7.1E-21 160.0 4.6 245 213-491 16-314 (386)
93 3sfz_A APAF-1, apoptotic pepti 99.6 1E-15 3.4E-20 178.5 10.9 142 4-159 303-452 (1249)
94 4glp_A Monocyte differentiatio 99.6 3.2E-15 1.1E-19 146.3 12.7 226 207-454 65-304 (310)
95 3goz_A Leucine-rich repeat-con 99.6 4E-15 1.4E-19 149.1 13.3 242 206-491 22-295 (362)
96 1wwl_A Monocyte differentiatio 99.6 1.7E-15 5.9E-20 148.4 10.3 130 183-314 94-241 (312)
97 3m19_A Variable lymphocyte rec 99.6 1.6E-14 5.5E-19 136.7 16.1 173 165-354 17-193 (251)
98 1h6t_A Internalin B; cell adhe 99.6 3.7E-14 1.3E-18 137.3 17.2 166 165-354 49-214 (291)
99 1m9s_A Internalin B; cell inva 99.6 3.8E-15 1.3E-19 158.2 9.5 173 178-378 37-209 (605)
100 3m19_A Variable lymphocyte rec 99.6 2.4E-14 8.2E-19 135.5 13.8 154 185-355 15-170 (251)
101 1m9s_A Internalin B; cell inva 99.6 1.3E-14 4.3E-19 154.2 12.2 164 167-354 48-211 (605)
102 1xeu_A Internalin C; cellular 99.5 4E-14 1.4E-18 134.8 14.0 154 177-355 34-187 (263)
103 3e6j_A Variable lymphocyte rec 99.5 8.2E-14 2.8E-18 129.8 15.1 145 168-314 25-172 (229)
104 4ezg_A Putative uncharacterize 99.5 8E-14 2.7E-18 126.7 12.7 146 165-314 47-194 (197)
105 2o6s_A Variable lymphocyte rec 99.5 6.9E-14 2.4E-18 128.3 12.4 128 184-312 28-159 (208)
106 1xeu_A Internalin C; cellular 99.5 1.1E-14 3.7E-19 138.8 7.1 148 182-354 17-164 (263)
107 4glp_A Monocyte differentiatio 99.5 2.7E-14 9.3E-19 139.8 9.6 130 184-314 91-237 (310)
108 2v9t_B SLIT homolog 2 protein 99.5 1.6E-13 5.3E-18 127.0 14.2 127 185-312 33-163 (220)
109 1vt4_I APAF-1 related killer D 99.5 1E-14 3.5E-19 157.4 6.8 111 18-152 323-436 (1221)
110 3goz_A Leucine-rich repeat-con 99.5 3.1E-14 1.1E-18 142.5 9.6 158 184-354 22-210 (362)
111 2v9t_B SLIT homolog 2 protein 99.5 1.5E-13 5E-18 127.2 12.6 150 187-353 14-165 (220)
112 2v70_A SLIT-2, SLIT homolog 2 99.5 3E-13 1E-17 125.1 13.6 125 188-314 15-142 (220)
113 2o6s_A Variable lymphocyte rec 99.5 2.8E-13 9.6E-18 124.2 12.4 149 187-352 10-160 (208)
114 2v70_A SLIT-2, SLIT homolog 2 99.5 3E-13 1E-17 125.1 12.7 148 165-314 14-166 (220)
115 3e6j_A Variable lymphocyte rec 99.4 6.1E-13 2.1E-17 123.9 13.1 150 186-353 21-172 (229)
116 2ell_A Acidic leucine-rich nuc 99.4 3.2E-13 1.1E-17 119.3 9.9 129 184-315 24-161 (168)
117 3cvr_A Invasion plasmid antige 99.4 8.4E-13 2.9E-17 138.7 14.3 114 185-314 60-173 (571)
118 1a9n_A U2A', U2A'; complex (nu 99.4 1.7E-13 5.8E-18 122.0 7.6 130 181-313 16-152 (176)
119 2xot_A Amphoterin-induced prot 99.4 6.6E-13 2.3E-17 132.7 12.4 147 166-314 22-176 (361)
120 2xot_A Amphoterin-induced prot 99.4 9.3E-13 3.2E-17 131.7 12.7 177 187-378 21-201 (361)
121 1z6t_A APAF-1, apoptotic prote 99.4 4.3E-13 1.5E-17 143.5 10.6 137 6-156 305-449 (591)
122 2je0_A Acidic leucine-rich nuc 99.4 4.1E-13 1.4E-17 116.0 8.3 123 184-309 17-148 (149)
123 3cvr_A Invasion plasmid antige 99.4 7.6E-13 2.6E-17 139.0 11.8 187 207-461 60-247 (571)
124 1a9n_A U2A', U2A'; complex (nu 99.4 1E-12 3.5E-17 116.9 8.1 144 196-354 9-154 (176)
125 2o6r_A Variable lymphocyte rec 99.3 9.9E-12 3.4E-16 110.6 13.1 127 186-314 9-137 (177)
126 2ell_A Acidic leucine-rich nuc 99.3 7.9E-12 2.7E-16 110.2 11.8 130 164-294 26-164 (168)
127 2je0_A Acidic leucine-rich nuc 99.3 2.8E-12 9.5E-17 110.7 8.5 129 204-347 15-147 (149)
128 1w8a_A SLIT protein; signaling 99.3 8.4E-12 2.9E-16 112.7 11.5 126 187-314 11-139 (192)
129 2wfh_A SLIT homolog 2 protein 99.3 1.6E-11 5.5E-16 110.8 13.2 125 187-314 13-139 (193)
130 4b8c_D Glucose-repressible alc 99.3 6E-12 2.1E-16 137.0 9.4 86 226-313 220-305 (727)
131 1dce_A Protein (RAB geranylger 99.3 3.7E-12 1.3E-16 134.4 6.5 104 207-315 442-547 (567)
132 1dce_A Protein (RAB geranylger 99.2 1.6E-11 5.4E-16 129.6 11.0 121 185-308 442-567 (567)
133 1w8a_A SLIT protein; signaling 99.2 2.3E-11 7.9E-16 109.7 9.0 127 208-353 10-139 (192)
134 2wfh_A SLIT homolog 2 protein 99.2 4.5E-11 1.6E-15 107.8 10.5 127 208-353 12-139 (193)
135 4b8c_D Glucose-repressible alc 99.2 2.1E-11 7.3E-16 132.7 9.0 111 202-315 220-330 (727)
136 2o6r_A Variable lymphocyte rec 99.2 2E-10 6.9E-15 102.1 12.4 124 167-291 12-139 (177)
137 1ds9_A Outer arm dynein; leuci 99.2 7.5E-13 2.6E-17 120.3 -4.5 110 201-314 43-153 (198)
138 2r9u_A Variable lymphocyte rec 99.1 5.5E-10 1.9E-14 98.8 11.2 101 209-313 15-117 (174)
139 3g39_A Variable lymphocyte rec 99.1 4E-10 1.4E-14 99.3 10.2 103 208-314 11-115 (170)
140 2r9u_A Variable lymphocyte rec 99.1 4.1E-10 1.4E-14 99.6 10.2 106 187-294 15-122 (174)
141 1ds9_A Outer arm dynein; leuci 99.1 4.9E-12 1.7E-16 114.9 -3.4 119 217-354 36-154 (198)
142 3g39_A Variable lymphocyte rec 99.0 7.8E-10 2.7E-14 97.4 10.4 101 186-287 11-113 (170)
143 3sb4_A Hypothetical leucine ri 99.0 3.6E-09 1.2E-13 104.1 13.3 284 183-510 24-327 (329)
144 3sb4_A Hypothetical leucine ri 98.8 6.4E-09 2.2E-13 102.3 9.1 263 183-487 48-328 (329)
145 2ifg_A High affinity nerve gro 98.8 2.1E-08 7.1E-13 99.4 9.8 97 190-286 14-113 (347)
146 2ifg_A High affinity nerve gro 98.7 4.1E-08 1.4E-12 97.2 10.3 102 209-314 11-116 (347)
147 4fdw_A Leucine rich hypothetic 98.7 7.3E-07 2.5E-11 89.7 19.5 103 202-310 132-235 (401)
148 4fdw_A Leucine rich hypothetic 98.7 5.8E-07 2E-11 90.4 17.8 144 185-351 136-282 (401)
149 3un9_A NLR family member X1; l 98.6 1.2E-08 4.1E-13 101.7 2.4 129 184-313 72-223 (372)
150 3un9_A NLR family member X1; l 98.6 1.3E-08 4.4E-13 101.5 2.1 37 230-266 101-139 (372)
151 3e4g_A ATP synthase subunit S, 98.4 1.2E-07 4E-12 82.4 4.2 91 367-459 62-154 (176)
152 2ra8_A Uncharacterized protein 98.3 3.2E-06 1.1E-10 83.5 10.3 38 226-265 168-205 (362)
153 4fs7_A Uncharacterized protein 98.2 1.2E-05 4.1E-10 80.9 14.5 125 180-311 67-195 (394)
154 3e4g_A ATP synthase subunit S, 98.1 5.5E-06 1.9E-10 71.9 6.7 39 367-405 115-153 (176)
155 2ra8_A Uncharacterized protein 97.9 1.5E-05 5.1E-10 78.7 6.7 138 203-354 169-321 (362)
156 3rw6_A Nuclear RNA export fact 97.9 5.2E-06 1.8E-10 77.7 2.7 82 227-309 167-259 (267)
157 4fs7_A Uncharacterized protein 97.9 0.00014 4.8E-09 73.0 13.5 127 178-311 88-218 (394)
158 4gt6_A Cell surface protein; l 97.8 0.00046 1.6E-08 69.2 17.1 102 387-512 261-365 (394)
159 1io0_A Tropomodulin; LRR prote 97.8 1.1E-05 3.6E-10 71.8 3.4 38 249-286 61-103 (185)
160 1io0_A Tropomodulin; LRR prote 97.8 2.2E-05 7.4E-10 69.7 5.1 112 202-314 32-164 (185)
161 4gt6_A Cell surface protein; l 97.7 0.0014 4.7E-08 65.7 17.6 100 367-490 266-367 (394)
162 4h09_A Hypothetical leucine ri 97.7 0.0029 9.9E-08 62.9 19.7 127 178-311 40-168 (379)
163 3rw6_A Nuclear RNA export fact 97.6 6.4E-05 2.2E-09 70.3 6.7 81 203-284 167-259 (267)
164 4h09_A Hypothetical leucine ri 95.1 0.053 1.8E-06 53.6 8.5 103 203-309 214-318 (379)
165 3rfe_A Platelet glycoprotein I 94.4 0.057 2E-06 44.2 5.4 51 234-286 12-65 (130)
166 3rfe_A Platelet glycoprotein I 94.1 0.08 2.7E-06 43.3 5.8 53 210-265 12-67 (130)
167 1pgv_A TMD-1, tropomodulin TMD 93.3 0.12 4.1E-06 45.4 5.8 60 226-285 66-135 (197)
168 1pgv_A TMD-1, tropomodulin TMD 92.8 0.13 4.3E-06 45.3 5.2 103 184-286 41-167 (197)
169 2qen_A Walker-type ATPase; unk 71.1 11 0.00039 35.7 8.3 119 9-151 226-347 (350)
170 2fna_A Conserved hypothetical 61.9 23 0.00079 33.6 8.4 117 12-151 233-355 (357)
171 1hqc_A RUVB; extended AAA-ATPa 57.2 8.5 0.00029 36.3 4.2 35 102-136 288-324 (324)
172 1w5s_A Origin recognition comp 39.4 70 0.0024 31.0 7.8 111 9-137 240-371 (412)
173 2lz0_A Uncharacterized protein 26.3 60 0.0021 24.4 3.6 43 218-261 8-51 (100)
174 2vda_B Maltoporin; sugar trans 23.1 42 0.0014 17.7 1.4 18 17-34 7-24 (28)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=2.5e-25 Score=222.52 Aligned_cols=234 Identities=21% Similarity=0.297 Sum_probs=113.9
Q ss_pred ccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCC
Q 046723 182 GWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLS 261 (562)
Q Consensus 182 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 261 (562)
.+++++.|++.++.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++|.++.+| .+..+++|++|+++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence 344555555555555555555555555555555555555544 455555555555555555543 35555555555555
Q ss_pred CCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccc
Q 046723 262 ESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKH 341 (562)
Q Consensus 262 ~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 341 (562)
+|.+..+|. +..+++|++|++++|.....++. +..+++|++|++.+|.... ...+..+++
T Consensus 119 ~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~-----------------~~~~~~l~~ 178 (347)
T 4fmz_A 119 EDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD-----------------VTPIANLTD 178 (347)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC-----------------CGGGGGCTT
T ss_pred CCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC-----------------chhhccCCC
Confidence 555555543 55555555555555544444333 4555555555555554332 111444455
Q ss_pred cceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhc
Q 046723 342 LEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFR 421 (562)
Q Consensus 342 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 421 (562)
|+.|+++.+....+.. ....++|+.|+++++......+ +..+++|+.|++.++ .+..++. .. .++
T Consensus 179 L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n-~l~~~~~-~~------~l~ 243 (347)
T 4fmz_A 179 LYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNN-KITDLSP-LA------NLS 243 (347)
T ss_dssp CSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSS-CCCCCGG-GT------TCT
T ss_pred CCEEEccCCccccccc----ccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCC-ccCCCcc-hh------cCC
Confidence 5555555444444332 1112245555554443222222 444455555555544 3333222 11 144
Q ss_pred cccEEEEecCCCCCCCccccccCCCceEEEecC
Q 046723 422 SLNMVEICNCIKLKDLTFLVFAPNLKSIKVGIC 454 (562)
Q Consensus 422 ~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c 454 (562)
+|++|++++| .++.++.+..+++|++|++++|
T Consensus 244 ~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 244 QLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp TCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred CCCEEECCCC-ccCCChhHhcCCCcCEEEccCC
Confidence 5555555555 3444444455555555555544
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.1e-25 Score=225.12 Aligned_cols=299 Identities=17% Similarity=0.221 Sum_probs=244.8
Q ss_pred ccEEEeeccccccCCCccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCc
Q 046723 164 ENFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELT 243 (562)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 243 (562)
-+.+...+..+...+.+..+++++.|++.+|.+..++.+..+++|++|++++|.++.++. +..+++|++|++++|.++
T Consensus 46 L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~ 123 (347)
T 4fmz_A 46 ITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNIS 123 (347)
T ss_dssp CSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCC
T ss_pred ccEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCccc
Confidence 356677777777788889999999999999999999889999999999999999998753 899999999999999999
Q ss_pred ccCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccc
Q 046723 244 KLPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENS 323 (562)
Q Consensus 244 ~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 323 (562)
.++. +..+++|++|++++|.....+..+..+++|++|++++| .+..++. +..+++|++|++.+|....
T Consensus 124 ~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~-------- 191 (347)
T 4fmz_A 124 DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIED-------- 191 (347)
T ss_dssp CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCC--------
T ss_pred Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccc--------
Confidence 8876 89999999999999955544456899999999999998 5666665 7899999999999997653
Q ss_pred cccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccc
Q 046723 324 ILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVI 403 (562)
Q Consensus 324 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 403 (562)
...+..+++|+.++++.+....... ....++|++|++++|......+ +..+++|+.|++.++ .
T Consensus 192 ---------~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n-~ 254 (347)
T 4fmz_A 192 ---------ISPLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTN-Q 254 (347)
T ss_dssp ---------CGGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSS-C
T ss_pred ---------cccccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCC-c
Confidence 2237888999999999888777655 2233489999999986544433 788999999999988 6
Q ss_pred cceeeccchhhhhhhhhccccEEEEecCCCCCCCccccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccc
Q 046723 404 LEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQ 483 (562)
Q Consensus 404 l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~ 483 (562)
+..++ ... .+++|++|++++| .++.++.+..+++|++|++++|......+. .+..+++|+
T Consensus 255 l~~~~-~~~------~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~l~~l~~L~ 314 (347)
T 4fmz_A 255 ISDIN-AVK------DLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDME------------VIGGLTNLT 314 (347)
T ss_dssp CCCCG-GGT------TCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHH------------HHHTCTTCS
T ss_pred cCCCh-hHh------cCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChh------------HhhccccCC
Confidence 66542 222 3899999999999 788888899999999999999864333222 345689999
Q ss_pred eeeccCCcCCcccCcCCCCCCCcceeeeccCC
Q 046723 484 NLEVAGARNLKSIYWKPLPFPHLKAMSFLHCK 515 (562)
Q Consensus 484 ~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~C~ 515 (562)
.|++++|+ +..++. ...+++|++|++.+|+
T Consensus 315 ~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 315 TLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp EEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred EEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 99999986 555544 5568999999999985
No 3
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.3e-23 Score=218.55 Aligned_cols=266 Identities=18% Similarity=0.256 Sum_probs=150.8
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcc
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTK 244 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 244 (562)
+.+...+..+...+.+..+++++.|++++|.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++|.++.
T Consensus 49 ~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 126 (466)
T 1o6v_A 49 TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD 126 (466)
T ss_dssp CEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred cEEecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC
Confidence 44555555666667777788888888888888887778888888888888888887766 7888888888888888887
Q ss_pred cCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhccccc-c
Q 046723 245 LPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASEN-S 323 (562)
Q Consensus 245 lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~ 323 (562)
++. +.++++|++|++++|.+..++ .++.+++|++|++.+ .+..++. +.++++|++|++++|........... .
T Consensus 127 ~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~ 200 (466)
T 1o6v_A 127 IDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTN 200 (466)
T ss_dssp CGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred ChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCCCChhhccCCC
Confidence 765 788888888888888777765 355666666666542 2333332 45555666666655544321100000 0
Q ss_pred ---cccC-CcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeec
Q 046723 324 ---ILFG-GGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIA 399 (562)
Q Consensus 324 ---~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 399 (562)
.... ........++.+++|+.|+++.+....++.+ ..+++|+.|++++|......+ +..+++|+.|++.
T Consensus 201 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l----~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 201 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLG 273 (466)
T ss_dssp CSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGG----GGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECC
T ss_pred CCEEEecCCcccccccccccCCCCEEECCCCCcccchhh----hcCCCCCEEECCCCccccchh---hhcCCCCCEEECC
Confidence 0000 0000111134445555555555444443221 112255555555544322222 4445555555555
Q ss_pred cccccceeeccchhhhhhhhhccccEEEEecCCCCCCCccccccCCCceEEEecC
Q 046723 400 NSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLTFLVFAPNLKSIKVGIC 454 (562)
Q Consensus 400 ~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c 454 (562)
++ .+..++. .. .+++|+.|++++| .++.++.+..+++|+.|++++|
T Consensus 274 ~n-~l~~~~~-~~------~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 274 AN-QISNISP-LA------GLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN 319 (466)
T ss_dssp SS-CCCCCGG-GT------TCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS
T ss_pred CC-ccCcccc-cc------CCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCC
Confidence 54 3333222 11 2455555555555 4444444555555555555554
No 4
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=6e-24 Score=215.96 Aligned_cols=287 Identities=15% Similarity=0.197 Sum_probs=178.8
Q ss_pred cccccceEEeccccccccCCC--CCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccC-cccCCcccCcE
Q 046723 181 RGWEKARRLSLMQNQIRNLSE--IPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP-VGISELVSLQH 257 (562)
Q Consensus 181 ~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~ 257 (562)
..+.+++.+++.++.++.++. +..+++|++|+++++.++.+++..+..+++|++|++++|.++.+| ..++++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 345788889999888888875 577888999999998888888777888999999999999888774 45788899999
Q ss_pred EeCCCCCccccchhh-hCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhh
Q 046723 258 LDLSESDIEELPGEL-KALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEEL 336 (562)
Q Consensus 258 L~l~~~~l~~lp~~~-~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (562)
|++++|.++.+|..+ +++++|++|++++| .+..++...+.++++|++|++.+|..... .+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------~~ 182 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV------------------DL 182 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC------------------CG
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc------------------cc
Confidence 999999888888764 78899999999987 56666655578889999999988876531 23
Q ss_pred cCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhh
Q 046723 337 LGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQ 416 (562)
Q Consensus 337 ~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 416 (562)
..+++|+.|+++.+....+. .+.+|+.|+++++..... + ....++|+.|++.++ .+...+ ..
T Consensus 183 ~~l~~L~~L~l~~n~l~~~~-------~~~~L~~L~l~~n~l~~~-~---~~~~~~L~~L~l~~n-~l~~~~-~l----- 244 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLLSTLA-------IPIAVEELDASHNSINVV-R---GPVNVELTILKLQHN-NLTDTA-WL----- 244 (390)
T ss_dssp GGCTTCSEEECCSSCCSEEE-------CCSSCSEEECCSSCCCEE-E---CCCCSSCCEEECCSS-CCCCCG-GG-----
T ss_pred ccccccceeecccccccccC-------CCCcceEEECCCCeeeec-c---ccccccccEEECCCC-CCcccH-HH-----
Confidence 44555666655554443321 112555555555432211 1 122345555555554 333221 11
Q ss_pred hhhhccccEEEEecCCCCCCC--ccccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCcCCc
Q 046723 417 QFAFRSLNMVEICNCIKLKDL--TFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLK 494 (562)
Q Consensus 417 ~~~~~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 494 (562)
..+++|+.|+++++ .++.. ..+..+++|++|+++++. ++.++. ....+++|+.|+++++ .+.
T Consensus 245 -~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------~~~~l~~L~~L~L~~n-~l~ 308 (390)
T 3o6n_A 245 -LNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVALNL------------YGQPIPTLKVLDLSHN-HLL 308 (390)
T ss_dssp -GGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSSC-CCEEEC------------SSSCCTTCCEEECCSS-CCC
T ss_pred -cCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCCc-CcccCc------------ccCCCCCCCEEECCCC-cce
Confidence 12455555555555 33332 234455555555555542 222221 2234555555555554 344
Q ss_pred ccCcCCCCCCCcceeeeccCCCCcccc
Q 046723 495 SIYWKPLPFPHLKAMSFLHCKKLKKLP 521 (562)
Q Consensus 495 ~~~~~~~~~~~L~~L~i~~C~~L~~lp 521 (562)
.++.....+++|++|++.+|+ ++.+|
T Consensus 309 ~~~~~~~~l~~L~~L~L~~N~-i~~~~ 334 (390)
T 3o6n_A 309 HVERNQPQFDRLENLYLDHNS-IVTLK 334 (390)
T ss_dssp CCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred ecCccccccCcCCEEECCCCc-cceeC
Confidence 444333345555555555543 44444
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=3.6e-23 Score=216.08 Aligned_cols=310 Identities=22% Similarity=0.261 Sum_probs=209.9
Q ss_pred EEEeeccccccCCCccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCc
Q 046723 166 FFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELT 243 (562)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 243 (562)
.+...+..+..+|.. -..+++.|++++|.+..++ .+..+++|++|++++|.++.+.+..|..+++|++|++++|.++
T Consensus 15 ~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 15 AVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp EEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 344445555555542 2357888888888888763 5778888888888888888887667888888888888888888
Q ss_pred ccCcc-cCCcccCcEEeCCCCCcccc-chhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccc
Q 046723 244 KLPVG-ISELVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASE 321 (562)
Q Consensus 244 ~lp~~-~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 321 (562)
.+|.. +.++++|++|++++|.+..+ |..+..+++|++|++++| .+..++...+.++++|++|++.+|....
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~------ 166 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTS------ 166 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSS------
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCcc------
Confidence 88654 67888888888888888755 456788888888888887 5555555447888888888888886653
Q ss_pred cccccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccc
Q 046723 322 NSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANS 401 (562)
Q Consensus 322 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 401 (562)
.....+..+++|+.|++..+....+.. .......+|+.|+++++......+.. .....+|+.|++.++
T Consensus 167 ---------~~~~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n 234 (477)
T 2id5_A 167 ---------IPTEALSHLHGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWPYLDTMTPN-CLYGLNLTSLSITHC 234 (477)
T ss_dssp ---------CCHHHHTTCTTCCEEEEESCCCCEECT--TCSCSCTTCCEEEEECCTTCCEECTT-TTTTCCCSEEEEESS
T ss_pred ---------cChhHhcccCCCcEEeCCCCcCcEeCh--hhcccCcccceeeCCCCccccccCcc-cccCccccEEECcCC
Confidence 123457778888888888776655432 11122347778888777665555432 223347888888776
Q ss_pred cccceeeccchhhhhhhhhccccEEEEecCCCCCCCc--cccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCc
Q 046723 402 VILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLT--FLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPF 479 (562)
Q Consensus 402 ~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~ 479 (562)
.+..++..... .+++|+.|+|+++ .++.++ .+..+++|++|+|+++. +..++. .....+
T Consensus 235 -~l~~~~~~~~~-----~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-----------~~~~~l 295 (477)
T 2id5_A 235 -NLTAVPYLAVR-----HLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQ-LAVVEP-----------YAFRGL 295 (477)
T ss_dssp -CCCSCCHHHHT-----TCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSC-CSEECT-----------TTBTTC
T ss_pred -cccccCHHHhc-----CccccCeeECCCC-cCCccChhhccccccCCEEECCCCc-cceECH-----------HHhcCc
Confidence 55555533222 2677888888877 455533 36677888888887754 333321 234567
Q ss_pred cccceeeccCCcCCcccCcC-CCCCCCcceeeeccCC
Q 046723 480 EKLQNLEVAGARNLKSIYWK-PLPFPHLKAMSFLHCK 515 (562)
Q Consensus 480 ~~L~~L~l~~c~~L~~~~~~-~~~~~~L~~L~i~~C~ 515 (562)
++|+.|+++++ .+..++.. ...+++|++|++.+++
T Consensus 296 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 296 NYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 78888888876 45555543 2456778888777654
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1e-23 Score=227.16 Aligned_cols=107 Identities=25% Similarity=0.388 Sum_probs=66.8
Q ss_pred ccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccC-cccCCcccCc
Q 046723 180 VRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP-VGISELVSLQ 256 (562)
Q Consensus 180 ~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~ 256 (562)
+..++++++|++++|.+..++ .+..+++|++|++++|.++.+++..|+.+++|++|++++|.++.++ ..++++++|+
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 131 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCC
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCC
Confidence 555666666666666665552 3556666666666666666665555666666666666666666554 4566666666
Q ss_pred EEeCCCCCcc--ccchhhhCCCCCcEEeccCc
Q 046723 257 HLDLSESDIE--ELPGELKALVNLKCLDLEYT 286 (562)
Q Consensus 257 ~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~ 286 (562)
+|++++|.+. .+|..++++++|++|++++|
T Consensus 132 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp EEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred EEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 6666666665 35666666666666666665
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=3.2e-23 Score=215.14 Aligned_cols=348 Identities=16% Similarity=0.168 Sum_probs=220.8
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccC--CCCCCCccccEEEccccCcc-ccchhhhcCCCCCcEEEecCCC
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNL--SEIPTCPHLLTLFLNENNLR-KIHNDFFQFMPSLKVLNLSHCE 241 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l--~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~ 241 (562)
..+...+.++...|.+ .+++++|++++|.+..+ ..+..+++|++|++++|.+. .+++..|..+++|++|++++|.
T Consensus 13 ~~~~c~~~~l~~lp~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 13 YNAICINRGLHQVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp TEEECCSSCCSSCCCC--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cccCcCCCCcccCCCC--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 4455666667777763 37899999999999886 35889999999999999886 6666778999999999999999
Q ss_pred Cccc-CcccCCcccCcEEeCCCCCccc-cchh--hhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchh
Q 046723 242 LTKL-PVGISELVSLQHLDLSESDIEE-LPGE--LKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIK 317 (562)
Q Consensus 242 ~~~l-p~~~~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 317 (562)
++.+ |..++++++|++|++++|.++. .|.. ++.+++|++|++++|......|...+.++++|++|++.+|......
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 9876 7889999999999999999884 4544 8899999999999985433346555789999999999999765431
Q ss_pred ccccccc--------ccCC-----------cccchhhhcCccccceeeEEEecccch-HHHHhhhhhhccccceeecccc
Q 046723 318 EASENSI--------LFGG-----------GELIVEELLGLKHLEVISLTLRNSHGL-QSFLRSWKLRRCTRALLLQCFN 377 (562)
Q Consensus 318 ~~~~~~~--------~~~~-----------~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~ 377 (562)
....... .... .......+..+++|+.|+++.+...+. +..........+|+.|.++++.
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 1110000 0000 000011233456788888877665432 1111111112366677766553
Q ss_pred CCCcc---------chhhhh--hhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCC-c-cccccC
Q 046723 378 DSTLL---------EVSALA--YLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDL-T-FLVFAP 444 (562)
Q Consensus 378 ~~~~~---------~~~~l~--~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l-~-~l~~l~ 444 (562)
..... ....+. ..++|+.|++.++ .+......... .+++|+.|+++++ .+... + .+..++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~-----~l~~L~~L~Ls~n-~l~~~~~~~~~~l~ 323 (455)
T 3v47_A 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS-KIFALLKSVFS-----HFTDLEQLTLAQN-EINKIDDNAFWGLT 323 (455)
T ss_dssp TTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS-CCCEECTTTTT-----TCTTCCEEECTTS-CCCEECTTTTTTCT
T ss_pred ccccccchhhhccCcccccccccccCceEEEecCc-cccccchhhcc-----cCCCCCEEECCCC-cccccChhHhcCcc
Confidence 22110 000111 1256777777766 44443332222 2677777777777 44443 2 466777
Q ss_pred CCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCcCCccc-CcCCCCCCCcceeeeccCCCCccccCC
Q 046723 445 NLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKSI-YWKPLPFPHLKAMSFLHCKKLKKLPLD 523 (562)
Q Consensus 445 ~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~-~~~~~~~~~L~~L~i~~C~~L~~lp~~ 523 (562)
+|++|++++|. +..++. ..+..+++|+.|+++++. +..+ +.....+++|++|++.+| +++.+|..
T Consensus 324 ~L~~L~Ls~N~-l~~~~~-----------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 389 (455)
T 3v47_A 324 HLLKLNLSQNF-LGSIDS-----------RMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTN-QLKSVPDG 389 (455)
T ss_dssp TCCEEECCSSC-CCEECG-----------GGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred cCCEEECCCCc-cCCcCh-----------hHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCC-ccccCCHh
Confidence 77777777764 233321 134567777777777763 4443 344556777777777775 56666655
Q ss_pred CccccccceEEE
Q 046723 524 SNSAKERKIVIS 535 (562)
Q Consensus 524 ~~~~~~~~~~i~ 535 (562)
.......+..+.
T Consensus 390 ~~~~l~~L~~L~ 401 (455)
T 3v47_A 390 IFDRLTSLQKIW 401 (455)
T ss_dssp TTTTCTTCCEEE
T ss_pred HhccCCcccEEE
Confidence 433333444433
No 8
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=5.3e-23 Score=213.92 Aligned_cols=302 Identities=17% Similarity=0.243 Sum_probs=210.5
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcc
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTK 244 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 244 (562)
+.+.+.+..+...+.+..+.+++.|++.+|.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++|.+..
T Consensus 71 ~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 148 (466)
T 1o6v_A 71 TQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD 148 (466)
T ss_dssp CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC
T ss_pred CEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC
Confidence 44555555555555567777888888888887777667778888888888887777765 6778888888888776665
Q ss_pred cCc--------------------ccCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCC
Q 046723 245 LPV--------------------GISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQ 304 (562)
Q Consensus 245 lp~--------------------~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~ 304 (562)
++. .+.++++|++|++++|.+..++ .+..+++|++|++++| .+..++. ++.+++|+
T Consensus 149 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~ 224 (466)
T 1o6v_A 149 ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNN-QISDITP--LGILTNLD 224 (466)
T ss_dssp CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGGCTTCC
T ss_pred ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCC-ccccccc--ccccCCCC
Confidence 542 1344555555555555555443 3455555555555555 3333333 44555566
Q ss_pred EEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccch
Q 046723 305 VLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEV 384 (562)
Q Consensus 305 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 384 (562)
+|++.+|... ....+..+++|+.|+++.+....... ...+++|+.|+++++......+
T Consensus 225 ~L~l~~n~l~-----------------~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~- 282 (466)
T 1o6v_A 225 ELSLNGNQLK-----------------DIGTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNISP- 282 (466)
T ss_dssp EEECCSSCCC-----------------CCGGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCCCGG-
T ss_pred EEECCCCCcc-----------------cchhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCccCcccc-
Confidence 6666555443 23467888999999999988877665 2234489999999876544433
Q ss_pred hhhhhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCCccccccCCCceEEEecCcchhhhhcCC
Q 046723 385 SALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLTFLVFAPNLKSIKVGICHAMEEIASEG 464 (562)
Q Consensus 385 ~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~ 464 (562)
+..+++|+.|++.++ .+..++. . ..+++|+.|++++| .+...+.+..+++|++|++++|. +..++
T Consensus 283 --~~~l~~L~~L~L~~n-~l~~~~~-~------~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~--- 347 (466)
T 1o6v_A 283 --LAGLTALTNLELNEN-QLEDISP-I------SNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNNK-VSDVS--- 347 (466)
T ss_dssp --GTTCTTCSEEECCSS-CCSCCGG-G------GGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSSC-CCCCG---
T ss_pred --ccCCCccCeEEcCCC-cccCchh-h------cCCCCCCEEECcCC-cCCCchhhccCccCCEeECCCCc-cCCch---
Confidence 778899999999988 5655543 2 23899999999999 67777778999999999999974 44432
Q ss_pred CCCCccccccCCCCccccceeeccCCcCCcccCcCCCCCCCcceeeeccCCCCccccC
Q 046723 465 KFAEVPEVMANLNPFEKLQNLEVAGARNLKSIYWKPLPFPHLKAMSFLHCKKLKKLPL 522 (562)
Q Consensus 465 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~C~~L~~lp~ 522 (562)
.+..+++|+.|++++|. +..+.. ...+++|+.|++.+|+ +..+|.
T Consensus 348 ----------~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-~~~~p~ 392 (466)
T 1o6v_A 348 ----------SLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA-WTNAPV 392 (466)
T ss_dssp ----------GGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEE-EECCCB
T ss_pred ----------hhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCc-ccCCch
Confidence 45679999999999985 444433 5678999999999984 444443
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=4.2e-23 Score=219.65 Aligned_cols=143 Identities=24% Similarity=0.326 Sum_probs=113.4
Q ss_pred cccccCCCccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcc-
Q 046723 172 VGLVRAPDVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVG- 248 (562)
Q Consensus 172 ~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~- 248 (562)
..+..+|.. -.+++++|++++|.++.++ .+..+++|++|++++|.++.+++..|..+++|++|++++|.++.+|..
T Consensus 15 ~~l~~ip~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 15 RSFTSIPSG-LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp SCCSSCCSC-CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred Ccccccccc-CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH
Confidence 344444442 2368889999998888763 578888999999999988888877788889999999999988877665
Q ss_pred cCCcccCcEEeCCCCCccc--cchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccc
Q 046723 249 ISELVSLQHLDLSESDIEE--LPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKA 315 (562)
Q Consensus 249 ~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~ 315 (562)
++++++|++|++++|.++. .|..++++++|++|++++|..+..+|...+.++++|++|++.+|....
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 8888999999999988874 466788889999999988866777776557888889999988887653
No 10
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=8.4e-23 Score=215.75 Aligned_cols=142 Identities=26% Similarity=0.349 Sum_probs=115.4
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCC
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCEL 242 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 242 (562)
+.+...+..+..+|.... +++++|++++|.+..++ .+..+++|++|++++|.++.+++..|..+++|++|++++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 445556666666665332 78999999999998875 578999999999999999998777799999999999999999
Q ss_pred cccCcccCCcccCcEEeCCCCCccc--cchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCC--CEEEecCCCc
Q 046723 243 TKLPVGISELVSLQHLDLSESDIEE--LPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRL--QVLRMFGASH 313 (562)
Q Consensus 243 ~~lp~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L--~~L~l~~~~~ 313 (562)
+.+|.. .+++|++|++++|.++. +|..++++++|++|++++|. +... .+..+++| ++|++.+|..
T Consensus 82 ~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 82 VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred eecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEEEeecccc
Confidence 999877 89999999999999885 57889999999999999874 4331 25566666 8888777655
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=5.3e-23 Score=214.83 Aligned_cols=295 Identities=18% Similarity=0.240 Sum_probs=169.5
Q ss_pred EEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCccc-CcccCCcccCcEEeCCCCCcc
Q 046723 188 RLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKL-PVGISELVSLQHLDLSESDIE 266 (562)
Q Consensus 188 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~ 266 (562)
.++..++.++.+|.- -.+++++|++++|.++.+++..|..+++|++|++++|.++.+ |..+.++++|++|++++|.++
T Consensus 15 ~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 15 AVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp EEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 444555555555431 234667777777776666655566677777777777766655 556666777777777777666
Q ss_pred ccchh-hhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCcccccee
Q 046723 267 ELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVI 345 (562)
Q Consensus 267 ~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 345 (562)
.+|.. +.++++|++|++++| .+..++...+.++++|++|++.+|.... .....+..+++|+.|
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVY---------------ISHRAFSGLNSLEQL 157 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCE---------------ECTTSSTTCTTCCEE
T ss_pred ccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCccce---------------eChhhccCCCCCCEE
Confidence 66653 466677777777766 3444443336667777777776665442 123345566667777
Q ss_pred eEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccccE
Q 046723 346 SLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNM 425 (562)
Q Consensus 346 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~ 425 (562)
+++.+....++.. .....++|+.|+++++.... .+...+..+++|+.|++.++..+..++..... ..+|++
T Consensus 158 ~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~ 228 (477)
T 2id5_A 158 TLEKCNLTSIPTE--ALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY------GLNLTS 228 (477)
T ss_dssp EEESCCCSSCCHH--HHTTCTTCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTT------TCCCSE
T ss_pred ECCCCcCcccChh--HhcccCCCcEEeCCCCcCcE-eChhhcccCcccceeeCCCCccccccCccccc------CccccE
Confidence 7766665544321 11122366667766654322 22223556666777777666555555544433 346777
Q ss_pred EEEecCCCCCCCc--cccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCcCCccc-CcCCCC
Q 046723 426 VEICNCIKLKDLT--FLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKSI-YWKPLP 502 (562)
Q Consensus 426 L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~-~~~~~~ 502 (562)
|++++| .++.++ .+..+++|++|+|+++. ++.++. ..+..+++|+.|+++++. +..+ +.....
T Consensus 229 L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-----------~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 294 (477)
T 2id5_A 229 LSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG-----------SMLHELLRLQEIQLVGGQ-LAVVEPYAFRG 294 (477)
T ss_dssp EEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECT-----------TSCTTCTTCCEEECCSSC-CSEECTTTBTT
T ss_pred EECcCC-cccccCHHHhcCccccCeeECCCCc-CCccCh-----------hhccccccCCEEECCCCc-cceECHHHhcC
Confidence 777766 455554 35666777777776654 333321 134456667777776653 3333 233345
Q ss_pred CCCcceeeeccCCCCccccCC
Q 046723 503 FPHLKAMSFLHCKKLKKLPLD 523 (562)
Q Consensus 503 ~~~L~~L~i~~C~~L~~lp~~ 523 (562)
+++|++|++++| +++.+|..
T Consensus 295 l~~L~~L~L~~N-~l~~~~~~ 314 (477)
T 2id5_A 295 LNYLRVLNVSGN-QLTTLEES 314 (477)
T ss_dssp CTTCCEEECCSS-CCSCCCGG
T ss_pred cccCCEEECCCC-cCceeCHh
Confidence 666777777665 55555543
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.1e-23 Score=231.28 Aligned_cols=310 Identities=14% Similarity=0.154 Sum_probs=186.4
Q ss_pred ccccccceEEecccccccc------------------CCC-CC--CCccccEEEccccCccccchhhhcCCCCCcEEEec
Q 046723 180 VRGWEKARRLSLMQNQIRN------------------LSE-IP--TCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLS 238 (562)
Q Consensus 180 ~~~~~~l~~L~l~~~~~~~------------------l~~-~~--~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 238 (562)
+..+++++.|++++|.+.. +|. +. .+++|++|++++|.+....+..+..+++|++|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 5666777888888777776 543 34 67778888887776554444457777788888887
Q ss_pred CCC-Ccc--cCcccCCcc-------cCcEEeCCCCCccccch--hhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEE
Q 046723 239 HCE-LTK--LPVGISELV-------SLQHLDLSESDIEELPG--ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVL 306 (562)
Q Consensus 239 ~~~-~~~--lp~~~~~l~-------~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L 306 (562)
+|+ ++. +|..++++. +|++|++++|.+..+|. .++++++|++|++++| .+..+| . ++++++|++|
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-~~~L~~L~~L 600 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-FGTNVKLTDL 600 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-CCTTSEESEE
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-h-hcCCCcceEE
Confidence 776 664 666665554 77777777777777777 7777777777777776 445677 3 6777777777
Q ss_pred EecCCCccchhcccccccccCCcccchhhhcCccc-cceeeEEEecccchHHHHhhh-----------------------
Q 046723 307 RMFGASHKAIKEASENSILFGGGELIVEELLGLKH-LEVISLTLRNSHGLQSFLRSW----------------------- 362 (562)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~l~~~~----------------------- 362 (562)
++++|.+.. .+..+..+++ |+.|+++.+....++......
T Consensus 601 ~Ls~N~l~~----------------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~ 664 (876)
T 4ecn_A 601 KLDYNQIEE----------------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664 (876)
T ss_dssp ECCSSCCSC----------------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS
T ss_pred ECcCCcccc----------------chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccch
Confidence 777776543 2222333333 444443333333222111100
Q ss_pred ---h--hhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhh--hhhhccccEEEEecCCCCC
Q 046723 363 ---K--LRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQ--QFAFRSLNMVEICNCIKLK 435 (562)
Q Consensus 363 ---~--~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~--~~~~~~L~~L~L~~c~~l~ 435 (562)
. ...+|+.|++++|... ..+...+..+++|+.|+++++ .+..++........ ...+++|+.|+|++| .++
T Consensus 665 ~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~ 741 (876)
T 4ecn_A 665 CSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLT 741 (876)
T ss_dssp SCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCC
T ss_pred hhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCc
Confidence 0 0114566666655433 333222345677777777766 55555544332110 012347888888877 555
Q ss_pred CCcc-cc--ccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCc------CCcccCcCCCCCCCc
Q 046723 436 DLTF-LV--FAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGAR------NLKSIYWKPLPFPHL 506 (562)
Q Consensus 436 ~l~~-l~--~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~------~L~~~~~~~~~~~~L 506 (562)
.+|. +. .+++|+.|+|++|. +..+|. .+..+++|+.|+|++++ -...++.....+++|
T Consensus 742 ~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~------------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 742 SLSDDFRATTLPYLSNMDVSYNC-FSSFPT------------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808 (876)
T ss_dssp CCCGGGSTTTCTTCCEEECCSSC-CSSCCC------------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred cchHHhhhccCCCcCEEEeCCCC-CCccch------------hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCC
Confidence 6543 44 67888888887754 333432 34567778888876632 233455555567788
Q ss_pred ceeeeccCCCCccccCCCc
Q 046723 507 KAMSFLHCKKLKKLPLDSN 525 (562)
Q Consensus 507 ~~L~i~~C~~L~~lp~~~~ 525 (562)
+.|++++|.- ..+|....
