Query 046727
Match_columns 171
No_of_seqs 162 out of 569
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 06:16:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dzk_A UBX domain-containing p 99.9 7E-21 2.4E-25 139.2 12.1 82 22-103 8-91 (109)
2 3qx1_A FAS-associated factor 1 99.8 2.4E-19 8.4E-24 124.9 10.0 77 24-101 4-82 (84)
3 1wj4_A KIAA0794 protein; UBX d 99.8 4.1E-19 1.4E-23 132.6 9.4 79 24-103 40-120 (124)
4 1s3s_G P47 protein; AAA ATPase 99.8 9.3E-19 3.2E-23 131.1 8.8 77 24-101 49-126 (127)
5 2cr5_A Reproduction 8; UBX dom 99.7 9.9E-18 3.4E-22 122.3 10.8 78 25-103 21-99 (109)
6 2kzr_A Ubiquitin thioesterase 98.7 2.4E-08 8.1E-13 68.9 6.2 73 29-102 2-77 (86)
7 2pjh_A Protein NPL4, nuclear p 97.8 2.3E-05 7.7E-10 53.5 4.0 72 28-100 5-78 (80)
8 3a9j_A Ubiquitin; protein comp 97.7 0.0004 1.4E-08 45.1 9.7 72 29-103 2-73 (76)
9 3phx_B Ubiquitin-like protein 97.6 0.0007 2.4E-08 44.8 9.8 74 26-102 3-76 (79)
10 1ndd_A NEDD8, protein (ubiquit 97.6 0.00081 2.8E-08 43.7 9.7 71 29-102 2-72 (76)
11 1yx5_B Ubiquitin; proteasome, 97.6 0.00077 2.6E-08 46.7 9.9 73 29-104 2-74 (98)
12 3mtn_B UBA80, ubcep1, ubiquiti 97.6 0.00081 2.8E-08 44.8 9.6 75 27-104 3-77 (85)
13 4dwf_A HLA-B-associated transc 97.6 0.00098 3.3E-08 45.3 10.0 77 26-106 4-80 (90)
14 2dzi_A Ubiquitin-like protein 97.5 0.0014 4.9E-08 43.2 9.7 74 26-102 6-79 (81)
15 3dbh_I NEDD8; cell cycle, acti 97.4 0.0015 5E-08 43.9 9.3 74 26-102 11-84 (88)
16 2kan_A Uncharacterized protein 97.4 0.0031 1.1E-07 43.7 10.7 78 24-104 12-89 (94)
17 3n3k_B Ubiquitin; hydrolase, p 97.3 0.0014 4.8E-08 43.6 8.5 75 27-104 3-77 (85)
18 2bwf_A Ubiquitin-like protein 97.3 0.0021 7.1E-08 42.0 9.0 71 28-102 5-75 (77)
19 4eew_A Large proline-rich prot 97.3 0.0023 8E-08 43.2 9.5 73 25-101 15-87 (88)
20 1wju_A NEDD8 ultimate buster-1 97.3 0.0018 6.3E-08 46.0 9.2 72 26-100 14-89 (100)
21 3v6c_B Ubiquitin; structural g 97.3 0.003 1E-07 43.1 9.9 77 23-102 13-89 (91)
22 3k9o_B Ubiquitin, UBB+1; E2-25 97.3 0.0027 9.2E-08 43.5 9.7 73 29-104 3-75 (96)
23 1wia_A Hypothetical ubiquitin- 97.3 0.0025 8.5E-08 43.8 9.5 74 26-104 6-79 (95)
24 1wh3_A 59 kDa 2'-5'-oligoadeny 97.3 0.0055 1.9E-07 41.1 11.0 76 26-104 6-81 (87)
25 1we6_A Splicing factor, putati 97.3 0.0045 1.5E-07 44.0 10.9 79 23-104 23-105 (111)
26 4fbj_B NEDD8; effector-HOST ta 97.3 0.0025 8.4E-08 43.4 9.1 73 29-104 2-74 (88)
27 1uel_A HHR23B, UV excision rep 97.3 0.0074 2.5E-07 41.6 11.7 74 29-105 2-78 (95)
28 1wjn_A Tubulin-folding protein 97.2 0.0031 1.1E-07 43.7 9.3 80 25-104 7-94 (97)
29 1wy8_A NP95-like ring finger p 97.2 0.0084 2.9E-07 40.4 11.2 76 26-104 6-83 (89)
30 2ojr_A Ubiquitin; lanthide-bin 97.2 0.0063 2.2E-07 43.2 10.9 74 26-102 34-107 (111)
31 1we7_A SF3A1 protein; structur 97.2 0.0092 3.2E-07 42.6 11.8 79 23-104 21-109 (115)
32 4hcn_B Polyubiquitin, ubiquiti 97.2 0.0041 1.4E-07 43.1 9.7 74 26-102 21-94 (98)
33 2faz_A Ubiquitin-like containi 97.1 0.0054 1.8E-07 40.2 9.5 73 27-102 2-76 (78)
34 2hj8_A Interferon-induced 17 k 97.1 0.0037 1.3E-07 42.4 8.6 74 27-103 4-77 (88)
35 1v5o_A 1700011N24RIK protein; 97.1 0.0067 2.3E-07 42.4 9.9 76 27-104 7-86 (102)
36 3m62_B UV excision repair prot 97.0 0.004 1.4E-07 44.0 8.7 72 29-103 3-74 (106)
37 2uyz_B Small ubiquitin-related 97.0 0.0074 2.5E-07 39.7 9.1 73 27-102 3-75 (79)
38 1ttn_A DC-UBP, dendritic cell- 97.0 0.008 2.7E-07 42.3 9.7 79 23-104 19-97 (106)
39 1wf9_A NPL4 family protein; be 96.9 0.0041 1.4E-07 44.1 7.9 75 28-103 8-95 (107)
40 2wyq_A HHR23A, UV excision rep 96.9 0.011 3.7E-07 39.3 9.7 73 27-102 5-80 (85)
41 1sif_A Ubiquitin; hydrophobic 96.9 0.0068 2.3E-07 41.2 8.7 73 28-103 10-82 (88)
42 2kc2_A Talin-1, F1; FERM, adhe 96.9 0.0066 2.3E-07 45.0 9.0 75 28-102 12-122 (128)
43 3vdz_A Ubiquitin-40S ribosomal 96.9 0.011 3.9E-07 42.0 9.9 74 27-103 35-108 (111)
44 1wyw_B Ubiquitin-like protein 96.9 0.012 4E-07 40.8 9.7 77 23-102 17-93 (97)
45 1wx7_A Ubiquilin 3; ubiquitin- 96.9 0.014 4.9E-07 40.9 10.3 75 26-104 16-90 (106)
46 2klc_A Ubiquilin-1; ubiquitin- 96.8 0.017 5.8E-07 40.3 10.4 74 25-102 23-96 (101)
47 1v2y_A 3300001G02RIK protein; 96.8 0.0036 1.2E-07 44.8 6.7 74 28-103 8-96 (105)
48 1wx8_A Riken cDNA 4931431F19; 96.8 0.011 3.9E-07 40.4 8.9 76 25-104 15-90 (96)
49 1wxv_A BAG-family molecular ch 96.7 0.027 9.3E-07 38.2 10.6 74 26-102 6-84 (92)
50 2kdi_A Ubiquitin, vacuolar pro 96.7 0.019 6.6E-07 41.0 9.8 77 25-104 7-83 (114)
51 1j8c_A Ubiquitin-like protein 96.6 0.032 1.1E-06 40.6 11.0 75 26-104 31-105 (125)
52 2daf_A FLJ35834 protein; hypot 96.6 0.021 7.2E-07 41.7 9.7 73 27-102 15-88 (118)
53 3b08_A Polyubiquitin-C, ubiqui 96.6 0.02 6.8E-07 41.8 9.7 73 29-104 2-74 (152)
54 2kk8_A Uncharacterized protein 96.5 0.017 5.8E-07 39.0 8.4 73 26-101 9-82 (84)
55 2kdb_A Homocysteine-responsive 96.5 0.024 8.4E-07 39.7 9.3 73 24-99 20-98 (99)
56 3plu_A Ubiquitin-like modifier 96.5 0.031 1E-06 39.1 9.6 75 24-101 18-92 (93)
57 1uh6_A Ubiquitin-like 5; beta- 96.4 0.023 7.7E-07 40.3 8.4 72 27-101 28-99 (100)
58 1wgd_A Homocysteine-responsive 96.3 0.07 2.4E-06 36.3 10.7 75 26-103 6-86 (93)
59 3m63_B Ubiquitin domain-contai 96.3 0.011 3.8E-07 41.4 6.7 71 27-101 28-98 (101)
60 1yqb_A Ubiquilin 3; structural 96.3 0.041 1.4E-06 38.3 9.5 75 25-103 20-94 (100)
61 3b08_A Polyubiquitin-C, ubiqui 96.3 0.033 1.1E-06 40.6 9.3 73 27-102 76-148 (152)
62 3l0w_B Monoubiquitinated proli 96.3 0.048 1.6E-06 41.7 10.4 73 29-104 2-74 (169)
63 3rt3_B Ubiquitin-like protein 96.2 0.048 1.6E-06 40.5 10.2 74 27-103 81-154 (159)
64 2kjr_A CG11242; UBL, ubiquitin 96.2 0.038 1.3E-06 38.4 8.8 76 25-100 13-93 (95)
65 3q3f_A Ribonuclease/ubiquitin 96.2 0.02 7E-07 44.8 8.2 74 28-104 106-179 (189)
66 1wgg_A Ubiquitin carboxyl-term 96.1 0.019 6.6E-07 39.8 7.0 70 26-100 6-76 (96)
67 3b1l_X E3 ubiquitin-protein li 95.1 0.00099 3.4E-08 43.6 0.0 70 29-101 2-71 (76)
68 1x1m_A Ubiquitin-like protein 96.1 0.068 2.3E-06 37.5 9.7 75 26-103 11-100 (107)
69 2l7r_A Ubiquitin-like protein 96.0 0.057 1.9E-06 36.9 8.9 71 27-102 19-89 (93)
70 3u30_A Ubiquitin, linear DI-ub 96.0 0.063 2.1E-06 40.5 10.0 79 23-104 16-94 (172)
71 2kd0_A LRR repeats and ubiquit 96.0 0.059 2E-06 36.3 8.8 71 27-101 12-82 (85)
72 2io0_B Small ubiquitin-related 95.9 0.23 7.8E-06 34.1 11.5 75 26-103 4-78 (91)
73 1v86_A DNA segment, CHR 7, way 95.8 0.033 1.1E-06 38.4 7.1 70 26-100 16-85 (95)
74 3rt3_B Ubiquitin-like protein 95.8 0.053 1.8E-06 40.2 8.7 73 28-102 3-76 (159)
75 1v5t_A 8430435I17RIK protein; 95.8 0.045 1.5E-06 37.2 7.5 73 27-101 7-81 (90)
76 1v6e_A Cytoskeleton-associated 95.6 0.11 3.6E-06 35.7 8.9 76 26-101 6-86 (95)
77 1wgh_A Ubiquitin-like 3, HCG-1 95.4 0.23 7.9E-06 35.8 10.4 74 26-102 15-98 (116)
78 1wm3_A Ubiquitin-like protein 95.4 0.28 9.6E-06 31.8 10.0 70 28-100 2-71 (72)
79 3u30_A Ubiquitin, linear DI-ub 95.2 0.1 3.5E-06 39.3 8.4 73 27-102 96-168 (172)
80 2kj6_A Tubulin folding cofacto 95.1 0.14 4.7E-06 35.7 8.3 75 26-100 13-93 (97)
81 1wz0_A Ubiquitin-like protein 95.1 0.3 1E-05 34.4 10.2 77 25-104 22-98 (104)
82 2d07_B Ubiquitin-like protein 95.1 0.3 1E-05 33.5 10.0 76 24-102 14-89 (93)
83 2io1_B Small ubiquitin-related 95.1 0.26 8.8E-06 34.0 9.5 75 26-103 6-80 (94)
84 1se9_A Ubiquitin family; ubiqu 95.0 0.27 9.3E-06 36.0 9.9 78 24-104 13-104 (126)
85 3u5e_m 60S ribosomal protein L 94.9 0.0044 1.5E-07 45.2 0.0 72 29-103 2-73 (128)
86 4a20_A Ubiquitin-like protein 94.9 0.23 7.9E-06 34.6 8.9 75 25-102 17-95 (98)
87 1t0y_A Tubulin folding cofacto 94.9 0.3 1E-05 35.1 9.8 76 27-102 6-86 (122)
88 3ai5_A Yeast enhanced green fl 94.7 0.19 6.6E-06 42.1 9.5 74 25-101 231-304 (307)
89 2gow_A HCG-1 protein, ubiquiti 94.4 0.24 8.2E-06 36.1 8.4 74 26-102 16-99 (125)
90 3a4r_A Nfatc2-interacting prot 94.4 0.55 1.9E-05 31.1 9.6 72 25-99 5-77 (79)
91 2lxa_A Ubiquitin-like protein 94.1 0.24 8.3E-06 33.7 7.4 71 29-102 3-77 (87)
92 4b6w_A Tubulin-specific chaper 94.1 0.42 1.4E-05 32.3 8.5 66 36-102 13-83 (86)
93 4ajy_B Transcription elongatio 94.0 0.41 1.4E-05 34.8 8.7 72 28-103 3-81 (118)
94 2dzm_A FAS-associated factor 1 93.8 0.4 1.4E-05 33.6 8.2 74 28-104 10-83 (100)
95 3u5c_f 40S ribosomal protein S 93.7 0.011 3.9E-07 44.7 0.0 73 29-104 2-74 (152)
96 3ivf_A Talin-1; FERM domain, c 93.7 0.37 1.3E-05 40.5 9.4 76 25-100 83-165 (371)
97 2al3_A TUG long isoform; TUG U 93.5 0.44 1.5E-05 33.0 7.8 71 29-102 11-81 (90)
98 2k8h_A Small ubiquitin protein 93.2 0.6 2.1E-05 33.2 8.5 76 25-103 24-99 (110)
99 2eke_C Ubiquitin-like protein 93.2 0.99 3.4E-05 31.9 9.5 75 24-102 28-102 (106)
100 2dzj_A Synaptic glycoprotein S 92.8 0.72 2.5E-05 31.2 8.1 72 28-100 11-86 (88)
101 3qij_A Protein 4.1; cytoskelet 92.1 0.41 1.4E-05 39.2 7.2 77 25-101 15-94 (296)
102 1h4r_A Merlin; FERM, neurofibr 92.0 0.64 2.2E-05 38.0 8.3 76 24-100 19-98 (314)
103 3jyu_A Ubiquitin carboxyl-term 92.0 1.3 4.4E-05 35.2 9.8 67 39-105 153-223 (231)
104 2fnj_B Transcription elongatio 91.7 0.83 2.8E-05 33.0 7.6 70 29-102 4-80 (118)
105 1oqy_A HHR23A, UV excision rep 91.5 0.91 3.1E-05 38.8 8.9 74 27-103 7-84 (368)
106 4dbg_A Ranbp-type and C3HC4-ty 91.4 1.1 3.8E-05 31.7 7.9 78 22-102 15-99 (105)
107 4a3p_A Ubiquitin carboxyl-term 91.1 1.1 3.9E-05 35.2 8.6 68 38-105 140-211 (217)
108 1ef1_A Moesin; membrane, FERM 91.1 0.82 2.8E-05 36.9 7.9 72 28-100 2-78 (294)
109 2i1j_A Moesin; FERM, coiled-co 90.2 1.1 3.8E-05 40.4 8.6 74 26-100 3-81 (575)
110 3kyd_D Small ubiquitin-related 89.1 4.8 0.00016 28.8 10.3 75 25-102 38-112 (115)
111 3shq_A UBLCP1; phosphatase, hy 88.5 1.2 4.1E-05 37.3 7.0 73 26-100 4-77 (320)
112 2daj_A KIAA0977 protein, COBL- 87.6 2.2 7.6E-05 29.3 6.6 74 26-104 9-83 (91)
113 3au4_A Myosin-X; protein-prote 87.3 1.7 5.9E-05 38.4 7.7 48 26-73 215-264 (555)
114 3pge_A SUMO-modified prolifera 87.3 7.4 0.00025 30.5 10.5 78 24-105 26-103 (200)
115 3pvl_A Myosin VIIA isoform 1; 86.0 2 7E-05 39.3 7.6 48 26-73 262-310 (655)
116 3ivf_A Talin-1; FERM domain, c 84.9 4.3 0.00015 33.9 8.7 72 28-100 4-82 (371)
117 4gmv_A RAS-associated and plec 84.9 4 0.00014 33.6 8.2 71 6-76 10-81 (281)
118 3tix_A Ubiquitin-like protein 84.1 6.7 0.00023 30.9 8.7 77 24-104 54-130 (207)
119 1y8x_B Ubiquitin-activating en 81.9 0.66 2.2E-05 32.5 2.0 61 39-100 6-82 (98)
120 1wgr_A Growth factor receptor- 80.4 4.4 0.00015 28.3 5.9 60 24-83 6-70 (100)
121 2xzm_9 RPS31E; ribosome, trans 79.8 0.36 1.2E-05 37.8 0.0 67 29-103 2-68 (189)
122 4dxa_B KREV interaction trappe 79.5 1 3.6E-05 37.1 2.7 50 25-76 3-55 (322)
123 3onh_A Ubiquitin-activating en 74.5 12 0.00041 27.3 6.9 55 48-103 20-80 (127)
124 2npt_A Dual specificity mitoge 74.0 6.8 0.00023 27.3 5.2 39 27-65 14-54 (106)
125 3tca_A Amyloid beta A4 precurs 69.2 13 0.00044 29.3 6.7 54 22-75 29-83 (291)
126 2al6_A Focal adhesion kinase 1 67.2 7.1 0.00024 32.8 5.0 44 29-72 9-57 (375)
127 1vd2_A Protein kinase C, IOTA 60.0 37 0.0013 23.0 7.2 46 26-72 5-51 (89)
128 1wgy_A RAP guanine nucleotide 58.8 44 0.0015 23.4 8.6 79 24-103 6-87 (104)
129 2jxx_A Nfatc2-interacting prot 50.0 58 0.002 22.2 9.9 72 23-97 21-93 (97)
130 2v1y_A Phosphatidylinositol-4, 49.9 64 0.0022 22.6 10.0 67 25-92 17-95 (108)
131 2dhz_A RAP guanine nucleotide 46.3 79 0.0027 22.6 8.3 78 25-103 7-93 (120)
132 2kmm_A Guanosine-3',5'-BIS(dip 45.5 33 0.0011 21.2 4.3 27 29-57 2-28 (73)
133 4gdk_A Ubiquitin-like protein 45.5 67 0.0023 21.6 6.7 46 27-72 5-55 (91)
134 1oey_A P67-PHOX, neutrophil cy 45.3 66 0.0023 21.5 6.2 45 26-72 4-48 (83)
135 2l05_A Serine/threonine-protei 44.7 40 0.0014 23.3 4.8 36 24-59 14-49 (95)
136 3w1s_C Ubiquitin-like protein 42.0 78 0.0027 21.4 6.1 45 26-72 7-55 (91)
137 1wwt_A Threonyl-tRNA synthetas 41.5 34 0.0012 22.2 4.0 31 25-57 7-38 (88)
138 4eku_A Protein-tyrosine kinase 37.0 33 0.0011 29.1 4.2 46 27-72 21-77 (392)
139 1wxm_A A-RAF proto-oncogene se 32.6 83 0.0028 21.3 4.8 34 26-59 6-39 (86)
140 1c1y_B Proto-onkogene serine/t 31.0 76 0.0026 21.0 4.3 31 29-59 3-33 (77)
141 1wz3_A Autophagy 12B, ATG12B, 30.5 1.3E+02 0.0044 20.4 6.0 46 25-72 11-60 (96)
142 2r2q_A Gamma-aminobutyric acid 30.1 1.4E+02 0.0047 20.6 6.7 52 22-73 22-80 (110)
143 3aqj_A GPV, baseplate assembly 26.4 42 0.0014 24.1 2.7 24 22-45 15-38 (134)
144 4ac7_A Urease subunit gamma; h 26.4 52 0.0018 22.9 2.9 23 24-46 76-98 (100)
145 2e12_A SM-like motif, hypothet 25.9 43 0.0015 23.0 2.4 29 23-51 24-52 (101)
146 1mby_A SAK, serine/threonine k 25.7 48 0.0017 22.5 2.6 20 24-43 19-38 (88)
147 2fvh_A Urease gamma subunit; p 25.5 52 0.0018 23.6 2.9 23 24-46 96-118 (120)
148 4fur_A Urease subunit gamma 2; 25.1 56 0.0019 22.9 2.9 23 24-46 80-102 (104)
149 4ep8_A Urease subunit gamma; a 24.4 60 0.002 22.6 2.9 23 24-46 76-98 (100)
150 1eo6_A GATE-16, golgi-associat 23.8 1.9E+02 0.0065 20.2 8.0 78 22-102 23-110 (117)
151 2k4q_A Major tail protein V; G 23.4 79 0.0027 23.1 3.8 14 26-39 107-120 (156)
152 3hsa_A Pleckstrin homology dom 22.2 1.6E+02 0.0054 21.2 5.0 35 27-61 89-124 (126)
153 2j0j_A Focal adhesion kinase 1 21.2 80 0.0027 28.1 4.0 44 29-72 9-57 (656)
154 3qr7_A GPV, baseplate assembly 20.9 52 0.0018 23.0 2.2 16 31-46 5-20 (115)
155 3vqi_A ATG5; autophagy, E3-lik 20.9 60 0.002 26.4 2.8 40 24-63 196-235 (274)
156 2zjd_A Microtubule-associated 20.7 2.4E+02 0.0082 20.2 7.3 51 22-72 30-89 (130)
157 3p34_A Serine/threonine-protei 20.0 78 0.0027 25.1 3.2 20 29-49 158-177 (232)
No 1
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=99.85 E-value=7e-21 Score=139.20 Aligned_cols=82 Identities=20% Similarity=0.289 Sum_probs=75.7
Q ss_pred hcCCCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeec--CCCCChhhcCCCCceEEEE
Q 046727 22 KSKFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIK--DVSQDFFSASFIPGAIVYF 99 (171)
Q Consensus 22 ~~~~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~--d~~~tL~e~gl~P~a~l~~ 99 (171)
...++.|.||||||||..++.+|+.++||++||+||..++..+..+|.|++++|+|+|+ |+++||.|+||+|+++|++
T Consensus 8 ~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v 87 (109)
T 2dzk_A 8 RDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVL 87 (109)
T ss_dssp CCCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEE
Confidence 34677899999999999999999999999999999999976666799999999999998 6789999999999999999
Q ss_pred EeCC
Q 046727 100 SYDL 103 (171)
Q Consensus 100 ~~~~ 103 (171)
.|..
