Query 046724
Match_columns 197
No_of_seqs 56 out of 58
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 06:12:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y9t_A Tumor protein 63; apopt 53.1 13 0.00046 26.8 3.6 28 102-130 52-79 (82)
2 2avu_E Flagellar transcription 40.9 7 0.00024 32.5 0.5 49 109-192 38-86 (192)
3 2e8n_A Ephrin type-A receptor 37.9 37 0.0013 23.7 3.8 23 102-124 59-81 (88)
4 1x40_A ARAP2; ASAP-related pro 27.0 57 0.0019 23.0 3.3 17 102-118 62-78 (91)
5 1ucv_A Ephrin type-A receptor 22.8 78 0.0027 21.7 3.3 18 102-119 54-71 (81)
6 4ham_A LMO2241 protein; struct 22.5 62 0.0021 23.4 2.9 24 88-111 23-48 (134)
7 1twf_J DNA-directed RNA polyme 21.2 17 0.00058 26.2 -0.4 40 84-123 17-65 (70)
8 3tqn_A Transcriptional regulat 20.6 73 0.0025 22.5 2.9 25 87-111 17-43 (113)
9 2eao_A Ephrin type-B receptor 17.3 1.1E+02 0.0039 21.7 3.3 18 102-119 69-86 (99)
10 1d9c_A Interferon-gamma; helic 15.6 1.4E+02 0.0046 23.4 3.5 36 83-118 84-120 (121)
No 1
>2y9t_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle; NMR {Homo sapiens}
Probab=53.05 E-value=13 Score=26.75 Aligned_cols=28 Identities=11% Similarity=-0.066 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccccccc
Q 046724 102 VCQLGTLGELQRLYDELVESADACKLDRY 130 (197)
Q Consensus 102 ~hQr~iIq~LQ~LYdeLk~Y~p~c~LDRy 130 (197)
.||++|+..+|.|...+ .|.++.+|=|.
T Consensus 52 gHqkkIl~siq~lr~~~-~~~~~~~l~r~ 79 (82)
T 2y9t_A 52 QFRHAIWKGILDHRQLH-EFSSPSHLLRT 79 (82)
T ss_dssp HHHHHHHHHHHHHHHHH-SCCCSSSCCCC
T ss_pred hhHHHHHhhHHHHHHHh-cccchHHHHhc
Confidence 59999999999999888 88888888883
No 2
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=40.86 E-value=7 Score=32.50 Aligned_cols=49 Identities=31% Similarity=0.481 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhccccccccccccCCCCCCCCcccccceeeeeehhheeeeccceeeeecccCCCCcCCCchhhhHHHhh
Q 046724 109 GELQRLYDELVESADACKLDRYSSSEKSGDSPVSLQESVAVVTFTATIFILTCQRIVPLWGSRDWENNVDGPIFLSIALQ 188 (197)
Q Consensus 109 q~LQ~LYdeLk~Y~p~c~LDRy~~s~ksg~sgwl~s~Fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (197)
+.|.+||.||++-.||++.=++ +-- |-- .|..|+|+-+|..|-..
T Consensus 38 ~rl~rLyke~~G~spPkG~lPf-------S~d---------------------------Wf~-tw~~nIhsSlf~~iY~~ 82 (192)
T 2avu_E 38 GRLIKLYKELRGSPPPKGMLPF-------STD---------------------------WFM-TWEQNVHASMFCNAWQF 82 (192)
T ss_dssp HHHHHHHHHHSSSCCCCSCCCC-------CTH---------------------------HHH-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCCC-------cHH---------------------------HHh-CccHhHHHHHHHHHHHH
Confidence 5677899999999888532221 111 222 69999999999999988
Q ss_pred hhhc
Q 046724 189 LEKE 192 (197)
Q Consensus 189 ~~~~ 192 (197)
|.|+
T Consensus 83 l~~~ 86 (192)
T 2avu_E 83 LLKT 86 (192)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 8874
No 3
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.86 E-value=37 Score=23.69 Aligned_cols=23 Identities=17% Similarity=-0.075 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHhhcccc
Q 046724 102 VCQLGTLGELQRLYDELVESADA 124 (197)
Q Consensus 102 ~hQr~iIq~LQ~LYdeLk~Y~p~ 124 (197)
-||++|+..++.|.+....-..+
T Consensus 59 GhRkkIl~ai~~l~~~~~~~~~p 81 (88)
T 2e8n_A 59 GHQKRIAYSLLGLKDQVNTVGIP 81 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCC
T ss_pred hHHHHHHHHHHHHHHhhcccCCC
Confidence 49999999999999887554433
No 4
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=26.97 E-value=57 Score=23.03 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHH
Q 046724 102 VCQLGTLGELQRLYDEL 118 (197)
Q Consensus 102 ~hQr~iIq~LQ~LYdeL 118 (197)
-||++|+..++.|...+
T Consensus 62 GHrkkIl~ai~~L~~~~ 78 (91)
T 1x40_A 62 GHRRRILKQLQIILSKM 78 (91)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhhc
Confidence 59999999999998876
No 5
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=22.77 E-value=78 Score=21.65 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 046724 102 VCQLGTLGELQRLYDELV 119 (197)
Q Consensus 102 ~hQr~iIq~LQ~LYdeLk 119 (197)
-||++|+..++.|.+.+.