T Consensus 809 ~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 809 IQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp CEEECCSSCC-CBCCSCCC
T ss_pred CEEECCCCCC-CccCHhhc
Confidence 8888888744 77777644
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=7e-24 Score=228.72 Aligned_cols=327 Identities=12% Similarity=0.108 Sum_probs=168.1
Q ss_pred ccccccceEEecccccccc------------------CC-CCC--CCccccEEEccccCccccchhhhcCCCCCcEEEec
Q 046723 180 VRGWEKARRLSLMQNQIRN------------------LS-EIP--TCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLS 238 (562)
Q Consensus 180 ~~~~~~l~~L~l~~~~~~~------------------l~-~~~--~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 238 (562)
+..+++++.|++++|.+.. +| .+. ++++|++|++++|.+....+..++.+++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 4555666666666666665 44 244 56666666666666554333446666666666666
Q ss_pred CCC-Ccc--cCcccCCc------ccCcEEeCCCCCccccch--hhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEE
Q 046723 239 HCE-LTK--LPVGISEL------VSLQHLDLSESDIEELPG--ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLR 307 (562)
Q Consensus 239 ~~~-~~~--lp~~~~~l------~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~ 307 (562)
+|+ ++. +|..++++ ++|++|++++|.++.+|. .++++++|++|++++|.....+| . ++++++|++|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEE
Confidence 665 553 56655554 666666666666666666 56666666666666653222555 2 55666666666
Q ss_pred ecCCCccchhcccccc------cccCC--cccchhhhcCc--cccceeeEEEecccchH-HHHh----hhhhhcccccee
Q 046723 308 MFGASHKAIKEASENS------ILFGG--GELIVEELLGL--KHLEVISLTLRNSHGLQ-SFLR----SWKLRRCTRALL 372 (562)
Q Consensus 308 l~~~~~~~~~~~~~~~------~~~~~--~~~~~~~l~~l--~~L~~L~l~~~~~~~~~-~l~~----~~~~~~~L~~L~ 372 (562)
+.+|....+....... ..... -...+..+..+ ++|+.|+++.+...+.. ..+. ..-...+|+.|+
T Consensus 360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439 (636)
T ss_dssp CCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred CCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence 6665443210000000 00000 00111222222 24445544444433210 0000 000112566666
Q ss_pred eccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhh--hhhhccccEEEEecCCCCCCCcc-cc--ccCCCc
Q 046723 373 LQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQ--QFAFRSLNMVEICNCIKLKDLTF-LV--FAPNLK 447 (562)
Q Consensus 373 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~--~~~~~~L~~L~L~~c~~l~~l~~-l~--~l~~L~ 447 (562)
++++... ..+...+..+++|+.|+++++ .+..++........ ...+++|+.|+++++ .++.++. +. .+++|+
T Consensus 440 Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~ 516 (636)
T 4eco_A 440 LSNNQIS-KFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLV 516 (636)
T ss_dssp CCSSCCC-SCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCC
T ss_pred CcCCccC-cCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcC
Confidence 6654433 333222445667777777666 44455544322100 011226777777777 4555443 43 677777
Q ss_pred eEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCC------cCCcccCcCCCCCCCcceeeeccCCCCcccc
Q 046723 448 SIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGA------RNLKSIYWKPLPFPHLKAMSFLHCKKLKKLP 521 (562)
Q Consensus 448 ~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c------~~L~~~~~~~~~~~~L~~L~i~~C~~L~~lp 521 (562)
+|+|+++. ++.+|. .+..+++|+.|+++++ .-...++.....+++|++|++++|.- ..+|
T Consensus 517 ~L~Ls~N~-l~~ip~------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip 582 (636)
T 4eco_A 517 GIDLSYNS-FSKFPT------------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN 582 (636)
T ss_dssp EEECCSSC-CSSCCC------------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred EEECCCCC-CCCcCh------------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence 77777754 333432 3445677777777442 22334454555667777777777643 7777
Q ss_pred CCCc
Q 046723 522 LDSN 525 (562)
Q Consensus 522 ~~~~ 525 (562)
....
T Consensus 583 ~~~~ 586 (636)
T 4eco_A 583 EKIT 586 (636)
T ss_dssp SCCC
T ss_pred HhHh
Confidence 6544
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=4.2e-23 Score=220.70 Aligned_cols=343 Identities=17% Similarity=0.131 Sum_probs=178.9
Q ss_pred CccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCc-ccCCcccC
Q 046723 179 DVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPV-GISELVSL 255 (562)
Q Consensus 179 ~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L 255 (562)
.+..++++++|++++|.+..++ .+..+++|++|++++|.++.+++..|..+++|++|++++|.++.+|. .++++++|
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 3555566666666666665553 25566666666666666666655556666666666666666665543 46666666
Q ss_pred cEEeCCCCCccc--cchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCC----CEEEecCCCccchhcccccc-----c
Q 046723 256 QHLDLSESDIEE--LPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRL----QVLRMFGASHKAIKEASENS-----I 324 (562)
Q Consensus 256 ~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L----~~L~l~~~~~~~~~~~~~~~-----~ 324 (562)
++|++++|.+.. +|..++++++|++|++++| .+..++...++.+++| +.|++.+|............ .
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L 205 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeE
Confidence 666666666653 4666666666666666665 3444433324444444 44555444332211000000 0
Q ss_pred c---------------------------------------c----------------------CCcccchhhhcCccccc
Q 046723 325 L---------------------------------------F----------------------GGGELIVEELLGLKHLE 343 (562)
Q Consensus 325 ~---------------------------------------~----------------------~~~~~~~~~l~~l~~L~ 343 (562)
. . ......+..+..+++|+
T Consensus 206 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~ 285 (570)
T 2z63_A 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285 (570)
T ss_dssp EEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCS
T ss_pred ecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCccc
Confidence 0 0 00001122334445555
Q ss_pred eeeEEEecccchHHHHhh---------------------------------------hhhhccccceeeccccCCCccc-
Q 046723 344 VISLTLRNSHGLQSFLRS---------------------------------------WKLRRCTRALLLQCFNDSTLLE- 383 (562)
Q Consensus 344 ~L~l~~~~~~~~~~l~~~---------------------------------------~~~~~~L~~L~l~~~~~~~~~~- 383 (562)
.|+++.+....++..... ....++|+.|+++++.......
T Consensus 286 ~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 365 (570)
T 2z63_A 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365 (570)
T ss_dssp EEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEE
T ss_pred EEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccc
Confidence 555554433322211000 0122367777776654332210
Q ss_pred hhhhhhhcccCeeeeccccccceeeccchhh----------------h---hhhhhccccEEEEecCCCCCC-Cc-cccc
Q 046723 384 VSALAYLKQLNRLQIANSVILEELKMDYAEE----------------V---QQFAFRSLNMVEICNCIKLKD-LT-FLVF 442 (562)
Q Consensus 384 ~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~----------------~---~~~~~~~L~~L~L~~c~~l~~-l~-~l~~ 442 (562)
...+..+++|+.|++.++ .+..++..+... . ....+++|++|++++|. +.. .+ .+..
T Consensus 366 ~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 443 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNG 443 (570)
T ss_dssp EHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC-CEECCTTTTTT
T ss_pred cccccccCccCEEECCCC-ccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc-ccccchhhhhc
Confidence 123566777777777766 344443332220 0 00124555555555552 222 21 2455
Q ss_pred cCCCceEEEecCcchh-hhhcCCCCCCccccccCCCCccccceeeccCCcCCccc-CcCCCCCCCcceeeeccCCCCccc
Q 046723 443 APNLKSIKVGICHAME-EIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKSI-YWKPLPFPHLKAMSFLHCKKLKKL 520 (562)
Q Consensus 443 l~~L~~L~L~~c~~l~-~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~-~~~~~~~~~L~~L~i~~C~~L~~l 520 (562)
+++|++|++++|.... .+| .....+++|+.|++++|. +..+ +.....+++|++|++++| +++.+
T Consensus 444 l~~L~~L~l~~n~l~~~~~p------------~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~ 509 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENFLP------------DIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSV 509 (570)
T ss_dssp CTTCCEEECTTCEEGGGEEC------------SCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred CCcCcEEECcCCcCccccch------------hhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCCCC
Confidence 6666666666654321 121 356678899999999885 4444 555667899999999998 67777
Q ss_pred cCCCccccccceEEEehh
Q 046723 521 PLDSNSAKERKIVISGER 538 (562)
Q Consensus 521 p~~~~~~~~~~~~i~~~~ 538 (562)
|.........+..+.-..
T Consensus 510 ~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 510 PDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp CTTTTTTCTTCCEEECCS
T ss_pred CHHHhhcccCCcEEEecC
Confidence 765433334555554443
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.3e-23 Score=222.08 Aligned_cols=279 Identities=20% Similarity=0.247 Sum_probs=156.0
Q ss_pred ccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcc-cCCcccCcEE
Q 046723 182 GWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVG-ISELVSLQHL 258 (562)
Q Consensus 182 ~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L 258 (562)
.+++++.|++.+|.+..++ .+..+++|++|++++|.++.+++..|+.+++|++|++++|.++.+|.. ++++++|++|
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 3344455555554444432 344445555555555544444444444455555555555544444433 2444555555
Q ss_pred eCCCCCccccch-hhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhc
Q 046723 259 DLSESDIEELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELL 337 (562)
Q Consensus 259 ~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (562)
++++|.+..+++ .++.+++|++|++++| .+..++ ++.+++|++|++.+|... .+.
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~l~~n~l~--------------------~l~ 208 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLLS--------------------TLA 208 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGCTTCSEEECCSSCCS--------------------EEE
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhhhhhhhhhcccCccc--------------------ccc
Confidence 555554443332 3444455555555544 333333 233444445544444322 233
Q ss_pred CccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhh
Q 046723 338 GLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQ 417 (562)
Q Consensus 338 ~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 417 (562)
...+|+.|+++.+....++.. ...+|+.|+++++..... ..+..+++|+.|+++++ .+..+......
T Consensus 209 ~~~~L~~L~ls~n~l~~~~~~-----~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~---- 275 (597)
T 3oja_B 209 IPIAVEELDASHNSINVVRGP-----VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYN-ELEKIMYHPFV---- 275 (597)
T ss_dssp CCTTCSEEECCSSCCCEEECS-----CCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSS-CCCEEESGGGT----
T ss_pred CCchhheeeccCCcccccccc-----cCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCC-ccCCCCHHHhc----
Confidence 445667777766665544321 123788888887654432 24777888888888877 55554333222
Q ss_pred hhhccccEEEEecCCCCCCCcc-ccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCcCCccc
Q 046723 418 FAFRSLNMVEICNCIKLKDLTF-LVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKSI 496 (562)
Q Consensus 418 ~~~~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 496 (562)
.+++|+.|+|++| .++.++. ...+|+|++|+|++|. +..+|. .+..+++|+.|++++|. +..+
T Consensus 276 -~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~------------~~~~l~~L~~L~L~~N~-l~~~ 339 (597)
T 3oja_B 276 -KMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVER------------NQPQFDRLENLYLDHNS-IVTL 339 (597)
T ss_dssp -TCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGG------------GHHHHTTCSEEECCSSC-CCCC
T ss_pred -CccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCc------------ccccCCCCCEEECCCCC-CCCc
Confidence 2788888888888 5666544 4568888888888865 344443 34567888888888864 4444
Q ss_pred CcCCCCCCCcceeeeccCC
Q 046723 497 YWKPLPFPHLKAMSFLHCK 515 (562)
Q Consensus 497 ~~~~~~~~~L~~L~i~~C~ 515 (562)
+ ...+++|+.|++.+++
T Consensus 340 ~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 340 K--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp C--CCTTCCCSEEECCSSC
T ss_pred C--hhhcCCCCEEEeeCCC
Confidence 3 4567888888888765
No 16
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=5.2e-23 Score=212.55 Aligned_cols=294 Identities=17% Similarity=0.170 Sum_probs=165.0
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcc
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTK 244 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 244 (562)
+.+...+..+...+.+..++++++|++++|.++.++ +..+++|++|++++|.++.++ ++.+++|++|++++|.++.
T Consensus 45 ~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~ 120 (457)
T 3bz5_A 45 TSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTK 120 (457)
T ss_dssp CEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSC
T ss_pred CEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCe
Confidence 444445555555555666666666666666666654 566666666666666666653 5566666666666666666
Q ss_pred cCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhccccccc
Q 046723 245 LPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSI 324 (562)
Q Consensus 245 lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 324 (562)
+| ++.+++|++|++++|.++.++ ++.+++|++|++++|..+..++ ++.+++|++|++++|....
T Consensus 121 l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~--------- 184 (457)
T 3bz5_A 121 LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE--------- 184 (457)
T ss_dssp CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC---------
T ss_pred ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce---------
Confidence 54 666666666666666666653 5566666666666665555552 4566666666666665442
Q ss_pred ccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeecccccc
Q 046723 325 LFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVIL 404 (562)
Q Consensus 325 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 404 (562)
+ .+..+++|+.|+++.+....++ ....++|+.|+++++.-.. .+ +..+++|+.|+++++ .+
T Consensus 185 --------l-~l~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N-~l 245 (457)
T 3bz5_A 185 --------L-DVSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVN-PL 245 (457)
T ss_dssp --------C-CCTTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSS-CC
T ss_pred --------e-ccccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCC-cC
Confidence 1 1556666777777666655542 1222367777776654333 33 556667777777666 44
Q ss_pred ceeeccchhhhhhhhhccccEEEE----------ecCCCCCCCccccccCCCceEEEecCcchhhhhcCCCCCCcccccc
Q 046723 405 EELKMDYAEEVQQFAFRSLNMVEI----------CNCIKLKDLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMA 474 (562)
Q Consensus 405 ~~l~~~~~~~~~~~~~~~L~~L~L----------~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~ 474 (562)
..++.. .+++|+.|++ ++|..+..++ .+.+++|+.|++++|..++.++... ..+.. .
T Consensus 246 ~~~~~~--------~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~--~~L~~--L 312 (457)
T 3bz5_A 246 TELDVS--------TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQA--AGITE--L 312 (457)
T ss_dssp SCCCCT--------TCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTT--CCCSC--C
T ss_pred CCcCHH--------HCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCC--CcceE--e
Confidence 444321 1444444433 3332222222 3456777777777776665554310 00000 1
Q ss_pred CCCCccccceeeccCCcCCcccCcCCCCCCCcceeeecc
Q 046723 475 NLNPFEKLQNLEVAGARNLKSIYWKPLPFPHLKAMSFLH 513 (562)
Q Consensus 475 ~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~ 513 (562)
.+...++|+.|+++++ +++.++ ...+++|+.|++.+
T Consensus 313 ~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 313 DLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVN 348 (457)
T ss_dssp CCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCS
T ss_pred chhhcccCCEEECCCC-cccccc--cccCCcCcEEECCC
Confidence 2334455555555553 234332 44566677776665
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=1.5e-22 Score=216.46 Aligned_cols=149 Identities=24% Similarity=0.312 Sum_probs=126.8
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCC
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCEL 242 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 242 (562)
..+.+.+.+...+|.. -..+++.|++++|.++.++ .+..+++|++|++++|.++.+++..|..+++|++|++++|.+
T Consensus 10 ~~~~c~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 10 ITYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp TEEECCSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred cEEEeCCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 4455556666666652 2367999999999998875 578999999999999999999888899999999999999999
Q ss_pred cccC-cccCCcccCcEEeCCCCCccccch-hhhCCCCCcEEeccCcCCCCc--cchhhhcCCCCCCEEEecCCCccch
Q 046723 243 TKLP-VGISELVSLQHLDLSESDIEELPG-ELKALVNLKCLDLEYTGNLIT--IPRQLISNLSRLQVLRMFGASHKAI 316 (562)
Q Consensus 243 ~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~--~p~~~~~~l~~L~~L~l~~~~~~~~ 316 (562)
+.+| ..++++++|++|++++|.++.+|. .++++++|++|++++| .+.. +|.. ++++++|++|++.+|.....
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSCCCEE
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeCcCCcccee
Confidence 8875 679999999999999999998876 5899999999999998 4443 6766 89999999999999977643
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.3e-22 Score=206.10 Aligned_cols=271 Identities=17% Similarity=0.244 Sum_probs=222.2
Q ss_pred CCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccC-cccCCcccCcEEeCCCCCccccch-hhhCCCCCcE
Q 046723 203 PTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP-VGISELVSLQHLDLSESDIEELPG-ELKALVNLKC 280 (562)
Q Consensus 203 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~ 280 (562)
..+.++++|+++++.++.+|...+..+++|++|++++|.++.++ ..+..+++|++|++++|.+..+|+ .++++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 35689999999999999999998999999999999999999876 489999999999999999997765 5799999999
Q ss_pred EeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEecccchHHHHh
Q 046723 281 LDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLR 360 (562)
Q Consensus 281 L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~ 360 (562)
|++++| .+..+|...++++++|++|++.+|.... .....+..+++|+.|+++.+.....+
T Consensus 122 L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~---------------~~~~~~~~l~~L~~L~l~~n~l~~~~---- 181 (390)
T 3o6n_A 122 LVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLER---------------IEDDTFQATTSLQNLQLSSNRLTHVD---- 181 (390)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCB---------------CCTTTTSSCTTCCEEECCSSCCSBCC----
T ss_pred EECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCc---------------cChhhccCCCCCCEEECCCCcCCccc----
Confidence 999998 7888998867899999999999997653 23445788999999999988877653
Q ss_pred hhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCCccc
Q 046723 361 SWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLTFL 440 (562)
Q Consensus 361 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l 440 (562)
....++|+.|+++++... .+...++|+.|++.++ .+..++... +++|+.|+++++ .++..+++
T Consensus 182 -~~~l~~L~~L~l~~n~l~------~~~~~~~L~~L~l~~n-~l~~~~~~~--------~~~L~~L~l~~n-~l~~~~~l 244 (390)
T 3o6n_A 182 -LSLIPSLFHANVSYNLLS------TLAIPIAVEELDASHN-SINVVRGPV--------NVELTILKLQHN-NLTDTAWL 244 (390)
T ss_dssp -GGGCTTCSEEECCSSCCS------EEECCSSCSEEECCSS-CCCEEECCC--------CSSCCEEECCSS-CCCCCGGG
T ss_pred -cccccccceeeccccccc------ccCCCCcceEEECCCC-eeeeccccc--------cccccEEECCCC-CCcccHHH
Confidence 223348999999876432 2344568999999987 666665432 689999999999 78888899
Q ss_pred cccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCcCCcccCcCCCCCCCcceeeeccCCCCccc
Q 046723 441 VFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKSIYWKPLPFPHLKAMSFLHCKKLKKL 520 (562)
Q Consensus 441 ~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~C~~L~~l 520 (562)
..+++|++|+++++. ++.++. ..+..+++|+.|+++++ .+..++.....+++|++|++++| +++.+
T Consensus 245 ~~l~~L~~L~Ls~n~-l~~~~~-----------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~ 310 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNE-LEKIMY-----------HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHV 310 (390)
T ss_dssp GGCTTCSEEECCSSC-CCEEES-----------GGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCC
T ss_pred cCCCCccEEECCCCc-CCCcCh-----------hHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceec
Confidence 999999999999975 333321 24567899999999996 57777777778999999999998 67777
Q ss_pred cCCC
Q 046723 521 PLDS 524 (562)
Q Consensus 521 p~~~ 524 (562)
|...
T Consensus 311 ~~~~ 314 (390)
T 3o6n_A 311 ERNQ 314 (390)
T ss_dssp GGGH
T ss_pred Cccc
Confidence 7543
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=2e-22 Score=217.10 Aligned_cols=326 Identities=17% Similarity=0.174 Sum_probs=224.9
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCC
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCEL 242 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 242 (562)
..+.+.+.++..+|.. -.++++.|++++|.+..++ .+.++++|++|++++|.++.+++..|..+++|++|++++|.+
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp TEEECTTSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEccCCCcccCCCC-CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 3455566666666653 2378999999999998875 488999999999999999999888899999999999999999
Q ss_pred ccc-CcccCCcccCcEEeCCCCCccccc-hhhhCCCCCcEEeccCcCCCC-ccchhhhcCCCCCCEEEecCCCccchhcc
Q 046723 243 TKL-PVGISELVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTGNLI-TIPRQLISNLSRLQVLRMFGASHKAIKEA 319 (562)
Q Consensus 243 ~~l-p~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~-~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 319 (562)
+.+ |..++++++|++|++++|.+..+| ..++++++|++|++++|.... .+|.. ++++++|++|++++|........
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEECTT
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecChh
Confidence 987 888999999999999999998776 679999999999999984332 46766 89999999999999987653111
Q ss_pred cccc----------ccc--CCcccchhhhcCccccceeeEEEecccc--hHHHHhhhhhhccccceeec-----------
Q 046723 320 SENS----------ILF--GGGELIVEELLGLKHLEVISLTLRNSHG--LQSFLRSWKLRRCTRALLLQ----------- 374 (562)
Q Consensus 320 ~~~~----------~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~l~~~~~~~~~L~~L~l~----------- 374 (562)
.... ... ..-...........+|+.|+++.+...+ .+..... ..+|+.+.+.
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~---l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQN---LAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHT---TTTCEEEEEEEECCTTSCCCS
T ss_pred hhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcc---ccccccccccccccccCCccc
Confidence 0000 000 0001111222223367777777665432 2222221 2234433332
Q ss_pred ---------------------cccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCC
Q 046723 375 ---------------------CFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIK 433 (562)
Q Consensus 375 ---------------------~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~ 433 (562)
.+........ .+..+++|+.|++.++ .+..++ .... +++|++|++.+| .
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~-~~~~l~-~l~~------~~~L~~L~l~~n-~ 318 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-KFHCLANVSAMSLAGV-SIKYLE-DVPK------HFKWQSLSIIRC-Q 318 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCGGGG-SCGGGTTCSEEEEESC-CCCCCC-CCCT------TCCCSEEEEESC-C
T ss_pred ccChHHhhhhhhccHhheecccccccccccc-ccccCCCCCEEEecCc-cchhhh-hccc------cccCCEEEcccc-c
Confidence 1111111111 2566778888888776 455555 3332 678888888888 4
Q ss_pred CCCCccccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCcCCccc---CcCCCCCCCcceee
Q 046723 434 LKDLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKSI---YWKPLPFPHLKAMS 510 (562)
Q Consensus 434 l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~---~~~~~~~~~L~~L~ 510 (562)
+..+|.+ .+++|++|++++|..+..+ ....+++|+.|+++++. +..+ +.....+++|++|+
T Consensus 319 l~~lp~~-~l~~L~~L~l~~n~~~~~~--------------~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~ 382 (606)
T 3vq2_A 319 LKQFPTL-DLPFLKSLTLTMNKGSISF--------------KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLD 382 (606)
T ss_dssp CSSCCCC-CCSSCCEEEEESCSSCEEC--------------CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEE
T ss_pred CcccccC-CCCccceeeccCCcCccch--------------hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeE
Confidence 4777766 8888888888887544332 35578999999999873 3333 33445679999999
Q ss_pred eccCCCCccccC
Q 046723 511 FLHCKKLKKLPL 522 (562)
Q Consensus 511 i~~C~~L~~lp~ 522 (562)
+.+|. ++.+|.
T Consensus 383 L~~n~-l~~~~~ 393 (606)
T 3vq2_A 383 LSFNG-AIIMSA 393 (606)
T ss_dssp CCSCS-EEEECC
T ss_pred CCCCc-cccchh
Confidence 99875 666763
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1.4e-22 Score=218.23 Aligned_cols=271 Identities=16% Similarity=0.220 Sum_probs=128.7
Q ss_pred cCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCcccc-chhhhCCCCCcEEeccCcCCCCccch
Q 046723 216 NNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTGNLITIPR 294 (562)
Q Consensus 216 ~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~ 294 (562)
+.++.+++..+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+ |..++.+++|++|++++|.....+|.
T Consensus 264 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 264 HYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp CCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred CccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence 33333333334444444444444444444444444444444444444444433 22344444444444444433323333
Q ss_pred hhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeec
Q 046723 295 QLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQ 374 (562)
Q Consensus 295 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~ 374 (562)
..+.++++|++|++++|.... .......+..+++|+.|+++.+....... .....+++|+.|+++
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIET-------------SDCCNLQLRNLSHLQSLNLSYNEPLSLKT--EAFKECPQLELLDLA 408 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCE-------------EEESTTTTTTCTTCCEEECCSCSCEEECT--TTTTTCTTCSEEECT
T ss_pred hhhhccCcCCEEECCCCcccc-------------ccCcchhcccCCCCCEEECCCCcCCcCCH--HHhcCCccCCeEECC
Confidence 334444444444444444332 00113345556666666665554433211 111112356666666
Q ss_pred cccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCC-----CccccccCCCceE
Q 046723 375 CFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKD-----LTFLVFAPNLKSI 449 (562)
Q Consensus 375 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~-----l~~l~~l~~L~~L 449 (562)
++......+...+..+++|+.|+++++ .+......... .+++|++|++++| .+.. ...+..+++|++|
T Consensus 409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-----~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L 481 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFD-----GLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEIL 481 (606)
T ss_dssp TCCEECCTTCCTTTTCTTCCEEECTTC-CCBTTCTTTTT-----TCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEE
T ss_pred CCcCCCcccchhhhCcccCCEEECCCC-ccCCcCHHHHh-----CCCCCCEEECCCC-CCCccccccchhhccCCCccEE
Confidence 554333322223455666666666665 33322222111 1566666766666 3332 1235566667777
Q ss_pred EEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCcCCcccCcCCCCCCCcceeeeccCCCCccccC
Q 046723 450 KVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKSIYWKPLPFPHLKAMSFLHCKKLKKLPL 522 (562)
Q Consensus 450 ~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~C~~L~~lp~ 522 (562)
++++|.. +.++. ..+..+++|+.|+++++.--...+.....+++| +|++.+| +++.+|.
T Consensus 482 ~Ls~n~l-~~~~~-----------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~ 540 (606)
T 3t6q_A 482 VLSFCDL-SSIDQ-----------HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILP 540 (606)
T ss_dssp ECTTSCC-CEECT-----------TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCG
T ss_pred ECCCCcc-CccCh-----------hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCH
Confidence 7766542 22211 245567777777777764333333344556777 7777776 4444443
No 21
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=1.6e-22 Score=200.76 Aligned_cols=295 Identities=16% Similarity=0.169 Sum_probs=221.1
Q ss_pred ccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCccc-CcccCCcccCcEEeCCC
Q 046723 184 EKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKL-PVGISELVSLQHLDLSE 262 (562)
Q Consensus 184 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~ 262 (562)
.+++.+++.++.++.+|.. -.++|++|++++|.++.+++..+..+++|++|++++|.++.+ |..++++++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKE-ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSC-CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCC-CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 3678899999988888753 247899999999999998877799999999999999999877 77899999999999999
Q ss_pred CCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCcccc
Q 046723 263 SDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHL 342 (562)
Q Consensus 263 ~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 342 (562)
|.++.+|..+. ++|++|++++| .+..+|...+.++++|++|++.+|.... .......+..+ +|
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLEN-------------SGFEPGAFDGL-KL 174 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBG-------------GGSCTTSSCSC-CC
T ss_pred CcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCcccc-------------CCCCcccccCC-cc
Confidence 99999988765 89999999998 6778887768999999999999987653 11234455666 88
Q ss_pred ceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhcc
Q 046723 343 EVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRS 422 (562)
Q Consensus 343 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 422 (562)
+.|+++.+....++... .++|++|+++++.... .+...+..+++|+.|+++++ .+..++..... .+++
T Consensus 175 ~~L~l~~n~l~~l~~~~-----~~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~-----~l~~ 242 (332)
T 2ft3_A 175 NYLRISEAKLTGIPKDL-----PETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHN-QIRMIENGSLS-----FLPT 242 (332)
T ss_dssp SCCBCCSSBCSSCCSSS-----CSSCSCCBCCSSCCCC-CCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGG-----GCTT
T ss_pred CEEECcCCCCCccCccc-----cCCCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCC-cCCcCChhHhh-----CCCC
Confidence 99999888877655322 2489999999875433 33345788999999999987 66666543332 3889
Q ss_pred ccEEEEecCCCCCCCc-cccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCcCC--cccCcC
Q 046723 423 LNMVEICNCIKLKDLT-FLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNL--KSIYWK 499 (562)
Q Consensus 423 L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L--~~~~~~ 499 (562)
|+.|+++++ .++.+| .+..+++|++|+++++. ++.++...+... .....++.|+.|++.+++-. ...+..
T Consensus 243 L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~-----~~~~~~~~l~~L~l~~N~~~~~~~~~~~ 315 (332)
T 2ft3_A 243 LRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPV-----GFGVKRAYYNGISLFNNPVPYWEVQPAT 315 (332)
T ss_dssp CCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCS-----SCCSSSCCBSEEECCSSSSCGGGSCGGG
T ss_pred CCEEECCCC-cCeecChhhhcCccCCEEECCCCC-CCccChhHcccc-----ccccccccccceEeecCcccccccCccc
Confidence 999999999 667765 48899999999999864 565543221110 01123688999999998643 112223
Q ss_pred CCCCCCcceeeeccCC
Q 046723 500 PLPFPHLKAMSFLHCK 515 (562)
Q Consensus 500 ~~~~~~L~~L~i~~C~ 515 (562)
...+++|+.+.+.++.
T Consensus 316 ~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 316 FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GTTBCCSTTEEC----
T ss_pred ccccchhhhhhccccc
Confidence 3457788888888875
No 22
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=1.2e-22 Score=209.85 Aligned_cols=287 Identities=16% Similarity=0.177 Sum_probs=213.1
Q ss_pred CccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEE
Q 046723 179 DVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHL 258 (562)
Q Consensus 179 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L 258 (562)
.+..+++++.|+++++.+..++.+..+++|++|++++|.++.++ ++.+++|++|++++|.++.+| ++++++|++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 34556899999999999999988899999999999999999874 788999999999999999885 8899999999
Q ss_pred eCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcC
Q 046723 259 DLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLG 338 (562)
Q Consensus 259 ~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (562)
++++|.++.+| ++.+++|++|++++| .+..++ ++++++|++|++.+|.... .. .+..
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~----------------~~-~~~~ 168 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKIT----------------KL-DVTP 168 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCC----------------CC-CCTT
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCccc----------------cc-cccc
Confidence 99999999886 889999999999998 566665 7789999999999885432 11 4678
Q ss_pred ccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhh
Q 046723 339 LKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQF 418 (562)
Q Consensus 339 l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 418 (562)
+++|+.|+++.+....++ ....++|+.|+++++.-.. .+ +..+++|+.|+++++ .+..++ ..
T Consensus 169 l~~L~~L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N-~l~~ip--~~------ 230 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITELD-----VSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSN-KLTEID--VT------ 230 (457)
T ss_dssp CTTCCEEECCSSCCCCCC-----CTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSS-CCSCCC--CT------
T ss_pred CCcCCEEECCCCccceec-----cccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCC-cccccC--cc------
Confidence 899999999988887764 2233489999998875433 33 678899999999988 666665 22
Q ss_pred hhccccEEEEecCCCCCCCccccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCcCCcccCc
Q 046723 419 AFRSLNMVEICNCIKLKDLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKSIYW 498 (562)
Q Consensus 419 ~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 498 (562)
.+++|+.|+++++ .++.++ ++.+++|+.|++++. .++.+.-. ....... .....+++|+.|++++|..+..++.
T Consensus 231 ~l~~L~~L~l~~N-~l~~~~-~~~l~~L~~L~l~~n-~L~~L~l~-~n~~~~~--~~~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 231 PLTQLTYFDCSVN-PLTELD-VSTLSKLTTLHCIQT-DLLEIDLT-HNTQLIY--FQAEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp TCTTCSEEECCSS-CCSCCC-CTTCTTCCEEECTTC-CCSCCCCT-TCTTCCE--EECTTCTTCCCCCCTTCTTCCEEEC
T ss_pred ccCCCCEEEeeCC-cCCCcC-HHHCCCCCEEeccCC-CCCEEECC-CCccCCc--ccccccccCCEEECCCCcccceecc
Confidence 2889999999999 677654 556777766665542 23332110 0000000 1235678999999999887777654
Q ss_pred CCCCCCCcceeeeccCCCCccc
Q 046723 499 KPLPFPHLKAMSFLHCKKLKKL 520 (562)
Q Consensus 499 ~~~~~~~L~~L~i~~C~~L~~l 520 (562)
. +++|+.|++.+|++|+.+
T Consensus 305 ~---~~~L~~L~l~~~~~L~~L 323 (457)
T 3bz5_A 305 Q---AAGITELDLSQNPKLVYL 323 (457)
T ss_dssp T---TCCCSCCCCTTCTTCCEE
T ss_pred C---CCcceEechhhcccCCEE
Confidence 2 244444445555444444
No 23
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=6.5e-23 Score=226.24 Aligned_cols=147 Identities=22% Similarity=0.240 Sum_probs=90.5
Q ss_pred cEEEeeccccccCCCccccccceEEecccccccc-CCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCc
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRN-LSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELT 243 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 243 (562)
+.+...+..+.....+..+.+++.|++.+|.+.. ++.+..+++|++|++++|.++...+..+..+++|++|++++|.++
T Consensus 181 ~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 260 (768)
T 3rgz_A 181 KHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260 (768)
T ss_dssp CEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCE
T ss_pred CEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCccc
Confidence 3344444444444445667778888888887765 455777888888888888887665666778888888888887766
Q ss_pred ccCcccCCcccCcEEeCCCCCcc-ccchhhhCC-CCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCc
Q 046723 244 KLPVGISELVSLQHLDLSESDIE-ELPGELKAL-VNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASH 313 (562)
Q Consensus 244 ~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l-~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~ 313 (562)
...+.. .+++|++|++++|.+. .+|..+... ++|++|++++|.....+|.. ++++++|++|++.+|..
T Consensus 261 ~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l 330 (768)
T 3rgz_A 261 GPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNF 330 (768)
T ss_dssp ESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEE
T ss_pred CccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcc
Confidence 322222 5556666666666555 555555443 66666666665333344443 55566666666665544
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=3.8e-22 Score=212.62 Aligned_cols=142 Identities=28% Similarity=0.394 Sum_probs=118.1
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCC
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCEL 242 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 242 (562)
+.+...+..+..+|... .++++.|++++|.+..++ .+..+++|++|++++|.++.+++..|..+++|++|++++|.+
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC
Confidence 55666666676666532 378999999999999885 588999999999999999999888799999999999999999
Q ss_pred cccCcccCCcccCcEEeCCCCCccccc--hhhhCCCCCcEEeccCcCCCCccchhhhcCCCCC--CEEEecCCCc
Q 046723 243 TKLPVGISELVSLQHLDLSESDIEELP--GELKALVNLKCLDLEYTGNLITIPRQLISNLSRL--QVLRMFGASH 313 (562)
Q Consensus 243 ~~lp~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L--~~L~l~~~~~ 313 (562)
+.+|.. .+++|++|++++|.++.+| ..++++++|++|++++| .+.... +..+++| ++|++.+|..
T Consensus 113 ~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 113 QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeecccc
Confidence 999887 8999999999999998754 78999999999999997 444432 4455555 9999988866
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=9.7e-23 Score=218.49 Aligned_cols=290 Identities=16% Similarity=0.207 Sum_probs=231.0
Q ss_pred ccccceEEeccccccccCCC--CCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCc-ccCCcccCcEE
Q 046723 182 GWEKARRLSLMQNQIRNLSE--IPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPV-GISELVSLQHL 258 (562)
Q Consensus 182 ~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L 258 (562)
.+.+++.+++.++.+..++. +..+++|++|++++|.++.+++..|..+++|++|++++|.++.+|. .++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 45788999999999998875 5788999999999999999988779999999999999999998865 56999999999
Q ss_pred eCCCCCccccchhh-hCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhc
Q 046723 259 DLSESDIEELPGEL-KALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELL 337 (562)
Q Consensus 259 ~l~~~~l~~lp~~~-~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (562)
++++|.++.+|..+ +++++|++|++++| .+..+++..++++++|++|++++|.+... .++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------------~~~ 189 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV------------------DLS 189 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBC------------------CGG
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCc------------------Chh
Confidence 99999999998874 89999999999998 56667665589999999999999976631 356
Q ss_pred CccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhh
Q 046723 338 GLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQ 417 (562)
Q Consensus 338 ~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 417 (562)
.+++|+.|+++.+....+. .+.+|+.|+++++....... ...++|+.|++.++ .+... ...
T Consensus 190 ~l~~L~~L~l~~n~l~~l~-------~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~L~~n-~l~~~-~~l------ 250 (597)
T 3oja_B 190 LIPSLFHANVSYNLLSTLA-------IPIAVEELDASHNSINVVRG----PVNVELTILKLQHN-NLTDT-AWL------ 250 (597)
T ss_dssp GCTTCSEEECCSSCCSEEE-------CCTTCSEEECCSSCCCEEEC----SCCSCCCEEECCSS-CCCCC-GGG------
T ss_pred hhhhhhhhhcccCcccccc-------CCchhheeeccCCccccccc----ccCCCCCEEECCCC-CCCCC-hhh------
Confidence 6788999988887666542 23389999999876433222 22468999999988 55543 222
Q ss_pred hhhccccEEEEecCCCCCCC--ccccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCcCCcc
Q 046723 418 FAFRSLNMVEICNCIKLKDL--TFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKS 495 (562)
Q Consensus 418 ~~~~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 495 (562)
..+++|+.|+++++ .+... ..++.+++|+.|+|++|. +..++. ....+|+|+.|++++| .+..
T Consensus 251 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~------------~~~~l~~L~~L~Ls~N-~l~~ 315 (597)
T 3oja_B 251 LNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVALNL------------YGQPIPTLKVLDLSHN-HLLH 315 (597)
T ss_dssp GGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTSC-CCEEEC------------SSSCCTTCCEEECCSS-CCCC
T ss_pred ccCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCCC-CCCCCc------------ccccCCCCcEEECCCC-CCCc
Confidence 23899999999999 56653 458899999999999865 444433 4467999999999997 4667
Q ss_pred cCcCCCCCCCcceeeeccCCCCccccCCCc
Q 046723 496 IYWKPLPFPHLKAMSFLHCKKLKKLPLDSN 525 (562)
Q Consensus 496 ~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~ 525 (562)
++.....+++|+.|++++|. +..+|....
T Consensus 316 i~~~~~~l~~L~~L~L~~N~-l~~~~~~~~ 344 (597)
T 3oja_B 316 VERNQPQFDRLENLYLDHNS-IVTLKLSTH 344 (597)
T ss_dssp CGGGHHHHTTCSEEECCSSC-CCCCCCCTT
T ss_pred cCcccccCCCCCEEECCCCC-CCCcChhhc
Confidence 77666678999999999975 677774443
No 26
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=7.9e-22 Score=195.51 Aligned_cols=294 Identities=16% Similarity=0.161 Sum_probs=221.6
Q ss_pred ccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCccc-CcccCCcccCcEEeCCC
Q 046723 184 EKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKL-PVGISELVSLQHLDLSE 262 (562)
Q Consensus 184 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~ 262 (562)
.+++.+++.++.++.+|.. -.+++++|++++|.++.+++..+..+++|++|++++|.++.+ |..++++++|++|++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 4678899998888887752 237899999999999999887799999999999999999877 78899999999999999
Q ss_pred CCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCcccc
Q 046723 263 SDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHL 342 (562)
Q Consensus 263 ~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 342 (562)
|.++.+|..+. ++|++|++++| .+..++...+.++++|++|++.+|.... .......+..+++|
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l~~L 173 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKS-------------SGIENGAFQGMKKL 173 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCG-------------GGBCTTGGGGCTTC
T ss_pred CcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCc-------------cCcChhhccCCCCc
Confidence 99999987765 79999999998 6777887778999999999999987653 12345667889999
Q ss_pred ceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhcc
Q 046723 343 EVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRS 422 (562)
Q Consensus 343 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 422 (562)
+.|+++.+....++... .++|++|+++++.. .......+..+++|+.|+++++ .+..++..... .+++
T Consensus 174 ~~L~l~~n~l~~l~~~~-----~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-----~l~~ 241 (330)
T 1xku_A 174 SYIRIADTNITTIPQGL-----PPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLA-----NTPH 241 (330)
T ss_dssp CEEECCSSCCCSCCSSC-----CTTCSEEECTTSCC-CEECTGGGTTCTTCCEEECCSS-CCCEECTTTGG-----GSTT
T ss_pred CEEECCCCccccCCccc-----cccCCEEECCCCcC-CccCHHHhcCCCCCCEEECCCC-cCceeChhhcc-----CCCC
Confidence 99999988777655322 14899999998764 3333345788899999999887 66666553322 2789
Q ss_pred ccEEEEecCCCCCCCc-cccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCcCCcccC---c
Q 046723 423 LNMVEICNCIKLKDLT-FLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKSIY---W 498 (562)
Q Consensus 423 L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~---~ 498 (562)
|+.|++++| .++.++ .+..+++|++|+++++. ++.++...+... .....++.|+.|++.+.+- ..+. .
T Consensus 242 L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~-----~~~~~~~~l~~l~l~~N~~-~~~~i~~~ 313 (330)
T 1xku_A 242 LRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPP-----GYNTKKASYSGVSLFSNPV-QYWEIQPS 313 (330)
T ss_dssp CCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCS-----SCCTTSCCCSEEECCSSSS-CGGGSCGG
T ss_pred CCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhcCCc-----ccccccccccceEeecCcc-cccccCcc
Confidence 999999999 566664 58889999999999865 555544222111 1123467889999988763 3222 2
Q ss_pred CCCCCCCcceeeeccC
Q 046723 499 KPLPFPHLKAMSFLHC 514 (562)
Q Consensus 499 ~~~~~~~L~~L~i~~C 514 (562)
....+++|+.++++++
T Consensus 314 ~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 314 TFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGTTCCCGGGEEC---
T ss_pred ccccccceeEEEeccc
Confidence 2334667777777764
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=5.1e-22 Score=213.86 Aligned_cols=334 Identities=16% Similarity=0.179 Sum_probs=193.5
Q ss_pred cEEEeeccccccC--CCccccccceEEeccccccccC--CCCCCCccccEEEccccCccccchhhhcCCCCCc--EEEec
Q 046723 165 NFFVYAGVGLVRA--PDVRGWEKARRLSLMQNQIRNL--SEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLK--VLNLS 238 (562)
Q Consensus 165 ~~~~~~~~~~~~~--~~~~~~~~l~~L~l~~~~~~~l--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~--~L~l~ 238 (562)
+.+...+..+... ..+..+.+++.|++.+|.+..+ +.+..+++|++|++++|.++.+++..++.+++|+ .|+++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecC
Confidence 3444444444432 3456667777888887777765 5555677888888888877777666677777777 67777
Q ss_pred CCCCcccCcccCCcc----------------------------------------------------cCcEEeCCCCCcc
Q 046723 239 HCELTKLPVGISELV----------------------------------------------------SLQHLDLSESDIE 266 (562)
Q Consensus 239 ~~~~~~lp~~~~~l~----------------------------------------------------~L~~L~l~~~~l~ 266 (562)
+|.++.+++...... +|++|+++++.+.
T Consensus 188 ~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 766554432211111 3334444444444
Q ss_pred ccchh-hhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccc------cccCC----cccchhh
Q 046723 267 ELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENS------ILFGG----GELIVEE 335 (562)
Q Consensus 267 ~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------~~~~~----~~~~~~~ 335 (562)
.++.. ++.+++|++|++++| .+..+|.. +.++++|++|++.+|............ ..... .......
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTAT-HLSELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTS-CCSCCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred ccCHHHhccccCCCEEeccCC-ccCCCChh-hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 33332 444555555555554 34445544 445555555555555443211000000 00000 1112234
Q ss_pred hcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeecccccccee-eccchhh
Q 046723 336 LLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEEL-KMDYAEE 414 (562)
Q Consensus 336 l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l-~~~~~~~ 414 (562)
+..+++|+.|+++.+...............++|++|+++++.... .....+..+++|+.|++.++ .+... +....
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-- 421 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFT-RLKVKDAQSPF-- 421 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE-ECTTTTTTCTTCSEEECTTC-CEECCTTCCTT--
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc-CCHHHhcCCccCCeEECCCC-cCCCcccchhh--
Confidence 677788888888877665543211222333478888888765432 22234677888888888877 33332 22211
Q ss_pred hhhhhhccccEEEEecCCCCCCC--ccccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCcC
Q 046723 415 VQQFAFRSLNMVEICNCIKLKDL--TFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARN 492 (562)
Q Consensus 415 ~~~~~~~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 492 (562)
..+++|+.|++++| .+... ..++.+++|++|++++|......+. .......+++|+.|++++|.
T Consensus 422 ---~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~~~~l~~L~~L~Ls~n~- 487 (606)
T 3t6q_A 422 ---QNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ---------KTNSLQTLGRLEILVLSFCD- 487 (606)
T ss_dssp ---TTCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC---------SSCGGGGCTTCCEEECTTSC-
T ss_pred ---hCcccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECCCCCCCccccc---------cchhhccCCCccEEECCCCc-
Confidence 12788999999998 45542 3477899999999998764321111 11235678999999999985
Q ss_pred Cccc-CcCCCCCCCcceeeeccCCCCcc
Q 046723 493 LKSI-YWKPLPFPHLKAMSFLHCKKLKK 519 (562)
Q Consensus 493 L~~~-~~~~~~~~~L~~L~i~~C~~L~~ 519 (562)
+..+ +.....+++|++|++++|. ++.