T Consensus 88 ~~~~ 91 (109)
T 2dzk_A 88 LPAG 91 (109)
T ss_dssp ECCS
T ss_pred EECc
Confidence 9964
No 2
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=99.80 E-value=2.4e-19 Score=124.88 Aligned_cols=77 Identities=21% Similarity=0.348 Sum_probs=69.5
Q ss_pred CCCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeec--CCCCChhhcCCCCceEEEEEe
Q 046727 24 KFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIK--DVSQDFFSASFIPGAIVYFSY 101 (171)
Q Consensus 24 ~~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~--d~~~tL~e~gl~P~a~l~~~~ 101 (171)
.-+.|.||||||||..++.+|++++||++||+||.... ....+|.|++++|++.|. |.++||.|+||+|+++|++.-
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~~-~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKG-FPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHTT-CCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHcC-CCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 45789999999999999999999999999999999843 346799999999999996 778999999999999999863
No 3
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=99.79 E-value=4.1e-19 Score=132.59 Aligned_cols=79 Identities=20% Similarity=0.330 Sum_probs=71.3
Q ss_pred CCCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceee--cCCCCChhhcCCCCceEEEEEe
Q 046727 24 KFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKII--KDVSQDFFSASFIPGAIVYFSY 101 (171)
Q Consensus 24 ~~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l--~d~~~tL~e~gl~P~a~l~~~~ 101 (171)
..+.|.||||||||..++.+|++++||++||+||... .....+|.|+++||+|.| .|.+++|.|+||+|+++|++..
T Consensus 40 ~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 40 NGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp SSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 4578999999999999999999999999999999887 444578999999999999 4778999999999999999997
Q ss_pred CC
Q 046727 102 DL 103 (171)
Q Consensus 102 ~~ 103 (171)
.+
T Consensus 119 ~d 120 (124)
T 1wj4_A 119 SG 120 (124)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 4
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=99.77 E-value=9.3e-19 Score=131.11 Aligned_cols=77 Identities=22% Similarity=0.282 Sum_probs=68.9
Q ss_pred CCCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCC-CCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEe
Q 046727 24 KFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQ-PDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSY 101 (171)
Q Consensus 24 ~~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~-~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~ 101 (171)
.-+.|.||||||||..++.+|+.++||++||+||+.++.+ ...+|.|++++|++.|+|.++||.|+||+|+++ ++.|
T Consensus 49 ~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav-l~k~ 126 (127)
T 1s3s_G 49 AEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVI-VQRL 126 (127)
T ss_dssp TSCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE-EEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE-EEEe
Confidence 4568999999999999999999999999999999998753 357899999999999998899999999999655 5566
No 5
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=99.75 E-value=9.9e-18 Score=122.32 Aligned_cols=78 Identities=15% Similarity=0.237 Sum_probs=70.1
Q ss_pred CCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeec-CCCCChhhcCCCCceEEEEEeCC
Q 046727 25 FTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIK-DVSQDFFSASFIPGAIVYFSYDL 103 (171)
Q Consensus 25 ~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~-d~~~tL~e~gl~P~a~l~~~~~~ 103 (171)
.+.|.||||||||..++.+|+.++||++||+||... .....+|.|++++|++.|. |.++||.|+||.|+++|++.-.+
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~~ 99 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEKE 99 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEECC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeCC
Confidence 678999999999999999999999999999999965 3334689999999999997 67899999999999999998643
No 6
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.71 E-value=2.4e-08 Score=68.91 Aligned_cols=73 Identities=10% Similarity=0.139 Sum_probs=61.0
Q ss_pred EEEEEcCCCceEEEE-eCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeec--CCCCChhhcCCCCceEEEEEeC
Q 046727 29 VIRVRFPDNHTLEVN-FHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIK--DVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 29 ~IRIRfPDg~~lq~~-F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~--d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
.||||.++|..+ .. |.+++|+++|.++|.+...-+...+.|...+|.+.+. |.+++|.++|+.+++.|++.-+
T Consensus 2 ~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 2 RVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred EEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 589999999866 55 9999999999999998865444567887777777774 4678999999999999999865
No 7
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.76 E-value=2.3e-05 Score=53.54 Aligned_cols=72 Identities=18% Similarity=0.283 Sum_probs=56.0
Q ss_pred eEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCc-eeec-CCCCChhhcCCCCceEEEEE
Q 046727 28 AVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPK-KIIK-DVSQDFFSASFIPGAIVYFS 100 (171)
Q Consensus 28 ~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~-k~l~-d~~~tL~e~gl~P~a~l~~~ 100 (171)
-.||||-|||+.. ....+++|+++|++.|.+.+.-+...|.|+..+|. +.+. +.+.+|.++||..+.+|++.
T Consensus 5 m~lRvrs~~G~~R-i~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDGVKR-ITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSEEEE-CCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCCCEE-EEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 5689999999733 33678999999999999988766667888886554 5553 35778999999888888764
No 8
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=97.73 E-value=0.0004 Score=45.14 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=59.5
Q ss_pred EEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCC
Q 046727 29 VIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDL 103 (171)
Q Consensus 29 ~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~ 103 (171)
.|.||.++|..+...+.+++|+++|.+.|.+...-+.....|+.. .+.+.| +.+|.++|+.+++.|++....
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~--g~~L~d-~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA--GKQLED-GRTLSDYNIQRESTLHLVLRL 73 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET--TEECCT-TCBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC--CeECCC-CCcHHHcCCCCCCEEEEEEeC
Confidence 578999999999999999999999999999887655556667653 456755 689999999999999998753
No 9
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=97.62 E-value=0.0007 Score=44.83 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=60.8
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
+...|.||.++|..+...+.+++|+.+|.+.|.....-+.....|+... +.+.| +.+|.++|+..++.|++...
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G--~~L~d-~~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEG--KPLED-QLPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETT--EECCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECC--EECCC-CCcHHHCCCCCCCEEEEEEe
Confidence 3567999999999999999999999999999988766554556676533 66755 68999999999999999864
No 10
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=97.60 E-value=0.00081 Score=43.65 Aligned_cols=71 Identities=13% Similarity=0.272 Sum_probs=58.7
Q ss_pred EEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 29 VIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 29 ~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
.|+||.++|..+...+.+++|+++|.+.|.+...-+.....|+.. .+.+.| +.+|.++|+.+.+.|++...
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~--g~~L~d-~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS--GKQMND-EKTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET--TEECCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC--CEECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 588999999999999999999999999999887655455666643 456644 68999999999999999875
No 11
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=97.58 E-value=0.00077 Score=46.73 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=60.1
Q ss_pred EEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCCC
Q 046727 29 VIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDLP 104 (171)
Q Consensus 29 ~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~~ 104 (171)
.|+||.++|..+...+.+++|+++|.+.|.+...-+.....|+.. .+.+.| +.+|.++|+..++.|++.....
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~--Gk~L~D-~~tL~~~gi~~g~~i~l~~~~~ 74 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA--GKQLED-GRTLSDYNIQKESTLHLVLRLR 74 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEET--TEECCT-TSBTGGGTCCTTCEEEEEECCC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC--CEECCC-CCCHHHcCCCCCCEEEEEEeCC
Confidence 588999999999999999999999999999887655455667653 356754 6899999999999999987643
No 12
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=97.57 E-value=0.00081 Score=44.76 Aligned_cols=75 Identities=15% Similarity=0.172 Sum_probs=62.4
Q ss_pred eeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCCC
Q 046727 27 KAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDLP 104 (171)
Q Consensus 27 ~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~~ 104 (171)
...|.|+.++|..+...+.+++|+.+|.+.|.+...-+.....|+. .-+.+.| +.+|.++|+.+.+.|++.....
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~--~g~~L~d-~~tL~~~~i~~~~~l~l~~r~~ 77 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLED-GRTLSDYNIQKWSTLFLLLRLR 77 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE--TTEECCT-TSBTGGGTCCTTCEEEEECCCC
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE--CCEECCC-CCCHHHcCCCCCCEEEEEEECc
Confidence 4678999999999999999999999999999988765555667764 3366754 6899999999999999998654
No 13
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=97.55 E-value=0.00098 Score=45.28 Aligned_cols=77 Identities=12% Similarity=0.168 Sum_probs=61.6
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCCCC
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDLPK 105 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~~~ 105 (171)
....|.||..+|..+...+.+++|+.+|...|.....-+.....|+.. .+.+.| +.+|.++|+ ...+|++....+.
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~--Gk~L~d-~~tL~~~~i-~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ--GRVLQD-DKKLQEYNV-GGKVIHLVERAPP 79 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET--TEECCT-TSBGGGGTC-TTEEEEEEECCCC
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC--CeECCC-CCCHHHcCC-CCcEEEEEecCCC
Confidence 456899999999999999999999999999999877554445566643 366755 689999999 8999999987654
Q ss_pred C
Q 046727 106 G 106 (171)
Q Consensus 106 ~ 106 (171)
+
T Consensus 80 ~ 80 (90)
T 4dwf_A 80 Q 80 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 14
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.47 E-value=0.0014 Score=43.20 Aligned_cols=74 Identities=14% Similarity=0.150 Sum_probs=59.7
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
....|+|+.++|..+...+.+++|+++|.+.|.+...-+.....|+.. .+.+.| +.+|.++|+.+++.|++...
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~--gk~L~d-~~tL~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK--GKALAD-GKRLSDYSIGPNSKLNLVVK 79 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET--TEECCT-TSBGGGGTCCSSBCCEEECC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC--CeECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 456788998999999999999999999999999877655556677653 456654 68999999999999888753
No 15
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=97.41 E-value=0.0015 Score=43.91 Aligned_cols=74 Identities=12% Similarity=0.254 Sum_probs=60.7
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
....|.|+..+|..+...+.+++|+.+|.+.|.....-+.....|+.. -+.+.| +.+|.++|+...+.|++...
T Consensus 11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~--G~~L~d-~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS--GKQMND-EKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET--TEECCT-TSBGGGGTCCTTCEEEECCC
T ss_pred CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEEC--CeECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 457899999999999999999999999999999887655445566553 356755 78999999999999998765
No 16
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=97.36 E-value=0.0031 Score=43.68 Aligned_cols=78 Identities=19% Similarity=0.194 Sum_probs=62.8
Q ss_pred CCCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCC
Q 046727 24 KFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDL 103 (171)
Q Consensus 24 ~~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~ 103 (171)
......|.||.++| .+...+.+++|+.+|.+.|.....-+.....|+. ..+.+.|.+.+|.++|+.+.+.|++....
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~--~Gk~L~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYY--SGIELADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEE--TTEEECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE--CCEECCCCcccHHHCCCCCCCEEEEEEeC
Confidence 45667899999988 7889999999999999999988765555666764 34677664489999999999999998764
Q ss_pred C
Q 046727 104 P 104 (171)
Q Consensus 104 ~ 104 (171)
.
T Consensus 89 ~ 89 (94)
T 2kan_A 89 I 89 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 17
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=97.34 E-value=0.0014 Score=43.64 Aligned_cols=75 Identities=16% Similarity=0.175 Sum_probs=61.5
Q ss_pred eeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCCC
Q 046727 27 KAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDLP 104 (171)
Q Consensus 27 ~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~~ 104 (171)
...|.|+.++|..+...+.+++|+.+|.+.|.+...-+.....|+.. -+.+.| +.+|.++|+...+.|++.....
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~--g~~L~d-~~tL~~~~i~~~~~i~l~~rl~ 77 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA--GKQLED-GRTLSDYNIHNHSALYLLLKLR 77 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET--BEECCT-TCBTTTTTCCTTCEEEEEECCC
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC--CeECCC-CCCHHHCCCCCCCEEEEEEecc
Confidence 45789999999999999999999999999999887655556677653 356654 6799999999999999998754
No 18
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=97.32 E-value=0.0021 Score=41.96 Aligned_cols=71 Identities=23% Similarity=0.229 Sum_probs=57.6
Q ss_pred eEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 28 AVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 28 ~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
..|+|+. +|......+.+++|+++|.+.|.....-+.....|+.. .+.+.| +.+|.++|+.+++.|++...
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~--gk~L~d-~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS--GKILKD-DQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET--TEECCT-TSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC--CeEcCC-CCCHHHcCCCCCCEEEEEEc
Confidence 5678888 89889999999999999999999887655555666643 466755 58999999999999998753
No 19
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=97.32 E-value=0.0023 Score=43.15 Aligned_cols=73 Identities=11% Similarity=0.138 Sum_probs=58.9
Q ss_pred CCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEe
Q 046727 25 FTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSY 101 (171)
Q Consensus 25 ~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~ 101 (171)
.....|.||..+|..+...+.+++|+.+|.+.|.....-+...-.|+. -.+.+.| +.+|.++|+ ++++|++..
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~--~Gk~L~D-~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY--QGRVLQD-DKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE--TTEECCT-TSBGGGGTC-TTEEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE--CCEECCC-CCcHHHcCC-CCcEEEEEE
Confidence 356789999999999999999999999999999987655444556654 3366755 789999999 899998864
No 20
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.32 E-value=0.0018 Score=45.98 Aligned_cols=72 Identities=11% Similarity=0.029 Sum_probs=59.9
Q ss_pred CeeEEEEEcCC----CceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEE
Q 046727 26 TKAVIRVRFPD----NHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFS 100 (171)
Q Consensus 26 ~~~~IRIRfPD----g~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~ 100 (171)
.-++|+||.|+ +..+...+.+++|+.+|-+.|.+...-+.....|... -|++.| +.+|.+.|+.+++.|++.
T Consensus 14 g~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~--GKiL~D-~~TL~~y~I~~gsti~vl 89 (100)
T 1wju_A 14 GIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVIN--KKQLQL-GKTLEEQGVAHNVKAMVL 89 (100)
T ss_dssp CEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET--TEECCT-TSBHHHHTCCSSEEEEEE
T ss_pred ceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC--CeECCC-CCcHHHcCCCCCCEEEEE
Confidence 45789999999 7799999999999999999999988665556777643 566754 689999999999988665
No 21
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=97.30 E-value=0.003 Score=43.10 Aligned_cols=77 Identities=12% Similarity=0.089 Sum_probs=61.9
Q ss_pred cCCCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 23 SKFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 23 ~~~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
.......|.||..+|..+...+.+++|+.+|.+.|.+...-+.....|+.. .+.+.| +.+|.++|+..++.|++...
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~--Gk~L~D-~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 13 VPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA--GKQLED-GRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp CCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET--TEECCT-TCBTGGGTCCTTCEEEEECC
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC--CeECCC-cCcHHHCCCCCCCEEEEEEe
Confidence 345667899999999999999999999999999999877655445566653 356654 68999999999999998753
No 22
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=97.29 E-value=0.0027 Score=43.48 Aligned_cols=73 Identities=15% Similarity=0.164 Sum_probs=60.2
Q ss_pred EEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCCC
Q 046727 29 VIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDLP 104 (171)
Q Consensus 29 ~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~~ 104 (171)
.|.|+..+|..+...+.+++|+.+|...|.+...-+.....|+. -.+.+.| +.+|.++|+...+.|++.....
T Consensus 3 ~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~--~G~~L~d-~~tL~~~~i~~~~~i~l~~r~~ 75 (96)
T 3k9o_B 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLED-GRTLSDYNIQKESTLHLVLRLR 75 (96)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE--TTEECCT-TSBTGGGTCCTTCEEEEEECCC
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE--CCEECCC-CCcHHHcCCCCCCEEEEEEEcC
Confidence 58899999999999999999999999999988765555566764 3366654 6799999999999999998653
No 23
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.29 E-value=0.0025 Score=43.83 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=59.8
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCCC
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDLP 104 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~~ 104 (171)
....|.|+..+|..+...+.+++|+.+|.+.|.... .....|+. ..+.+.|.+.+|.++|+...+.|++....+
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~--~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIY--QGRLLQDPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEE--TTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEE--CCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence 457788998999999999999999999999998765 33455654 346777655899999999999999987643
No 24
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.29 E-value=0.0055 Score=41.05 Aligned_cols=76 Identities=12% Similarity=0.098 Sum_probs=62.4
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCCC
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDLP 104 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~~ 104 (171)
....|.|+..+|..+...+.+++|+.+|.+.|.+...-+.....|+.. .+.+.| +.+|.++|+...+.|++.....
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~--Gk~L~d-~~tL~~~~i~~g~~i~l~~~~~ 81 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ--GQVLQD-WLGLGIYGIQDSDTLILSKKKG 81 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET--TEECCS-SSBHHHHTCCTTEEEEEEECSC
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEEC--CEEccC-CCCHHHCCCCCCCEEEEEEecc
Confidence 457789999999999999999999999999999887655556677643 356654 6899999999999999998643
No 25
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=97.27 E-value=0.0045 Score=43.95 Aligned_cols=79 Identities=23% Similarity=0.240 Sum_probs=63.5
Q ss_pred cCCCeeEEEEEcC---CCceEEEEeCC-CCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEE
Q 046727 23 SKFTKAVIRVRFP---DNHTLEVNFHP-SETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVY 98 (171)
Q Consensus 23 ~~~~~~~IRIRfP---Dg~~lq~~F~~-~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~ 98 (171)
.......|.|+.| +|..+...+.+ ++|+.+|.+.|.....-+...-.|+.. .+.+.| +.+|.++|+...+.|+
T Consensus 23 ~~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~--Gk~L~D-~~tL~~y~I~~g~~l~ 99 (111)
T 1we6_A 23 QHPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK--AGFLKD-NMSLAHYNVGAGEILT 99 (111)
T ss_dssp HCCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS--SSBCCT-TSBTTTTTCSSSCEEE
T ss_pred hCCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEEC--CEECCC-CCcHHHCCCCCCCEEE
Confidence 3446789999999 89899999998 999999999999887655555667653 355644 6899999999999999
Q ss_pred EEeCCC
Q 046727 99 FSYDLP 104 (171)
Q Consensus 99 ~~~~~~ 104 (171)
+.....
