BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046727
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SQY|A Chain A, Structure Of Human Diferric Lactoferrin At 2.5a Resolution
Using Crystals Grown At Ph 6.5
Length = 691
Score = 30.4 bits (67), Expect = 0.47, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 134 PFLNWTGPPEPIEAAVAR-FFSASCVPGA 161
>pdb|1LFI|A Chain A, Metal Substitution In Transferrins: The Crystal Structure
Of Human Copper-lactoferrin At 2.1 Angstroms Resolution
Length = 691
Score = 30.4 bits (67), Expect = 0.48, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 134 PFLNWTGPPEPIEAAVAR-FFSASCVPGA 161
>pdb|1FCK|A Chain A, Structure Of Diceric Human Lactoferrin
Length = 692
Score = 30.4 bits (67), Expect = 0.48, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 135 PFLNWTGPPEPIEAAVAR-FFSASCVPGA 162
>pdb|2BJJ|X Chain X, Structure Of Recombinant Human Lactoferrin Produced In The
Milk Of Transgenic Cows
Length = 692
Score = 30.4 bits (67), Expect = 0.50, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 135 PFLNWTGPPEPIEAAVAR-FFSASCVPGA 162
>pdb|1LFG|A Chain A, Structure Of Diferric Human Lactoferrin
Length = 691
Score = 30.4 bits (67), Expect = 0.50, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 134 PFLNWTGPPEPIEAAVAR-FFSASCVPGA 161
>pdb|1LFH|A Chain A, Molecular Replacement Solution Of The Structure Of
Apolactoferrin, A Protein Displaying Large-Scale
Conformational Change
Length = 691
Score = 30.4 bits (67), Expect = 0.50, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 134 PFLNWTGPPEPIEAAVAR-FFSASCVPGA 161
>pdb|1B0L|A Chain A, Recombinant Human Diferric Lactoferrin
Length = 691
Score = 30.4 bits (67), Expect = 0.50, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 134 PFLNWTGPPEPIEAAVAR-FFSASCVPGA 161
>pdb|1LCF|A Chain A, Crystal Structure Of Copper-And Oxalate-Substituted Human
Lactoferrin At 2.0 Angstroms Resolution
Length = 691
Score = 30.4 bits (67), Expect = 0.50, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 134 PFLNWTGPPEPIEAAVAR-FFSASCVPGA 161
>pdb|1CB6|A Chain A, Structure Of Human Apolactoferrin At 2.0 A Resolution.
pdb|1BKA|A Chain A, Oxalate-Substituted Diferric Lactoferrin
Length = 691
Score = 30.4 bits (67), Expect = 0.50, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 134 PFLNWTGPPEPIEAAVAR-FFSASCVPGA 161
>pdb|1N76|A Chain A, Crystal Structure Of Human Seminal Lactoferrin At 3.4 A
Resolution
Length = 690
Score = 30.4 bits (67), Expect = 0.50, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 133 PFLNWTGPPEPIEAAVAR-FFSASCVPGA 160
>pdb|3D8K|A Chain A, Crsytal Structure Of A Phosphatase From A Toxoplasma
Gondii
pdb|3D8K|B Chain B, Crsytal Structure Of A Phosphatase From A Toxoplasma
Gondii
pdb|3D8K|C Chain C, Crsytal Structure Of A Phosphatase From A Toxoplasma
Gondii
pdb|3D8K|D Chain D, Crsytal Structure Of A Phosphatase From A Toxoplasma
Gondii
Length = 377
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 82 VSQDFFSASFIPGAIVYFSYDLPKGDDVVAANSGPFLH 119
+ QD SA +P +F+Y GDD+VA +G F H
Sbjct: 243 LQQDLVSA--VPDVTTFFAY---PGDDIVAGTAGAFAH 275
>pdb|2PMS|A Chain A, Crystal Structure Of The Complex Of Human Lactoferrin
N-Lobe And Lactoferrin-Binding Domain Of Pneumococcal
Surface Protein A
pdb|2PMS|B Chain B, Crystal Structure Of The Complex Of Human Lactoferrin
N-Lobe And Lactoferrin-Binding Domain Of Pneumococcal
Surface Protein A
Length = 344
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 135 PFLNWTGPPEPIEAAVAR-FFSASCVPGA 162
>pdb|1L5T|A Chain A, Crystal Structure Of A Domain-Opened Mutant (R121d) Of The
Human Lactoferrin N-Lobe Refined From A Merohedrally-
Twinned Crystal Form.