T Consensus 488 l~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 514 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMMNHVDLSHNR-LTS 514 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSC-CCG
T ss_pred cCccChhhhccccCCCEEECCCCc-cCc
Confidence 4444 4556778999999999984 443
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=6.2e-22 Score=210.55 Aligned_cols=145 Identities=18% Similarity=0.222 Sum_probs=108.8
Q ss_pred cEEEeeccccccC--CCccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCC
Q 046723 165 NFFVYAGVGLVRA--PDVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHC 240 (562)
Q Consensus 165 ~~~~~~~~~~~~~--~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 240 (562)
+.+...+..+... ..+..++++++|++++|.+..++ .+..+++|++|++++|.++.+++..++.+++|++|++++|
T Consensus 29 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 29 KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp CEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred cEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence 4444455544443 35778899999999999988875 4788999999999999999998888899999999999999
Q ss_pred CCcc--cCcccCCcccCcEEeCCCCC-ccccc-hhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecC
Q 046723 241 ELTK--LPVGISELVSLQHLDLSESD-IEELP-GELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFG 310 (562)
Q Consensus 241 ~~~~--lp~~~~~l~~L~~L~l~~~~-l~~lp-~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~ 310 (562)
.++. .|..++++++|++|++++|. +..+| ..++.+++|++|++++|......|.. ++++++|++|++.+
T Consensus 109 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHL 181 (549)
T ss_dssp CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEEC
T ss_pred cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEeccc
Confidence 8884 46788999999999999986 66676 46788888888888887433333433 44444444444433
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=8.2e-22 Score=204.54 Aligned_cols=320 Identities=16% Similarity=0.221 Sum_probs=222.9
Q ss_pred cEEEeeccccccC--CCccccccceEEeccccccc-cC--CCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecC
Q 046723 165 NFFVYAGVGLVRA--PDVRGWEKARRLSLMQNQIR-NL--SEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSH 239 (562)
Q Consensus 165 ~~~~~~~~~~~~~--~~~~~~~~l~~L~l~~~~~~-~l--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 239 (562)
+.+...+..+... ..+..+++++.|++.+|.+. .+ ..+..+++|++|++++|.++.+++..+..+++|++|++++
T Consensus 33 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 112 (455)
T 3v47_A 33 NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ 112 (455)
T ss_dssp CEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTT
T ss_pred CEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCC
Confidence 4455555554443 45778899999999999875 33 3478899999999999999988777789999999999999
Q ss_pred CCCcc-cCcc--cCCcccCcEEeCCCCCcccc-chh-hhCCCCCcEEeccCcCCCCccchhhhcCC--------------
Q 046723 240 CELTK-LPVG--ISELVSLQHLDLSESDIEEL-PGE-LKALVNLKCLDLEYTGNLITIPRQLISNL-------------- 300 (562)
Q Consensus 240 ~~~~~-lp~~--~~~l~~L~~L~l~~~~l~~l-p~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l-------------- 300 (562)
|.++. .|.. +..+++|++|++++|.+..+ |.. ++++++|++|++++|. +..++...+..+
T Consensus 113 n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~ 191 (455)
T 3v47_A 113 CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSIT 191 (455)
T ss_dssp SCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCB
T ss_pred CCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCc
Confidence 98875 3444 88999999999999999876 544 7899999999999984 444433224333
Q ss_pred --------------------CCCCEEEecCCCccchhcccccccccCCcccchhhhc---CccccceeeEEEecccch--
Q 046723 301 --------------------SRLQVLRMFGASHKAIKEASENSILFGGGELIVEELL---GLKHLEVISLTLRNSHGL-- 355 (562)
Q Consensus 301 --------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~l~~L~~L~l~~~~~~~~-- 355 (562)
++|++|++++|.... ..+..+. ...+|+.|+++.+.....
T Consensus 192 l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~---------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE---------------SMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH---------------HHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred ccccchhhccccccccccccceeeeEecCCCcccc---------------cchhhhhccccccceeeEeecccccccccc
Confidence 445555555554332 1222222 236777777765432111
Q ss_pred --------HHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccccEEE
Q 046723 356 --------QSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVE 427 (562)
Q Consensus 356 --------~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~ 427 (562)
...........+|+.|+++++......+ ..+..+++|+.|++.++ .+..++..... .+++|++|+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-----~l~~L~~L~ 329 (455)
T 3v47_A 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQN-EINKIDDNAFW-----GLTHLLKLN 329 (455)
T ss_dssp TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT-TTTTTCTTCCEEECTTS-CCCEECTTTTT-----TCTTCCEEE
T ss_pred chhhhccCcccccccccccCceEEEecCccccccch-hhcccCCCCCEEECCCC-cccccChhHhc-----CcccCCEEE
Confidence 0000001112489999999876544333 34788999999999988 66666543332 289999999
Q ss_pred EecCCCCCCC--ccccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCcCCcccCcCC-CCCC
Q 046723 428 ICNCIKLKDL--TFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKSIYWKP-LPFP 504 (562)
Q Consensus 428 L~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~-~~~~ 504 (562)
+++| .++.+ ..++.+++|++|+|++|. ++.++. ..+..+++|+.|+++++ .++.++... ..++
T Consensus 330 Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 330 LSQN-FLGSIDSRMFENLDKLEVLDLSYNH-IRALGD-----------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLT 395 (455)
T ss_dssp CCSS-CCCEECGGGGTTCTTCCEEECCSSC-CCEECT-----------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred CCCC-ccCCcChhHhcCcccCCEEECCCCc-ccccCh-----------hhccccccccEEECCCC-ccccCCHhHhccCC
Confidence 9999 56664 347889999999999975 344322 25677999999999996 577776543 5789
Q ss_pred CcceeeeccCCCCcccc
Q 046723 505 HLKAMSFLHCKKLKKLP 521 (562)
Q Consensus 505 ~L~~L~i~~C~~L~~lp 521 (562)
+|++|++.+++---..|
T Consensus 396 ~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 396 SLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCBCCCTT
T ss_pred cccEEEccCCCcccCCC
Confidence 99999999876433343
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=6.4e-22 Score=217.44 Aligned_cols=308 Identities=14% Similarity=0.189 Sum_probs=225.5
Q ss_pred ccccceEEecccccccc-CC-CCCCCccccEEEccccC-ccc--cchhhhcC-------CCCCcEEEecCCCCcccCc--
Q 046723 182 GWEKARRLSLMQNQIRN-LS-EIPTCPHLLTLFLNENN-LRK--IHNDFFQF-------MPSLKVLNLSHCELTKLPV-- 247 (562)
Q Consensus 182 ~~~~l~~L~l~~~~~~~-l~-~~~~~~~L~~L~l~~~~-l~~--~~~~~~~~-------l~~L~~L~l~~~~~~~lp~-- 247 (562)
.+++++.|++.+|.+.. +| .+..+++|++|++++|. ++. +|.. ++. +++|++|++++|.++.+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCCBCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCcCCccCChh
Confidence 78999999999987543 44 57889999999999997 775 5543 444 4599999999999999998
Q ss_pred ccCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCC-CCEEEecCCCccchhcccccc---
Q 046723 248 GISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSR-LQVLRMFGASHKAIKEASENS--- 323 (562)
Q Consensus 248 ~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~--- 323 (562)
.++++++|++|++++|.+..+| .++.+++|+.|++++| .+..+|.. +.++++ |++|++.+|.+..++......
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN-QIEEIPED-FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSS-CCSCCCTT-SCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred hhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCC-ccccchHH-HhhccccCCEEECcCCCCCcCchhhhccccC
Confidence 8999999999999999999888 8899999999999988 46688877 788888 999999998876432111100
Q ss_pred ----cccCCc------ccchhhhc--CccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhh-----
Q 046723 324 ----ILFGGG------ELIVEELL--GLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSA----- 386 (562)
Q Consensus 324 ----~~~~~~------~~~~~~l~--~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~----- 386 (562)
.....+ ......+. .+.+|+.|+++.+....++.... ..+++|+.|+++++... ..+...
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~--~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~ 721 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF--ATGSPISTIILSNNLMT-SIPENSLKPKD 721 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH--HTTCCCSEEECCSCCCS-CCCTTSSSCTT
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHH--ccCCCCCEEECCCCcCC-ccChHHhcccc
Confidence 000000 01111222 33489999999888887664332 22348999999987544 333221
Q ss_pred --hhhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCCc-cccccCCCceEEEecCc------ch
Q 046723 387 --LAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLT-FLVFAPNLKSIKVGICH------AM 457 (562)
Q Consensus 387 --l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~------~l 457 (562)
+.++++|+.|+++++ .+..++..... ..+++|+.|+|++| .++.+| .+..+++|+.|+|+++. ..
T Consensus 722 ~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~----~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFN-KLTSLSDDFRA----TTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp SCCTTGGGCCEEECCSS-CCCCCCGGGST----TTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred ccccccCCccEEECCCC-CCccchHHhhh----ccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCccccccc
Confidence 224559999999998 77777765540 12899999999999 566665 58899999999998744 22
Q ss_pred hhhhcCCCCCCccccccCCCCccccceeeccCCcCCcccCcCCCCCCCcceeeeccCCCC
Q 046723 458 EEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKSIYWKPLPFPHLKAMSFLHCKKL 517 (562)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~C~~L 517 (562)
..+| ..+..+++|+.|+|++|. +..+|... +++|+.|++++|+-.
T Consensus 796 ~~ip------------~~l~~L~~L~~L~Ls~N~-L~~Ip~~l--~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 796 RQWP------------TGITTCPSLIQLQIGSND-IRKVDEKL--TPQLYILDIADNPNI 840 (876)
T ss_dssp CCCC------------TTGGGCSSCCEEECCSSC-CCBCCSCC--CSSSCEEECCSCTTC
T ss_pred ccCh------------HHHhcCCCCCEEECCCCC-CCccCHhh--cCCCCEEECCCCCCC
Confidence 2222 256679999999999985 47787653 479999999999743
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=6.5e-22 Score=213.33 Aligned_cols=311 Identities=14% Similarity=0.188 Sum_probs=226.1
Q ss_pred ccccceEEecccccccc-CC-CCCCCccccEEEccccC-ccc--cchhhhcCC------CCCcEEEecCCCCcccCc--c
Q 046723 182 GWEKARRLSLMQNQIRN-LS-EIPTCPHLLTLFLNENN-LRK--IHNDFFQFM------PSLKVLNLSHCELTKLPV--G 248 (562)
Q Consensus 182 ~~~~l~~L~l~~~~~~~-l~-~~~~~~~L~~L~l~~~~-l~~--~~~~~~~~l------~~L~~L~l~~~~~~~lp~--~ 248 (562)
.+++++.|++.+|.+.. +| .+.++++|++|++++|. ++. +|.. ++.+ ++|++|++++|.++.+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLKTFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCCccCchhh
Confidence 68899999999988654 34 57889999999999987 775 5544 5554 899999999998888888 8
Q ss_pred cCCcccCcEEeCCCCCcc-ccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCC-CCEEEecCCCccchhcccccc---
Q 046723 249 ISELVSLQHLDLSESDIE-ELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSR-LQVLRMFGASHKAIKEASENS--- 323 (562)
Q Consensus 249 ~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~--- 323 (562)
++++++|++|++++|.+. .+| .++.+++|++|++++| .+..+|.. +.++++ |++|++++|....++......
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~ 402 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPAN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTT-SEEECTTCCEEECCSSCCSSCCSCCCTTCSS
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHh-hhhhcccCcEEEccCCcCcccchhhhhcccC
Confidence 899999999999999888 888 8888888999999887 56678876 778888 888888888766432211100
Q ss_pred ----cccCC---cccchhhhc-------CccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhh-
Q 046723 324 ----ILFGG---GELIVEELL-------GLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALA- 388 (562)
Q Consensus 324 ----~~~~~---~~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~- 388 (562)
..... ....+..+. .+.+|+.|+++.+....++.... ...++|+.|+++++... ..+...+.
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~l~~L~~L~Ls~N~l~-~i~~~~~~~ 479 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF--STGSPLSSINLMGNMLT-EIPKNSLKD 479 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHH--HTTCCCSEEECCSSCCS-BCCSSSSEE
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHH--ccCCCCCEEECCCCCCC-CcCHHHhcc
Confidence 00111 112233444 67799999999988876654221 22348999999997654 44322222
Q ss_pred ------hhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCCc-cccccCCCceEEEecCc------
Q 046723 389 ------YLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLT-FLVFAPNLKSIKVGICH------ 455 (562)
Q Consensus 389 ------~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~------ 455 (562)
.+++|+.|+++++ .+..++..+.. ..+++|+.|+++++ .++.+| .+..+++|++|+|+++.
T Consensus 480 ~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~----~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 480 ENENFKNTYLLTSIDLRFN-KLTKLSDDFRA----TTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp TTEECTTGGGCCEEECCSS-CCCBCCGGGST----TTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCB
T ss_pred ccccccccCCccEEECcCC-cCCccChhhhh----ccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCc
Confidence 3349999999988 67777765540 12899999999999 566654 58899999999997643
Q ss_pred chhhhhcCCCCCCccccccCCCCccccceeeccCCcCCcccCcCCCCCCCcceeeeccCCCCcccc
Q 046723 456 AMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKSIYWKPLPFPHLKAMSFLHCKKLKKLP 521 (562)
Q Consensus 456 ~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~C~~L~~lp 521 (562)
....+| ..+..+++|+.|+++++.- ..++... +++|+.|++++|+ +.+++
T Consensus 554 l~~~~p------------~~l~~l~~L~~L~Ls~N~l-~~ip~~~--~~~L~~L~Ls~N~-l~~~~ 603 (636)
T 4eco_A 554 TLREWP------------EGITLCPSLTQLQIGSNDI-RKVNEKI--TPNISVLDIKDNP-NISID 603 (636)
T ss_dssp CCCCCC------------TTGGGCSSCCEEECCSSCC-CBCCSCC--CTTCCEEECCSCT-TCEEE
T ss_pred ccccCh------------HHHhcCCCCCEEECCCCcC-CccCHhH--hCcCCEEECcCCC-Ccccc
Confidence 222222 2556799999999999864 7777653 3899999999986 44444
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=6.9e-21 Score=201.04 Aligned_cols=124 Identities=20% Similarity=0.257 Sum_probs=110.1
Q ss_pred eEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCccc-CcccCCcccCcEEeCCCCCc
Q 046723 187 RRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKL-PVGISELVSLQHLDLSESDI 265 (562)
Q Consensus 187 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~l 265 (562)
++++++++.++.+|.--. ++|++|++++|.++.+++..+..+++|++|++++|.++.+ |..++++++|++|++++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 679999999999875322 8999999999999999888899999999999999999977 77899999999999999999
Q ss_pred cccchhhhCCCCCcEEeccCcCCCCc--cchhhhcCCCCCCEEEecCCCccc
Q 046723 266 EELPGELKALVNLKCLDLEYTGNLIT--IPRQLISNLSRLQVLRMFGASHKA 315 (562)
Q Consensus 266 ~~lp~~~~~l~~L~~L~l~~~~~l~~--~p~~~~~~l~~L~~L~l~~~~~~~ 315 (562)
+.+|.. .+++|++|++++|. +.. +|.. ++++++|++|++++|.+..
T Consensus 82 ~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~-~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 82 VKISCH--PTVNLKHLDLSFNA-FDALPICKE-FGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CEEECC--CCCCCSEEECCSSC-CSSCCCCGG-GGGCTTCCEEEEEESSCCG
T ss_pred eecCcc--ccCCccEEeccCCc-cccccchhh-hccCCcceEEEecCcccch
Confidence 999977 89999999999984 554 5555 8999999999999998754
No 33
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=3.5e-22 Score=220.38 Aligned_cols=336 Identities=18% Similarity=0.135 Sum_probs=217.1
Q ss_pred cEEEeecccccc-CCCccccccceEEeccccccccC--CCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCC
Q 046723 165 NFFVYAGVGLVR-APDVRGWEKARRLSLMQNQIRNL--SEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCE 241 (562)
Q Consensus 165 ~~~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~l--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 241 (562)
+.+...+..+.. .+.+..+++++.|++.+|.+... ..+..+++|++|++++|.+....+. ..+++|++|++++|.
T Consensus 203 ~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~L~~n~ 280 (768)
T 3rgz_A 203 EFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK 280 (768)
T ss_dssp CEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC--CCCTTCCEEECCSSE
T ss_pred CEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc--cccCCCCEEECcCCc
Confidence 444544444433 44577889999999999998753 3578899999999999988865553 278999999999998
Q ss_pred Cc-ccCcccCCc-ccCcEEeCCCCCcc-ccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccch-h
Q 046723 242 LT-KLPVGISEL-VSLQHLDLSESDIE-ELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAI-K 317 (562)
Q Consensus 242 ~~-~lp~~~~~l-~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~-~ 317 (562)
++ .+|..+..+ ++|++|++++|.+. .+|..++++++|++|++++|.....+|...+.++++|++|++.+|..... .
T Consensus 281 l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p 360 (768)
T 3rgz_A 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360 (768)
T ss_dssp EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC
T ss_pred cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcccc
Confidence 87 778888775 99999999999887 77888999999999999998544578877688999999999998876421 0
Q ss_pred cccc------cccccCC---cccchhhhcC--ccccceeeEEEecccc-hHHHHhhhhhhccccceeeccccCCCccchh
Q 046723 318 EASE------NSILFGG---GELIVEELLG--LKHLEVISLTLRNSHG-LQSFLRSWKLRRCTRALLLQCFNDSTLLEVS 385 (562)
Q Consensus 318 ~~~~------~~~~~~~---~~~~~~~l~~--l~~L~~L~l~~~~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 385 (562)
.... ....... ....+..+.. +++|+.|+++.+...+ .+... ..+++|+.|++++|......+ .
T Consensus 361 ~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p-~ 436 (768)
T 3rgz_A 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL---SNCSELVSLHLSFNYLSGTIP-S 436 (768)
T ss_dssp TTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG---GGCTTCCEEECCSSEEESCCC-G
T ss_pred HHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH---hcCCCCCEEECcCCcccCccc-H
Confidence 0000 0000000 0011222222 4455555555544432 22111 122366666666654332222 2
Q ss_pred hhhhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCC-ccccccCCCceEEEecCcchhhhhcCC
Q 046723 386 ALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDL-TFLVFAPNLKSIKVGICHAMEEIASEG 464 (562)
Q Consensus 386 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~c~~l~~l~~~~ 464 (562)
.+..+++|+.|++.++.-...++..+.. +++|++|++++|.....+ ..++.+++|++|+|++|.....+|.
T Consensus 437 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-- 508 (768)
T 3rgz_A 437 SLGSLSKLRDLKLWLNMLEGEIPQELMY------VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK-- 508 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGG------CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG--
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcC------CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh--
Confidence 3566667777777666333344433333 677777777777332233 3466777777777777664333332
Q ss_pred CCCCccccccCCCCccccceeeccCCcCCcccCcCCCCCCCcceeeeccCCCCccccCCC
Q 046723 465 KFAEVPEVMANLNPFEKLQNLEVAGARNLKSIYWKPLPFPHLKAMSFLHCKKLKKLPLDS 524 (562)
Q Consensus 465 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~ 524 (562)
.+..+++|+.|++++|.-...++.....+++|+.|++.+|+--..+|...
T Consensus 509 ----------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 509 ----------WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp ----------GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred ----------HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 44567788888888876555666666677888888888876555666543
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=6.1e-21 Score=208.25 Aligned_cols=279 Identities=21% Similarity=0.185 Sum_probs=175.2
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccCCC--CCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCC
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSE--IPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCEL 242 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 242 (562)
..+.+.+..+..+|... ..++++|++++|.+..++. +..+++|++|++++|.++.+++..++.+++|++|++++|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 34455555566665422 2689999999999988763 78899999999999999988888889999999999999999
Q ss_pred cccCc-ccCCcccCcEEeCCCCCccccc-hhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhccc
Q 046723 243 TKLPV-GISELVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEAS 320 (562)
Q Consensus 243 ~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 320 (562)
+.+|. .++++++|++|++++|.+..+| ..++++++|++|++++| .+...+...++++++|++|++.+|.........
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccccCHHH
Confidence 98876 5899999999999999998776 46889999999999998 455555444788999999999988765421110
Q ss_pred c--------cccccCC---cccchhhhcCccccceeeEEEecccch--HHHHhhhhhhccccceeeccccCCCccchhhh
Q 046723 321 E--------NSILFGG---GELIVEELLGLKHLEVISLTLRNSHGL--QSFLRSWKLRRCTRALLLQCFNDSTLLEVSAL 387 (562)
Q Consensus 321 ~--------~~~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 387 (562)
. ....... .......+..+.+|+.+.+..+..... ..+.... ...+|+.|+++++......+ ..+
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~-~~~ 242 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSN-TTF 242 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECT-TTT
T ss_pred hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccCh-hHh
Confidence 0 0000000 111122333344444443332222110 0000000 11366777776654332222 224
Q ss_pred hhhcc--cCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCC--ccccccCCCceEEEecC
Q 046723 388 AYLKQ--LNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDL--TFLVFAPNLKSIKVGIC 454 (562)
Q Consensus 388 ~~l~~--L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~c 454 (562)
..++. |+.|+++++ .+..++..... .+++|++|+++++ .+... ..+..+++|++|+++++
T Consensus 243 ~~l~~~~L~~L~Ls~n-~l~~~~~~~~~-----~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYN-NLNVVGNDSFA-----WLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp GGGGGSCCCEEECTTS-CCCEECTTTTT-----TCTTCCEEECCSC-CBSEECTTTTTTCTTCCEEECTTC
T ss_pred hccCcCCCCEEECCCC-CcCccCccccc-----CcccccEeeCCCC-ccCccChhhhcCCCCccEEeccch
Confidence 44433 777777766 44444433222 2667777777766 33332 23566666777666653
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.1e-21 Score=193.79 Aligned_cols=220 Identities=18% Similarity=0.278 Sum_probs=136.4
Q ss_pred CccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEEecc
Q 046723 205 CPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDLE 284 (562)
Q Consensus 205 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~ 284 (562)
..+++.|+++++.++.+|.. +..+++|++|++++|.++.+|..++++++|++|++++|.++.+|..++++++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 45677777777777777665 55678888888888877777877888888888888888777888778888888888888
Q ss_pred CcCCCCccchhhhc---------CCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEecccch
Q 046723 285 YTGNLITIPRQLIS---------NLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHGL 355 (562)
Q Consensus 285 ~~~~l~~~p~~~~~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 355 (562)
+|.....+|.. +. ++++|++|++.+|.+.. .+..++.+++|+.|+++.+....+
T Consensus 159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~----------------lp~~l~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIRS----------------LPASIANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCCC----------------CCGGGGGCTTCCEEEEESSCCCCC
T ss_pred CCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcCc----------------chHhhcCCCCCCEEEccCCCCCcC
Confidence 87777777764 32 36666666666665432 334455566666666655544433
Q ss_pred HHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCC
Q 046723 356 QSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLK 435 (562)
Q Consensus 356 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~ 435 (562)
+. .+..+++|+.|++++|.....++..+.. +++|++|+|++|....
T Consensus 222 ~~----------------------------~l~~l~~L~~L~Ls~n~~~~~~p~~~~~------l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 222 GP----------------------------AIHHLPKLEELDLRGCTALRNYPPIFGG------RAPLKRLILKDCSNLL 267 (328)
T ss_dssp CG----------------------------GGGGCTTCCEEECTTCTTCCBCCCCTTC------CCCCCEEECTTCTTCC
T ss_pred ch----------------------------hhccCCCCCEEECcCCcchhhhHHHhcC------CCCCCEEECCCCCchh
Confidence 22 2344455555555555444444433332 5556666665554444
Q ss_pred CCc-cccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeecc
Q 046723 436 DLT-FLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVA 488 (562)
Q Consensus 436 ~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 488 (562)
.+| .+..+++|++|+|++|..++.+|. .+..+++|+.+.+.
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~------------~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPS------------LIAQLPANCIILVP 309 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCCCCCG------------GGGGSCTTCEEECC
T ss_pred hcchhhhcCCCCCEEeCCCCCchhhccH------------HHhhccCceEEeCC
Confidence 443 355556666666666555555443 34455555555554
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=2.6e-20 Score=198.42 Aligned_cols=127 Identities=20% Similarity=0.321 Sum_probs=111.1
Q ss_pred cceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCccc-CcccCCcccCcEEeCCCC
Q 046723 185 KARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKL-PVGISELVSLQHLDLSES 263 (562)
Q Consensus 185 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~ 263 (562)
..++++++++.++.+|.-- .++|++|++++|.++.+++..|..+++|++|++++|.++.+ |..+.++++|++|++++|
T Consensus 32 ~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 4489999999999987522 38999999999999999987899999999999999999987 677999999999999999
Q ss_pred CccccchhhhCCCCCcEEeccCcCCCCccch-hhhcCCCCCCEEEecCCCccc
Q 046723 264 DIEELPGELKALVNLKCLDLEYTGNLITIPR-QLISNLSRLQVLRMFGASHKA 315 (562)
Q Consensus 264 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~-~~~~~l~~L~~L~l~~~~~~~ 315 (562)
.++.+|.. .+++|++|++++| .+..++. ..++++++|++|++++|.+..
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred cCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCcccc
Confidence 99999977 8999999999998 5666542 338999999999999987654
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=2.3e-20 Score=207.98 Aligned_cols=149 Identities=22% Similarity=0.269 Sum_probs=122.8
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccC--CCCCCCccccEEEccccC-ccccchhhhcCCCCCcEEEecCCC
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNL--SEIPTCPHLLTLFLNENN-LRKIHNDFFQFMPSLKVLNLSHCE 241 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l--~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~~~ 241 (562)
.........+..+|. -.++++.|++++|.++.+ ..+..+++|++|++++|. ...+++..|..+++|++|++++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 445556667777776 568999999999999886 368999999999999884 456666779999999999999999
Q ss_pred Cccc-CcccCCcccCcEEeCCCCCccc-cchh--hhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccc
Q 046723 242 LTKL-PVGISELVSLQHLDLSESDIEE-LPGE--LKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKA 315 (562)
Q Consensus 242 ~~~l-p~~~~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~ 315 (562)
+..+ |..++++++|++|++++|.+.. +|.. ++++++|++|++++|......+...++++++|++|++++|....
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9876 8899999999999999999885 5655 88999999999999844333343448999999999999987654
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=6.3e-21 Score=188.39 Aligned_cols=230 Identities=22% Similarity=0.321 Sum_probs=180.3
Q ss_pred CCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEE
Q 046723 228 FMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLR 307 (562)
Q Consensus 228 ~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~ 307 (562)
...++++|+++++.++.+|..++++++|++|++++|.++.+|..++++++|++|++++| .+..+|.. ++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCCEEE
Confidence 46889999999999999999999999999999999999999999999999999999998 66789877 89999999999
Q ss_pred ecCCCccch-hcccccccccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhh
Q 046723 308 MFGASHKAI-KEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSA 386 (562)
Q Consensus 308 l~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 386 (562)
+.+|..... ..... .......++.+++|+.|+++.+....+ + ..
T Consensus 157 L~~n~~~~~~p~~~~-------~~~~~~~~~~l~~L~~L~L~~n~l~~l---------------------------p-~~ 201 (328)
T 4fcg_A 157 IRACPELTELPEPLA-------STDASGEHQGLVNLQSLRLEWTGIRSL---------------------------P-AS 201 (328)
T ss_dssp EEEETTCCCCCSCSE-------EEC-CCCEEESTTCCEEEEEEECCCCC---------------------------C-GG
T ss_pred CCCCCCccccChhHh-------hccchhhhccCCCCCEEECcCCCcCcc---------------------------h-Hh
Confidence 999765431 00000 000111233455566655555433222 1 13
Q ss_pred hhhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCCc-cccccCCCceEEEecCcchhhhhcCCC
Q 046723 387 LAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLT-FLVFAPNLKSIKVGICHAMEEIASEGK 465 (562)
Q Consensus 387 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~ 465 (562)
+..+++|+.|+++++ .+..++..+.. +++|++|++++|.....++ .++.+++|++|+|++|.....+|.
T Consensus 202 l~~l~~L~~L~L~~N-~l~~l~~~l~~------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~--- 271 (328)
T 4fcg_A 202 IANLQNLKSLKIRNS-PLSALGPAIHH------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL--- 271 (328)
T ss_dssp GGGCTTCCEEEEESS-CCCCCCGGGGG------CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT---
T ss_pred hcCCCCCCEEEccCC-CCCcCchhhcc------CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch---
Confidence 677889999999887 66666655443 8999999999997666655 488999999999999988776654
Q ss_pred CCCccccccCCCCccccceeeccCCcCCcccCcCCCCCCCcceeeecc
Q 046723 466 FAEVPEVMANLNPFEKLQNLEVAGARNLKSIYWKPLPFPHLKAMSFLH 513 (562)
Q Consensus 466 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~ 513 (562)
.+..+++|+.|+|++|..+..+|.....+++|+.+.+..
T Consensus 272 ---------~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 272 ---------DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp ---------TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred ---------hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 467799999999999999999999888889999988774
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=3.5e-20 Score=202.28 Aligned_cols=150 Identities=23% Similarity=0.267 Sum_probs=114.4
Q ss_pred cEEEeeccccccCCC--ccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCC
Q 046723 165 NFFVYAGVGLVRAPD--VRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHC 240 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 240 (562)
+.+.+.+..+...+. +..++++++|++++|.+..+. .+..+++|++|++++|.++.+++..|..+++|++|++++|
T Consensus 28 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 107 (680)
T 1ziw_A 28 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107 (680)
T ss_dssp SEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred cEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC
Confidence 445555555554443 677788999999988887763 3577888999999988888888777888999999999998
Q ss_pred CCcccC-cccCCcccCcEEeCCCCCcccc-chhhhCCCCCcEEeccCcCCCCccchhhhc--CCCCCCEEEecCCCccc
Q 046723 241 ELTKLP-VGISELVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTGNLITIPRQLIS--NLSRLQVLRMFGASHKA 315 (562)
Q Consensus 241 ~~~~lp-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~--~l~~L~~L~l~~~~~~~ 315 (562)
.++.+| ..++++++|++|++++|.+... |..++++++|++|++++| .+..++...+. .+++|++|++++|....
T Consensus 108 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCCCcccc
Confidence 888775 5688889999999999888754 455778889999999887 45666554333 56788888888886654
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=8.5e-20 Score=203.47 Aligned_cols=175 Identities=19% Similarity=0.191 Sum_probs=135.8
Q ss_pred eEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCC-CCccc-CcccCCcccCcEEeCCCCC
Q 046723 187 RRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHC-ELTKL-PVGISELVSLQHLDLSESD 264 (562)
Q Consensus 187 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~-~~~~l-p~~~~~l~~L~~L~l~~~~ 264 (562)
+..+.+++.++.+|. ..+++++|++++|.++.+.+..|..+++|++|++++| .+..+ |..+.++++|++|++++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 456677788888887 5689999999999999887777999999999999999 45566 7889999999999999999
Q ss_pred cccc-chhhhCCCCCcEEeccCcCCCCccch-hhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCcccc
Q 046723 265 IEEL-PGELKALVNLKCLDLEYTGNLITIPR-QLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHL 342 (562)
Q Consensus 265 l~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 342 (562)
+..+ |..++++++|++|++++|.....+|. ..++++++|++|++++|.... ......++++++|
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~--------------~~~~~~~~~L~~L 150 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS--------------LYLHPSFGKLNSL 150 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC--------------CCCCGGGGTCSSC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc--------------cccchhHhhCCCC
Confidence 9866 77899999999999999854443443 347899999999999998763 1223568899999
Q ss_pred ceeeEEEecccchH-HHHhhhhhhccccceeeccccC
Q 046723 343 EVISLTLRNSHGLQ-SFLRSWKLRRCTRALLLQCFND 378 (562)
Q Consensus 343 ~~L~l~~~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~ 378 (562)
+.|+++.+...... ..+..... .+|+.|+++++..
T Consensus 151 ~~L~Ls~N~i~~~~~~~l~~l~~-~~L~~L~L~~n~l 186 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHELEPLQG-KTLSFFSLAANSL 186 (844)
T ss_dssp CEEEEESSCCCCCCSGGGHHHHH-CSSCCCEECCSBS
T ss_pred CEEECCCCcCCeeCHHHcccccC-CccceEECCCCcc
Confidence 99999987764431 11111110 3677777766543
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=5.1e-20 Score=199.23 Aligned_cols=143 Identities=24% Similarity=0.334 Sum_probs=101.8
Q ss_pred eeccccccCCCccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccC
Q 046723 169 YAGVGLVRAPDVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246 (562)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp 246 (562)
+.+.++..+|.-- ..++++|++++|.++.++ .|..+++|++|++++|.++.+++.+|..+++|++|+|++|+++.+|
T Consensus 38 c~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 38 CMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp CTTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence 3344444554311 246788888888887775 4677888888888888888887777788888888888888888776
Q ss_pred c-ccCCcccCcEEeCCCCCccccch-hhhCCCCCcEEeccCcCCCCc--cchhhhcCCCCCCEEEecCCCcc
Q 046723 247 V-GISELVSLQHLDLSESDIEELPG-ELKALVNLKCLDLEYTGNLIT--IPRQLISNLSRLQVLRMFGASHK 314 (562)
Q Consensus 247 ~-~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~--~p~~~~~~l~~L~~L~l~~~~~~ 314 (562)
. .|.++++|++|++++|.++.+|. .++++++|++|++++| .+.. +|.. ++.+++|++|++.+|.+.
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~-~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchh-hccchhhhhhcccCcccc
Confidence 4 46778888888888888877765 3677888888888877 3433 3333 677788888887776543
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=4.7e-20 Score=184.47 Aligned_cols=263 Identities=20% Similarity=0.216 Sum_probs=165.2
Q ss_pred eccccccCCCccccccceEEeccccccccCCC--CCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCc
Q 046723 170 AGVGLVRAPDVRGWEKARRLSLMQNQIRNLSE--IPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPV 247 (562)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~ 247 (562)
.+..+...|.. -.++++.|++++|.++.++. +..+++|++|++++|.++.+++..+..+++|++|++++|.++.+|.
T Consensus 39 ~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 117 (353)
T 2z80_A 39 SSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS 117 (353)
T ss_dssp CSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH
T ss_pred CCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH
Confidence 33444444431 22578888888888877654 6778888888888888887776667888888888888888887776
Q ss_pred c-cCCcccCcEEeCCCCCccccch--hhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhccccccc
Q 046723 248 G-ISELVSLQHLDLSESDIEELPG--ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSI 324 (562)
Q Consensus 248 ~-~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 324 (562)
. ++++++|++|++++|.++.+|. .+.++++|++|++++|..+..++...++++++|++|++.+|....
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--------- 188 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS--------- 188 (353)
T ss_dssp HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE---------
T ss_pred hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc---------
Confidence 5 7778888888888888887776 577788888888888765666665557778888888888776543
Q ss_pred ccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccc--hhhhhhhcccCeeeecccc
Q 046723 325 LFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLE--VSALAYLKQLNRLQIANSV 402 (562)
Q Consensus 325 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~ 402 (562)
..+..+..+++|+.|+++.+....++.... ...++|+.|+++++.-..... +........++.+.+.++
T Consensus 189 ------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~- 259 (353)
T 2z80_A 189 ------YEPKSLKSIQNVSHLILHMKQHILLLEIFV--DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV- 259 (353)
T ss_dssp ------ECTTTTTTCSEEEEEEEECSCSTTHHHHHH--HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC-
T ss_pred ------cCHHHHhccccCCeecCCCCccccchhhhh--hhcccccEEECCCCccccccccccccccccchhhccccccc-
Confidence 235567777888888888777665554321 123467777777654322111 111223344555555443
Q ss_pred ccceeeccchhhhh--hhhhccccEEEEecCCCCCCCcc--ccccCCCceEEEecCc
Q 046723 403 ILEELKMDYAEEVQ--QFAFRSLNMVEICNCIKLKDLTF--LVFAPNLKSIKVGICH 455 (562)
Q Consensus 403 ~l~~l~~~~~~~~~--~~~~~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~ 455 (562)
.+...... .++ ...+++|+.|+++++ .++.++. ++.+++|++|++++++
T Consensus 260 ~l~~~~l~---~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 260 KITDESLF---QVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp BCCHHHHH---HHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCcchh---hhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 22111000 000 022556666666666 4445443 3556666666666554
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=1e-19 Score=182.06 Aligned_cols=266 Identities=20% Similarity=0.196 Sum_probs=178.0
Q ss_pred eEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCccc-CcccCCcccCcEEeCCCCCc
Q 046723 187 RRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKL-PVGISELVSLQHLDLSESDI 265 (562)
Q Consensus 187 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~l 265 (562)
...+.+++.++.+|. .-.++|++|++++|.++.++...+..+++|++|++++|.++.+ |..+.++++|++|++++|.+
T Consensus 34 ~~c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 34 GICKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp SEEECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eEeeCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 346777788888775 2236899999999999998887789999999999999999877 45689999999999999999
Q ss_pred cccchh-hhCCCCCcEEeccCcCCCCccch-hhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccc
Q 046723 266 EELPGE-LKALVNLKCLDLEYTGNLITIPR-QLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLE 343 (562)
Q Consensus 266 ~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (562)
+.+|.. ++++++|++|++++| .+..+|. ..+.++++|++|++.+|... .......+..+++|+
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~--------------~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTF--------------TKIQRKDFAGLTFLE 177 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSC--------------CEECTTTTTTCCEEE
T ss_pred CcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccc--------------cccCHHHccCCCCCC
Confidence 988876 788999999999988 6777876 45788999999999988422 112345677788888
Q ss_pred eeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccc
Q 046723 344 VISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSL 423 (562)
Q Consensus 344 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L 423 (562)
.|+++.+...... ...+..+++|+.|++.++ .+..++.... ..+++|
T Consensus 178 ~L~l~~n~l~~~~---------------------------~~~l~~l~~L~~L~l~~n-~l~~~~~~~~-----~~~~~L 224 (353)
T 2z80_A 178 ELEIDASDLQSYE---------------------------PKSLKSIQNVSHLILHMK-QHILLLEIFV-----DVTSSV 224 (353)
T ss_dssp EEEEEETTCCEEC---------------------------TTTTTTCSEEEEEEEECS-CSTTHHHHHH-----HHTTTE
T ss_pred EEECCCCCcCccC---------------------------HHHHhccccCCeecCCCC-ccccchhhhh-----hhcccc
Confidence 8888876554331 112344555555555554 2333222211 124566
Q ss_pred cEEEEecCCCCCCCc-----cccccCCCceEEEecCcc----hhhhhcCCCCCCccccccCCCCccccceeeccCCcCCc
Q 046723 424 NMVEICNCIKLKDLT-----FLVFAPNLKSIKVGICHA----MEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLK 494 (562)
Q Consensus 424 ~~L~L~~c~~l~~l~-----~l~~l~~L~~L~L~~c~~----l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 494 (562)
+.|+++++ .++.++ .....+.++.++++++.. +..++. .+..+++|+.|+++++ .+.
T Consensus 225 ~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~------------~l~~l~~L~~L~Ls~N-~l~ 290 (353)
T 2z80_A 225 ECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK------------LLNQISGLLELEFSRN-QLK 290 (353)
T ss_dssp EEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH------------HHHTCTTCCEEECCSS-CCC
T ss_pred cEEECCCC-ccccccccccccccccchhhccccccccccCcchhhhHH------------HHhcccCCCEEECCCC-CCC
Confidence 66666665 333321 122345566666665432 112221 3345677777777776 455
Q ss_pred ccCcCC-CCCCCcceeeeccCC
Q 046723 495 SIYWKP-LPFPHLKAMSFLHCK 515 (562)
Q Consensus 495 ~~~~~~-~~~~~L~~L~i~~C~ 515 (562)
.++... ..+++|++|++.+++
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCHHHHhcCCCCCEEEeeCCC
Confidence 666553 466777777777764
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=9.5e-20 Score=180.65 Aligned_cols=282 Identities=19% Similarity=0.276 Sum_probs=208.6
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCC
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCEL 242 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 242 (562)
+.+.+.+..+...|... .++++.|++.+|.+..++ .+..+++|++|++++|.++.+++..+..+++|++|++++|.+
T Consensus 36 ~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 114 (332)
T 2ft3_A 36 RVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114 (332)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC
T ss_pred CEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC
Confidence 33444555555555422 368999999999998874 588999999999999999998777799999999999999999
Q ss_pred cccCcccCCcccCcEEeCCCCCccccchh-hhCCCCCcEEeccCcCCCCc--cchhhhcCCCCCCEEEecCCCccchhcc
Q 046723 243 TKLPVGISELVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTGNLIT--IPRQLISNLSRLQVLRMFGASHKAIKEA 319 (562)
Q Consensus 243 ~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~--~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 319 (562)
+.+|..+. ++|++|++++|.+..+|.. +..+++|++|++++|. +.. ++...+..+ +|++|++.+|....
T Consensus 115 ~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~---- 186 (332)
T 2ft3_A 115 VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTG---- 186 (332)
T ss_dssp CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSS----
T ss_pred CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCc----
Confidence 99998776 8999999999999988764 7899999999999984 432 333336667 99999999987663
Q ss_pred cccccccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeec
Q 046723 320 SENSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIA 399 (562)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 399 (562)
.+..+. ++|+.|+++.+....... ......++|+.|+++++.... .+...+..+++|+.|++.
T Consensus 187 ------------l~~~~~--~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 187 ------------IPKDLP--ETLNELHLDHNKIQAIEL--EDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLD 249 (332)
T ss_dssp ------------CCSSSC--SSCSCCBCCSSCCCCCCT--TSSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECC
T ss_pred ------------cCcccc--CCCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECC
Confidence 122222 688889998887766541 112223489999999875433 333357889999999999
Q ss_pred cccccceeeccchhhhhhhhhccccEEEEecCCCCCCCcc--cc------ccCCCceEEEecCcchh-hhhcCCCCCCcc
Q 046723 400 NSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLTF--LV------FAPNLKSIKVGICHAME-EIASEGKFAEVP 470 (562)
Q Consensus 400 ~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~--l~------~l~~L~~L~L~~c~~l~-~l~~~~~~~~~~ 470 (562)
++ .+..++..+.. +++|+.|+++++ .++.++. +. ..++|+.|++.+++... .++.
T Consensus 250 ~N-~l~~lp~~l~~------l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~-------- 313 (332)
T 2ft3_A 250 NN-KLSRVPAGLPD------LKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP-------- 313 (332)
T ss_dssp SS-CCCBCCTTGGG------CTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG--------
T ss_pred CC-cCeecChhhhc------CccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCc--------
Confidence 88 77777766544 899999999998 5666532 22 25789999999976421 1111
Q ss_pred ccccCCCCccccceeeccCCc
Q 046723 471 EVMANLNPFEKLQNLEVAGAR 491 (562)
Q Consensus 471 ~~~~~~~~~~~L~~L~l~~c~ 491 (562)
.....+++|+.++++++.
T Consensus 314 ---~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 314 ---ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ---GGGTTBCCSTTEEC----
T ss_pred ---ccccccchhhhhhccccc
Confidence 234568889999988764
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=1.4e-20 Score=184.80 Aligned_cols=246 Identities=18% Similarity=0.197 Sum_probs=152.0
Q ss_pred ccceEEecccccccc---C-CCCCCCccccEEEccc-cCccccchhhhcCCCCCcEEEecCCCCc-ccCcccCCcccCcE
Q 046723 184 EKARRLSLMQNQIRN---L-SEIPTCPHLLTLFLNE-NNLRKIHNDFFQFMPSLKVLNLSHCELT-KLPVGISELVSLQH 257 (562)
Q Consensus 184 ~~l~~L~l~~~~~~~---l-~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~ 257 (562)
.+++.|++.++.+.. + +.+..+++|++|++++ +.+....+..+..+++|++|++++|.++ .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467777777777763 3 3466777777777773 6666444444777777777777777776 66777777777777
Q ss_pred EeCCCCCcc-ccchhhhCCCCCcEEeccCcCCCCccchhhhcCCC-CCCEEEecCCCccchhcccccccccCCcccchhh
Q 046723 258 LDLSESDIE-ELPGELKALVNLKCLDLEYTGNLITIPRQLISNLS-RLQVLRMFGASHKAIKEASENSILFGGGELIVEE 335 (562)
Q Consensus 258 L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (562)
|++++|.+. .+|..++.+++|++|++++|.....+|.. +++++ +|++|++.+|.... ..+..
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~---------------~~~~~ 193 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTG---------------KIPPT 193 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEE---------------ECCGG
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeec---------------cCChH
Confidence 777777776 66777777777777777777433356655 66666 77777777765442 12333
Q ss_pred hcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhh
Q 046723 336 LLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEV 415 (562)
Q Consensus 336 l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 415 (562)
+..++ |+.|+++.+... ... ...+..+++|+.|++.++ .+.........
T Consensus 194 ~~~l~-L~~L~Ls~N~l~--------------------------~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-- 242 (313)
T 1ogq_A 194 FANLN-LAFVDLSRNMLE--------------------------GDA-SVLFGSDKNTQKIHLAKN-SLAFDLGKVGL-- 242 (313)
T ss_dssp GGGCC-CSEEECCSSEEE--------------------------ECC-GGGCCTTSCCSEEECCSS-EECCBGGGCCC--
T ss_pred HhCCc-ccEEECcCCccc--------------------------CcC-CHHHhcCCCCCEEECCCC-ceeeecCcccc--
Confidence 33333 444444332211 111 123556777888888776 33322222222
Q ss_pred hhhhhccccEEEEecCCCCC-CC-ccccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCcCC
Q 046723 416 QQFAFRSLNMVEICNCIKLK-DL-TFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNL 493 (562)
Q Consensus 416 ~~~~~~~L~~L~L~~c~~l~-~l-~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L 493 (562)
+++|++|+++++ .+. .+ ..+..+++|++|+++++.....+|. ...+++|+.|++.+++.+
T Consensus 243 ----l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-------------~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 243 ----SKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-------------GGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ----CTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECCC-------------STTGGGSCGGGTCSSSEE
T ss_pred ----cCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCCC-------------CccccccChHHhcCCCCc
Confidence 677888888777 344 33 3467777777777777654333332 245677777777766544
Q ss_pred c
Q 046723 494 K 494 (562)
Q Consensus 494 ~ 494 (562)
.