T Consensus 100 l~~r~~ 105 (111)
T 1we6_A 100 LSLRER 105 (111)
T ss_dssp EECSSC
T ss_pred EEEEcC
Confidence 987643
No 26
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=97.27 E-value=0.0025 Score=43.43 Aligned_cols=73 Identities=14% Similarity=0.279 Sum_probs=59.9
Q ss_pred EEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCCC
Q 046727 29 VIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDLP 104 (171)
Q Consensus 29 ~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~~ 104 (171)
.|.|+..+|..+...+.+++|+.+|.+.|.....-+.....|+.. -+.+.| +.+|.++|+...+.|++.....
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~--Gk~L~D-~~tL~~~~i~~g~~l~l~~rl~ 74 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS--GKQMND-EKTAADYKILGGSVLHLVLALR 74 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET--TEECCT-TSBTTTTTCCTTCEEEEECBCC
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEEC--CeECCC-CCcHHHcCCCCCCEEEEEEECC
Confidence 578999999999999999999999999999877655445667653 366655 7899999999999999997653
No 27
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.26 E-value=0.0074 Score=41.56 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=58.5
Q ss_pred EEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcC---CCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCCCC
Q 046727 29 VIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLS---QPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDLPK 105 (171)
Q Consensus 29 ~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~---~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~~~ 105 (171)
.|.||..+|..+...+.+++|+++|.+.|...+. -+.....|+.. .+.+.| +.+|.++|+..++.|++....+.
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~--Gk~L~D-~~tL~~ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA--GKILND-DTALKEYKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET--TEECCT-TSBGGGGTCCSSSEEEEEESSCC
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC--CEECCC-cCcHHHCCCCCCCEEEEEEeCCC
Confidence 5789999999999999999999999999998742 23345666543 466754 68999999999999999876443
No 28
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.21 E-value=0.0031 Score=43.73 Aligned_cols=80 Identities=19% Similarity=0.239 Sum_probs=62.6
Q ss_pred CCeeEEEEEcC---CCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeC---CC-ce-eecCCCCChhhcCCCCceE
Q 046727 25 FTKAVIRVRFP---DNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTT---PP-KK-IIKDVSQDFFSASFIPGAI 96 (171)
Q Consensus 25 ~~~~~IRIRfP---Dg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~---~P-~k-~l~d~~~tL~e~gl~P~a~ 96 (171)
-.-+.|+|+-| +|..++..|..+.|+++|-..|.....-+.....|+.. .| .. .+.|++++|...|+.++..
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~ 86 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC 86 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence 34567777765 68899999999999999999999988766666666553 23 22 2557788999999999999
Q ss_pred EEEEeCCC
Q 046727 97 VYFSYDLP 104 (171)
Q Consensus 97 l~~~~~~~ 104 (171)
|++.+..+
T Consensus 87 I~V~d~~p 94 (97)
T 1wjn_A 87 LLVRWSGP 94 (97)
T ss_dssp EEEECCSS
T ss_pred EEEEecCC
Confidence 99998643
No 29
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.19 E-value=0.0084 Score=40.36 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=61.3
Q ss_pred CeeEEEEEcCCC-ceEEE-EeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCC
Q 046727 26 TKAVIRVRFPDN-HTLEV-NFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDL 103 (171)
Q Consensus 26 ~~~~IRIRfPDg-~~lq~-~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~ 103 (171)
....|.||..+| ..+.. .+.+++|+.+|.+.|.....-+.....|+.. .+.+. ++.+|.++|+...+.|++....
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~--gk~L~-d~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYR--GKQLE-NGYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET--TEECC-SSSBHHHHTCCTTCEEEEEECC
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC--CeECC-CCCCHHHCCCCCCCEEEEEEeC
Confidence 456788999999 68889 4999999999999999887655556677653 35664 4689999999999999999875
Q ss_pred C
Q 046727 104 P 104 (171)
Q Consensus 104 ~ 104 (171)
.
T Consensus 83 ~ 83 (89)
T 1wy8_A 83 D 83 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 30
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=97.18 E-value=0.0063 Score=43.23 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=61.6
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
....|+|+..+|..+...+.+++|+++|.+.|.+...-+.....|+.. .+.+.| +.+|.++|+...+.|++...
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~--Gk~L~D-~~tL~~~gI~~gs~I~l~~r 107 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA--GKQLED-GRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEET--TEECCS-SCBTTTTTCCTTCEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEEC--CEECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 457899999999999999999999999999999887655556777653 356755 68999999999999999875
No 31
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=97.18 E-value=0.0092 Score=42.60 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=63.1
Q ss_pred cCCCeeEEEEEcCC----------CceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCC
Q 046727 23 SKFTKAVIRVRFPD----------NHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFI 92 (171)
Q Consensus 23 ~~~~~~~IRIRfPD----------g~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~ 92 (171)
.....+.|.|++|+ |..+...+.+++|+.+|.+.|.....-+.....|+.. .+.+.| +.+|.++|+.
T Consensus 21 ~~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~--Gk~L~D-~~tL~~y~i~ 97 (115)
T 1we7_A 21 RNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE--GIFIKD-SNSLAYYNMA 97 (115)
T ss_dssp HCCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEET--TEEECT-TSBHHHHTCC
T ss_pred hCCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEC--CEECCC-CCCHHHCCCC
Confidence 34468999999996 5688899999999999999999887655556667653 456754 6899999999
Q ss_pred CceEEEEEeCCC
Q 046727 93 PGAIVYFSYDLP 104 (171)
Q Consensus 93 P~a~l~~~~~~~ 104 (171)
..+.|++.....
T Consensus 98 ~g~~i~lv~rl~ 109 (115)
T 1we7_A 98 SGAVIHLALKER 109 (115)
T ss_dssp SSCEEEEEECCC
T ss_pred CCCEEEEEEEcC
Confidence 999999987643
No 32
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.0041 Score=43.12 Aligned_cols=74 Identities=11% Similarity=0.076 Sum_probs=60.6
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
....|.||..+|..+...+.+++|+.+|.+.|.....-+.....|+.. -+.+. ++.+|.++|+...+.|++...
T Consensus 21 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~--Gk~L~-D~~tL~~~~i~~g~~i~l~~r 94 (98)
T 4hcn_B 21 RPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--GKQLE-DGRTLSDYNIQKESTLHLVLR 94 (98)
T ss_dssp -CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET--TEECC-TTCBSGGGTCCTTEEEEEECB
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC--CEECC-CCCcHHHCCCCCCCEEEEEEe
Confidence 357899999999999999999999999999999887655555677653 36664 467999999999999999865
No 33
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=97.13 E-value=0.0054 Score=40.25 Aligned_cols=73 Identities=12% Similarity=0.106 Sum_probs=58.0
Q ss_pred eeEEEEEcCCCceE-EEE-eCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 27 KAVIRVRFPDNHTL-EVN-FHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 27 ~~~IRIRfPDg~~l-q~~-F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
...|.||..+|..+ ... +.+++|+++|.+.|.....-+.....|+.. .+.+. ++.+|.++|+..++.|++...
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~--g~~L~-d~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR--GKQME-DGHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET--TEECC-TTCBTTTTTCCTTCEEEEEEC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEEC--CEECC-CCCCHHHcCCCCCCEEEEEEe
Confidence 35788999999875 788 999999999999999877655455666643 45665 468999999999999998764
No 34
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=97.09 E-value=0.0037 Score=42.43 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=60.0
Q ss_pred eeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCC
Q 046727 27 KAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDL 103 (171)
Q Consensus 27 ~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~ 103 (171)
...|.||..+|..+...+.+++|+++|.+.|.....-+.....|+.. .+.+. ++.+|.++|+...+.|++....
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~--Gk~L~-D~~tL~~~~I~~g~~i~l~~~~ 77 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE--GKPLE-DQLPLGEYGLKPLSTVFMNLRL 77 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS--SSCCC-TTSBHHHHHCSTTCEEEEEEC-
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC--CEECC-CCCcHHHcCCCCCCEEEEEEEc
Confidence 46789999999999999999999999999999886655555666643 35564 4689999999999999998764
No 35
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.06 E-value=0.0067 Score=42.45 Aligned_cols=76 Identities=12% Similarity=0.078 Sum_probs=59.6
Q ss_pred eeEEEEEcCCC----ceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 27 KAVIRVRFPDN----HTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 27 ~~~IRIRfPDg----~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
...|.|+.+++ ..+...+.+++|+.+|.+.|.....-+.....|+.. .+.+.|...+|.++|+.....|++...
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~--gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYM--EQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEET--TEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEEC--CEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 35688888755 588889999999999999999886654445566643 367777668999999999999999876
Q ss_pred CC
Q 046727 103 LP 104 (171)
Q Consensus 103 ~~ 104 (171)
..
T Consensus 85 ~~ 86 (102)
T 1v5o_A 85 DN 86 (102)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 36
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.004 Score=44.02 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=58.5
Q ss_pred EEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCC
Q 046727 29 VIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDL 103 (171)
Q Consensus 29 ~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~ 103 (171)
.|.||..+|..+...+.+++|+.+|.+.|.....-+...-.|+.. .+.+.| +.+|.++|+..+..|++....
T Consensus 3 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~--Gk~L~D-~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 3 SLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYS--GKVLQD-SKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET--TEECCT-TSBTTTTTCCTTCEEEEECCC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC--CEECCC-cCCHHHcCCCCCCEEEEEEcC
Confidence 578999999999999999999999999999876544444566543 466755 689999999999999999753
No 37
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=96.98 E-value=0.0074 Score=39.71 Aligned_cols=73 Identities=8% Similarity=0.041 Sum_probs=59.9
Q ss_pred eeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 27 KAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 27 ~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
...|.|+-.+|..+.....+++|+.+|.+.|.+...-+.....|+.. -+.+.| +.+|.++|+-..+.|++...
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~--G~~L~d-~~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE--GQRIAD-NHTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET--TEECCT-TCCHHHHTCCTTEEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEEC--CEEeCC-CCCHHHcCCCCCCEEEEEEe
Confidence 46789999999999999999999999999999877655455666543 466754 57999999999999999865
No 38
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.97 E-value=0.008 Score=42.33 Aligned_cols=79 Identities=10% Similarity=0.086 Sum_probs=62.7
Q ss_pred cCCCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 23 SKFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 23 ~~~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
.......|.||..+|..+...+.+++|+.+|...|.....-+.....|+.. .+.+. ++.+|.++|+...+.|++...
T Consensus 19 ~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~--Gk~L~-D~~tL~~ygI~~g~ti~lv~~ 95 (106)
T 1ttn_A 19 NSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS--GRPLT-DKMKFEELKIPKDYVVQVIVS 95 (106)
T ss_dssp --CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET--TEECC-TTSHHHHCCCSSSCEEEEECC
T ss_pred CCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC--CEECC-CCCcHHHcCCCCCCEEEEEEe
Confidence 344567899999999999999999999999999999876555455667653 36664 468999999999999999875
Q ss_pred CC
Q 046727 103 LP 104 (171)
Q Consensus 103 ~~ 104 (171)
.+
T Consensus 96 ~~ 97 (106)
T 1ttn_A 96 QP 97 (106)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 39
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=96.94 E-value=0.0041 Score=44.11 Aligned_cols=75 Identities=25% Similarity=0.366 Sum_probs=56.8
Q ss_pred eEEEEEcCCCceEEEEeC-CCCchHHHHHHHHHhcCCCCCCcEEEeCC-------Cce--ee---cCCCCChhhcCCCCc
Q 046727 28 AVIRVRFPDNHTLEVNFH-PSETMQSLVDFLKRVLSQPDLPFYLYTTP-------PKK--II---KDVSQDFFSASFIPG 94 (171)
Q Consensus 28 ~~IRIRfPDg~~lq~~F~-~~etl~~l~~~V~~~l~~~~~~F~L~~~~-------P~k--~l---~d~~~tL~e~gl~P~ 94 (171)
-.||||-++|.. ..... +++|+.+|.+.|.+...-+.....|+... |.. .+ .+++++|.++|+...
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 579999999976 45677 99999999999999886544455554321 111 33 356789999999999
Q ss_pred eEEEEEeCC
Q 046727 95 AIVYFSYDL 103 (171)
Q Consensus 95 a~l~~~~~~ 103 (171)
.+||+....
T Consensus 87 ~~L~l~~~~ 95 (107)
T 1wf9_A 87 SMVYLAYEG 95 (107)
T ss_dssp CEEECCCSS
T ss_pred CEEEEEeCC
Confidence 999999764
No 40
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=96.94 E-value=0.011 Score=39.33 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=57.9
Q ss_pred eeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhc---CCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 27 KAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVL---SQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 27 ~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l---~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
...|.||..+|..+...+.+++|+++|.+.|...+ .-+.....|+.. .+.+.| +.+|.++|+...+.|++...
T Consensus 5 ~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~--Gk~L~D-~~tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA--GKILSD-DVPIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET--TEECCT-TSBGGGGCCCTTSEEEEEEC
T ss_pred eEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC--CEECcC-CCCHHHcCCCCCCEEEEEEc
Confidence 46788999999999999999999999999999873 223334556543 466754 68999999999999999864
No 41
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=96.92 E-value=0.0068 Score=41.17 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=59.1
Q ss_pred eEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCC
Q 046727 28 AVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDL 103 (171)
Q Consensus 28 ~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~ 103 (171)
..|.|+-.+|..+...+.+++|+++|.+.|.+...-+.....|+.. .+.+.| +.+|.++|+.+.+.|++....
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~--Gk~L~D-~~tL~~~gi~~g~~i~l~~r~ 82 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA--GKQLED-GRTLSDYNIQKESTLHLVLRL 82 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEET--TEECCT-TSBSGGGTCCTTCEEEEEC--
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEEC--CEECCC-CCcHHHcCCCCCCEEEEEEeC
Confidence 4678889999999999999999999999999887655556677653 466755 689999999999999998753
No 42
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.89 E-value=0.0066 Score=44.96 Aligned_cols=75 Identities=8% Similarity=0.087 Sum_probs=58.0
Q ss_pred eEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCC-CCCcEEEeCCCc---------------------------eee
Q 046727 28 AVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQP-DLPFYLYTTPPK---------------------------KII 79 (171)
Q Consensus 28 ~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~-~~~F~L~~~~P~---------------------------k~l 79 (171)
=.|+||+|||.+....-..+.|+..+...|...+.-. ..+|.|...+|. +.+
T Consensus 12 r~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL 91 (128)
T 2kc2_A 12 RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKL 91 (128)
T ss_dssp EEEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSC
T ss_pred ccEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHh
Confidence 3799999999999999999999999999999887642 346888875541 111
Q ss_pred --------cCCCCChhhcCCCCceEEEEEeC
Q 046727 80 --------KDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 80 --------~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
-|.+.||.+-|+.++.+|.++..
T Consensus 92 ~~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 92 HTDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CCSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred cccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 14567888888888888888764
No 43
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=96.88 E-value=0.011 Score=41.96 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=60.9
Q ss_pred eeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCC
Q 046727 27 KAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDL 103 (171)
Q Consensus 27 ~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~ 103 (171)
...|.|+..+|..+...+.+++|+.+|...|.....-+.....|+.. -+.+.| +.+|.++|+...+.|++....
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~--Gk~L~D-~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA--GKQLED-GRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET--TEECCT-TSBTTTTTCCTTCEEEEEECC
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEEC--CEECCC-CCcHHHCCCCCCCEEEEEEec
Confidence 57789999999999999999999999999999887655555667643 366754 579999999999999998753
No 44
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=96.87 E-value=0.012 Score=40.79 Aligned_cols=77 Identities=8% Similarity=0.022 Sum_probs=61.7
Q ss_pred cCCCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 23 SKFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 23 ~~~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
..-....|.|+..+|..+.....+++|+.+|.+.|.....-+.....|+.. -+.|.| +.+|.++|+-...+|++...
T Consensus 17 ~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~--Gk~L~d-~~tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE--GQRIAD-NHTPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp --CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET--TEECCT-TCCHHHHTCCTTCEEEEEES
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC--CeEcCC-CCCHHHCCCCCCCEEEEEEe
Confidence 345668899999999999999999999999999999877655456666653 466754 57999999999999999865
No 45
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.87 E-value=0.014 Score=40.89 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=59.7
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCCC
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDLP 104 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~~ 104 (171)
....|+||..+|. ....+.+++|+.+|.+.|.....-+.....|+.. .+.+.| +.+|.++|+.....|++.....
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~--Gk~L~D-~~tL~~~gi~~g~~i~l~~~~~ 90 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA--GKILKD-PDSLAQCGVRDGLTVHLVIKRQ 90 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET--TEECCT-TSCHHHHTCCTTEEEEEEECCC
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC--CEECCC-cCcHHHcCCCCCCEEEEEEcCC
Confidence 4567889998886 5888999999999999999877655556667643 466754 6899999999999999987643
No 46
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=96.83 E-value=0.017 Score=40.33 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=59.5
Q ss_pred CCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 25 FTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 25 ~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
.....|.|+.. |..+...+.+++|+++|.+.|.....-+.....|+.. .+.+.| +.+|.++|+..++.|++...
T Consensus 23 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~--Gk~L~D-~~tL~~~gI~~g~~I~l~~~ 96 (101)
T 2klc_A 23 PKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFA--GKILKD-QDTLSQHGIHDGLTVHLVIK 96 (101)
T ss_dssp CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEET--TEEECT-TCCTGGGTCCTTCEEEEEEC
T ss_pred CCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEEC--CEECCC-cCcHHHcCCCCCCEEEEEEc
Confidence 45688899988 7788999999999999999999877654445566543 466754 68999999999999999865
No 47
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.81 E-value=0.0036 Score=44.76 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=60.5
Q ss_pred eEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCC---------------CCCcEEEeCCCceeecCCCCChhhcCCC
Q 046727 28 AVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQP---------------DLPFYLYTTPPKKIIKDVSQDFFSASFI 92 (171)
Q Consensus 28 ~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~---------------~~~F~L~~~~P~k~l~d~~~tL~e~gl~ 92 (171)
..|.|+--+|..+.....+++|+.+|-+.|.+...-+ ...|.|. +..+.|.|++++|.+.|+.
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li--~~Gk~L~dD~~tL~dygI~ 85 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT--SAGEKLTEDRKKLRDYGIR 85 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEE--SSSCEECCSSSBHHHHTCC
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEE--eCCcCccCCcCCHHHcCCC
Confidence 5788888899999999999999999999998865311 1357887 4456777778999999999
Q ss_pred CceEEEEEeCC
Q 046727 93 PGAIVYFSYDL 103 (171)
Q Consensus 93 P~a~l~~~~~~ 103 (171)
.++.|+|.--.
T Consensus 86 ~g~~l~lv~~l 96 (105)
T 1v2y_A 86 NRDEVSFIKKL 96 (105)
T ss_dssp SSEEEEEEECS
T ss_pred CCCEEEEEehh
Confidence 99999998754
No 48
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.76 E-value=0.011 Score=40.43 Aligned_cols=76 Identities=13% Similarity=0.110 Sum_probs=59.8
Q ss_pred CCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCCC
Q 046727 25 FTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDLP 104 (171)
Q Consensus 25 ~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~~ 104 (171)
.....|.|+.. |..+...+.+++|+.+|.+.|.....-+.....|+.. .+.+. ++.+|.++|+...+.|++.....
