BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046726
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 86/165 (52%), Gaps = 10/165 (6%)
Query: 2 ASTTLTARFNQSVTKEALRSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAA 61
+S ++ F T+ ++ AEF++ +V VGS ++ + N + +
Sbjct: 35 SSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGST-----INWGGSENPLPVDMVL 89
Query: 62 IANVFALS--STVYIAANISGGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVM-ASL 118
I+ F LS + V +ISGGH+NPAVT A + I++ ++FY +Q L +++ A +
Sbjct: 90 ISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGI 149
Query: 119 LLRVT--AIGQNIPAYTIAQEMTGFGASLLEGVLTFALVYTVYAA 161
L VT ++ + T+ +T L+E ++TF LV+T++A+
Sbjct: 150 LYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFAS 194
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 80/144 (55%), Gaps = 10/144 (6%)
Query: 20 RSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALSSTVYIAANIS 79
R+ AEF +T FYVF +G AS + +P ++ A+A AL++ V +IS
Sbjct: 11 RAIFAEFFATLFYVFFGLG---ASLRWAPGPLH----VLQVALAFGLALATLVQAVGHIS 63
Query: 80 GGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVM-ASLLLRVT--AIGQNIPAYTIAQ 136
G HVNPAVTFA V +++ A+ Y V+Q+L +V A++L VT A+ N+ T+
Sbjct: 64 GAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 123
Query: 137 EMTGFGASLLEGVLTFALVYTVYA 160
++ A+++E LT V ++A
Sbjct: 124 GVSVGQATIVEIFLTLQFVLCIFA 147
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 80/144 (55%), Gaps = 10/144 (6%)
Query: 20 RSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALSSTVYIAANIS 79
R+ AEF +T FYVF +G AS + +P ++ A+A AL++ V +IS
Sbjct: 7 RAIFAEFFATLFYVFFGLG---ASLRWAPGPLH----VLQVALAFGLALATLVQAVGHIS 59
Query: 80 GGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVM-ASLLLRVT--AIGQNIPAYTIAQ 136
G HVNPAVTFA V +++ A+ Y V+Q+L +V A++L VT A+ N+ T+
Sbjct: 60 GAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 119
Query: 137 EMTGFGASLLEGVLTFALVYTVYA 160
++ A+++E LT V ++A
Sbjct: 120 GVSVGQATIVEIFLTLQFVLCIFA 143
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 80/144 (55%), Gaps = 10/144 (6%)
Query: 20 RSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALSSTVYIAANIS 79
R+ AEF +T FYVF +G AS + +P ++ A+A AL++ V +IS
Sbjct: 5 RAIFAEFFATLFYVFFGLG---ASLRWAPGPLH----VLQVALAFGLALATLVQAVGHIS 57
Query: 80 GGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVM-ASLLLRVT--AIGQNIPAYTIAQ 136
G HVNPAVTFA V +++ A+ Y V+Q+L +V A++L VT A+ N+ T+
Sbjct: 58 GAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 117
Query: 137 EMTGFGASLLEGVLTFALVYTVYA 160
++ A+++E LT V ++A
Sbjct: 118 GVSVGQATIVEIFLTLQFVLCIFA 141
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 82/157 (52%), Gaps = 10/157 (6%)
Query: 10 FNQSVTKEALRSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALS 69
F T+ ++ AEF++ +V VGS ++ + N + + I+ F LS
Sbjct: 4 FKGVWTQAFWKAVTAEFLAMLIFVLLSVGST-----INWGGSENPLPVDMVLISLCFGLS 58
Query: 70 --STVYIAANISGGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVM-ASLLLRVT--A 124
+ V +ISGGH+NPAVT A + I++ ++FY +Q L +++ A +L VT +
Sbjct: 59 IATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPS 118
Query: 125 IGQNIPAYTIAQEMTGFGASLLEGVLTFALVYTVYAA 161
+ + T+ +T L+E ++TF LV+T++A+
Sbjct: 119 VVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFAS 155
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 82/157 (52%), Gaps = 10/157 (6%)
Query: 10 FNQSVTKEALRSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALS 69
F T+ ++ AEF++ +V VGS ++ + N + + I+ F LS
