Query 046732
Match_columns 516
No_of_seqs 274 out of 1668
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 06:20:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tc3_C Protein (TC3 transposas 93.2 0.026 8.8E-07 39.5 1.2 41 221-262 4-44 (51)
2 2p7v_B Sigma-70, RNA polymeras 92.0 0.079 2.7E-06 40.5 2.5 50 222-271 5-57 (68)
3 2w7n_A TRFB transcriptional re 91.0 0.088 3E-06 44.3 2.0 59 195-267 4-62 (101)
4 2glo_A Brinker CG9653-PA; prot 90.9 0.068 2.3E-06 39.9 1.1 43 220-263 3-49 (59)
5 1ku3_A Sigma factor SIGA; heli 90.2 0.15 5.2E-06 39.5 2.6 50 222-271 10-63 (73)
6 1tty_A Sigma-A, RNA polymerase 89.6 0.12 4E-06 41.7 1.6 50 222-271 18-70 (87)
7 2jn6_A Protein CGL2762, transp 89.6 0.13 4.4E-06 42.1 1.9 44 220-263 3-47 (97)
8 1wy3_A Villin; structural prot 89.5 0.18 6.1E-06 34.1 2.1 21 185-205 1-21 (35)
9 1jko_C HIN recombinase, DNA-in 89.0 0.09 3.1E-06 37.1 0.4 40 222-262 5-44 (52)
10 2o8x_A Probable RNA polymerase 88.6 0.22 7.4E-06 37.7 2.4 49 222-271 15-63 (70)
11 1und_A Advillin, P92; actin bi 88.4 0.23 7.8E-06 34.0 2.1 21 185-205 3-23 (37)
12 3hug_A RNA polymerase sigma fa 87.7 0.24 8.2E-06 40.1 2.3 49 222-271 37-85 (92)
13 1jhg_A Trp operon repressor; c 87.5 0.12 4.1E-06 43.5 0.3 43 222-265 35-83 (101)
14 3t72_q RNA polymerase sigma fa 85.0 0.4 1.4E-05 40.0 2.2 50 222-271 19-71 (99)
15 2elh_A CG11849-PA, LD40883P; s 82.8 0.42 1.5E-05 38.4 1.4 44 220-264 20-63 (87)
16 1u78_A TC3 transposase, transp 82.6 1.7 5.9E-05 37.1 5.4 79 184-262 22-102 (141)
17 1fse_A GERE; helix-turn-helix 81.5 0.7 2.4E-05 35.2 2.2 46 221-268 10-55 (74)
18 1rp3_A RNA polymerase sigma fa 80.6 0.74 2.5E-05 42.9 2.5 49 222-271 187-235 (239)
19 1hlv_A CENP-B, major centromer 80.5 0.59 2E-05 40.0 1.6 47 220-266 5-52 (131)
20 1iuf_A Centromere ABP1 protein 80.3 0.7 2.4E-05 40.9 2.1 48 218-265 7-62 (144)
21 3c57_A Two component transcrip 79.6 0.74 2.5E-05 37.6 1.9 46 222-269 27-72 (95)
22 1je8_A Nitrate/nitrite respons 79.5 0.34 1.1E-05 38.6 -0.3 46 221-268 20-65 (82)
23 1s7o_A Hypothetical UPF0122 pr 79.5 0.73 2.5E-05 39.2 1.9 49 222-271 22-70 (113)
24 1qzp_A Dematin; villin headpie 79.5 0.83 2.8E-05 35.5 2.0 21 185-205 34-54 (68)
25 1u78_A TC3 transposase, transp 78.7 0.69 2.4E-05 39.7 1.5 42 221-263 5-46 (141)
26 2jrt_A Uncharacterized protein 78.1 0.99 3.4E-05 37.4 2.2 44 220-263 30-73 (95)
27 1xsv_A Hypothetical UPF0122 pr 78.1 0.99 3.4E-05 38.3 2.3 49 222-271 25-73 (113)
28 1or7_A Sigma-24, RNA polymeras 77.1 1.1 3.8E-05 40.4 2.5 49 222-271 140-188 (194)
29 1yu8_X Villin; alpha helix, 3- 76.7 0.93 3.2E-05 35.1 1.5 21 185-205 33-53 (67)
30 2x48_A CAG38821; archeal virus 76.6 0.53 1.8E-05 34.0 0.1 26 236-261 28-53 (55)
31 1pdn_C Protein (PRD paired); p 76.2 0.97 3.3E-05 37.7 1.7 43 221-264 16-58 (128)
32 2k6m_S Supervillin; SVHP, HP, 75.0 0.94 3.2E-05 35.1 1.1 21 185-205 33-53 (67)
33 2q1z_A RPOE, ECF SIGE; ECF sig 74.9 1.5 5E-05 39.3 2.6 47 222-269 135-181 (184)
34 1x3u_A Transcriptional regulat 74.9 0.96 3.3E-05 35.0 1.2 43 223-267 17-59 (79)
35 1k78_A Paired box protein PAX5 74.8 1.1 3.6E-05 39.3 1.6 44 221-265 31-74 (149)
36 2jpc_A SSRB; DNA binding prote 74.5 0.83 2.8E-05 33.5 0.7 33 236-268 10-42 (61)
37 2lfw_A PHYR sigma-like domain; 74.5 1.6 5.3E-05 38.6 2.7 51 221-272 92-142 (157)
38 1j1v_A Chromosomal replication 74.5 1.4 4.7E-05 36.3 2.1 49 220-268 27-76 (94)
39 1p4w_A RCSB; solution structur 73.7 1.7 5.9E-05 35.9 2.5 61 201-268 18-78 (99)
40 2rnj_A Response regulator prot 72.9 1.1 3.8E-05 36.1 1.1 45 222-268 29-73 (91)
41 3mzy_A RNA polymerase sigma-H 71.7 1.5 5E-05 38.1 1.7 47 223-271 110-156 (164)
42 2rn7_A IS629 ORFA; helix, all 71.5 0.64 2.2E-05 38.6 -0.6 44 220-263 4-54 (108)
43 1ujs_A Actin-binding LIM prote 69.7 1.2 4.2E-05 36.3 0.7 22 185-206 48-69 (88)
44 3ulq_B Transcriptional regulat 68.6 2 6.7E-05 34.9 1.7 46 220-267 27-72 (90)
45 2k27_A Paired box protein PAX- 68.3 1.3 4.5E-05 39.2 0.7 42 221-263 24-65 (159)
46 1l0o_C Sigma factor; bergerat 64.9 1.3 4.6E-05 41.0 0.0 43 222-265 198-240 (243)
47 3pvv_A Chromosomal replication 62.4 3.4 0.00012 34.5 2.0 49 221-269 32-80 (101)
48 3frw_A Putative Trp repressor 57.6 2.8 9.4E-05 35.5 0.7 27 234-260 53-79 (107)
49 3ech_A MEXR, multidrug resista 57.0 7.5 0.00026 33.0 3.4 43 222-265 34-77 (142)
50 3kor_A Possible Trp repressor; 55.8 2.6 8.8E-05 36.3 0.2 33 227-260 64-96 (119)
51 1zyb_A Transcription regulator 54.9 6.6 0.00023 36.3 2.9 80 185-264 122-211 (232)
52 2a6h_F RNA polymerase sigma fa 54.0 5.5 0.00019 41.6 2.4 47 222-268 360-409 (423)
53 3iyd_F RNA polymerase sigma fa 53.7 5.9 0.0002 43.3 2.6 50 221-270 549-601 (613)
54 2d1h_A ST1889, 109AA long hypo 51.7 3.2 0.00011 33.4 0.1 28 237-264 34-61 (109)
55 1l9z_H Sigma factor SIGA; heli 51.6 4.6 0.00016 42.4 1.3 47 222-268 375-424 (438)
56 3dv8_A Transcriptional regulat 50.6 4.6 0.00016 36.7 1.0 103 185-288 106-218 (220)
57 4dyq_A Gene 1 protein; GP1, oc 50.6 4 0.00014 35.8 0.5 36 227-262 16-52 (140)
58 3r0a_A Putative transcriptiona 48.0 4.3 0.00015 34.6 0.3 38 228-265 30-68 (123)
59 1ku9_A Hypothetical protein MJ 47.7 4.3 0.00015 34.5 0.3 39 226-264 28-66 (152)
60 3uj3_X DNA-invertase; helix-tu 46.2 4.2 0.00014 37.2 0.0 34 229-262 148-181 (193)
61 2heo_A Z-DNA binding protein 1 46.1 5.4 0.00018 30.3 0.6 38 226-263 12-49 (67)
62 1zx4_A P1 PARB, plasmid partit 45.7 6.3 0.00022 36.7 1.1 40 223-262 8-47 (192)
63 3szt_A QCSR, quorum-sensing co 45.5 7.6 0.00026 36.8 1.7 45 220-266 173-217 (237)
64 3la7_A Global nitrogen regulat 45.0 3.7 0.00013 38.5 -0.6 81 185-265 123-219 (243)
65 3ukx_C Bimax2 peptide; arm rep 44.7 11 0.00037 23.1 1.6 16 9-24 4-19 (28)
66 2qvo_A Uncharacterized protein 44.6 4.8 0.00017 32.3 0.1 26 240-265 31-56 (95)
67 3n0r_A Response regulator; sig 43.7 13 0.00045 36.2 3.1 73 223-296 112-184 (286)
68 2x4h_A Hypothetical protein SS 43.6 6.2 0.00021 33.6 0.6 39 227-265 16-57 (139)
69 3clo_A Transcriptional regulat 43.6 8.5 0.00029 36.8 1.7 46 221-268 196-241 (258)
70 1pdn_C Protein (PRD paired); p 43.5 30 0.001 28.2 5.0 78 183-261 32-125 (128)
71 1oyi_A Double-stranded RNA-bin 42.7 5.7 0.00019 31.9 0.2 38 224-263 17-54 (82)
72 3fx3_A Cyclic nucleotide-bindi 42.7 5.8 0.0002 36.6 0.3 67 221-288 150-226 (237)
73 1y0u_A Arsenical resistance op 42.3 5.8 0.0002 31.8 0.3 28 237-264 41-68 (96)
74 2cob_A LCOR protein; MLR2, KIA 42.1 6.4 0.00022 30.6 0.4 40 222-261 12-52 (70)
75 2lkp_A Transcriptional regulat 41.9 13 0.00046 30.7 2.5 36 228-265 36-71 (119)
76 4aik_A Transcriptional regulat 41.3 7.7 0.00026 33.9 0.9 43 222-264 28-71 (151)
77 1qgp_A Protein (double strande 41.2 7.4 0.00025 30.5 0.7 38 226-263 16-55 (77)
78 2gxg_A 146AA long hypothetical 40.0 13 0.00045 31.3 2.2 40 223-264 35-75 (146)
79 2fbh_A Transcriptional regulat 39.8 10 0.00034 32.1 1.4 38 227-264 40-77 (146)
80 3ryp_A Catabolite gene activat 39.3 9.4 0.00032 34.3 1.2 43 222-264 137-192 (210)
81 1r1u_A CZRA, repressor protein 39.0 15 0.0005 30.0 2.3 37 227-265 29-65 (106)
82 2l1p_A DNA-binding protein SAT 39.0 6.6 0.00022 31.5 0.1 32 230-261 23-54 (83)
83 3tgn_A ADC operon repressor AD 38.8 30 0.001 29.0 4.4 42 221-264 34-76 (146)
84 2pg4_A Uncharacterized protein 38.5 11 0.00037 30.1 1.3 38 228-265 16-57 (95)
85 3d0s_A Transcriptional regulat 38.0 5 0.00017 36.8 -1.0 101 185-286 107-224 (227)
86 1sfx_A Conserved hypothetical 37.8 11 0.00038 29.9 1.3 37 228-265 24-60 (109)
87 1l3l_A Transcriptional activat 37.3 14 0.00048 34.6 2.1 47 220-268 171-217 (234)
88 3cuo_A Uncharacterized HTH-typ 37.2 7.2 0.00025 30.9 0.0 26 239-264 38-63 (99)
89 2q0o_A Probable transcriptiona 37.2 12 0.00041 35.2 1.6 47 220-268 173-219 (236)
90 3k0l_A Repressor protein; heli 37.0 16 0.00054 31.8 2.3 42 222-264 43-85 (162)
91 4ev0_A Transcription regulator 36.8 6.8 0.00023 35.4 -0.2 103 185-288 100-212 (216)
92 1uxc_A FRUR (1-57), fructose r 36.8 5.2 0.00018 30.4 -0.8 21 241-261 2-22 (65)
93 1on2_A Transcriptional regulat 36.8 8.6 0.00029 32.9 0.5 38 227-264 7-47 (142)
94 3bro_A Transcriptional regulat 36.4 10 0.00035 31.9 0.9 42 223-264 32-75 (141)
95 2oz6_A Virulence factor regula 36.2 11 0.00037 33.8 1.1 43 222-264 134-189 (207)
96 2nnn_A Probable transcriptiona 36.2 17 0.0006 30.2 2.4 43 222-265 35-78 (140)
97 1tbx_A ORF F-93, hypothetical 36.1 15 0.0005 29.3 1.8 38 227-265 11-52 (99)
98 2oa4_A SIR5; structure, struct 35.6 9.6 0.00033 31.8 0.6 37 227-263 38-74 (101)
99 2htj_A P fimbrial regulatory p 35.6 14 0.00046 28.7 1.4 27 238-264 13-39 (81)
100 3bpv_A Transcriptional regulat 35.1 14 0.0005 30.7 1.7 42 222-264 26-68 (138)
101 2kko_A Possible transcriptiona 35.0 9.8 0.00034 31.3 0.5 37 227-265 28-64 (108)
102 3e6c_C CPRK, cyclic nucleotide 35.0 5.4 0.00018 37.4 -1.3 66 222-288 146-226 (250)
103 3oop_A LIN2960 protein; protei 34.9 17 0.00057 30.7 2.0 42 222-264 34-76 (143)
104 3mky_B Protein SOPB; partition 34.9 11 0.00037 35.0 0.9 43 220-262 21-65 (189)
105 2fmy_A COOA, carbon monoxide o 34.8 8.5 0.00029 35.0 0.1 63 223-286 137-215 (220)
106 1qbj_A Protein (double-strande 34.8 13 0.00045 29.5 1.2 37 226-262 12-50 (81)
107 3boq_A Transcriptional regulat 34.7 12 0.00042 32.2 1.2 43 223-265 45-88 (160)
108 1r71_A Transcriptional repress 34.7 12 0.00041 34.3 1.1 41 220-260 33-73 (178)
109 3bja_A Transcriptional regulat 34.7 16 0.00053 30.5 1.8 43 222-265 30-73 (139)
110 2pex_A Transcriptional regulat 34.6 18 0.00062 30.9 2.2 42 222-264 44-86 (153)
111 2l8n_A Transcriptional repress 34.2 6 0.0002 30.2 -0.9 22 240-261 10-31 (67)
112 2dk5_A DNA-directed RNA polyme 34.1 13 0.00045 30.1 1.1 44 220-263 15-60 (91)
113 2zcw_A TTHA1359, transcription 34.0 14 0.00048 33.1 1.5 64 223-287 117-194 (202)
114 3fm5_A Transcriptional regulat 33.8 12 0.0004 32.1 0.9 42 223-264 37-79 (150)