T Consensus 305 c 305 (313)
T 1ogq_A 305 C 305 (313)
T ss_dssp E
T ss_pred c
Confidence 4
No 46
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=4e-21 Score=189.15 Aligned_cols=285 Identities=15% Similarity=0.118 Sum_probs=175.7
Q ss_pred ceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCC
Q 046723 186 ARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSES 263 (562)
Q Consensus 186 l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~ 263 (562)
++..++..+.+.... .+..+++|++|++++|.++.+++..+..+++|++|++++|.++..+. +..+++|++|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence 344455555544321 13566789999999999988887778899999999999998887665 888999999999999
Q ss_pred CccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccc
Q 046723 264 DIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLE 343 (562)
Q Consensus 264 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (562)
.++.+|. .++|++|++++| .+..++. ..+++|++|++.+|.... .....+..+++|+
T Consensus 91 ~l~~l~~----~~~L~~L~l~~n-~l~~~~~---~~~~~L~~L~l~~N~l~~---------------~~~~~~~~l~~L~ 147 (317)
T 3o53_A 91 YVQELLV----GPSIETLHAANN-NISRVSC---SRGQGKKNIYLANNKITM---------------LRDLDEGCRSRVQ 147 (317)
T ss_dssp EEEEEEE----CTTCCEEECCSS-CCSEEEE---CCCSSCEEEECCSSCCCS---------------GGGBCTGGGSSEE
T ss_pred ccccccC----CCCcCEEECCCC-ccCCcCc---cccCCCCEEECCCCCCCC---------------ccchhhhccCCCC
Confidence 8887763 378999999987 5666664 347889999999887653 1233456677777
Q ss_pred eeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccc
Q 046723 344 VISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSL 423 (562)
Q Consensus 344 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L 423 (562)
.|+++.+........ ......++|++|+++++...... ....+++|+.|+++++ .+..++..+.. +++|
T Consensus 148 ~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~l~~L~~L~Ls~N-~l~~l~~~~~~------l~~L 216 (317)
T 3o53_A 148 YLDLKLNEIDTVNFA-ELAASSDTLEHLNLQYNFIYDVK---GQVVFAKLKTLDLSSN-KLAFMGPEFQS------AAGV 216 (317)
T ss_dssp EEECTTSCCCEEEGG-GGGGGTTTCCEEECTTSCCCEEE---CCCCCTTCCEEECCSS-CCCEECGGGGG------GTTC
T ss_pred EEECCCCCCCcccHH-HHhhccCcCCEEECCCCcCcccc---cccccccCCEEECCCC-cCCcchhhhcc------cCcc
Confidence 777776665543210 00111236666666665433221 1334566666766665 55555544332 5666
Q ss_pred cEEEEecCCCCCCCc-cccccCCCceEEEecCcch-hhhhcCCCCCCccccccCCCCccccceeeccCCcCCcccCcCCC
Q 046723 424 NMVEICNCIKLKDLT-FLVFAPNLKSIKVGICHAM-EEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKSIYWKPL 501 (562)
Q Consensus 424 ~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l-~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 501 (562)
+.|+++++ .++.++ .+..+++|+.|++++++.. ..++. ....+++|+.|++.++..++.......
T Consensus 217 ~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~------------~~~~~~~L~~l~l~~~~~l~~~~~~~~ 283 (317)
T 3o53_A 217 TWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD------------FFSKNQRVQTVAKQTVKKLTGQNEEEC 283 (317)
T ss_dssp SEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHH------------HHHTCHHHHHHHHHHHHHHHSSSSCCC
T ss_pred cEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHH------------HHhccccceEEECCCchhccCCchhcc
Confidence 77776666 444433 3556666666666665433 12211 233456666666665555554433333
Q ss_pred CCCCcceeeeccCCCCc
Q 046723 502 PFPHLKAMSFLHCKKLK 518 (562)
Q Consensus 502 ~~~~L~~L~i~~C~~L~ 518 (562)
..+.+....-..|..|.
T Consensus 284 ~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 284 TVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp SSTTCEEETTEEEBCCT
T ss_pred CCCceecccceeeccCC
Confidence 33444444444454443
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=4.6e-19 Score=175.54 Aligned_cols=281 Identities=19% Similarity=0.219 Sum_probs=207.4
Q ss_pred EEEeeccccccCCCccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCc
Q 046723 166 FFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELT 243 (562)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 243 (562)
.+.+.+......|.. -.++++.|++++|.++.++ .+..+++|++|++++|.++.+.+..+..+++|++|++++|.++
T Consensus 35 ~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (330)
T 1xku_A 35 VVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113 (330)
T ss_dssp EEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS
T ss_pred EEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC
Confidence 344444455555432 2368999999999999886 4789999999999999999987777999999999999999999
Q ss_pred ccCcccCCcccCcEEeCCCCCccccch-hhhCCCCCcEEeccCcCCCCc--cchhhhcCCCCCCEEEecCCCccchhccc
Q 046723 244 KLPVGISELVSLQHLDLSESDIEELPG-ELKALVNLKCLDLEYTGNLIT--IPRQLISNLSRLQVLRMFGASHKAIKEAS 320 (562)
Q Consensus 244 ~lp~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~--~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 320 (562)
.+|..+. ++|++|++++|.+..++. .+.++++|++|++++|. +.. +....+.++++|++|++.+|....+
T Consensus 114 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l---- 186 (330)
T 1xku_A 114 ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTI---- 186 (330)
T ss_dssp BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSC----
T ss_pred ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccC----
Confidence 9988775 799999999999997765 47899999999999984 432 3334488999999999999976631
Q ss_pred ccccccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeecc
Q 046723 321 ENSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIAN 400 (562)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 400 (562)
+..+ .++|+.|+++.+....... ......++|+.|+++++... ..+...+..+++|+.|++++
T Consensus 187 ------------~~~~--~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 187 ------------PQGL--PPSLTELHLDGNKITKVDA--ASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp ------------CSSC--CTTCSEEECTTSCCCEECT--GGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCCEEECCS
T ss_pred ------------Cccc--cccCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCCcCc-eeChhhccCCCCCCEEECCC
Confidence 1122 2688999988877665521 11222348999999987643 33333578899999999999
Q ss_pred ccccceeeccchhhhhhhhhccccEEEEecCCCCCCCcc--c------cccCCCceEEEecCcchh-hhhcCCCCCCccc
Q 046723 401 SVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLTF--L------VFAPNLKSIKVGICHAME-EIASEGKFAEVPE 471 (562)
Q Consensus 401 ~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~--l------~~l~~L~~L~L~~c~~l~-~l~~~~~~~~~~~ 471 (562)
+ .+..++..... +++|++|+++++ .++.++. + ...++|+.|++.+++... .++.
T Consensus 250 N-~l~~lp~~l~~------l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~--------- 312 (330)
T 1xku_A 250 N-KLVKVPGGLAD------HKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP--------- 312 (330)
T ss_dssp S-CCSSCCTTTTT------CSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG---------
T ss_pred C-cCccCChhhcc------CCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCc---------
Confidence 8 77777766544 899999999999 5666542 2 135889999999876321 1111
Q ss_pred cccCCCCccccceeeccCC
Q 046723 472 VMANLNPFEKLQNLEVAGA 490 (562)
Q Consensus 472 ~~~~~~~~~~L~~L~l~~c 490 (562)
.....+++|+.++++++
T Consensus 313 --~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 313 --STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp --GGGTTCCCGGGEEC---
T ss_pred --cccccccceeEEEeccc
Confidence 23455778888888764
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=1.1e-20 Score=185.44 Aligned_cols=242 Identities=16% Similarity=0.161 Sum_probs=177.9
Q ss_pred cEEEeecccccc----CCCccccccceEEeccc-ccccc-CC-CCCCCccccEEEccccCccccchhhhcCCCCCcEEEe
Q 046723 165 NFFVYAGVGLVR----APDVRGWEKARRLSLMQ-NQIRN-LS-EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNL 237 (562)
Q Consensus 165 ~~~~~~~~~~~~----~~~~~~~~~l~~L~l~~-~~~~~-l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 237 (562)
..+...+..+.. .+.+..+++++.|++++ |.+.. ++ .+..+++|++|++++|.++...+..+..+++|++|++
T Consensus 53 ~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 132 (313)
T 1ogq_A 53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132 (313)
T ss_dssp EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC
T ss_pred EEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeC
Confidence 334445544432 34578889999999995 77763 44 5789999999999999998555555899999999999
Q ss_pred cCCCCc-ccCcccCCcccCcEEeCCCCCcc-ccchhhhCCC-CCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCcc
Q 046723 238 SHCELT-KLPVGISELVSLQHLDLSESDIE-ELPGELKALV-NLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHK 314 (562)
Q Consensus 238 ~~~~~~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~-~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 314 (562)
++|.++ .+|..+..+++|++|++++|.++ .+|..++.++ +|++|++++|.....+|.. +..++ |++|++++|...
T Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCSSEEE
T ss_pred CCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcCCccc
Confidence 999988 78999999999999999999998 8999999998 9999999998544466765 77787 999999999765
Q ss_pred chhcccccccccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccC
Q 046723 315 AIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLN 394 (562)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 394 (562)
. ..+..+..+++|+.|+++.+...... + .+..+++|+
T Consensus 211 ~---------------~~~~~~~~l~~L~~L~L~~N~l~~~~--------------------------~--~~~~l~~L~ 247 (313)
T 1ogq_A 211 G---------------DASVLFGSDKNTQKIHLAKNSLAFDL--------------------------G--KVGLSKNLN 247 (313)
T ss_dssp E---------------CCGGGCCTTSCCSEEECCSSEECCBG--------------------------G--GCCCCTTCC
T ss_pred C---------------cCCHHHhcCCCCCEEECCCCceeeec--------------------------C--cccccCCCC
Confidence 3 24556777888888877765543211 1 133456777
Q ss_pred eeeeccccccc-eeeccchhhhhhhhhccccEEEEecCCCCCCCccccccCCCceEEEecCcchh
Q 046723 395 RLQIANSVILE-ELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLTFLVFAPNLKSIKVGICHAME 458 (562)
Q Consensus 395 ~L~l~~~~~l~-~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~ 458 (562)
.|+++++ .+. .++..+.. +++|+.|+++++.....+|..+.+++|+.|++.+++.+.
T Consensus 248 ~L~Ls~N-~l~~~~p~~l~~------l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 248 GLDLRNN-RIYGTLPQGLTQ------LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EEECCSS-CCEECCCGGGGG------CTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred EEECcCC-cccCcCChHHhc------CcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 7777766 333 34433333 677777777777322245556677777777777766443
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=3.6e-19 Score=183.61 Aligned_cols=134 Identities=25% Similarity=0.345 Sum_probs=74.4
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcc
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTK 244 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 244 (562)
+.+......+...+.. ..+++.|++++|.+..++.+. ++|++|++++|.++.+| . ++.+++|++|++++|+++.
T Consensus 94 ~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N~l~~ 167 (454)
T 1jl5_A 94 ESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNNSLKK 167 (454)
T ss_dssp SEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSSCCSC
T ss_pred CEEEccCCcCCccccc--cCCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCCcCcc
Confidence 3344444444443322 255666666666665554332 46666666666666655 2 5666666666666666666
Q ss_pred cCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCc
Q 046723 245 LPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASH 313 (562)
Q Consensus 245 lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~ 313 (562)
+|..+ .+|++|++++|.++.+| .++.+++|++|++++| .+..+|.. .++|++|++.+|..
T Consensus 168 lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 168 LPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN-SLKKLPDL----PLSLESIVAGNNIL 227 (454)
T ss_dssp CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCCC----CTTCCEEECCSSCC
T ss_pred cCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCC-cCCcCCCC----cCcccEEECcCCcC
Confidence 55433 35666666666666655 4566666666666665 34444431 23566666665544
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=2.9e-19 Score=190.03 Aligned_cols=253 Identities=19% Similarity=0.210 Sum_probs=148.9
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcc
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTK 244 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 244 (562)
..+.+.+..+..+|.... ++++.|++.+|.++.++. .+++|++|++++|.++.++. .+++|++|++++|+++.
T Consensus 43 ~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 43 AVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp CEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCC
T ss_pred cEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCC
Confidence 455555555555554222 567777777777776665 46677777777777766654 46777777777777776
Q ss_pred cCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhccccccc
Q 046723 245 LPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSI 324 (562)
Q Consensus 245 lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 324 (562)
+|. .+.+|++|++++|.++.+|.. +++|++|++++| .+..+|. .+++|+.|++.+|.+..
T Consensus 116 l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~--------- 175 (622)
T 3g06_A 116 LPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTS--------- 175 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSC---------
T ss_pred CCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCC---------
Confidence 665 456677777777777766653 366777777766 5555553 24566777777665542
Q ss_pred ccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeecccccc
Q 046723 325 LFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVIL 404 (562)
Q Consensus 325 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 404 (562)
++ ..+++|+.|+++.+....++.. ..+|+.|++++|.... .+ ..+++|+.|+++++ .+
T Consensus 176 -------l~---~~~~~L~~L~Ls~N~l~~l~~~------~~~L~~L~L~~N~l~~-l~----~~~~~L~~L~Ls~N-~L 233 (622)
T 3g06_A 176 -------LP---MLPSGLQELSVSDNQLASLPTL------PSELYKLWAYNNRLTS-LP----ALPSGLKELIVSGN-RL 233 (622)
T ss_dssp -------CC---CCCTTCCEEECCSSCCSCCCCC------CTTCCEEECCSSCCSS-CC----CCCTTCCEEECCSS-CC
T ss_pred -------Cc---ccCCCCcEEECCCCCCCCCCCc------cchhhEEECcCCcccc-cC----CCCCCCCEEEccCC-cc
Confidence 11 3346666666666665554321 1366666666654322 21 12356666666655 45
Q ss_pred ceeeccchhhhhhhhhccccEEEEecCCCCCCCccccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccce
Q 046723 405 EELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQN 484 (562)
Q Consensus 405 ~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~ 484 (562)
..++ . .+++|+.|+++++ .++.++. .+++|+.|+|++|. ++.+|. .+..+++|+.
T Consensus 234 ~~lp---~------~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N~-L~~lp~------------~l~~l~~L~~ 288 (622)
T 3g06_A 234 TSLP---V------LPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRNQ-LTRLPE------------SLIHLSSETT 288 (622)
T ss_dssp SCCC---C------CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CCSCCG------------GGGGSCTTCE
T ss_pred CcCC---C------CCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCCC-CCcCCH------------HHhhccccCE
Confidence 4443 1 1456666666666 5555554 45666666666653 334432 3445666666
Q ss_pred eeccCCc
Q 046723 485 LEVAGAR 491 (562)
Q Consensus 485 L~l~~c~ 491 (562)
|++++++
T Consensus 289 L~L~~N~ 295 (622)
T 3g06_A 289 VNLEGNP 295 (622)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 6666654
No 51
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.81 E-value=1.6e-20 Score=198.38 Aligned_cols=143 Identities=15% Similarity=0.121 Sum_probs=113.6
Q ss_pred ChhHHHHHHHHHHHcCCchhHHHHHHHHhcCCCChhHHHHHHHHHhccCCCCCCCccchhhhhhhhccCCCchhhhhhhh
Q 046723 4 HPDILQLAQTAARECGGLPLALITIGRAMACKKTPEEWSYAIEVLRTSSSQFPGLGNEVYPLLKFSYDSLPSDTIRSCHL 83 (562)
Q Consensus 4 ~~~l~~i~~~i~~~c~GlPLai~~ig~~L~~~~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~sy~~L~~~~~k~cfl 83 (562)
++++++++++|+++|+|+||||+++|+.|+.+ + |+.+ +.+....+.. ...++..+|++||++||++ +|.||+
T Consensus 312 ~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l~~~--~~~~i~~~l~~Sy~~L~~~-lk~~f~ 383 (549)
T 2a5y_B 312 GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKLESR--GLVGVECITPYSYKSLAMA-LQRCVE 383 (549)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHHHHH--CSSTTCCCSSSSSSSHHHH-HHHHHH
T ss_pred chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHhhcc--cHHHHHHHHhcccccccHH-HHHHHh
Confidence 37899999999999999999999999999873 3 4433 3444332211 1247999999999999995 999999
Q ss_pred -----------hhcccCCCccccHHHHHHHHHHC--CCcccCC-CchhhHhhHHHHHHHHHhccccccC---CCcEEEch
Q 046723 84 -----------YCSLYPEDYCISKEKLIDCWIGE--RLLTERD-RTGEQKEGYHILGILLHACLLEEGG---GGEVKMHD 146 (562)
Q Consensus 84 -----------~~a~fp~~~~~~~~~Li~~wiae--g~~~~~~-~~~~~~~~~~~~~~L~~~~l~~~~~---~~~~~mhd 146 (562)
|||+||+++.+. +++|+|+ ||+.... +..+++.+. |+++|++++|++... ...|+|||
T Consensus 384 ~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHd 458 (549)
T 2a5y_B 384 VLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDH 458 (549)
T ss_dssp TSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCH
T ss_pred ccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeCh
Confidence 999999999999 8999999 9998855 666788888 999999999998763 45799999
Q ss_pred hHHHHHHHHhccc
Q 046723 147 VIRDMALWIACDI 159 (562)
Q Consensus 147 l~~~l~~~~~~~~ 159 (562)
++|++|+.++.++
T Consensus 459 lv~~~a~~~~~~~ 471 (549)
T 2a5y_B 459 IIHMFLKHVVDAQ 471 (549)
T ss_dssp HHHHHHHTTSCTH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888763
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=1.4e-18 Score=179.17 Aligned_cols=211 Identities=22% Similarity=0.266 Sum_probs=126.6
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcc
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTK 244 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 244 (562)
..+...+..+...+.. .++++.|++++|.++.++.. +++|++|++++|.++.++.. .++|++|++++|.++.
T Consensus 74 ~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~ 145 (454)
T 1jl5_A 74 HELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEK 145 (454)
T ss_dssp SEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSS
T ss_pred CEEEecCCccccCCCC--cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCC
Confidence 4455555555554443 35778888888877777643 47788888888877765431 2678888888887777
Q ss_pred cCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhccccc--
Q 046723 245 LPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASEN-- 322 (562)
Q Consensus 245 lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-- 322 (562)
+| .++++++|++|++++|.++.+|..+ .+|++|++++| .+..+|. ++++++|++|++.+|....+......
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~~~~L~ 218 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKKLPDLPLSLE 218 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcCCcCCCCcCccc
Confidence 77 5788888888888888777777543 47888888877 5666763 77788888888887766542211100
Q ss_pred ccccCC-cccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccc
Q 046723 323 SILFGG-GELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANS 401 (562)
Q Consensus 323 ~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 401 (562)
...... ....+..++.+++|+.|+++.+...+++.. ..+|+.|+++++.-.. .+ ..+++|+.|+++++
T Consensus 219 ~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~------~~~L~~L~l~~N~l~~-l~----~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 219 SIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL------PPSLEALNVRDNYLTD-LP----ELPQSLTFLDVSEN 287 (454)
T ss_dssp EEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSC------CTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSS
T ss_pred EEECcCCcCCcccccCCCCCCCEEECCCCcCCccccc------ccccCEEECCCCcccc-cC----cccCcCCEEECcCC
Confidence 000000 001122355666666666666555544321 1356666666554322 11 01245666666554
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=5.4e-19 Score=182.92 Aligned_cols=237 Identities=24% Similarity=0.271 Sum_probs=157.0
Q ss_pred EEeeccccccCCCccccccceEEeccccccccC--CCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcc
Q 046723 167 FVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNL--SEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTK 244 (562)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 244 (562)
+...+..+...|.. -..+++.|++++|.+..+ ..+..+++|++|++++|.++.+++..|..+++|++|++++|.++.
T Consensus 59 v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 137 (452)
T 3zyi_A 59 VVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137 (452)
T ss_dssp EECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB
T ss_pred EEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc
Confidence 33444444444431 225778888888877776 346777888888888888877776667778888888888887777
Q ss_pred cCcc-cCCcccCcEEeCCCCCccccch-hhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhccccc
Q 046723 245 LPVG-ISELVSLQHLDLSESDIEELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASEN 322 (562)
Q Consensus 245 lp~~-~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 322 (562)
+|.. +..+++|++|++++|.++.+|. .+.++++|++|++++|..+..++...+.++++|++|++++|.+..
T Consensus 138 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~------- 210 (452)
T 3zyi_A 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD------- 210 (452)
T ss_dssp CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-------
T ss_pred cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-------
Confidence 7554 6778888888888887777665 467778888888887777777777667778888888887776542
Q ss_pred ccccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeecccc
Q 046723 323 SILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSV 402 (562)
Q Consensus 323 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 402 (562)
+..+..+++|+.|+++++.... .....+..+++|+.|++.++
T Consensus 211 ----------~~~~~~l~~L~~L~Ls~N~l~~---------------------------~~~~~~~~l~~L~~L~L~~n- 252 (452)
T 3zyi_A 211 ----------MPNLTPLVGLEELEMSGNHFPE---------------------------IRPGSFHGLSSLKKLWVMNS- 252 (452)
T ss_dssp ----------CCCCTTCTTCCEEECTTSCCSE---------------------------ECGGGGTTCTTCCEEECTTS-
T ss_pred ----------cccccccccccEEECcCCcCcc---------------------------cCcccccCccCCCEEEeCCC-
Confidence 1234444455544444333222 22223666777777777776
Q ss_pred ccceeeccchhhhhhhhhccccEEEEecCCCCCCCcc--ccccCCCceEEEecCc
Q 046723 403 ILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLTF--LVFAPNLKSIKVGICH 455 (562)
Q Consensus 403 ~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~ 455 (562)
.+..+...... .+++|+.|+|+++ .++.++. +..+++|+.|+|++++
T Consensus 253 ~l~~~~~~~~~-----~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 253 QVSLIERNAFD-----GLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCCEECTTTTT-----TCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCceECHHHhc-----CCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 55555443322 2677888888877 5666543 5677888888887654
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=182.54 Aligned_cols=238 Identities=23% Similarity=0.270 Sum_probs=162.0
Q ss_pred EEEeeccccccCCCccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCc
Q 046723 166 FFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELT 243 (562)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 243 (562)
.+...+..+..+|.. -..+++.|++++|.+..++ .+..+++|++|++++|.++.+++..|..+++|++|++++|.++
T Consensus 47 ~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 47 KVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp EEECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred EEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence 344445555555542 2357788888888877763 4677888888888888888777777788888888888888887
Q ss_pred ccCc-ccCCcccCcEEeCCCCCccccch-hhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccc
Q 046723 244 KLPV-GISELVSLQHLDLSESDIEELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASE 321 (562)
Q Consensus 244 ~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 321 (562)
.+|. .+..+++|++|++++|.+..+|. .+.++++|++|++++|..+..++...+.++++|++|++.+|.+..
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~------ 199 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE------ 199 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS------
T ss_pred eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc------
Confidence 7765 47778888888888888877665 567788888888887777777777667778888888888776542
Q ss_pred cccccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccc
Q 046723 322 NSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANS 401 (562)
Q Consensus 322 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 401 (562)
+..+..+++| +.|+++++.. .......+..+++|+.|++.++
T Consensus 200 -----------~~~~~~l~~L--------------------------~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 200 -----------IPNLTPLIKL--------------------------DELDLSGNHL-SAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp -----------CCCCTTCSSC--------------------------CEEECTTSCC-CEECTTTTTTCTTCCEEECTTC
T ss_pred -----------ccccCCCccc--------------------------CEEECCCCcc-CccChhhhccCccCCEEECCCC
Confidence 1224444444 4444444422 2222234667778888888776
Q ss_pred cccceeeccchhhhhhhhhccccEEEEecCCCCCCCcc--ccccCCCceEEEecCc
Q 046723 402 VILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLTF--LVFAPNLKSIKVGICH 455 (562)
Q Consensus 402 ~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~ 455 (562)
.+..++..... .+++|+.|+|+++ .++.++. +..+++|+.|+|++++
T Consensus 242 -~l~~~~~~~~~-----~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 242 -QIQVIERNAFD-----NLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -CCCEECTTSST-----TCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred -ceeEEChhhhc-----CCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 56655544332 2678888888888 5666543 5678888888887654
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=1.7e-18 Score=187.19 Aligned_cols=339 Identities=18% Similarity=0.184 Sum_probs=218.7
Q ss_pred ccEEEeeccccccCC--CccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecC
Q 046723 164 ENFFVYAGVGLVRAP--DVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSH 239 (562)
Q Consensus 164 ~~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 239 (562)
-+.+.+..+.+..++ .+.+++++++|++++|.++.++ .|.++++|++|+|++|.++.+++..|..+++|++|++++
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~ 133 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTT
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCC
Confidence 355666666666654 4888999999999999999885 478999999999999999999998899999999999999
Q ss_pred CCCcccCc-ccCCcccCcEEeCCCCCcc--ccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCC----EEEecCCC
Q 046723 240 CELTKLPV-GISELVSLQHLDLSESDIE--ELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQ----VLRMFGAS 312 (562)
Q Consensus 240 ~~~~~lp~-~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~----~L~l~~~~ 312 (562)
|+++.+|. .++++++|++|++++|.++ .+|..++.+++|++|++++| .+..++...+..+.+++ .+++..+.
T Consensus 134 N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 134 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-cccccccccccchhhhhhhhhhhhcccCc
Confidence 99999875 5899999999999999887 45778899999999999987 44444332222211111 11111111
Q ss_pred ccch----------------------------------------------------------------------------
Q 046723 313 HKAI---------------------------------------------------------------------------- 316 (562)
Q Consensus 313 ~~~~---------------------------------------------------------------------------- 316 (562)
...+
T Consensus 213 l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 213 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence 0000
Q ss_pred -----------------------------h-cccccc---c-----cc-----------------CCcccchhhhcCccc
Q 046723 317 -----------------------------K-EASENS---I-----LF-----------------GGGELIVEELLGLKH 341 (562)
Q Consensus 317 -----------------------------~-~~~~~~---~-----~~-----------------~~~~~~~~~l~~l~~ 341 (562)
. ...... . .. ............+++
T Consensus 293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~ 372 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 372 (635)
T ss_dssp SCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTT
T ss_pred ccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccc
Confidence 0 000000 0 00 000000111234666
Q ss_pred cceeeEEEecccc-------------hH----------HHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeee
Q 046723 342 LEVISLTLRNSHG-------------LQ----------SFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQI 398 (562)
Q Consensus 342 L~~L~l~~~~~~~-------------~~----------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 398 (562)
|+.++++.+.... +. ..........+|+.+.+..+......+...+..+++++.+++
T Consensus 373 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l 452 (635)
T 4g8a_A 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452 (635)
T ss_dssp CCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred cccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence 6666554332210 00 000111223478888887776655555455677888888888
Q ss_pred ccccccceeeccchhhhhhhhhccccEEEEecCCCCCCC--ccccccCCCceEEEecCcchhhhhcCCCCCCccccccCC
Q 046723 399 ANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDL--TFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANL 476 (562)
Q Consensus 399 ~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~ 476 (562)
..+ .+......... .+++|+.|+++++.....+ ..+..+++|++|+|++|. ++.++. ..+
T Consensus 453 s~n-~l~~~~~~~~~-----~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~-----------~~f 514 (635)
T 4g8a_A 453 SHT-HTRVAFNGIFN-----GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP-----------TAF 514 (635)
T ss_dssp TTS-CCEECCTTTTT-----TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT-----------TTT
T ss_pred ccc-ccccccccccc-----cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcCh-----------HHH
Confidence 776 44444433332 2778888888887544432 346788888999998874 455432 245
Q ss_pred CCccccceeeccCCcCCcccCcC-CCCCCCcceeeeccCCCCccccCC
Q 046723 477 NPFEKLQNLEVAGARNLKSIYWK-PLPFPHLKAMSFLHCKKLKKLPLD 523 (562)
Q Consensus 477 ~~~~~L~~L~l~~c~~L~~~~~~-~~~~~~L~~L~i~~C~~L~~lp~~ 523 (562)
..+++|+.|+|+++ ++..++.. ...+++|++|+++++ +++.+|..
T Consensus 515 ~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 560 (635)
T 4g8a_A 515 NSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQ 560 (635)
T ss_dssp TTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSS
T ss_pred cCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHH
Confidence 67888888888886 46665432 446788888888886 45555443
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=1.2e-18 Score=185.25 Aligned_cols=257 Identities=19% Similarity=0.168 Sum_probs=206.0
Q ss_pred ccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCC
Q 046723 184 EKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSES 263 (562)
Q Consensus 184 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~ 263 (562)
.+++.|+++++.++.+|.... ++|++|++++|.++.++. .+++|++|++++|+++.+|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 358899999999998876322 899999999999998876 57999999999999999987 6789999999999
Q ss_pred CccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccc
Q 046723 264 DIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLE 343 (562)
Q Consensus 264 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (562)
.++.+|. .+++|+.|++++| .+..+|.. +++|++|++++|.+..+ + ..+.+|+
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~l----------------~---~~~~~L~ 164 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASL----------------P---ALPSELC 164 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCC----------------C---CCCTTCC
T ss_pred cCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCCc----------------C---CccCCCC
Confidence 9999987 6789999999998 67888863 58999999999976531 1 1346788
Q ss_pred eeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccc
Q 046723 344 VISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSL 423 (562)
Q Consensus 344 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L 423 (562)
.|+++.+....++ ..+++|+.|++++|.... .+ ..+++|+.|.+.++ .+..++.. +++|
T Consensus 165 ~L~L~~N~l~~l~------~~~~~L~~L~Ls~N~l~~-l~----~~~~~L~~L~L~~N-~l~~l~~~---------~~~L 223 (622)
T 3g06_A 165 KLWAYNNQLTSLP------MLPSGLQELSVSDNQLAS-LP----TLPSELYKLWAYNN-RLTSLPAL---------PSGL 223 (622)
T ss_dssp EEECCSSCCSCCC------CCCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSS-CCSSCCCC---------CTTC
T ss_pred EEECCCCCCCCCc------ccCCCCcEEECCCCCCCC-CC----CccchhhEEECcCC-cccccCCC---------CCCC
Confidence 8888888877765 223489999999876433 22 13478999999887 66655421 5789
Q ss_pred cEEEEecCCCCCCCccccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCcCCcccCcCCCCC
Q 046723 424 NMVEICNCIKLKDLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKSIYWKPLPF 503 (562)
Q Consensus 424 ~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~ 503 (562)
+.|++++| .++.++ ..+++|++|++++|. ++.++. .+++|+.|++++| .+..++.....+
T Consensus 224 ~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~-L~~lp~---------------~~~~L~~L~Ls~N-~L~~lp~~l~~l 283 (622)
T 3g06_A 224 KELIVSGN-RLTSLP--VLPSELKELMVSGNR-LTSLPM---------------LPSGLLSLSVYRN-QLTRLPESLIHL 283 (622)
T ss_dssp CEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC---------------CCTTCCEEECCSS-CCCSCCGGGGGS
T ss_pred CEEEccCC-ccCcCC--CCCCcCcEEECCCCC-CCcCCc---------------ccccCcEEeCCCC-CCCcCCHHHhhc
Confidence 99999999 778777 668999999999974 555421 5789999999997 677888777789
Q ss_pred CCcceeeeccCCC
Q 046723 504 PHLKAMSFLHCKK 516 (562)
Q Consensus 504 ~~L~~L~i~~C~~ 516 (562)
++|+.|++.+++-
T Consensus 284 ~~L~~L~L~~N~l 296 (622)
T 3g06_A 284 SSETTVNLEGNPL 296 (622)
T ss_dssp CTTCEEECCSCCC
T ss_pred cccCEEEecCCCC
Confidence 9999999999864
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=8.7e-19 Score=181.38 Aligned_cols=242 Identities=18% Similarity=0.233 Sum_probs=182.1
Q ss_pred ceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccC-cccCCcccCcEEeCCCCC
Q 046723 186 ARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP-VGISELVSLQHLDLSESD 264 (562)
Q Consensus 186 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~ 264 (562)
.+.++..+..++.+|.- -.+++++|++++|.++.+++..|..+++|++|++++|.++.++ ..+.++++|++|++++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 45667777777777642 2378999999999999988877999999999999999998774 678899999999999999
Q ss_pred ccccchh-hhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccc
Q 046723 265 IEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLE 343 (562)
Q Consensus 265 l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (562)
++.+|.. +..+++|++|++++| .+..+|...+.++++|++|++.+|.... ......+..+++|+
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~--------------~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLE--------------YISEGAFEGLFNLK 199 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCC--------------EECTTTTTTCTTCC
T ss_pred CCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCcc--------------ccChhhccCCCCCC
Confidence 9988765 788999999999998 6778887768899999999998865432 11122345555555
Q ss_pred eeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccc
Q 046723 344 VISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSL 423 (562)
Q Consensus 344 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L 423 (562)
.|+++ ++..... + .+..+++|+.|+++++ .+..+...... .+++|
T Consensus 200 ~L~L~--------------------------~n~l~~~-~--~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-----~l~~L 244 (452)
T 3zyi_A 200 YLNLG--------------------------MCNIKDM-P--NLTPLVGLEELEMSGN-HFPEIRPGSFH-----GLSSL 244 (452)
T ss_dssp EEECT--------------------------TSCCSSC-C--CCTTCTTCCEEECTTS-CCSEECGGGGT-----TCTTC
T ss_pred EEECC--------------------------CCccccc-c--cccccccccEEECcCC-cCcccCccccc-----CccCC
Confidence 55544 3322221 1 3667889999999988 66666444332 28899
Q ss_pred cEEEEecCCCCCCC--ccccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCc
Q 046723 424 NMVEICNCIKLKDL--TFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGAR 491 (562)
Q Consensus 424 ~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 491 (562)
+.|+++++ .++.+ ..+..+++|++|+|+++. ++.++. .....+++|+.|++++++
T Consensus 245 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-----------~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 245 KKLWVMNS-QVSLIERNAFDGLASLVELNLAHNN-LSSLPH-----------DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSCCCT-----------TSSTTCTTCCEEECCSSC
T ss_pred CEEEeCCC-cCceECHHHhcCCCCCCEEECCCCc-CCccCh-----------HHhccccCCCEEEccCCC
Confidence 99999999 56653 347889999999999974 555543 234568999999999754
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=9.8e-19 Score=180.32 Aligned_cols=173 Identities=25% Similarity=0.349 Sum_probs=143.2
Q ss_pred ccEEEeeccccccC--CCccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecC
Q 046723 164 ENFFVYAGVGLVRA--PDVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSH 239 (562)
Q Consensus 164 ~~~~~~~~~~~~~~--~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 239 (562)
-+.+.+.++.+... ..+..+++++.|++++|.+..++ .+..+++|++|++++|.++.++...|..+++|++|++++
T Consensus 66 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 145 (440)
T 3zyj_A 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145 (440)
T ss_dssp CSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCS
T ss_pred CcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCC
Confidence 35566666665544 45788899999999999998875 578999999999999999999988899999999999999
Q ss_pred CCCcccCc-ccCCcccCcEEeCCCC-Cccccch-hhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccch
Q 046723 240 CELTKLPV-GISELVSLQHLDLSES-DIEELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAI 316 (562)
Q Consensus 240 ~~~~~lp~-~~~~l~~L~~L~l~~~-~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~ 316 (562)
|.++.+|. .+.++++|++|+++++ .+..++. .+..+++|++|++++| .+..+|. +..+++|++|++++|.+..
T Consensus 146 N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls~N~l~~- 221 (440)
T 3zyj_A 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN--LTPLIKLDELDLSGNHLSA- 221 (440)
T ss_dssp CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC--CTTCSSCCEEECTTSCCCE-
T ss_pred CcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc--cCCCcccCEEECCCCccCc-
Confidence 99998865 6889999999999995 6677765 5889999999999998 7888885 7899999999999997653
Q ss_pred hcccccccccCCcccchhhhcCccccceeeEEEecccc
Q 046723 317 KEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHG 354 (562)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 354 (562)
.....+..+++|+.|+++.+....
T Consensus 222 --------------~~~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 222 --------------IRPGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp --------------ECTTTTTTCTTCCEEECTTCCCCE
T ss_pred --------------cChhhhccCccCCEEECCCCceeE
Confidence 234567777788877776655443
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=3.3e-19 Score=174.60 Aligned_cols=128 Identities=29% Similarity=0.343 Sum_probs=59.6
Q ss_pred ccceEEeccccccccCCC--CCCCccccEEEccccCccccc--hhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEe
Q 046723 184 EKARRLSLMQNQIRNLSE--IPTCPHLLTLFLNENNLRKIH--NDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLD 259 (562)
Q Consensus 184 ~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 259 (562)
++++.|++.+|.++.++. +..+++|++|++++|.++... +..+..+++|++|++++|.++.+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 345555555555544432 344555555555555444321 1113344555555555555555544455555555555
Q ss_pred CCCCCccccch--hhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCC
Q 046723 260 LSESDIEELPG--ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGAS 312 (562)
Q Consensus 260 l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~ 312 (562)
+++|.++.++. .+..+++|++|++++| .+...+...+.++++|++|++.+|.
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCE
T ss_pred CCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCc
Confidence 55555444432 3444555555555544 2222222224445555555555443
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=1.4e-18 Score=170.14 Aligned_cols=242 Identities=19% Similarity=0.181 Sum_probs=189.0
Q ss_pred eEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCccc---CcccCCcccCcEEeCCCC
Q 046723 187 RRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKL---PVGISELVSLQHLDLSES 263 (562)
Q Consensus 187 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~l---p~~~~~l~~L~~L~l~~~ 263 (562)
+.++..++.++.+|. .-.++|++|+++++.++.++...+..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 356777777777765 2347999999999999999988889999999999999998855 567778999999999999
Q ss_pred CccccchhhhCCCCCcEEeccCcCCCCccch-hhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCcccc
Q 046723 264 DIEELPGELKALVNLKCLDLEYTGNLITIPR-QLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHL 342 (562)
Q Consensus 264 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 342 (562)
.+..+|..+..+++|++|++++| .+..++. ..+..+++|++|++.+|.... .....+..+++|
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L 152 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRV---------------AFNGIFNGLSSL 152 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEE---------------CSTTTTTTCTTC
T ss_pred ccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCc---------------cchhhcccCcCC
Confidence 99999999999999999999998 5666664 448899999999999997653 234567888999
Q ss_pred ceeeEEEecccc--hHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhh
Q 046723 343 EVISLTLRNSHG--LQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAF 420 (562)
Q Consensus 343 ~~L~l~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 420 (562)
+.|+++.+.... .+... ...++|++|+++++.... .....+..+++|+.|+++++ .+..++..... .+
T Consensus 153 ~~L~l~~n~l~~~~~~~~~---~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-----~l 222 (306)
T 2z66_A 153 EVLKMAGNSFQENFLPDIF---TELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYK-----CL 222 (306)
T ss_dssp CEEECTTCEEGGGEECSCC---TTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTS-CCSBCCSGGGT-----TC
T ss_pred CEEECCCCccccccchhHH---hhCcCCCEEECCCCCcCC-cCHHHhcCCCCCCEEECCCC-ccCccChhhcc-----Cc
Confidence 999998776553 23222 223489999999875433 33345788999999999988 56655443222 37
Q ss_pred ccccEEEEecCCCCCCC--ccccccC-CCceEEEecCcc
Q 046723 421 RSLNMVEICNCIKLKDL--TFLVFAP-NLKSIKVGICHA 456 (562)
Q Consensus 421 ~~L~~L~L~~c~~l~~l--~~l~~l~-~L~~L~L~~c~~ 456 (562)
++|+.|+++++ .+... ..+..+| +|++|++++++.
T Consensus 223 ~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 223 NSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCCCe
Confidence 99999999999 45553 3466774 999999998653
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=1.2e-19 Score=178.11 Aligned_cols=244 Identities=15% Similarity=0.121 Sum_probs=159.8
Q ss_pred cccceEEeccccccccCCC-CCCCccccEEEccccCccc--cchhhhc-------CCCCCcEEEecCCCCc-ccCccc--
Q 046723 183 WEKARRLSLMQNQIRNLSE-IPTCPHLLTLFLNENNLRK--IHNDFFQ-------FMPSLKVLNLSHCELT-KLPVGI-- 249 (562)
Q Consensus 183 ~~~l~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~--~~~~~~~-------~l~~L~~L~l~~~~~~-~lp~~~-- 249 (562)
..+++.+++.+|.+ .+|. +. ..|+.|+++++.+.. ++.. +. .+++|++|++++|.++ .+|..+
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~--~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFT--DIIKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHH--HHHHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc-ccHHHHH--HHHhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 45677788888887 4443 22 238888888888753 3333 32 6899999999999888 678776
Q ss_pred CCcccCcEEeCCCCCccccchhhhCC-----CCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhccccccc
Q 046723 250 SELVSLQHLDLSESDIEELPGELKAL-----VNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSI 324 (562)
Q Consensus 250 ~~l~~L~~L~l~~~~l~~lp~~~~~l-----~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 324 (562)
..+++|++|++++|.++.+|..++.+ ++|++|++++| .+..++...++++++|++|++++|....
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------- 187 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELG--------- 187 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCH---------
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCc---------
Confidence 88999999999999998888877777 89999999998 5677775558899999999999987542
Q ss_pred ccCCcccchhhh--cCccccceeeEEEecccchHHHHhhh-hhhccccceeeccccCCCccchhhhhhhcccCeeeeccc
Q 046723 325 LFGGGELIVEEL--LGLKHLEVISLTLRNSHGLQSFLRSW-KLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANS 401 (562)
Q Consensus 325 ~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 401 (562)
....+..+ ..+++|+.|+++.+....++...... ...++|+.|+++++.-....+...+..+++|+.|+++++
T Consensus 188 ----~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 188 ----ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263 (312)
T ss_dssp ----HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS
T ss_pred ----chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC
Confidence 11123333 67888888888887777554433221 122366666666654433332222344556666666555
Q ss_pred cccceeeccchhhhhhhhhccccEEEEecCCCCCCCccccccCCCceEEEecC
Q 046723 402 VILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLTFLVFAPNLKSIKVGIC 454 (562)
Q Consensus 402 ~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c 454 (562)
.+..++... +++|++|+++++ .++.+|.+..+++|++|+++++
T Consensus 264 -~l~~ip~~~--------~~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 264 -GLKQVPKGL--------PAKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp -CCSSCCSSC--------CSEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTC
T ss_pred -ccChhhhhc--------cCCceEEECCCC-CCCCChhHhhCCCCCEEeccCC
Confidence 444433322 245666666655 4454444555555555555553
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=1.8e-19 Score=177.26 Aligned_cols=241 Identities=14% Similarity=0.123 Sum_probs=189.9
Q ss_pred ccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEe
Q 046723 182 GWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLD 259 (562)
Q Consensus 182 ~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 259 (562)
..++++.|++++|.+..++ .+..+++|++|++++|.++..++ +..+++|++|++++|.++.+|. .++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEE
Confidence 3468999999999998875 47899999999999999987765 8899999999999998887763 48999999
Q ss_pred CCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhh-cC
Q 046723 260 LSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEEL-LG 338 (562)
Q Consensus 260 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ 338 (562)
+++|.+..++.. .+++|++|++++| .+..++...++.+++|++|++++|.+.. ..+..+ ..
T Consensus 106 l~~n~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~~~~~ 167 (317)
T 3o53_A 106 AANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT---------------VNFAELAAS 167 (317)
T ss_dssp CCSSCCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCE---------------EEGGGGGGG
T ss_pred CCCCccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCc---------------ccHHHHhhc
Confidence 999999887644 4789999999998 6677766557889999999999987763 123333 46
Q ss_pred ccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhh
Q 046723 339 LKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQF 418 (562)
Q Consensus 339 l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 418 (562)
+++|+.|+++.+....++... ..++|++|+++++.-....+ .+..+++|+.|+++++ .+..++..+..