T Consensus 54 GhrkkIl~ai~~l~~~~~ 71 (81)
T 1ucv_A 54 GHQKKILGSIQTMRAQLT 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 499999999999998875
No 6
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=22.46 E-value=62 Score=23.42 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=18.3
Q ss_pred HHHHhhcCCccCCCh--hHHHHHHHH
Q 046724 88 YERRIIAGELLDGDV--CQLGTLGEL 111 (197)
Q Consensus 88 YerRV~sGeLrdGD~--hQr~iIq~L 111 (197)
..++|.+|+|+|||. -.+++-++|
T Consensus 23 i~~~I~~G~l~pG~~LPser~La~~~ 48 (134)
T 4ham_A 23 IKEQVVKGVLQEGEKILSIREFASRI 48 (134)
T ss_dssp HHHHHHHTSSCTTCEECCHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCccHHHHHHHH
Confidence 356899999999994 467666655
No 7
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=21.18 E-value=17 Score=26.19 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=27.0
Q ss_pred ChHHHHHHhhcCCccCCChh---------HHHHHHHHHHHHHHHhhccc
Q 046724 84 PLVEYERRIIAGELLDGDVC---------QLGTLGELQRLYDELVESAD 123 (197)
Q Consensus 84 PL~EYerRV~sGeLrdGD~h---------Qr~iIq~LQ~LYdeLk~Y~p 123 (197)
.-++|.++|++|+|.+||-- =|+++-.=-+|-|+|-.|+|
T Consensus 17 ~we~y~~~~~~g~l~~~~~LD~Lg~~RyCCRrMllthvdlie~ll~y~~ 65 (70)
T 1twf_J 17 KWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKFLRYNP 65 (70)
T ss_dssp CHHHHHHHHHTSCCCHHHHHHHTTCCSHHHHHHHHTBCCTHHHHHTCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHcCCcccchhhHHHHHHHHHHHHhcCCc
Confidence 66899999999998775421 12333222367788888885
No 8
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=20.58 E-value=73 Score=22.50 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=20.3
Q ss_pred HHHHHhhcCCccCCC--hhHHHHHHHH
Q 046724 87 EYERRIIAGELLDGD--VCQLGTLGEL 111 (197)
Q Consensus 87 EYerRV~sGeLrdGD--~hQr~iIq~L 111 (197)
...++|.+|+|.||| |-.+++-++|
T Consensus 17 ~i~~~I~~g~~~~G~~lPs~~~La~~~ 43 (113)
T 3tqn_A 17 KIVEAIIDGSYVEGEMIPSIRKISTEY 43 (113)
T ss_dssp HHHHHHHHTSSCTTCEECCHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCcCcCHHHHHHHH
Confidence 456789999999999 5588777766
No 9
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=17.32 E-value=1.1e+02 Score=21.65 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 046724 102 VCQLGTLGELQRLYDELV 119 (197)
Q Consensus 102 ~hQr~iIq~LQ~LYdeLk 119 (197)
-||++|+..++.|.+...
T Consensus 69 GhRkkIl~ai~~l~~~~~ 86 (99)
T 2eao_A 69 GHQKKILNSIHSMRVQIS 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 499999999999998874
No 10
>1d9c_A Interferon-gamma; helical homodimer, immune system; 2.00A {Bos taurus} SCOP: a.26.1.3 PDB: 1d9g_A 1rfb_A
Probab=15.61 E-value=1.4e+02 Score=23.42 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=30.7
Q ss_pred CChHHHHHHhhcCCccCCC-hhHHHHHHHHHHHHHHH
Q 046724 83 GPLVEYERRIIAGELLDGD-VCQLGTLGELQRLYDEL 118 (197)
Q Consensus 83 GPL~EYerRV~sGeLrdGD-~hQr~iIq~LQ~LYdeL 118 (197)
|+..+.+.-..=+.+..+| -.||+.+-+|..+|++|
T Consensus 84 ~~~~kl~~~~~L~~i~vnd~~VQrKAi~EL~~V~~~l 120 (121)
T 1d9c_A 84 GSSEKLEDFKKLIQIPVDDLQIQRKAINELIKVMNDL 120 (121)
T ss_dssp TCHHHHHHHHHHHTCCSSCHHHHHHHHHTHHHHHHHH
T ss_pred CcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHc
Confidence 6788888887778888877 57999999999999987
Done!