BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046732
(516 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17QR8|HARB1_BOVIN Putative nuclease HARBI1 OS=Bos taurus GN=HARBI1 PE=2 SV=1
Length = 349
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 135/303 (44%), Gaps = 20/303 (6%)
Query: 167 LWVKDRSKAWWDECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVR 226
L + R D D +E + RQ + E L + +++ R P
Sbjct: 12 LLLYGRGHRTLDRFKLDDVTDEYLMSMYGFPRQFIYYLVELLGASLSRPTQRSRAISPET 71
Query: 227 QRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDA-LR 285
Q +A + + R+ G+ ++ + V V A+ +++ +P D+A ++
Sbjct: 72 QILAALGFYTSGSFQTRM-GDAIGISQASMSRCVANVTEALVE-RASQFIHFPADEASVQ 129
Query: 286 KIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNP 345
+KDEF ++GIP V+G + HV I AP +Y N+ K +S+ V +
Sbjct: 130 ALKDEFYGLAGIPGVIGVVDCMHVAIKAPNAEDLSYVNR-------KGLHSLNCLMVCDI 182
Query: 346 NGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQH 405
GA V WPGS+ D VL++S+L + G+ K W++G S + L W++ P H
Sbjct: 183 RGALMTVETSWPGSLQDCVVLQQSSLSSQFEAGMHKESWLLGDSSFFLRTWLMTPL---H 239
Query: 406 L--TWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPV----VLGACCVL 459
+ T ++ +N V + F L R+ CL ++ LQ P ++ ACCVL
Sbjct: 240 IPETPAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDG-SKGALQYSPEKSSHIILACCVL 298
Query: 460 HNI 462
HNI
Sbjct: 299 HNI 301
>sp|B0BN95|HARB1_RAT Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1
Length = 349
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 135/303 (44%), Gaps = 20/303 (6%)
Query: 167 LWVKDRSKAWWDECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVR 226
L + R D D +E + RQ + E L + +++ R P
Sbjct: 12 LLLYGRGHRTLDRFKLDDVTDEYLMSMYGFPRQFIYYLVELLGASLSRPTQRSRAISPET 71
Query: 227 QRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDA-LR 285
Q +A + +G + G+ ++ + V V A+ +++ +P D+A ++
Sbjct: 72 QILAA-LGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVER-ASQFIHFPADEAAIQ 129
Query: 286 KIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNP 345
+KDEF ++G+P V+G++ HV I AP +Y N+ K +S+ V +
Sbjct: 130 SLKDEFYGLAGMPGVIGAVDCIHVAIKAPNAEDLSYVNR-------KGLHSLNCLVVCDI 182
Query: 346 NGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQH 405
GA V WPGS+ D VL++S+L + G+ K W++G S + L W+L P H
Sbjct: 183 RGALMTVETSWPGSLQDCAVLQQSSLSSQFETGMPKDSWLLGDSSFFLHTWLLTPL---H 239
Query: 406 L--TWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPV----VLGACCVL 459
+ T ++ +N V + L R+ CL ++ LQ P ++ ACCVL
Sbjct: 240 IPETPAEYRYNRAHSATHSVIEKTLRTLCCRFRCLDG-SKGALQYSPEKSSHIILACCVL 298
Query: 460 HNI 462
HNI
Sbjct: 299 HNI 301
>sp|Q96MB7|HARB1_HUMAN Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1
Length = 349
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 135/303 (44%), Gaps = 20/303 (6%)
Query: 167 LWVKDRSKAWWDECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVR 226
L + R D D +E + RQ + E L + +++ T AI
Sbjct: 12 LLLYGRGHRTLDRFKLDDVTDEYLMSMYGFPRQFIYYLVELLGANLSRP-TQRSRAISPE 70
Query: 227 QRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDA-LR 285
+V + +G + G+ ++ + V V A+ +++++P D+A ++
Sbjct: 71 TQVLAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVER-ASQFIRFPADEASIQ 129
Query: 286 KIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNP 345
+KDEF ++G+P V+G + HV I AP +Y N+ K +S+ V +
Sbjct: 130 ALKDEFYGLAGMPGVMGVVDCIHVAIKAPNAEDLSYVNR-------KGLHSLNCLMVCDI 182
Query: 346 NGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQH 405
G V WPGS+ D VL++S+L + G+ K W++G S + L W++ P H
Sbjct: 183 RGTLMTVETNWPGSLQDCAVLQQSSLSSQFEAGMHKDSWLLGDSSFFLRTWLMTPL---H 239
Query: 406 L--TWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPV----VLGACCVL 459
+ T ++ +N V + F L R+ CL ++ LQ P ++ ACCVL
Sbjct: 240 IPETPAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDG-SKGALQYSPEKSSHIILACCVL 298
Query: 460 HNI 462
HNI
Sbjct: 299 HNI 301