T Consensus 15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~--Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~ 90 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFT--GKILR-DQDILSQRGILDGSTVHVVVRSH 90 (96)
T ss_dssp SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET--TEECC-TTSCHHHHTCCTTEEEECCBCCS
T ss_pred CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC--CEECC-CcCCHHHCCCCCCCEEEEEEeCC
Confidence 35578888888 8888999999999999999999887644444555543 46665 46899999999999999987643
No 49
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.73 E-value=0.027 Score=38.22 Aligned_cols=74 Identities=15% Similarity=0.199 Sum_probs=58.5
Q ss_pred CeeEEEEEcCCCceEEEEeCCC-----CchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEE
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPS-----ETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFS 100 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~-----etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~ 100 (171)
....|.|+.. |......+.++ .|+.+|.+.|.....-+...-.|+.. .+.+.|.+++|.++|+.....|++.
T Consensus 6 ~~~~v~Vk~~-~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~--Gk~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 6 SGLTVTVTHS-NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK--GKSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp SSEEEEEECS-SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET--TEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred CeEEEEEEEC-CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC--CeecCCCcccHHHCCCCCCCEEEEE
Confidence 3567888885 66778899985 99999999999877655556667643 4667776789999999999999997
Q ss_pred eC
Q 046727 101 YD 102 (171)
Q Consensus 101 ~~ 102 (171)
-.
T Consensus 83 ~~ 84 (92)
T 1wxv_A 83 GK 84 (92)
T ss_dssp SC
T ss_pred ec
Confidence 53
No 50
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.019 Score=41.03 Aligned_cols=77 Identities=10% Similarity=0.062 Sum_probs=62.9
Q ss_pred CCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCCC
Q 046727 25 FTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDLP 104 (171)
Q Consensus 25 ~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~~ 104 (171)
..+..|.|+..+|..+...+.+++|+.+|.+.|.....-+.....|+.. .+.+. ++.+|.++|+...+.|++.....
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~--Gk~L~-D~~tL~~ygI~~gstI~l~~~~~ 83 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA--GKQLE-DGRTLSDYNIQRESTLHLVLRLR 83 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET--TEECC-TTCBTTTTTCCSSCEEEEEECCC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC--CEECC-CCCcHHHCCCCCCCEEEEEEEcC
Confidence 3467899999999999999999999999999999887655455666543 45665 46899999999999999997653
No 51
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.63 E-value=0.032 Score=40.65 Aligned_cols=75 Identities=13% Similarity=0.168 Sum_probs=59.5
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCCC
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDLP 104 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~~ 104 (171)
....|.|+.. |..+...+.+++|+.+|.+.|.....-+.....|+.. .+.+. ++.+|.++|+...++|++.....
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~--Gk~L~-D~~tL~dygI~~gstI~lv~~~~ 105 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA--GKILK-DQDTLIQHGIHDGLTVHLVIKRD 105 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET--TEEES-TTSCGGGTTCSSSEEEEEEEC--
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC--CEEcC-CCCCHHHcCCCCCCEEEEEeccC
Confidence 4577888888 8888999999999999999999887655556667643 46675 46899999999999999987644
No 52
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.61 E-value=0.021 Score=41.68 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=59.8
Q ss_pred eeEEEEE-cCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 27 KAVIRVR-FPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 27 ~~~IRIR-fPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
...|.|. .|+|..++..|.++.|+++|-+.+.....-+...-.|... -|.+.| +.||.++|..++..||+.--
T Consensus 15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~--GKiLKD-~eTL~~~gIk~g~TIhLvi~ 88 (118)
T 2daf_A 15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYS--GKILKN-NETLVQHGVKPQEIVQVEIF 88 (118)
T ss_dssp CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEET--TEEECS-SCCHHHHSCCSSCEEEEEEE
T ss_pred cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEEC--CeEcCC-cchHHHcCCCCCCEEEEEEe
Confidence 4566666 8999999999999999999999999988655555555543 577876 56999999999999999864
No 53
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=96.58 E-value=0.02 Score=41.81 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=58.9
Q ss_pred EEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCCC
Q 046727 29 VIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDLP 104 (171)
Q Consensus 29 ~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~~ 104 (171)
.|.|+.++|..+...+.+++|+++|.+.|.+...-+.....|+.. .+.+. ++.+|.++|+..++.|++.....
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~--g~~L~-d~~tL~~~~i~~~~~l~l~~~~~ 74 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA--GKQLE-DGRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET--TEECC-TTSBTGGGTCCTTCEEEEEECCT
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEEC--CeECc-CcccHHHhccCCCCeeEEEeecc
Confidence 578999999999999999999999999999887655445566543 35564 46899999999999999987643
No 54
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=96.55 E-value=0.017 Score=39.04 Aligned_cols=73 Identities=10% Similarity=0.112 Sum_probs=59.7
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCcee-ecCCCCChhhcCCCCceEEEEEe
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKI-IKDVSQDFFSASFIPGAIVYFSY 101 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~-l~d~~~tL~e~gl~P~a~l~~~~ 101 (171)
....|.|+.-+|..+...+.+++|+++|.+.|.....-+.....|+.. .+. +. ++.+|.++|+...+.|++..
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~--Gk~lL~-D~~tL~~y~I~~gs~i~lv~ 82 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD--GIVILR-EDLTVEQCQIVPTSDIQLEV 82 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET--TEECCC-SSSBHHHHTCCTTSCEEEEE
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC--CEEecC-CcCCHHHcCCCCCCEEEEEE
Confidence 467889999999999999999999999999999887655455667643 455 64 46899999999999988864
No 55
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=96.51 E-value=0.024 Score=39.74 Aligned_cols=73 Identities=11% Similarity=0.072 Sum_probs=54.5
Q ss_pred CCCeeEEEEEcCCCc--eEEEEeCCCCchHHHHHHHHHhc--CCCCCCcEEEeCCCceeecCCCCChhhc--CCCCceEE
Q 046727 24 KFTKAVIRVRFPDNH--TLEVNFHPSETMQSLVDFLKRVL--SQPDLPFYLYTTPPKKIIKDVSQDFFSA--SFIPGAIV 97 (171)
Q Consensus 24 ~~~~~~IRIRfPDg~--~lq~~F~~~etl~~l~~~V~~~l--~~~~~~F~L~~~~P~k~l~d~~~tL~e~--gl~P~a~l 97 (171)
......|.||.++|. .+.....+++|+.+|-+.|.+.+ ..+.....|+.. -|.+.| +.+|.+. |+...+.|
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~--Gk~L~D-~~tL~~y~~~I~~~~ti 96 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS--GRLLPD-HLQLKDILRKQDEYHMV 96 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET--TEEECT-TSBTHHHHTTTCSEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC--CEECCC-CCCHHHHhcCCCCCCEE
Confidence 346688999999997 56677799999999999999865 222345667643 467764 6799999 99888888
Q ss_pred EE
Q 046727 98 YF 99 (171)
Q Consensus 98 ~~ 99 (171)
++
T Consensus 97 hL 98 (99)
T 2kdb_A 97 HL 98 (99)
T ss_dssp EE
T ss_pred Ee
Confidence 76
No 56
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=96.49 E-value=0.031 Score=39.15 Aligned_cols=75 Identities=9% Similarity=0.026 Sum_probs=60.9
Q ss_pred CCCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEe
Q 046727 24 KFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSY 101 (171)
Q Consensus 24 ~~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~ 101 (171)
......|-|+.+.|..+...+.|++|+.+|-+.|.....-+...-.|.. --+.+.| ..+|.+.|+-....|++-|
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif--~Gk~LkD-~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK--GGSVLKD-HISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE--TTEECCT-TSBTGGGTCCTTCEEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe--CCEEccC-cCCHHHcCCCCCCEEEEEe
Confidence 3456788899999999999999999999999999887765555667765 3466765 6799999999999998865
No 57
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.36 E-value=0.023 Score=40.27 Aligned_cols=72 Identities=13% Similarity=0.040 Sum_probs=58.5
Q ss_pred eeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEe
Q 046727 27 KAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSY 101 (171)
Q Consensus 27 ~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~ 101 (171)
...|-|+-..|..+.....+++|+++|.+.|.+...-+...-.|.. ..+.+.| +.+|.+.|+.....|++.|
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~--~Gk~L~D-~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKK--WYTIFKD-HVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEE--TTEECCS-SCBHHHHTCCTTEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEE--CCEECCC-CCCHHHcCCCCCCEEEEEe
Confidence 4678888888999999999999999999999988654444555653 3677755 6899999999999998876
No 58
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.35 E-value=0.07 Score=36.25 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=58.3
Q ss_pred CeeEEEEEcCCCc--eEEEEeCCCCchHHHHHHHHHhc--CCCCCCcEEEeCCCceeecCCCCChhhc--CCCCceEEEE
Q 046727 26 TKAVIRVRFPDNH--TLEVNFHPSETMQSLVDFLKRVL--SQPDLPFYLYTTPPKKIIKDVSQDFFSA--SFIPGAIVYF 99 (171)
Q Consensus 26 ~~~~IRIRfPDg~--~lq~~F~~~etl~~l~~~V~~~l--~~~~~~F~L~~~~P~k~l~d~~~tL~e~--gl~P~a~l~~ 99 (171)
....|.||.++|. .+.....+++|+.+|.+.|.... .-+...-.|+.. .+.+.| +.+|.++ |+...+.|++
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~--Gk~L~D-~~tL~~~~~~i~~~~~i~l 82 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS--GKLLLD-HQCLRDLLPKQEKRHVLHL 82 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET--TEECCS-SSCHHHHSCSSSCSEEEEE
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC--CEECcC-cCCHHHHhcCCCCCCEEEE
Confidence 3467999999998 56666669999999999999986 434445667643 466755 5799999 9999999999
Q ss_pred EeCC
Q 046727 100 SYDL 103 (171)
Q Consensus 100 ~~~~ 103 (171)
....
T Consensus 83 v~~~ 86 (93)
T 1wgd_A 83 VCNV 86 (93)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 8653
No 59
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.011 Score=41.38 Aligned_cols=71 Identities=23% Similarity=0.227 Sum_probs=55.7
Q ss_pred eeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEe
Q 046727 27 KAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSY 101 (171)
Q Consensus 27 ~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~ 101 (171)
...|+|+. +|..+...+.+++|+++|.+.|.+...-+...-.|+.. .+.+.| +.+|.++|+..++.|++..
T Consensus 28 ~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~--Gk~L~D-~~tL~~~gI~~g~tI~lv~ 98 (101)
T 3m63_B 28 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS--GKILKD-DQTVESYHIQDGHSVHLVK 98 (101)
T ss_dssp -CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEET--TEECCT-TSBTTTTTCCTTEEEEECC
T ss_pred EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEEC--CEECCC-cCcHHHCCCCCCCEEEEEe
Confidence 46678887 88888889999999999999999877654444566543 366755 7899999999999998864
No 60
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=96.32 E-value=0.041 Score=38.33 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=59.5
Q ss_pred CCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCC
Q 046727 25 FTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDL 103 (171)
Q Consensus 25 ~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~ 103 (171)
.....|.|+..+|. ....+.+++|+.+|.+.|.....-+.....|+.. .+.+.| +.+|.++|+...+.|++....
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~--Gk~L~D-~~tL~~ygI~~gstI~l~~r~ 94 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA--GKILKD-PDSLAQCGVRDGLTVHLVIKR 94 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET--TEECCT-TSBHHHHTCCTTCEEEEEECC
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC--CEECCC-cCcHHHCCCCCCCEEEEEEcC
Confidence 35678999999986 5888999999999999999877544445566543 466754 689999999999999998764
No 61
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=96.28 E-value=0.033 Score=40.59 Aligned_cols=73 Identities=12% Similarity=0.107 Sum_probs=59.4
Q ss_pred eeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 27 KAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 27 ~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
...|.|+..+|..+...+.+++|+.+|.+.|.....-+.....|+. ..+.+. ++.+|.++|+...+.|++...
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~--~g~~L~-d~~tL~~~~i~~~~~i~l~~r 148 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLE-DGRTLSDYNIQKESTLHLVLR 148 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE--TTEECC-TTSBTGGGTCCTTCEEEEEEC
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEE--CCEECC-CCCCHHHcCCCCCCEEEEEEe
Confidence 4577888889999999999999999999999987655545666664 346675 468999999999999999865
No 62
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=96.26 E-value=0.048 Score=41.67 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=60.2
Q ss_pred EEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCCC
Q 046727 29 VIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDLP 104 (171)
Q Consensus 29 ~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~~ 104 (171)
.|.||..+|..+.....+++|+.+|.+.|.....-+.....|+... +.+.| +.+|.++|+..++.|++.....
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G--k~L~D-~~tL~~y~I~~gstI~Lvlrl~ 74 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG--KQLED-GRTLSDYNIQKESTLHLVLRLR 74 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETT--EECCT-TSBGGGGTCCTTCEEEEEECCC
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECC--ccccC-cCcHHHcCCCCCCEEEEEEEec
Confidence 4789999999999999999999999999998776555566776533 55654 6899999999999999997653
No 63
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=96.24 E-value=0.048 Score=40.47 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=60.7
Q ss_pred eeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCC
Q 046727 27 KAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDL 103 (171)
Q Consensus 27 ~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~ 103 (171)
...|.|+..+|..+...+.+++|+++|.+.|.....-+.....|+... +.+.| +.+|.++|+...+.|++....
T Consensus 81 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G--~~L~d-~~tL~~y~i~~g~~l~l~~rl 154 (159)
T 3rt3_B 81 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEG--KPLED-QLPLGEYGLKPLSTVFMNLRL 154 (159)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETT--EECCT-TSBGGGGTCCTTCEEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECC--eecCC-CCCHHHcCCCCCCEEEEEEec
Confidence 456778888999999999999999999999988766555567776543 66755 689999999999999998764
No 64
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=96.21 E-value=0.038 Score=38.40 Aligned_cols=76 Identities=11% Similarity=-0.026 Sum_probs=58.8
Q ss_pred CCeeEEEEEcCCCc--eEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCC-Cce--eecCCCCChhhcCCCCceEEEE
Q 046727 25 FTKAVIRVRFPDNH--TLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTP-PKK--IIKDVSQDFFSASFIPGAIVYF 99 (171)
Q Consensus 25 ~~~~~IRIRfPDg~--~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~-P~k--~l~d~~~tL~e~gl~P~a~l~~ 99 (171)
-..+.|.|+-+.+. .++..|.+++|+++|-..|.....-+...-.|+... ++. .+.+++++|.+.|+.+.+.|++
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 35667778876664 899999999999999999999887665566666542 442 3446678999999999999987
Q ss_pred E
Q 046727 100 S 100 (171)
Q Consensus 100 ~ 100 (171)
.
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 5
No 65
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=96.20 E-value=0.02 Score=44.85 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=60.4
Q ss_pred eEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCCC
Q 046727 28 AVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDLP 104 (171)
Q Consensus 28 ~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~~ 104 (171)
..|.||..+|..+...+.+++|+.+|-+.|.+...-+.....|+. ..+.+.| +.+|.++|+.+.++|++.....
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~--~Gk~L~D-~~tL~dygI~~gstI~Lvlrlr 179 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLED-GRTLSDYNIQKESTLHLVLRLR 179 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE--TTEECCT-TCBGGGGTCCTTCEEEECCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEE--CCEECCC-CCCHHHCCCCCCCEEEEEEEcC
Confidence 578899999999999999999999999999987765444456654 3466755 6899999999999999987643
No 66
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.14 E-value=0.019 Score=39.78 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=53.3
Q ss_pred CeeEEEEEcCCCceE-EEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEE
Q 046727 26 TKAVIRVRFPDNHTL-EVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFS 100 (171)
Q Consensus 26 ~~~~IRIRfPDg~~l-q~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~ 100 (171)
....|+|++ .|..+ ...+.+++|+.+|.+.|.+...-+...-.|+ +..+.+.|. +|.++|+.....|++.
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi--~~Gk~L~D~--tL~~~~I~~g~~i~l~ 76 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM--VKGGTLKDD--DWGNIKMKNGMTVLMM 76 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCE--ETTEECCSS--CCCSCCCCSSCEEECC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE--ECCcCCCCC--CHHHCCCCCCCEEEEE
Confidence 456788886 56777 5889999999999999998765444444555 344677664 9999999999888875
No 67
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=95.06 E-value=0.00099 Score=43.60 Aligned_cols=70 Identities=13% Similarity=0.176 Sum_probs=54.1
Q ss_pred EEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEe
Q 046727 29 VIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSY 101 (171)
Q Consensus 29 ~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~ 101 (171)
.|.||.++|..+...+.+++|+++|.+.|.....-+.....|+. ..+.+.| +.+|.++|+..++.|++..
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~--~gk~L~d-~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIF--AGKELPN-HLTVQNCDLEQQSIVHIVQ 71 (76)
Confidence 47788999998889999999999999999887654434455543 3455654 6899999999998888764
No 68
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.07 E-value=0.068 Score=37.52 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=58.2
Q ss_pred CeeEEEEEcCCC---ceEEEEeCC---------CCchHHHHHHHHHhc--CCCCCC-cEEEeCCCceeecCCCCChhhcC
Q 046727 26 TKAVIRVRFPDN---HTLEVNFHP---------SETMQSLVDFLKRVL--SQPDLP-FYLYTTPPKKIIKDVSQDFFSAS 90 (171)
Q Consensus 26 ~~~~IRIRfPDg---~~lq~~F~~---------~etl~~l~~~V~~~l--~~~~~~-F~L~~~~P~k~l~d~~~tL~e~g 90 (171)
....|.||..+| ......|.+ ++|+.+|.+.|.... .-+... ..|+.. -+.+.| +.+|.++|
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~--Gk~L~D-~~tL~~y~ 87 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC--GRKLKD-DQTLDFYG 87 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET--TEECCT-TCBHHHHT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEEC--CeECCC-CCcHHHcC
Confidence 346789999999 778888765 599999999999987 444445 667643 466754 58999999
Q ss_pred CCCceEEEEEeCC
Q 046727 91 FIPGAIVYFSYDL 103 (171)
Q Consensus 91 l~P~a~l~~~~~~ 103 (171)
+...+.|++....
T Consensus 88 i~~g~~i~lv~~~ 100 (107)
T 1x1m_A 88 IQPGSTVHVLRKS 100 (107)
T ss_dssp CCTTCEEEEEESS
T ss_pred CCCCCEEEEEeCC
Confidence 9999999998653
No 69
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=96.03 E-value=0.057 Score=36.92 Aligned_cols=71 Identities=6% Similarity=-0.066 Sum_probs=56.1
Q ss_pred eeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 27 KAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 27 ~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
...|.|+. |..+...+.+++|+.+|.+.|.+...-+.....|+.. .+.+. ++.+|.++|+...+.|++...
T Consensus 19 ~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~--Gk~L~-D~~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 19 SMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA--GAPLE-DEATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp -CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET--TEECC-TTSBHHHHTCCSSCEEEEECC
T ss_pred cEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC--CEECC-CCCcHHHCCCCCCCEEEEEEe
Confidence 45677787 7888899999999999999999887655455666653 36664 468999999999999999864
No 70
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=96.01 E-value=0.063 Score=40.51 Aligned_cols=79 Identities=14% Similarity=0.150 Sum_probs=61.5
Q ss_pred cCCCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 23 SKFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 23 ~~~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
.......|.|+..+|..+.....+++|+.+|-..|.....-+.....|+.. .+.+.| +.+|.++|+.+.+.|++...
T Consensus 16 ~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~--g~~L~d-~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 16 PRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA--GKQLED-GRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp ---CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET--TEECCT-TCBTGGGTCCTTCEEEEEEC
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC--Cccccc-cCCHhHcCCcccceeeeeec
Confidence 344567889998899999999999999999999999877655445566643 366754 68999999999999999875
Q ss_pred CC
Q 046727 103 LP 104 (171)
Q Consensus 103 ~~ 104 (171)
..
T Consensus 93 ~~ 94 (172)
T 3u30_A 93 LR 94 (172)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 71
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=95.99 E-value=0.059 Score=36.28 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=54.3
Q ss_pred eeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEe
Q 046727 27 KAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSY 101 (171)
Q Consensus 27 ~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~ 101 (171)
...+.+.+ +|..+...+.+++|+++|.+.|.....-+.....|+.. .+.+. ++.+|.++|+.+++.|++..
