Query 046724
Match_columns 197
No_of_seqs 56 out of 58
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 06:12:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046724.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046724hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2avue1 e.64.1.1 (E:5-160) Fla 59.2 1.5 0.00011 33.5 1.2 49 109-192 34-82 (156)
2 d1ucva_ a.60.1.2 (A:) Ephrin t 57.8 4.4 0.00032 26.4 3.3 23 102-124 54-76 (81)
3 d1hw1a1 a.4.5.6 (A:5-78) Fatty 40.5 9.7 0.0007 24.5 2.8 27 86-112 10-38 (74)
4 d2hs5a1 a.4.5.6 (A:25-93) Puta 38.7 12 0.0009 23.4 3.1 26 86-111 9-35 (69)
5 d1v4ra1 a.4.5.6 (A:1-100) Tran 27.2 16 0.0012 24.4 2.2 27 86-112 16-44 (100)
6 d3bwga1 a.4.5.6 (A:5-82) Trans 21.0 28 0.002 21.9 2.4 26 86-111 5-32 (78)
7 d1mqea_ d.113.1.1 (A:) ADP-rib 20.3 59 0.0043 23.8 4.5 36 84-124 146-181 (202)
8 d2hrca1 c.92.1.1 (A:65-423) Fe 19.4 34 0.0025 27.4 3.1 41 99-143 208-248 (359)
9 d2fb1a1 a.4.5.68 (A:150-225) H 19.0 21 0.0015 23.8 1.4 16 107-122 12-27 (76)
10 d1b0xa_ a.60.1.2 (A:) EphA4 re 18.2 44 0.0032 20.7 2.8 19 102-120 51-69 (72)
No 1
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]}
Probab=59.17 E-value=1.5 Score=33.47 Aligned_cols=49 Identities=29% Similarity=0.412 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhccccccccccccCCCCCCCCcccccceeeeeehhheeeeccceeeeecccCCCCcCCCchhhhHHHhh
Q 046724 109 GELQRLYDELVESADACKLDRYSSSEKSGDSPVSLQESVAVVTFTATIFILTCQRIVPLWGSRDWENNVDGPIFLSIALQ 188 (197)
Q Consensus 109 q~LQ~LYdeLk~Y~p~c~LDRy~~s~ksg~sgwl~s~Fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (197)
+.|.+||.|+++..||++.=++ +--||- -|+.|+|+-+|..|-..
T Consensus 34 ~~l~rLykE~~g~sppkG~lP~-------S~dWf~----------------------------t~~~nihsSlf~~iY~~ 78 (156)
T d2avue1 34 GRLIKLYKELRGSPPPKGMLPF-------STDWFM----------------------------TWEQNVHASMFCNAWQF 78 (156)
T ss_dssp HHHHHHHHHHSSSCCCCSCCCC-------CTHHHH----------------------------SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCcCCC-------cchhhc----------------------------ccchhhHHHHHHHHHHH
Confidence 4688999999999999543331 123322 58899999999999887
Q ss_pred hhhc
Q 046724 189 LEKE 192 (197)
Q Consensus 189 ~~~~ 192 (197)
+-+.
T Consensus 79 l~~~ 82 (156)
T d2avue1 79 LLKT 82 (156)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 7653
No 2
>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.81 E-value=4.4 Score=26.35 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHhhcccc
Q 046724 102 VCQLGTLGELQRLYDELVESADA 124 (197)
Q Consensus 102 ~hQr~iIq~LQ~LYdeLk~Y~p~ 124 (197)
.|+++|+.+++.|..++.....+
T Consensus 54 ghr~kIl~~i~~Lk~~~~~~~~~ 76 (81)
T d1ucva_ 54 GHQKKILGSIQTMRAQLTSTQGS 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHHHHHhccCCC
Confidence 69999999999999988776554
No 3
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=40.53 E-value=9.7 Score=24.52 Aligned_cols=27 Identities=7% Similarity=-0.052 Sum_probs=21.6
Q ss_pred HHHHHHhhcCCccCCChh--HHHHHHHHH
Q 046724 86 VEYERRIIAGELLDGDVC--QLGTLGELQ 112 (197)
Q Consensus 86 ~EYerRV~sGeLrdGD~h--Qr~iIq~LQ 112 (197)
+...++|.+|++.|||.. ++++.+.|+
T Consensus 10 e~i~~~I~~g~~~~G~~LPs~~eLa~~~~ 38 (74)
T d1hw1a1 10 EYIIESIWNNRFPPGTILPAERELSELIG 38 (74)
T ss_dssp HHHHHHHHTTSSCTTSBCCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCcCCCccHHHHHHHHC
Confidence 346789999999999954 888877764
No 4
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=38.67 E-value=12 Score=23.40 Aligned_cols=26 Identities=19% Similarity=0.149 Sum_probs=18.2
Q ss_pred HHHHHHhhcCCccCCChh-HHHHHHHH
Q 046724 86 VEYERRIIAGELLDGDVC-QLGTLGEL 111 (197)
Q Consensus 86 ~EYerRV~sGeLrdGD~h-Qr~iIq~L 111 (197)
+...++|.+|+|+|||.- ++++.+++
T Consensus 9 ~~l~~~I~~g~~~~G~~l~~~~La~~~ 35 (69)
T d2hs5a1 9 GILRDAIIDGTFRPGARLSEPDICAAL 35 (69)
T ss_dssp HHHHHHHHHTSSCTTCEECHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcCccCHHHHHHHH
Confidence 356789999999999942 45554443
No 5
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=27.25 E-value=16 Score=24.40 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=20.9
Q ss_pred HHHHHHhhcCCccCCCh--hHHHHHHHHH
Q 046724 86 VEYERRIIAGELLDGDV--CQLGTLGELQ 112 (197)
Q Consensus 86 ~EYerRV~sGeLrdGD~--hQr~iIq~LQ 112 (197)
+...++|.+|+|.+||. -++++.++|.