>sp|Q8BR93|HARB1_MOUSE Putative nuclease HARBI1 OS=Mus musculus GN=Harbi1 PE=2 SV=1
Length = 349
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 131/301 (43%), Gaps = 16/301 (5%)
Query: 167 LWVKDRSKAWWDECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVR 226
L + R D D +E + RQ + E L + +++ R P
Sbjct: 12 LLLYGRGHRTLDRFKLDDVTDEYLMSMYGFPRQFIYFLVELLGASLSRPTQRSRAISPET 71
Query: 227 QRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWP-DDDALR 285
Q +A + +G + G+ ++ + V V A+ +++ +P D+ A++
Sbjct: 72 QILAA-LGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVE-RASQFIHFPVDEAAVQ 129
Query: 286 KIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNP 345
+KDEF ++G+P V+G HV I AP +Y N+ K +S+ V +
Sbjct: 130 SLKDEFYGLAGMPGVIGVADCIHVAIKAPNAEDLSYVNR-------KGLHSLNCLVVCDI 182
Query: 346 NGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQH 405
GA V WPGS+ D VL++S+L + G+ K W++G S + L W+L P
Sbjct: 183 RGALMTVETSWPGSLQDCAVLQRSSLTSQFETGMPKDSWLLGDSSFFLRSWLLTPLPIPE 242
Query: 406 LTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPV----VLGACCVLHN 461
T ++ +N V + L R+ CL ++ LQ P ++ ACCVLHN
Sbjct: 243 -TAAEYRYNRAHSATHSVIERTLQTLCCRFRCLDG-SKGALQYSPEKCSHIILACCVLHN 300
Query: 462 I 462
I
Sbjct: 301 I 301
>sp|Q6AZB8|HARB1_DANRE Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1
Length = 349
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 17/197 (8%)
Query: 273 PKYLQWPDDDALRK-IKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQ 331
P+++ + D+A ++ KDEF I+GIPNV G + H+ I AP ++Y NK
Sbjct: 116 PEFIGFTRDEATKQQFKDEFYRIAGIPNVTGVVDCAHIAIKAPNADDSSYVNK------- 168
Query: 332 KTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKS---ALYQRASGGLLKGVWIVGG 388
K +SI Q V + G WPGS+ D V ++S L++ W++G
Sbjct: 169 KGFHSINCQLVCDARGLLLSAETHWPGSLTDRAVFKQSNVAKLFEEQEND--DEGWLLGD 226
Query: 389 SGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCL---QKRTEVK 445
+ YPL W++ P Q + + +N + F ++ R+ CL + +
Sbjct: 227 NRYPLKKWLMTP-VQSPESPADYRYNLAHTTTHEIVDRTFRAIQTRFRCLDGAKGYLQYS 285
Query: 446 LQDLPVVLGACCVLHNI 462
+ ++ ACCVLHNI
Sbjct: 286 PEKCSHIIQACCVLHNI 302
>sp|Q5U538|HARB1_XENLA Putative nuclease HARBI1 OS=Xenopus laevis GN=harbi1 PE=2 SV=1
Length = 347
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 18/196 (9%)
Query: 274 KYLQWPDDD-ALRKIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQK 332
+++ +P D+ +++ +KDEF ++G+P V+G + T V I AP +Y N R
Sbjct: 117 QFISFPRDERSVQGLKDEFYNLAGVPGVLGVVDCTQVNIKAPNSEDLSYVNSRGL----- 171
Query: 333 TSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYP 392
+S+ V + G+ GSM D+ VL +S L + K W++ + +
Sbjct: 172 --HSLNCLLVCDARGSLLWAETSRLGSMQDNAVLHQSELSGLFETKMHKQGWLLADNAFI 229
Query: 393 LMDWVLVPY------TQQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKL 446
L W++ P + A + + QR + F L G LQ E
Sbjct: 230 LRPWLMTPVQIPESPSDYRYNMAHTATHSVMERTQRSLRLRFRCLDGSRATLQYSPEKSA 289
Query: 447 QDLPVVLGACCVLHNI 462
Q ++ ACC+LHNI
Sbjct: 290 Q----IVLACCILHNI 301
>sp|P54341|XKDV_BACSU Phage-like element PBSX protein XkdV OS=Bacillus subtilis (strain
168) GN=xkdV PE=4 SV=1
Length = 687
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 59 LNGIITSLLLLEEQEKGDQDAQKKASAEEKSFFEANHRNKKKTMLEYYSNIQD 111
+NG S + E +G Q+ KA A+ K++ E N+ N+K T+L + IQD
Sbjct: 400 VNGTDYSGWYILENSEGSQNKADKALADAKNYVETNYTNQKLTVLTGSNAIQD 452
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,078,702
Number of Sequences: 539616
Number of extensions: 9030167
Number of successful extensions: 47454
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 322
Number of HSP's that attempted gapping in prelim test: 43811
Number of HSP's gapped (non-prelim): 2290
length of query: 516
length of database: 191,569,459
effective HSP length: 122
effective length of query: 394
effective length of database: 125,736,307
effective search space: 49540104958
effective search space used: 49540104958
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)