T Consensus 12 ~~~~~~~~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~--Gk~L~-D~~tL~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 12 TIKLTVKF-GGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFK--GKVLV-ETSTLKQSDVGSGAKLMLMA 82 (85)
T ss_dssp CEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEET--TEECC-TTCBTTTTTCCTTEEEEEEC
T ss_pred cEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC--CeECC-CcCCHHHCCCCCCCEEEEEE
Confidence 34454445 78888899999999999999999877655555667643 45664 46899999999999998864
No 72
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=95.86 E-value=0.23 Score=34.14 Aligned_cols=75 Identities=5% Similarity=-0.041 Sum_probs=61.1
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCC
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDL 103 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~ 103 (171)
....|+|+-.||..+.....++++++.|.+...+...-+...+.|+.. -+.|. .+.|..++++--..+|.+....
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~Fd--G~~l~-~~~Tp~dl~medgD~Idv~~~q 78 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD--GQPIN-ETDTPAQLEMEDEDTIDVFQQQ 78 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEET--TEECC-TTCCTTTTTCCTTEEEEEEECC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC--CEEcC-CCCCHHHcCCCCCCEEEEEEec
Confidence 467899999999999999999999999999999887655556776653 34464 3579999999999999998874
No 73
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.85 E-value=0.033 Score=38.41 Aligned_cols=70 Identities=9% Similarity=0.068 Sum_probs=53.5
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEE
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFS 100 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~ 100 (171)
....|+|++ .|..+...+.+++|+.+|.+.|.....-+...-.|+ +..+.+ |+. +|.++|+.....|++.
T Consensus 16 ~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~--~~Gk~L-dd~-tL~~~~i~~g~~i~lv 85 (95)
T 1v86_A 16 ELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM--YKGLVP-EDK-TLREIKVTSGAKIMVV 85 (95)
T ss_dssp CCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB--SSSBCC-SSS-BHHHHCCCTTEEEEEC
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE--ECCeeC-CcC-cHHHCCCCCCCEEEEE
Confidence 356788886 577788999999999999999998776443344444 334556 444 9999999999999886
No 74
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=95.83 E-value=0.053 Score=40.24 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=58.8
Q ss_pred eEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEE-eCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 28 AVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLY-TTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 28 ~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~-~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
..|.|+..+|..+...+.+++|+.+|-+.|.+...-+...-.|+ ... .+.+ +++.+|.+.|+.+++.|++...
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~-g~~L-~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPS-GVAL-QDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETT-CCBC-CTTSCGGGGTCCTTCEEEEEEC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCC-CCCC-CCCCCHHHcCCCCCCEEEEEcc
Confidence 35889988999999999999999999999999876554455666 312 3556 4568999999999999999875
No 75
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=95.80 E-value=0.045 Score=37.23 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=55.4
Q ss_pred eeEEEEEcCCCceEEE-EeCCCCchHHHHHHHHHhcCCCCCCcEEEeC-CCceeecCCCCChhhcCCCCceEEEEEe
Q 046727 27 KAVIRVRFPDNHTLEV-NFHPSETMQSLVDFLKRVLSQPDLPFYLYTT-PPKKIIKDVSQDFFSASFIPGAIVYFSY 101 (171)
Q Consensus 27 ~~~IRIRfPDg~~lq~-~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~-~P~k~l~d~~~tL~e~gl~P~a~l~~~~ 101 (171)
...|+|++ .|..+.. .+.+++|+.+|.+.|.+...-+...-.|+-. +-.+.+.| +.+|.++|+.+...|++.-
T Consensus 7 ~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D-~~~L~~~~i~~g~~l~l~~ 81 (90)
T 1v5t_A 7 GLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEN-DVKLGALKLKPNTKIMMMG 81 (90)
T ss_dssp SCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCT-TSBHHHHTCCTTEEEEEEC
T ss_pred eEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCC-CCCHHHcCCCCCCEEEEEe
Confidence 46688887 6777788 8899999999999999876555455566521 22355654 6799999999999999874
No 76
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.58 E-value=0.11 Score=35.67 Aligned_cols=76 Identities=14% Similarity=0.003 Sum_probs=57.2
Q ss_pred CeeEEEEEcCCCc-eEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCC--Cce--eecCCCCChhhcCCCCceEEEEE
Q 046727 26 TKAVIRVRFPDNH-TLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTP--PKK--IIKDVSQDFFSASFIPGAIVYFS 100 (171)
Q Consensus 26 ~~~~IRIRfPDg~-~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~--P~k--~l~d~~~tL~e~gl~P~a~l~~~ 100 (171)
..+.|.|+-..+. .++..+.+++|+++|.+.|.....-+...-.|+... ++. .+.+++++|.+.|+...+.|++.
T Consensus 6 ~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 6 SGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp CCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred cEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 4577888876553 689999999999999999999876555555665533 233 13355789999999999999887
Q ss_pred e
Q 046727 101 Y 101 (171)
Q Consensus 101 ~ 101 (171)
-
T Consensus 86 d 86 (95)
T 1v6e_A 86 D 86 (95)
T ss_dssp C
T ss_pred E
Confidence 3
No 77
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.40 E-value=0.23 Score=35.80 Aligned_cols=74 Identities=9% Similarity=0.116 Sum_probs=54.6
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCC--------CCCCcEEEeCCCceeecCCCCChhhcCCCCc--e
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQ--------PDLPFYLYTTPPKKIIKDVSQDFFSASFIPG--A 95 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~--------~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~--a 95 (171)
....|+||.-+|..+...+.+++|+.+|-+.|.+.... +.....|.... |.|.| +.+|.++++-.. .
T Consensus 15 ~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~G--K~LeD-~~TL~~y~I~~~~~~ 91 (116)
T 1wgh_A 15 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQG--RFLHG-NVTLGALKLPFGKTT 91 (116)
T ss_dssp SSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETT--EEECS-SCBTTTTTCCSSCEE
T ss_pred CeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECC--cCCCC-CCcHHHcCCCCCCce
Confidence 34778888899999999999999999999999985321 12345665433 66754 579999997544 5
Q ss_pred EEEEEeC
Q 046727 96 IVYFSYD 102 (171)
Q Consensus 96 ~l~~~~~ 102 (171)
+||+..-
T Consensus 92 tlhLvlr 98 (116)
T 1wgh_A 92 VMHLVAR 98 (116)
T ss_dssp EEEEEEC
T ss_pred EEEEEcc
Confidence 6776654
No 78
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=95.38 E-value=0.28 Score=31.84 Aligned_cols=70 Identities=6% Similarity=-0.036 Sum_probs=55.8
Q ss_pred eEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEE
Q 046727 28 AVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFS 100 (171)
Q Consensus 28 ~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~ 100 (171)
..|+|+-.||..+.....++++++.|.+...+...-+...+.|... .+.|. .+.|..++|+--...|.+.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd--G~~l~-~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD--GQPIN-ETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEET--TEECC-TTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEEC--CEEcC-CCCCHHHcCCCCCCEEEEE
Confidence 5789999999999999999999999999999887655566776653 34454 3578999999888887764
No 79
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=95.20 E-value=0.1 Score=39.31 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=57.2
Q ss_pred eeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 27 KAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 27 ~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
...|.|+..+|..+...+.+++|+.+|...|.....-+.....|+.. .+.+.| +.+|.+.|+...++|++...
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~--g~~L~D-~~tL~~y~i~~g~tl~l~~r 168 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA--GKQLED-GRTLSDYNIQKESTLHLVLR 168 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET--TEECCT-TSBSGGGTCCTTCEEEECC-
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC--CccCCC-CCcHHHhCCCCCCEEEEEEe
Confidence 44566777888888899999999999999999887655555667653 356654 67999999999999998753
No 80
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=95.14 E-value=0.14 Score=35.69 Aligned_cols=75 Identities=12% Similarity=0.095 Sum_probs=57.4
Q ss_pred CeeEEEEEcCCC--ceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCC--Cce--eecCCCCChhhcCCCCceEEEE
Q 046727 26 TKAVIRVRFPDN--HTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTP--PKK--IIKDVSQDFFSASFIPGAIVYF 99 (171)
Q Consensus 26 ~~~~IRIRfPDg--~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~--P~k--~l~d~~~tL~e~gl~P~a~l~~ 99 (171)
..+.|.|.-+.. ..++..|.+++|+++|-+.|.....-+...-.|+... ++. .+.+++++|.+.|+.+.+.|++
T Consensus 13 ~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 13 DSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp CCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred ceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 456777776555 4799999999999999999999877665566675533 233 2335578999999999999988
Q ss_pred E
Q 046727 100 S 100 (171)
Q Consensus 100 ~ 100 (171)
.
T Consensus 93 v 93 (97)
T 2kj6_A 93 I 93 (97)
T ss_dssp E
T ss_pred E
Confidence 6
No 81
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.12 E-value=0.3 Score=34.40 Aligned_cols=77 Identities=5% Similarity=-0.053 Sum_probs=61.6
Q ss_pred CCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCCC
Q 046727 25 FTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDLP 104 (171)
Q Consensus 25 ~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~~ 104 (171)
-.+..|+|+-.||..+.....+++++..|++...+...-+...+.|+.. -+.|. .+.|..++++--..+|++.+...
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~Fd--G~~l~-~~~Tp~dl~medgD~Idv~~~q~ 98 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD--GQPIN-ETDTPAQLEMEDEDTIDVFQQQT 98 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESS--SSBCC-TTSCTTTTTCCTTEEEEECCCCC
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEEC--CEEcC-CCCCHHHcCCCCCCEEEEEEecc
Confidence 4578899999999999999999999999999999877655456666543 33454 45799999999999999988643
No 82
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=95.11 E-value=0.3 Score=33.49 Aligned_cols=76 Identities=5% Similarity=-0.044 Sum_probs=60.8
Q ss_pred CCCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 24 KFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 24 ~~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
.-.+..|+|+-.||..+.....++++++.|++...+...-+...+.|+.. -+.|. .+.|..++++--..+|.+.+.
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd--G~~l~-~~~Tp~dl~medgD~Idv~~~ 89 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD--GQPIN-ETDTPAQLEMEDEDTIDVFQQ 89 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEET--TEECC-TTCCTTTTTCCTTEEEEEEEC
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEEC--CEEcC-CCCCHHHcCCCCCCEEEEEee
Confidence 45688999999999999999999999999999999887655456666543 34454 457999999999999998876
No 83
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=95.06 E-value=0.26 Score=34.01 Aligned_cols=75 Identities=5% Similarity=-0.041 Sum_probs=61.0
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCC
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDL 103 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~ 103 (171)
.+..|+|+-.||..+.....++++++.|.+.+.+...-+...+.|+.. -+.|. .+.|+.++++--..+|++....
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~Fd--G~~l~-~~~Tp~dl~medgD~Idv~~~~ 80 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD--GQPIN-ETDTPAQLEMEDEDTIDVFQQQ 80 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET--TEECC-TTCCTTTTTCCTTCEEEEEECC
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEEC--CEEcC-CCCCHHHcCCCCCCEEEEEEec
Confidence 467899998999999999999999999999999887655556666543 34464 4579999999999999999874
No 84
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.01 E-value=0.27 Score=36.04 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=56.5
Q ss_pred CCCeeEEEEEcCCCceE-EEEeCCCCchHHHHHHHHHhcCCC--CCC-----cEEEeCCCceeecCCCCChhhcCCCCc-
Q 046727 24 KFTKAVIRVRFPDNHTL-EVNFHPSETMQSLVDFLKRVLSQP--DLP-----FYLYTTPPKKIIKDVSQDFFSASFIPG- 94 (171)
Q Consensus 24 ~~~~~~IRIRfPDg~~l-q~~F~~~etl~~l~~~V~~~l~~~--~~~-----F~L~~~~P~k~l~d~~~tL~e~gl~P~- 94 (171)
......|+||..+|..+ ...|.+++|+.+|-+.|.+....+ ..| -.|... -|.+. ++.+|.+.++-..
T Consensus 13 ~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~--GK~Le-D~~TLsdy~I~~~~ 89 (126)
T 1se9_A 13 VHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA--GKVLE-NSKTVKDYRSPVSN 89 (126)
T ss_dssp SCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET--TEECC-TTSBGGGGSCCTTS
T ss_pred hcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEEC--CeECc-CCCcHHHcCCCcCC
Confidence 34678899999999877 699999999999999998766421 122 345433 35664 4679999887655
Q ss_pred -----eEEEEEeCCC
Q 046727 95 -----AIVYFSYDLP 104 (171)
Q Consensus 95 -----a~l~~~~~~~ 104 (171)
.++++..-..
T Consensus 90 ~~~~v~tmhlVlrl~ 104 (126)
T 1se9_A 90 LAGAVTTMHVIIQAP 104 (126)
T ss_dssp CTTCCEEEEEEECCC
T ss_pred ccCCcEEEEEEeccC
Confidence 6777776543
No 85
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=94.93 E-value=0.0044 Score=45.19 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred EEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCC
Q 046727 29 VIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDL 103 (171)
Q Consensus 29 ~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~ 103 (171)
.|.|+..+|..+...+.+++|+++|.+.|.+...-+.....|+. ..+.+.| +.+|.+.|+...++|++....
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~--~Gk~L~D-~~tL~~~~I~~gsti~l~~rl 73 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF--AGKQLED-GRTLSDYNIQKESTLHLVLRL 73 (128)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEE--CCEECCC-CCchhhhccCCCCEEEEEEEc
Confidence 46788899999999999999999999999886554434455543 3355654 689999999999999998764
No 86
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=94.87 E-value=0.23 Score=34.59 Aligned_cols=75 Identities=11% Similarity=0.133 Sum_probs=54.6
Q ss_pred CCeeEEEEEcCCCceEEE--EeCCCCchHHHHHHH-HHhcCCCCCCcEEEeCCCceeecCCCCChhhcCC-CCceEEEEE
Q 046727 25 FTKAVIRVRFPDNHTLEV--NFHPSETMQSLVDFL-KRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASF-IPGAIVYFS 100 (171)
Q Consensus 25 ~~~~~IRIRfPDg~~lq~--~F~~~etl~~l~~~V-~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl-~P~a~l~~~ 100 (171)
.....|-|+..+|..... .+.+++|+.+|-+.| .+.-.-+...-.|+.. .+.+.| +.+|.++|+ ..+..|++-
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~--Gk~L~D-~~tL~dy~I~~~g~ti~lm 93 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK--GKVLHD-NLFLSDLKVTPANSTITVM 93 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET--TEEECT-TCBGGGSCCBTTBCEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC--CEECcC-cCCHHHcCcCCCCCEEEEE
Confidence 356788899999975444 667999999999999 5443323334566643 366755 679999999 899999887
Q ss_pred eC
Q 046727 101 YD 102 (171)
Q Consensus 101 ~~ 102 (171)
..
T Consensus 94 vs 95 (98)
T 4a20_A 94 IK 95 (98)
T ss_dssp EC
T ss_pred Ee
Confidence 53
No 87
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=94.87 E-value=0.3 Score=35.06 Aligned_cols=76 Identities=8% Similarity=0.010 Sum_probs=57.6
Q ss_pred eeEEEEEcCCCc-eEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCC--Cce--eecCCCCChhhcCCCCceEEEEEe
Q 046727 27 KAVIRVRFPDNH-TLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTP--PKK--IIKDVSQDFFSASFIPGAIVYFSY 101 (171)
Q Consensus 27 ~~~IRIRfPDg~-~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~--P~k--~l~d~~~tL~e~gl~P~a~l~~~~ 101 (171)
.+.|.|+-..+. .++..|.++.|+++|...|.....-+...-.|.... ++. .+.+++++|.+.|+.+++.||+.-
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence 466777765553 689999999999999999999876665566665532 232 233567899999999999999985
Q ss_pred C
Q 046727 102 D 102 (171)
Q Consensus 102 ~ 102 (171)
-
T Consensus 86 ~ 86 (122)
T 1t0y_A 86 V 86 (122)
T ss_dssp C
T ss_pred C
Confidence 3
No 88
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=94.70 E-value=0.19 Score=42.13 Aligned_cols=74 Identities=12% Similarity=0.099 Sum_probs=59.6
Q ss_pred CCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEe
Q 046727 25 FTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSY 101 (171)
Q Consensus 25 ~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~ 101 (171)
.....|.||..+|..+...+.+++|+.+|.+.|.....-+...-.|+.. .+.+. ++.+|.++|+...+.|++..
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~--Gk~L~-D~~TLsdygI~~gstL~Lvl 304 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA--GKQLE-DGRTLSDYNIQKESTLHLVL 304 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET--TEECC-TTSBTGGGTCCTTCEEEEEC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeC--CeecC-CCCCHHHcCCCCCCEEEEEE
Confidence 3566788999999999999999999999999999877655445566543 45665 46899999999999998864
No 89
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=94.43 E-value=0.24 Score=36.14 Aligned_cols=74 Identities=9% Similarity=0.109 Sum_probs=54.1
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCC--------CCCcEEEeCCCceeecCCCCChhhcCCCCce--
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQP--------DLPFYLYTTPPKKIIKDVSQDFFSASFIPGA-- 95 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~--------~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a-- 95 (171)
....|+||..+|..+...|.+++|+++|-+.|.+....+ .....|... -|.+.| +.+|.++++-...
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~--GK~LeD-~~TL~~y~I~~~~~~ 92 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ--GRFLHG-NVTLGALKLPFGKTT 92 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESS--SSEEES-SCBTGGGCCCTTSEE
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEEC--CcCCCC-CCcHHHcCCCCCCce
Confidence 457888998999999999999999999999999854321 123455533 356754 5799999986544
Q ss_pred EEEEEeC
Q 046727 96 IVYFSYD 102 (171)
Q Consensus 96 ~l~~~~~ 102 (171)
+|++...
T Consensus 93 tlhlv~r 99 (125)
T 2gow_A 93 VMHLVAR 99 (125)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 5666654
No 90
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=94.42 E-value=0.55 Score=31.08 Aligned_cols=72 Identities=11% Similarity=0.211 Sum_probs=56.3
Q ss_pred CCeeEEEEEcCCCc-eEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEE
Q 046727 25 FTKAVIRVRFPDNH-TLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYF 99 (171)
Q Consensus 25 ~~~~~IRIRfPDg~-~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~ 99 (171)
-.+..|+|+-.||. .+.....++++++.|++...+...-+...+.|+.. -+.|. .+.|..++++--..+|.+
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fd--G~~l~-~~~Tp~~l~medgD~Idv 77 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFD--GTKLS-GKELPADLGLESGDLIEV 77 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEET--TEECC-SCCCHHHHTCCTTCEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC--CEEcC-CCCCHHHcCCCCCCEEEE
Confidence 35688999999996 89999999999999999999877655456666653 34454 357999999987777765
No 91
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=94.11 E-value=0.24 Score=33.70 Aligned_cols=71 Identities=11% Similarity=0.153 Sum_probs=53.3
Q ss_pred EEEEEcCCCceEEE--EeCCCCchHHHHHHH-HHhcCCCCCCcEEEeCCCceeecCCCCChhhcCC-CCceEEEEEeC
Q 046727 29 VIRVRFPDNHTLEV--NFHPSETMQSLVDFL-KRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASF-IPGAIVYFSYD 102 (171)
Q Consensus 29 ~IRIRfPDg~~lq~--~F~~~etl~~l~~~V-~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl-~P~a~l~~~~~ 102 (171)
.|-|+-.+|..+.. .+.+++|+.+|-+.| .....-+.....|+.. .+.+.| +.+|.++|+ -.++.|++...
T Consensus 3 qI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~--Gk~L~D-~~tL~~y~I~~~~stl~v~~~ 77 (87)
T 2lxa_A 3 HLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK--GKVLHD-NLFLSDLKVTPANSTITVMIK 77 (87)
T ss_dssp EEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEET--TEECCT-TCBHHHHCCCGGGCEEEEEEC
T ss_pred EEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEEC--CEECcC-cCCHHHcCCCCCCCEEEEEcC
Confidence 57788889975555 466999999999999 6554444456777653 366755 679999999 57899998864
No 92
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=94.07 E-value=0.42 Score=32.35 Aligned_cols=66 Identities=9% Similarity=-0.015 Sum_probs=49.0
Q ss_pred CCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEe-CC----CceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 36 DNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYT-TP----PKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 36 Dg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~-~~----P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
++...+.+|.+++|+++|-+.|.....-+...=.|.. .. ..+.+ +++.+|.+.|+..++.||+.-.
