BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046730
         (214 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
          Cys2his2 Zinc Finger Induces Structural Rearrangements
          Of Typical Dna Base Determinant Positions
 pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain
          From Arabidopsis Thaliana Superman Protein
          Length = 39

 Score = 38.5 bits (88), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 18/25 (72%)

Query: 68 RKYECQYCCREFANSQALGGHQNAH 92
          R Y C +C REF ++QALGGH N H
Sbjct: 5  RSYTCSFCKREFRSAQALGGHMNVH 29


>pdb|1SQD|A Chain A, Structural Basis For Inhibitor Selectivity Revealed By
          Crystal Structures Of Plant And Mammalian 4-
          Hydroxyphenylpyruvate Dioxygenases
 pdb|1TFZ|A Chain A, Structural Basis For Herbicidal Inhibitor Selectivity
          Revealed By Comparison Of Crystal Structures Of Plant
          And Mammalian 4- Hydroxyphenylpyruvate Dioxygenases
 pdb|1TG5|A Chain A, Crystal Structures Of Plant 4-Hydroxyphenylpyruvate
          Dioxygenases Complexed With Das645
          Length = 424

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 20 LKLFGFNISEDHNKNTDSFATSKTHLSDEALELETHISFQSNDNTNITRKYECQYCCREF 79
           KL GF+     N  +D F   + H          HI F   D TN+ R++      R  
Sbjct: 3  FKLVGFSKFVRKNPKSDKFKVKRFH----------HIEFWCGDATNVARRFSWGLGMRFS 52

Query: 80 ANS 82
          A S
Sbjct: 53 AKS 55


>pdb|1SP9|A Chain A, 4-hydroxyphenylpyruvate Dioxygenase
 pdb|1SP9|B Chain B, 4-hydroxyphenylpyruvate Dioxygenase
          Length = 445

 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 20 LKLFGFNISEDHNKNTDSFATSKTHLSDEALELETHISFQSNDNTNITRKYECQYCCREF 79
           KL GF+     N  +D F   + H          HI F   D TN+ R++      R  
Sbjct: 24 FKLVGFSKFVRKNPKSDKFKVKRFH----------HIEFWCGDATNVARRFSWGLGMRFS 73

Query: 80 ANS 82
          A S
Sbjct: 74 AKS 76


>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
          Protein Zfy: 2d Nmr Structure Of An Even Finger And
          Implications For "jumping-Linker" Dna Recognition
          Length = 30

 Score = 28.1 bits (61), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 70 YECQYCCREFANSQALGGH-QNAHKKER 96
          Y+CQYC + FA+S  L  H +  H KE+
Sbjct: 3  YQCQYCEKRFADSSNLKTHIKTKHSKEK 30


>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          199- 231) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 26.9 bits (58), Expect = 8.7,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 70 YECQYCCREFANSQALGGHQNAHKKER 96
          Y+C  C +EF+ S  L  HQ  H  E+
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39


>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          547- 579) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 26.6 bits (57), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 68 RKYECQYCCREFANSQALGGHQNAHKKER 96
          R YEC  C + F     L  HQ  H+ E+
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEK 39


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.130    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,745,190
Number of Sequences: 62578
Number of extensions: 262392
Number of successful extensions: 779
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 754
Number of HSP's gapped (non-prelim): 36
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)