T Consensus 168 l~~L~~L~L~~N~l~~~~~~~----~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L~~L~L~~N-~l~~l~~~~~~----- 235 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYDVKGQV----VFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNN-KLVLIEKALRF----- 235 (317)
T ss_dssp TTTCCEEECTTSCCCEEECCC----CCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTS-CCCEECTTCCC-----
T ss_pred cCcCCEEECCCCcCccccccc----ccccCCEEECCCCcCCcchh--hhcccCcccEEECcCC-cccchhhHhhc-----
Confidence 789999999888877664322 24489999999876544333 3788999999999988 77777766544
Q ss_pred hhccccEEEEecCCCCC--C-CccccccCCCceEEEecCcchhhh
Q 046723 419 AFRSLNMVEICNCIKLK--D-LTFLVFAPNLKSIKVGICHAMEEI 460 (562)
Q Consensus 419 ~~~~L~~L~L~~c~~l~--~-l~~l~~l~~L~~L~L~~c~~l~~l 460 (562)
+++|+.|++++++ +. . ..++..+++|+.|++.++..++..
T Consensus 236 -l~~L~~L~l~~N~-~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 236 -SQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp -CTTCCEEECTTCC-CBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred -CCCCCEEEccCCC-ccCcCHHHHHhccccceEEECCCchhccCC
Confidence 7899999999994 44 2 345778899999999877766543
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=2.3e-18 Score=166.80 Aligned_cols=218 Identities=19% Similarity=0.229 Sum_probs=117.6
Q ss_pred eEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCccc-CcccCCcccCcEEeCCCCC-
Q 046723 187 RRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKL-PVGISELVSLQHLDLSESD- 264 (562)
Q Consensus 187 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~- 264 (562)
+.++..++.++.+|. ...++|++|+++++.++.+++..+..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 344555555555542 2235666666666666666655566666666666666666655 5556666666666666664
Q ss_pred cccc-chhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccc
Q 046723 265 IEEL-PGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLE 343 (562)
Q Consensus 265 l~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (562)
+..+ |..+..+++|++|++++| .+..++...+.++++|++|++.+|.+.. .....++.+++|+
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~ 156 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQA---------------LPDDTFRDLGNLT 156 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCC---------------CCTTTTTTCTTCC
T ss_pred ccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccc---------------cCHhHhccCCCcc
Confidence 5555 445666666666666665 3444444445666666666666665432 1112244445555
Q ss_pred eeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccc
Q 046723 344 VISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSL 423 (562)
Q Consensus 344 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L 423 (562)
.|+++++....+ +...+..+++|+.|++.++ .+..+...... .+++|
T Consensus 157 ~L~l~~n~l~~~---------------------------~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-----~l~~L 203 (285)
T 1ozn_A 157 HLFLHGNRISSV---------------------------PERAFRGLHSLDRLLLHQN-RVAHVHPHAFR-----DLGRL 203 (285)
T ss_dssp EEECCSSCCCEE---------------------------CTTTTTTCTTCCEEECCSS-CCCEECTTTTT-----TCTTC
T ss_pred EEECCCCccccc---------------------------CHHHhcCccccCEEECCCC-cccccCHhHcc-----Ccccc
Confidence 444443322221 1112344555666666555 34333222211 15666
Q ss_pred cEEEEecCCCCCCCcc--ccccCCCceEEEecCc
Q 046723 424 NMVEICNCIKLKDLTF--LVFAPNLKSIKVGICH 455 (562)
Q Consensus 424 ~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~ 455 (562)
+.|+++++ .++.++. +..+++|++|++++++
T Consensus 204 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 204 MTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 66666666 4444432 5566666666666544
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=9.7e-19 Score=182.16 Aligned_cols=238 Identities=16% Similarity=0.119 Sum_probs=152.9
Q ss_pred CCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEEe
Q 046723 203 PTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLD 282 (562)
Q Consensus 203 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~ 282 (562)
..+++|++|++++|.++.+++..|..+++|++|++++|.++..++ ++.+++|++|++++|.++.+|.. ++|++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 345678888888888887776667888888888888887776654 77788888888888877776632 7788888
Q ss_pred ccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEecccchHHHHhhh
Q 046723 283 LEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSW 362 (562)
Q Consensus 283 l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~ 362 (562)
+++| .+..++. ..+++|++|++.+|.+.. ..+..++.+++|+.|+++.+...+.... ...
T Consensus 106 L~~N-~l~~~~~---~~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~ 165 (487)
T 3oja_A 106 AANN-NISRVSC---SRGQGKKNIYLANNKITM---------------LRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELA 165 (487)
T ss_dssp CCSS-CCCCEEE---CCCSSCEEEECCSSCCCS---------------GGGBCGGGGSSEEEEECTTSCCCEEEGG-GGG
T ss_pred CcCC-cCCCCCc---cccCCCCEEECCCCCCCC---------------CCchhhcCCCCCCEEECCCCCCCCcChH-HHh
Confidence 8877 5555554 346778888888776653 1233456667777777776665543210 011
Q ss_pred hhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCCc-ccc
Q 046723 363 KLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLT-FLV 441 (562)
Q Consensus 363 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~ 441 (562)
..+++|+.|++++|......+ ...+++|+.|+++++ .+..++..+.. +++|+.|+++++ .+..+| .+.
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~~~~------l~~L~~L~Ls~N-~l~~lp~~l~ 234 (487)
T 3oja_A 166 ASSDTLEHLNLQYNFIYDVKG---QVVFAKLKTLDLSSN-KLAFMGPEFQS------AAGVTWISLRNN-KLVLIEKALR 234 (487)
T ss_dssp GGTTTCCEEECTTSCCCEEEC---CCCCTTCCEEECCSS-CCCEECGGGGG------GTTCSEEECTTS-CCCEECTTCC
T ss_pred hhCCcccEEecCCCccccccc---cccCCCCCEEECCCC-CCCCCCHhHcC------CCCccEEEecCC-cCcccchhhc
Confidence 112367777777665333322 345677778887776 56666555433 677888888777 455543 366
Q ss_pred ccCCCceEEEecCcch-hhhhcCCCCCCccccccCCCCccccceeecc
Q 046723 442 FAPNLKSIKVGICHAM-EEIASEGKFAEVPEVMANLNPFEKLQNLEVA 488 (562)
Q Consensus 442 ~l~~L~~L~L~~c~~l-~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 488 (562)
.+++|+.|++++++.. ..++. ....++.|+.+.+.
T Consensus 235 ~l~~L~~L~l~~N~l~c~~~~~------------~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 235 FSQNLEHFDLRGNGFHCGTLRD------------FFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCTTCCEEECTTCCBCHHHHHH------------HHTTCHHHHHHHHH
T ss_pred cCCCCCEEEcCCCCCcCcchHH------------HHHhCCCCcEEecc
Confidence 7777888887776543 12222 23446666666665
No 65
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=1.9e-17 Score=161.90 Aligned_cols=153 Identities=21% Similarity=0.325 Sum_probs=122.0
Q ss_pred ccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEe
Q 046723 180 VRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLD 259 (562)
Q Consensus 180 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 259 (562)
...+.+++.|++.++.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++|.++.++ .+..+++|++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 44567889999999988888888888999999999998888876 788999999999999888875 688889999999
Q ss_pred CCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCc
Q 046723 260 LSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGL 339 (562)
Q Consensus 260 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 339 (562)
+++|.++.+|. +..+++|++|++++| .+..++. +..+++|++|++.+|.... ...+..+
T Consensus 114 l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~-----------------~~~l~~l 172 (308)
T 1h6u_A 114 LTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSD-----------------LTPLANL 172 (308)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCC-----------------CGGGTTC
T ss_pred CCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCC-----------------ChhhcCC
Confidence 99998888774 888899999999987 5667765 7788899999998886652 2226667
Q ss_pred cccceeeEEEecccchH
Q 046723 340 KHLEVISLTLRNSHGLQ 356 (562)
Q Consensus 340 ~~L~~L~l~~~~~~~~~ 356 (562)
++|+.|+++.+....+.
T Consensus 173 ~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 173 SKLTTLKADDNKISDIS 189 (308)
T ss_dssp TTCCEEECCSSCCCCCG
T ss_pred CCCCEEECCCCccCcCh
Confidence 77777776665554443
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=2e-17 Score=161.76 Aligned_cols=203 Identities=21% Similarity=0.295 Sum_probs=149.1
Q ss_pred ccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCccccch
Q 046723 191 LMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELPG 270 (562)
Q Consensus 191 l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~ 270 (562)
+..+.+........+++|++|+++++.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++
T Consensus 26 l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~- 101 (308)
T 1h6u_A 26 AGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS- 101 (308)
T ss_dssp TTCSSTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-
T ss_pred hCCCCcCceecHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-
Confidence 334444444445567889999999999888763 7889999999999999988877 889999999999999988876
Q ss_pred hhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEe
Q 046723 271 ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLR 350 (562)
Q Consensus 271 ~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 350 (562)
.+..+++|++|++++| .+..++. +..+++|++|++.+|.... ...+..+++|+.|+++.+
T Consensus 102 ~~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~-----------------~~~l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTST-QITDVTP--LAGLSNLQVLYLDLNQITN-----------------ISPLAGLTNLQYLSIGNA 161 (308)
T ss_dssp GGTTCTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECCSSCCCC-----------------CGGGGGCTTCCEEECCSS
T ss_pred hhcCCCCCCEEECCCC-CCCCchh--hcCCCCCCEEECCCCccCc-----------------CccccCCCCccEEEccCC
Confidence 6888999999999988 5677765 7889999999999887653 122555566665555544
Q ss_pred cccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEec
Q 046723 351 NSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICN 430 (562)
Q Consensus 351 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~ 430 (562)
....++ .+..+++|+.|++.++ .+..++. . ..+++|++|++++
T Consensus 162 ~l~~~~-----------------------------~l~~l~~L~~L~l~~n-~l~~~~~-l------~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 162 QVSDLT-----------------------------PLANLSKLTTLKADDN-KISDISP-L------ASLPNLIEVHLKN 204 (308)
T ss_dssp CCCCCG-----------------------------GGTTCTTCCEEECCSS-CCCCCGG-G------GGCTTCCEEECTT
T ss_pred cCCCCh-----------------------------hhcCCCCCCEEECCCC-ccCcChh-h------cCCCCCCEEEccC
Confidence 333221 1456677777777766 4554433 2 2377888888888
Q ss_pred CCCCCCCccccccCCCceEEEecCc
Q 046723 431 CIKLKDLTFLVFAPNLKSIKVGICH 455 (562)
Q Consensus 431 c~~l~~l~~l~~l~~L~~L~L~~c~ 455 (562)
| .+..++.+..+++|++|++++++
T Consensus 205 N-~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 205 N-QISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp S-CCCBCGGGTTCTTCCEEEEEEEE
T ss_pred C-ccCccccccCCCCCCEEEccCCe
Confidence 8 67777677888888888888765
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=1.8e-18 Score=185.60 Aligned_cols=241 Identities=17% Similarity=0.157 Sum_probs=122.0
Q ss_pred cCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCcCCCCc-cchhhhcCCCCCCEEEecCCCccchhcccccccccC
Q 046723 249 ISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLIT-IPRQLISNLSRLQVLRMFGASHKAIKEASENSILFG 327 (562)
Q Consensus 249 ~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~-~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 327 (562)
+..+++|+.|++.++....+|..+..+++|++|++++|. +.. .....+.++++|++|++.++ ..
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~~------------- 330 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV-IG------------- 330 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GH-------------
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc-cC-------------
Confidence 344444444444444334455555555566666666553 221 11122455666666666522 11
Q ss_pred CcccchhhhcCccccceeeEEE----------ecccchHHHHhhhhhhccccceeeccccCCCccchhhhhh-hcccCee
Q 046723 328 GGELIVEELLGLKHLEVISLTL----------RNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAY-LKQLNRL 396 (562)
Q Consensus 328 ~~~~~~~~l~~l~~L~~L~l~~----------~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-l~~L~~L 396 (562)
..........+++|+.|++.. ........+......+++|++|.+ .|..++...+..+.. +++|+.|
T Consensus 331 -~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L 408 (592)
T 3ogk_B 331 -DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDF 408 (592)
T ss_dssp -HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEE
T ss_pred -HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEE
Confidence 111222234556677777663 222222222222233346777777 344444444444443 6677777
Q ss_pred eecc---ccccceeeccchhhhhhhhhccccEEEEecCCC-CCC--Cccc-cccCCCceEEEecCcchhhhhcCCCCCCc
Q 046723 397 QIAN---SVILEELKMDYAEEVQQFAFRSLNMVEICNCIK-LKD--LTFL-VFAPNLKSIKVGICHAMEEIASEGKFAEV 469 (562)
Q Consensus 397 ~l~~---~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~-l~~--l~~l-~~l~~L~~L~L~~c~~l~~l~~~~~~~~~ 469 (562)
++.+ ++.+...+.+..-......+++|++|+++.|.. +.+ +..+ ..+++|++|+|++|. +.+..
T Consensus 409 ~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~-------- 479 (592)
T 3ogk_B 409 RLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEG-------- 479 (592)
T ss_dssp EEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHH--------
T ss_pred EEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHH--------
Confidence 7763 334443322110000112367788888876643 332 2223 247788888887765 22210
Q ss_pred cccccCCCCccccceeeccCCcCCcc--cCcCCCCCCCcceeeeccCCCCcc
Q 046723 470 PEVMANLNPFEKLQNLEVAGARNLKS--IYWKPLPFPHLKAMSFLHCKKLKK 519 (562)
Q Consensus 470 ~~~~~~~~~~~~L~~L~l~~c~~L~~--~~~~~~~~~~L~~L~i~~C~~L~~ 519 (562)
.......+++|+.|+|++|+ +.. ++.....+++|++|++++|. ++.
T Consensus 480 --~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 480 --LMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp --HHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred --HHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 00123467899999999997 443 22222357899999999997 554
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=5.1e-17 Score=157.25 Aligned_cols=217 Identities=24% Similarity=0.327 Sum_probs=161.7
Q ss_pred EEEeeccccccCCCccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCC-C
Q 046723 166 FFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCE-L 242 (562)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~ 242 (562)
.+...+.++...|. ....+++.|++++|.+..++ .+..+++|++|++++|.++.+.+..+..+++|++|++++|. +
T Consensus 15 ~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 15 TTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp EEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred EEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 44455555555553 33578999999999999876 47899999999999999999877779999999999999996 8
Q ss_pred ccc-CcccCCcccCcEEeCCCCCcccc-chhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhccc
Q 046723 243 TKL-PVGISELVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEAS 320 (562)
Q Consensus 243 ~~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 320 (562)
+.+ |..+..+++|++|++++|.+..+ |..+.++++|++|++++| .+..++...++++++|++|++.+|.+..
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~----- 167 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISS----- 167 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCE-----
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccc-----
Confidence 877 77899999999999999999877 556889999999999998 6778887668899999999999997653
Q ss_pred ccccccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeecc
Q 046723 321 ENSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIAN 400 (562)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 400 (562)
.....+..+++|+.|+++.+...... ...+..+++|+.|++.+
T Consensus 168 ----------~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------------~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 168 ----------VPERAFRGLHSLDRLLLHQNRVAHVH---------------------------PHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp ----------ECTTTTTTCTTCCEEECCSSCCCEEC---------------------------TTTTTTCTTCCEEECCS
T ss_pred ----------cCHHHhcCccccCEEECCCCcccccC---------------------------HhHccCcccccEeeCCC
Confidence 12234666777777777665443321 11244555666666666
Q ss_pred ccccceeeccchhhhhhhhhccccEEEEecCC
Q 046723 401 SVILEELKMDYAEEVQQFAFRSLNMVEICNCI 432 (562)
Q Consensus 401 ~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~ 432 (562)
+ .+..++..... .+++|+.|++++++
T Consensus 211 n-~l~~~~~~~~~-----~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 211 N-NLSALPTEALA-----PLRALQYLRLNDNP 236 (285)
T ss_dssp S-CCSCCCHHHHT-----TCTTCCEEECCSSC
T ss_pred C-cCCcCCHHHcc-----cCcccCEEeccCCC
Confidence 5 44444332211 25666666666663
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=7.7e-19 Score=182.42 Aligned_cols=310 Identities=15% Similarity=0.140 Sum_probs=178.0
Q ss_pred ccccceEEeccccccccC--CCC-CCCc----cccEEEccccCcccc----chhhhcCCCCCcEEEecCCCCccc-Cc--
Q 046723 182 GWEKARRLSLMQNQIRNL--SEI-PTCP----HLLTLFLNENNLRKI----HNDFFQFMPSLKVLNLSHCELTKL-PV-- 247 (562)
Q Consensus 182 ~~~~l~~L~l~~~~~~~l--~~~-~~~~----~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~l-p~-- 247 (562)
..++++.|++++|.+... ..+ ..++ +|++|++++|.++.. .+..+..+++|++|++++|.++.. +.
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 133 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLL 133 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHH
Confidence 345666666666665441 111 1122 566777766666532 233456666777777776665421 11
Q ss_pred --c-cCCcccCcEEeCCCCCccc-----cchhhhCCCCCcEEeccCcCCCCccchhhh-----cCCCCCCEEEecCCCcc
Q 046723 248 --G-ISELVSLQHLDLSESDIEE-----LPGELKALVNLKCLDLEYTGNLITIPRQLI-----SNLSRLQVLRMFGASHK 314 (562)
Q Consensus 248 --~-~~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~-----~~l~~L~~L~l~~~~~~ 314 (562)
. .....+|++|++++|.++. ++..+..+++|++|++++|. +.......+ ...++|++|++.+|...
T Consensus 134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 1 1224457777777666552 34455566677777777663 332221111 13456777777766554
Q ss_pred chhcccccccccCCcccchhhhcCccccceeeEEEecccchH--HHHhhh-hhhccccceeeccccCCCccc----hhhh
Q 046723 315 AIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQ--SFLRSW-KLRRCTRALLLQCFNDSTLLE----VSAL 387 (562)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~l~~~~-~~~~~L~~L~l~~~~~~~~~~----~~~l 387 (562)
.. ........+..+++|+.|+++.+...... .+.... ...++|++|++++|. ++... ...+
T Consensus 213 ~~-----------~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l 280 (461)
T 1z7x_W 213 SD-----------NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVL 280 (461)
T ss_dssp TT-----------HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHH
T ss_pred HH-----------HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHH
Confidence 21 01123556777899999999887665432 221111 124589999999874 33322 1235
Q ss_pred hhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCC------ccccccCCCceEEEecCcchhhhh
Q 046723 388 AYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDL------TFLVFAPNLKSIKVGICHAMEEIA 461 (562)
Q Consensus 388 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l------~~l~~l~~L~~L~L~~c~~l~~l~ 461 (562)
..+++|+.|+++++ .+................++|++|++++| .++.. ..+..+++|++|++++|. +.+..
T Consensus 281 ~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~ 357 (461)
T 1z7x_W 281 RAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAG 357 (461)
T ss_dssp HHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHH
T ss_pred hhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCCc-ccccc
Confidence 66889999999887 44432222111111112369999999999 45542 235677999999999984 44431
Q ss_pred cCCCCCCccccccCC-CCccccceeeccCCcCCc-----ccCcCCCCCCCcceeeeccCC
Q 046723 462 SEGKFAEVPEVMANL-NPFEKLQNLEVAGARNLK-----SIYWKPLPFPHLKAMSFLHCK 515 (562)
Q Consensus 462 ~~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~~L~-----~~~~~~~~~~~L~~L~i~~C~ 515 (562)
. ......+ ...++|+.|++++|. +. .++.....+++|++|++++|+
T Consensus 358 ~-------~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 358 V-------RELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp H-------HHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred H-------HHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 1 0000111 136799999999984 44 344333457999999999984
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=3e-18 Score=178.45 Aligned_cols=235 Identities=15% Similarity=0.137 Sum_probs=184.6
Q ss_pred ccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEe
Q 046723 182 GWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLD 259 (562)
Q Consensus 182 ~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 259 (562)
.+++++.|++++|.+..++ .+..+++|++|++++|.++..++ +..+++|++|++++|.++.+|.. ++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 4458999999999998875 57899999999999999987766 88999999999999998877643 8999999
Q ss_pred CCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhc-C
Q 046723 260 LSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELL-G 338 (562)
Q Consensus 260 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 338 (562)
+++|.+..++.. .+++|+.|++++| .+..+++..++++++|++|++++|.+.. ..+..+. .
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~l~~~ 167 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT---------------VNFAELAAS 167 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCE---------------EEGGGGGGG
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCC---------------cChHHHhhh
Confidence 999999987753 5789999999998 5666655447889999999999997763 2344454 6
Q ss_pred ccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhh
Q 046723 339 LKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQF 418 (562)
Q Consensus 339 l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 418 (562)
+++|+.|+++++...+++... .+++|+.|+++++.-....+ .+..+++|+.|+++++ .+..++..+..
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~----~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N-~l~~lp~~l~~----- 235 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDVKGQV----VFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNN-KLVLIEKALRF----- 235 (487)
T ss_dssp TTTCCEEECTTSCCCEEECCC----CCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTS-CCCEECTTCCC-----
T ss_pred CCcccEEecCCCccccccccc----cCCCCCEEECCCCCCCCCCH--hHcCCCCccEEEecCC-cCcccchhhcc-----
Confidence 889999999988877764322 24589999999976544333 3788999999999987 77777766544
Q ss_pred hhccccEEEEecCCCC-CCC-ccccccCCCceEEEec
Q 046723 419 AFRSLNMVEICNCIKL-KDL-TFLVFAPNLKSIKVGI 453 (562)
Q Consensus 419 ~~~~L~~L~L~~c~~l-~~l-~~l~~l~~L~~L~L~~ 453 (562)
+++|+.|++++++.. ..+ .++..+++|+.|.+..
T Consensus 236 -l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 236 -SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp -CTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccc
Confidence 789999999999533 123 3466777777776653
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=2.2e-16 Score=152.00 Aligned_cols=199 Identities=23% Similarity=0.239 Sum_probs=105.7
Q ss_pred ccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCc-ccCCcccCcEEeCCCCCccccc-hhhhCCCCCcEEec
Q 046723 206 PHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPV-GISELVSLQHLDLSESDIEELP-GELKALVNLKCLDL 283 (562)
Q Consensus 206 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l 283 (562)
++|++|++++|.++.+++..+..+++|++|++++|.++.++. .+.++++|++|++++|.++.++ ..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 356666666666665555445666666666666666655533 4556666666666666665444 34556666666666
Q ss_pred cCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEecccchHHHHhhhh
Q 046723 284 EYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWK 363 (562)
Q Consensus 284 ~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~ 363 (562)
++| .+..++...++++++|++|++.+|.... ...+..+..+++|+.|+++++....+.
T Consensus 108 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~l~~~~~~l~~L~~L~Ls~N~l~~~~------- 165 (276)
T 2z62_A 108 VET-NLASLENFPIGHLKTLKELNVAHNLIQS--------------FKLPEYFSNLTNLEHLDLSSNKIQSIY------- 165 (276)
T ss_dssp TTS-CCCCSTTCCCTTCTTCCEEECCSSCCCC--------------CCCCGGGGGCTTCCEEECCSSCCCEEC-------
T ss_pred CCC-CccccCchhcccCCCCCEEECcCCccce--------------ecCchhhccCCCCCEEECCCCCCCcCC-------
Confidence 665 3444444335566666666666655431 112334444555555544443322211
Q ss_pred hhccccceeeccccCCCccchhhhhhhcccC----eeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCCcc
Q 046723 364 LRRCTRALLLQCFNDSTLLEVSALAYLKQLN----RLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLTF 439 (562)
Q Consensus 364 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~ 439 (562)
...+..+++|+ .|+++++ .+..++..... ..+|+.|+++++ .++.++.
T Consensus 166 --------------------~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~------~~~L~~L~L~~n-~l~~~~~ 217 (276)
T 2z62_A 166 --------------------CTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFK------EIRLKELALDTN-QLKSVPD 217 (276)
T ss_dssp --------------------GGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSC------SCCEEEEECCSS-CCSCCCT
T ss_pred --------------------HHHhhhhhhccccceeeecCCC-cccccCccccC------CCcccEEECCCC-ceeecCH
Confidence 01122233333 5556554 44544443332 346777777777 4555443
Q ss_pred --ccccCCCceEEEecC
Q 046723 440 --LVFAPNLKSIKVGIC 454 (562)
Q Consensus 440 --l~~l~~L~~L~L~~c 454 (562)
+..+++|++|+++++
T Consensus 218 ~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 218 GIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp TTTTTCCSCCEEECCSS
T ss_pred hHhcccccccEEEccCC
Confidence 456777777777753
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=4.2e-17 Score=153.43 Aligned_cols=83 Identities=22% Similarity=0.352 Sum_probs=42.9
Q ss_pred CCcEEEecCCCCcccCc-ccCCcccCcEEeCCCCC-ccccch-hhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEE
Q 046723 231 SLKVLNLSHCELTKLPV-GISELVSLQHLDLSESD-IEELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLR 307 (562)
Q Consensus 231 ~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~-l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~ 307 (562)
+|++|++++|+++.+|. .+.++++|++|++++|. ++.+|. .+..+++|++|++++|..+..+|...+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555555443 34555555555555553 554443 3455555555555552244555544345555555555
Q ss_pred ecCCCc
Q 046723 308 MFGASH 313 (562)
Q Consensus 308 l~~~~~ 313 (562)
+.+|..
T Consensus 112 l~~n~l 117 (239)
T 2xwt_C 112 IFNTGL 117 (239)
T ss_dssp EEEECC
T ss_pred CCCCCC
Confidence 555543
No 73
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=3.8e-17 Score=162.14 Aligned_cols=100 Identities=26% Similarity=0.205 Sum_probs=62.6
Q ss_pred ccEEEccccCccccchhhhcCC--CCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCccc--cchhhhCCCCCcEEec
Q 046723 208 LLTLFLNENNLRKIHNDFFQFM--PSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEE--LPGELKALVNLKCLDL 283 (562)
Q Consensus 208 L~~L~l~~~~l~~~~~~~~~~l--~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l 283 (562)
++.++++++.+. +..+..+ +++++|+++++.+...+..+..+++|++|++++|.+.. +|..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 344455544443 2234444 67777777777666665556667777777777776652 6666777777777777
Q ss_pred cCcCCCCccchhhhcCCCCCCEEEecCC
Q 046723 284 EYTGNLITIPRQLISNLSRLQVLRMFGA 311 (562)
Q Consensus 284 ~~~~~l~~~p~~~~~~l~~L~~L~l~~~ 311 (562)
++|......+.. ++++++|++|++.+|
T Consensus 126 ~~~~l~~~~~~~-l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 126 EGLRLSDPIVNT-LAKNSNLVRLNLSGC 152 (336)
T ss_dssp TTCBCCHHHHHH-HTTCTTCSEEECTTC
T ss_pred cCcccCHHHHHH-HhcCCCCCEEECCCC
Confidence 777422233433 666777777777776
No 74
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=3.4e-17 Score=175.66 Aligned_cols=300 Identities=12% Similarity=0.053 Sum_probs=186.5
Q ss_pred ccccceEEeccccccccCC------CCCCCccccEEEccccCccccc----hhhhcCCCCCcEEEecCCCCcccCcccCC
Q 046723 182 GWEKARRLSLMQNQIRNLS------EIPTCPHLLTLFLNENNLRKIH----NDFFQFMPSLKVLNLSHCELTKLPVGISE 251 (562)
Q Consensus 182 ~~~~l~~L~l~~~~~~~l~------~~~~~~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~~lp~~~~~ 251 (562)
.+++++.|++.+|.+.+.. ....+++|++|+++++.++.+. ...+..+++|++|++++|.+..+|..+.+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 4456777777766654321 1234566777777766665222 22345667777777777766666666666
Q ss_pred cccCcEEeCCCCCc----cccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccC
Q 046723 252 LVSLQHLDLSESDI----EELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFG 327 (562)
Q Consensus 252 l~~L~~L~l~~~~l----~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 327 (562)
+++|++|+++.... ...+..+..+++|+.+++.++ ....+|.. +..+++|++|++++|....
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~-~~~~~~L~~L~Ls~~~l~~------------ 307 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPIL-FPFAAQIRKLDLLYALLET------------ 307 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGG-GGGGGGCCEEEETTCCCCH------------
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHH-HhhcCCCcEEecCCCcCCH------------
Confidence 77777777764311 133345566677777777664 34445543 6778889999998887432
Q ss_pred CcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeecc----------ccCCCccchhh-hhhhcccCee
Q 046723 328 GGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQC----------FNDSTLLEVSA-LAYLKQLNRL 396 (562)
Q Consensus 328 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~----------~~~~~~~~~~~-l~~l~~L~~L 396 (562)
......+..+++|+.|++. +.. ....+......+++|++|++++ |...+...+.. ...+++|+.|
T Consensus 308 --~~~~~~~~~~~~L~~L~L~-~~~-~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L 383 (592)
T 3ogk_B 308 --EDHCTLIQKCPNLEVLETR-NVI-GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383 (592)
T ss_dssp --HHHHHHHTTCTTCCEEEEE-GGG-HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred --HHHHHHHHhCcCCCEEecc-Ccc-CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence 2233446788999999998 222 2222223333445899999995 77666655433 3568999999
Q ss_pred eeccccccceeeccchhhhhhhhhccccEEEEec---CCCCCCCc-------cccccCCCceEEEecCcc-hhhhhcCCC
Q 046723 397 QIANSVILEELKMDYAEEVQQFAFRSLNMVEICN---CIKLKDLT-------FLVFAPNLKSIKVGICHA-MEEIASEGK 465 (562)
Q Consensus 397 ~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~---c~~l~~l~-------~l~~l~~L~~L~L~~c~~-l~~l~~~~~ 465 (562)
.+ .|..+......... ..+++|+.|++.+ |..+++.| .+..+++|++|++++|.. +.+...
T Consensus 384 ~l-~~~~l~~~~~~~l~----~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~--- 455 (592)
T 3ogk_B 384 AV-YVSDITNESLESIG----TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL--- 455 (592)
T ss_dssp EE-EESCCCHHHHHHHH----HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH---
T ss_pred Ee-ecCCccHHHHHHHH----hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH---
Confidence 99 44455432221111 2378999999985 44666532 145799999999988764 222110
Q ss_pred CCCccccccCCCCccccceeeccCCcCCcc--cCcCCCCCCCcceeeeccCC
Q 046723 466 FAEVPEVMANLNPFEKLQNLEVAGARNLKS--IYWKPLPFPHLKAMSFLHCK 515 (562)
Q Consensus 466 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~--~~~~~~~~~~L~~L~i~~C~ 515 (562)
......+++|+.|++++|. +.. ++.....+++|++|++++|+
T Consensus 456 -------~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 456 -------SYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp -------HHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred -------HHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 0011347899999999885 433 22223457999999999998
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=1.3e-16 Score=154.41 Aligned_cols=200 Identities=25% Similarity=0.247 Sum_probs=144.6
Q ss_pred ccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEe
Q 046723 180 VRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLD 259 (562)
Q Consensus 180 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 259 (562)
+..+.+++.+++.++.++.+|.. -.+++++|++++|.++.+++..+..+++|++|++++|.++.++.. +.+++|++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD-LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC-CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred ccccCCccEEECCCCCCCcCCCC-CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 34556788999999888887642 237899999999999988877789999999999999999888664 7889999999
Q ss_pred CCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCc
Q 046723 260 LSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGL 339 (562)
Q Consensus 260 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 339 (562)
+++|.++.+|..+..+++|++|++++| .+..+|...+.++++|++|++.+|.+... ....+..+
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l 147 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTL---------------PPGLLTPT 147 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCC---------------CTTTTTTC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCcc---------------Chhhcccc
Confidence 999999999988889999999999988 67778766688899999999998876531 12223444
Q ss_pred cccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhh
Q 046723 340 KHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFA 419 (562)
Q Consensus 340 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 419 (562)
++|+.|+++.+... ..+...+..+++|+.|++.++ .+..++.....
T Consensus 148 ~~L~~L~L~~N~l~---------------------------~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~------ 193 (290)
T 1p9a_G 148 PKLEKLSLANNNLT---------------------------ELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFG------ 193 (290)
T ss_dssp TTCCEEECTTSCCS---------------------------CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT------
T ss_pred cCCCEEECCCCcCC---------------------------ccCHHHhcCcCCCCEEECCCC-cCCccChhhcc------
Confidence 55554444333222 222222455666777777665 55555554433
Q ss_pred hccccEEEEecC
Q 046723 420 FRSLNMVEICNC 431 (562)
Q Consensus 420 ~~~L~~L~L~~c 431 (562)
.++|+.|.+.++
T Consensus 194 ~~~L~~l~L~~N 205 (290)
T 1p9a_G 194 SHLLPFAFLHGN 205 (290)
T ss_dssp TCCCSEEECCSC
T ss_pred cccCCeEEeCCC
Confidence 456666666665
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=2.5e-16 Score=151.56 Aligned_cols=145 Identities=24% Similarity=0.312 Sum_probs=121.6
Q ss_pred EeeccccccCCCccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCccc
Q 046723 168 VYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKL 245 (562)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~l 245 (562)
...+......|.. -..+++.|++++|.+..++ .+..+++|++|++++|.++.+++..+..+++|++|++++|.++.+
T Consensus 13 ~c~~~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 13 QCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp ECTTSCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred EecCCCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 3344444445442 1257999999999998875 578899999999999999999887799999999999999999877
Q ss_pred C-cccCCcccCcEEeCCCCCccccch-hhhCCCCCcEEeccCcCCCCc--cchhhhcCCCCCCEEEecCCCccc
Q 046723 246 P-VGISELVSLQHLDLSESDIEELPG-ELKALVNLKCLDLEYTGNLIT--IPRQLISNLSRLQVLRMFGASHKA 315 (562)
Q Consensus 246 p-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~--~p~~~~~~l~~L~~L~l~~~~~~~ 315 (562)
+ ..+.++++|++|++++|.+..++. .++.+++|++|++++| .+.. +|.. ++++++|++|++++|.+..
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCCc
Confidence 5 678999999999999999998766 6889999999999998 4555 5655 8899999999999998764
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=6.6e-17 Score=152.12 Aligned_cols=103 Identities=24% Similarity=0.354 Sum_probs=64.4
Q ss_pred ccccEEEccccCccccchhhhcCCCCCcEEEecCCC-CcccCc-ccCCcccCcEEeCCC-CCccccch-hhhCCCCCcEE
Q 046723 206 PHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCE-LTKLPV-GISELVSLQHLDLSE-SDIEELPG-ELKALVNLKCL 281 (562)
Q Consensus 206 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~-~~~~l~~L~~L~l~~-~~l~~lp~-~~~~l~~L~~L 281 (562)
.+|++|+++++.++.+++..+..+++|++|++++|. ++.++. .+.++++|++|++++ +.++.+|. .+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 366666666666666666556666666666666664 665543 456666666666666 56665553 35566666666
Q ss_pred eccCcCCCCccchhhhcCCCCCC---EEEecCC
Q 046723 282 DLEYTGNLITIPRQLISNLSRLQ---VLRMFGA 311 (562)
Q Consensus 282 ~l~~~~~l~~~p~~~~~~l~~L~---~L~l~~~ 311 (562)
++++| .+..+|. +..+++|+ +|++.+|
T Consensus 111 ~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 111 GIFNT-GLKMFPD--LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EEEEE-CCCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred eCCCC-CCccccc--cccccccccccEEECCCC
Confidence 66665 4555554 55566665 6666666
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=1e-16 Score=153.93 Aligned_cols=157 Identities=23% Similarity=0.333 Sum_probs=109.4
Q ss_pred ccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcc-cCCcccCcEE
Q 046723 180 VRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVG-ISELVSLQHL 258 (562)
Q Consensus 180 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L 258 (562)
...+.+++.|.+.++.+..++.+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+|.. +.++++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 3445677778888877777777777788888888877777664 267778888888888877766544 5777888888
Q ss_pred eCCCCCccccchh-hhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhc
Q 046723 259 DLSESDIEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELL 337 (562)
Q Consensus 259 ~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (562)
++++|.++.+|.. ++.+++|++|++++| .+..+|...++++++|++|++.+|.+.. .....++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~ 178 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQS---------------LPEGVFD 178 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC---------------CCTTTTT
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCc---------------cCHHHhc
Confidence 8888877766654 577788888888877 5666666656777888888887776542 1222345
Q ss_pred CccccceeeEEEecccc
Q 046723 338 GLKHLEVISLTLRNSHG 354 (562)
Q Consensus 338 ~l~~L~~L~l~~~~~~~ 354 (562)
.+++|+.|+++.+...+
T Consensus 179 ~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp TCTTCCEEECCSSCCSC
T ss_pred CCccCCEEECCCCcCCc
Confidence 56666666666554443
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=6.6e-18 Score=175.39 Aligned_cols=312 Identities=18% Similarity=0.174 Sum_probs=146.8
Q ss_pred cccccceEEeccccccccC------CCCCCCccccEEEccccCccccch-hhhcCCC----CCcEEEecCCCCc-----c
Q 046723 181 RGWEKARRLSLMQNQIRNL------SEIPTCPHLLTLFLNENNLRKIHN-DFFQFMP----SLKVLNLSHCELT-----K 244 (562)
Q Consensus 181 ~~~~~l~~L~l~~~~~~~l------~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~l~----~L~~L~l~~~~~~-----~ 244 (562)
..+++++.|++.+|.+... ..+..+++|++|++++|.+.+... .+...++ +|++|++++|.++ .
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 3445566666666655421 123445666666666665554222 2223344 4666666666555 2
Q ss_pred cCcccCCcccCcEEeCCCCCcccc-chhh-----hCCCCCcEEeccCcCCCCccc----hhhhcCCCCCCEEEecCCCcc
Q 046723 245 LPVGISELVSLQHLDLSESDIEEL-PGEL-----KALVNLKCLDLEYTGNLITIP----RQLISNLSRLQVLRMFGASHK 314 (562)
Q Consensus 245 lp~~~~~l~~L~~L~l~~~~l~~l-p~~~-----~~l~~L~~L~l~~~~~l~~~p----~~~~~~l~~L~~L~l~~~~~~ 314 (562)
+|..+..+++|++|++++|.+... +..+ ...++|++|++++| .+.... ...+..+++|++|++++|...
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 355556666666666666655421 1111 12345666666665 233211 112445566666666665543
Q ss_pred chhcccccccccCCcccchhhhc-CccccceeeEEEecccchH--HHHhhhhhhccccceeeccccCCCccchhhh----
Q 046723 315 AIKEASENSILFGGGELIVEELL-GLKHLEVISLTLRNSHGLQ--SFLRSWKLRRCTRALLLQCFNDSTLLEVSAL---- 387 (562)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l---- 387 (562)
.... ......+. ..++|+.|+++.+...... .+.......++|++|+++++. +.......+
T Consensus 184 ~~~~-----------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~ 251 (461)
T 1z7x_W 184 EAGV-----------RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGL 251 (461)
T ss_dssp HHHH-----------HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHH
T ss_pred hHHH-----------HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHH
Confidence 2100 00111111 2346666666655544321 122222233366666666653 222211111
Q ss_pred -hhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCC--cccc-----ccCCCceEEEecCcchhh
Q 046723 388 -AYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDL--TFLV-----FAPNLKSIKVGICHAMEE 459 (562)
Q Consensus 388 -~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l--~~l~-----~l~~L~~L~L~~c~~l~~ 459 (562)
..+++|+.|++++| .+.......... ....+++|++|+++++ .+.+. ..+. ..++|++|++++|.. ..
T Consensus 252 ~~~~~~L~~L~L~~n-~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l-~~ 327 (461)
T 1z7x_W 252 LHPSSRLRTLWIWEC-GITAKGCGDLCR-VLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCSF-TA 327 (461)
T ss_dssp TSTTCCCCEEECTTS-CCCHHHHHHHHH-HHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-BG
T ss_pred hcCCCCceEEECcCC-CCCHHHHHHHHH-HHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCCC-ch
Confidence 13556666666665 333311100000 0012566777777666 34331 1111 225677777776652 21
Q ss_pred hhcCCCCCCccccccCCCCccccceeeccCCcCCcccCcC------CCCCCCcceeeeccCCCCc
Q 046723 460 IASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKSIYWK------PLPFPHLKAMSFLHCKKLK 518 (562)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~------~~~~~~L~~L~i~~C~~L~ 518 (562)
... ......+..+++|+.|+++++ .+.+.... ....++|++|++++| ++.
T Consensus 328 ~~~-------~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~ 383 (461)
T 1z7x_W 328 ACC-------SHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVS 383 (461)
T ss_dssp GGH-------HHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCC
T ss_pred HHH-------HHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCC
Confidence 100 001112344688888888887 34432211 112578999999998 455
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=2.5e-17 Score=163.51 Aligned_cols=199 Identities=13% Similarity=0.053 Sum_probs=117.7
Q ss_pred ceEEeccccccccCCCCCCC--ccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcc--cCcccCCcccCcEEeCC
Q 046723 186 ARRLSLMQNQIRNLSEIPTC--PHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTK--LPVGISELVSLQHLDLS 261 (562)
Q Consensus 186 l~~L~l~~~~~~~l~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~ 261 (562)
.+.+++.++.+.. ..+..+ ++++.|+++++.+...++. +..+++|++|++++|.++. +|..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCCH-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 4556666655442 122333 6778888888877766655 4567888888888887663 67777788888888888
Q ss_pred CCCcc-ccchhhhCCCCCcEEeccCcCCCCc--cchhhhcCCCCCCEEEecCC-CccchhcccccccccCCcccchhhhc
Q 046723 262 ESDIE-ELPGELKALVNLKCLDLEYTGNLIT--IPRQLISNLSRLQVLRMFGA-SHKAIKEASENSILFGGGELIVEELL 337 (562)
Q Consensus 262 ~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~--~p~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (562)
+|.+. ..|..++.+++|++|++++|..+.. ++.. +.++++|++|++.+| .... ......+.
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~--------------~~~~~~~~ 191 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE--------------KHVQVAVA 191 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH--------------HHHHHHHH
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh--------------HHHHHHHH
Confidence 88776 5666777888888888888755553 4433 667888888888877 4431 12344455
Q ss_pred Ccc-ccceeeEEEecc-cchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccc
Q 046723 338 GLK-HLEVISLTLRNS-HGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANS 401 (562)
Q Consensus 338 ~l~-~L~~L~l~~~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 401 (562)
.++ +|+.|+++++.. .....+......+++|++|++++|...+......+..+++|+.|++.+|
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 666 677666665531 1111111111122245555555544333222223444444444444444
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=3e-16 Score=150.66 Aligned_cols=173 Identities=25% Similarity=0.390 Sum_probs=148.6
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcc
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTK 244 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 244 (562)
+.+...+..+...+.+..+++++.|++.+|.+..++.+..+++|++|++++|.++.+++..+..+++|++|++++|.++.
T Consensus 44 ~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 123 (272)
T 3rfs_A 44 DQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123 (272)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred eeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCc
Confidence 45566666677777888899999999999999999989999999999999999999998888999999999999999998
Q ss_pred cCcc-cCCcccCcEEeCCCCCccccchh-hhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhccccc
Q 046723 245 LPVG-ISELVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASEN 322 (562)
Q Consensus 245 lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 322 (562)
+|.. ++.+++|++|++++|.++.+|.. ++.+++|++|++++| .+..++...++++++|++|++.+|.+..
T Consensus 124 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~------- 195 (272)
T 3rfs_A 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKS------- 195 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC-------
T ss_pred cCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCc-------
Confidence 8655 78999999999999999988765 589999999999998 6778887767899999999999997763
Q ss_pred ccccCCcccchhhhcCccccceeeEEEeccc
Q 046723 323 SILFGGGELIVEELLGLKHLEVISLTLRNSH 353 (562)
Q Consensus 323 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 353 (562)
.....+..+++|+.|+++++...