pdb|1L5T|B Chain B, Crystal Structure Of A Domain-Opened Mutant (R121d) Of The
Human Lactoferrin N-Lobe Refined From A Merohedrally-
Twinned Crystal Form
Length = 332
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 134 PFLNWTGPPEPIEAAVAR-FFSASCVPGA 161
>pdb|1H43|A Chain A, R210e N-Terminal Lobe Human Lactoferrin
Length = 334
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 135 PFLNWTGPPEPIEAAVAR-FFSASCVPGA 162
>pdb|1LCT|A Chain A, Structure Of The Recombinant N-Terminal Lobe Of Human
Lactoferrin At 2.0 Angstroms Resolution
Length = 333
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 134 PFLNWTGPPEPIEAAVAR-FFSASCVPGA 161
>pdb|1HSE|A Chain A, H253m N Terminal Lobe Of Human Lactoferrin
Length = 334
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 134 PFLNWTGPPEPIEAAVAR-FFSASCVPGA 161
>pdb|1VFD|A Chain A, Human Lactoferrin, N-Terminal Lobe Mutant With Arg 121
Replaced By Glu (R121e)
Length = 330
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 134 PFLNWTGPPEPIEAAVAR-FFSASCVPGA 161
>pdb|1H44|A Chain A, R210l N-Terminal Lobe Human Lactoferrin
Length = 334
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 135 PFLNWTGPPEPIEAAVAR-FFSASCVPGA 162
>pdb|1DSN|A Chain A, D60s N-Terminal Lobe Human Lactoferrin
Length = 333
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 134 PFLNWTGPPEPIEAAVAR-FFSASCVPGA 161
>pdb|1VFE|A Chain A, Human Lactoferrin, N-terminal Lobe Mutant With Arg 121
Replaced By Ser (r121s)
Length = 333
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 134 PFLNWTGPPEPIEAAVAR-FFSASCVPGA 161
>pdb|1LGB|C Chain C, Interaction Of A Legume Lectin With The N2 Fragment Of
Human Lactotransferrin Or With The Isolated Biantennary
Glycopeptide: Role Of The Fucose Moiety
Length = 159
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 44 PFLNWTGPPEPIEAAVAR-FFSASCVPGA 71
>pdb|1EH3|A Chain A, R210k N-Terminal Lobe Human Lactoferrin
Length = 334
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 135 PFLDWTGPPEPIEAAVAR-FFSASCVPGA 162
>pdb|1H45|A Chain A, R210g N-Terminal Lobe Human Lactoferrin
Length = 334
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 67 PFYLYTTPPKKIIKDVSQDFFSASFIPGA 95
PF +T PP+ I V++ FFSAS +PGA
Sbjct: 135 PFLDWTGPPEPIEAAVAR-FFSASCVPGA 162
>pdb|2FNC|A Chain A, Thermotoga Maritima Maltotriose Binding Protein Bound With
Maltotriose
Length = 381
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 48 ETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDLPKGD 107
+TM L++ K++ + Y + I DV+ +FSA FI G Y + P+G
Sbjct: 123 KTMDELIEKAKQIDEE-------YGGEVRGFIYDVANFYFSAPFILGYGGYVFKETPQGL 175
Query: 108 DVV---AANSG 115
DV AN G
Sbjct: 176 DVTDIGLANEG 186
>pdb|3OM7|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
Length = 456
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 8 SIQKKIREAEEAARKSKFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRV-LSQPDL 66
S +KK+ E + S A+ + D++TL+ P T ++ D ++R + + D
Sbjct: 274 SEKKKLLEGSNKEKASLANGALGIIELNDDYTLKKVMKPLITSNTVTDEIERANIFKKDG 333
Query: 67 PFYLYTTP--PKKIIKDVSQD 85
+YL+T K I + QD
Sbjct: 334 KWYLFTDSRGSKMTIDGIGQD 354
>pdb|3OM5|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
Length = 456
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 8 SIQKKIREAEEAARKSKFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRV-LSQPDL 66
S +KK+ E + S A+ + D++TL+ P T ++ D ++R + + D
Sbjct: 274 SEKKKLLEGSNKEKASLANGALGIIELNDDYTLKKVMKPLITSNTVTDEIERANIFKKDG 333
Query: 67 PFYLYTTP--PKKIIKDVSQD 85
+YL+T K I + QD
Sbjct: 334 KWYLFTDSRGSKMTIDGIGQD 354
>pdb|3OM6|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
Length = 456
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 8 SIQKKIREAEEAARKSKFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRV-LSQPDL 66
S +KK+ E + S A+ + D++TL+ P T ++ D ++R + + D
Sbjct: 274 SEKKKLLEGSNKEKASLANGALGIIELNDDYTLKKVMKPLITSNTVTDEIERANIFKKDG 333
Query: 67 PFYLYTTP--PKKIIKDVSQD 85
+YL+T K I + QD
Sbjct: 334 KWYLFTDSRGSKMTIDGIGQD 354
>pdb|3OM2|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
D257a
Length = 456
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 8 SIQKKIREAEEAARKSKFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRV-LSQPDL 66
S +KK+ E + S A+ + D++TL+ P T ++ D ++R + + D
Sbjct: 274 SEKKKLLEGSNKEKASLANGALGIIELNDDYTLKKVMKPLITSNTVTDEIERANIFKKDG 333
Query: 67 PFYLYTTP--PKKIIKDVSQD 85
+YL+T K I + QD
Sbjct: 334 KWYLFTDSRGSKMTIDGIGQD 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,150,382
Number of Sequences: 62578
Number of extensions: 204602
Number of successful extensions: 584
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 576
Number of HSP's gapped (non-prelim): 39
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)