T Consensus 16 ~~i~~~I~~g~l~~G~~LPs~r~La~~~~ 44 (100)
T d1v4ra1 16 THFRTLIKSGELAPGDTLPSVADIRAQFG 44 (100)
T ss_dssp HHHHHHTTTTSCCTTSBCCCHHHHHHHSS
T ss_pred HHHHHHHHcCCCCCcCCCccHHHHHHHHC
Confidence 45578999999999994 5777777653
No 6
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=21.00 E-value=28 Score=21.89 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=20.4
Q ss_pred HHHHHHhhcCCccCCCh--hHHHHHHHH
Q 046724 86 VEYERRIIAGELLDGDV--CQLGTLGEL 111 (197)
Q Consensus 86 ~EYerRV~sGeLrdGD~--hQr~iIq~L 111 (197)
++..++|.+|+|+|||. -.+++.+++
T Consensus 5 ~~i~~~I~~g~l~~G~~LPse~~La~~~ 32 (78)
T d3bwga1 5 TEIETYIEEHQLQQGDKLPVLETLMAQF 32 (78)
T ss_dssp HHHHHHHHHTTCCTTCBCCCHHHHHHHT
T ss_pred HHHHHHHHcCCCCCcCCCcCHHHHHHHH
Confidence 45678999999999994 477777654
No 7
>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.35 E-value=59 Score=23.81 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=31.9
Q ss_pred ChHHHHHHhhcCCccCCChhHHHHHHHHHHHHHHHhhcccc
Q 046724 84 PLVEYERRIIAGELLDGDVCQLGTLGELQRLYDELVESADA 124 (197)
Q Consensus 84 PL~EYerRV~sGeLrdGD~hQr~iIq~LQ~LYdeLk~Y~p~ 124 (197)
|++|-.+.|.+|++.+ -.+|-.|..|+....+..++
T Consensus 146 ~~~e~~~~i~~G~I~d-----~~ti~al~~~~~~~~~~~~~ 181 (202)
T d1mqea_ 146 PIAEAARRVLRGEIVN-----SIAIAGVLAVHAVTTGFAQP 181 (202)
T ss_dssp EHHHHHHHHTTTSCCC-----HHHHHHHHHHHHHHTTSCCC
T ss_pred EHHHHHHHHHcCCCCc-----HHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999998 27888899999888888876
No 8
>d2hrca1 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.38 E-value=34 Score=27.42 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=30.8
Q ss_pred CCChhHHHHHHHHHHHHHHHhhccccccccccccCCCCCCCCccc
Q 046724 99 DGDVCQLGTLGELQRLYDELVESADACKLDRYSSSEKSGDSPVSL 143 (197)
Q Consensus 99 dGD~hQr~iIq~LQ~LYdeLk~Y~p~c~LDRy~~s~ksg~sgwl~ 143 (197)
.||+++.++.+..+.+-+.|... .+ -...-|++.|++.|+.
T Consensus 208 ~gdpY~~q~~~t~~~i~~~l~~~-~~---~~~~fQSr~g~~~Wl~ 248 (359)
T d2hrca1 208 RGDPYPQEVSATVQKVMERLEYC-NP---YRLVWQSKVGPMPWLG 248 (359)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTTC-SC---EEEEEECCCSSSCBSS
T ss_pred cCCchHHHHHHHHHHHHHHhccc-hh---hheeeecCCCCCccCC
Confidence 47999999999999998888542 12 1123788888899985
No 9
>d2fb1a1 a.4.5.68 (A:150-225) Hypothetical protein BT0354, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=19.02 E-value=21 Score=23.76 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhcc
Q 046724 107 TLGELQRLYDELVESA 122 (197)
Q Consensus 107 iIq~LQ~LYdeLk~Y~ 122 (197)
||.+||.||+.+-+..
T Consensus 12 TL~eLq~vyE~ilg~~ 27 (76)
T d2fb1a1 12 TLSQLQSLYEAIYGEP 27 (76)
T ss_dssp EHHHHHHHHHHHHTSC
T ss_pred cHHHHHHHHHHHhCCC
Confidence 7899999999999855
No 10
>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.21 E-value=44 Score=20.66 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q 046724 102 VCQLGTLGELQRLYDELVE 120 (197)
Q Consensus 102 ~hQr~iIq~LQ~LYdeLk~ 120 (197)
.|+++|+.+++.|.+.++.
T Consensus 51 ghr~ki~~ai~~Lr~~~~~ 69 (72)
T d1b0xa_ 51 THQNKILSSVQAMRTQMQQ 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6899999999999998865
Done!