BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046724
         (197 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA
           PE=1 SV=1
          Length = 667

 Score = 32.0 bits (71), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 53  FLRSKFMVSRALSTDAAASASIGEVHRAAAGPLVEYERRIIAGELLDGDVCQLGTLGELQ 112
           F+RS F     +  D+  S  +G V      P  E  +++ A +  + DV    TL + +
Sbjct: 538 FVRSPFASQVFVYGDSLNSFLVGVVV-----PDFEVVQKLFASKYPELDVSNHATLAKSK 592

Query: 113 RLYDELVESADAC 125
            LY E++ S DAC
Sbjct: 593 ELYKEILSSFDAC 605


>sp|Q14264|ENR1_HUMAN HERV-R_7q21.2 provirus ancestral Env polyprotein OS=Homo sapiens
           GN=ERV3-1 PE=1 SV=2
          Length = 604

 Score = 31.6 bits (70), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 25/86 (29%)

Query: 101 DVCQLGTLGELQRLYDELVESADACKLDRYSSSEKSGDSPVSLQESVAVVTFTATIFILT 160
           DVCQ+ ++G L  +    +E   +C  +RY+    S DSPV+                 T
Sbjct: 122 DVCQIVSMGSLFPVIFSSMEYYSSCHKNRYAHPACSTDSPVT-----------------T 164

Query: 161 CQRIVPLWGSRDWENNVD--GPIFLS 184
           C      W    W  N    GPI L+
Sbjct: 165 C------WDCTTWSTNQQSLGPIMLT 184


>sp|P52303|AP1B1_RAT AP-1 complex subunit beta-1 OS=Rattus norvegicus GN=Ap1b1 PE=1 SV=1
          Length = 949

 Score = 31.6 bits (70), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 26  FTTRPKDLTENYHNCAYGVTNNAEIESFLRSKFMVSRALSTDAAASASIGEVHRAAAGPL 85
           F  +P +  E         T +++        ++  R LSTD  A+  +      A  PL
Sbjct: 492 FLKKPTETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVAAKEV----VLAEKPL 547

Query: 86  VEYERRIIAGELLDGDVCQLGTLG 109
           +  E  +I   LLD  +C +GTL 
Sbjct: 548 ISEETDLIEPTLLDELICYIGTLA 571


>sp|O35643|AP1B1_MOUSE AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1b1 PE=1 SV=2
          Length = 943

 Score = 31.2 bits (69), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 26  FTTRPKDLTENYHNCAYGVTNNAEIESFLRSKFMVSRALSTDAAASASIGEVHRAAAGPL 85
           F  +P +  E         T +++        ++  R LSTD  A+  +      A  PL
Sbjct: 492 FLKKPTETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVAAKEV----VLAEKPL 547

Query: 86  VEYERRIIAGELLDGDVCQLGTLG 109
           +  E  +I   LLD  +C +GTL 
Sbjct: 548 ISEETDLIEPTLLDELICYIGTLA 571


>sp|Q10567|AP1B1_HUMAN AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1B1 PE=1 SV=2
          Length = 949

 Score = 31.2 bits (69), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 26  FTTRPKDLTENYHNCAYGVTNNAEIESFLRSKFMVSRALSTDAAASASIGEVHRAAAGPL 85
           F  +P +  E         T +++        ++  R LSTD  A+  +      A  PL
Sbjct: 492 FLKKPTETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVAAKEV----VLAEKPL 547

Query: 86  VEYERRIIAGELLDGDVCQLGTLG 109
           +  E  +I   LLD  +C +GTL 
Sbjct: 548 ISEETDLIEPTLLDELICYIGTLA 571


>sp|Q9LMH5|PPR42_ARATH Putative pentatricopeptide repeat-containing protein At1g13800
           OS=Arabidopsis thaliana GN=At1g13800 PE=3 SV=1
          Length = 883

 Score = 30.4 bits (67), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 20/83 (24%)

Query: 103 CQLGTLGELQRLYDELVES-------------ADACKLDRYSSSEKSGDSPVSLQESVAV 149
           C++G LGE +R++D+++ES             A  CK+     ++   D  +       V
Sbjct: 772 CKIGDLGEAKRIFDQMIESGVDPDAAPYTALIACCCKMGYLKEAKMIFDRMIESGVKPDV 831

Query: 150 VTFTATI-------FILTCQRIV 165
           V +TA I       F+L   ++V
Sbjct: 832 VPYTALIAGCCRNGFVLKAVKLV 854


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.133    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,190,024
Number of Sequences: 539616
Number of extensions: 2476708
Number of successful extensions: 5434
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5432
Number of HSP's gapped (non-prelim): 8
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)