T Consensus 196 --------~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 196 --------VPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp --------CCTTTTTTCTTCCEEECCSSCBC
T ss_pred --------cCHHHHhCCcCCCEEEccCCCcc
Confidence 22344677888888888776543
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=6.7e-16 Score=148.01 Aligned_cols=198 Identities=21% Similarity=0.310 Sum_probs=124.3
Q ss_pred cceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCccc-CCcccCcEEeCCCC
Q 046723 185 KARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGI-SELVSLQHLDLSES 263 (562)
Q Consensus 185 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~~l~~L~~L~l~~~ 263 (562)
..+.++++++.++.+|.. -.++++.|+++++.++.+++..|..+++|++|++++|.++.+|..+ .++++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 345677777777766542 1256777788777777777666777778888888777777776543 66777888888877
Q ss_pred Cccccchh-hhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCcccc
Q 046723 264 DIEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHL 342 (562)
Q Consensus 264 ~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 342 (562)
.++.+|.. +..+++|++|++++| .+..++...+..+++|++|++++|.+... ....+..+++|
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------------~~~~~~~l~~L 159 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSL---------------PKGVFDKLTSL 159 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------CTTTTTTCTTC
T ss_pred cCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCcc---------------CHhHccCCccc
Confidence 77766653 467777888888776 56666665567777788888777765421 12224555555
Q ss_pred ceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhcc
Q 046723 343 EVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRS 422 (562)
Q Consensus 343 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 422 (562)
+.|+++.+....+ +...+..+++|+.|++.++ .+..++..... .+++
T Consensus 160 ~~L~L~~n~l~~~---------------------------~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-----~l~~ 206 (270)
T 2o6q_A 160 KELRLYNNQLKRV---------------------------PEGAFDKLTELKTLKLDNN-QLKRVPEGAFD-----SLEK 206 (270)
T ss_dssp CEEECCSSCCSCC---------------------------CTTTTTTCTTCCEEECCSS-CCSCCCTTTTT-----TCTT
T ss_pred ceeEecCCcCcEe---------------------------ChhHhccCCCcCEEECCCC-cCCcCCHHHhc-----cccC
Confidence 5555544332222 1112445566666666665 45554443222 1566
Q ss_pred ccEEEEecCC
Q 046723 423 LNMVEICNCI 432 (562)
Q Consensus 423 L~~L~L~~c~ 432 (562)
|+.|++.+++
T Consensus 207 L~~L~l~~N~ 216 (270)
T 2o6q_A 207 LKMLQLQENP 216 (270)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEecCCC
Confidence 7777776663
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=3e-16 Score=156.46 Aligned_cols=237 Identities=14% Similarity=0.090 Sum_probs=141.2
Q ss_pred EeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCc-ccCc-ccCCcccCcE-EeCCCCCc
Q 046723 189 LSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELT-KLPV-GISELVSLQH-LDLSESDI 265 (562)
Q Consensus 189 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~-~~~~l~~L~~-L~l~~~~l 265 (562)
++-+++.++.+|.- -.++++.|++++|.++.+++..|..+++|++|++++|++. .+|. .|.++++++. +.+.++++
T Consensus 14 v~C~~~~Lt~iP~~-l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 14 FLCQESKVTEIPSD-LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EEEESTTCCSCCTT-CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred EEecCCCCCccCcC-cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 33344444444421 1245666666666666666555666666666666666543 3432 3455555544 33344555
Q ss_pred cccch-hhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCc-cccc
Q 046723 266 EELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGL-KHLE 343 (562)
Q Consensus 266 ~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~ 343 (562)
+.+|+ .+..+++|++|++++| .+..+|...+....++..+++.++.... ......+..+ ..++
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~--------------~l~~~~f~~~~~~l~ 157 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIH--------------TIERNSFVGLSFESV 157 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCC--------------EECTTSSTTSBSSCE
T ss_pred cccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccc--------------cccccchhhcchhhh
Confidence 55533 3455666666666665 4444544323344445555554432110 0011112222 2355
Q ss_pred eeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccc
Q 046723 344 VISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSL 423 (562)
Q Consensus 344 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L 423 (562)
.|+++.+....++...... .+|+++.+.+++.++..+...+..+++|+.|+++++ .++.++... +.+|
T Consensus 158 ~L~L~~N~i~~i~~~~f~~---~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~--------~~~L 225 (350)
T 4ay9_X 158 ILWLNKNGIQEIHNSAFNG---TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYG--------LENL 225 (350)
T ss_dssp EEECCSSCCCEECTTSSTT---EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSS--------CTTC
T ss_pred hhccccccccCCChhhccc---cchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhh--------hccc
Confidence 5555555555443322111 267888888877777777666889999999999987 788776543 7889
Q ss_pred cEEEEecCCCCCCCccccccCCCceEEEec
Q 046723 424 NMVEICNCIKLKDLTFLVFAPNLKSIKVGI 453 (562)
Q Consensus 424 ~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~ 453 (562)
++|.+.++.+++.+|.+..+++|+.+++.+
T Consensus 226 ~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 226 KKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred hHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 999999999999999999999999999975
No 84
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=5.7e-17 Score=173.97 Aligned_cols=303 Identities=15% Similarity=0.159 Sum_probs=154.2
Q ss_pred ccccceEEecccccccc-----CCCC-CCCccccEEEccccCccccc----hhhhcCCCCCcEEEecCC-CCcccCcccC
Q 046723 182 GWEKARRLSLMQNQIRN-----LSEI-PTCPHLLTLFLNENNLRKIH----NDFFQFMPSLKVLNLSHC-ELTKLPVGIS 250 (562)
Q Consensus 182 ~~~~l~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~-~~~~lp~~~~ 250 (562)
.+++++.|++.+|.+.. ++.+ ..+++|++|+++++. ..+. ...+..+++|++|++++| .+..+|..+.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~ 232 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence 45677888888776544 2222 366788888887665 2222 222345678888888877 5555666666
Q ss_pred CcccCcEEeCCCCC-------------------------------ccccchhhhCCCCCcEEeccCcCCCCc-cchhhhc
Q 046723 251 ELVSLQHLDLSESD-------------------------------IEELPGELKALVNLKCLDLEYTGNLIT-IPRQLIS 298 (562)
Q Consensus 251 ~l~~L~~L~l~~~~-------------------------------l~~lp~~~~~l~~L~~L~l~~~~~l~~-~p~~~~~ 298 (562)
.+++|++|++..+. ...+|..+..+++|++|++++|. +.. ....++.
T Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~ 311 (594)
T 2p1m_B 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLC 311 (594)
T ss_dssp HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHT
T ss_pred cCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHh
Confidence 66677777654431 11233333345666666666654 221 1122244
Q ss_pred CCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEe--------cccchHHHHhhhhhhccccc
Q 046723 299 NLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLR--------NSHGLQSFLRSWKLRRCTRA 370 (562)
Q Consensus 299 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~--------~~~~~~~l~~~~~~~~~L~~ 370 (562)
++++|++|++.+| ... .....-...+++|+.|++... .......+......+++|++
T Consensus 312 ~~~~L~~L~l~~~-~~~--------------~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~ 376 (594)
T 2p1m_B 312 QCPKLQRLWVLDY-IED--------------AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376 (594)
T ss_dssp TCTTCCEEEEEGG-GHH--------------HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCE
T ss_pred cCCCcCEEeCcCc-cCH--------------HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHH
Confidence 5666666666655 110 011111223556666666321 11111111111222336666
Q ss_pred eeeccccCCCccchhhhh-hhcccCeeeec-----cccccceeeccchhhhhhhhhccccEEEEecCCCCCC--Cccccc
Q 046723 371 LLLQCFNDSTLLEVSALA-YLKQLNRLQIA-----NSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKD--LTFLVF 442 (562)
Q Consensus 371 L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~-----~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~ 442 (562)
|.+ +|...+...+..+. .+++|+.|++. +|..+...+.+..-......+++|+.|++.+ .+++ +..+..
T Consensus 377 L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~ 453 (594)
T 2p1m_B 377 VLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGT 453 (594)
T ss_dssp EEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHH
T ss_pred HHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHH
Confidence 633 33444443333332 46677777776 3444443322110000012356777777754 3333 223333
Q ss_pred -cCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCcCCcccCc--CCCCCCCcceeeeccCCC
Q 046723 443 -APNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKSIYW--KPLPFPHLKAMSFLHCKK 516 (562)
Q Consensus 443 -l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~--~~~~~~~L~~L~i~~C~~ 516 (562)
+++|++|+|++|..-...+. .....+++|+.|+|++|+. ..... ....+++|++|++++|+.
T Consensus 454 ~~~~L~~L~L~~~~i~~~~~~-----------~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 454 YAKKMEMLSVAFAGDSDLGMH-----------HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HCTTCCEEEEESCCSSHHHHH-----------HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred hchhccEeeccCCCCcHHHHH-----------HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 77777777777653111111 0113478888888888875 32211 223468888888888875
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=1.9e-15 Score=144.81 Aligned_cols=173 Identities=24% Similarity=0.405 Sum_probs=140.7
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCC
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCEL 242 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 242 (562)
..+...+..+..+|... ..+++.|++.+|.+..++ .+..+++|++|++++|.++.++...|..+++|++|++++|.+
T Consensus 19 ~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred CEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence 44555566666655422 367999999999999886 488999999999999999999988889999999999999999
Q ss_pred cccCc-ccCCcccCcEEeCCCCCccccchh-hhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhccc
Q 046723 243 TKLPV-GISELVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEAS 320 (562)
Q Consensus 243 ~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 320 (562)
+.+|. .+..+++|++|++++|.++.+|.. ++.+++|++|++++| .+..+|...+..+++|++|++.+|.+..
T Consensus 98 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~----- 171 (270)
T 2o6q_A 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKR----- 171 (270)
T ss_dssp CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC-----
T ss_pred CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcE-----
Confidence 98865 468899999999999999987754 689999999999998 6888888778899999999999997653
Q ss_pred ccccccCCcccchhhhcCccccceeeEEEecccc
Q 046723 321 ENSILFGGGELIVEELLGLKHLEVISLTLRNSHG 354 (562)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 354 (562)
.....+..+++|+.|+++.+....
T Consensus 172 ----------~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 172 ----------VPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp ----------CCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ----------eChhHhccCCCcCEEECCCCcCCc
Confidence 122346667777777776654443
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=1e-15 Score=152.54 Aligned_cols=104 Identities=20% Similarity=0.278 Sum_probs=82.6
Q ss_pred ccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCc-ccCCcccCcEEeCCCCCcc-ccch-hhhCCCCCcEEecc
Q 046723 208 LLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPV-GISELVSLQHLDLSESDIE-ELPG-ELKALVNLKCLDLE 284 (562)
Q Consensus 208 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~-~lp~-~~~~l~~L~~L~l~ 284 (562)
-++++.+++.++.+|..+ .+++++|++++|+++.+|. .|.++++|++|+|++|.+. .+|. .+.++++++++...
T Consensus 11 ~~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 11 NRVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TTEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CCEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 367778888899888753 3689999999999999976 5788999999999999874 4664 35778888776655
Q ss_pred CcCCCCccchhhhcCCCCCCEEEecCCCcc
Q 046723 285 YTGNLITIPRQLISNLSRLQVLRMFGASHK 314 (562)
Q Consensus 285 ~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 314 (562)
++..+..+++..+..+++|++|++.+|.+.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred cCCcccccCchhhhhccccccccccccccc
Confidence 555788887776888999999999988765
No 87
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.63 E-value=1.3e-16 Score=171.14 Aligned_cols=298 Identities=16% Similarity=0.111 Sum_probs=154.0
Q ss_pred cccceEEecccc-cccc--CCCC-CCCccccEEEccccCccccchhh----hcCCCCCcEEEecCCC--Cc--ccCcccC
Q 046723 183 WEKARRLSLMQN-QIRN--LSEI-PTCPHLLTLFLNENNLRKIHNDF----FQFMPSLKVLNLSHCE--LT--KLPVGIS 250 (562)
Q Consensus 183 ~~~l~~L~l~~~-~~~~--l~~~-~~~~~L~~L~l~~~~l~~~~~~~----~~~l~~L~~L~l~~~~--~~--~lp~~~~ 250 (562)
+++++.|++.++ .+.. ++.+ ..+++|++|++++|.+++..... ...+++|++|++++|. +. .++..+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 346666666655 3322 2222 25666666666666554432222 2245566666666664 21 1222223
Q ss_pred CcccCcEEeCCCC-CccccchhhhCCCCCcEEeccCcCC-------------------CCc-----------cchhhhcC
Q 046723 251 ELVSLQHLDLSES-DIEELPGELKALVNLKCLDLEYTGN-------------------LIT-----------IPRQLISN 299 (562)
Q Consensus 251 ~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~-------------------l~~-----------~p~~~~~~ 299 (562)
.+++|++|++++| .+..+|..+..+++|++|++..+.. +.. ++. .+..
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~-~~~~ 287 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA-VYSV 287 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG-GHHH
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH-HHHh
Confidence 4566777777666 4445565666666666666543311 100 111 1123
Q ss_pred CCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeecc----
Q 046723 300 LSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQC---- 375 (562)
Q Consensus 300 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~---- 375 (562)
+++|++|++.+|... .......+..+++|+.|++..+ . ....+......+++|++|++.+
T Consensus 288 ~~~L~~L~L~~~~l~--------------~~~l~~~~~~~~~L~~L~l~~~-~-~~~~l~~l~~~~~~L~~L~L~~~~~~ 351 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQ--------------SYDLVKLLCQCPKLQRLWVLDY-I-EDAGLEVLASTCKDLRELRVFPSEPF 351 (594)
T ss_dssp HTTCCEEECTTCCCC--------------HHHHHHHHTTCTTCCEEEEEGG-G-HHHHHHHHHHHCTTCCEEEEECSCTT
T ss_pred hCCCCEEEccCCCCC--------------HHHHHHHHhcCCCcCEEeCcCc-c-CHHHHHHHHHhCCCCCEEEEecCccc
Confidence 455555555555422 1112223456677777777654 1 1122222222234677777743
Q ss_pred ----ccCCCccchhhhh-hhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEe-----cCCCCCCCcc------
Q 046723 376 ----FNDSTLLEVSALA-YLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEIC-----NCIKLKDLTF------ 439 (562)
Q Consensus 376 ----~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~-----~c~~l~~l~~------ 439 (562)
+...+...+..+. .+++|+.|.+ +|..+........ ...+++|+.|++. +|..+++.+.
T Consensus 352 g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l----~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~ 426 (594)
T 2p1m_B 352 VMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITI----ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA 426 (594)
T ss_dssp CSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHH----HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHH----HhhCCCcceeEeecccCCCcccccCCchhhHHHH
Confidence 3333333333332 3677777744 3434432211111 0236788888888 5666664321
Q ss_pred -ccccCCCceEEEecCcchhhhhcCCCCCCccccccCCC-CccccceeeccCCcCCcccCc-C-CCCCCCcceeeeccCC
Q 046723 440 -LVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLN-PFEKLQNLEVAGARNLKSIYW-K-PLPFPHLKAMSFLHCK 515 (562)
Q Consensus 440 -l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~c~~L~~~~~-~-~~~~~~L~~L~i~~C~ 515 (562)
+..+++|++|+|++ .+.+... ..+. .+++|+.|++++|. +..... . ...+++|++|++++|+
T Consensus 427 l~~~~~~L~~L~L~~--~l~~~~~-----------~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 427 IVEHCKDLRRLSLSG--LLTDKVF-----------EYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp HHHHCTTCCEEECCS--SCCHHHH-----------HHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred HHhhCCCccEEeecC--cccHHHH-----------HHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCC
Confidence 45678888888865 2222110 0111 37889999999886 322111 1 1347999999999998
Q ss_pred C
Q 046723 516 K 516 (562)
Q Consensus 516 ~ 516 (562)
.
T Consensus 493 ~ 493 (594)
T 2p1m_B 493 F 493 (594)
T ss_dssp C
T ss_pred C
Confidence 5
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=2.8e-15 Score=145.10 Aligned_cols=191 Identities=23% Similarity=0.223 Sum_probs=149.7
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCC
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCEL 242 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 242 (562)
..+.+.+..+..+|... ..+++.|++++|.+..++ .+..+++|++|++++|.++.++. ...+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l 89 (290)
T 1p9a_G 13 LEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQL 89 (290)
T ss_dssp CEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCC
T ss_pred cEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcC
Confidence 34445555555555322 368999999999998874 57899999999999999998876 37899999999999999
Q ss_pred cccCcccCCcccCcEEeCCCCCccccch-hhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccc
Q 046723 243 TKLPVGISELVSLQHLDLSESDIEELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASE 321 (562)
Q Consensus 243 ~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 321 (562)
+.+|..+..+++|++|++++|.++.+|. .+..+++|++|++++| .+..+|...+..+++|++|++.+|.+..+
T Consensus 90 ~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l----- 163 (290)
T 1p9a_G 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTEL----- 163 (290)
T ss_dssp SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCC-----
T ss_pred CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCcc-----
Confidence 9999999999999999999999998874 5889999999999998 67888887788999999999999987631
Q ss_pred cccccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeecccc
Q 046723 322 NSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFN 377 (562)
Q Consensus 322 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 377 (562)
....+..+++|+.|+++.+....++...... .+|+.+++.+++
T Consensus 164 ----------~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~---~~L~~l~L~~Np 206 (290)
T 1p9a_G 164 ----------PAGLLNGLENLDTLLLQENSLYTIPKGFFGS---HLLPFAFLHGNP 206 (290)
T ss_dssp ----------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---CCCSEEECCSCC
T ss_pred ----------CHHHhcCcCCCCEEECCCCcCCccChhhccc---ccCCeEEeCCCC
Confidence 2234567888888888877766554322211 145555555443
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=3.5e-15 Score=135.74 Aligned_cols=152 Identities=17% Similarity=0.235 Sum_probs=130.7
Q ss_pred cccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcc-cCcccCCcccCcEEe
Q 046723 181 RGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTK-LPVGISELVSLQHLD 259 (562)
Q Consensus 181 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~ 259 (562)
..+.+++.|++.++.+..++.+..+++|++|++++|.++..+. +..+++|++|++++|.++. .|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 4567899999999999998989999999999999998877653 8899999999999999985 688899999999999
Q ss_pred CCCCCccc-cchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcC
Q 046723 260 LSESDIEE-LPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLG 338 (562)
Q Consensus 260 l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (562)
+++|.++. .|..++.+++|++|++++|..+..+|. +..+++|++|++.+|.+.. +..+..
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~-----------------~~~l~~ 179 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD-----------------YRGIED 179 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC-----------------CTTGGG
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC-----------------hHHhcc
Confidence 99999984 677899999999999999965888874 8899999999999997653 236778
Q ss_pred ccccceeeEEEeccc
Q 046723 339 LKHLEVISLTLRNSH 353 (562)
Q Consensus 339 l~~L~~L~l~~~~~~ 353 (562)
+++|+.|+++++.+.
T Consensus 180 l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 180 FPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSCCEEEECBC---
T ss_pred CCCCCEEEeeCcccC
Confidence 889999998877654
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=1.4e-16 Score=161.15 Aligned_cols=85 Identities=15% Similarity=0.146 Sum_probs=50.5
Q ss_pred CCCCccccEEEccccCccccchh----hhcCCCCCcEEEecCCCCcc----cCccc-------CCcccCcEEeCCCCCcc
Q 046723 202 IPTCPHLLTLFLNENNLRKIHND----FFQFMPSLKVLNLSHCELTK----LPVGI-------SELVSLQHLDLSESDIE 266 (562)
Q Consensus 202 ~~~~~~L~~L~l~~~~l~~~~~~----~~~~l~~L~~L~l~~~~~~~----lp~~~-------~~l~~L~~L~l~~~~l~ 266 (562)
+..+++|++|++++|.+...... .+..+++|++|++++|.+.. +|..+ ..+++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 34556677777776666543222 24566677777777654432 23333 55666777777666665
Q ss_pred c-----cchhhhCCCCCcEEeccCc
Q 046723 267 E-----LPGELKALVNLKCLDLEYT 286 (562)
Q Consensus 267 ~-----lp~~~~~l~~L~~L~l~~~ 286 (562)
. +|..+..+++|++|++++|
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCC
Confidence 4 5556666666777776666
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=3.5e-15 Score=144.54 Aligned_cols=152 Identities=23% Similarity=0.343 Sum_probs=112.9
Q ss_pred ccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEe
Q 046723 180 VRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLD 259 (562)
Q Consensus 180 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 259 (562)
...+.+++.|++.++.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++|.++.+|. +..+++|++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 34567788888888888888777788888888888888887766 7788888888888888877654 78888888888
Q ss_pred CCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCc
Q 046723 260 LSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGL 339 (562)
Q Consensus 260 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 339 (562)
+++|.++.++ .+..+++|++|++++| .+..++. +..+++|++|++++|.+.. ...+..+
T Consensus 119 L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~-----------------~~~l~~l 177 (291)
T 1h6t_A 119 LEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISD-----------------IVPLAGL 177 (291)
T ss_dssp CTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCC-----------------CGGGTTC
T ss_pred CCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCcccc-----------------chhhcCC
Confidence 8888887764 6778888888888877 5666642 7778888888888876553 1126666
Q ss_pred cccceeeEEEecccch
Q 046723 340 KHLEVISLTLRNSHGL 355 (562)
Q Consensus 340 ~~L~~L~l~~~~~~~~ 355 (562)
++|+.|+++.+....+
T Consensus 178 ~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 178 TKLQNLYLSKNHISDL 193 (291)
T ss_dssp TTCCEEECCSSCCCBC
T ss_pred CccCEEECCCCcCCCC
Confidence 6677666665554443
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.61 E-value=2.1e-16 Score=159.99 Aligned_cols=245 Identities=16% Similarity=0.188 Sum_probs=167.1
Q ss_pred ccccCccccchhhhcCCCCCcEEEecCCCCcc-----cCcccCCcccCcEEeCCCCCcc----ccchhh-------hCCC
Q 046723 213 LNENNLRKIHNDFFQFMPSLKVLNLSHCELTK-----LPVGISELVSLQHLDLSESDIE----ELPGEL-------KALV 276 (562)
Q Consensus 213 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~l~----~lp~~~-------~~l~ 276 (562)
+....+..+... +..+++|++|++++|.+.. ++..+..+++|++|++++|.+. .+|..+ ..++
T Consensus 16 l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 16 ITTEDEKSVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp CCSHHHHTTSHH-HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred CCHHHHHHHHHH-HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence 334444445443 7789999999999998874 4456788999999999997554 345444 7899
Q ss_pred CCcEEeccCcCCCCc-----cchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCc---------ccc
Q 046723 277 NLKCLDLEYTGNLIT-----IPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGL---------KHL 342 (562)
Q Consensus 277 ~L~~L~l~~~~~l~~-----~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---------~~L 342 (562)
+|++|++++|. +.. +|.. +.++++|++|++++|.+.... .......+..+ ++|
T Consensus 95 ~L~~L~Ls~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~-----------~~~l~~~l~~l~~~~~~~~~~~L 161 (386)
T 2ca6_A 95 KLHTVRLSDNA-FGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQA-----------GAKIARALQELAVNKKAKNAPPL 161 (386)
T ss_dssp TCCEEECCSCC-CCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHH-----------HHHHHHHHHHHHHHHHHHTCCCC
T ss_pred cccEEECCCCc-CCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHH-----------HHHHHHHHHHHhhhhhcccCCCC
Confidence 99999999984 444 5544 788999999999999865310 01123334444 889
Q ss_pred ceeeEEEeccc--chHHHHhhhhhhccccceeeccccCCCcc---chh-hhhhhcccCeeeeccccccc-----eeeccc
Q 046723 343 EVISLTLRNSH--GLQSFLRSWKLRRCTRALLLQCFNDSTLL---EVS-ALAYLKQLNRLQIANSVILE-----ELKMDY 411 (562)
Q Consensus 343 ~~L~l~~~~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~~-~l~~l~~L~~L~l~~~~~l~-----~l~~~~ 411 (562)
+.|+++.+... .++.+.......++|++|++++|.....- ... .+..+++|+.|+++++ .+. .++...
T Consensus 162 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIAL 240 (386)
T ss_dssp CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHG
T ss_pred cEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHH
Confidence 99999888774 55555454555558999999887543111 111 4667889999999887 442 222222
Q ss_pred hhhhhhhhhccccEEEEecCCCCCCC------ccc--cccCCCceEEEecCcchh----hhhcCCCCCCccccccCC-CC
Q 046723 412 AEEVQQFAFRSLNMVEICNCIKLKDL------TFL--VFAPNLKSIKVGICHAME----EIASEGKFAEVPEVMANL-NP 478 (562)
Q Consensus 412 ~~~~~~~~~~~L~~L~L~~c~~l~~l------~~l--~~l~~L~~L~L~~c~~l~----~l~~~~~~~~~~~~~~~~-~~ 478 (562)
..+++|++|+|++| .++.. ..+ +.+++|++|+|++|..-. .++. .+ ..
T Consensus 241 ------~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~------------~l~~~ 301 (386)
T 2ca6_A 241 ------KSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT------------VIDEK 301 (386)
T ss_dssp ------GGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH------------HHHHH
T ss_pred ------ccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH------------HHHhc
Confidence 23788999999998 45553 233 338899999998876433 2432 22 34
Q ss_pred ccccceeeccCCc
Q 046723 479 FEKLQNLEVAGAR 491 (562)
Q Consensus 479 ~~~L~~L~l~~c~ 491 (562)
+++|+.|++++|+
T Consensus 302 l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 302 MPDLLFLELNGNR 314 (386)
T ss_dssp CTTCCEEECTTSB
T ss_pred CCCceEEEccCCc
Confidence 7889999998875
No 93
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.61 E-value=1e-15 Score=178.52 Aligned_cols=142 Identities=21% Similarity=0.240 Sum_probs=120.8
Q ss_pred ChhHHHHHHHHHHHcCCchhHHHHHHHHhcCCCChhHHHHHHHHHhccCCCC-CC----CccchhhhhhhhccCCCchhh
Q 046723 4 HPDILQLAQTAARECGGLPLALITIGRAMACKKTPEEWSYAIEVLRTSSSQF-PG----LGNEVYPLLKFSYDSLPSDTI 78 (562)
Q Consensus 4 ~~~l~~i~~~i~~~c~GlPLai~~ig~~L~~~~~~~~W~~~l~~l~~~~~~~-~~----~~~~i~~~L~~sy~~L~~~~~ 78 (562)
++++++++++|+++|+|+||||+++|+.|+.+ . ..|+.+++.+....+.. .. ..+.+..+|.+||+.||++ .
T Consensus 303 ~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~-~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~ 379 (1249)
T 3sfz_A 303 KEDLPAEAHSIIKECKGSPLVVSLIGALLRDF-P-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-I 379 (1249)
T ss_dssp STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHS-S-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-T
T ss_pred hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcC-h-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-H
Confidence 45677889999999999999999999999974 3 58999999998775432 11 1246899999999999996 9
Q ss_pred hhhhhhhcccCCCccccHHHHHHHHHHCCCcccCCCchhhHhhHHHHHHHHHhccccccCCC---cEEEchhHHHHHHHH
Q 046723 79 RSCHLYCSLYPEDYCISKEKLIDCWIGERLLTERDRTGEQKEGYHILGILLHACLLEEGGGG---EVKMHDVIRDMALWI 155 (562)
Q Consensus 79 k~cfl~~a~fp~~~~~~~~~Li~~wiaeg~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~---~~~mhdl~~~l~~~~ 155 (562)
|.||+|||+||+++.|++..++.+|.++ ++.+..++++|++++|++....+ .|+||+++|++++..
T Consensus 380 ~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~ 448 (1249)
T 3sfz_A 380 KDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEK 448 (1249)
T ss_dssp HHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHH
T ss_pred HHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhh
Confidence 9999999999999999999999999655 46788999999999999877444 499999999999988
Q ss_pred hccc
Q 046723 156 ACDI 159 (562)
Q Consensus 156 ~~~~ 159 (562)
+.++
T Consensus 449 ~~~~ 452 (1249)
T 3sfz_A 449 NRSQ 452 (1249)
T ss_dssp TGGG
T ss_pred hhHH
Confidence 7654
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=3.2e-15 Score=146.34 Aligned_cols=226 Identities=12% Similarity=0.061 Sum_probs=136.3
Q ss_pred cccEEEccccCccccchh---hhcCCCCCcEEEecCCCCc-ccCccc--CCcccCcEEeCCCCCccc-cc----hhhhCC
Q 046723 207 HLLTLFLNENNLRKIHND---FFQFMPSLKVLNLSHCELT-KLPVGI--SELVSLQHLDLSESDIEE-LP----GELKAL 275 (562)
Q Consensus 207 ~L~~L~l~~~~l~~~~~~---~~~~l~~L~~L~l~~~~~~-~lp~~~--~~l~~L~~L~l~~~~l~~-lp----~~~~~l 275 (562)
.++.+.+.+..+...... .+..+++|++|++++|.++ ..|..+ ..+++|++|++++|.+.. .| ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 456666666655421100 0223567999999999887 456666 889999999999998874 22 234578
Q ss_pred CCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEecccch
Q 046723 276 VNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHGL 355 (562)
Q Consensus 276 ~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 355 (562)
++|++|++++| .+..++...++++++|++|++++|...... .......++.+++|+.|+++.+....+
T Consensus 145 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~~~~~l~~L~~L~Ls~N~l~~l 212 (310)
T 4glp_A 145 PGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGER-----------GLMAALCPHKFPAIQNLALRNTGMETP 212 (310)
T ss_dssp SCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHH-----------HHHTTSCTTSSCCCCSCBCCSSCCCCH
T ss_pred cCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccch-----------hhhHHHhhhcCCCCCEEECCCCCCCch
Confidence 89999999988 566666655888999999999998754200 000112235778888888888777665
Q ss_pred HHHHhh-hhhhccccceeeccccCCCccc--hhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCC
Q 046723 356 QSFLRS-WKLRRCTRALLLQCFNDSTLLE--VSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCI 432 (562)
Q Consensus 356 ~~l~~~-~~~~~~L~~L~l~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~ 432 (562)
+..... ....++|++|+++++.-....+ +..+..+++|+.|+++++ .++.++... +++|+.|+++++
T Consensus 213 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~--------~~~L~~L~Ls~N- 282 (310)
T 4glp_A 213 TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL--------PAKLRVLDLSSN- 282 (310)
T ss_dssp HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC--------CSCCSCEECCSC-
T ss_pred HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh--------cCCCCEEECCCC-
Confidence 553222 1223366666666655433311 111222246666666555 444443322 345666666666
Q ss_pred CCCCCccccccCCCceEEEecC
Q 046723 433 KLKDLTFLVFAPNLKSIKVGIC 454 (562)
Q Consensus 433 ~l~~l~~l~~l~~L~~L~L~~c 454 (562)
.++.++.+..+++|+.|+++++
T Consensus 283 ~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 283 RLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CCCSCCCTTSCCCCSCEECSST
T ss_pred cCCCCchhhhCCCccEEECcCC
Confidence 4555444555566666666553
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=4e-15 Score=149.07 Aligned_cols=242 Identities=17% Similarity=0.187 Sum_probs=119.6
Q ss_pred ccccEEEccccCccccch----hhhcCCC-CCcEEEecCCCCccc-CcccCCc-----ccCcEEeCCCCCccccchh---
Q 046723 206 PHLLTLFLNENNLRKIHN----DFFQFMP-SLKVLNLSHCELTKL-PVGISEL-----VSLQHLDLSESDIEELPGE--- 271 (562)
Q Consensus 206 ~~L~~L~l~~~~l~~~~~----~~~~~l~-~L~~L~l~~~~~~~l-p~~~~~l-----~~L~~L~l~~~~l~~lp~~--- 271 (562)
++|++|++++|.++..+. ..+..++ +|++|++++|.++.. +..+..+ ++|++|++++|.++..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 346666666666665554 4455555 666666666665543 3333332 5666666666665533221
Q ss_pred --hhCC-CCCcEEeccCcCCCCccchhhh----cC-CCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccc
Q 046723 272 --LKAL-VNLKCLDLEYTGNLITIPRQLI----SN-LSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLE 343 (562)
Q Consensus 272 --~~~l-~~L~~L~l~~~~~l~~~p~~~~----~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (562)
+..+ ++|++|++++| .+...+...+ .. .++|++|++++|.+... ........+..++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-----------~~~~l~~~l~~~~--- 166 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK-----------SSDELIQILAAIP--- 166 (362)
T ss_dssp HHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS-----------CHHHHHHHHHTSC---
T ss_pred HHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH-----------HHHHHHHHHhcCC---
Confidence 3333 56666666665 3444333212 22 24566666666544320 0001122222222
Q ss_pred eeeEEEecccchHHHHhhhhhhccccceeeccccCCCccc--h-hhhhhh-cccCeeeeccccccceeeccchhhhhhhh
Q 046723 344 VISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLE--V-SALAYL-KQLNRLQIANSVILEELKMDYAEEVQQFA 419 (562)
Q Consensus 344 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~-~~l~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 419 (562)
.+|++|++++|.-..... + ..+..+ ++|+.|+++++ .+...........-...
T Consensus 167 ----------------------~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~ 223 (362)
T 3goz_A 167 ----------------------ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSI 223 (362)
T ss_dssp ----------------------TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHS
T ss_pred ----------------------ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcC
Confidence 255555655543221111 0 122333 47888888776 44432211111000011
Q ss_pred hccccEEEEecCCCCCCCc------cccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCCc
Q 046723 420 FRSLNMVEICNCIKLKDLT------FLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGAR 491 (562)
Q Consensus 420 ~~~L~~L~L~~c~~l~~l~------~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 491 (562)
.++|++|++++| .+.+.. .+..+++|++|++++|. +..+.. ............+++|+.|+++++.
T Consensus 224 ~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~----~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 224 PNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSK----EQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCH----HHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCH----HHHHHHHHHhccCCceEEEecCCCc
Confidence 357888888888 565532 24567888999988875 111100 0000111245577888888888764
No 96
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=1.7e-15 Score=148.40 Aligned_cols=130 Identities=21% Similarity=0.246 Sum_probs=84.1
Q ss_pred cccceEEecccccccc-CCC-C--CCCccccEEEccccCccccchhhhcCC-----CCCcEEEecCCCCcccC-cccCCc
Q 046723 183 WEKARRLSLMQNQIRN-LSE-I--PTCPHLLTLFLNENNLRKIHNDFFQFM-----PSLKVLNLSHCELTKLP-VGISEL 252 (562)
Q Consensus 183 ~~~l~~L~l~~~~~~~-l~~-~--~~~~~L~~L~l~~~~l~~~~~~~~~~l-----~~L~~L~l~~~~~~~lp-~~~~~l 252 (562)
+.+++.|++.+|.+.. ++. + ..+++|++|++++|.++..+. .+..+ ++|++|++++|.++.++ ..++.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDA-WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSS-HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhH-HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4567777777777663 332 2 567777777777777776643 34444 77777777777777664 567777
Q ss_pred ccCcEEeCCCCCccc---cchhh--hCCCCCcEEeccCcCCCC---ccchhhhcCCCCCCEEEecCCCcc
Q 046723 253 VSLQHLDLSESDIEE---LPGEL--KALVNLKCLDLEYTGNLI---TIPRQLISNLSRLQVLRMFGASHK 314 (562)
Q Consensus 253 ~~L~~L~l~~~~l~~---lp~~~--~~l~~L~~L~l~~~~~l~---~~p~~~~~~l~~L~~L~l~~~~~~ 314 (562)
++|++|++++|.+.. +|..+ +.+++|++|++++| .+. .++...+.++++|++|++++|.+.
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLR 241 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCC
Confidence 777777777776542 34444 66777777777776 444 233343456677777777777654
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=1.6e-14 Score=136.74 Aligned_cols=173 Identities=24% Similarity=0.293 Sum_probs=131.2
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCC
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCEL 242 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 242 (562)
..+...+..+..+|... ..+++.|++.+|.+..++ .+..+++|++|++++|.++.+++..+..+++|++|++++|.+
T Consensus 17 ~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp TEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred eEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence 34555555555555422 257888888888888764 467888899999998888888877788888999999998888
Q ss_pred cccCc-ccCCcccCcEEeCCCCCccccchh-hhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhccc
Q 046723 243 TKLPV-GISELVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEAS 320 (562)
Q Consensus 243 ~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 320 (562)
+.+|. .+..+++|++|++++|.++.+|.. +..+++|++|++++| .+..+|...++++++|++|++.+|.+..
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~----- 169 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQS----- 169 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC-----
T ss_pred cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCc-----
Confidence 87754 467888899999998888887765 577888999999887 6777777657888889999998887653
Q ss_pred ccccccCCcccchhhhcCccccceeeEEEecccc
Q 046723 321 ENSILFGGGELIVEELLGLKHLEVISLTLRNSHG 354 (562)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 354 (562)
.....+..+++|+.|+++++....
T Consensus 170 ----------~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 170 ----------VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp ----------CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ----------cCHHHHhCCCCCCEEEeeCCceeC
Confidence 123356777888888887766543
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=3.7e-14 Score=137.29 Aligned_cols=166 Identities=23% Similarity=0.367 Sum_probs=144.9
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcc
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTK 244 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 244 (562)
+.+...+..+...+.+..+++++.|++++|.+..++.+..+++|++|++++|.++.++. +..+++|++|++++|.++.
T Consensus 49 ~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~i~~ 126 (291)
T 1h6t_A 49 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISD 126 (291)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCCC
T ss_pred cEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCCcCCC
Confidence 55566666777777788889999999999999998889999999999999999998765 8999999999999999998
Q ss_pred cCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhccccccc
Q 046723 245 LPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSI 324 (562)
Q Consensus 245 lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 324 (562)
+ ..+..+++|++|++++|.++.+ ..++.+++|++|++++| .+..++. +..+++|++|++.+|.+..
T Consensus 127 ~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~~--------- 192 (291)
T 1h6t_A 127 I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISD--------- 192 (291)
T ss_dssp C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCB---------
T ss_pred C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCCC---------
Confidence 8 4688999999999999999988 57899999999999998 6777776 8899999999999997763
Q ss_pred ccCCcccchhhhcCccccceeeEEEecccc
Q 046723 325 LFGGGELIVEELLGLKHLEVISLTLRNSHG 354 (562)
Q Consensus 325 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 354 (562)
+..+..+++|+.|+++++....
T Consensus 193 --------l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 --------LRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --------CGGGTTCTTCSEEEEEEEEEEC
T ss_pred --------ChhhccCCCCCEEECcCCcccC
Confidence 3458889999999999876654
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=3.8e-15 Score=158.22 Aligned_cols=173 Identities=23% Similarity=0.305 Sum_probs=138.9
Q ss_pred CCccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcE
Q 046723 178 PDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQH 257 (562)
Q Consensus 178 ~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 257 (562)
.....+.+++.|++.++.+..++.+..+++|+.|+|++|.+..+++ +..+++|++|+|++|.+..+| .+..+++|++
T Consensus 37 ~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 37 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp ECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred cchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 3455677889999999999999888899999999999999988876 788999999999999988876 6889999999
Q ss_pred EeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhc
Q 046723 258 LDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELL 337 (562)
Q Consensus 258 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (562)
|+|++|.+..++ .+..+++|+.|++++| .+..++. +..+++|+.|++++|.+.. .. .+.
T Consensus 114 L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~----------------~~-~l~ 172 (605)
T 1m9s_A 114 LSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISD----------------IV-PLA 172 (605)
T ss_dssp EECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCCC----------------CG-GGT
T ss_pred EEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCCC----------------ch-hhc
Confidence 999999998875 6888999999999988 5666643 8889999999999887653 11 277
Q ss_pred CccccceeeEEEecccchHHHHhhhhhhccccceeeccccC
Q 046723 338 GLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFND 378 (562)
Q Consensus 338 ~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 378 (562)
.+++|+.|+++.+.+..++.+ ..+++|+.|++++|..
T Consensus 173 ~l~~L~~L~Ls~N~i~~l~~l----~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDLRAL----AGLKNLDVLELFSQEC 209 (605)
T ss_dssp TCTTCCEEECCSSCCCBCGGG----TTCTTCSEEECCSEEE
T ss_pred cCCCCCEEECcCCCCCCChHH----ccCCCCCEEEccCCcC
Confidence 888888888888777665432 2233677777776543
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=2.4e-14 Score=135.54 Aligned_cols=154 Identities=19% Similarity=0.269 Sum_probs=126.1
Q ss_pred cceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCc-ccCCcccCcEEeCCCC
Q 046723 185 KARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPV-GISELVSLQHLDLSES 263 (562)
Q Consensus 185 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~ 263 (562)
..+.+++.++.++.+|... .++++.|+++++.+..+++..+..+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 5577899999888887532 2789999999999999988889999999999999999987754 5789999999999999
Q ss_pred Cccccch-hhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCcccc
Q 046723 264 DIEELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHL 342 (562)
Q Consensus 264 ~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 342 (562)
.++.+|. .+..+++|++|++++| .+..+|...+.++++|++|++.+|.+.. .....++.+++|
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~~~~l~~L 157 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQS---------------IPAGAFDKLTNL 157 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC---------------CCTTTTTTCTTC
T ss_pred cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCc---------------cCHHHcCcCcCC
Confidence 9998875 4688999999999998 7788888767899999999999997653 122356677777
Q ss_pred ceeeEEEecccch
Q 046723 343 EVISLTLRNSHGL 355 (562)
Q Consensus 343 ~~L~l~~~~~~~~ 355 (562)
+.|+++.+....+
T Consensus 158 ~~L~L~~N~l~~~ 170 (251)
T 3m19_A 158 QTLSLSTNQLQSV 170 (251)
T ss_dssp CEEECCSSCCSCC
T ss_pred CEEECCCCcCCcc
Confidence 7777776655443
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=1.3e-14 Score=154.21 Aligned_cols=164 Identities=23% Similarity=0.376 Sum_probs=117.2
Q ss_pred EEeeccccccCCCccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccC
Q 046723 167 FVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP 246 (562)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp 246 (562)
+.+.+..+...+.+..+++++.|++++|.+..++.+..+++|+.|+|++|.+..++. +..+++|++|++++|.+..++
T Consensus 48 L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~ 125 (605)
T 1m9s_A 48 IIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDIN 125 (605)
T ss_dssp CBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTT--STTCTTCCEEECTTSCCCCCG
T ss_pred EECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChh--hccCCCCCEEEecCCCCCCCc
Confidence 444455555566677777788888888877777767777888888888777777653 677788888888888777763
Q ss_pred cccCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhccccccccc
Q 046723 247 VGISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILF 326 (562)
Q Consensus 247 ~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 326 (562)
.+..+++|+.|+|++|.+..+ ..++.+++|+.|++++| .+..+++ +..+++|+.|++++|.+..
T Consensus 126 -~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~----------- 189 (605)
T 1m9s_A 126 -GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISD----------- 189 (605)
T ss_dssp -GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCB-----------
T ss_pred -cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCCCC-----------
Confidence 477777888888888877776 46777788888888877 4555554 6777888888887776542
Q ss_pred CCcccchhhhcCccccceeeEEEecccc
Q 046723 327 GGGELIVEELLGLKHLEVISLTLRNSHG 354 (562)
Q Consensus 327 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 354 (562)
+..+..+++|+.|+++.+.+..
T Consensus 190 ------l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 190 ------LRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ------CGGGTTCTTCSEEECCSEEEEC
T ss_pred ------ChHHccCCCCCEEEccCCcCcC
Confidence 2456777777777777665543
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=4e-14 Score=134.83 Aligned_cols=154 Identities=21% Similarity=0.264 Sum_probs=129.8
Q ss_pred CCCccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCc
Q 046723 177 APDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQ 256 (562)
Q Consensus 177 ~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~ 256 (562)
.+.+..+.+++.|++.+|.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++|.++.+|.... .+|+
T Consensus 34 ~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~ 109 (263)
T 1xeu_A 34 LVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLS 109 (263)
T ss_dssp EECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCC
T ss_pred ccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--Cccc
Confidence 33456678899999999999999888899999999999999998877 8899999999999999988876443 8999
Q ss_pred EEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhh
Q 046723 257 HLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEEL 336 (562)
Q Consensus 257 ~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (562)
+|++++|.++.++ .++.+++|++|++++| .+..++. +..+++|++|++.+|.+.. ...+
T Consensus 110 ~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~-----------------~~~l 168 (263)
T 1xeu_A 110 RLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITN-----------------TGGL 168 (263)
T ss_dssp EEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCB-----------------CTTS
T ss_pred EEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcc-----------------hHHh
Confidence 9999999999876 6889999999999998 6777763 7889999999999987763 2567
Q ss_pred cCccccceeeEEEecccch
Q 046723 337 LGLKHLEVISLTLRNSHGL 355 (562)
Q Consensus 337 ~~l~~L~~L~l~~~~~~~~ 355 (562)
..+++|+.|+++++.....
T Consensus 169 ~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTCCCCCEEEEEEEEEECC
T ss_pred ccCCCCCEEeCCCCcccCC
Confidence 7888899999988766543
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=8.2e-14 Score=129.78 Aligned_cols=145 Identities=28% Similarity=0.370 Sum_probs=103.7
Q ss_pred EeeccccccCCCccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCccc
Q 046723 168 VYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKL 245 (562)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~l 245 (562)
...+..+..+|.. -..+++.|++++|.+..+. .+..+++|++|++++|.+..++...|..+++|++|++++|.++.+
T Consensus 25 ~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 25 DCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp ECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred EccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc
Confidence 3334444444432 2367778888888777763 366777888888888888777777677788888888888877777
Q ss_pred Ccc-cCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCcc
Q 046723 246 PVG-ISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHK 314 (562)
Q Consensus 246 p~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 314 (562)
|.. +..+++|++|++++|.++.+|..+..+++|++|++++| .+..+|...+..+++|+.|++.+|...
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 544 56778888888888888777777777888888888876 566777655777788888888777644
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=8e-14 Score=126.67 Aligned_cols=146 Identities=18% Similarity=0.286 Sum_probs=126.3
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcc
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTK 244 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 244 (562)
..+...+..+...+.+..+++++.|++.+|.+..++.+..+++|++|++++|.++...+..+..+++|++|++++|.++.