115 3eco_A MEPR; mutlidrug efflux 33.8 9.7 0.00033 32.0 0.3 43 223-265 29-73 (139)
116 2oqg_A Possible transcriptiona 33.7 9.7 0.00033 31.1 0.3 36 227-264 24-59 (114)
117 3nrv_A Putative transcriptiona 33.6 16 0.00053 31.1 1.6 43 222-265 37-80 (148)
118 2l0k_A Stage III sporulation p 33.5 8.1 0.00028 31.6 -0.2 26 237-262 18-43 (93)
119 3iwz_A CAP-like, catabolite ac 33.3 14 0.00049 33.5 1.5 43 222-264 157-212 (230)
120 3g3z_A NMB1585, transcriptiona 33.3 16 0.00054 31.0 1.6 43 222-264 28-70 (145)
121 2bv6_A MGRA, HTH-type transcri 32.6 15 0.00052 30.9 1.4 42 223-265 35-77 (142)
122 3plo_X DNA-invertase; resolvas 32.5 9.4 0.00032 34.9 0.0 31 234-264 153-183 (193)
123 2hr3_A Probable transcriptiona 32.3 14 0.00047 31.3 1.0 44 222-265 32-76 (147)
124 3jw4_A Transcriptional regulat 32.3 17 0.0006 30.9 1.7 43 223-265 39-83 (148)
125 2fbi_A Probable transcriptiona 32.3 14 0.00047 31.0 1.0 42 223-265 34-76 (142)
126 1p6r_A Penicillinase repressor 31.9 9.5 0.00033 29.5 -0.1 38 225-263 10-51 (82)
127 2rdp_A Putative transcriptiona 31.8 18 0.0006 30.7 1.7 43 222-265 39-82 (150)
128 2fu4_A Ferric uptake regulatio 31.7 14 0.00048 28.6 0.9 26 239-264 33-63 (83)
129 1mkm_A ICLR transcriptional re 31.6 13 0.00044 35.4 0.8 43 223-265 4-49 (249)
130 3deu_A Transcriptional regulat 31.6 11 0.00038 33.2 0.4 43 222-264 50-93 (166)
131 2pij_A Prophage PFL 6 CRO; tra 31.6 8.1 0.00028 28.5 -0.5 24 236-260 11-34 (67)
132 3e97_A Transcriptional regulat 31.3 3 0.0001 38.4 -3.7 101 185-287 107-223 (231)
133 2jt1_A PEFI protein; solution 31.0 14 0.00048 29.0 0.8 24 239-262 24-47 (77)
134 1ft9_A Carbon monoxide oxidati 31.0 13 0.00044 33.9 0.7 43 223-265 133-189 (222)
135 1o5l_A Transcriptional regulat 30.9 10 0.00035 34.4 0.0 43 222-264 140-189 (213)
136 1k78_A Paired box protein PAX5 30.8 67 0.0023 27.4 5.4 79 183-262 47-141 (149)
137 2o0y_A Transcriptional regulat 30.8 15 0.0005 35.4 1.0 44 222-265 18-64 (260)
138 2a61_A Transcriptional regulat 30.8 17 0.00057 30.6 1.3 41 223-264 31-72 (145)
139 3cdh_A Transcriptional regulat 30.8 21 0.0007 30.6 1.9 41 223-264 41-82 (155)
140 3u2r_A Regulatory protein MARR 30.7 35 0.0012 29.7 3.5 42 223-264 44-87 (168)
141 3kp7_A Transcriptional regulat 30.5 19 0.00066 30.7 1.7 40 223-264 36-76 (151)
142 2g7u_A Transcriptional regulat 30.4 17 0.00058 34.8 1.4 44 222-265 9-55 (257)
143 1v4r_A Transcriptional repress 30.3 24 0.0008 28.5 2.1 22 241-262 37-58 (102)
144 3b02_A Transcriptional regulat 30.2 16 0.00054 32.6 1.1 65 222-287 109-187 (195)
145 3qp6_A CVIR transcriptional re 30.2 35 0.0012 32.8 3.7 45 221-267 196-240 (265)
146 3cjn_A Transcriptional regulat 30.1 16 0.00054 31.6 1.1 41 223-264 50-91 (162)
147 3bdd_A Regulatory protein MARR 30.1 18 0.00061 30.2 1.4 41 223-264 29-70 (142)
148 3jth_A Transcription activator 30.0 9.8 0.00034 30.4 -0.3 28 238-265 35-62 (98)
149 1fx7_A Iron-dependent represso 29.9 15 0.00051 34.5 0.9 41 224-264 6-49 (230)
150 4hbl_A Transcriptional regulat 29.9 16 0.00056 31.2 1.1 42 222-264 38-80 (149)
151 1lj9_A Transcriptional regulat 29.8 14 0.00048 31.1 0.7 41 223-264 27-68 (144)
152 3hot_A Transposable element ma 29.6 53 0.0018 32.1 5.0 169 188-367 30-220 (345)
153 1jgs_A Multiple antibiotic res 29.5 21 0.00072 29.7 1.8 43 222-265 31-74 (138)
154 2xrn_A HTH-type transcriptiona 29.4 14 0.00047 35.1 0.6 42 224-265 3-47 (241)
155 3bj6_A Transcriptional regulat 29.3 17 0.00057 31.0 1.1 41 223-264 38-79 (152)
156 2fa5_A Transcriptional regulat 29.2 20 0.0007 30.8 1.7 41 223-264 47-88 (162)
157 2fbk_A Transcriptional regulat 29.0 24 0.00081 31.4 2.1 43 223-265 67-112 (181)
158 2frh_A SARA, staphylococcal ac 29.0 14 0.00049 31.0 0.6 43 222-264 34-78 (127)
159 4b8x_A SCO5413, possible MARR- 28.9 27 0.00092 30.1 2.4 43 222-264 32-76 (147)
160 2gau_A Transcriptional regulat 28.8 25 0.00085 32.0 2.3 102 185-287 111-228 (232)
161 1z91_A Organic hydroperoxide r 28.7 16 0.00056 30.8 0.9 43 222-265 37-80 (147)
162 2qww_A Transcriptional regulat 28.6 17 0.0006 31.0 1.1 41 223-264 39-80 (154)
163 3hsr_A HTH-type transcriptiona 28.6 15 0.00051 31.1 0.6 42 222-264 33-75 (140)
164 3dkw_A DNR protein; CRP-FNR, H 28.5 16 0.00054 33.1 0.8 81 185-265 111-204 (227)
165 1q1h_A TFE, transcription fact 28.4 20 0.00068 29.3 1.3 26 239-264 33-58 (110)
166 2eth_A Transcriptional regulat 28.1 19 0.00064 31.0 1.2 43 222-265 41-84 (154)
167 2cyy_A Putative HTH-type trans 27.7 28 0.00095 30.2 2.3 27 238-264 20-46 (151)
168 2ia2_A Putative transcriptiona 27.7 16 0.00055 35.1 0.8 44 222-265 16-62 (265)
169 4ham_A LMO2241 protein; struct 27.5 28 0.00096 29.7 2.2 42 221-262 11-61 (134)
170 3kcc_A Catabolite gene activat 27.5 17 0.00057 34.3 0.8 43 222-264 187-242 (260)
171 3nqo_A MARR-family transcripti 27.2 16 0.00056 32.9 0.7 41 223-263 39-81 (189)
172 3f6o_A Probable transcriptiona 26.9 15 0.00052 30.6 0.3 36 227-264 21-56 (118)
173 1s3j_A YUSO protein; structura 26.6 16 0.00054 31.2 0.4 42 222-264 34-76 (155)
174 2jsc_A Transcriptional regulat 26.4 18 0.00062 30.2 0.7 28 237-264 32-59 (118)
175 1ub9_A Hypothetical protein PH 26.2 13 0.00045 29.3 -0.2 28 238-265 29-56 (100)
176 3s2w_A Transcriptional regulat 26.1 17 0.00059 31.4 0.6 38 227-265 53-90 (159)
177 1r1t_A Transcriptional repress 26.0 33 0.0011 28.8 2.4 28 238-265 58-85 (122)
178 1okr_A MECI, methicillin resis 25.5 13 0.00044 30.8 -0.4 42 223-265 8-54 (123)
179 2di3_A Bacterial regulatory pr 25.5 30 0.001 32.3 2.2 51 196-262 1-51 (239)
180 3r4k_A Transcriptional regulat 25.0 19 0.00066 34.5 0.7 42 224-265 3-47 (260)
181 3pqk_A Biofilm growth-associat 24.9 20 0.00069 28.8 0.7 28 238-265 35-62 (102)
182 2ek5_A Predicted transcription 24.9 22 0.00074 30.5 1.0 22 241-262 30-51 (129)
183 1neq_A DNA-binding protein NER 24.8 19 0.00065 27.8 0.5 24 237-260 20-43 (74)
184 2hzt_A Putative HTH-type trans 24.8 19 0.00065 29.5 0.5 28 237-264 25-53 (107)
185 2w25_A Probable transcriptiona 24.7 27 0.00091 30.2 1.6 26 238-263 20-45 (150)
186 2w48_A Sorbitol operon regulat 24.7 21 0.00073 35.1 1.0 34 230-263 12-45 (315)
187 3f6v_A Possible transcriptiona 24.6 17 0.00059 32.0 0.3 37 227-265 61-97 (151)
188 2cfx_A HTH-type transcriptiona 24.4 27 0.00094 30.0 1.6 26 238-263 18-43 (144)
189 3e6m_A MARR family transcripti 24.4 20 0.00068 31.1 0.6 41 223-264 51-92 (161)
190 2pn6_A ST1022, 150AA long hypo 24.3 30 0.001 29.8 1.8 26 239-264 17-42 (150)
191 2g9w_A Conserved hypothetical 24.3 18 0.00062 31.0 0.3 39 226-264 11-53 (138)
192 2p5k_A Arginine repressor; DNA 24.3 19 0.00064 26.1 0.4 35 227-261 5-46 (64)
193 2cw1_A SN4M; lambda CRO fold, 24.3 14 0.00046 28.2 -0.4 21 240-260 14-34 (65)
194 1zs4_A Regulatory protein CII; 24.3 19 0.00064 28.9 0.4 33 230-263 16-48 (83)
195 3f3x_A Transcriptional regulat 24.0 23 0.00079 29.8 1.0 25 241-265 52-76 (144)
196 2nyx_A Probable transcriptiona 24.0 22 0.00075 31.1 0.9 42 222-264 42-84 (168)
197 2fxa_A Protease production reg 23.8 30 0.001 31.8 1.8 42 222-264 45-87 (207)
198 1i1g_A Transcriptional regulat 23.8 27 0.00091 29.6 1.3 27 238-264 17-43 (141)
199 1pjn_A Histone-binding protein 23.6 21 0.00071 22.2 0.4 14 9-22 1-14 (26)
200 3fmy_A HTH-type transcriptiona 23.6 16 0.00054 27.7 -0.2 27 234-260 19-45 (73)
201 2bgc_A PRFA; bacterial infecti 23.5 19 0.00066 33.2 0.4 65 223-288 138-219 (238)
202 1u2w_A CADC repressor, cadmium 23.4 15 0.0005 31.0 -0.4 27 238-264 55-81 (122)
203 2dbb_A Putative HTH-type trans 23.0 34 0.0012 29.5 1.9 27 238-264 22-48 (151)
204 3ctp_A Periplasmic binding pro 22.8 18 0.00061 35.2 0.0 22 241-262 4-25 (330)
205 2xi8_A Putative transcription 22.8 12 0.00042 26.8 -0.9 25 236-260 11-35 (66)
206 2o20_A Catabolite control prot 22.6 18 0.00062 35.1 0.0 23 240-262 6-28 (332)
207 2cg4_A Regulatory protein ASNC 22.2 35 0.0012 29.5 1.9 27 238-264 21-47 (152)
208 3dn7_A Cyclic nucleotide bindi 22.2 19 0.00064 31.9 0.0 41 223-263 149-192 (194)
209 4fx0_A Probable transcriptiona 22.2 52 0.0018 28.3 2.9 42 223-264 31-77 (148)
210 3h5o_A Transcriptional regulat 22.0 19 0.00065 35.1 0.0 23 240-262 5-27 (339)
211 3bil_A Probable LACI-family tr 21.8 19 0.00066 35.4 0.0 22 241-262 10-31 (348)
212 2e1c_A Putative HTH-type trans 21.7 34 0.0012 30.6 1.7 26 238-263 40-65 (171)
213 3jvd_A Transcriptional regulat 21.6 20 0.00067 35.1 0.0 23 240-262 7-29 (333)
214 2p5v_A Transcriptional regulat 21.5 38 0.0013 29.6 1.9 27 238-264 23-49 (162)
215 2a6c_A Helix-turn-helix motif; 21.5 18 0.00062 27.9 -0.2 26 236-261 28-53 (83)
216 3mq0_A Transcriptional repress 21.4 15 0.00053 35.6 -0.8 44 222-265 25-71 (275)
217 1zug_A Phage 434 CRO protein; 21.4 16 0.00056 26.7 -0.5 25 236-260 13-37 (71)
218 3dbi_A Sugar-binding transcrip 21.3 20 0.00068 34.9 0.0 22 241-262 5-26 (338)
219 1r69_A Repressor protein CI; g 21.2 16 0.00056 26.5 -0.5 25 236-260 11-35 (69)
220 1vz0_A PARB, chromosome partit 21.2 28 0.00097 32.9 1.1 40 221-260 116-155 (230)
221 1jye_A Lactose operon represso 21.2 20 0.00069 35.2 0.0 22 241-262 5-26 (349)
222 3e3m_A Transcriptional regulat 20.8 21 0.00071 35.1 0.0 22 241-262 14-35 (355)
223 3qq6_A HTH-type transcriptiona 20.8 17 0.00059 27.8 -0.5 47 233-291 17-63 (78)
224 2b5a_A C.BCLI; helix-turn-heli 20.1 18 0.00062 26.9 -0.5 25 236-260 20-44 (77)
No 1
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=93.23 E-value=0.026 Score=39.47 Aligned_cols=41 Identities=10% Similarity=0.103 Sum_probs=32.4
Q ss_pred CCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhh
Q 046732 221 NAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLE 262 (516)
Q Consensus 221 ~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~ 262 (516)
..++.+++..+... +..|.++..+|..+|||.+||.+++..