Sbjct: 4 FKGVWTQAFWKAVTAEFLAMLIFVLLSVGST-----INWGGSENPLPVDMVLISLCFGLS 58
Query: 70 --STVYIAANISGGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVM-ASLLLRVT--A 124
+ V +ISGGH+NPAVT A + I++ ++FY +Q L +++ A +L VT +
Sbjct: 59 IATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPS 118
Query: 125 IGQNIPAYTIAQEMTGFGASLLEGVLTFALVYTVYAA 161
+ + T+ +T L+E ++TF LV+T++A+
Sbjct: 119 VVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFAS 155
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 80/144 (55%), Gaps = 10/144 (6%)
Query: 20 RSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALSSTVYIAANIS 79
R+ AEF ++ FYVF +G AS + +P ++ A+A AL++ V +IS
Sbjct: 11 RAICAEFFASLFYVFFGLG---ASLRWAPGPLH----VLQVALAFGLALATLVQAVGHIS 63
Query: 80 GGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVM-ASLLLRVT--AIGQNIPAYTIAQ 136
G HVNPAVTFA V +++ A+ Y V+Q+L +V A++L VT A+ N+ T+
Sbjct: 64 GAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 123
Query: 137 EMTGFGASLLEGVLTFALVYTVYA 160
++ A+++E LT V ++A
Sbjct: 124 GVSVGQATIVEIFLTLQFVLCIFA 147
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 12/149 (8%)
Query: 20 RSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALSSTVYIAANIS 79
R+ +AEFI+T +++ V + + K + + L+ A A + VY A IS
Sbjct: 62 RAAIAEFIATLLFLYITVATVIGHSKET--VVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 119
Query: 80 GGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVMASLLLRVTAIGQ----NIPAYTIA 135
GGH+NPAVTF ++ +++ AL Y ++Q L ++ L++ G A ++A
Sbjct: 120 GGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 179
Query: 136 ---QEMTGFGASLLEGVLTFALVYTVYAA 161
+ T GA ++ TF LVYTV++A
Sbjct: 180 LGYNKGTALGAEIIG---TFVLVYTVFSA 205
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 12/149 (8%)
Query: 20 RSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALSSTVYIAANIS 79
R+ +AEFI+T +++ V + + K + + L+ A A + VY A IS
Sbjct: 39 RAAIAEFIATLLFLYITVATVIGHSKET--VVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 96
Query: 80 GGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVMASLLLRVTAIGQ----NIPAYTIA 135
GGH+NPAVTF ++ +++ AL Y ++Q L ++ L++ G A ++A
Sbjct: 97 GGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 156
Query: 136 ---QEMTGFGASLLEGVLTFALVYTVYAA 161
+ T GA ++ TF LVYTV++A
Sbjct: 157 LGYNKGTALGAEIIG---TFVLVYTVFSA 182
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 12/149 (8%)
Query: 20 RSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALSSTVYIAANIS 79
R+ +AEFI+T +++ V + + K + + L+ A A + VY A IS
Sbjct: 39 RAAIAEFIATLLFLYITVATVIGHSKET--VVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 96
Query: 80 GGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVMASLLLRVTAIGQ----NIPAYTIA 135
GGH+NPAVTF ++ +++ AL Y ++Q L ++ L++ G A ++A
Sbjct: 97 GGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 156
Query: 136 ---QEMTGFGASLLEGVLTFALVYTVYAA 161
+ T GA ++ TF LVYTV++A
Sbjct: 157 LGYNKGTALGAEIIG---TFVLVYTVFSA 182
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 12/149 (8%)
Query: 20 RSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALSSTVYIAANIS 79
R+ +AEFI+T +++ V + + K + + L+ A A + VY A IS
Sbjct: 62 RAAIAEFIATLLFLYITVATVIGHSKET--VVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 119
Query: 80 GGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVMASLLLRVTAIGQ----NIPAYTIA 135
GGH+NPAVTF ++ + + AL Y ++Q L ++ L++ G A ++A
Sbjct: 120 GGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 179
Query: 136 ---QEMTGFGASLLEGVLTFALVYTVYAA 161
+ T GA ++ TF LVYTV++A