T Consensus 47 ~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 126 (197)
T 4ezg_A 47 TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126 (197)
T ss_dssp CEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred cEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence 55666677777777888899999999999999999899999999999999999987544558999999999999999985
Q ss_pred -cCcccCCcccCcEEeCCCCC-ccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCcc
Q 046723 245 -LPVGISELVSLQHLDLSESD-IEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHK 314 (562)
Q Consensus 245 -lp~~~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 314 (562)
.|..++.+++|++|++++|. +..+| .+..+++|++|++++| .+..++. +..+++|++|++.+|.+.
T Consensus 127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC---
T ss_pred HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCcccC
Confidence 67889999999999999997 88887 7899999999999998 5777773 889999999999998754
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=6.9e-14 Score=128.31 Aligned_cols=128 Identities=29% Similarity=0.480 Sum_probs=80.8
Q ss_pred ccceEEeccccccccCCC--CCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcc-cCCcccCcEEeC
Q 046723 184 EKARRLSLMQNQIRNLSE--IPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVG-ISELVSLQHLDL 260 (562)
Q Consensus 184 ~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l 260 (562)
.+++.|++.+|.+..++. +..+++|++|++++|.++.++...+..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 456666666666666543 45666666666666666666665566666666666666666665443 456666666666
Q ss_pred CCCCccccchh-hhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCC
Q 046723 261 SESDIEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGAS 312 (562)
Q Consensus 261 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~ 312 (562)
++|.++.+|.. +..+++|++|++++| .+..++...+..+++|++|++.+|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence 66666665543 456666666666665 4555555545666666666666654
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=1.1e-14 Score=138.80 Aligned_cols=148 Identities=22% Similarity=0.320 Sum_probs=115.8
Q ss_pred ccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCC
Q 046723 182 GWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLS 261 (562)
Q Consensus 182 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 261 (562)
.+.++..+.+..+.++.++.+..+++|++|+++++.++.++. +..+++|++|++++|.++.+|. +..+++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 455677777888888887777888999999999998888863 7889999999999999888877 8889999999999
Q ss_pred CCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccc
Q 046723 262 ESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKH 341 (562)
Q Consensus 262 ~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 341 (562)
+|.++.+|.... ++|++|++++| .+..++. +.++++|++|++++|.+.. ...+..+++
T Consensus 94 ~N~l~~l~~~~~--~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~-----------------~~~l~~l~~ 151 (263)
T 1xeu_A 94 RNRLKNLNGIPS--ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLKS-----------------IVMLGFLSK 151 (263)
T ss_dssp SSCCSCCTTCCC--SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSCCCB-----------------CGGGGGCTT
T ss_pred CCccCCcCcccc--CcccEEEccCC-ccCCChh--hcCcccccEEECCCCcCCC-----------------ChHHccCCC
Confidence 998888875433 88999999988 6677764 7889999999999887653 234566666
Q ss_pred cceeeEEEecccc
Q 046723 342 LEVISLTLRNSHG 354 (562)
Q Consensus 342 L~~L~l~~~~~~~ 354 (562)
|+.|+++.+...+
T Consensus 152 L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 152 LEVLDLHGNEITN 164 (263)
T ss_dssp CCEEECTTSCCCB
T ss_pred CCEEECCCCcCcc
Confidence 6666665544433
No 107
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=2.7e-14 Score=139.75 Aligned_cols=130 Identities=19% Similarity=0.148 Sum_probs=92.0
Q ss_pred ccceEEeccccccccC-C-CC--CCCccccEEEccccCccccch----hhhcCCCCCcEEEecCCCCcccC-cccCCccc
Q 046723 184 EKARRLSLMQNQIRNL-S-EI--PTCPHLLTLFLNENNLRKIHN----DFFQFMPSLKVLNLSHCELTKLP-VGISELVS 254 (562)
Q Consensus 184 ~~l~~L~l~~~~~~~l-~-~~--~~~~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~ 254 (562)
.+++.|++.+|.+... + .+ ..+++|++|++++|.++...+ ..+..+++|++|++++|.+..++ ..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 4588888888877653 2 23 678888888888888775321 23456888888888888887664 56778888
Q ss_pred CcEEeCCCCCccc---cchh--hhCCCCCcEEeccCcCCCCccchh---hhcCCCCCCEEEecCCCcc
Q 046723 255 LQHLDLSESDIEE---LPGE--LKALVNLKCLDLEYTGNLITIPRQ---LISNLSRLQVLRMFGASHK 314 (562)
Q Consensus 255 L~~L~l~~~~l~~---lp~~--~~~l~~L~~L~l~~~~~l~~~p~~---~~~~l~~L~~L~l~~~~~~ 314 (562)
|++|++++|.+.. ++.. ++.+++|++|++++| .+..++.. +++.+++|++|++++|.+.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~ 237 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLR 237 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCC
Confidence 8888888887653 3322 367888888888887 55555432 3567788888888888765
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=1.6e-13 Score=126.99 Aligned_cols=127 Identities=28% Similarity=0.342 Sum_probs=57.6
Q ss_pred cceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcc-cCCcccCcEEeCC
Q 046723 185 KARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVG-ISELVSLQHLDLS 261 (562)
Q Consensus 185 ~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~ 261 (562)
+++.|++.+|.+..++ .+..+++|++|++++|.++.+.+..|..+++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 4444444444444443 234444444444444444444333344444444444444444444433 2444444444444
Q ss_pred CCCcccc-chhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCC
Q 046723 262 ESDIEEL-PGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGAS 312 (562)
Q Consensus 262 ~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~ 312 (562)
+|.++.+ |..+..+++|++|++++| .+..++...+..+++|++|++.+|.
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 4444433 223444444444444444 3334443334444444444444443
No 109
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.51 E-value=1e-14 Score=157.42 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=97.5
Q ss_pred cCCchhHHHHHHHHhcCC-CChhHHHHHHHHHhccCCCCCCCccchhhhhhhhccCCCchhh-hhhhhhhcccCCCcccc
Q 046723 18 CGGLPLALITIGRAMACK-KTPEEWSYAIEVLRTSSSQFPGLGNEVYPLLKFSYDSLPSDTI-RSCHLYCSLYPEDYCIS 95 (562)
Q Consensus 18 c~GlPLai~~ig~~L~~~-~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~sy~~L~~~~~-k~cfl~~a~fp~~~~~~ 95 (562)
|+|+||||+++|+.|+.+ .+.++|+.+ ....+..+|++||+.||++ . |.||+|||+||+++.|.
T Consensus 323 CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~ 388 (1221)
T 1vt4_I 323 LTTNPRRLSIIAESIRDGLATWDNWKHV-------------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIP 388 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEE
T ss_pred hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCC
Confidence 999999999999999985 367888752 1258999999999999996 8 99999999999999999
Q ss_pred HHHHHHHHHHCCCcccCCCchhhHhhHHHHHHHHHhcccccc-CCCcEEEchhHHHHH
Q 046723 96 KEKLIDCWIGERLLTERDRTGEQKEGYHILGILLHACLLEEG-GGGEVKMHDVIRDMA 152 (562)
Q Consensus 96 ~~~Li~~wiaeg~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~-~~~~~~mhdl~~~l~ 152 (562)
++.++.+|.++| ++.+..++++|++++|++.. ....++|||++++++
T Consensus 389 ~elLa~LW~aeG----------eedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 389 TILLSLIWFDVI----------KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHCSSC----------SHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHhcCCC----------HHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 999999999887 23588899999999999986 357899999999865
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=3.1e-14 Score=142.53 Aligned_cols=158 Identities=17% Similarity=0.213 Sum_probs=114.8
Q ss_pred ccceEEeccccccccCC------CCCCCc-cccEEEccccCccccchhhhcCC-----CCCcEEEecCCCCcccCc-c--
Q 046723 184 EKARRLSLMQNQIRNLS------EIPTCP-HLLTLFLNENNLRKIHNDFFQFM-----PSLKVLNLSHCELTKLPV-G-- 248 (562)
Q Consensus 184 ~~l~~L~l~~~~~~~l~------~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l-----~~L~~L~l~~~~~~~lp~-~-- 248 (562)
.+++.|++++|.+...+ .+..++ +|++|++++|.++......+..+ ++|++|++++|.++..+. .
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 45999999999998864 356777 89999999999998766556554 999999999999886543 2
Q ss_pred --cCCc-ccCcEEeCCCCCccccch-h----hhC-CCCCcEEeccCcCCCCc-----cchhhhcCCC-CCCEEEecCCCc
Q 046723 249 --ISEL-VSLQHLDLSESDIEELPG-E----LKA-LVNLKCLDLEYTGNLIT-----IPRQLISNLS-RLQVLRMFGASH 313 (562)
Q Consensus 249 --~~~l-~~L~~L~l~~~~l~~lp~-~----~~~-l~~L~~L~l~~~~~l~~-----~p~~~~~~l~-~L~~L~l~~~~~ 313 (562)
+..+ ++|++|++++|.++..+. . +.. .++|++|++++| .+.. ++.. +..++ +|++|++++|.+
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQI-LAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHH-HHTSCTTCCEEECTTSCG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHH-HhcCCccccEeeecCCCC
Confidence 4445 899999999999986553 2 334 369999999998 4442 3333 45565 999999999987
Q ss_pred cchhcccccccccCCcccchhhhcCc-cccceeeEEEecccc
Q 046723 314 KAIKEASENSILFGGGELIVEELLGL-KHLEVISLTLRNSHG 354 (562)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~ 354 (562)
... ........+..+ ++|+.|+++.+....
T Consensus 180 ~~~-----------~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 180 ASK-----------NCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp GGS-----------CHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred chh-----------hHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 531 011122344555 478888877766544
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=1.5e-13 Score=127.19 Aligned_cols=150 Identities=19% Similarity=0.282 Sum_probs=126.4
Q ss_pred eEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCccc-CcccCCcccCcEEeCCCCCc
Q 046723 187 RRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKL-PVGISELVSLQHLDLSESDI 265 (562)
Q Consensus 187 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~l 265 (562)
+.++..++.++.+|.. -.++++.|++++|.++.+++..|..+++|++|++++|.++.+ |..+.++++|++|++++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 4677778888887752 237899999999999999887799999999999999999977 78899999999999999999
Q ss_pred cccchh-hhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccce
Q 046723 266 EELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEV 344 (562)
Q Consensus 266 ~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 344 (562)
+.+|.. +..+++|++|++++| .+..++...+..+++|++|++.+|.+..+ ....+..+++|+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTI---------------AKGTFSPLRAIQT 156 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC---------------CTTTTTTCTTCCE
T ss_pred CccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEE---------------CHHHHhCCCCCCE
Confidence 999876 578999999999998 67777666689999999999999987641 2335677888999
Q ss_pred eeEEEeccc
Q 046723 345 ISLTLRNSH 353 (562)
Q Consensus 345 L~l~~~~~~ 353 (562)
|+++++...
T Consensus 157 L~L~~N~~~ 165 (220)
T 2v9t_B 157 MHLAQNPFI 165 (220)
T ss_dssp EECCSSCEE
T ss_pred EEeCCCCcC
Confidence 888876653
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.48 E-value=3e-13 Score=125.08 Aligned_cols=125 Identities=18% Similarity=0.315 Sum_probs=61.8
Q ss_pred EEeccccccccCCCCCCCccccEEEccccCccccc-hhhhcCCCCCcEEEecCCCCcccCc-ccCCcccCcEEeCCCCCc
Q 046723 188 RLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIH-NDFFQFMPSLKVLNLSHCELTKLPV-GISELVSLQHLDLSESDI 265 (562)
Q Consensus 188 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~l 265 (562)
.++++++.++.+|.. -...++.|++++|.++.++ ...|..+++|++|++++|.++.++. .+..+++|++|++++|.+
T Consensus 15 ~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 444555555444431 1233455555555555442 2334555555555555555554433 455555555555555555
Q ss_pred cccchh-hhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCcc
Q 046723 266 EELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHK 314 (562)
Q Consensus 266 ~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 314 (562)
+.+|.. +..+++|++|++++| .+..+++..+.++++|++|++.+|.+.
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred CccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCC
Confidence 544432 455555555555554 334443333455555555555555443
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.47 E-value=2.8e-13 Score=124.21 Aligned_cols=149 Identities=26% Similarity=0.337 Sum_probs=120.8
Q ss_pred eEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcc-cCCcccCcEEeCCCCCc
Q 046723 187 RRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVG-ISELVSLQHLDLSESDI 265 (562)
Q Consensus 187 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~l 265 (562)
+.++..++.+..++. ...++|++|+++++.++.+++..+..+++|++|++++|+++.+|.. +..+++|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 345666666666653 2356899999999999999888889999999999999999988765 58899999999999999
Q ss_pred cccchh-hhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccce
Q 046723 266 EELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEV 344 (562)
Q Consensus 266 ~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 344 (562)
+.+|.. ++.+++|++|++++| .+..++...+.++++|++|++.+|.+.. .....+..+++|+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~---------------~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKS---------------VPDGVFDRLTSLQY 152 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC---------------CCTTTTTTCTTCCE
T ss_pred CccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccce---------------eCHHHhccCCCccE
Confidence 988765 689999999999998 6778887767899999999999987653 12234667788888
Q ss_pred eeEEEecc
Q 046723 345 ISLTLRNS 352 (562)
Q Consensus 345 L~l~~~~~ 352 (562)
|+++.+..
T Consensus 153 L~l~~N~~ 160 (208)
T 2o6s_A 153 IWLHDNPW 160 (208)
T ss_dssp EECCSCCB
T ss_pred EEecCCCe
Confidence 88776643
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=3e-13 Score=125.06 Aligned_cols=148 Identities=18% Similarity=0.222 Sum_probs=123.8
Q ss_pred cEEEeeccccccCCCccccccceEEeccccccccCCC---CCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCC
Q 046723 165 NFFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSE---IPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCE 241 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~---~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 241 (562)
..+...+..+..+|.. -...++.|++++|.++.++. +..+++|++|++++|.++.+++..|..+++|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 3455566666666542 23567899999999998732 6889999999999999999988779999999999999999
Q ss_pred CcccCc-ccCCcccCcEEeCCCCCcccc-chhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCcc
Q 046723 242 LTKLPV-GISELVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHK 314 (562)
Q Consensus 242 ~~~lp~-~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 314 (562)
++.+|. .+..+++|++|++++|.++.+ |..+..+++|++|++++| .+..+++..+..+++|++|++.+|...
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 998865 488999999999999999977 567889999999999998 677775555889999999999998765
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=6.1e-13 Score=123.86 Aligned_cols=150 Identities=25% Similarity=0.312 Sum_probs=125.5
Q ss_pred ceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcc-cCCcccCcEEeCCCCC
Q 046723 186 ARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVG-ISELVSLQHLDLSESD 264 (562)
Q Consensus 186 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 264 (562)
.+.++..++.+..+|.. -.++|++|++++|.++.+++..+..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 34678888888888752 348999999999999999887799999999999999999988754 6899999999999999
Q ss_pred ccccchh-hhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccc
Q 046723 265 IEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLE 343 (562)
Q Consensus 265 l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (562)
++.+|.. +..+++|++|++++| .+..+|.. +..+++|++|++.+|.+..+ ....+..+++|+
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~ 162 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSI---------------PHGAFDRLSSLT 162 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCC---------------CTTTTTTCTTCC
T ss_pred CCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCcc---------------CHHHHhCCCCCC
Confidence 9988765 588999999999998 67899877 78999999999999977631 224567788888
Q ss_pred eeeEEEeccc
Q 046723 344 VISLTLRNSH 353 (562)
Q Consensus 344 ~L~l~~~~~~ 353 (562)
.|++.++...
T Consensus 163 ~L~l~~N~~~ 172 (229)
T 3e6j_A 163 HAYLFGNPWD 172 (229)
T ss_dssp EEECTTSCBC
T ss_pred EEEeeCCCcc
Confidence 8888776543
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=3.2e-13 Score=119.29 Aligned_cols=129 Identities=24% Similarity=0.302 Sum_probs=100.7
Q ss_pred ccceEEeccccccc--cCCCC-CCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcc-cCcccCCcccCcEEe
Q 046723 184 EKARRLSLMQNQIR--NLSEI-PTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTK-LPVGISELVSLQHLD 259 (562)
Q Consensus 184 ~~l~~L~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~ 259 (562)
++++.|++.+|.+. .++.. ..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 57888888888887 66653 7788888888888888777 337788888888888888876 666666788888888
Q ss_pred CCCCCccccc--hhhhCCCCCcEEeccCcCCCCccch---hhhcCCCCCCEEEecCCCccc
Q 046723 260 LSESDIEELP--GELKALVNLKCLDLEYTGNLITIPR---QLISNLSRLQVLRMFGASHKA 315 (562)
Q Consensus 260 l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~~p~---~~~~~l~~L~~L~l~~~~~~~ 315 (562)
+++|.++.+| ..+..+++|++|++++| .+..+|. ..+..+++|++|++.+|....
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 8888888766 57788888888888887 5666665 447788888888888876543
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=8.4e-13 Score=138.67 Aligned_cols=114 Identities=23% Similarity=0.360 Sum_probs=84.5
Q ss_pred cceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCC
Q 046723 185 KARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESD 264 (562)
Q Consensus 185 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~ 264 (562)
+++.|++.+|.+..+|... +++|++|++++|.++.+| ..+++|++|++++|+++.+|. +++ +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 6777888888777776521 367888888888887776 346788888888888877777 655 78888888888
Q ss_pred ccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCcc
Q 046723 265 IEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHK 314 (562)
Q Consensus 265 l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 314 (562)
++.+|. .+++|++|++++| .+..+|. .+++|++|++++|.+.
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCS
T ss_pred CCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCCCC
Confidence 877776 5778888888877 5666665 4677888888877654
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=1.7e-13 Score=122.05 Aligned_cols=130 Identities=19% Similarity=0.280 Sum_probs=73.5
Q ss_pred cccccceEEeccccccccCCCCCCCc-cccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCccc-CCcccCcEE
Q 046723 181 RGWEKARRLSLMQNQIRNLSEIPTCP-HLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGI-SELVSLQHL 258 (562)
Q Consensus 181 ~~~~~l~~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~~l~~L~~L 258 (562)
....+++.|++.+|.++.++.+..+. +|++|++++|.++.++ .+..+++|++|++++|.++.+|..+ ..+++|++|
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 33455666666666666555544443 6666666666665552 2555666666666666666555443 556666666
Q ss_pred eCCCCCccccch--hhhCCCCCcEEeccCcCCCCccchh---hhcCCCCCCEEEecCCCc
Q 046723 259 DLSESDIEELPG--ELKALVNLKCLDLEYTGNLITIPRQ---LISNLSRLQVLRMFGASH 313 (562)
Q Consensus 259 ~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~~p~~---~~~~l~~L~~L~l~~~~~ 313 (562)
++++|.+..+|. .++.+++|++|++++| .+..+|.. .+..+++|+.|++.++..
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 666666665554 4555666666666655 34444432 345556666666555543
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=6.6e-13 Score=132.72 Aligned_cols=147 Identities=25% Similarity=0.332 Sum_probs=92.7
Q ss_pred EEEeeccccccCCCccccccceEEeccccccccCCC--CC-CCccccEEEccccCccccchhhhcCCCCCcEEEecCCCC
Q 046723 166 FFVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSE--IP-TCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCEL 242 (562)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 242 (562)
.+...+..+..+|.. -...++.|++++|.++.++. +. .+++|++|++++|.++.+++..|..+++|++|++++|.+
T Consensus 22 ~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 22 ILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp EEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 344444444444431 22456677777777766543 33 667777777777777776666667777777777777777
Q ss_pred cccCc-ccCCcccCcEEeCCCCCcccc-chhhhCCCCCcEEeccCcCCCCccchhhh---cCCCCCCEEEecCCCcc
Q 046723 243 TKLPV-GISELVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTGNLITIPRQLI---SNLSRLQVLRMFGASHK 314 (562)
Q Consensus 243 ~~lp~-~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~~---~~l~~L~~L~l~~~~~~ 314 (562)
+.++. .+..+.+|++|+|++|.+..+ |..+..+++|++|++++| .+..+|...+ ..+++|++|++++|.+.
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 66643 466677777777777777655 445666777777777766 5666666544 45677777777776554
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=9.3e-13 Score=131.66 Aligned_cols=177 Identities=20% Similarity=0.223 Sum_probs=137.1
Q ss_pred eEEeccccccccCCCCCCCccccEEEccccCccccchhhhc-CCCCCcEEEecCCCCcccC-cccCCcccCcEEeCCCCC
Q 046723 187 RRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQ-FMPSLKVLNLSHCELTKLP-VGISELVSLQHLDLSESD 264 (562)
Q Consensus 187 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~ 264 (562)
+.++..++.++.+|.. -...++.|++++|.++.++...+. .+++|++|++++|.++.++ ..+.++++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 5788888888888752 235699999999999999888777 8999999999999999886 468999999999999999
Q ss_pred ccccch-hhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccc
Q 046723 265 IEELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLE 343 (562)
Q Consensus 265 l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 343 (562)
++.+|. .+..+++|++|++++| .+..++...+.++++|++|++.+|.+..+ ....+..+..+++|+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l------------~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRF------------PVELIKDGNKLPKLM 166 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSC------------CGGGTC----CTTCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCee------------CHHHhcCcccCCcCC
Confidence 998876 4789999999999998 67777665589999999999999987642 111222336789999
Q ss_pred eeeEEEecccchHHH-HhhhhhhccccceeeccccC
Q 046723 344 VISLTLRNSHGLQSF-LRSWKLRRCTRALLLQCFND 378 (562)
Q Consensus 344 ~L~l~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~ 378 (562)
.|+++.+....++.- +...... .++.|++.++.-
T Consensus 167 ~L~L~~N~l~~l~~~~~~~l~~~-~l~~l~l~~N~~ 201 (361)
T 2xot_A 167 LLDLSSNKLKKLPLTDLQKLPAW-VKNGLYLHNNPL 201 (361)
T ss_dssp EEECCSSCCCCCCHHHHHHSCHH-HHTTEECCSSCE
T ss_pred EEECCCCCCCccCHHHhhhccHh-hcceEEecCCCc
Confidence 999999988876531 1111100 257788887653
No 121
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.41 E-value=4.3e-13 Score=143.47 Aligned_cols=137 Identities=22% Similarity=0.265 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHcCCchhHHHHHHHHhcCCCChhHHHHHHHHHhccCCC-CC----CCccchhhhhhhhccCCCchhhhh
Q 046723 6 DILQLAQTAARECGGLPLALITIGRAMACKKTPEEWSYAIEVLRTSSSQ-FP----GLGNEVYPLLKFSYDSLPSDTIRS 80 (562)
Q Consensus 6 ~l~~i~~~i~~~c~GlPLai~~ig~~L~~~~~~~~W~~~l~~l~~~~~~-~~----~~~~~i~~~L~~sy~~L~~~~~k~ 80 (562)
.+.+.+++|+++|+|+||||+.+|+.|+.+ ...|+.+++.+...... +. .....+..++..||+.||++ .|.
T Consensus 305 ~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~ 381 (591)
T 1z6t_A 305 DLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKD 381 (591)
T ss_dssp GSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THH
T ss_pred cccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHH
Confidence 345788999999999999999999999973 34799999998876432 11 11247889999999999996 999
Q ss_pred hhhhhcccCCCccccHHHHHHHHHHCCCcccCCCchhhHhhHHHHHHHHHhccccccC---CCcEEEchhHHHHHHHHh
Q 046723 81 CHLYCSLYPEDYCISKEKLIDCWIGERLLTERDRTGEQKEGYHILGILLHACLLEEGG---GGEVKMHDVIRDMALWIA 156 (562)
Q Consensus 81 cfl~~a~fp~~~~~~~~~Li~~wiaeg~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~---~~~~~mhdl~~~l~~~~~ 156 (562)
||+++|+||+|+.++...++.+|.++ .+.+..+++.|+++++++... ...|.||++++++++...
T Consensus 382 ~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 382 YYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHccccCCCCccCHHHHHHHhccC-----------HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 99999999999999999999999543 245678899999999998542 347999999999998763
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=4.1e-13 Score=115.95 Aligned_cols=123 Identities=27% Similarity=0.299 Sum_probs=78.1
Q ss_pred ccceEEeccccccc--cCCC-CCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcc-cCcccCCcccCcEEe
Q 046723 184 EKARRLSLMQNQIR--NLSE-IPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTK-LPVGISELVSLQHLD 259 (562)
Q Consensus 184 ~~l~~L~l~~~~~~--~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~ 259 (562)
.+++.|++.+|.+. .++. +..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56677777777666 4443 35666777777777666665 336666777777777776665 555555566777777
Q ss_pred CCCCCccccc--hhhhCCCCCcEEeccCcCCCCccch---hhhcCCCCCCEEEec
Q 046723 260 LSESDIEELP--GELKALVNLKCLDLEYTGNLITIPR---QLISNLSRLQVLRMF 309 (562)
Q Consensus 260 l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~~p~---~~~~~l~~L~~L~l~ 309 (562)
+++|.++.+| ..++.+++|++|++++| .+..+|. ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 7777666554 55666677777777666 4455554 345666666666654
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=7.6e-13 Score=139.00 Aligned_cols=187 Identities=21% Similarity=0.271 Sum_probs=126.0
Q ss_pred cccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCc
Q 046723 207 HLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYT 286 (562)
Q Consensus 207 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 286 (562)
+|+.|+++++.++.+|... +++|++|++++|.++.+| ..+++|++|++++|.++.+|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 7889999999888887653 378999999999888888 457889999999998888887 554 8999999987
Q ss_pred CCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEecccchHHHHhhhhhhc
Q 046723 287 GNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRR 366 (562)
Q Consensus 287 ~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~ 366 (562)
.+..+|. .+++|++|++++|.+.. ++. .+++|+.|+++++....++.
T Consensus 131 -~l~~lp~----~l~~L~~L~Ls~N~l~~----------------lp~---~l~~L~~L~Ls~N~L~~lp~--------- 177 (571)
T 3cvr_A 131 -QLTMLPE----LPALLEYINADNNQLTM----------------LPE---LPTSLEVLSVRNNQLTFLPE--------- 177 (571)
T ss_dssp -CCSCCCC----CCTTCCEEECCSSCCSC----------------CCC---CCTTCCEEECCSSCCSCCCC---------
T ss_pred -cCCCCCC----cCccccEEeCCCCccCc----------------CCC---cCCCcCEEECCCCCCCCcch---------
Confidence 5677776 57889999998887652 111 34556666555554443332
Q ss_pred cccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCCcc-ccccCC
Q 046723 367 CTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLTF-LVFAPN 445 (562)
Q Consensus 367 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-l~~l~~ 445 (562)
+. ++|+.|+++++ .+..++. +... .....+.|+.|+++++ .++.+|. +..+++
T Consensus 178 --------------------l~--~~L~~L~Ls~N-~L~~lp~-~~~~-L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~ 231 (571)
T 3cvr_A 178 --------------------LP--ESLEALDVSTN-LLESLPA-VPVR-NHHSEETEIFFRCREN-RITHIPENILSLDP 231 (571)
T ss_dssp --------------------CC--TTCCEEECCSS-CCSSCCC-CC---------CCEEEECCSS-CCCCCCGGGGGSCT
T ss_pred --------------------hh--CCCCEEECcCC-CCCchhh-HHHh-hhcccccceEEecCCC-cceecCHHHhcCCC
Confidence 11 45666666555 4444443 2110 0001233488888888 5666654 667888
Q ss_pred CceEEEecCcchhhhh
Q 046723 446 LKSIKVGICHAMEEIA 461 (562)
Q Consensus 446 L~~L~L~~c~~l~~l~ 461 (562)
|+.|+|++++.-..+|
T Consensus 232 L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 232 TCTIILEDNPLSSRIR 247 (571)
T ss_dssp TEEEECCSSSCCHHHH
T ss_pred CCEEEeeCCcCCCcCH
Confidence 8888888876544443
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=1e-12 Score=116.95 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=114.4
Q ss_pred cccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCccccchhh-hC
Q 046723 196 IRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELPGEL-KA 274 (562)
Q Consensus 196 ~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~-~~ 274 (562)
+...+.+..+.+|+.|++++|.++.++. .....++|++|++++|.++.+ ..++.+++|++|++++|.++.+|+.+ +.
T Consensus 9 i~~~~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 9 IEQAAQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp HHTSCEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred HHHHHhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhc
Confidence 3444566788999999999999998854 233344999999999999988 68999999999999999999998765 89
Q ss_pred CCCCcEEeccCcCCCCccch-hhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEeccc
Q 046723 275 LVNLKCLDLEYTGNLITIPR-QLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSH 353 (562)
Q Consensus 275 l~~L~~L~l~~~~~l~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 353 (562)
+++|++|++++| .+..+|. ..+..+++|++|++.+|..... .......+..+++|+.|+++.+...
T Consensus 87 l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~------------~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 87 LPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNK------------KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGS------------TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCc------------HhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999999998 6778886 2378999999999999987531 0011123778888998888876654
Q ss_pred c
Q 046723 354 G 354 (562)
Q Consensus 354 ~ 354 (562)
.
T Consensus 154 ~ 154 (176)
T 1a9n_A 154 E 154 (176)
T ss_dssp H
T ss_pred H
Confidence 4
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=9.9e-12 Score=110.62 Aligned_cols=127 Identities=23% Similarity=0.374 Sum_probs=104.0
Q ss_pred ceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcc-cCCcccCcEEeCCCCC
Q 046723 186 ARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVG-ISELVSLQHLDLSESD 264 (562)
Q Consensus 186 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 264 (562)
.+.+++.++.+..++. ...++|+.|++++|.++.+++..+..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 3567777777777763 2347899999999999888887788899999999999998888654 5889999999999999
Q ss_pred ccccchh-hhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCcc
Q 046723 265 IEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHK 314 (562)
Q Consensus 265 l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 314 (562)
++.+|.. ++.+++|++|++++| .+..+|...+..+++|++|++.+|...
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 9887765 578899999999988 677888776788899999999888654
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=7.9e-12 Score=110.22 Aligned_cols=130 Identities=24% Similarity=0.262 Sum_probs=111.3
Q ss_pred ccEEEeeccccc--cCCC-ccccccceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCC
Q 046723 164 ENFFVYAGVGLV--RAPD-VRGWEKARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHC 240 (562)
Q Consensus 164 ~~~~~~~~~~~~--~~~~-~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 240 (562)
-..+...+..+. ..+. +..+++++.|++.+|.+..+..+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 105 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC
Confidence 355566666555 4444 4788999999999999999888899999999999999999855666778999999999999
Q ss_pred CCcccC--cccCCcccCcEEeCCCCCccccch----hhhCCCCCcEEeccCcCCCCccch
Q 046723 241 ELTKLP--VGISELVSLQHLDLSESDIEELPG----ELKALVNLKCLDLEYTGNLITIPR 294 (562)
Q Consensus 241 ~~~~lp--~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~~~~l~~~p~ 294 (562)
.++.+| ..+..+++|++|++++|.++.+|. .+..+++|++|++++| ....+|.
T Consensus 106 ~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 106 KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 999886 789999999999999999998887 7899999999999998 5666664
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.32 E-value=2.8e-12 Score=110.69 Aligned_cols=129 Identities=19% Similarity=0.266 Sum_probs=102.4
Q ss_pred CCccccEEEccccCcc--ccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCccc-cchhhhCCCCCcE
Q 046723 204 TCPHLLTLFLNENNLR--KIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEE-LPGELKALVNLKC 280 (562)
Q Consensus 204 ~~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~ 280 (562)
..++|+.|++++|.++ .++. .+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 4578999999999998 5654 478899999999999999888 778999999999999999987 7877888999999
Q ss_pred EeccCcCCCCccch-hhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeE
Q 046723 281 LDLEYTGNLITIPR-QLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISL 347 (562)
Q Consensus 281 L~l~~~~~l~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 347 (562)
|++++| .+..+|. ..++.+++|++|++.+|..... .......+..+++|+.|++
T Consensus 93 L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~------------~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNL------------NDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGS------------TTHHHHHHHHCTTCCEETT
T ss_pred EECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccch------------HHHHHHHHHHCCCcccccC
Confidence 999998 5666652 3388899999999999976531 0001135667777777654
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=8.4e-12 Score=112.66 Aligned_cols=126 Identities=24% Similarity=0.366 Sum_probs=101.3
Q ss_pred eEEeccccccccCCCCCCCccccEEEccccCccccchh-hhcCCCCCcEEEecCCCCccc-CcccCCcccCcEEeCCCCC
Q 046723 187 RRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHND-FFQFMPSLKVLNLSHCELTKL-PVGISELVSLQHLDLSESD 264 (562)
Q Consensus 187 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~ 264 (562)
+.++++++.++.+|.. -..++++|++++|.++.+++. .+..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 5788888888887752 224889999999998888764 478899999999999988877 6788899999999999999
Q ss_pred ccccchh-hhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCcc
Q 046723 265 IEELPGE-LKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHK 314 (562)
Q Consensus 265 l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 314 (562)
++.++.. +..+++|++|++++| .+..+++..+..+++|++|++.+|...
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8877654 788899999999988 555554444788999999999888754
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=1.6e-11 Score=110.77 Aligned_cols=125 Identities=18% Similarity=0.264 Sum_probs=102.6
Q ss_pred eEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccC-cccCCcccCcEEeCCCCCc
Q 046723 187 RRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP-VGISELVSLQHLDLSESDI 265 (562)
Q Consensus 187 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~l 265 (562)
+.++..++.++.+|.. -.++|++|++++|.++.++. .+..+++|++|++++|.++.++ ..|.++++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 4677788888877642 23689999999999988874 4888999999999999988875 4588899999999999999
Q ss_pred cccch-hhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCcc
Q 046723 266 EELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHK 314 (562)
Q Consensus 266 ~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 314 (562)
+.++. .+..+++|++|++++| .+..+|...+..+++|+.|++.+|...
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 87765 5888999999999987 677888776888999999999888654
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=6e-12 Score=137.02 Aligned_cols=86 Identities=26% Similarity=0.358 Sum_probs=42.7
Q ss_pred hcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCE
Q 046723 226 FQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQV 305 (562)
Q Consensus 226 ~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~ 305 (562)
+..+++|++|+|++|.+..+|..+..+++|++|+|++|.++.+|..++++++|++|++++| .+..+|.. ++++++|++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~ 297 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE-LGSCFQLKY 297 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS-GGGGTTCSE
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChh-hcCCCCCCE
Confidence 4445555555555555555554454555555555555555555555555555555555554 33344444 444555555
Q ss_pred EEecCCCc
Q 046723 306 LRMFGASH 313 (562)
Q Consensus 306 L~l~~~~~ 313 (562)
|++++|.+
T Consensus 298 L~L~~N~l 305 (727)
T 4b8c_D 298 FYFFDNMV 305 (727)
T ss_dssp EECCSSCC
T ss_pred EECCCCCC
Confidence 55555443
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=3.7e-12 Score=134.37 Aligned_cols=104 Identities=24% Similarity=0.311 Sum_probs=76.8
Q ss_pred cccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCc
Q 046723 207 HLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYT 286 (562)
Q Consensus 207 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 286 (562)
.|++|++++|.++.+|. ++.+++|++|++++|.++.+|..++++++|++|++++|.++.+| .++.+++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 47777777777777664 67777777777777777777777777777777777777777777 6777777777777776
Q ss_pred CCCCcc--chhhhcCCCCCCEEEecCCCccc
Q 046723 287 GNLITI--PRQLISNLSRLQVLRMFGASHKA 315 (562)
Q Consensus 287 ~~l~~~--p~~~~~~l~~L~~L~l~~~~~~~ 315 (562)
.+..+ |.. ++++++|+.|++++|.+..
T Consensus 519 -~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 519 -RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp -CCCSSSTTGG-GGGCTTCCEEECTTSGGGG
T ss_pred -CCCCCCCcHH-HhcCCCCCEEEecCCcCCC
Confidence 55555 444 6777777777777776553
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=1.6e-11 Score=129.58 Aligned_cols=121 Identities=22% Similarity=0.258 Sum_probs=107.9
Q ss_pred cceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCC
Q 046723 185 KARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESD 264 (562)
Q Consensus 185 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~ 264 (562)
.++.|++++|.++.+|.+..+++|+.|++++|.++.+|.. ++.+++|++|++++|.++.+| .++++++|++|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 5889999999999999999999999999999999988775 899999999999999999998 89999999999999999
Q ss_pred cccc--chhhhCCCCCcEEeccCcCCCCccchh---hhcCCCCCCEEEe
Q 046723 265 IEEL--PGELKALVNLKCLDLEYTGNLITIPRQ---LISNLSRLQVLRM 308 (562)
Q Consensus 265 l~~l--p~~~~~l~~L~~L~l~~~~~l~~~p~~---~~~~l~~L~~L~l 308 (562)
++.+ |..++.+++|+.|++++| .+..+|+. .+..+++|+.|++
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 9988 899999999999999998 56665542 2445888888863
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=2.3e-11 Score=109.72 Aligned_cols=127 Identities=17% Similarity=0.271 Sum_probs=106.9
Q ss_pred ccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcc--cCCcccCcEEeCCCCCcccc-chhhhCCCCCcEEecc
Q 046723 208 LLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVG--ISELVSLQHLDLSESDIEEL-PGELKALVNLKCLDLE 284 (562)
Q Consensus 208 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~--~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~ 284 (562)
-++++++++.++.+|... ..+|++|++++|.++.++.. ++.+++|++|++++|.++.+ |..++.+++|++|+++
T Consensus 10 ~~~l~~s~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcCcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 378999999999998753 24899999999999988764 89999999999999999977 6789999999999999
Q ss_pred CcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEeccc
Q 046723 285 YTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSH 353 (562)
Q Consensus 285 ~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 353 (562)
+| .+..++...+.++++|++|++.+|.+.. ..+..+..+++|+.|+++++...
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 EN-KIKEISNKMFLGLHQLKTLNLYDNQISC---------------VMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SC-CCCEECSSSSTTCTTCCEEECCSSCCCE---------------ECTTSSTTCTTCCEEECTTCCBC
T ss_pred CC-cCCccCHHHhcCCCCCCEEECCCCcCCe---------------eCHHHhhcCCCCCEEEeCCCCcc
Confidence 98 6777776668899999999999998764 23556778888888888876654
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=4.5e-11 Score=107.81 Aligned_cols=127 Identities=20% Similarity=0.274 Sum_probs=107.2
Q ss_pred ccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCccccch-hhhCCCCCcEEeccCc
Q 046723 208 LLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELPG-ELKALVNLKCLDLEYT 286 (562)
Q Consensus 208 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~ 286 (562)
-++++++++.++.+|... .++|++|++++|.++.+|..+.++++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 12 ~~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 367899999999998752 368999999999999999999999999999999999998875 5899999999999998
Q ss_pred CCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEeccc
Q 046723 287 GNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSH 353 (562)
Q Consensus 287 ~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 353 (562)
.+..++...+.++++|++|++.+|.+..+ ....+..+++|+.|++.++...
T Consensus 89 -~l~~i~~~~f~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 -RLRCIPPRTFDGLKSLRLLSLHGNDISVV---------------PEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp -CCCBCCTTTTTTCTTCCEEECCSSCCCBC---------------CTTTTTTCTTCCEEECCSSCEE
T ss_pred -ccCEeCHHHhCCCCCCCEEECCCCCCCee---------------ChhhhhcCccccEEEeCCCCee
Confidence 67888876689999999999999987641 2234677888898888876643
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=2.1e-11 Score=132.70 Aligned_cols=111 Identities=28% Similarity=0.301 Sum_probs=89.3
Q ss_pred CCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEE
Q 046723 202 IPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELPGELKALVNLKCL 281 (562)
Q Consensus 202 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 281 (562)
+..++.|+.|+|++|.+..++.. +..+++|++|+|++|.++.+|..++++++|++|+|++|.++.+|..++.+++|++|
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred hccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 56778888888888888877766 44788888888888888888888888888888888888888888888888888888
Q ss_pred eccCcCCCCccchhhhcCCCCCCEEEecCCCccc
Q 046723 282 DLEYTGNLITIPRQLISNLSRLQVLRMFGASHKA 315 (562)
Q Consensus 282 ~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~ 315 (562)
++++| .+..+|.. ++++++|++|++.+|.+..
T Consensus 299 ~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 299 YFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp ECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCCS
T ss_pred ECCCC-CCCccChh-hhcCCCccEEeCCCCccCC
Confidence 88887 66788877 7888888888888887654
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.17 E-value=2e-10 Score=102.06 Aligned_cols=124 Identities=23% Similarity=0.365 Sum_probs=103.7
Q ss_pred EEeeccccccCCCccccccceEEeccccccccCCC--CCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcc
Q 046723 167 FVYAGVGLVRAPDVRGWEKARRLSLMQNQIRNLSE--IPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTK 244 (562)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 244 (562)
+...+..+...+. ....+++.|++.+|.+..++. +..+++|++|++++|.++.+++..+..+++|++|++++|.++.
T Consensus 12 l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 90 (177)
T 2o6r_A 12 IRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90 (177)
T ss_dssp EECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc
Confidence 4444555555543 234789999999999998764 6889999999999999999998878999999999999999998
Q ss_pred cCcc-cCCcccCcEEeCCCCCccccchh-hhCCCCCcEEeccCcCCCCc
Q 046723 245 LPVG-ISELVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTGNLIT 291 (562)
Q Consensus 245 lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~ 291 (562)
+|.. +..+++|++|++++|.++.+|.. +..+++|++|++++|.....
T Consensus 91 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 8765 68899999999999999998876 47899999999999854433
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.15 E-value=7.5e-13 Score=120.30 Aligned_cols=110 Identities=24% Similarity=0.278 Sum_probs=83.6
Q ss_pred CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCccccchhhhCCCCCcE
Q 046723 201 EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELPGELKALVNLKC 280 (562)
Q Consensus 201 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~ 280 (562)
.+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+|..+..+++|++|++++|.++.+| .++.+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCE
Confidence 3566778888888888887776 377788888888888888788777777788888888888887776 5777888888
Q ss_pred EeccCcCCCCccch-hhhcCCCCCCEEEecCCCcc
Q 046723 281 LDLEYTGNLITIPR-QLISNLSRLQVLRMFGASHK 314 (562)
Q Consensus 281 L~l~~~~~l~~~p~-~~~~~l~~L~~L~l~~~~~~ 314 (562)
|++++| .+..++. ..+..+++|++|++.+|...
T Consensus 120 L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 120 LYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred EECCCC-cCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 888877 5565554 33677888888888877654
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=5.5e-10 Score=98.78 Aligned_cols=101 Identities=25% Similarity=0.360 Sum_probs=51.2
Q ss_pred cEEEccccCccccchhhhcCCCCCcEEEecCCCCccc-CcccCCcccCcEEeCCCCCccccchh-hhCCCCCcEEeccCc
Q 046723 209 LTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKL-PVGISELVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYT 286 (562)
Q Consensus 209 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~ 286 (562)
+.++++++.++.+|... .++|++|++++|.++.+ |..+.++++|++|+|++|.++.+|.. +.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34445555555444431 14555555555555544 33445555555555555555555443 245555555555554
Q ss_pred CCCCccchhhhcCCCCCCEEEecCCCc
Q 046723 287 GNLITIPRQLISNLSRLQVLRMFGASH 313 (562)
Q Consensus 287 ~~l~~~p~~~~~~l~~L~~L~l~~~~~ 313 (562)
.+..+|...+..+++|++|++.+|.+
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred -ccceeCHHHhccccCCCEEEeCCCCc
Confidence 44445544445555555555555544
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.08 E-value=4e-10 Score=99.33 Aligned_cols=103 Identities=26% Similarity=0.366 Sum_probs=70.0
Q ss_pred ccEEEccccCccccchhhhcCCCCCcEEEecCCCCccc-CcccCCcccCcEEeCCCCCccccchh-hhCCCCCcEEeccC
Q 046723 208 LLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKL-PVGISELVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEY 285 (562)
Q Consensus 208 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~ 285 (562)
.+.++++++.++.+|... .++|++|++++|.++.+ |..+..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456667777776666542 36677777777777766 45567777777777777777766654 36777777777777
Q ss_pred cCCCCccchhhhcCCCCCCEEEecCCCcc
Q 046723 286 TGNLITIPRQLISNLSRLQVLRMFGASHK 314 (562)
Q Consensus 286 ~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 314 (562)
| .+..+|...+.++++|++|++.+|...