T Consensus 4 ~~l~~~~~~~i~~~-~~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 4 SALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 46777777555544 468999999999999999999887654
No 2
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=91.98 E-value=0.079 Score=40.52 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=42.4
Q ss_pred CCCHhhHHHHHHhh-c--ccCCcchhhhhhcccccceeeehhhhhHHHHHhhc
Q 046732 222 AIPVRQRVAVCIWR-L--ATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVL 271 (516)
Q Consensus 222 ~l~~eekL~v~L~~-L--a~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L 271 (516)
.+|+.++-.+.|+| | ..|.++..+|..+|+|.+||...+.+....|...+
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~ 57 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 57 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 58999998888888 3 58999999999999999999998888777666543
No 3
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=91.04 E-value=0.088 Score=44.32 Aligned_cols=59 Identities=20% Similarity=0.324 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHhhccccccCCCCCCCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHH
Q 046732 195 RMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAI 267 (516)
Q Consensus 195 Rmsk~tF~~L~~~L~~~i~k~~t~~r~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL 267 (516)
|||.+.|+.++..++ ++ +..+-++-.||-.|.++..|+..+|+|+++|++++.+.-...
T Consensus 4 rmT~~eFe~~~~~l~-------------~~-~~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~ 62 (101)
T 2w7n_A 4 RLTESQFQEAIQGLE-------------VG-QQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAF 62 (101)
T ss_dssp CCCHHHHHHHHTTCC-------------CC-HHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHccCC-------------hH-HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 799999999876441 21 134556677889999999999999999999999988765543
No 4
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=90.88 E-value=0.068 Score=39.91 Aligned_cols=43 Identities=9% Similarity=0.144 Sum_probs=36.6
Q ss_pred CCCCCHhhHHHHHHhhcccCCc----chhhhhhcccccceeeehhhhh
Q 046732 220 RNAIPVRQRVAVCIWRLATGEP----LRLVSKRFGLGISTCHKLVLEV 263 (516)
Q Consensus 220 r~~l~~eekL~v~L~~La~G~s----~~~la~~Fgis~STvsrii~~v 263 (516)
+...+++.++.+ +.++..|.+ ...++..|||+.+|+.+.+...
T Consensus 3 r~~ys~efK~~~-~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 3 RRIFTPHFKLQV-LESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCCHHHHHHH-HHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCcCCHHHHHHH-HHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 457889999888 777888888 9999999999999998877553
No 5
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=90.19 E-value=0.15 Score=39.46 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=42.7
Q ss_pred CCCHhhHHHHHHhhc-c--cCCcchhhhhhcccccceeeehhhhhHHHHH-hhc
Q 046732 222 AIPVRQRVAVCIWRL-A--TGEPLRLVSKRFGLGISTCHKLVLEVCTAIR-SVL 271 (516)
Q Consensus 222 ~l~~eekL~v~L~~L-a--~G~s~~~la~~Fgis~STvsrii~~v~~aL~-~~L 271 (516)
.+|+.++-.+.|+|+ . .|.++..||..+|+|.+||...+.+....|. ..+
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~ 63 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHES 63 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHh
Confidence 589999988888874 3 7899999999999999999999888887776 533
No 6
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=89.59 E-value=0.12 Score=41.71 Aligned_cols=50 Identities=12% Similarity=0.188 Sum_probs=42.3
Q ss_pred CCCHhhHHHHHHhh-cc--cCCcchhhhhhcccccceeeehhhhhHHHHHhhc
Q 046732 222 AIPVRQRVAVCIWR-LA--TGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVL 271 (516)
Q Consensus 222 ~l~~eekL~v~L~~-La--~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L 271 (516)
.+|+.++-.+.|+| |. .|.++..||..+|+|.+||..++.+....|...+
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 47888998888887 45 7899999999999999999998888877766543
No 7
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=89.59 E-value=0.13 Score=42.11 Aligned_cols=44 Identities=9% Similarity=0.185 Sum_probs=37.3
Q ss_pred CCCCCHhhHHHHHHhhccc-CCcchhhhhhcccccceeeehhhhh
Q 046732 220 RNAIPVRQRVAVCIWRLAT-GEPLRLVSKRFGLGISTCHKLVLEV 263 (516)
Q Consensus 220 r~~l~~eekL~v~L~~La~-G~s~~~la~~Fgis~STvsrii~~v 263 (516)
+...+++.++.++-.++.. |.+...++..||||.+|+++++...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 3568889998888778877 9999999999999999998877554
No 8
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=89.46 E-value=0.18 Score=34.13 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.9
Q ss_pred CChhHHHHHcCCCHHHHHHHH
Q 046732 185 YPEEEFKKWFRMRRQTFDMIC 205 (516)
Q Consensus 185 ~~d~~Fk~~FRmsk~tF~~L~ 205 (516)
++|++|...|+|+++.|..|-
T Consensus 1 Lsd~dF~~vFgmsr~eF~~LP 21 (35)
T 1wy3_A 1 LSDEDFKAVFGMTRSAFANLP 21 (35)
T ss_dssp CCHHHHHHHHSSCHHHHHHSC
T ss_pred CCHHHHHHHHCCCHHHHHHCc
Confidence 579999999999999998874
No 9
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=88.98 E-value=0.09 Score=37.07 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=28.9
Q ss_pred CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhh
Q 046732 222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLE 262 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~ 262 (516)
.++.++.. .++..+..|.+...++..+|||.+||++++..
T Consensus 5 ~~~~~~~~-~i~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 5 AINKHEQE-QISRLLEKGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp SSCTTHHH-HHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCHHHHH-HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34444432 33334568899999999999999999887654
No 10
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=88.58 E-value=0.22 Score=37.70 Aligned_cols=49 Identities=16% Similarity=0.096 Sum_probs=40.0
Q ss_pred CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHhhc
Q 046732 222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVL 271 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L 271 (516)
.+|+.++-.+.|+| ..|.++..+|..+|+|.+||.+.+.+....|...+
T Consensus 15 ~L~~~~r~il~l~~-~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 15 DLTTDQREALLLTQ-LLGLSYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SSCHHHHHHHHHHH-TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred hCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 47888887777765 47899999999999999999999888877776644
No 11
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=88.39 E-value=0.23 Score=34.00 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.1
Q ss_pred CChhHHHHHcCCCHHHHHHHH
Q 046732 185 YPEEEFKKWFRMRRQTFDMIC 205 (516)
Q Consensus 185 ~~d~~Fk~~FRmsk~tF~~L~ 205 (516)
++|++|...|+|+++.|..|-
T Consensus 3 Lsd~dF~~vFgmsr~eF~~LP 23 (37)
T 1und_A 3 LSEQDFVSVFGITRGQFAALP 23 (37)
T ss_dssp CCHHHHHHHHSSCHHHHHHSC
T ss_pred CCHHHHHHHHCcCHHHHHHCh
Confidence 689999999999999998873
No 12
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=87.73 E-value=0.24 Score=40.14 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=40.6
Q ss_pred CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHhhc
Q 046732 222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVL 271 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L 271 (516)
.+|+.++-++.|+| ..|.++..||..+|+|.+||...+.+....|...|
T Consensus 37 ~L~~~~r~vl~l~~-~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSY-YRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHH-TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 47888888777765 48899999999999999999998888877776644
No 13
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=87.48 E-value=0.12 Score=43.47 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=32.8
Q ss_pred CCCHhhHHHHHHhh-----cccC-CcchhhhhhcccccceeeehhhhhHH
Q 046732 222 AIPVRQRVAVCIWR-----LATG-EPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 222 ~l~~eekL~v~L~~-----La~G-~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
-+++.++-++.++| |..| .+|+.|+...|+|.|||+|+ .+.+.
T Consensus 35 lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~ 83 (101)
T 1jhg_A 35 MLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLK 83 (101)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHH
Confidence 36777776666644 3367 99999999999999999998 55443
No 14
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=85.01 E-value=0.4 Score=40.01 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=42.9
Q ss_pred CCCHhhHHHHHHhhc---ccCCcchhhhhhcccccceeeehhhhhHHHHHhhc
Q 046732 222 AIPVRQRVAVCIWRL---ATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVL 271 (516)
Q Consensus 222 ~l~~eekL~v~L~~L---a~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L 271 (516)
.+|+.++-.+.|+|+ ..|.++..+|..+|+|.+||..+..+....|...+
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~ 71 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 71 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 478999999999885 37899999999999999999999888877776643
No 15
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=82.79 E-value=0.42 Score=38.43 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=34.5
Q ss_pred CCCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 220 RNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 220 r~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
+...+.+.+..+.-.+ ..|.+...++..||||.+|+++++.+.-
T Consensus 20 ~~~ys~e~k~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 20 LRSLTPRDKIHAIQRI-HDGESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp CSSCCHHHHHHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3567888876655444 6889999999999999999988876543
No 16
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=82.59 E-value=1.7 Score=37.09 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=52.7
Q ss_pred CCChhHHHHHcCCCHHHHHHHHHHhhccccccCCCCCCCCCHhhHHHHHHhhcccCCcchhhhhhcc--cccceeeehhh
Q 046732 184 DYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGEPLRLVSKRFG--LGISTCHKLVL 261 (516)
Q Consensus 184 ~~~d~~Fk~~FRmsk~tF~~L~~~L~~~i~k~~t~~r~~l~~eekL~v~L~~La~G~s~~~la~~Fg--is~STvsrii~ 261 (516)
.++-.+.-..|++++.|+...+......-.....+....+++++...+.-.....+.+...|+..+| +|.+||++++.
T Consensus 22 G~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~ 101 (141)
T 1u78_A 22 NVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIK 101 (141)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHH
Confidence 4677888899999999998887765442211122233457776654333222234478899999998 78889888876
Q ss_pred h
Q 046732 262 E 262 (516)
Q Consensus 262 ~ 262 (516)
+
T Consensus 102 ~ 102 (141)
T 1u78_A 102 R 102 (141)
T ss_dssp H
T ss_pred H
Confidence 5
No 17
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=81.51 E-value=0.7 Score=35.17 Aligned_cols=46 Identities=9% Similarity=0.140 Sum_probs=37.5
Q ss_pred CCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHH
Q 046732 221 NAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIR 268 (516)
Q Consensus 221 ~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~ 268 (516)
..+++.++-.+.+ +..|.++..+|..+|+|.+||...+......|.
T Consensus 10 ~~L~~~e~~il~~--~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFEL--LVQDKTTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 4688888866666 378999999999999999999988877665554
No 18
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=80.59 E-value=0.74 Score=42.88 Aligned_cols=49 Identities=18% Similarity=0.312 Sum_probs=42.6
Q ss_pred CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHhhc
Q 046732 222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVL 271 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L 271 (516)
.+|+.++-++.|+|+ .|.++..||..+|+|.+||...+.+....|...|
T Consensus 187 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 187 KLPEREKLVIQLIFY-EELPAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TSCHHHHHHHHHHHT-SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 488999999888875 6899999999999999999999888887776654
No 19
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=80.51 E-value=0.59 Score=40.01 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=38.8
Q ss_pred CCCCCHhhHHHHHHhhcccCCcch-hhhhhcccccceeeehhhhhHHH
Q 046732 220 RNAIPVRQRVAVCIWRLATGEPLR-LVSKRFGLGISTCHKLVLEVCTA 266 (516)
Q Consensus 220 r~~l~~eekL~v~L~~La~G~s~~-~la~~Fgis~STvsrii~~v~~a 266 (516)
+..++.+.++-++-.+..+|.+.. .++..|||+.+|+++++...-..
T Consensus 5 r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 5 RRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred ceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchhhh
Confidence 567999999988777667777765 99999999999999998875443
No 20
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=80.33 E-value=0.7 Score=40.85 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=39.3
Q ss_pred CCCCCCCHhhHHHHHHhh--cccCCcchhhhh----hc--ccccceeeehhhhhHH
Q 046732 218 TLRNAIPVRQRVAVCIWR--LATGEPLRLVSK----RF--GLGISTCHKLVLEVCT 265 (516)
Q Consensus 218 ~~r~~l~~eekL~v~L~~--La~G~s~~~la~----~F--gis~STvsrii~~v~~ 265 (516)
..|..++.++++.|+.++ -..+.+..+|+. .| +||+|||++++..=-.
T Consensus 7 ~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 7 IKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp CSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred CcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 347789999999999988 335568889999 99 9999999999876433
No 21
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=79.63 E-value=0.74 Score=37.60 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=38.7
Q ss_pred CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHh
Q 046732 222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRS 269 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~ 269 (516)
.++..++-++.|+ ..|.++..||..+|+|.+||...+.+....|..
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 5788888777774 899999999999999999999888877766654
No 22
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=79.52 E-value=0.34 Score=38.59 Aligned_cols=46 Identities=22% Similarity=0.393 Sum_probs=37.5
Q ss_pred CCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHH
Q 046732 221 NAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIR 268 (516)
Q Consensus 221 ~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~ 268 (516)
..++..++-.+.| +..|.++..||..+|+|.+||...+.+....|.
T Consensus 20 ~~Lt~~e~~vl~l--~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 20 NQLTPRERDILKL--IAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGSCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 3578888877777 379999999999999999999888877665544
No 23
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=79.52 E-value=0.73 Score=39.20 Aligned_cols=49 Identities=10% Similarity=0.119 Sum_probs=40.1
Q ss_pred CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHhhc
Q 046732 222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVL 271 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L 271 (516)
.+|+.++-++.|+| ..|.++..+|..+|+|.+||...+.+....|...+
T Consensus 22 ~L~~~~r~vl~l~y-~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYY-ADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHH-HTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 46777876666554 58899999999999999999999988887777654
No 24
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=79.50 E-value=0.83 Score=35.54 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=19.2
Q ss_pred CChhHHHHHcCCCHHHHHHHH
Q 046732 185 YPEEEFKKWFRMRRQTFDMIC 205 (516)
Q Consensus 185 ~~d~~Fk~~FRmsk~tF~~L~ 205 (516)
++|++|...|+|+++.|..|-
T Consensus 34 LsdedF~~vFgmsr~eF~~LP 54 (68)
T 1qzp_A 34 LSAEDFSRVFAMSPEEFGKLA 54 (68)
T ss_dssp BCHHHHHHHSSSCHHHHHHSC
T ss_pred CCHHHHHHHHCcCHHHHHHCh
Confidence 689999999999999999874
No 25
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=78.68 E-value=0.69 Score=39.66 Aligned_cols=42 Identities=10% Similarity=0.124 Sum_probs=34.3
Q ss_pred CCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhh
Q 046732 221 NAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEV 263 (516)
Q Consensus 221 ~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v 263 (516)
..++.+++..+...+ ..|.+...++..||+|.+||++++...