T Consensus 13 ~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l-~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 13 RMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNM-ANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp SCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSC-CTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEc-CCCCCHHHCCCCCCCEEEEEeC
Confidence 5567899999999999999999887665543444543 11 12323 5678999999999999999843
No 93
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=93.97 E-value=0.41 Score=34.76 Aligned_cols=72 Identities=18% Similarity=0.271 Sum_probs=55.5
Q ss_pred eEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCC-------ceEEEEE
Q 046727 28 AVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIP-------GAIVYFS 100 (171)
Q Consensus 28 ~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P-------~a~l~~~ 100 (171)
+-||||- ..+++.....+++|+.+|-..|.....-+...-.|+.. .+.+ ++++||.++|+.. .++|++.
T Consensus 3 vFl~Ikr-~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~--Gk~L-eD~kTL~dy~I~~~ta~~q~~atl~Lv 78 (118)
T 4ajy_B 3 VFLMIRR-HKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKD--DQLL-DDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp EEEEEEE-BTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET--TEEC-CTTSBTTTTTCCGGGSBTTBCEEEEEE
T ss_pred eEEEEec-CCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeC--CeEC-CCcCCHHHcCCCcCcccCCCCCEEEEE
Confidence 4566664 35678888899999999999999887655444567643 3667 4578999999999 9999999
Q ss_pred eCC
Q 046727 101 YDL 103 (171)
Q Consensus 101 ~~~ 103 (171)
+..
T Consensus 79 lr~ 81 (118)
T 4ajy_B 79 FRA 81 (118)
T ss_dssp ECC
T ss_pred Eec
Confidence 863
No 94
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.82 E-value=0.4 Score=33.57 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=53.0
Q ss_pred eEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCCC
Q 046727 28 AVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDLP 104 (171)
Q Consensus 28 ~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~~ 104 (171)
..++|++. |..+...+.+++|+++|...|.+.-.-+...=.|+.-++.+ +. ++.+|.++++-+.+.|++...+-
T Consensus 10 ~~~~vk~~-Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~-D~~tLs~~~I~~gstL~lvl~~~ 83 (100)
T 2dzm_A 10 LDFRVEYR-DRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VE-DSTVLKSLHLPKNNSLYVLTPDL 83 (100)
T ss_dssp EEEEEECS-SCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CC-TTSBHHHHCCCSEEEEEECCSSS
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CC-CcCCHHHcCCCCCCEEEEEecCC
Confidence 45778885 55567889999999999999987665332222243323445 54 46799999999999999976543
No 95
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=93.74 E-value=0.011 Score=44.67 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred EEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCCC
Q 046727 29 VIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDLP 104 (171)
Q Consensus 29 ~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~~ 104 (171)
.|.|+..+|..+...+.+++|+.+|-+.|.+...-+.....|+. ..+.|.| +.+|.++|+...++|++.....
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~--~Gk~L~D-~~tL~dygI~~gstL~Lvlrl~ 74 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF--AGKQLED-GRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE--CCEEccc-cCcHHHcCCCCCCEEEEEeecc
Confidence 47788999999999999999999999999886654433445543 3355654 6799999999999999987644
No 96
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=93.71 E-value=0.37 Score=40.53 Aligned_cols=76 Identities=8% Similarity=0.057 Sum_probs=54.5
Q ss_pred CCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCC-CCCcEEEeCCCc----ee--ecCCCCChhhcCCCCceEE
Q 046727 25 FTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQP-DLPFYLYTTPPK----KI--IKDVSQDFFSASFIPGAIV 97 (171)
Q Consensus 25 ~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~-~~~F~L~~~~P~----k~--l~d~~~tL~e~gl~P~a~l 97 (171)
.....++|+||||+.....+.++.|+++|.+.|...+.=. ..-|.|+..-+. .. .-+.++++.+-+.-+...+
T Consensus 83 ~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l 162 (371)
T 3ivf_A 83 KKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETL 162 (371)
T ss_dssp ECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEE
T ss_pred CceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceE
Confidence 3457889999999999999999999999999999987643 346889875431 11 1255667766555445567
Q ss_pred EEE
Q 046727 98 YFS 100 (171)
Q Consensus 98 ~~~ 100 (171)
+|+
T Consensus 163 ~fr 165 (371)
T 3ivf_A 163 LLR 165 (371)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 97
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=93.52 E-value=0.44 Score=33.01 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=59.5
Q ss_pred EEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 29 VIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 29 ~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
.|-|..|+|........|+.++.+|.+-.-+.+.-+...|.|.. -++.+ |.+..+.-.||..+|.|-+.-.
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh--~~k~l-DLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKF--QRTVL-DLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEE--TTEEE-SSSCBHHHHCCCSSCEEEEECS
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEe--CCEec-cccceeEecCCCCCCEEEEEEc
Confidence 46688999999999999999999998887777665556898874 45767 8889999999999999998753
No 98
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=93.23 E-value=0.6 Score=33.24 Aligned_cols=76 Identities=7% Similarity=0.015 Sum_probs=61.0
Q ss_pred CCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCC
Q 046727 25 FTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDL 103 (171)
Q Consensus 25 ~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~ 103 (171)
-....|+|+-.||..+.....++++++.|++...+...-+...+.|+.. -+.|. .+.|..++++--..+|.+....
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFd--G~~L~-~~~Tp~dl~mEDgD~Idv~~~q 99 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFD--GTPID-ETKTPEELGMEDDDVIDAMVEQ 99 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESS--SCBCC-SSSHHHHHHCSSEEEEEEECCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC--CEEcC-CCCCHHHcCCCCCCEEEEEEcc
Confidence 3568899999999999999999999999999999877655556666543 34454 3579999999999999998764
No 99
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=93.21 E-value=0.99 Score=31.91 Aligned_cols=75 Identities=8% Similarity=0.025 Sum_probs=59.3
Q ss_pred CCCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 24 KFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 24 ~~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
.-....|+|+- ||..+......+++++.|++...+...-+...+.|+.. -+.|. .+.|..++++--..+|.+...
T Consensus 28 ~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~Fd--G~rl~-~~~Tp~dl~medgD~Idv~~~ 102 (106)
T 2eke_C 28 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD--GIRIQ-ADQTPEDLDMEDNDIIEAHRE 102 (106)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET--TEECC-TTCCTTTTTCCTTEEEEEEEC
T ss_pred CCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEEC--CeEcC-CCCCHHHcCCCCCCEEEEEee
Confidence 34678899999 99999999999999999999998877654446666543 34454 457999999999999988765
No 100
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.84 E-value=0.72 Score=31.17 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=49.3
Q ss_pred eEEEEEcCCCceE--EE-EeCCCCchHHHHHHHHHhcC-CCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEE
Q 046727 28 AVIRVRFPDNHTL--EV-NFHPSETMQSLVDFLKRVLS-QPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFS 100 (171)
Q Consensus 28 ~~IRIRfPDg~~l--q~-~F~~~etl~~l~~~V~~~l~-~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~ 100 (171)
..|-|+-..|... .. ...+++|+.+|.+.|.+... -+...-.|...+-.+.+.| +.+|.+.|+...+.|+|.
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D-~~tL~~y~i~~~stl~~K 86 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKD-EDVLQKLPVGTTATLYFR 86 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCT-TCBTTTSSCCSEEEEEEC
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCC-CCCHHHcCCCCCCEEEEE
Confidence 4566665655432 45 78899999999999998432 1222334544443456744 689999999999998875
No 101
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=92.06 E-value=0.41 Score=39.22 Aligned_cols=77 Identities=14% Similarity=0.015 Sum_probs=52.7
Q ss_pred CCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCC-CCcEEEeCCC--ceeecCCCCChhhcCCCCceEEEEEe
Q 046727 25 FTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPD-LPFYLYTTPP--KKIIKDVSQDFFSASFIPGAIVYFSY 101 (171)
Q Consensus 25 ~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~-~~F~L~~~~P--~k~l~d~~~tL~e~gl~P~a~l~~~~ 101 (171)
.....++|.|+||+.+...+.+..|.++|.+.|.+.+.=.. .-|-|+..-+ ....-|.++.+.+-.--+...++|+-
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frv 94 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNV 94 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEE
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEE
Confidence 34678899999999999999999999999999999886433 3478865322 12233666677654323345677763
No 102
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=92.01 E-value=0.64 Score=38.04 Aligned_cols=76 Identities=16% Similarity=0.100 Sum_probs=52.2
Q ss_pred CCCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCC-CCcEEEeCC-CceeecCCCCChhhcCCC--CceEEEE
Q 046727 24 KFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPD-LPFYLYTTP-PKKIIKDVSQDFFSASFI--PGAIVYF 99 (171)
Q Consensus 24 ~~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~-~~F~L~~~~-P~k~l~d~~~tL~e~gl~--P~a~l~~ 99 (171)
......++|.|+|| .++..+.++.|+++|.+.|...|.=.. .-|-|+... .....-|.++.+.+.+.- +...++|
T Consensus 19 ~~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~f 97 (314)
T 1h4r_A 19 QPKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHF 97 (314)
T ss_dssp --CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEE
T ss_pred CCCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEE
Confidence 45678999999999 688999999999999999999886433 358887641 111222566677665422 3345666
Q ss_pred E
Q 046727 100 S 100 (171)
Q Consensus 100 ~ 100 (171)
+
T Consensus 98 r 98 (314)
T 1h4r_A 98 L 98 (314)
T ss_dssp E
T ss_pred E
Confidence 5
No 103
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=91.97 E-value=1.3 Score=35.25 Aligned_cols=67 Identities=10% Similarity=0.246 Sum_probs=53.4
Q ss_pred eEEEEeCCCCchHHHHHHHHHhcCCCC-CCcEEEeCC---CceeecCCCCChhhcCCCCceEEEEEeCCCC
Q 046727 39 TLEVNFHPSETMQSLVDFLKRVLSQPD-LPFYLYTTP---PKKIIKDVSQDFFSASFIPGAIVYFSYDLPK 105 (171)
Q Consensus 39 ~lq~~F~~~etl~~l~~~V~~~l~~~~-~~F~L~~~~---P~k~l~d~~~tL~e~gl~P~a~l~~~~~~~~ 105 (171)
.+...|...+|+++|++.|+..+.-+. ..+.|+.-. ....+.|.+.+|.+++|..+..|.+......
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~d 223 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNED 223 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTT
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCC
Confidence 466889999999999999999887544 478887743 2244557789999999999999999987543
No 104
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=91.67 E-value=0.83 Score=33.04 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=53.2
Q ss_pred EEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCC-------CceEEEEEe
Q 046727 29 VIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFI-------PGAIVYFSY 101 (171)
Q Consensus 29 ~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~-------P~a~l~~~~ 101 (171)
.|+||- ..+.+.....+++|+.+|-..|.....-+.....|+. -.+.+ +++++|.+.|+- ..++|++..
T Consensus 4 fl~ir~-~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~--~Gk~L-eD~~TLsdy~I~~~~a~~q~~stL~L~l 79 (118)
T 2fnj_B 4 FLMIRR-HKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYK--DDQLL-DDGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp EEEEEE-BTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE--TTEEC-CTTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred EEEEec-CCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEE--CCeEC-CCCCCHHHcCcccccccCCCCCEEEEEe
Confidence 455553 2256888899999999999999988765555677774 34667 456899999998 578888887
Q ss_pred C
Q 046727 102 D 102 (171)
Q Consensus 102 ~ 102 (171)
-
T Consensus 80 r 80 (118)
T 2fnj_B 80 R 80 (118)
T ss_dssp B
T ss_pred c
Confidence 5
No 105
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=91.48 E-value=0.91 Score=38.84 Aligned_cols=74 Identities=16% Similarity=0.158 Sum_probs=55.8
Q ss_pred eeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcC---CCCCCcEEEeCCCceeecCCCCChhhcCCCCceEE-EEEeC
Q 046727 27 KAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLS---QPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIV-YFSYD 102 (171)
Q Consensus 27 ~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~---~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l-~~~~~ 102 (171)
...|.||..+|..+...+.+++||.+|...|..... -+.....|+ +-.|.|.| +++|.++|+.....| ++...
T Consensus 7 ~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLi--y~GK~L~D-~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 7 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI--YAGKILSD-DVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEE--SSSSEECS-SSBTTTTCCCTTSCEEEEEEC
T ss_pred eEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEE--ECCeecCC-cCCHHHcCCCCCCEEEEEEec
Confidence 456889999999999999999999999999998542 122345555 44577765 679999999988877 55544
Q ss_pred C
Q 046727 103 L 103 (171)
Q Consensus 103 ~ 103 (171)
.
T Consensus 84 ~ 84 (368)
T 1oqy_A 84 T 84 (368)
T ss_dssp C
T ss_pred C
Confidence 3
No 106
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=91.43 E-value=1.1 Score=31.71 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=54.1
Q ss_pred hcCCC--eeEEEEEcCCC----ceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCC-CCc
Q 046727 22 KSKFT--KAVIRVRFPDN----HTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASF-IPG 94 (171)
Q Consensus 22 ~~~~~--~~~IRIRfPDg----~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl-~P~ 94 (171)
.+.|+ ...++|.|-|- ..+...+.+++|+++|-+.|.+...-+...=.|+ +..+.+ +++.+|.+.|+ -.+
T Consensus 15 ~~~~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli--~ggkll-~D~~TL~~ygI~~~G 91 (105)
T 4dbg_A 15 PEVSPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWV--IGQRLA-RDQETLHSHGVRQNG 91 (105)
T ss_dssp -----CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE--ETTEEE-CTTCBTGGGTCCSTT
T ss_pred CCcCCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEe--ccCeEc-cCcCcHHHcCCCCCC
Confidence 34455 67777777773 4788888899999999999998765443222344 345644 45789999999 488
Q ss_pred eEEEEEeC
Q 046727 95 AIVYFSYD 102 (171)
Q Consensus 95 a~l~~~~~ 102 (171)
..+++..-
T Consensus 92 ~t~hL~l~ 99 (105)
T 4dbg_A 92 DSAYLYLL 99 (105)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEE
Confidence 99888764
No 107
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=91.14 E-value=1.1 Score=35.16 Aligned_cols=68 Identities=12% Similarity=0.245 Sum_probs=52.8
Q ss_pred ceEEEEeCCCCchHHHHHHHHHhcCCCC-CCcEEEeCC-C--ceeecCCCCChhhcCCCCceEEEEEeCCCC
Q 046727 38 HTLEVNFHPSETMQSLVDFLKRVLSQPD-LPFYLYTTP-P--KKIIKDVSQDFFSASFIPGAIVYFSYDLPK 105 (171)
Q Consensus 38 ~~lq~~F~~~etl~~l~~~V~~~l~~~~-~~F~L~~~~-P--~k~l~d~~~tL~e~gl~P~a~l~~~~~~~~ 105 (171)
......|...+|+++|++.|+..+.-+. .++.|+.-. . ...+.+.++||.+++|..+..|.+......
T Consensus 140 ~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~d 211 (217)
T 4a3p_A 140 NVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNED 211 (217)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred cceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCC
Confidence 3567899999999999999999987543 478886532 1 233456688999999999999999987443
No 108
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=91.13 E-value=0.82 Score=36.92 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=50.3
Q ss_pred eEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCC-CCCcEEEeCCCc--eeecCCCCChhhcCCC--CceEEEEE
Q 046727 28 AVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQP-DLPFYLYTTPPK--KIIKDVSQDFFSASFI--PGAIVYFS 100 (171)
Q Consensus 28 ~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~-~~~F~L~~~~P~--k~l~d~~~tL~e~gl~--P~a~l~~~ 100 (171)
..|+|.|+|| .++..+.+..|.++|.+.|.+.+.=. ..-|.|+..-+. ...-|.++.+.+.+.. +...++|+
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 4689999999 57899999999999999999988643 335888763222 2223666777765432 33456666
No 109
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=90.15 E-value=1.1 Score=40.35 Aligned_cols=74 Identities=18% Similarity=0.143 Sum_probs=51.4
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCC-CCcEEEeCCCc--eeecCCCCChhhcCCC--CceEEEEE
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPD-LPFYLYTTPPK--KIIKDVSQDFFSASFI--PGAIVYFS 100 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~-~~F~L~~~~P~--k~l~d~~~tL~e~gl~--P~a~l~~~ 100 (171)
....|+|.|+|| .++..+.++.|+++|++.|...|.=.. .-|.|+..-+. ...-|.++.+.+.+.. +...++|.
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 467899999999 578999999999999999999886432 35888763322 2223566777665432 23456665
No 110
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=89.09 E-value=4.8 Score=28.83 Aligned_cols=75 Identities=8% Similarity=0.017 Sum_probs=59.1
Q ss_pred CCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeC
Q 046727 25 FTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYD 102 (171)
Q Consensus 25 ~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~ 102 (171)
-.+..|+|+-.||..++.....+.++..|++...+...-+...+.++.. -+.|.+ +.|..++++--..+|.+-.+
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFD--G~rI~~-~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE--GQRIAD-NHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEET--TEECCT-TCCTTTTTCCTTCEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEEC--CeECCC-CCCHHHcCCCCCCEEEEEee
Confidence 4788999999999999999999999999999998877655556766553 344643 57889999988888877654
No 111
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=88.49 E-value=1.2 Score=37.28 Aligned_cols=73 Identities=14% Similarity=0.126 Sum_probs=53.2
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeC-CCceeecCCCCChhhcCCCCceEEEEE
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTT-PPKKIIKDVSQDFFSASFIPGAIVYFS 100 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~-~P~k~l~d~~~tL~e~gl~P~a~l~~~ 100 (171)
....|.|++ .|......+.+++|+++|-+.|.+...-+...=.|... +..+.+.| +.+|.++|+.+++.|++.
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D-~~~L~~~~ik~g~~l~L~ 77 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAAD-NVKISALELKPNFKLMMV 77 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCT-TSBTTSSCCC--CEEEEE
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCc-cccHHHcCCCCCCEEEEE
Confidence 346788998 57788899999999999999998876544333345421 23355654 678999999999999987
No 112
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.56 E-value=2.2 Score=29.33 Aligned_cols=74 Identities=12% Similarity=0.217 Sum_probs=55.1
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCC-CceeecCCCCChhhcCCCCceEEEEEeCCC
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTP-PKKIIKDVSQDFFSASFIPGAIVYFSYDLP 104 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~-P~k~l~d~~~tL~e~gl~P~a~l~~~~~~~ 104 (171)
..+++.|.++-...-..+-+|.-++++|+-.|-+--.-....|.|.-.. ....+ |.+++|.|+|+. . .+.||..
T Consensus 9 ~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~L-dLskSLndlgir--E--Lya~d~~ 83 (91)
T 2daj_A 9 KTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPL-DLTKSLNDLGLR--E--LYAMDVN 83 (91)
T ss_dssp SCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBC-CTTSCHHHHTCS--E--EEEEECC
T ss_pred cEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCccc-chhcchhhhhhh--h--hheeccc
Confidence 4677888899888888899999999999999987554444567776543 33434 889999999994 3 4556643
No 113
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=87.32 E-value=1.7 Score=38.44 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=41.0
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCC--CCCcEEEeC
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQP--DLPFYLYTT 73 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~--~~~F~L~~~ 73 (171)
....++|.|+||+.....+.+..|.++|++.|...+.-. ..-|.|+..
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~ 264 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEY 264 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEE
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEE
Confidence 357889999999999999999999999999999988653 346889864
No 114
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=87.28 E-value=7.4 Score=30.47 Aligned_cols=78 Identities=8% Similarity=0.002 Sum_probs=61.8
Q ss_pred CCCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCC
Q 046727 24 KFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDL 103 (171)
Q Consensus 24 ~~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~ 103 (171)
.-.++.|+|+. ||..++.....++++..|.+...+...-+...+.+... .+.|. .+.|..++|+--..+|.+..+.