Sbjct: 180 LGYNKGTALGAEIIG---TFVLVYTVFSA 205
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 12/149 (8%)
Query: 20 RSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALSSTVYIAANIS 79
R+ +AEFI+T +++ V + + K + + L+ A A + VY A IS
Sbjct: 58 RAAIAEFIATLLFLYITVATVIGHSKET--VVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 115
Query: 80 GGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVMASLLLRVTAIGQ----NIPAYTIA 135
GGH+NPAVTF ++ + + AL Y ++Q L ++ L++ G A ++A
Sbjct: 116 GGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 175
Query: 136 ---QEMTGFGASLLEGVLTFALVYTVYAA 161
+ T GA ++ TF LVYTV++A
Sbjct: 176 LGYNKGTALGAEIIG---TFVLVYTVFSA 201
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 61/131 (46%), Gaps = 25/131 (19%)
Query: 13 SVTKEALRSYLAEFISTFFYVFAVVGSA-----MASKKLSPD-------AASNTSSLVVA 60
S+TK + AEFI TF VF GSA +AS SP+ V
Sbjct: 3 SLTKRCI----AEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAI 58
Query: 61 AIANVFALSSTVYIAANISGGHVNPAVTFA----KAVSGHITVPTALFYWVSQMLASVMA 116
+A FA+++++Y NISG H+NPAVT K G VP Y ++Q+L +
Sbjct: 59 GLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVP----YIIAQLLGAAFG 114
Query: 117 S-LLLRVTAIG 126
S + L+ IG
Sbjct: 115 SFIFLQCAGIG 125
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 20 RSYLAEFISTFFYVFAVVGSAMASKKLSPDA-ASNTSSLVVAAIANVFALSSTVYIAANI 78
++ LAE + TF + ++G A+ + +P A L VA I NI
Sbjct: 145 QAMLAEVVGTFLLMITIMGIAVDER--APKGFAGIIIGLTVAGIITTLG---------NI 193
Query: 79 SGGHVNPAVTFAKAVSGHITVPTALF-----YWVSQMLASVMASL 118
SG +NPA TF ++ I T L+ Y + ++ +V+A+L
Sbjct: 194 SGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAAL 238
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 79/149 (53%), Gaps = 14/149 (9%)
Query: 20 RSYLAEFISTFFYVFAVVGSAM----ASKKLSPDAASNTSSLVVAAIANVFALSSTVYIA 75
++ AEF++ +V +GS + K L D +V+ ++ ++++ V
Sbjct: 5 KAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVD-------MVLISLCFGLSIATMVQCF 57
Query: 76 ANISGGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVM-ASLLLRVT--AIGQNIPAY 132
+ISGGH+NPAVT A + I++ ++FY +Q L +++ A +L VT ++ +
Sbjct: 58 GHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVT 117
Query: 133 TIAQEMTGFGASLLEGVLTFALVYTVYAA 161
+ +T L+E ++TF LV+T++A+
Sbjct: 118 MVHGNLTAGHGLLVELIITFQLVFTIFAS 146
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 58/101 (57%)
Query: 20 RSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALSSTVYIAANIS 79
R+ +AEF++T +VF +GSA+ K + + V ++A ++++ +IS
Sbjct: 12 RAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHIS 71
Query: 80 GGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVMASLLL 120
G H+NPAVT +S I++ AL Y ++Q + +++A+ +L
Sbjct: 72 GAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAIL 112
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 12/147 (8%)
Query: 19 LRSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALSSTVYIAANI 78
L++ AEF++T +VF +GSA+ P +++ A+A A+ + +
Sbjct: 12 LKAVFAEFLATLIFVFFGLGSALKWPSALP-------TILQIALAFGLAIGTLAQALGPV 64
Query: 79 SGGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVMASLLL----RVTAIGQNIPAYTI 134
SGGH+NPA+T A V I++ A FY +Q++ ++ + +L + A G
Sbjct: 65 SGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNALN 124
Query: 135 AQEMTGFGASLLEGVLTFALVYTVYAA 161
G A ++E +LTF L ++A+
Sbjct: 125 NNTTQG-QAMVVELILTFQLALCIFAS 150
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 79 SGGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVMASLL 119
+G +NPA +F AV + P +WV ++ +V+A++L