T Consensus 5 ~~~s~~~r~~i~~~~-~~G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 467888877665544 789999999999999999998887654
No 26
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=78.12 E-value=0.99 Score=37.35 Aligned_cols=44 Identities=14% Similarity=-0.023 Sum_probs=38.3
Q ss_pred CCCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhh
Q 046732 220 RNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEV 263 (516)
Q Consensus 220 r~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v 263 (516)
....+.+.++.|++..+..+.++.+++..|+|+.+++.++...+
T Consensus 30 ~rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 30 TRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp CCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 34578899999999999999999999999999999977666554
No 27
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=78.09 E-value=0.99 Score=38.26 Aligned_cols=49 Identities=8% Similarity=0.085 Sum_probs=40.3
Q ss_pred CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHhhc
Q 046732 222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVL 271 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L 271 (516)
.+|+.++-++.|+| ..|.++..+|..+|+|.+||...+.+....|...+
T Consensus 25 ~L~~~~r~vl~l~~-~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFY-LEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHH-TSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 46777877666654 58899999999999999999999988887777654
No 28
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=77.11 E-value=1.1 Score=40.39 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=41.8
Q ss_pred CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHhhc
Q 046732 222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVL 271 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L 271 (516)
.+|+.++-++.|+++ .|.++..||..+|+|.+||...+.+....|...|
T Consensus 140 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 140 SLPEDLRMAITLREL-DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp HSCHHHHHHHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHH-cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 368888888888765 7899999999999999999999988888777655
No 29
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=76.71 E-value=0.93 Score=35.13 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=19.1
Q ss_pred CChhHHHHHcCCCHHHHHHHH
Q 046732 185 YPEEEFKKWFRMRRQTFDMIC 205 (516)
Q Consensus 185 ~~d~~Fk~~FRmsk~tF~~L~ 205 (516)
++|++|...|+|+++.|..|-
T Consensus 33 LsdedF~~vFgms~~eF~~LP 53 (67)
T 1yu8_X 33 LSDEDFKAVFGMTRSAFANLP 53 (67)
T ss_dssp SCHHHHHHHHSSCHHHHHTSC
T ss_pred CCHHHHHHHHCcCHHHHHHCh
Confidence 689999999999999998774
No 30
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=76.56 E-value=0.53 Score=33.99 Aligned_cols=26 Identities=8% Similarity=0.235 Sum_probs=23.4
Q ss_pred cccCCcchhhhhhcccccceeeehhh
Q 046732 236 LATGEPLRLVSKRFGLGISTCHKLVL 261 (516)
Q Consensus 236 La~G~s~~~la~~Fgis~STvsrii~ 261 (516)
+..|.++..+|..+|+|.+||++++.
T Consensus 28 ~~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 28 AKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 57899999999999999999988764
No 31
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=76.21 E-value=0.97 Score=37.73 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=35.1
Q ss_pred CCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 221 NAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 221 ~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
..++.+.+..+...+ ..|.+...++..||||.+||++++....
T Consensus 16 ~~~s~~~r~~i~~~~-~~g~s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp SCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 467888887776554 5899999999999999999998887653
No 32
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=75.03 E-value=0.94 Score=35.10 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=18.9
Q ss_pred CChhHHHHHcCCCHHHHHHHH
Q 046732 185 YPEEEFKKWFRMRRQTFDMIC 205 (516)
Q Consensus 185 ~~d~~Fk~~FRmsk~tF~~L~ 205 (516)
++|++|...|+|+++.|..|-
T Consensus 33 LsdedF~~vFgmsr~eF~~LP 53 (67)
T 2k6m_S 33 LTDEDFEFALDMTRDEYNALP 53 (67)
T ss_dssp SCHHHHHHHTSSCHHHHTTSC
T ss_pred CCHHHHHHHHCcCHHHHHHCc
Confidence 689999999999999998763
No 33
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=74.91 E-value=1.5 Score=39.28 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=39.5
Q ss_pred CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHh
Q 046732 222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRS 269 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~ 269 (516)
.+|+.++-++.|+++ .|.++..||..+|+|.+||...+.+....|..
T Consensus 135 ~L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 135 RLPEAQRALIERAFF-GDLTHRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp TSCHHHHHHHHHHHH-SCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 378888888887665 78999999999999999998888887776654
No 34
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=74.86 E-value=0.96 Score=34.95 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=33.9
Q ss_pred CCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHH
Q 046732 223 IPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAI 267 (516)
Q Consensus 223 l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL 267 (516)
+|+.++-.+.| + ..|.++..+|..+|+|.+||...+.+....|
T Consensus 17 L~~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERERQVLSA-V-VAGLPNKSIAYDLDISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHHHHHHH-H-TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 46666666666 3 7999999999999999999988777665544
No 35
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=74.77 E-value=1.1 Score=39.27 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=36.7
Q ss_pred CCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732 221 NAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 221 ~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
..++.+.+..+...+ ..|.+...+|..||||.+||++++.....
T Consensus 31 ~~~s~e~r~~iv~~~-~~G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 31 RPLPDVVRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp SCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468888887776665 58999999999999999999998877643
No 36
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=74.53 E-value=0.83 Score=33.53 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=28.1
Q ss_pred cccCCcchhhhhhcccccceeeehhhhhHHHHH
Q 046732 236 LATGEPLRLVSKRFGLGISTCHKLVLEVCTAIR 268 (516)
Q Consensus 236 La~G~s~~~la~~Fgis~STvsrii~~v~~aL~ 268 (516)
+..|.++..+|..+|+|.+||...+.....-|.
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 689999999999999999999888877665443
No 37
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=74.53 E-value=1.6 Score=38.64 Aligned_cols=51 Identities=16% Similarity=0.083 Sum_probs=42.6
Q ss_pred CCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHhhcc
Q 046732 221 NAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLM 272 (516)
Q Consensus 221 ~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L~ 272 (516)
..+|+.++-++.|+++ .|.++..||...|+|.+||...+.+....|...|.
T Consensus 92 ~~Lp~~~r~vl~L~~~-~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~ 142 (157)
T 2lfw_A 92 ARMTPLSRQALLLTAM-EGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTR 142 (157)
T ss_dssp TTSCTTHHHHHTTTSS-SCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HhCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3588888887777554 68999999999999999999999888888877654
No 38
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=74.50 E-value=1.4 Score=36.33 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=40.7
Q ss_pred CCCCCHhhHHHHHHhhcccCCcchhhhhhc-ccccceeeehhhhhHHHHH
Q 046732 220 RNAIPVRQRVAVCIWRLATGEPLRLVSKRF-GLGISTCHKLVLEVCTAIR 268 (516)
Q Consensus 220 r~~l~~eekL~v~L~~La~G~s~~~la~~F-gis~STvsrii~~v~~aL~ 268 (516)
...+...-+++|.|.+--+|.++..+|..| |.+.|||...+..+-..+.
T Consensus 27 ~~~i~~aRqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~ 76 (94)
T 1j1v_A 27 SRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLRE 76 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 346777788999888888999999999999 8999999888777766553
No 39
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=73.67 E-value=1.7 Score=35.94 Aligned_cols=61 Identities=10% Similarity=0.113 Sum_probs=43.9
Q ss_pred HHHHHHHhhccccccCCCCCCCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHH
Q 046732 201 FDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIR 268 (516)
Q Consensus 201 F~~L~~~L~~~i~k~~t~~r~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~ 268 (516)
...++..|.+. . .....+++.++-.+.| +..|.++..||...|+|.+||...+..+...|.
T Consensus 18 ~~~~l~~l~~~----~-~~~~~Lt~re~~Vl~l--~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 18 VAKLLEKISAG----G-YGDKRLSPKESEVLRL--FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp HHHHHHHHHCC----C-CSSSSCCHHHHHHHHH--HHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHccC----C-cccCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 34555655542 1 1145789888866655 469999999999999999999888877665543
No 40
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=72.86 E-value=1.1 Score=36.07 Aligned_cols=45 Identities=13% Similarity=0.190 Sum_probs=36.1
Q ss_pred CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHH
Q 046732 222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIR 268 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~ 268 (516)
.+++.++-.+.| +..|.++..||..+|+|.+||...+.+....|.
T Consensus 29 ~Lt~~e~~vl~l--~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 29 MLTEREMEILLL--IAKGYSNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GCCSHHHHHHHH--HHTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 477778777766 379999999999999999999888776655443
No 41
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=71.68 E-value=1.5 Score=38.09 Aligned_cols=47 Identities=6% Similarity=0.151 Sum_probs=38.4
Q ss_pred CCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHhhc
Q 046732 223 IPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVL 271 (516)
Q Consensus 223 l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L 271 (516)
+|+.++-++. + +-.|.++..||..+|+|.+||...+.+....|...|
T Consensus 110 L~~~~r~v~~-~-~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 110 FSKFEKEVLT-Y-LIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp SCHHHHHHHH-H-HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-H-HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 6777777666 3 458999999999999999999998888877776644
No 42
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=71.50 E-value=0.64 Score=38.56 Aligned_cols=44 Identities=11% Similarity=0.064 Sum_probs=35.7
Q ss_pred CCCCCHhhHHHHHHhhcccC-------Ccchhhhhhcccccceeeehhhhh
Q 046732 220 RNAIPVRQRVAVCIWRLATG-------EPLRLVSKRFGLGISTCHKLVLEV 263 (516)
Q Consensus 220 r~~l~~eekL~v~L~~La~G-------~s~~~la~~Fgis~STvsrii~~v 263 (516)
+...+++.++.++..++..| .++..++..||||.+|+++++...
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHH
Confidence 34678899988887777665 799999999999999988776553
No 43
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=69.70 E-value=1.2 Score=36.26 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.6
Q ss_pred CChhHHHHHcCCCHHHHHHHHH
Q 046732 185 YPEEEFKKWFRMRRQTFDMICE 206 (516)
Q Consensus 185 ~~d~~Fk~~FRmsk~tF~~L~~ 206 (516)
++|++|...|+|+++.|..|-.
T Consensus 48 LSdedF~~vFgMsr~eF~~LP~ 69 (88)
T 1ujs_A 48 LSQEEFYQVFGMTISEFDRLAL 69 (88)
T ss_dssp SCTTHHHHHHSSCHHHHTTSCH
T ss_pred CCHHHHHHHHCcCHHHHHHChH
Confidence 6899999999999999987743
No 44
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=68.63 E-value=2 Score=34.85 Aligned_cols=46 Identities=7% Similarity=0.122 Sum_probs=35.1
Q ss_pred CCCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHH
Q 046732 220 RNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAI 267 (516)
Q Consensus 220 r~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL 267 (516)
...++..++-.+.| ++.|.++..||..+|||.+||...+.++..-|
T Consensus 27 ~~~Lt~rE~~Vl~l--~~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQE--VEKGFTNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHH--HHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 34678877765554 44999999999999999999988877765443
No 45
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=68.35 E-value=1.3 Score=39.20 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=34.4
Q ss_pred CCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhh
Q 046732 221 NAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEV 263 (516)
Q Consensus 221 ~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v 263 (516)
..++.+.+..+...+ ..|.+...++..||||.+||++++...
T Consensus 24 ~~~s~e~r~~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~r~ 65 (159)
T 2k27_A 24 RPLPEVVRQRIVDLA-HQGVRPCDISRQLRVSHGCVSKILGRY 65 (159)
T ss_dssp CSSCHHHHHHHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHCCS
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 467888887766554 689999999999999999998887654
No 46
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=64.88 E-value=1.3 Score=41.01 Aligned_cols=43 Identities=16% Similarity=0.270 Sum_probs=0.0
Q ss_pred CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732 222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.+|+.++-++.|+++ .|.++..||..+|||.+||...+.+...
T Consensus 198 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~~~ra~~ 240 (243)
T 1l0o_C 198 ELDERERLIVYLRYY-KDQTQSEVASRLGISQVQMSRLEKKILQ 240 (243)
T ss_dssp --------------------------------------------
T ss_pred hCCHHHHHHHHHHHh-cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 478888888888775 7899999999999999999988776544
No 47
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=62.40 E-value=3.4 Score=34.49 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=39.6
Q ss_pred CCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHh
Q 046732 221 NAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRS 269 (516)
Q Consensus 221 ~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~ 269 (516)
..+...-+++|-|-+=-++.++..||..||.+.|||...+..+-..+..
T Consensus 32 ~~i~~aRqiAmYL~r~~t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 32 RALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 4566667888888777799999999999999999988777776665543
No 48
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=57.65 E-value=2.8 Score=35.45 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=23.8
Q ss_pred hhcccCCcchhhhhhcccccceeeehh
Q 046732 234 WRLATGEPLRLVSKRFGLGISTCHKLV 260 (516)
Q Consensus 234 ~~La~G~s~~~la~~Fgis~STvsrii 260 (516)
.+|..|.+|+.|+...|+|.+||+|+-
T Consensus 53 ~lL~~G~SyreIa~~tG~StaTIsRv~ 79 (107)
T 3frw_A 53 KMLTDKRTYLDISEKTGASTATISRVN 79 (107)
T ss_dssp HHHHTTCCHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCccHHHHHHHH
Confidence 458899999999999999999988753
No 49
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=56.98 E-value=7.5 Score=33.03 Aligned_cols=43 Identities=12% Similarity=0.034 Sum_probs=27.6
Q ss_pred CCCHhhH-HHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732 222 AIPVRQR-VAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 222 ~l~~eek-L~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.+++.+- ++..|+. ..+.+..+|+..++++++||++++.....