T Consensus 26 ~~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~Fd--G~rI~-~~~TP~dL~MEdgD~Idv~~~q 101 (200)
T 3pge_A 26 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD--GIRIQ-ADQTPEDLDMEDNDIIEAHREQ 101 (200)
T ss_dssp CCCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEET--TEECC-TTCCTTTTTCCTTEEEEEEECC
T ss_pred CCCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEEC--CEEcC-CCCCHHHcCCCCCCEEEEEecc
Confidence 45788999996 99999999999999999999998877655556666543 34564 3578899999999999998875
Q ss_pred CC
Q 046727 104 PK 105 (171)
Q Consensus 104 ~~ 105 (171)
--
T Consensus 102 ~g 103 (200)
T 3pge_A 102 IG 103 (200)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 115
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=86.02 E-value=2 Score=39.25 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=41.3
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCC-CCCCcEEEeC
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQ-PDLPFYLYTT 73 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~-~~~~F~L~~~ 73 (171)
....++|+|+||+.....+.+..|.++|.+.|...+.= +..-|.|+..
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~~ 310 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYIA 310 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEEE
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEEe
Confidence 36788999999999999999999999999999998863 3447999874
No 116
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=84.95 E-value=4.3 Score=33.87 Aligned_cols=72 Identities=17% Similarity=0.298 Sum_probs=56.5
Q ss_pred eEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCC----CCCCcEEEeCC--Cceee-cCCCCChhhcCCCCceEEEEE
Q 046727 28 AVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQ----PDLPFYLYTTP--PKKII-KDVSQDFFSASFIPGAIVYFS 100 (171)
Q Consensus 28 ~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~----~~~~F~L~~~~--P~k~l-~d~~~tL~e~gl~P~a~l~~~ 100 (171)
..++|+++ +.+=...|.++-|++++...|++.+.. +..+|-|+... |++-. -+.+++|...|+.....|.+.
T Consensus 4 ~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 4 LSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 56899999 888899999999999999999998864 34589999854 44322 245669999898887776664
No 117
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=84.89 E-value=4 Score=33.57 Aligned_cols=71 Identities=24% Similarity=0.260 Sum_probs=56.1
Q ss_pred cccccHHhHHHHHHHHhcCCCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCC-CCCCcEEEeCCCc
Q 046727 6 QVSIQKKIREAEEAARKSKFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQ-PDLPFYLYTTPPK 76 (171)
Q Consensus 6 ~~L~Tk~~Re~e~~~~~~~~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~-~~~~F~L~~~~P~ 76 (171)
..++..++|.+-++-+.+...+..|||-+.||+...+...++.|.++|.+.+..-... ....|.|+-..|.
T Consensus 10 ~~~k~~ki~~al~k~~~a~~~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~ 81 (281)
T 4gmv_A 10 AKLKAEKIRVALEKIKEAQVKKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSE 81 (281)
T ss_dssp ---CCTHHHHHHHHHHTTSSCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGG
T ss_pred HHHHHHHHHHHHHHHHhcCcccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCC
Confidence 3456667888777777888899999999999999999999999999999877654433 3457999887765
No 118
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=84.08 E-value=6.7 Score=30.92 Aligned_cols=77 Identities=8% Similarity=0.002 Sum_probs=59.3
Q ss_pred CCCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCC
Q 046727 24 KFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDL 103 (171)
Q Consensus 24 ~~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~ 103 (171)
.-.++.|+|+. ||..++.....+.++..|++...+...-+...+.+.. --+.|. .+.|..++++--..+|.+..+.
T Consensus 54 p~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF--DGqRI~-~ddTPeDLdMEDGDtIDV~leQ 129 (207)
T 3tix_A 54 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY--DGIEIQ-ADQTPEDLDMEDNDIIEAHREQ 129 (207)
T ss_dssp -CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE--TTEECC-SSCCTTTTTCCTTEEEEECCCC
T ss_pred CCCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE--CCeecC-CCCCHHHcCCCCCCEEEEEEec
Confidence 35678999985 9999999999999999999999887654444555544 234564 3678899999999999988764
Q ss_pred C
Q 046727 104 P 104 (171)
Q Consensus 104 ~ 104 (171)
-
T Consensus 130 ~ 130 (207)
T 3tix_A 130 I 130 (207)
T ss_dssp C
T ss_pred c
Confidence 3
No 119
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=81.91 E-value=0.66 Score=32.53 Aligned_cols=61 Identities=20% Similarity=0.433 Sum_probs=43.8
Q ss_pred eEEEEeCCCCchHHHHHHHHH----hcCCCCC-------CcEEEeCCCceeec-----CCCCChhhcCCCCceEEEEE
Q 046727 39 TLEVNFHPSETMQSLVDFLKR----VLSQPDL-------PFYLYTTPPKKIIK-----DVSQDFFSASFIPGAIVYFS 100 (171)
Q Consensus 39 ~lq~~F~~~etl~~l~~~V~~----~l~~~~~-------~F~L~~~~P~k~l~-----d~~~tL~e~gl~P~a~l~~~ 100 (171)
.+...|.++.||+++.+.+.+ .+..+.. .=.||...|.. |. +.+++|.|+|+..+..|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~-Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTS-IEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHH-HHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHH-HHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 345788999999999999987 2333433 44577754432 32 56789999999999988885
No 120
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=80.36 E-value=4.4 Score=28.35 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=47.6
Q ss_pred CCCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCC-CCCCcEEEeCCCc----eeecCCC
Q 046727 24 KFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQ-PDLPFYLYTTPPK----KIIKDVS 83 (171)
Q Consensus 24 ~~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~-~~~~F~L~~~~P~----k~l~d~~ 83 (171)
...+-.|||-+.||+...+-...+.|.++|.+.+..-..- ....|.|+-..|. +.|.|.+
T Consensus 6 ~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE 70 (100)
T 1wgr_A 6 SGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHE 70 (100)
T ss_dssp CCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSS
T ss_pred cCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCch
Confidence 4556799999999999999999999999999998765433 3568999986663 5565544
No 121
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=79.76 E-value=0.36 Score=37.75 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=0.0
Q ss_pred EEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEEEEEeCC
Q 046727 29 VIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIVYFSYDL 103 (171)
Q Consensus 29 ~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l~~~~~~ 103 (171)
.|-|+..+|..+.....+++||.+|-..|.....-+.....|+. --+.|.| +.+|. ..++|++....
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf--~GK~LeD-~~TLs-----~~STLhLvlRL 68 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVN--NGFIAPN-TELVT-----DDVTYYLSLKL 68 (189)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEe--cCeECCC-CCccc-----CCCEEEEEEec
Confidence 36788889999999999999999999999887654444556653 3366755 45665 56777777643
No 122
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=79.55 E-value=1 Score=37.10 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=36.1
Q ss_pred CCeeEEEEEcCCCceEEEEeCC--CCchHHHHHHHHHhcCCC-CCCcEEEeCCCc
Q 046727 25 FTKAVIRVRFPDNHTLEVNFHP--SETMQSLVDFLKRVLSQP-DLPFYLYTTPPK 76 (171)
Q Consensus 25 ~~~~~IRIRfPDg~~lq~~F~~--~etl~~l~~~V~~~l~~~-~~~F~L~~~~P~ 76 (171)
.++..|+|.|+||+.....|.+ +.|.++|.+.+. |... ..-|.|+..-|.
T Consensus 3 ~~~~~i~V~l~dg~~~~~~i~~~~~tt~~el~e~lg--L~~~~~~~FaL~~~~~~ 55 (322)
T 4dxa_B 3 PEFEKVRIYRMDGSYRSVELKHGNNTTVQQIMEGMR--LSQETQQYFTIWICSEN 55 (322)
T ss_dssp --CCEEEEECTTSCEEEEECTTGGGCCHHHHHTTSS--CCTTGGGGEEEEEECSS
T ss_pred CCceEEEEEEECCcEEEEEEcCCCCCcHHHHHHHhC--cCccccCeeEEEEECCc
Confidence 4577899999999999999999 999999965421 2221 235999885544
No 123
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=74.53 E-value=12 Score=27.29 Aligned_cols=55 Identities=16% Similarity=0.327 Sum_probs=40.4
Q ss_pred CchHHHHHHHHHhcCCCCCCcEEEeCCCceee-c----C-CCCChhhcCCCCceEEEEEeCC
Q 046727 48 ETMQSLVDFLKRVLSQPDLPFYLYTTPPKKII-K----D-VSQDFFSASFIPGAIVYFSYDL 103 (171)
Q Consensus 48 etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l-~----d-~~~tL~e~gl~P~a~l~~~~~~ 103 (171)
-|+++|.+.|+..+.-+. .|.++-+.-.+.| . | ..++|.++|+..+..|.+.-++
T Consensus 20 ~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DEd 80 (127)
T 3onh_A 20 MKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDEE 80 (127)
T ss_dssp CBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEESC
T ss_pred cCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEccc
Confidence 499999999988776443 7888743333343 3 2 3689999999999999999653
No 124
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=74.01 E-value=6.8 Score=27.33 Aligned_cols=39 Identities=23% Similarity=0.540 Sum_probs=33.6
Q ss_pred eeEEEEEcCCCceEEEEeC--CCCchHHHHHHHHHhcCCCC
Q 046727 27 KAVIRVRFPDNHTLEVNFH--PSETMQSLVDFLKRVLSQPD 65 (171)
Q Consensus 27 ~~~IRIRfPDg~~lq~~F~--~~etl~~l~~~V~~~l~~~~ 65 (171)
-.+|||+.|||--+.+.-+ +.=++.+|.+.|.+++.+..
T Consensus 14 ~lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT 54 (106)
T 2npt_A 14 VLVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEAT 54 (106)
T ss_dssp CEEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSC
T ss_pred ceEEEEECCCCCccccccCCcccccHHHHHHHHHHhCccce
Confidence 5689999999999999998 56788999999999998753
No 125
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=69.15 E-value=13 Score=29.26 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=40.8
Q ss_pred hcCCCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcC-CCCCCcEEEeCCC
Q 046727 22 KSKFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLS-QPDLPFYLYTTPP 75 (171)
Q Consensus 22 ~~~~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~-~~~~~F~L~~~~P 75 (171)
.+...+..|+|-++||+.-.+...++.|..+|.+.+..-.. .....|.|+...|
T Consensus 29 ea~~~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~E~~~ 83 (291)
T 3tca_A 29 EAKVKKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLYEIYP 83 (291)
T ss_dssp ---CCEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEEEEET
T ss_pred HhhccceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEEEecc
Confidence 34567788999999999999999999999999998776544 3345788876443
No 126
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=67.22 E-value=7.1 Score=32.80 Aligned_cols=44 Identities=5% Similarity=-0.040 Sum_probs=37.4
Q ss_pred EEEEEcCCCc----eEEEEeCCCCchHHHHHHHHHhcCCC-CCCcEEEe
Q 046727 29 VIRVRFPDNH----TLEVNFHPSETMQSLVDFLKRVLSQP-DLPFYLYT 72 (171)
Q Consensus 29 ~IRIRfPDg~----~lq~~F~~~etl~~l~~~V~~~l~~~-~~~F~L~~ 72 (171)
+++|.||||+ .....|.++.|+++|.+.|...+.=. ..-|.|+.
T Consensus 9 ~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~ 57 (375)
T 2al6_A 9 VFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRL 57 (375)
T ss_dssp EECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEE
T ss_pred eEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEE
Confidence 5688999998 99999999999999999999988643 23588876
No 127
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=59.98 E-value=37 Score=22.98 Aligned_cols=46 Identities=13% Similarity=0.271 Sum_probs=36.8
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCC-CCCcEEEe
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQP-DLPFYLYT 72 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~-~~~F~L~~ 72 (171)
....|++.|- |-++...+.++-++.+|++-|++.+.-. ..+|.|..
T Consensus 5 ~~vkvK~~~~-gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky 51 (89)
T 1vd2_A 5 SQVRVKAYYR-GDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKW 51 (89)
T ss_dssp SCEEEEEESS-SCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEE
T ss_pred CeEEEEEEeC-CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 3467888886 5688899999999999999999987743 46788864
No 128
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=58.79 E-value=44 Score=23.40 Aligned_cols=79 Identities=11% Similarity=0.087 Sum_probs=56.4
Q ss_pred CCCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEe---CCCceeecCCCCChhhcCCCCceEEEEE
Q 046727 24 KFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYT---TPPKKIIKDVSQDFFSASFIPGAIVYFS 100 (171)
Q Consensus 24 ~~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~---~~P~k~l~d~~~tL~e~gl~P~a~l~~~ 100 (171)
.-+++..||-.||.+.+...+..+.+.++|...|.+-+.-......|.. +.-+.+|.+.+.. .-..|-.+..|++-
T Consensus 6 ~sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~s-i~tsL~~NgRLfvc 84 (104)
T 1wgy_A 6 SGEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLV-ISKSLEASGRIYVY 84 (104)
T ss_dssp CSSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBS-SCCSSCSSCEEEEE
T ss_pred CCCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceE-EEeeccccceEEEe
Confidence 3467889999999999999999999999999999998864434677754 2344445433322 22345567888887
Q ss_pred eCC
Q 046727 101 YDL 103 (171)
Q Consensus 101 ~~~ 103 (171)
..+
T Consensus 85 ~kd 87 (104)
T 1wgy_A 85 RKD 87 (104)
T ss_dssp ECC
T ss_pred ehH
Confidence 654
No 129
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=50.00 E-value=58 Score=22.20 Aligned_cols=72 Identities=13% Similarity=0.212 Sum_probs=51.7
Q ss_pred cCCCeeEEEEEcCCCc-eEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEeCCCceeecCCCCChhhcCCCCceEE
Q 046727 23 SKFTKAVIRVRFPDNH-TLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYTTPPKKIIKDVSQDFFSASFIPGAIV 97 (171)
Q Consensus 23 ~~~~~~~IRIRfPDg~-~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~~~P~k~l~d~~~tL~e~gl~P~a~l 97 (171)
..-..+.|+|+-.||. .+..+...+.+++.|++.-.+...-....+.++.- -..|. .+.|-.++++--.-.|
T Consensus 21 ~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FD--G~rI~-~~~TP~dLdMEDgD~I 93 (97)
T 2jxx_A 21 ETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFD--GTKLS-GRELPADLGMESGDLI 93 (97)
T ss_dssp CSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEET--TEECC-SCSCHHHHTCCTTEEE
T ss_pred CCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEEC--CEEcC-CCCCHHHcCCCCCCEE
Confidence 3457788999999995 78888899999999999988876654456666543 23353 3467778887544444
No 130
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=49.87 E-value=64 Score=22.65 Aligned_cols=67 Identities=7% Similarity=0.186 Sum_probs=49.1
Q ss_pred CCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHh---------cCCCCCCcEEEe--C-CCceeecCCCCChhhcCCC
Q 046727 25 FTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRV---------LSQPDLPFYLYT--T-PPKKIIKDVSQDFFSASFI 92 (171)
Q Consensus 25 ~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~---------l~~~~~~F~L~~--~-~P~k~l~d~~~tL~e~gl~ 92 (171)
...+.|-+-+|+|..|+.....+.|+.++-+-|=+. |.+ ...|..+. . .-.-.+.|.++.|-|..++
T Consensus 17 ~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d-~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 17 PPRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQD-ESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp CSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCC-GGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred CCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCC-ccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 467889999999999999999999999997755443 222 23454433 2 3455577888999988876
No 131
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=46.31 E-value=79 Score=22.65 Aligned_cols=78 Identities=12% Similarity=0.125 Sum_probs=55.5
Q ss_pred CCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCC------CCcEEEe---CCCceeecCCCCChhhcCCCCce
Q 046727 25 FTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPD------LPFYLYT---TPPKKIIKDVSQDFFSASFIPGA 95 (171)
Q Consensus 25 ~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~------~~F~L~~---~~P~k~l~d~~~tL~e~gl~P~a 95 (171)
.+++..||-.||.+.+...+..+.+.++|...|.+-+.-.. .++.|.. +.-+.+|.+.+... -..|-.+.
T Consensus 7 ~Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv-~tsL~~Ng 85 (120)
T 2dhz_A 7 GDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCV-FTALGINS 85 (120)
T ss_dssp CCCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCH-HHHSCSSE
T ss_pred CCcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEE-Eeeccccc
Confidence 46888999999999999999999999999999999886432 2577754 33445555443332 22344478
Q ss_pred EEEEEeCC
Q 046727 96 IVYFSYDL 103 (171)
Q Consensus 96 ~l~~~~~~ 103 (171)
.|++-..+
T Consensus 86 RLfvc~kd 93 (120)
T 2dhz_A 86 HLFACTRD 93 (120)
T ss_dssp EEEEECTT
T ss_pred eEEEeehH
Confidence 88887653
No 132
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=45.54 E-value=33 Score=21.19 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=20.9
Q ss_pred EEEEEcCCCceEEEEeCCCCchHHHHHHH
Q 046727 29 VIRVRFPDNHTLEVNFHPSETMQSLVDFL 57 (171)
Q Consensus 29 ~IRIRfPDg~~lq~~F~~~etl~~l~~~V 57 (171)
.|.|.+|||.. ..|....|+.++...+
T Consensus 2 ~i~i~~p~g~~--~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 2 EVMVFTPKGEI--KRLPQGATALDFAYSL 28 (73)
T ss_dssp CEEEECTTCCE--EEECTTCBHHHHHHHH
T ss_pred eEEEEcCCCCE--EEcCCCCcHHHHHHHH
Confidence 37899999986 4567778888887666
No 133
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=45.52 E-value=67 Score=21.64 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=31.6
Q ss_pred eeEEEEE----cCCCceEEEEeCCCCchHHHHHHHHHhcCC-CCCCcEEEe
Q 046727 27 KAVIRVR----FPDNHTLEVNFHPSETMQSLVDFLKRVLSQ-PDLPFYLYT 72 (171)
Q Consensus 27 ~~~IRIR----fPDg~~lq~~F~~~etl~~l~~~V~~~l~~-~~~~F~L~~ 72 (171)
+++||++ .|+=..-......+.|++.+..+|+..|.- +...+.||.
T Consensus 5 Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyV 55 (91)
T 4gdk_A 5 KIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYV 55 (91)
T ss_dssp EEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEE
T ss_pred eEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 5666665 243333333445799999999999999864 456788886
No 134
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=45.30 E-value=66 Score=21.48 Aligned_cols=45 Identities=13% Similarity=0.125 Sum_probs=36.0
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEe
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYT 72 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~ 72 (171)
..++|+|+|- .++-+.-.+.-++++|++.|++-|.-....-.|..
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsY 48 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSY 48 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEE
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEe
Confidence 3489999998 57888899999999999999999976444444544
No 135
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=44.72 E-value=40 Score=23.29 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=28.0
Q ss_pred CCCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHH
Q 046727 24 KFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKR 59 (171)
Q Consensus 24 ~~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~ 59 (171)
+.....||+-|||+..-...-.+..|+.+.....-+
T Consensus 14 ~~~~~~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk 49 (95)
T 2l05_A 14 SPQKPIVRVFLPNKQRTVVPARCGVTVRDSLKKALM 49 (95)
T ss_dssp CCCSCEEEEEETTTEEEEEECCTTCBHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCeEEEEecCCcCHHHHHHHHHH
Confidence 445679999999998888888999998766555443
No 136
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=41.98 E-value=78 Score=21.38 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=28.3
Q ss_pred CeeEEEEEc-CCCceEEE---EeCCCCchHHHHHHHHHhcCCCCCCcEEEe
Q 046727 26 TKAVIRVRF-PDNHTLEV---NFHPSETMQSLVDFLKRVLSQPDLPFYLYT 72 (171)
Q Consensus 26 ~~~~IRIRf-PDg~~lq~---~F~~~etl~~l~~~V~~~l~~~~~~F~L~~ 72 (171)
.+++||++= -|--.|.- ....+.|++.+..+|+..|.- ..+.||.