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 N-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred C-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6 566666655667777777777776543
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=4.1e-10 Score=99.58 Aligned_cols=106 Identities=21% Similarity=0.327 Sum_probs=89.9
Q ss_pred eEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcc-cCCcccCcEEeCCCCCc
Q 046723 187 RRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVG-ISELVSLQHLDLSESDI 265 (562)
Q Consensus 187 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~l 265 (562)
+.+++.++.+..+|.-- .++|++|++++|.++.+++..|..+++|++|++++|+++.+|.. +.++++|++|++++|.+
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 57888889888887522 38899999999999999887789999999999999999998776 57899999999999999
Q ss_pred cccchh-hhCCCCCcEEeccCcCCCCccch
Q 046723 266 EELPGE-LKALVNLKCLDLEYTGNLITIPR 294 (562)
Q Consensus 266 ~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~ 294 (562)
+.+|.. +..+++|++|++++| .+...+.
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N-~~~c~~~ 122 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNN-PWDCECR 122 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSS-CBCTTBG
T ss_pred ceeCHHHhccccCCCEEEeCCC-Ccccccc
Confidence 988876 888999999999998 4444443
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.06 E-value=4.9e-12 Score=114.86 Aligned_cols=119 Identities=21% Similarity=0.243 Sum_probs=95.2
Q ss_pred CccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhh
Q 046723 217 NLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQL 296 (562)
Q Consensus 217 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~ 296 (562)
.++.++. .+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++| .+..+|.
T Consensus 36 ~l~~l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~-- 110 (198)
T 1ds9_A 36 PIEKMDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSG-- 110 (198)
T ss_dssp TCCCCHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHHH--
T ss_pred cHhhhhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCCc--
Confidence 3445544 4788999999999999988888 888999999999999999999988888899999999988 6777773
Q ss_pred hcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeEEEecccc
Q 046723 297 ISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISLTLRNSHG 354 (562)
Q Consensus 297 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 354 (562)
+..+++|++|++.+|.+... ..+..+..+++|+.|+++++....
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~--------------~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNW--------------GEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHHHHSSEEEESEEECCCH--------------HHHHHHTTTTTCSEEEECSCHHHH
T ss_pred cccCCCCCEEECCCCcCCch--------------hHHHHHhcCCCCCEEEecCCcccc
Confidence 78889999999998876531 123467788888888888765543
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=7.8e-10 Score=97.44 Aligned_cols=101 Identities=21% Similarity=0.353 Sum_probs=89.2
Q ss_pred ceEEeccccccccCCCCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcc-cCCcccCcEEeCCCCC
Q 046723 186 ARRLSLMQNQIRNLSEIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVG-ISELVSLQHLDLSESD 264 (562)
Q Consensus 186 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 264 (562)
.+.++++++.++.+|.-. .++|++|++++|.++.+++..|..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 467889999998887532 48999999999999999888899999999999999999998765 5899999999999999
Q ss_pred ccccchh-hhCCCCCcEEeccCcC
Q 046723 265 IEELPGE-LKALVNLKCLDLEYTG 287 (562)
Q Consensus 265 l~~lp~~-~~~l~~L~~L~l~~~~ 287 (562)
++.+|.. +..+++|++|++++|.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 9988875 8899999999999984
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=3.6e-09 Score=104.07 Aligned_cols=284 Identities=12% Similarity=0.079 Sum_probs=140.9
Q ss_pred cccceEEecccccc-ccCCCCCC-CccccEEEccccCcc--ccchhhhcCCCCCcEEEecCCCCcccCcccCC-------
Q 046723 183 WEKARRLSLMQNQI-RNLSEIPT-CPHLLTLFLNENNLR--KIHNDFFQFMPSLKVLNLSHCELTKLPVGISE------- 251 (562)
Q Consensus 183 ~~~l~~L~l~~~~~-~~l~~~~~-~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~------- 251 (562)
+.+++.|.+.++-- .++..+.. +++|++|+|++|.+. ..... .++.++.+.+..+.+. +..|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~--~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP--AYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC--TTTTEEEETTEEE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC--HHHhccccccccc
Confidence 34566666665311 11222222 667777777777766 22221 2222344444444211 123344
Q ss_pred -cccCcEEeCCCCCccccch-hhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCc
Q 046723 252 -LVSLQHLDLSESDIEELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGG 329 (562)
Q Consensus 252 -l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 329 (562)
+.+|+.+.+.. .++.++. .+.++++|+.+++.++ .+..++...+..+.++..+......... ...
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~-----------~~~ 165 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYR-----------FKN 165 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHH-----------TST
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhh-----------ccc
Confidence 67777777766 6666654 3566677777777765 4455665556555555544443211000 000
Q ss_pred ccchhhhcCccccc-eeeEEEecccchHHHHhh-hhhhccccceeeccccCCCccchhhh-hhhcccCeeeeccccccce
Q 046723 330 ELIVEELLGLKHLE-VISLTLRNSHGLQSFLRS-WKLRRCTRALLLQCFNDSTLLEVSAL-AYLKQLNRLQIANSVILEE 406 (562)
Q Consensus 330 ~~~~~~l~~l~~L~-~L~l~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~ 406 (562)
......+.++..|+ .+.+ .....++..... .-...++..+.+.+. ........+ ..+++|+.+++.++ .+..
T Consensus 166 ~i~~~~f~~~~~L~~~i~~--~~~~~l~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n-~i~~ 240 (329)
T 3sb4_A 166 RWEHFAFIEGEPLETTIQV--GAMGKLEDEIMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKT-NATT 240 (329)
T ss_dssp TTTTSCEEESCCCEEEEEE--CTTCCHHHHHHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTB-CCCE
T ss_pred cccccccccccccceeEEe--cCCCcHHHHHhhcccCccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCC-Ccce
Confidence 00011122233333 1211 122222222111 111224555555442 122222222 23678888888765 5666
Q ss_pred eeccchhhhhhhhhccccEEEEecCCCCCCCc--cccccCCCc-eEEEecCcchhhhhcCCCCCCccccccCCCCccccc
Q 046723 407 LKMDYAEEVQQFAFRSLNMVEICNCIKLKDLT--FLVFAPNLK-SIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQ 483 (562)
Q Consensus 407 l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~-~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~ 483 (562)
++...... +.+|+.|++.+. ++.++ .+..+++|+ .+.+.+ .++.+.. .....+++|+
T Consensus 241 I~~~aF~~-----~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-----------~aF~~c~~L~ 300 (329)
T 3sb4_A 241 IPDFTFAQ-----KKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-----------GAFMGCDNLR 300 (329)
T ss_dssp ECTTTTTT-----CTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-----------TTTTTCTTEE
T ss_pred ecHhhhhC-----CCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-----------hhhhCCccCC
Confidence 66654432 678888888764 45443 366788888 888876 4555532 2345678888
Q ss_pred eeeccCCcCCcccCcCC-CCCCCcceee
Q 046723 484 NLEVAGARNLKSIYWKP-LPFPHLKAMS 510 (562)
Q Consensus 484 ~L~l~~c~~L~~~~~~~-~~~~~L~~L~ 510 (562)
.+++.+ .+++.++... ..+++|+.+.
T Consensus 301 ~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred EEEeCC-CccCccchhhhcCCcchhhhc
Confidence 888754 3566665432 2345565554
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=6.4e-09 Score=102.28 Aligned_cols=263 Identities=12% Similarity=0.080 Sum_probs=165.0
Q ss_pred cccceEEeccccccccCCC-CCCCccccEEEccccCccccchhhhcC--------CCCCcEEEecCCCCcccC-cccCCc
Q 046723 183 WEKARRLSLMQNQIRNLSE-IPTCPHLLTLFLNENNLRKIHNDFFQF--------MPSLKVLNLSHCELTKLP-VGISEL 252 (562)
Q Consensus 183 ~~~l~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~--------l~~L~~L~l~~~~~~~lp-~~~~~l 252 (562)
+.+++.|++++|.+..+.. ...++.++.+.+..+ .++...|.. +++|+.+++.+ +++.++ ..|.++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence 4689999999999883211 122333455555544 566677888 99999999999 888885 458889
Q ss_pred ccCcEEeCCCCCccccchh-hhCCCCCcEEeccCcC---CCCccchhhhcCCCCCC-EEEecCCCccchhcccccccccC
Q 046723 253 VSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTG---NLITIPRQLISNLSRLQ-VLRMFGASHKAIKEASENSILFG 327 (562)
Q Consensus 253 ~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~---~l~~~p~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~ 327 (562)
.+|+.+++.++.+..++.. +....++..+...... ....+....+.++.+|+ .+.+.......
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~------------ 191 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLE------------ 191 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHH------------
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHH------------
Confidence 9999999999988777653 5555566666554311 12223333244566665 44444322111
Q ss_pred CcccchhhhcCccccceeeEEEecccchHHHHhhhhhhccccceeeccccCCCccchhhhhhhcccCeeeecccccccee
Q 046723 328 GGELIVEELLGLKHLEVISLTLRNSHGLQSFLRSWKLRRCTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEEL 407 (562)
Q Consensus 328 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l 407 (562)
.......-...++..+.+.+.-.. .........+.+|+.+++.++. ++..+-..+..+.+|+.+.+.+. ++.+
T Consensus 192 --~~~~~~~~~~~~~~~l~~~~~l~~--~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I 264 (329)
T 3sb4_A 192 --DEIMKAGLQPRDINFLTIEGKLDN--ADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTI 264 (329)
T ss_dssp --HHHHHTTCCGGGCSEEEEEECCCH--HHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEE
T ss_pred --HHHhhcccCccccceEEEeeeecH--HHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--ccee
Confidence 111112223456666666553221 1111222234589999998754 55555556889999999999874 7777
Q ss_pred eccchhhhhhhhhcccc-EEEEecCCCCCCCc--cccccCCCceEEEecCcchhhhhcCCCCCCccccccCCCCccccce
Q 046723 408 KMDYAEEVQQFAFRSLN-MVEICNCIKLKDLT--FLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQN 484 (562)
Q Consensus 408 ~~~~~~~~~~~~~~~L~-~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~ 484 (562)
+...... +.+|+ .+.+.+ .++.++ .+..+++|+.|++.+ ..++.+.. .....+++|+.
T Consensus 265 ~~~aF~~-----~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~-----------~aF~~~~~L~~ 325 (329)
T 3sb4_A 265 GQRVFSN-----CGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGD-----------ELFGNGVPSKL 325 (329)
T ss_dssp CTTTTTT-----CTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECT-----------TTTCTTCCCCE
T ss_pred hHHHhhC-----ChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccch-----------hhhcCCcchhh
Confidence 7665442 78899 999987 455543 477899999999966 34555543 23456778887
Q ss_pred eec
Q 046723 485 LEV 487 (562)
Q Consensus 485 L~l 487 (562)
+..
T Consensus 326 ly~ 328 (329)
T 3sb4_A 326 IYK 328 (329)
T ss_dssp EEC
T ss_pred hcc
Confidence 753
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.75 E-value=2.1e-08 Score=99.41 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=52.3
Q ss_pred ecccc-ccccCCCCCCCccccEEEccc-cCccccchhhhcCCCCCcEEEecCCCCcccCc-ccCCcccCcEEeCCCCCcc
Q 046723 190 SLMQN-QIRNLSEIPTCPHLLTLFLNE-NNLRKIHNDFFQFMPSLKVLNLSHCELTKLPV-GISELVSLQHLDLSESDIE 266 (562)
Q Consensus 190 ~l~~~-~~~~l~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~ 266 (562)
+..++ .+..+|.+..+.+|+.|+|++ |.++.+++..|..+++|++|+|++|.++.+|. .|.++++|++|+|++|.++
T Consensus 14 ~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 14 RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp ECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred EcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 44444 455555455555566666653 55555555555556666666666665555432 3455556666666666555
Q ss_pred ccchhhhCCCCCcEEeccCc
Q 046723 267 ELPGELKALVNLKCLDLEYT 286 (562)
Q Consensus 267 ~lp~~~~~l~~L~~L~l~~~ 286 (562)
.+|..+.....|+.|++.+|
T Consensus 94 ~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 94 SLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CCCSTTTCSCCCCEEECCSS
T ss_pred eeCHHHcccCCceEEEeeCC
Confidence 55544333333555555554
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.71 E-value=4.1e-08 Score=97.22 Aligned_cols=102 Identities=21% Similarity=0.271 Sum_probs=87.3
Q ss_pred cEEEcccc-CccccchhhhcCCCCCcEEEecC-CCCcccC-cccCCcccCcEEeCCCCCccccch-hhhCCCCCcEEecc
Q 046723 209 LTLFLNEN-NLRKIHNDFFQFMPSLKVLNLSH-CELTKLP-VGISELVSLQHLDLSESDIEELPG-ELKALVNLKCLDLE 284 (562)
Q Consensus 209 ~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~-~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~ 284 (562)
..++.+++ .++.+|. +..+++|++|+|++ |.++.+| ..|+++.+|++|+|++|.++.+|+ .++++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35677877 8999887 88999999999996 8999887 568999999999999999997765 57999999999999
Q ss_pred CcCCCCccchhhhcCCCCCCEEEecCCCcc
Q 046723 285 YTGNLITIPRQLISNLSRLQVLRMFGASHK 314 (562)
Q Consensus 285 ~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 314 (562)
+| .+..+|...+..++ |+.|++.+|.+.
T Consensus 89 ~N-~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FN-ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SS-CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CC-ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 98 78888887566565 999999988765
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.71 E-value=7.3e-07 Score=89.71 Aligned_cols=103 Identities=20% Similarity=0.240 Sum_probs=69.1
Q ss_pred CCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccC-cccCCcccCcEEeCCCCCccccchhhhCCCCCcE
Q 046723 202 IPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLP-VGISELVSLQHLDLSESDIEELPGELKALVNLKC 280 (562)
Q Consensus 202 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~ 280 (562)
|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++.++ ..|.++.+|+.+++..++++.+|.......+|+.
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~ 207 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEE 207 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSE
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCE
Confidence 4443 5777777654 666666666664 577777765 455553 4567777777777777777777766555677777
Q ss_pred EeccCcCCCCccchhhhcCCCCCCEEEecC
Q 046723 281 LDLEYTGNLITIPRQLISNLSRLQVLRMFG 310 (562)
Q Consensus 281 L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~ 310 (562)
+.+.. .+..++...+.++++|+.+.+..
T Consensus 208 l~lp~--~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 208 VLLPV--TLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp EECCT--TCCEECTTTTTTCTTCCCEECCT
T ss_pred EEeCC--chheehhhHhhCCCCCCEEecCC
Confidence 77763 36667766677777777777754
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.68 E-value=5.8e-07 Score=90.44 Aligned_cols=144 Identities=15% Similarity=0.265 Sum_probs=108.8
Q ss_pred cceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCC
Q 046723 185 KARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSE 262 (562)
Q Consensus 185 ~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~ 262 (562)
+++.+.+..+ ++.+. .|.+ .+|+.+.+.. .++.+....|..+++|+.+++.+++++.+|.......+|+.+.+..
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~ 212 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV 212 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence 6777777655 55553 3555 4699999986 7778888889999999999999999999987766679999999985
Q ss_pred CCccccch-hhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccc
Q 046723 263 SDIEELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKH 341 (562)
Q Consensus 263 ~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 341 (562)
+ ++.++. .+.++++|+.+++.. .+..++...+.+ .+|+.+.+..+ ... -....+..+++
T Consensus 213 ~-l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~-i~~---------------I~~~aF~~c~~ 272 (401)
T 4fdw_A 213 T-LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNG-VTN---------------IASRAFYYCPE 272 (401)
T ss_dssp T-CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETT-CCE---------------ECTTTTTTCTT
T ss_pred c-hheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCC-ccE---------------EChhHhhCCCC
Confidence 5 776654 467889999999986 477888776777 78999999543 221 12445677888
Q ss_pred cceeeEEEec
Q 046723 342 LEVISLTLRN 351 (562)
Q Consensus 342 L~~L~l~~~~ 351 (562)
|+.+.+..+.
T Consensus 273 L~~l~l~~~~ 282 (401)
T 4fdw_A 273 LAEVTTYGST 282 (401)
T ss_dssp CCEEEEESSC
T ss_pred CCEEEeCCcc
Confidence 8888776543
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.59 E-value=1.2e-08 Score=101.72 Aligned_cols=129 Identities=17% Similarity=0.114 Sum_probs=59.1
Q ss_pred ccceEEeccccccccCC--C----C-CCCccccEEEccccCccccch-hhhcCCCCCcEEEecCCCCccc-----Cccc-
Q 046723 184 EKARRLSLMQNQIRNLS--E----I-PTCPHLLTLFLNENNLRKIHN-DFFQFMPSLKVLNLSHCELTKL-----PVGI- 249 (562)
Q Consensus 184 ~~l~~L~l~~~~~~~l~--~----~-~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~l-----p~~~- 249 (562)
+.++.|++++|.+.... . + ...++|+.|++++|.++.... .....+++|++|++++|.++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 35566666666554321 1 1 122456666666665543211 1122344556666666655421 1111
Q ss_pred CCcccCcEEeCCCCCccc-----cchhhhCCCCCcEEeccCcCCCCccc----hhhhcCCCCCCEEEecCCCc
Q 046723 250 SELVSLQHLDLSESDIEE-----LPGELKALVNLKCLDLEYTGNLITIP----RQLISNLSRLQVLRMFGASH 313 (562)
Q Consensus 250 ~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l~~~p----~~~~~~l~~L~~L~l~~~~~ 313 (562)
...++|++|++++|.++. ++..+...++|++|++++|. +.... ...+...++|++|++++|.+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 223455666666655542 33334455555555555552 32211 11133445555555555544
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.57 E-value=1.3e-08 Score=101.54 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=15.9
Q ss_pred CCCcEEEecCCCCcc--cCcccCCcccCcEEeCCCCCcc
Q 046723 230 PSLKVLNLSHCELTK--LPVGISELVSLQHLDLSESDIE 266 (562)
Q Consensus 230 ~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~l~ 266 (562)
++|++|++++|.++. +..-...+.+|++|++++|.+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 455555555554431 1111122344555555555443
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.43 E-value=1.2e-07 Score=82.43 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=54.6
Q ss_pred cccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCC--CccccccC
Q 046723 367 CTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKD--LTFLVFAP 444 (562)
Q Consensus 367 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~l~ 444 (562)
.|++|++++|. +++..+..+..+++|++|++.+|..+++......... ....++|++|+|++|+++++ +..+..++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~-~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL-ENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC-HHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc-ccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 56667777665 5555555566677777777777766654332222100 00134677777777776666 44556677
Q ss_pred CCceEEEecCcchhh
Q 046723 445 NLKSIKVGICHAMEE 459 (562)
Q Consensus 445 ~L~~L~L~~c~~l~~ 459 (562)
+|++|+|++|+.+++
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 777777777766554
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.25 E-value=3.2e-06 Score=83.49 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=17.9
Q ss_pred hcCCCCCcEEEecCCCCcccCcccCCcccCcEEeCCCCCc
Q 046723 226 FQFMPSLKVLNLSHCELTKLPVGISELVSLQHLDLSESDI 265 (562)
Q Consensus 226 ~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~l 265 (562)
+..+++|+.|+++++.-..++. +. +++|++|.+..|.+
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l 205 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGL 205 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBC
T ss_pred HhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCC
Confidence 4455566666665552112322 22 45555555555443
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.24 E-value=1.2e-05 Score=80.90 Aligned_cols=125 Identities=14% Similarity=0.227 Sum_probs=58.6
Q ss_pred ccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCccc-CcccCCcccCc
Q 046723 180 VRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKL-PVGISELVSLQ 256 (562)
Q Consensus 180 ~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~ 256 (562)
|.+..+++.+.+.. .++.+. +|.+|.+|+.+.+..+ ++.+....|..+.+|+.+.+..+ +..+ ...+.+...+.
T Consensus 67 F~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred hhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence 44455566666543 244432 3555666666666433 44455555555555555444322 1111 11122221111
Q ss_pred EEeCCCCCcccc-chhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCC
Q 046723 257 HLDLSESDIEEL-PGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGA 311 (562)
Q Consensus 257 ~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~ 311 (562)
.. .... +..+ ...+.++.+|+.+.+.. .+..++...+.++.+|+.+.+..+
T Consensus 144 ~~-~~~~-~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 144 IT-IPEG-VTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp EE-CCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT
T ss_pred cc-cCcc-ccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC
Confidence 11 1111 1111 12345666777777764 345566555666777777766543
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=5.5e-06 Score=71.89 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=18.6
Q ss_pred cccceeeccccCCCccchhhhhhhcccCeeeeccccccc
Q 046723 367 CTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILE 405 (562)
Q Consensus 367 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~ 405 (562)
+|++|++++|..+++..+..+..+++|++|++++|+.++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 455555555555444444444444444444444444433
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.88 E-value=1.5e-05 Score=78.67 Aligned_cols=138 Identities=21% Similarity=0.269 Sum_probs=75.7
Q ss_pred CCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcc-cCccc--CCcccCcEEeCCCC--------Cccccchh
Q 046723 203 PTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTK-LPVGI--SELVSLQHLDLSES--------DIEELPGE 271 (562)
Q Consensus 203 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~--~~l~~L~~L~l~~~--------~l~~lp~~ 271 (562)
..+++|+.|.++++.-..+++ +. +++|+.|++..+.+.. ....+ ..+++|++|+|+.+ .+..+...
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 455777777777653122322 32 6777777777665541 11222 25677777776421 12222222
Q ss_pred h--hCCCCCcEEeccCcCCCCccchhhh--cCCCCCCEEEecCCCccchhcccccccccCCcccchhhhcCccccceeeE
Q 046723 272 L--KALVNLKCLDLEYTGNLITIPRQLI--SNLSRLQVLRMFGASHKAIKEASENSILFGGGELIVEELLGLKHLEVISL 347 (562)
Q Consensus 272 ~--~~l~~L~~L~l~~~~~l~~~p~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 347 (562)
+ ..+++|++|++.+|......+..+. ..+++|++|+++.|.+... +...+...+.++++|+.|++
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~-----------G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE-----------GARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH-----------HHHHHHTTHHHHTTCSEEEC
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH-----------HHHHHHhhcccCCcceEEEC
Confidence 2 2467788888877643222222211 2467788888877765431 01235566667777888888
Q ss_pred EEecccc
Q 046723 348 TLRNSHG 354 (562)
Q Consensus 348 ~~~~~~~ 354 (562)
+.+.++.
T Consensus 315 ~~n~i~d 321 (362)
T 2ra8_A 315 KYNYLSD 321 (362)
T ss_dssp CSBBCCH
T ss_pred CCCcCCH
Confidence 7766544
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.85 E-value=5.2e-06 Score=77.74 Aligned_cols=82 Identities=24% Similarity=0.259 Sum_probs=58.4
Q ss_pred cCCCCCcEEEecCCCCccc---CcccCCcccCcEEeCCCCCccccchhhhCCC--CCcEEeccCcCCCCccc------hh
Q 046723 227 QFMPSLKVLNLSHCELTKL---PVGISELVSLQHLDLSESDIEELPGELKALV--NLKCLDLEYTGNLITIP------RQ 295 (562)
Q Consensus 227 ~~l~~L~~L~l~~~~~~~l---p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~--~L~~L~l~~~~~l~~~p------~~ 295 (562)
..+++|+.|+|++|.++.+ |..+..+++|++|+|++|.++.+. .+..+. +|++|++.+|.....+| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 5678888888888887765 345567888888888888888663 344444 88888888886444444 23
Q ss_pred hhcCCCCCCEEEec
Q 046723 296 LISNLSRLQVLRMF 309 (562)
Q Consensus 296 ~~~~l~~L~~L~l~ 309 (562)
++..+++|+.|+-.
T Consensus 246 il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 246 IRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHCTTCCEESSC
T ss_pred HHHHCcccCeECCc
Confidence 46678888877654
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.85 E-value=0.00014 Score=72.98 Aligned_cols=127 Identities=16% Similarity=0.169 Sum_probs=80.7
Q ss_pred CCccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCccc-CcccCCccc
Q 046723 178 PDVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKL-PVGISELVS 254 (562)
Q Consensus 178 ~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~ 254 (562)
..|.++.+|+.+.+..+ ++.+. .+..+..|+.+.+..+ +..+....|..+..+........ ..+ ...|.++.+
T Consensus 88 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~ 163 (394)
T 4fs7_A 88 FAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGV--TVIGDEAFATCES 163 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTC--CEECTTTTTTCTT
T ss_pred hHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCccc--cccchhhhcccCC
Confidence 34677788999988654 44443 4677888888766533 44555555666655444333222 222 345777888
Q ss_pred CcEEeCCCCCccccch-hhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCC
Q 046723 255 LQHLDLSESDIEELPG-ELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGA 311 (562)
Q Consensus 255 L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~ 311 (562)
|+.+.+.++ +..++. .+.++.+|+.+.+..+ +..++...+.++..|+.+.+..+
T Consensus 164 L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 164 LEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT
T ss_pred CcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC
Confidence 888888765 333433 4566788888888753 66677666777888887776544
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.84 E-value=0.00046 Score=69.21 Aligned_cols=102 Identities=13% Similarity=0.189 Sum_probs=46.0
Q ss_pred hhhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCCc--cccccCCCceEEEecCcchhhhhcCC
Q 046723 387 LAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLT--FLVFAPNLKSIKVGICHAMEEIASEG 464 (562)
Q Consensus 387 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~ 464 (562)
+..+..|+.+.+.. .+..+...... .+.+|+.+.+.. .++.++ .+..+.+|+.+.|.. .++.+..
T Consensus 261 F~~c~~L~~i~lp~--~~~~I~~~aF~-----~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~-- 327 (394)
T 4gt6_A 261 FDSCAYLASVKMPD--SVVSIGTGAFM-----NCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILD-- 327 (394)
T ss_dssp TTTCSSCCEEECCT--TCCEECTTTTT-----TCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECT--
T ss_pred eeecccccEEeccc--ccceecCcccc-----cccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehH--
Confidence 44555666665543 22233222221 145666666542 233322 244566677766643 2333321
Q ss_pred CCCCccccccCCCCccccceeeccCCcCCcccCcC-CCCCCCcceeeec
Q 046723 465 KFAEVPEVMANLNPFEKLQNLEVAGARNLKSIYWK-PLPFPHLKAMSFL 512 (562)
Q Consensus 465 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~-~~~~~~L~~L~i~ 512 (562)
.....+.+|+.+.|-+ +++.+... ...+++|+.+.+.
T Consensus 328 ---------~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 328 ---------DAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp ---------TTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEES
T ss_pred ---------hHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEEC
Confidence 1233455666666642 34444322 1234555555543
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.78 E-value=1.1e-05 Score=71.76 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=16.2
Q ss_pred cCCcccCcEEeCCCCCcc-----ccchhhhCCCCCcEEeccCc
Q 046723 249 ISELVSLQHLDLSESDIE-----ELPGELKALVNLKCLDLEYT 286 (562)
Q Consensus 249 ~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~ 286 (562)
+...++|++|+|++|.+. .+...+...++|++|++++|
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 333444444444444443 12223333344555555544
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.76 E-value=2.2e-05 Score=69.70 Aligned_cols=112 Identities=14% Similarity=0.090 Sum_probs=76.0
Q ss_pred CCCCccccEEEcccc-Cccccc----hhhhcCCCCCcEEEecCCCCcc-----cCcccCCcccCcEEeCCCCCccc----
Q 046723 202 IPTCPHLLTLFLNEN-NLRKIH----NDFFQFMPSLKVLNLSHCELTK-----LPVGISELVSLQHLDLSESDIEE---- 267 (562)
Q Consensus 202 ~~~~~~L~~L~l~~~-~l~~~~----~~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~l~~---- 267 (562)
+...+.|++|++++| .+.... ...+...++|++|+|++|.+.. +...+...++|++|+|++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 356678888888887 775421 2235667889999999888762 34455566789999999988763
Q ss_pred -cchhhhCCCCCcEEec--cCcCCCCccc----hhhhcCCCCCCEEEecCCCcc
Q 046723 268 -LPGELKALVNLKCLDL--EYTGNLITIP----RQLISNLSRLQVLRMFGASHK 314 (562)
Q Consensus 268 -lp~~~~~l~~L~~L~l--~~~~~l~~~p----~~~~~~l~~L~~L~l~~~~~~ 314 (562)
+...+...++|++|++ ++| .+..-. ...+...++|++|++.+|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4556777788888888 666 333311 122455677888888877654
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.68 E-value=0.0014 Score=65.67 Aligned_cols=100 Identities=14% Similarity=0.203 Sum_probs=56.7
Q ss_pred cccceeeccccCCCccchhhhhhhcccCeeeeccccccceeeccchhhhhhhhhccccEEEEecCCCCCCCc--cccccC
Q 046723 367 CTRALLLQCFNDSTLLEVSALAYLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIKLKDLT--FLVFAP 444 (562)
Q Consensus 367 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~ 444 (562)
+|+.+.+.+ ......-..+..++.|+.+.+.. .+..++...... +.+|+.+.|-.. ++.+. .+..+.
T Consensus 266 ~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~-----c~~L~~i~lp~~--v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 266 YLASVKMPD--SVVSIGTGAFMNCPALQDIEFSS--RITELPESVFAG-----CISLKSIDIPEG--ITQILDDAFAGCE 334 (394)
T ss_dssp SCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-----CTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred cccEEeccc--ccceecCcccccccccccccCCC--cccccCceeecC-----CCCcCEEEeCCc--ccEehHhHhhCCC
Confidence 555555532 12222223466677888887753 455555544332 677888887542 33332 356778
Q ss_pred CCceEEEecCcchhhhhcCCCCCCccccccCCCCccccceeeccCC
Q 046723 445 NLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGA 490 (562)
Q Consensus 445 ~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 490 (562)
+|+.+.|-. .++.+.. .....+++|+.+++.+.
T Consensus 335 ~L~~i~ip~--sv~~I~~-----------~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 335 QLERIAIPS--SVTKIPE-----------SAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TCCEEEECT--TCCBCCG-----------GGGTTCTTCCEEEESSC
T ss_pred CCCEEEECc--ccCEEhH-----------hHhhCCCCCCEEEECCc
Confidence 888888843 2444322 13445778888888763
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.67 E-value=0.0029 Score=62.88 Aligned_cols=127 Identities=10% Similarity=0.146 Sum_probs=68.9
Q ss_pred CCccccccceEEeccccccccCC--CCCCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCcccCcccCCcccC
Q 046723 178 PDVRGWEKARRLSLMQNQIRNLS--EIPTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKLPVGISELVSL 255 (562)
Q Consensus 178 ~~~~~~~~l~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L 255 (562)
+.+....+++.+.+.. .++.+. +|.+|.+|+.+.+..+ ++.+...+|..+ +|..+.+.. +++.++.......+|
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L 115 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDL 115 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCC
T ss_pred cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCc
Confidence 4444455666666653 344442 4667777777777543 666666667666 455555543 344454433333467
Q ss_pred cEEeCCCCCccccchhhhCCCCCcEEeccCcCCCCccchhhhcCCCCCCEEEecCC
Q 046723 256 QHLDLSESDIEELPGELKALVNLKCLDLEYTGNLITIPRQLISNLSRLQVLRMFGA 311 (562)
Q Consensus 256 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~ 311 (562)
+.+.+..+ +..+......-.+|+...+.. .+..+....+..+.+++...+...
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTT
T ss_pred ccccCCCc-cccccccccccceeeeeeccc--eeeccccchhcccccccccccccc
Confidence 77777654 333333222233555555543 344454444566777777666543
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.65 E-value=6.4e-05 Score=70.30 Aligned_cols=81 Identities=28% Similarity=0.362 Sum_probs=65.0
Q ss_pred CCCccccEEEccccCccccch--hhhcCCCCCcEEEecCCCCcccCcccCCcc--cCcEEeCCCCCcc-ccc-------h
Q 046723 203 PTCPHLLTLFLNENNLRKIHN--DFFQFMPSLKVLNLSHCELTKLPVGISELV--SLQHLDLSESDIE-ELP-------G 270 (562)
Q Consensus 203 ~~~~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~--~L~~L~l~~~~l~-~lp-------~ 270 (562)
.++++|++|+|++|.++.++. ..+..+++|++|+|++|.++.+ ..+..+. +|++|++.+|.+. .+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 467899999999999998653 4467899999999999999876 3355555 9999999999887 344 2
Q ss_pred hhhCCCCCcEEecc
Q 046723 271 ELKALVNLKCLDLE 284 (562)
Q Consensus 271 ~~~~l~~L~~L~l~ 284 (562)
.+..+++|+.||-.
T Consensus 246 il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 246 IRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHCTTCCEESSC
T ss_pred HHHHCcccCeECCc
Confidence 46789999999843
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.11 E-value=0.053 Score=53.58 Aligned_cols=103 Identities=12% Similarity=0.205 Sum_probs=50.1
Q ss_pred CCCccccEEEccccCccccchhhhcCCCCCcEEEecCCCCccc-CcccCCcccCcEEeCCCCCccccch-hhhCCCCCcE
Q 046723 203 PTCPHLLTLFLNENNLRKIHNDFFQFMPSLKVLNLSHCELTKL-PVGISELVSLQHLDLSESDIEELPG-ELKALVNLKC 280 (562)
Q Consensus 203 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~ 280 (562)
..+.+|+.+.+..+ +..+....+..+..|+.+.+..+ ++.+ ...+.++.+|+.+.+..+ +..++. .+..+.+|+.
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 34455555555422 33344444555566666655443 3333 223444555555555432 333332 2444555665
Q ss_pred EeccCcCCCCccchhhhcCCCCCCEEEec
Q 046723 281 LDLEYTGNLITIPRQLISNLSRLQVLRMF 309 (562)
Q Consensus 281 L~l~~~~~l~~~p~~~~~~l~~L~~L~l~ 309 (562)
+.+.++ .+..++...+.++.+|+.+.+.
T Consensus 291 i~l~~~-~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 291 VVMDNS-AIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCEEECC
T ss_pred cccccc-ccceehhhhhcCCCCCCEEEcC
Confidence 555543 3445555445555666655554
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.36 E-value=0.057 Score=44.15 Aligned_cols=51 Identities=27% Similarity=0.406 Sum_probs=23.6
Q ss_pred EEEecCCCCc--ccCcccCCcccCcEEeCCCCCccccchh-hhCCCCCcEEeccCc
Q 046723 234 VLNLSHCELT--KLPVGISELVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYT 286 (562)
Q Consensus 234 ~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~ 286 (562)
+++-++.+++ .+|..+. .+|++|+|++|.++.+|.. +..+++|+.|+|.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4444555554 5554332 2455555555555544433 233444444444443
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.09 E-value=0.08 Score=43.25 Aligned_cols=53 Identities=23% Similarity=0.274 Sum_probs=26.6
Q ss_pred EEEccccCcc--ccchhhhcCCCCCcEEEecCCCCcccCcc-cCCcccCcEEeCCCCCc
Q 046723 210 TLFLNENNLR--KIHNDFFQFMPSLKVLNLSHCELTKLPVG-ISELVSLQHLDLSESDI 265 (562)
Q Consensus 210 ~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~l 265 (562)
+++.+++.++ .+|.. --++|++|+|++|+++.+|.. |..+.+|++|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~---lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA---FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSC---CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCC---CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 3444455554 44432 123455666666666555433 34455566666665533
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.27 E-value=0.12 Score=45.41 Aligned_cols=60 Identities=12% Similarity=0.055 Sum_probs=26.9
Q ss_pred hcCCCCCcEEEecCCCCc-----ccCcccCCcccCcEEeCCCCCcc-----ccchhhhCCCCCcEEeccC
Q 046723 226 FQFMPSLKVLNLSHCELT-----KLPVGISELVSLQHLDLSESDIE-----ELPGELKALVNLKCLDLEY 285 (562)
Q Consensus 226 ~~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~ 285 (562)
+..-..|+.|+|++|.+. .+-..+..-+.|++|+|++|.|. .+-..+..-+.|++|++++
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 344455555555555544 12222223344555555555444 1222333334455555543
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.79 E-value=0.13 Score=45.28 Aligned_cols=103 Identities=13% Similarity=0.198 Sum_probs=71.6
Q ss_pred ccceEEecccc-cccc------CCCCCCCccccEEEccccCccccc----hhhhcCCCCCcEEEecCCCCc-----ccCc
Q 046723 184 EKARRLSLMQN-QIRN------LSEIPTCPHLLTLFLNENNLRKIH----NDFFQFMPSLKVLNLSHCELT-----KLPV 247 (562)
Q Consensus 184 ~~l~~L~l~~~-~~~~------l~~~~~~~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~-----~lp~ 247 (562)
..++.|++.++ .+.. ...+..-..|+.|+|++|.+.+.. .+.+..-+.|+.|+|++|.|. .+-.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 57888999875 6543 133456688999999999987432 334567789999999999887 3445
Q ss_pred ccCCcccCcEEeCCCCCc---c-----ccchhhhCCCCCcEEeccCc
Q 046723 248 GISELVSLQHLDLSESDI---E-----ELPGELKALVNLKCLDLEYT 286 (562)
Q Consensus 248 ~~~~l~~L~~L~l~~~~l---~-----~lp~~~~~l~~L~~L~l~~~ 286 (562)
.+..-+.|++|+|+++.. . .+-..+..-+.|+.|++..+
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 566667799999987533 2 23334455567777777654
No 169
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=71.06 E-value=11 Score=35.72 Aligned_cols=119 Identities=13% Similarity=0.077 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHhcCCCChhHHHH-HHHHHhccCCCCCCCccchh-hhhhhhccCCCchhhhhhhhhhc
Q 046723 9 QLAQTAARECGGLPLALITIGRAMACKKTPEEWSY-AIEVLRTSSSQFPGLGNEVY-PLLKFSYDSLPSDTIRSCHLYCS 86 (562)
Q Consensus 9 ~i~~~i~~~c~GlPLai~~ig~~L~~~~~~~~W~~-~l~~l~~~~~~~~~~~~~i~-~~L~~sy~~L~~~~~k~cfl~~a 86 (562)
+...+|+..++|.|+++..++..+....+...+.. +.+.... .+. .+-.+.++ ++ ..+..+..+|
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~l~~~--~~-~~~~~l~~la 292 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKG----------LIMGELEELRRR--SP-RYVDILRAIA 292 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----------HHHHHHHHHHHH--CH-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHH----------HHHHHHHHHHhC--Ch-hHHHHHHHHH
Confidence 46788999999999999999876542122222211 1111100 011 11112222 55 3788888888
Q ss_pred ccCCCccccHHHHHHHHHHCCCcccCCCchhhHhhHHHHHHHHHhccccccCCCcEEE-chhHHHH
Q 046723 87 LYPEDYCISKEKLIDCWIGERLLTERDRTGEQKEGYHILGILLHACLLEEGGGGEVKM-HDVIRDM 151 (562)
Q Consensus 87 ~fp~~~~~~~~~Li~~wiaeg~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~m-hdl~~~l 151 (562)
+ + ..+...+.....+.. .+. .......+++.|.+.+++...+ +.+.+ |.+++..
T Consensus 293 ~---g-~~~~~~l~~~~~~~~-----~~~-~~~~~~~~l~~L~~~gli~~~~-~~y~~~~p~~~~~ 347 (350)
T 2qen_A 293 L---G-YNRWSLIRDYLAVKG-----TKI-PEPRLYALLENLKKMNWIVEED-NTYKIADPVVATV 347 (350)
T ss_dssp T---T-CCSHHHHHHHHHHTT-----CCC-CHHHHHHHHHHHHHTTSEEEET-TEEEESSHHHHHH
T ss_pred h---C-CCCHHHHHHHHHHHh-----CCC-CHHHHHHHHHHHHhCCCEEecC-CEEEEecHHHHHH
Confidence 7 2 234455544432211 011 1344667899999999998753 45665 4565543
No 170
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=61.90 E-value=23 Score=33.61 Aligned_cols=117 Identities=14% Similarity=0.018 Sum_probs=65.7
Q ss_pred HHHHHHcCCchhHHHHHHHHhcCCCChhHHHHH-HHHHhccCCCCCCCccchhhhh-hhhcc--CCCchhhhhhhhhhcc
Q 046723 12 QTAARECGGLPLALITIGRAMACKKTPEEWSYA-IEVLRTSSSQFPGLGNEVYPLL-KFSYD--SLPSDTIRSCHLYCSL 87 (562)
Q Consensus 12 ~~i~~~c~GlPLai~~ig~~L~~~~~~~~W~~~-l~~l~~~~~~~~~~~~~i~~~L-~~sy~--~L~~~~~k~cfl~~a~ 87 (562)
.+|+..++|.|+++..++..+....+...|-.. .+.... .+...+ .+.|+ .|++. .+..+..+|+
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~l~~~-~~~~l~~la~ 301 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK----------LILKEFENFLHGREIARKR-YLNIMRTLSK 301 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----------HHHHHHHHHHTTCGGGHHH-HHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH----------HHHHHHHHHhhccccccHH-HHHHHHHHHc
Confidence 789999999999999999876532333333221 111000 111111 12221 57774 8888888887
Q ss_pred cCCCccccHHHHHHHHH-HCCCcccCCCchhhHhhHHHHHHHHHhccccccCCCcEEE-chhHHHH
Q 046723 88 YPEDYCISKEKLIDCWI-GERLLTERDRTGEQKEGYHILGILLHACLLEEGGGGEVKM-HDVIRDM 151 (562)
Q Consensus 88 fp~~~~~~~~~Li~~wi-aeg~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~m-hdl~~~l 151 (562)
+. +...+....- ..|. .........+++.|.+.+++...+ +.+.+ |.++++.
T Consensus 302 ---g~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~ 355 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLA 355 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHH
T ss_pred ---CC--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHh
Confidence 22 4444433210 1121 011234567899999999998754 45665 5666653
No 171
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=57.18 E-value=8.5 Score=36.34 Aligned_cols=35 Identities=26% Similarity=0.190 Sum_probs=22.3
Q ss_pred HHHHCCCccc-CCCchhhHhhHHHHH-HHHHhccccc
Q 046723 102 CWIGERLLTE-RDRTGEQKEGYHILG-ILLHACLLEE 136 (562)
Q Consensus 102 ~wiaeg~~~~-~~~~~~~~~~~~~~~-~L~~~~l~~~ 136 (562)
+-+..|++.. ..+....+.|..|++ ++++++++|+
T Consensus 288 ~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 288 YLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 3567888865 566778888999887 8888888764
No 172
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=39.40 E-value=70 Score=30.98 Aligned_cols=111 Identities=10% Similarity=-0.045 Sum_probs=61.7
Q ss_pred HHHHHHHHHcC------CchhHHHHHHHHh---c---CC--CChhHHHHHHHHHhccCCCCCCCccchhhhhhhhccCCC
Q 046723 9 QLAQTAARECG------GLPLALITIGRAM---A---CK--KTPEEWSYAIEVLRTSSSQFPGLGNEVYPLLKFSYDSLP 74 (562)
Q Consensus 9 ~i~~~i~~~c~------GlPLai~~ig~~L---~---~~--~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~sy~~L~ 74 (562)
+..+.|+++|+ |.|..+..+.... + +. .+.+.+..++..... ...+.-+++.||
T Consensus 240 ~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~ 307 (412)
T 1w5s_A 240 RHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALS 307 (412)
T ss_dssp HHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSC
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCC
Confidence 46778889999 9997665554321 1 11 233444444332110 233455778899
Q ss_pred chhhhhhhhhhcccC--CCccccHHHHHHHHH--H---CCCcccCCCchhhHhhHHHHHHHHHhcccccc
Q 046723 75 SDTIRSCHLYCSLYP--EDYCISKEKLIDCWI--G---ERLLTERDRTGEQKEGYHILGILLHACLLEEG 137 (562)
Q Consensus 75 ~~~~k~cfl~~a~fp--~~~~~~~~~Li~~wi--a---eg~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 137 (562)
.+ .+.++..+|.+. .+..+...++...+. + .|. .. ........+++.|.+.+++...
T Consensus 308 ~~-~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 308 IH-ELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KP----RGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CC----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CC----CCHHHHHHHHHHHHhCCCEEee
Confidence 85 888888888754 223455555544442 2 111 00 1123456789999999998764
No 173
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.34 E-value=60 Score=24.42 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=18.6
Q ss_pred ccccchhhhcCCCCCcEEEecCCCCccc-CcccCCcccCcEEeCC
Q 046723 218 LRKIHNDFFQFMPSLKVLNLSHCELTKL-PVGISELVSLQHLDLS 261 (562)
Q Consensus 218 l~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~ 261 (562)
++.+....|.++.+|+.+.+..+ ++.+ ...|.++.+|+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34444444555555555554443 2222 2234444444444443
No 174
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=23.07 E-value=42 Score=17.72 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=14.7
Q ss_pred HcCCchhHHHHHHHHhcC
Q 046723 17 ECGGLPLALITIGRAMAC 34 (562)
Q Consensus 17 ~c~GlPLai~~ig~~L~~ 34 (562)
|-.-+|||..+.++.++.
T Consensus 7 krrklplavav~agv~~a 24 (28)
T 2vda_B 7 KRRKLPLAVAVAAGVMSA 24 (28)
T ss_dssp CCCCCTHHHHHHHHTTCC
T ss_pred ccccCchHHHHHHHHhHh
Confidence 445799999999998875
Done!