T Consensus 34 ~lt~~~~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 34 DLTPPDVHVLKLIDE-QRGLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp CCCHHHHHHHHHHHH-TTTCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3555553 4444433 35789999999999999999888776543
No 50
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=55.81 E-value=2.6 Score=36.33 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=27.4
Q ss_pred hHHHHHHhhcccCCcchhhhhhcccccceeeehh
Q 046732 227 QRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLV 260 (516)
Q Consensus 227 ekL~v~L~~La~G~s~~~la~~Fgis~STvsrii 260 (516)
++ .-++..|+.|.+|+.|+...|+|.+||+|+-
T Consensus 64 ~R-~eV~klL~~G~syreIA~~~g~S~aTIsRv~ 96 (119)
T 3kor_A 64 QR-LQVAKMIKQGYTYATIEQESGASTATISRVK 96 (119)
T ss_dssp HH-HHHHHHHHHTCCHHHHHHHHCCCHHHHHHHH
T ss_pred HH-HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHH
Confidence 44 4456678999999999999999999988743
No 51
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=54.91 E-value=6.6 Score=36.32 Aligned_cols=80 Identities=3% Similarity=-0.156 Sum_probs=53.0
Q ss_pred CChhHHHHHcCCCHHHHHHHHHHhhccccc--cCCCCCCCCCHhhHHHHHHhhcccC--------Ccchhhhhhcccccc
Q 046732 185 YPEEEFKKWFRMRRQTFDMICEELNSVIAK--EDTTLRNAIPVRQRVAVCIWRLATG--------EPLRLVSKRFGLGIS 254 (516)
Q Consensus 185 ~~d~~Fk~~FRmsk~tF~~L~~~L~~~i~k--~~t~~r~~l~~eekL~v~L~~La~G--------~s~~~la~~Fgis~S 254 (516)
++-+.|...+.-.+.....++..+...+.. .........++.++|+-+|..|+.. .+...||...|+++.
T Consensus 122 i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~ 201 (232)
T 1zyb_A 122 ISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWDEPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRL 201 (232)
T ss_dssp EEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHTTSCCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHH
T ss_pred EEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChh
Confidence 455677777766666555555544332211 0111223568999999999887532 478899999999999
Q ss_pred eeeehhhhhH
Q 046732 255 TCHKLVLEVC 264 (516)
Q Consensus 255 Tvsrii~~v~ 264 (516)
|++|++.++.
T Consensus 202 tvsR~l~~l~ 211 (232)
T 1zyb_A 202 NISKTLNELQ 211 (232)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 52
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=54.04 E-value=5.5 Score=41.56 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=36.7
Q ss_pred CCCHhhHHHHHHhh-cc--cCCcchhhhhhcccccceeeehhhhhHHHHH
Q 046732 222 AIPVRQRVAVCIWR-LA--TGEPLRLVSKRFGLGISTCHKLVLEVCTAIR 268 (516)
Q Consensus 222 ~l~~eekL~v~L~~-La--~G~s~~~la~~Fgis~STvsrii~~v~~aL~ 268 (516)
.+|+.++-.+.|+| |. .|.++..||..||||..||..+..+....|.
T Consensus 360 ~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 47888999999988 54 6789999999999999999999888877776
No 53
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=53.65 E-value=5.9 Score=43.33 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=41.7
Q ss_pred CCCCHhhHHHHHHhhcc---cCCcchhhhhhcccccceeeehhhhhHHHHHhh
Q 046732 221 NAIPVRQRVAVCIWRLA---TGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSV 270 (516)
Q Consensus 221 ~~l~~eekL~v~L~~La---~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~ 270 (516)
..+|+.++-.+.|+|+- .|.++..||..||||.+||..+..+....|...
T Consensus 549 ~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kLR~~ 601 (613)
T 3iyd_F 549 AGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP 601 (613)
T ss_dssp TSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTTTSC
T ss_pred HcCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHhhCc
Confidence 35899999999998863 788999999999999999998888776665543
No 54
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=51.72 E-value=3.2 Score=33.37 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=23.2
Q ss_pred ccCCcchhhhhhcccccceeeehhhhhH
Q 046732 237 ATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 237 a~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
..+.+..+|+..+|++++||++++....
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~ 61 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLI 61 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567889999999999999988876653
No 55
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=51.58 E-value=4.6 Score=42.39 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=40.9
Q ss_pred CCCHhhHHHHHHhh-cc--cCCcchhhhhhcccccceeeehhhhhHHHHH
Q 046732 222 AIPVRQRVAVCIWR-LA--TGEPLRLVSKRFGLGISTCHKLVLEVCTAIR 268 (516)
Q Consensus 222 ~l~~eekL~v~L~~-La--~G~s~~~la~~Fgis~STvsrii~~v~~aL~ 268 (516)
.+|..++-.+.|+| |. .|.++..||..+|||..||..+..+....|.
T Consensus 375 ~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 47889999999988 54 6789999999999999999999888877766
No 56
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=50.64 E-value=4.6 Score=36.71 Aligned_cols=103 Identities=11% Similarity=0.084 Sum_probs=61.6
Q ss_pred CChhHHHHHcCCCHHHHHHHHHHhhccccccC--CCCCCCCCHhhHHHHHHhhccc-------CCcchhhhhhcccccce
Q 046732 185 YPEEEFKKWFRMRRQTFDMICEELNSVIAKED--TTLRNAIPVRQRVAVCIWRLAT-------GEPLRLVSKRFGLGIST 255 (516)
Q Consensus 185 ~~d~~Fk~~FRmsk~tF~~L~~~L~~~i~k~~--t~~r~~l~~eekL~v~L~~La~-------G~s~~~la~~Fgis~ST 255 (516)
++-+.|...+.-.+..-..+...+...+.... .......++.++++-.|..++. ..+...||...|+++.|
T Consensus 106 i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~t 185 (220)
T 3dv8_A 106 IPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLIEQIMWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREV 185 (220)
T ss_dssp EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHH
T ss_pred EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHH
Confidence 34466666665555544444443332211100 0001246888999999988874 56889999999999999
Q ss_pred eeehhhhhHHH-HHhhcccccccCCChhHHHhhH
Q 046732 256 CHKLVLEVCTA-IRSVLMPKYLQWPDDDALRKIK 288 (516)
Q Consensus 256 vsrii~~v~~a-L~~~L~~~~I~~P~~ee~~~i~ 288 (516)
++|++.++... +.. +....|..++.+.+..++
T Consensus 186 vsR~l~~L~~~g~I~-~~~~~i~i~d~~~L~~~a 218 (220)
T 3dv8_A 186 ITRMLRYFQVEGLVK-LSRGKITILDSKRLETLQ 218 (220)
T ss_dssp HHHHHHHHHHTTSEE-EETTEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHCCCEE-eCCCEEEEeCHHHHHHHh
Confidence 99998876542 222 234445555655555443
No 57
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=50.60 E-value=4 Score=35.79 Aligned_cols=36 Identities=28% Similarity=0.272 Sum_probs=30.0
Q ss_pred hHHHHHHhhcccCCcchhhhhhccc-ccceeeehhhh
Q 046732 227 QRVAVCIWRLATGEPLRLVSKRFGL-GISTCHKLVLE 262 (516)
Q Consensus 227 ekL~v~L~~La~G~s~~~la~~Fgi-s~STvsrii~~ 262 (516)
+.+--.+.+|+.|.+.+.++..+|| |.+|+++.+.+
T Consensus 16 e~~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 16 EVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp THHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHc
Confidence 3344456678999999999999999 89999998866
No 58
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=47.97 E-value=4.3 Score=34.57 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=26.9
Q ss_pred HHHHHHhhcccC-CcchhhhhhcccccceeeehhhhhHH
Q 046732 228 RVAVCIWRLATG-EPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 228 kL~v~L~~La~G-~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
+++.+|+.-..+ .+...|+...++++|||++.+.....
T Consensus 30 ~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~ 68 (123)
T 3r0a_A 30 NVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHE 68 (123)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444433223 57889999999999999998877654
No 59
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=47.75 E-value=4.3 Score=34.47 Aligned_cols=39 Identities=3% Similarity=-0.036 Sum_probs=28.8
Q ss_pred hhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 226 RQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 226 eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
..+++..|+.-..+.+..+|+..+|+++|||++++....
T Consensus 28 ~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~ 66 (152)
T 1ku9_A 28 VGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLE 66 (152)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345666663234678899999999999999988775543
No 60
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=46.24 E-value=4.2 Score=37.23 Aligned_cols=34 Identities=24% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHhhcccCCcchhhhhhcccccceeeehhhh
Q 046732 229 VAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLE 262 (516)
Q Consensus 229 L~v~L~~La~G~s~~~la~~Fgis~STvsrii~~ 262 (516)
+--...++..|.++..++..+|||.+|+++++..
T Consensus 148 ~~~i~~l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~ 181 (193)
T 3uj3_X 148 WEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPA 181 (193)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4344556678999999999999999999987754
No 61
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=46.05 E-value=5.4 Score=30.28 Aligned_cols=38 Identities=8% Similarity=0.074 Sum_probs=26.1
Q ss_pred hhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhh
Q 046732 226 RQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEV 263 (516)
Q Consensus 226 eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v 263 (516)
.++++-.|.--....+..+|+..+|+|++||++++...
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L 49 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRL 49 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34454444321234678999999999999988877554
No 62
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=45.70 E-value=6.3 Score=36.72 Aligned_cols=40 Identities=10% Similarity=0.090 Sum_probs=30.7
Q ss_pred CCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhh
Q 046732 223 IPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLE 262 (516)
Q Consensus 223 l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~ 262 (516)
.+..+.-.-+.+++..|.++..||..+|||+++|+|.+..
T Consensus 8 ~sl~eiG~ria~~y~~g~tQ~eIA~~lGiSr~~VSR~L~~ 47 (192)
T 1zx4_A 8 HSIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp SCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 4444444444455789999999999999999999997654
No 63
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=45.46 E-value=7.6 Score=36.77 Aligned_cols=45 Identities=9% Similarity=0.084 Sum_probs=36.2
Q ss_pred CCCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHH
Q 046732 220 RNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTA 266 (516)
Q Consensus 220 r~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~a 266 (516)
...+++.++-.+.| ++.|.+...||...|||..||...+..+..-
T Consensus 173 ~~~Lt~re~~vl~~--~~~G~s~~eIa~~l~is~~tV~~~~~~~~~k 217 (237)
T 3szt_A 173 NVRLTARETEMLKW--TAVGKTYGEIGLILSIDQRTVKFHIVNAMRK 217 (237)
T ss_dssp GCCCCHHHHHHHHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35788888765544 6899999999999999999998877666543
No 64
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=45.04 E-value=3.7 Score=38.46 Aligned_cols=81 Identities=12% Similarity=0.124 Sum_probs=53.1
Q ss_pred CChhHHHHHcCCCHHHHHHHHHHhhccccccC--CCCCCCCCHhhHHHHHHhhccc--------------CCcchhhhhh
Q 046732 185 YPEEEFKKWFRMRRQTFDMICEELNSVIAKED--TTLRNAIPVRQRVAVCIWRLAT--------------GEPLRLVSKR 248 (516)
Q Consensus 185 ~~d~~Fk~~FRmsk~tF~~L~~~L~~~i~k~~--t~~r~~l~~eekL~v~L~~La~--------------G~s~~~la~~ 248 (516)
++-+.|...+.-.+.....++..+...+.... ...-...+++++|+-+|..|+. ..+..+||..
T Consensus 123 i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~ 202 (243)
T 3la7_A 123 APIEQVEQALKENPELSMLMLRGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEA 202 (243)
T ss_dssp EEHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHH
T ss_pred EcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHH
Confidence 45577777777776665555554443221100 0001235788999999987742 3567899999
Q ss_pred cccccceeeehhhhhHH
Q 046732 249 FGLGISTCHKLVLEVCT 265 (516)
Q Consensus 249 Fgis~STvsrii~~v~~ 265 (516)
.|+++.||+|++.++..
T Consensus 203 lG~sr~tvsR~l~~L~~ 219 (243)
T 3la7_A 203 IGSTRVTVTRLLGDLRE 219 (243)
T ss_dssp HTCCHHHHHHHHHHHHH
T ss_pred HCCcHHHHHHHHHHHHH
Confidence 99999999998877643
No 65
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=44.70 E-value=11 Score=23.15 Aligned_cols=16 Identities=44% Similarity=0.692 Sum_probs=7.7
Q ss_pred HhhhhccccCCCCCCC
Q 046732 9 RKRKRKDEQVGYEDDD 24 (516)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (516)
|.|+||..-|-|||||
T Consensus 4 rrrrrkrkrewddddd 19 (28)
T 3ukx_C 4 RRRRRKRKREWDDDDD 19 (28)
T ss_dssp --CCCCCCCCCCCSSS
T ss_pred hHHHHHhhcccccCCC
Confidence 4455555555555555
No 66
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=44.63 E-value=4.8 Score=32.31 Aligned_cols=26 Identities=4% Similarity=0.006 Sum_probs=22.3
Q ss_pred CcchhhhhhcccccceeeehhhhhHH
Q 046732 240 EPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 240 ~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.+..+|+..++++++||++++.....
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 78899999999999999988766543
No 67
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=43.72 E-value=13 Score=36.16 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=48.4
Q ss_pred CCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHhhcccccccCCChhHHHhhHHHHHhhhC
Q 046732 223 IPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEVISG 296 (516)
Q Consensus 223 l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L~~~~I~~P~~ee~~~i~~~F~~~~g 296 (516)
+|+.++-++.|+++ .|.++..++...|++.+||...+.+....+...+....+-.-+......+...+-...|
T Consensus 112 Lp~~~R~v~~L~~~-eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l~~rILvVdD~~~~~~~l~~~L~~~g 184 (286)
T 3n0r_A 112 IAPRSRQAFLLTAL-EGFTPTEAAQILDCDFGEVERLIGDAQAEIDAELATEVLIIEDEPVIAADIEALVRELG 184 (286)
T ss_dssp HSCHHHHHHHHHHT-TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCCCEEEEECCSHHHHHHHHHHHHHTT
T ss_pred CCHHHeeEEEEEee-CCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccCCCcEEEEcCCHHHHHHHHHHhhccC
Confidence 56677877777665 78999999999999999998888887777776544333333333333343333333333
No 68
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=43.59 E-value=6.2 Score=33.62 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=28.6
Q ss_pred hHHHHHHhhc---ccCCcchhhhhhcccccceeeehhhhhHH
Q 046732 227 QRVAVCIWRL---ATGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 227 ekL~v~L~~L---a~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
..++.+|+.+ ..+.+..+|+..++++++||++.+.....