Sbjct: 181 TGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAIL 221
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 19 LRSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALS--STVYIAA 76
R AE TF+ VF GSA+ + P+ + A +A F L+ + +
Sbjct: 5 FRKLAAECFGTFWLVFGGCGSAVLAAGF-PEL-----GIGFAGVALAFGLTVLTMAFAVG 58
Query: 77 NISGGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVMASLLLRVTAIGQNIPAYTIAQ 136
+ISGGH NPAVT G + Y ++Q++ ++A+ LL Y IA
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALL-----------YLIAS 107
Query: 137 EMTGFGAS 144
TGF A+
Sbjct: 108 GKTGFDAA 115
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 19 LRSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALS--STVYIAA 76
R AE TF+ VF GSA+ + P+ + A +A F L+ + +
Sbjct: 2 FRKLAAECFGTFWLVFGGCGSAVLAAGF-PEL-----GIGFAGVALAFGLTVLTMAFAVG 55
Query: 77 NISGGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVMASLLLRVTAIGQNIPAYTIAQ 136
+ISGGH NPAVT G + Y ++Q++ ++A+ LL Y IA
Sbjct: 56 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALL-----------YLIAS 104
Query: 137 EMTGFGAS 144
TGF A+
Sbjct: 105 GKTGFDAA 112
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Query: 20 RSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALSSTVYIAA--- 76
R+ +AEF++ ++F +GSA+ P ++ T+ V + A ++ A
Sbjct: 12 RAVVAEFLAMILFIFISIGSALGFHY--PIKSNQTTGAVQDNVKVSLAFGLSIATLAQSV 69
Query: 77 -NISGGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVMASLLL 120
+ISG H+NPAVT +S I+V A+ Y ++Q + +++A+ +L
Sbjct: 70 GHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAIL 114
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
Query: 19 LRSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALSSTVYIAANI 78
R AE TF+ VF GSA+ + P+ + + +A V ++ V +I
Sbjct: 5 FRKLAAECFGTFWLVFGGCGSAVLAAGF-PELGIGFAGVALAWGLTVLTMAFAV---GHI 60
Query: 79 SGGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVMASLLLRVTAIGQNIPAYTIAQEM 138
SGGH NPAVT G + Y ++Q++ ++A+ LL Y IA
Sbjct: 61 SGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALL-----------YLIASGK 109
Query: 139 TGFGAS 144
TGF A+
Sbjct: 110 TGFDAA 115
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 24 AEFISTFFYVFA--VVGSAMASKKLSPDAASNTSSLVVAAIANVFALSSTVYIAANISGG 81
EF+ TF ++++ V+ +PD SN + L++ + F + V+I +SGG
Sbjct: 50 GEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGG 109
Query: 82 HVNPAVTFA 90
++NPAVT A
Sbjct: 110 NLNPAVTLA 118
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 19 LRSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALS--STVYIAA 76
R AE TF+ VF GSA+ + P+ + A +A F L+ + +
Sbjct: 5 FRKLAAESFGTFWLVFGGSGSAVLAAGF-PEL-----GIGFAGVALAFGLTVLTMAFAVG 58
Query: 77 NISGGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVMASLLLRVTAIGQNIPAYTIAQ 136
+ISGGH NPAVT G + Y ++Q++ ++A+ LL Y IA
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALL-----------YLIAS 107
Query: 137 EMTGFGAS 144
TGF A+
Sbjct: 108 GKTGFDAA 115
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 19 LRSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALS--STVYIAA 76
R AE TF+ VF GSA+ + P+ + A +A F L+ + +
Sbjct: 5 FRKLAAESFGTFWLVFGGSGSAVLAAGF-PEL-----GIGFAGVALAFGLTVLTMAFAVG 58
Query: 77 NISGGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVMASLLLRVTAIGQNIPAYTIAQ 136
+ISGGH NPAVT G + Y ++Q++ ++A+ LL Y IA
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALL-----------YLIAS 107
Query: 137 EMTGFGAS 144
TGF A+
Sbjct: 108 GKTGFDAA 115
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 19 LRSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALS--STVYIAA 76