T Consensus 7 ~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyV 55 (91)
T 3w1s_C 7 QKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYI 55 (91)
T ss_dssp CEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEE
T ss_pred CeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEE
Confidence 456666652 12123322 345799999999999999875 4677776
No 137
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=41.55 E-value=34 Score=22.21 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=20.8
Q ss_pred CCeeEEEEEcCCCceEEEEeCC-CCchHHHHHHH
Q 046727 25 FTKAVIRVRFPDNHTLEVNFHP-SETMQSLVDFL 57 (171)
Q Consensus 25 ~~~~~IRIRfPDg~~lq~~F~~-~etl~~l~~~V 57 (171)
.+...|+|.||||...+.. . ..|+.++..-+
T Consensus 7 ~~~~~i~I~lpdG~~~~~~--~~~~T~~dia~~i 38 (88)
T 1wwt_A 7 GDSKPIKVTLPDGKQVDAE--SWKTTPYQIACGI 38 (88)
T ss_dssp CSCCEEEEECTTSCEEEEE--TTTCCHHHHHHHS
T ss_pred CCCCCEEEEECCCCEEEcc--cCCCCHHHHHHHh
Confidence 4456799999999976544 3 46666655444
No 138
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=37.02 E-value=33 Score=29.14 Aligned_cols=46 Identities=11% Similarity=0.150 Sum_probs=35.6
Q ss_pred eeEEEEEc------CCCceEEEEeCCCCchHHHHHHHHH--hcC---CCCCCcEEEe
Q 046727 27 KAVIRVRF------PDNHTLEVNFHPSETMQSLVDFLKR--VLS---QPDLPFYLYT 72 (171)
Q Consensus 27 ~~~IRIRf------PDg~~lq~~F~~~etl~~l~~~V~~--~l~---~~~~~F~L~~ 72 (171)
.=.++|+| |||......|..+.|+++|...|.+ -++ ....-|.|+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~ 77 (392)
T 4eku_A 21 VRILKVCFYSNSFNPGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRL 77 (392)
T ss_dssp EEEEEEEECCSSSCGGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEE
T ss_pred eeeEEEEecccccCCCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEE
Confidence 44678888 9999999999999999999999974 332 1223588865
No 139
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=32.56 E-value=83 Score=21.26 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=26.9
Q ss_pred CeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHH
Q 046727 26 TKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKR 59 (171)
Q Consensus 26 ~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~ 59 (171)
..-.||+.|||+..-...-.+..|+.+.....-.
T Consensus 6 ~~~~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk 39 (86)
T 1wxm_A 6 SGGTVKVYLPNKQRTVVTVRDGMSVYDSLDKALK 39 (86)
T ss_dssp CSSEEEEECSSSCEEEEECCSSCBSHHHHHHHHH
T ss_pred ccceEEEECCCCCeEEEEecCCcCHHHHHHHHHH
Confidence 3448999999999888888999999766555444
No 140
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=30.99 E-value=76 Score=20.99 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=24.7
Q ss_pred EEEEEcCCCceEEEEeCCCCchHHHHHHHHH
Q 046727 29 VIRVRFPDNHTLEVNFHPSETMQSLVDFLKR 59 (171)
Q Consensus 29 ~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~ 59 (171)
.||+.|||+..-...-.+..|+.+-....-+
T Consensus 3 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk 33 (77)
T 1c1y_B 3 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALK 33 (77)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHH
T ss_pred eEEEECCCCceEEEEecCCcCHHHHHHHHHH
Confidence 6899999998888888999998765554433
No 141
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=30.46 E-value=1.3e+02 Score=20.43 Aligned_cols=46 Identities=24% Similarity=0.491 Sum_probs=31.4
Q ss_pred CCeeEEEEE----cCCCceEEEEeCCCCchHHHHHHHHHhcCCCCCCcEEEe
Q 046727 25 FTKAVIRVR----FPDNHTLEVNFHPSETMQSLVDFLKRVLSQPDLPFYLYT 72 (171)
Q Consensus 25 ~~~~~IRIR----fPDg~~lq~~F~~~etl~~l~~~V~~~l~~~~~~F~L~~ 72 (171)
..++.||++ .|+-..-...-..+.|++.+..+|+..|.-. .+.||.
T Consensus 11 ~~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~--alFlyv 60 (96)
T 1wz3_A 11 VQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD--SLFVYV 60 (96)
T ss_dssp -CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS--SCEEEE
T ss_pred CCeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEE
Confidence 456777776 3433333334457999999999999998754 677765
No 142
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=30.06 E-value=1.4e+02 Score=20.62 Aligned_cols=52 Identities=10% Similarity=0.188 Sum_probs=33.9
Q ss_pred hcCCCeeEEEEEcCCCc---eEE---EEeCCCCchHHHHHHHHHhcCC-CCCCcEEEeC
Q 046727 22 KSKFTKAVIRVRFPDNH---TLE---VNFHPSETMQSLVDFLKRVLSQ-PDLPFYLYTT 73 (171)
Q Consensus 22 ~~~~~~~~IRIRfPDg~---~lq---~~F~~~etl~~l~~~V~~~l~~-~~~~F~L~~~ 73 (171)
.+..+++.|.|.--.++ .|+ .....+.|++++..+|+..|.- +...+.|+..
T Consensus 22 ~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn 80 (110)
T 2r2q_A 22 KKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVN 80 (110)
T ss_dssp HHCTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBT
T ss_pred HhCCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence 34457788877644332 221 2344688999999999998853 4556777763
No 143
>3aqj_A GPV, baseplate assembly protein V; bacteriophage, tail spike, iron binding, beta-helix, infecti binding protein; 1.27A {Enterobacteria phage P2}
Probab=26.38 E-value=42 Score=24.07 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=16.0
Q ss_pred hcCCCeeEEEEEcCCCceEEEEeC
Q 046727 22 KSKFTKAVIRVRFPDNHTLEVNFH 45 (171)
Q Consensus 22 ~~~~~~~~IRIRfPDg~~lq~~F~ 45 (171)
...+..-..++|||||.+|+....
T Consensus 15 ~p~~s~~~~~~~f~DGa~ieYd~~ 38 (134)
T 3aqj_A 15 SPSVSADALHIRFPDGAVIEYEPE 38 (134)
T ss_dssp ---CBCSCEEEECTTSCEEEEETT
T ss_pred CCccCCCeeEEEeCCCCEEEEeCC
Confidence 345566677899999998776544
No 144
>4ac7_A Urease subunit gamma; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_A* 1ie7_A* 1ubp_A* 4ubp_A* 3ubp_A* 2ubp_A* 4ep8_A* 1a5l_A 1a5k_A 1a5n_A 1a5o_A 1ef2_C* 1ejr_A* 1ejs_A* 1ejt_A* 1eju_A* 1ejv_A* 1a5m_A* 1ejw_A* 1fwa_A* ...
Probab=26.35 E-value=52 Score=22.92 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=18.4
Q ss_pred CCCeeEEEEEcCCCceEEEEeCC
Q 046727 24 KFTKAVIRVRFPDNHTLEVNFHP 46 (171)
Q Consensus 24 ~~~~~~IRIRfPDg~~lq~~F~~ 46 (171)
-...+.|--.||||+.|....+|
T Consensus 76 ml~~vqVEatFpDGTkLVTVh~P 98 (100)
T 4ac7_A 76 MIDDIQAEATFPDGTKLVTVHNP 98 (100)
T ss_dssp HCSEEEEEEEETTEEEEEEEESC
T ss_pred hhhheeeEEEeCCCCEEEeecCC
Confidence 45677777789999999887765
No 145
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=25.86 E-value=43 Score=23.01 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=24.8
Q ss_pred cCCCeeEEEEEcCCCceEEEEeCCCCchH
Q 046727 23 SKFTKAVIRVRFPDNHTLEVNFHPSETMQ 51 (171)
Q Consensus 23 ~~~~~~~IRIRfPDg~~lq~~F~~~etl~ 51 (171)
.--....+||.+-||+.|.++....-|++
T Consensus 24 ~LdGq~~v~i~l~DGs~l~GTvavrPTiQ 52 (101)
T 2e12_A 24 LLDGQERVRIELDDGSMIAGTVAVRPTIQ 52 (101)
T ss_dssp TSCTTCEEEEEETTSCEEEEEESSCCCEE
T ss_pred hhCCeeEEEEEEcCCCeEeeeeccCchHH
Confidence 34567889999999999999999888876
No 146
>1mby_A SAK, serine/threonine kinase; POLO domain, strand exchange, transferase; 2.00A {Mus musculus} SCOP: d.223.1.1
Probab=25.66 E-value=48 Score=22.55 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=15.7
Q ss_pred CCCeeEEEEEcCCCceEEEE
Q 046727 24 KFTKAVIRVRFPDNHTLEVN 43 (171)
Q Consensus 24 ~~~~~~IRIRfPDg~~lq~~ 43 (171)
..+.-.|+|+|-||+.|...
T Consensus 19 QLs~G~V~VQf~DGS~L~~~ 38 (88)
T 1mby_A 19 QLTSGAVWVQFNDGSQLVMQ 38 (88)
T ss_dssp CSSEEEEEEEETTSCEEEEE
T ss_pred eecCccEEEEEcCCCEEEEe
Confidence 45667899999999977654
No 147
>2fvh_A Urease gamma subunit; protein: UREA homolog, structural genomics, PSI, protein STR initiative, TB structural genomics consortium; 1.80A {Mycobacterium tuberculosis}
Probab=25.51 E-value=52 Score=23.62 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=18.4
Q ss_pred CCCeeEEEEEcCCCceEEEEeCC
Q 046727 24 KFTKAVIRVRFPDNHTLEVNFHP 46 (171)
Q Consensus 24 ~~~~~~IRIRfPDg~~lq~~F~~ 46 (171)
-...+.|--.||||+.|....+|
T Consensus 96 mi~~VQVEatFpDGTKLVTVH~P 118 (120)
T 2fvh_A 96 MLAEVQVEATFPDGTKLVTVHQP 118 (120)
T ss_dssp HCSEEEEEEEETTEEEEEEEESS
T ss_pred hhcceeEEEEeCCCCEEEEecCC
Confidence 45677778889999999887765
No 148
>4fur_A Urease subunit gamma 2; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Brucella melitensis biovar abortus}
Probab=25.14 E-value=56 Score=22.89 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=18.3
Q ss_pred CCCeeEEEEEcCCCceEEEEeCC
Q 046727 24 KFTKAVIRVRFPDNHTLEVNFHP 46 (171)
Q Consensus 24 ~~~~~~IRIRfPDg~~lq~~F~~ 46 (171)
-...+.|---||||+.|....+|
T Consensus 80 mi~~vqVEatFpDGTkLVTVH~P 102 (104)
T 4fur_A 80 LLPLIQVEAVFSDGSRLVSLHNP 102 (104)
T ss_dssp HCSEEEEEEEETTEEEEEEEESC
T ss_pred HhcceeEEEEcCCCCEEEeecCC
Confidence 45667777789999999888775
No 149
>4ep8_A Urease subunit gamma; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_A 1a5k_A 1a5n_A 1a5o_A 1ef2_C* 1ejr_A* 1ejs_A* 1ejt_A* 1eju_A* 1ejv_A* 1a5m_A* 1ejw_A* 1fwa_A* 1fwb_A* 1fwc_A* 1fwd_A* 1fwe_A* 1fwf_A* 1fwg_A* 1fwh_A* ...
Probab=24.40 E-value=60 Score=22.60 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=18.1
Q ss_pred CCCeeEEEEEcCCCceEEEEeCC
Q 046727 24 KFTKAVIRVRFPDNHTLEVNFHP 46 (171)
Q Consensus 24 ~~~~~~IRIRfPDg~~lq~~F~~ 46 (171)
-...+.|---||||+.|....+|
T Consensus 76 mi~~vqVEatFpDGTkLVTVH~P 98 (100)
T 4ep8_A 76 MIPDIQVEATFPDGSKLVTVHNP 98 (100)
T ss_dssp HCSEEEEEEEETTEEEEEEEESC
T ss_pred HhccceEEEEcCCCCEEEeecCC
Confidence 45667777789999999887765
No 150
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=23.77 E-value=1.9e+02 Score=20.16 Aligned_cols=78 Identities=8% Similarity=0.181 Sum_probs=44.5
Q ss_pred hcCCCeeEEEEEcCCCc---eEE-E--EeCCCCchHHHHHHHHHhcCC-CCCCcEEEeCCCceeecCCCCCh---hhcCC
Q 046727 22 KSKFTKAVIRVRFPDNH---TLE-V--NFHPSETMQSLVDFLKRVLSQ-PDLPFYLYTTPPKKIIKDVSQDF---FSASF 91 (171)
Q Consensus 22 ~~~~~~~~IRIRfPDg~---~lq-~--~F~~~etl~~l~~~V~~~l~~-~~~~F~L~~~~P~k~l~d~~~tL---~e~gl 91 (171)
.+-.+++.|.|.-..++ .|+ . ....+.|++++..+|+..|.- +...+.|+..- .+...+.++ ++.--
T Consensus 23 ~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~---~~p~~~~~m~~LY~~~k 99 (117)
T 1eo6_A 23 AKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDK---TVPQSSLTMGQLYEKEK 99 (117)
T ss_dssp HHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTT---BCCCTTSBHHHHHHHHC
T ss_pred HHCCCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECC---EecCccchHHHHHHHhC
Confidence 34457888888744332 222 2 334678999999999998753 45567777632 233233333 33221
Q ss_pred CCceEEEEEeC
Q 046727 92 IPGAIVYFSYD 102 (171)
Q Consensus 92 ~P~a~l~~~~~ 102 (171)
-...-|++.+-
T Consensus 100 d~DGfLyi~Ys 110 (117)
T 1eo6_A 100 DEDGFLYVAYS 110 (117)
T ss_dssp CTTSCEEEEEE
T ss_pred CCCCEEEEEEe
Confidence 23455777764
No 151
>2k4q_A Major tail protein V; GPV, bacteriophage lambda, viral protein; NMR {Enterobacteria phage lambda}
Probab=23.40 E-value=79 Score=23.11 Aligned_cols=14 Identities=21% Similarity=0.627 Sum_probs=12.0
Q ss_pred CeeEEEEEcCCCce
Q 046727 26 TKAVIRVRFPDNHT 39 (171)
Q Consensus 26 ~~~~IRIRfPDg~~ 39 (171)
..+.+||.||||..
T Consensus 107 ~~~~~ki~~P~G~~ 120 (156)
T 2k4q_A 107 DTRAYKIRFPNGTV 120 (156)
T ss_dssp CCEEEEEECTTSCE
T ss_pred CeEEEEEEcCCCCE
Confidence 57789999999974
No 152
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=22.16 E-value=1.6e+02 Score=21.15 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=29.9
Q ss_pred eeEEEEEcCCCce-EEEEeCCCCchHHHHHHHHHhc
Q 046727 27 KAVIRVRFPDNHT-LEVNFHPSETMQSLVDFLKRVL 61 (171)
Q Consensus 27 ~~~IRIRfPDg~~-lq~~F~~~etl~~l~~~V~~~l 61 (171)
.+.|.|-+..+.. ++..|+....+.+||..+.+++
T Consensus 89 DaElki~isg~~~pi~~~f~k~~di~~i~k~La~~v 124 (126)
T 3hsa_A 89 DAELXLWISGQHEPLVXELXRGTDVVGIQXTIARYA 124 (126)
T ss_dssp EEEEEEEETTCSSCEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCceEEEEeccCcccHHHHHHHHHHHh
Confidence 5778888877665 9999999999999999998865
No 153
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=21.22 E-value=80 Score=28.14 Aligned_cols=44 Identities=5% Similarity=-0.001 Sum_probs=35.5
Q ss_pred EEEEEcCCCc----eEEEEeCCCCchHHHHHHHHHhcCCCC-CCcEEEe
Q 046727 29 VIRVRFPDNH----TLEVNFHPSETMQSLVDFLKRVLSQPD-LPFYLYT 72 (171)
Q Consensus 29 ~IRIRfPDg~----~lq~~F~~~etl~~l~~~V~~~l~~~~-~~F~L~~ 72 (171)
+++|-+|||. .....|....|+++|++.|-+.+.-.. .-|-|..
T Consensus 9 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~v~~~l~i~~~~~fgL~~ 57 (656)
T 2j0j_A 9 VFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRL 57 (656)
T ss_dssp EECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEE
T ss_pred heEEeccCCCCCCceeEEEeCCCCcHHHHHHHHHHhcCcceeeeEEEEE
Confidence 4567788987 999999999999999999999876422 2477865
No 154
>3qr7_A GPV, baseplate assembly protein V; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, tail spike, viral protein; 0.94A {Enterobacteria phage P2}
Probab=20.95 E-value=52 Score=22.99 Aligned_cols=16 Identities=31% Similarity=0.630 Sum_probs=12.6
Q ss_pred EEEcCCCceEEEEeCC
Q 046727 31 RVRFPDNHTLEVNFHP 46 (171)
Q Consensus 31 RIRfPDg~~lq~~F~~ 46 (171)
.++||||..++-....
T Consensus 5 ~~~f~DGa~~~Yd~~s 20 (115)
T 3qr7_A 5 HIRFPDGAVIEYEPET 20 (115)
T ss_dssp EEECTTSCEEEEETTT
T ss_pred EEEcCCCCEEEeCccC
Confidence 5789999988876654
No 155
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}
Probab=20.94 E-value=60 Score=26.39 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=29.0
Q ss_pred CCCeeEEEEEcCCCceEEEEeCCCCchHHHHHHHHHhcCC
Q 046727 24 KFTKAVIRVRFPDNHTLEVNFHPSETMQSLVDFLKRVLSQ 63 (171)
Q Consensus 24 ~~~~~~IRIRfPDg~~lq~~F~~~etl~~l~~~V~~~l~~ 63 (171)
.....-|||-+|++..+|..+.+.++-..|-+.++.++.+
T Consensus 196 ~~r~IPiRIy~~~~~~iQ~~i~~~~~~~TLg~~L~~~lp~ 235 (274)
T 3vqi_A 196 KAKSLPVRVWTSNYAVLQPTVPVTDKELSVAELLDSIKLS 235 (274)
T ss_dssp GCSBCCEEEECTTSCEECCCCBCC---CBHHHHHHTTTCC
T ss_pred cccceeEEEEcCCCCeEecccCCCCccccHHHHHHHhccc
Confidence 6788999999999999999999844334444556666653
No 156
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=20.65 E-value=2.4e+02 Score=20.17 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=32.1
Q ss_pred hcCCCeeEEEE-EcCCCc------eEEEEeCCCCchHHHHHHHHHhcCC-CCCCcEE-Ee
Q 046727 22 KSKFTKAVIRV-RFPDNH------TLEVNFHPSETMQSLVDFLKRVLSQ-PDLPFYL-YT 72 (171)
Q Consensus 22 ~~~~~~~~IRI-RfPDg~------~lq~~F~~~etl~~l~~~V~~~l~~-~~~~F~L-~~ 72 (171)
.+-.+++.|-| |.+... .-..-...+.|++.+..+|+..|.- +...+.| |.
T Consensus 30 ~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~v 89 (130)
T 2zjd_A 30 EQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVN 89 (130)
T ss_dssp HHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEET
T ss_pred HhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEE
Confidence 33446677777 444322 1222344688999999999998853 4557766 65
No 157
>3p34_A Serine/threonine-protein kinase PLK1; phosphoprotein binding domain, PLK1, kinase, transferase; HET: TPO; 1.40A {Homo sapiens} PDB: 3p2z_A* 3p2w_A* 3p35_A* 3p36_A* 3p37_A* 3q1i_A* 4e67_A* 4e9c_A* 4e9d_A* 2ogq_A 2ojs_A* 2ojx_A 3bzi_A* 3mhn_A* 3mhq_A 3mq8_B* 4h5x_B 4h70_B* 4h71_B* 4hco_B* ...
Probab=20.02 E-value=78 Score=25.09 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=13.6
Q ss_pred EEEEEcCCCceEEEEeCCCCc
Q 046727 29 VIRVRFPDNHTLEVNFHPSET 49 (171)
Q Consensus 29 ~IRIRfPDg~~lq~~F~~~et 49 (171)
.|=++|.||+ +|.+|..++|
T Consensus 158 Ailf~LSngt-vQVNF~~Dht 177 (232)
T 3p34_A 158 AIILHLSNGS-VQINFFQDHT 177 (232)
T ss_dssp EEEEEETTSC-EEEEETTTCC
T ss_pred EEEEEecCCC-EEEEEcCCCc
Confidence 3457888887 8888854443
Done!