T Consensus 16 ~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~ 57 (139)
T 2x4h_A 16 FSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEE 57 (139)
T ss_dssp HHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHH
Confidence 3455555555 24568999999999999999888766543
No 69
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=43.55 E-value=8.5 Score=36.81 Aligned_cols=46 Identities=9% Similarity=0.170 Sum_probs=39.0
Q ss_pred CCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHH
Q 046732 221 NAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIR 268 (516)
Q Consensus 221 ~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~ 268 (516)
..+|+.++-++.|. ..|.++..+|...|+|.+||...+.+....|.
T Consensus 196 ~~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~ 241 (258)
T 3clo_A 196 NILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNILEKLS 241 (258)
T ss_dssp TSSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 46899999888885 49999999999999999999888777665544
No 70
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=43.52 E-value=30 Score=28.21 Aligned_cols=78 Identities=10% Similarity=-0.011 Sum_probs=46.8
Q ss_pred CCCChhHHHHHcCCCHHHHHHHHHHhhcc--cc-ccCCC-CCCCCCHhhHHHHHHhhcc--cCCcchhhhhhc---c---
Q 046732 183 PDYPEEEFKKWFRMRRQTFDMICEELNSV--IA-KEDTT-LRNAIPVRQRVAVCIWRLA--TGEPLRLVSKRF---G--- 250 (516)
Q Consensus 183 ~~~~d~~Fk~~FRmsk~tF~~L~~~L~~~--i~-k~~t~-~r~~l~~eekL~v~L~~La--~G~s~~~la~~F---g--- 250 (516)
..++-.+.-..|++++.|+...+...... +. +.... ....++++..-. .+.++. ...+...|+..+ |
T Consensus 32 ~g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~-i~~~~~~~~~~s~~~i~~~l~~~g~~~ 110 (128)
T 1pdn_C 32 DGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENR-IEEYKRSSPGMFSWEIREKLIREGVCD 110 (128)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHH-HHHTTTTCTTCCHHHHHHHHHHTSSSC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHH-HHHHHHhCcchHHHHHHHHHHHcCCcc
Confidence 35677889999999999998887765432 11 11111 223455543322 233333 236778888877 6
Q ss_pred ----cccceeeehhh
Q 046732 251 ----LGISTCHKLVL 261 (516)
Q Consensus 251 ----is~STvsrii~ 261 (516)
+|.+||+++++
T Consensus 111 ~~~~~s~~tv~r~l~ 125 (128)
T 1pdn_C 111 RSTAPSVSAISRLVR 125 (128)
T ss_dssp STTCCCHHHHHHHC-
T ss_pred ccCCcCHHHHHHHHH
Confidence 47788777664
No 71
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=42.69 E-value=5.7 Score=31.92 Aligned_cols=38 Identities=8% Similarity=0.152 Sum_probs=29.5
Q ss_pred CHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhh
Q 046732 224 PVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEV 263 (516)
Q Consensus 224 ~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v 263 (516)
+..++++..|. ..|.+...||..+|+|+++|.+.+...
T Consensus 17 ~~~~~IL~lL~--~~g~sa~eLAk~LgiSk~aVr~~L~~L 54 (82)
T 1oyi_A 17 EIVCEAIKTIG--IEGATAAQLTRQLNMEKREVNKALYDL 54 (82)
T ss_dssp HHHHHHHHHHS--SSTEEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45566776666 467999999999999999987766554
No 72
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=42.66 E-value=5.8 Score=36.62 Aligned_cols=67 Identities=19% Similarity=0.133 Sum_probs=45.9
Q ss_pred CCCCHhhHHHHHHhhccc----------CCcchhhhhhcccccceeeehhhhhHHHHHhhcccccccCCChhHHHhhH
Q 046732 221 NAIPVRQRVAVCIWRLAT----------GEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIK 288 (516)
Q Consensus 221 ~~l~~eekL~v~L~~La~----------G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L~~~~I~~P~~ee~~~i~ 288 (516)
...++.++|+-.|..++. ..+...||...|+++.||+|++.++...=.. .....|...+.+.+..++
T Consensus 150 ~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~gi~-~~~~~i~I~d~~~L~~~~ 226 (237)
T 3fx3_A 150 KAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAAGVT-VKRNHAEIEDIALLRDYA 226 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGGTEE-CCTTEEEESCHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCeE-eeCCEEEEcCHHHHHHHh
Confidence 356899999999998863 2347789999999999999998776532112 234445555555554443
No 73
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=42.31 E-value=5.8 Score=31.83 Aligned_cols=28 Identities=7% Similarity=0.018 Sum_probs=23.3
Q ss_pred ccCCcchhhhhhcccccceeeehhhhhH
Q 046732 237 ATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 237 a~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
..+.+..+|+..+|+|++||++.+....
T Consensus 41 ~~~~~~~eLa~~l~is~~tv~~~L~~L~ 68 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDYHLKVLE 68 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5668899999999999999988775543
No 74
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=42.09 E-value=6.4 Score=30.63 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=33.1
Q ss_pred CCCHhhHHHHHHhhcccC-Ccchhhhhhcccccceeeehhh
Q 046732 222 AIPVRQRVAVCIWRLATG-EPLRLVSKRFGLGISTCHKLVL 261 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~G-~s~~~la~~Fgis~STvsrii~ 261 (516)
.---++.|..+|.-+.+| .+....+..|||+.||+..-++
T Consensus 12 r~Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk 52 (70)
T 2cob_A 12 RQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVK 52 (70)
T ss_dssp CCCCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHH
Confidence 335578899999999999 8999999999999999765443
No 75
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=41.92 E-value=13 Score=30.69 Aligned_cols=36 Identities=8% Similarity=0.091 Sum_probs=28.1
Q ss_pred HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732 228 RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 228 kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
+++..|.. .+.+...++..+|++++||++.+.....
T Consensus 36 ~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 36 MILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp HHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44444432 4789999999999999999999887655
No 76
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=41.33 E-value=7.7 Score=33.91 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=30.8
Q ss_pred CCCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 222 AIPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 222 ~l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
.+++.+ .++..|+....+.+..+|+..++++++|+++++....
T Consensus 28 gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le 71 (151)
T 4aik_A 28 ELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLE 71 (151)
T ss_dssp CCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 355544 4555555555667778999999999999988776654
No 77
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=41.19 E-value=7.4 Score=30.47 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=28.1
Q ss_pred hhHHHHHHhhccc--CCcchhhhhhcccccceeeehhhhh
Q 046732 226 RQRVAVCIWRLAT--GEPLRLVSKRFGLGISTCHKLVLEV 263 (516)
Q Consensus 226 eekL~v~L~~La~--G~s~~~la~~Fgis~STvsrii~~v 263 (516)
+++++-+|.-.+. +.+...||..+|++++||.+.+...
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L 55 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3566666665553 5688999999999999987766554
No 78
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=40.05 E-value=13 Score=31.35 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=30.0
Q ss_pred CCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 223 IPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 223 l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
+++.+ .++..|+ ..+.+...|+..++++++||++++....
T Consensus 35 l~~~~~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le 75 (146)
T 2gxg_A 35 LSYLDFLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLE 75 (146)
T ss_dssp CCHHHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHH
Confidence 55544 4444554 6778999999999999999988776654
No 79
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=39.76 E-value=10 Score=32.05 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=28.7
Q ss_pred hHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 227 QRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 227 ekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
-.++..|+.-..+.+...|+..++++++||++++....
T Consensus 40 ~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~ 77 (146)
T 2fbh_A 40 WLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLE 77 (146)
T ss_dssp HHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHH
Confidence 34555553445678999999999999999988776654
No 80
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=39.31 E-value=9.4 Score=34.27 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=34.6
Q ss_pred CCCHhhHHHHHHhhccc-------------CCcchhhhhhcccccceeeehhhhhH
Q 046732 222 AIPVRQRVAVCIWRLAT-------------GEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~-------------G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
..++.++|+-+|..|+. ..+...||...|+++.|++|++.++.
T Consensus 137 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~ 192 (210)
T 3ryp_A 137 FLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLE 192 (210)
T ss_dssp HSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 35788999999988763 23578999999999999998877654
No 81
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=39.01 E-value=15 Score=30.01 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=27.5
Q ss_pred hHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732 227 QRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 227 ekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.+++..|. ..+.+..+|+..+|++++||++.+.....
T Consensus 29 ~~IL~~L~--~~~~~~~ela~~l~is~stvs~~L~~L~~ 65 (106)
T 1r1u_A 29 IRIMELLS--VSEASVGHISHQLNLSQSNVSHQLKLLKS 65 (106)
T ss_dssp HHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34444443 45568999999999999999998876543
No 82
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=38.98 E-value=6.6 Score=31.52 Aligned_cols=32 Identities=16% Similarity=0.035 Sum_probs=24.5
Q ss_pred HHHHhhcccCCcchhhhhhcccccceeeehhh
Q 046732 230 AVCIWRLATGEPLRLVSKRFGLGISTCHKLVL 261 (516)
Q Consensus 230 ~v~L~~La~G~s~~~la~~Fgis~STvsrii~ 261 (516)
-..|..+..|.++..||...||+++|++.+++
T Consensus 23 ~~kLK~il~GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 23 RNALKDLLKDMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp HHHHHHHHTTSCHHHHHHHSSSCHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHcCCCHHHHHHHHc
Confidence 33444444499999999999999999877653
No 83
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=38.83 E-value=30 Score=29.02 Aligned_cols=42 Identities=10% Similarity=0.131 Sum_probs=29.8
Q ss_pred CCCCHhhH-HHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 221 NAIPVRQR-VAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 221 ~~l~~eek-L~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
..+++.+. ++..|+ .+|.+..+|+..+|++++||++++....
T Consensus 34 ~~lt~~~~~iL~~l~--~~~~t~~eLa~~l~~s~~tvs~~l~~L~ 76 (146)
T 3tgn_A 34 VALTNTQEHILMLLS--EESLTNSELARRLNVSQAAVTKAIKSLV 76 (146)
T ss_dssp SCCCHHHHHHHHHHT--TCCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH--hCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35666554 333333 3449999999999999999988776654
No 84
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=38.51 E-value=11 Score=30.09 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=28.3
Q ss_pred HHHHHHhhcc---cCCcchhhhhhcccccce-eeehhhhhHH
Q 046732 228 RVAVCIWRLA---TGEPLRLVSKRFGLGIST-CHKLVLEVCT 265 (516)
Q Consensus 228 kL~v~L~~La---~G~s~~~la~~Fgis~ST-vsrii~~v~~ 265 (516)
+.+.+|..|. .+.+..+|+..++++++| +++++.....
T Consensus 16 ~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~ 57 (95)
T 2pg4_A 16 RILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIR 57 (95)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 3344444443 258999999999999999 9998877654
No 85
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=38.00 E-value=5 Score=36.81 Aligned_cols=101 Identities=16% Similarity=0.180 Sum_probs=59.9
Q ss_pred CChhHHHHHcCCCHHHHHHHHHHhhccccccC--CCCCCCCCHhhHHHHHHhhcc--------------cCCcchhhhhh
Q 046732 185 YPEEEFKKWFRMRRQTFDMICEELNSVIAKED--TTLRNAIPVRQRVAVCIWRLA--------------TGEPLRLVSKR 248 (516)
Q Consensus 185 ~~d~~Fk~~FRmsk~tF~~L~~~L~~~i~k~~--t~~r~~l~~eekL~v~L~~La--------------~G~s~~~la~~ 248 (516)
++-+.|...+.-.+.....++..+...+.... ...-...++.++|+-+|..|+ -..+..+||..
T Consensus 107 i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~ 186 (227)
T 3d0s_A 107 MDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQL 186 (227)
T ss_dssp EEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHH
T ss_pred EeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHH
Confidence 45566777766666655555544433211100 000123578899999888764 23578899999
Q ss_pred cccccceeeehhhhhHHH-HHhhcccccccCCChhHHHh
Q 046732 249 FGLGISTCHKLVLEVCTA-IRSVLMPKYLQWPDDDALRK 286 (516)
Q Consensus 249 Fgis~STvsrii~~v~~a-L~~~L~~~~I~~P~~ee~~~ 286 (516)
.|+++.|++|++.++... +.. .....|..++.+.+..
T Consensus 187 lg~sr~tvsR~l~~l~~~g~I~-~~~~~i~i~d~~~L~~ 224 (227)
T 3d0s_A 187 VGASRETVNKALADFAHRGWIR-LEGKSVLISDSERLAR 224 (227)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEE-EETTEEEESCHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHCCCEE-ecCCEEEEcCHHHHHH
Confidence 999999999998886532 222 2234455555444443
No 86
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=37.82 E-value=11 Score=29.94 Aligned_cols=37 Identities=8% Similarity=0.129 Sum_probs=27.4
Q ss_pred HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732 228 RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 228 kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
+++..|.. ..+.+..+|+..+|++++||++++.....
T Consensus 24 ~il~~l~~-~~~~s~~ela~~l~is~~tv~~~l~~L~~ 60 (109)
T 1sfx_A 24 RIYSLLLE-RGGMRVSEIARELDLSARFVRDRLKVLLK 60 (109)
T ss_dssp HHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444432 35678999999999999999988877643
No 87
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=37.32 E-value=14 Score=34.62 Aligned_cols=47 Identities=9% Similarity=0.115 Sum_probs=37.5
Q ss_pred CCCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHH
Q 046732 220 RNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIR 268 (516)
Q Consensus 220 r~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~ 268 (516)
...+++.++-++.| ++.|.++..||...|+|.+||...+.+...-|.
T Consensus 171 ~~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRW--IAVGKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHH--HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 34688888866555 579999999999999999999888776655443
No 88
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=37.21 E-value=7.2 Score=30.90 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=22.6
Q ss_pred CCcchhhhhhcccccceeeehhhhhH
Q 046732 239 GEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 239 G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
+.+..+|+..+|++++||++.+....
T Consensus 38 ~~s~~ela~~l~is~~tvs~~l~~L~ 63 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQHLARMR 63 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 57899999999999999998877654
No 89
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=37.18 E-value=12 Score=35.15 Aligned_cols=47 Identities=9% Similarity=0.212 Sum_probs=37.4
Q ss_pred CCCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHH
Q 046732 220 RNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIR 268 (516)
Q Consensus 220 r~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~ 268 (516)
...+++.++-++.| ++.|.++..||...|||.+||...+.+...-|.
T Consensus 173 ~~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 173 KQMLSPREMLCLVW--ASKGKTASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GGSCCHHHHHHHHH--HHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 34688888876554 579999999999999999999887776655443
No 90
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=37.03 E-value=16 Score=31.78 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=29.6
Q ss_pred CCCHhhH-HHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 222 AIPVRQR-VAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 222 ~l~~eek-L~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
.+++.+- ++..|+. ..+.+..+|+..++++++||++++....