R AE TF+ VF GSA+ + P+ + A +A F L+ + +
Sbjct: 5 FRKLAAESFGTFWLVFGGSGSAVLAAGF-PEL-----GIGFAGVALAFGLTVLTMAFAVG 58
Query: 77 NISGGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVMASLLLRVTAIGQNIPAYTIAQ 136
+ISGGH NPAVT G + Y ++Q++ ++A+ LL Y IA
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALL-----------YLIAS 107
Query: 137 EMTGFGAS 144
TGF A+
Sbjct: 108 GKTGFDAA 115
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 19/128 (14%)
Query: 19 LRSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALS--STVYIAA 76
R AE TF+ VF GSA+ + A + A +A + L+ + +
Sbjct: 5 FRKLAAECFGTFWLVFGGCGSAVLA------AGFPALGIGFAGVALAWGLTVLTMAFAVG 58
Query: 77 NISGGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVMASLLLRVTAIGQNIPAYTIAQ 136
+ISGGH NPAVT G + Y ++Q++ ++A+ LL Y IA
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALL-----------YLIAS 107
Query: 137 EMTGFGAS 144
TGF A+
Sbjct: 108 GKTGFDAA 115
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 20 RSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALS--STVYIAAN 77
R LAEF TF+ VF GSA+ + AA + +A F L+ + Y
Sbjct: 31 RKLLAEFFGTFWLVFGGCGSAVFA------AAFPELGIGFTGVALAFGLTVLTMAYAVGG 84
Query: 78 ISGGHVNPAVTFAKAVSGH 96
ISGGH NPAV+ V+G
Sbjct: 85 ISGGHFNPAVSVGLTVAGR 103
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 20 RSYLAEFISTFFYVF-----AVVGSAMASKKLSPDAASNTSSLVVA-----AIANVFALS 69
+ + AE + TF VF AV+ +A+ P+ + + AI FAL+
Sbjct: 7 KRFTAEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALA 66
Query: 70 --STVYIAANISGGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVMASLL 119
+ +Y ISG H+NPAVT A G + Y V+Q + + + SLL
Sbjct: 67 IAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLL 118
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 20 RSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALSSTVYIAANIS 79
++ L E I TF + ++G A+ ++ P A L V I + NI+
Sbjct: 146 QAILTEAIGTFLLMLVIMGVAV-DERAPPGFAGLVIGLTVGGI---------ITTIGNIT 195
Query: 80 GGHVNPAVTFAK 91
G +NPA TF
Sbjct: 196 GSSLNPARTFGP 207
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 23 LAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALSSTVYIAANISGGH 82
+AEF+ T +F VG A K A ++ ++ I + ++ +Y+ A +SG H
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKV----AGASFGQWEISVIWGL-GVAMAIYLTAGVSGAH 66
Query: 83 VNPAVTFA 90
+NPAVT A
Sbjct: 67 LNPAVTIA 74
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 33.1 bits (74), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 23 LAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALSSTVYIAANISGGH 82
+AEF+ T +F VG A K A ++ ++ I + ++ +Y+ A +SG H
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKV----AGASFGQWEISVIFGL-GVAMAIYLTAGVSGAH 66
Query: 83 VNPAVTFA 90
+NPAVT A
Sbjct: 67 LNPAVTIA 74
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 16 KEALRSYLAEFISTFFYVFAVVGSAMASKKLSPDAASNTSSLVVAAIANVFALSSTVYIA 75
K +R ++ EF+ TF +F +G + + + + L + VF + ++
Sbjct: 7 KSYVREFIGEFLGTFVLMF--LGEGATANFHTTGLSGDWYKLCLGWGLAVFF---GILVS 61
Query: 76 ANISGGHVNPAVTFAKAVSGHITVPTALFYWVSQMLASVMAS 117
A +SG H+N AV+ + + Y+ +Q+L + + +
Sbjct: 62 AKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGT 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.128 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,459,978
Number of Sequences: 62578
Number of extensions: 100037
Number of successful extensions: 342
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 42
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)