T Consensus 43 glt~~q~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le 85 (162)
T 3k0l_A 43 EISLPQFTALSVLAA-KPNLSNAKLAERSFIKPQSANKILQDLL 85 (162)
T ss_dssp TCCHHHHHHHHHHHH-CTTCCHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455443 3333433 3578999999999999999988876654
No 91
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=36.84 E-value=6.8 Score=35.41 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=59.9
Q ss_pred CChhHHHHHcCCCHHHHHHHHHHhhccccccCC--CCCCCCCHhhHHHHHHhhcc-------cCCcchhhhhhcccccce
Q 046732 185 YPEEEFKKWFRMRRQTFDMICEELNSVIAKEDT--TLRNAIPVRQRVAVCIWRLA-------TGEPLRLVSKRFGLGIST 255 (516)
Q Consensus 185 ~~d~~Fk~~FRmsk~tF~~L~~~L~~~i~k~~t--~~r~~l~~eekL~v~L~~La-------~G~s~~~la~~Fgis~ST 255 (516)
++-+.|...+.-.+.....++..+...+..... ..-...++.++|+-.|..|+ ...+...||...|+++.|
T Consensus 100 i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~t 179 (216)
T 4ev0_A 100 LFREDYLALIRRLPLVAHNLAALLARRLREADLELDLLSFEEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRET 179 (216)
T ss_dssp EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHH
T ss_pred EcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHH
Confidence 344556665555554444444443332111000 00112467899999997764 235789999999999999
Q ss_pred eeehhhhhHHH-HHhhcccccccCCChhHHHhhH
Q 046732 256 CHKLVLEVCTA-IRSVLMPKYLQWPDDDALRKIK 288 (516)
Q Consensus 256 vsrii~~v~~a-L~~~L~~~~I~~P~~ee~~~i~ 288 (516)
++|++.++... +.. .....|..++.+.+..++
T Consensus 180 vsR~l~~l~~~g~I~-~~~~~i~i~d~~~L~~~a 212 (216)
T 4ev0_A 180 VSRVLHALAEEGVVR-LGPGTVEVREAALLEEIA 212 (216)
T ss_dssp HHHHHHHHHHTTSEE-EETTEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHCCCEE-ecCCEEEEeCHHHHHHHh
Confidence 99998887542 222 234455556665555544
No 92
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=36.83 E-value=5.2 Score=30.39 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=17.9
Q ss_pred cchhhhhhcccccceeeehhh
Q 046732 241 PLRLVSKRFGLGISTCHKLVL 261 (516)
Q Consensus 241 s~~~la~~Fgis~STvsrii~ 261 (516)
+..+|+...|||.+||+++++
T Consensus 2 T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 467899999999999988764
No 93
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=36.78 E-value=8.6 Score=32.86 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=27.7
Q ss_pred hHHHHHHhhc---ccCCcchhhhhhcccccceeeehhhhhH
Q 046732 227 QRVAVCIWRL---ATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 227 ekL~v~L~~L---a~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
+.++..|+.+ ..+.+..+|+..+|++++||++++....
T Consensus 7 ~~~L~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le 47 (142)
T 1on2_A 7 EMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLD 47 (142)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3344444443 3567899999999999999988876654
No 94
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=36.35 E-value=10 Score=31.86 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=30.2
Q ss_pred CCHhh-HHHHHHhhccc-CCcchhhhhhcccccceeeehhhhhH
Q 046732 223 IPVRQ-RVAVCIWRLAT-GEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 223 l~~ee-kL~v~L~~La~-G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
+++.+ .++..|+.... +.+...|+..++++++||++++....
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le 75 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRME 75 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHH
Confidence 45444 45555554432 68999999999999999988776654
No 95
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=36.20 E-value=11 Score=33.77 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=33.9
Q ss_pred CCCHhhHHHHHHhhccc-------------CCcchhhhhhcccccceeeehhhhhH
Q 046732 222 AIPVRQRVAVCIWRLAT-------------GEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~-------------G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
..++.++|+-+|..|+. ..+...||...|+++.|++|++.++.
T Consensus 134 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~ 189 (207)
T 2oz6_A 134 FLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLE 189 (207)
T ss_dssp HCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 35788999988877654 24678899999999999988877654
No 96
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=36.16 E-value=17 Score=30.21 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=30.7
Q ss_pred CCCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732 222 AIPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 222 ~l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.+++.+ .++..|+. ..+.+..+|+..++++++||++++.....
T Consensus 35 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~L~~ 78 (140)
T 2nnn_A 35 GLTPTQWAALVRLGE-TGPCPQNQLGRLTAMDAATIKGVVERLDK 78 (140)
T ss_dssp CCCHHHHHHHHHHHH-HSSBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455554 34444443 34789999999999999999888766543
No 97
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=36.10 E-value=15 Score=29.33 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=28.0
Q ss_pred hHHHHHHhhcccCCcchhh----hhhcccccceeeehhhhhHH
Q 046732 227 QRVAVCIWRLATGEPLRLV----SKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 227 ekL~v~L~~La~G~s~~~l----a~~Fgis~STvsrii~~v~~ 265 (516)
..++..|+. ..+.+..+| +..++++++||++++.....
T Consensus 11 ~~iL~~l~~-~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 11 AIVLAYLYD-NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp HHHHHHHTT-CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344444433 346778888 99999999999998877665
No 98
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=35.61 E-value=9.6 Score=31.80 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=31.9
Q ss_pred hHHHHHHhhcccCCcchhhhhhcccccceeeehhhhh
Q 046732 227 QRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEV 263 (516)
Q Consensus 227 ekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v 263 (516)
.+++|+.....++.++...+..|+||.+++.+....+
T Consensus 38 rK~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y 74 (101)
T 2oa4_A 38 RKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSAL 74 (101)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 4899999999999999999999999999876655444
No 99
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=35.58 E-value=14 Score=28.69 Aligned_cols=27 Identities=7% Similarity=0.053 Sum_probs=22.0
Q ss_pred cCCcchhhhhhcccccceeeehhhhhH
Q 046732 238 TGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 238 ~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
.+.+..+|+..+|+|++||++.+....
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~ 39 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLE 39 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 357889999999999999887765543
No 100
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=35.05 E-value=14 Score=30.72 Aligned_cols=42 Identities=14% Similarity=0.102 Sum_probs=29.8
Q ss_pred CCCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 222 AIPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 222 ~l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
.+++.+ .++..|+. ..+.+..+|+..++++++||++++....
T Consensus 26 ~l~~~~~~iL~~l~~-~~~~~~~ela~~l~~s~~tvs~~l~~L~ 68 (138)
T 3bpv_A 26 NLTDAQVACLLRIHR-EPGIKQDELATFFHVDKGTIARTLRRLE 68 (138)
T ss_dssp TCCHHHHHHHHHHHH-STTCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345444 34444443 4678899999999999999988776654
No 101
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=35.03 E-value=9.8 Score=31.34 Aligned_cols=37 Identities=5% Similarity=0.109 Sum_probs=27.8
Q ss_pred hHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732 227 QRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 227 ekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.+++..|. ..+.+..+|+..+|++++||++.+.....
T Consensus 28 ~~IL~~L~--~~~~s~~eLa~~lgis~stvs~~L~~L~~ 64 (108)
T 2kko_A 28 LQILDLLA--QGERAVEAIATATGMNLTTASANLQALKS 64 (108)
T ss_dssp HHHHHHHT--TCCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34544443 35578999999999999999998877654
No 102
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=34.97 E-value=5.4 Score=37.37 Aligned_cols=66 Identities=9% Similarity=0.070 Sum_probs=45.6
Q ss_pred CCCHhhHHHHHHhhcc--------------cCCcchhhhhhcccccceeeehhhhhHHH-HHhhcccccccCCChhHHHh
Q 046732 222 AIPVRQRVAVCIWRLA--------------TGEPLRLVSKRFGLGISTCHKLVLEVCTA-IRSVLMPKYLQWPDDDALRK 286 (516)
Q Consensus 222 ~l~~eekL~v~L~~La--------------~G~s~~~la~~Fgis~STvsrii~~v~~a-L~~~L~~~~I~~P~~ee~~~ 286 (516)
..+++++|+-.|..|+ -..+...||...|+++.|++|++.++... +.. .....|...+.+.+..
T Consensus 146 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~-~~~~~i~i~d~~~L~~ 224 (250)
T 3e6c_C 146 TYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENILD-KKKNKIIVYNLGELKH 224 (250)
T ss_dssp TSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-ECSSEEEESCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeE-eCCCEEEEecHHHHHH
Confidence 4688999999998765 23478889999999999999998876543 222 2233444455555544
Q ss_pred hH
Q 046732 287 IK 288 (516)
Q Consensus 287 i~ 288 (516)
++
T Consensus 225 ~a 226 (250)
T 3e6c_C 225 LS 226 (250)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 103
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=34.93 E-value=17 Score=30.74 Aligned_cols=42 Identities=12% Similarity=-0.034 Sum_probs=30.4
Q ss_pred CCCHhhH-HHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 222 AIPVRQR-VAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 222 ~l~~eek-L~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
.+++.+- ++..|+ -..+.+..+|+..++++++|+++++....
T Consensus 34 ~lt~~~~~iL~~l~-~~~~~t~~eLa~~l~~~~~~vs~~l~~L~ 76 (143)
T 3oop_A 34 DVTPEQWSVLEGIE-ANEPISQKEIALWTKKDTPTVNRIVDVLL 76 (143)
T ss_dssp SSCHHHHHHHHHHH-HHSSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCcCHHHHHHHHCCCHhhHHHHHHHHH
Confidence 4666554 333333 23678999999999999999988876654
No 104
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=34.86 E-value=11 Score=35.00 Aligned_cols=43 Identities=7% Similarity=0.006 Sum_probs=36.9
Q ss_pred CCCCCHhhHHHHHHhhcccC--Ccchhhhhhcccccceeeehhhh
Q 046732 220 RNAIPVRQRVAVCIWRLATG--EPLRLVSKRFGLGISTCHKLVLE 262 (516)
Q Consensus 220 r~~l~~eekL~v~L~~La~G--~s~~~la~~Fgis~STvsrii~~ 262 (516)
..++|..++=.-.+..|.+| .++..+|..+|||++.|+|++.-
T Consensus 21 ~rplS~yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~ 65 (189)
T 3mky_B 21 YRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINT 65 (189)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHH
Confidence 45789999988888899877 89999999999999999998754
No 105
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=34.77 E-value=8.5 Score=35.04 Aligned_cols=63 Identities=19% Similarity=0.148 Sum_probs=43.7
Q ss_pred CCHhhHHHHHHhhccc--------------CCcchhhhhhcccccceeeehhhhhHHH-HHhhcc-cccccCCChhHHHh
Q 046732 223 IPVRQRVAVCIWRLAT--------------GEPLRLVSKRFGLGISTCHKLVLEVCTA-IRSVLM-PKYLQWPDDDALRK 286 (516)
Q Consensus 223 l~~eekL~v~L~~La~--------------G~s~~~la~~Fgis~STvsrii~~v~~a-L~~~L~-~~~I~~P~~ee~~~ 286 (516)
.++.++|+-+|..|+. ..+..+||...|+++.|++|++.++... +.. .. ...|..++.+.+..
T Consensus 137 ~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~-~~~~~~i~i~d~~~L~~ 215 (220)
T 2fmy_A 137 KDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKMGILE-RVNQRTLLLKDLQKLKE 215 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE-ESSSSEEEESCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE-EcCCCEEEEcCHHHHHH
Confidence 4788999999987753 4678999999999999999998886532 222 22 33444555444443
No 106
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=34.76 E-value=13 Score=29.48 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=25.8
Q ss_pred hhHHHHHHhhcc--cCCcchhhhhhcccccceeeehhhh
Q 046732 226 RQRVAVCIWRLA--TGEPLRLVSKRFGLGISTCHKLVLE 262 (516)
Q Consensus 226 eekL~v~L~~La--~G~s~~~la~~Fgis~STvsrii~~ 262 (516)
+++++-.|.-.+ ...+...||..+|+|++||.+.+..
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~ 50 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYS 50 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 455555555444 2467899999999999997665544
No 107
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=34.72 E-value=12 Score=32.20 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=30.7
Q ss_pred CCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732 223 IPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 223 l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
+++.+ .++..|+.-..+.+...|+..++++++||++++.....
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~ 88 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIK 88 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 44444 44455534456788999999999999999888766543
No 108
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=34.69 E-value=12 Score=34.31 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=34.0
Q ss_pred CCCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehh
Q 046732 220 RNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLV 260 (516)
Q Consensus 220 r~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii 260 (516)
|..++|.++.......+..|.+...|+..+|+|+++|++++
T Consensus 33 RedL~piE~A~a~~~L~~~G~t~eeiA~~lG~s~s~V~~~L 73 (178)
T 1r71_A 33 RNELTPREIADFIGRELAKGKKKGDIAKEIGKSPAFITQHV 73 (178)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34677777777777777789999999999999999988765
No 109
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=34.68 E-value=16 Score=30.50 Aligned_cols=43 Identities=12% Similarity=0.086 Sum_probs=30.2
Q ss_pred CCCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732 222 AIPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 222 ~l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.+++.+ .++..|+. ..+.+...|+..++++++||++++.....
T Consensus 30 ~l~~~~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 73 (139)
T 3bja_A 30 DISYVQFGVIQVLAK-SGKVSMSKLIENMGCVPSNMTTMIQRMKR 73 (139)
T ss_dssp TCCHHHHHHHHHHHH-SCSEEHHHHHHHCSSCCTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 355544 34444433 34678999999999999999888766543
No 110
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=34.58 E-value=18 Score=30.90 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=29.8
Q ss_pred CCCHhhH-HHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 222 AIPVRQR-VAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 222 ~l~~eek-L~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
.+++.+- ++..|+. ..+.+...|+..++++++||++++....
T Consensus 44 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le 86 (153)
T 2pex_A 44 DLTYPQYLVMLVLWE-TDERSVSEIGERLYLDSATLTPLLKRLQ 86 (153)
T ss_dssp TCCHHHHHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCcCHHHHHHHhCCCcccHHHHHHHHH
Confidence 4565554 4444433 4567899999999999999988776653
No 111
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=34.17 E-value=6 Score=30.24 Aligned_cols=22 Identities=9% Similarity=0.220 Sum_probs=19.0
Q ss_pred Ccchhhhhhcccccceeeehhh
Q 046732 240 EPLRLVSKRFGLGISTCHKLVL 261 (516)
Q Consensus 240 ~s~~~la~~Fgis~STvsrii~ 261 (516)
.+..+|+...|||.+||+++++
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 3678999999999999998763
No 112
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=34.05 E-value=13 Score=30.12 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=32.7
Q ss_pred CCCCCHhhHHHHHHhhcc--cCCcchhhhhhcccccceeeehhhhh
Q 046732 220 RNAIPVRQRVAVCIWRLA--TGEPLRLVSKRFGLGISTCHKLVLEV 263 (516)
Q Consensus 220 r~~l~~eekL~v~L~~La--~G~s~~~la~~Fgis~STvsrii~~v 263 (516)
-..+++.+.+.+.+.+-+ .|...++|+...+++.+||.+++...
T Consensus 15 ~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~L 60 (91)
T 2dk5_A 15 MKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNL 60 (91)
T ss_dssp CCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 346777776555554442 38999999999999999988777554
No 113
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=34.01 E-value=14 Score=33.11 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=44.8
Q ss_pred CCHhhHHHHHHhhccc-------------CCcchhhhhhcccccceeeehhhhhHHH-HHhhcccccccCCChhHHHhh
Q 046732 223 IPVRQRVAVCIWRLAT-------------GEPLRLVSKRFGLGISTCHKLVLEVCTA-IRSVLMPKYLQWPDDDALRKI 287 (516)
Q Consensus 223 l~~eekL~v~L~~La~-------------G~s~~~la~~Fgis~STvsrii~~v~~a-L~~~L~~~~I~~P~~ee~~~i 287 (516)
.+++++|+-+|..|+. ..+...||...|+++.||+|++.++... +.. .....|..++.+.+..+
T Consensus 117 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~-~~~~~i~i~d~~~L~~~ 194 (202)
T 2zcw_A 117 QRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAREGYIR-SGYGKIQLLDLKGLKEL 194 (202)
T ss_dssp CCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EETTEEEESCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE-eCCCEEEEeCHHHHHHH
Confidence 5788999999988753 2467889999999999999998886532 222 23444555555555443
No 114
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=33.81 E-value=12 Score=32.07 Aligned_cols=42 Identities=33% Similarity=0.266 Sum_probs=29.0
Q ss_pred CCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 223 IPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 223 l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
+++.+ .++..|+.-..+.+..+|+..++++++||++++....
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le 79 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELE 79 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 44444 3444444333456999999999999999988776653
No 115
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=33.76 E-value=9.7 Score=32.04 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=30.3
Q ss_pred CCHhh-HHHHHHhhcc-cCCcchhhhhhcccccceeeehhhhhHH
Q 046732 223 IPVRQ-RVAVCIWRLA-TGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 223 l~~ee-kL~v~L~~La-~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
+++.+ .++..|+.-. .+.+..+|+..++++++|+++++.....
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 44443 4444444433 3788999999999999999888776543
No 116
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=33.73 E-value=9.7 Score=31.11 Aligned_cols=36 Identities=6% Similarity=0.003 Sum_probs=27.4
Q ss_pred hHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 227 QRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 227 ekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
.+++..| ...+.+..+|+..+|++++||++.+....
T Consensus 24 ~~IL~~L--~~~~~~~~ela~~l~is~~tv~~~l~~L~ 59 (114)
T 2oqg_A 24 WEILTEL--GRADQSASSLATRLPVSRQAIAKHLNALQ 59 (114)
T ss_dssp HHHHHHH--HHSCBCHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4454444 34567899999999999999998887654
No 117
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=33.63 E-value=16 Score=31.06 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=30.8
Q ss_pred CCCHhhH-HHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732 222 AIPVRQR-VAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 222 ~l~~eek-L~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.+++.+- ++..|+. ..+.+..+|+..++++++||++++.....
T Consensus 37 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 80 (148)
T 3nrv_A 37 GIGMTEWRIISVLSS-ASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
T ss_dssp TCCHHHHHHHHHHHH-SSSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666554 3333333 34788999999999999999888776543
No 118
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=33.54 E-value=8.1 Score=31.63 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=22.4
Q ss_pred ccCCcchhhhhhcccccceeeehhhh
Q 046732 237 ATGEPLRLVSKRFGLGISTCHKLVLE 262 (516)
Q Consensus 237 a~G~s~~~la~~Fgis~STvsrii~~ 262 (516)
..+.+..+|+..+|||.+||++.++.
T Consensus 18 ~~~~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 18 ETKKTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHCCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 34578899999999999999998765
No 119
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=33.33 E-value=14 Score=33.51 Aligned_cols=43 Identities=9% Similarity=0.161 Sum_probs=34.8
Q ss_pred CCCHhhHHHHHHhhcccC-------------CcchhhhhhcccccceeeehhhhhH
Q 046732 222 AIPVRQRVAVCIWRLATG-------------EPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~G-------------~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
..++.++|+-+|..|+.. .+..+||...|+++.|++|++.++.
T Consensus 157 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~ 212 (230)
T 3iwz_A 157 FLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQ 212 (230)
T ss_dssp HCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 358889999999888642 3678999999999999988876654
No 120
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=33.26 E-value=16 Score=30.98 Aligned_cols=43 Identities=5% Similarity=0.067 Sum_probs=29.6
Q ss_pred CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
.+++.+-..+....-..+.+..+|+..++++++|+++++....
T Consensus 28 ~lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le 70 (145)
T 3g3z_A 28 DLNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLA 70 (145)
T ss_dssp TCCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555553333322334568999999999999999988776654
No 121
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=32.58 E-value=15 Score=30.91 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=28.8
Q ss_pred CCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732 223 IPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 223 l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
+++.+ .++..|+. ..+.+...|+..++++++||++++.....
T Consensus 35 l~~~~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 77 (142)
T 2bv6_A 35 LTYPQFLVLTILWD-ESPVNVKKVVTELALDTGTVSPLLKRMEQ 77 (142)
T ss_dssp CCHHHHHHHHHHHH-SSEEEHHHHHHHTTCCTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 45444 33333332 34578999999999999999887766543
No 122
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=32.46 E-value=9.4 Score=34.91 Aligned_cols=31 Identities=26% Similarity=0.187 Sum_probs=0.0
Q ss_pred hhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 234 WRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 234 ~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
.++..|.+...++..+|+|.+|+++++...-
T Consensus 153 ~l~~~G~s~~~Ia~~l~vs~~T~yr~l~~~~ 183 (193)
T 3plo_X 153 RLLAQGIPRKQVALIYDVALSTLYKKHPAKR 183 (193)
T ss_dssp -------------------------------
T ss_pred HHHHCCCCHHHHHHHHCcCHHHHHHHHhhhH
Confidence 3456899999999999999999999876543
No 123
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=32.31 E-value=14 Score=31.34 Aligned_cols=44 Identities=18% Similarity=0.047 Sum_probs=30.2
Q ss_pred CCCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732 222 AIPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 222 ~l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.+++.+ .++..|+.-..+.+...|+..+|++++||++++.....
T Consensus 32 ~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp HHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 344444 34444433245789999999999999999888766543
No 124
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=32.31 E-value=17 Score=30.85 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=24.5
Q ss_pred CCHhh-HHHHHHhhcc-cCCcchhhhhhcccccceeeehhhhhHH
Q 046732 223 IPVRQ-RVAVCIWRLA-TGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 223 l~~ee-kL~v~L~~La-~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
+++.+ .++..|+.-. .+.+..+|+..++++++|+++++.....
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEK 83 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 44444 3444444432 5788999999999999999988876543
No 125
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=32.30 E-value=14 Score=31.00 Aligned_cols=42 Identities=7% Similarity=0.002 Sum_probs=29.2
Q ss_pred CCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732 223 IPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 223 l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
+++.+ .++..|+. ..+.+...|+..++++++||++++.....
T Consensus 34 lt~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~~vs~~l~~Le~ 76 (142)
T 2fbi_A 34 LTEQQWRVIRILRQ-QGEMESYQLANQACILRPSMTGVLARLER 76 (142)
T ss_dssp CCHHHHHHHHHHHH-HCSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 44444 34444433 34678999999999999999888766543
No 126
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=31.93 E-value=9.5 Score=29.54 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=27.1
Q ss_pred HhhHHHHHHhhcccCCcchhhhhhcc----cccceeeehhhhh
Q 046732 225 VRQRVAVCIWRLATGEPLRLVSKRFG----LGISTCHKLVLEV 263 (516)
Q Consensus 225 ~eekL~v~L~~La~G~s~~~la~~Fg----is~STvsrii~~v 263 (516)
.+..++.+||. ..+.+..+|+..++ ++.+||++++...
T Consensus 10 ~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL 51 (82)
T 1p6r_A 10 AELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRL 51 (82)
T ss_dssp HHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 34456666766 55788999999986 6788887766554
No 127
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=31.83 E-value=18 Score=30.74 Aligned_cols=43 Identities=19% Similarity=0.085 Sum_probs=30.8
Q ss_pred CCCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732 222 AIPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 222 ~l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.+++.+ .++..|+. ..+.+...|+..++++++||++++.....
T Consensus 39 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 82 (150)
T 2rdp_A 39 PITPPQFVALQWLLE-EGDLTVGELSNKMYLACSTTTDLVDRMER 82 (150)
T ss_dssp SSCHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 455544 34444443 35789999999999999999888766543
No 128
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.71 E-value=14 Score=28.57 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=21.5
Q ss_pred CCcchhhhhhc-----ccccceeeehhhhhH
Q 046732 239 GEPLRLVSKRF-----GLGISTCHKLVLEVC 264 (516)
Q Consensus 239 G~s~~~la~~F-----gis~STvsrii~~v~ 264 (516)
+.+..+|+..+ ++|.+||+|.+..+.
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~ 63 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFD 63 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 56788999999 999999988776554
No 129
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=31.60 E-value=13 Score=35.44 Aligned_cols=43 Identities=7% Similarity=0.152 Sum_probs=32.5
Q ss_pred CCHhhHHHHHHhhccc---CCcchhhhhhcccccceeeehhhhhHH
Q 046732 223 IPVRQRVAVCIWRLAT---GEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 223 l~~eekL~v~L~~La~---G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
++.-++.+-.|..|+. +.+..+|+..+|+++||+++++.....
T Consensus 4 v~sl~r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~ 49 (249)
T 1mkm_A 4 MNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE 49 (249)
T ss_dssp CTTHHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3344555566666653 578999999999999999999877654
No 130
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=31.60 E-value=11 Score=33.21 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=30.9
Q ss_pred CCCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 222 AIPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 222 ~l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
.+++.+ .++..|+....+.+..+|+..++++++||++++....
T Consensus 50 glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le 93 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLE 93 (166)
T ss_dssp TCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHH
Confidence 455554 3444444445568999999999999999988776654
No 131
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=31.55 E-value=8.1 Score=28.46 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.0
Q ss_pred cccCCcchhhhhhcccccceeeehh
Q 046732 236 LATGEPLRLVSKRFGLGISTCHKLV 260 (516)
Q Consensus 236 La~G~s~~~la~~Fgis~STvsrii 260 (516)
...| ++..++...|+++++|++++
T Consensus 11 ~~~g-s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 11 EEHG-TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp HHTC-CHHHHHHHHTSCHHHHHHHH
T ss_pred HHcC-CHHHHHHHHCcCHHHHHHHH
Confidence 3467 99999999999999998876
No 132
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=31.28 E-value=3 Score=38.41 Aligned_cols=101 Identities=14% Similarity=0.078 Sum_probs=58.6
Q ss_pred CChhHHHHHcCCCHHHHHHHHHHhhcccccc-CCCCCCCCCHh-hHHHHHHhhccc-------------CCcchhhhhhc
Q 046732 185 YPEEEFKKWFRMRRQTFDMICEELNSVIAKE-DTTLRNAIPVR-QRVAVCIWRLAT-------------GEPLRLVSKRF 249 (516)
Q Consensus 185 ~~d~~Fk~~FRmsk~tF~~L~~~L~~~i~k~-~t~~r~~l~~e-ekL~v~L~~La~-------------G~s~~~la~~F 249 (516)
++-+.|...+.-.+.....++..+...+... .... ...++. ++|+-+|..++. ..+...||...
T Consensus 107 i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~l 185 (231)
T 3e97_A 107 LHREHFELILRRHPRVLWNLAEMLARRVTFLNDELI-AFGQNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMART 185 (231)
T ss_dssp ECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHH
T ss_pred EeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHh
Confidence 4556666666555554444444333211100 0000 123556 899999988763 35789999999
Q ss_pred ccccceeeehhhhhHHH-HHhhcccccccCCChhHHHhh
Q 046732 250 GLGISTCHKLVLEVCTA-IRSVLMPKYLQWPDDDALRKI 287 (516)
Q Consensus 250 gis~STvsrii~~v~~a-L~~~L~~~~I~~P~~ee~~~i 287 (516)
|+++.|++|++.++... +.. .....|...+.+.+..+
T Consensus 186 g~sr~tvsR~l~~L~~~g~I~-~~~~~i~i~d~~~L~~~ 223 (231)
T 3e97_A 186 SSSRETVSRVLKRLEAHNILE-VSPRSVTLLDLAALEAL 223 (231)
T ss_dssp TCCHHHHHHHHHHHHHTTSEE-ECSSCEEESCHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHCCcEE-ecCCEEEEeCHHHHHHH
Confidence 99999999988876532 222 23344555555555444
No 133
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=31.05 E-value=14 Score=29.04 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=18.7
Q ss_pred CCcchhhhhhcccccceeeehhhh
Q 046732 239 GEPLRLVSKRFGLGISTCHKLVLE 262 (516)
Q Consensus 239 G~s~~~la~~Fgis~STvsrii~~ 262 (516)
..+.++|+..||+|.+||.+.+..
T Consensus 24 ~psv~EIa~~lgvS~~TVrr~L~~ 47 (77)
T 2jt1_A 24 PVKTRDIADAAGLSIYQVRLYLEQ 47 (77)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHH
Confidence 345789999999999897766544
No 134
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=31.04 E-value=13 Score=33.88 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=35.3
Q ss_pred CCHhhHHHHHHhhccc--------------CCcchhhhhhcccccceeeehhhhhHH
Q 046732 223 IPVRQRVAVCIWRLAT--------------GEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 223 l~~eekL~v~L~~La~--------------G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.++.++|+-+|..|+. ..+...||...|+++.|++|++.++..
T Consensus 133 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~ 189 (222)
T 1ft9_A 133 HDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIK 189 (222)
T ss_dssp HHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 5788999999988762 257788999999999999998887653
No 135
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=30.88 E-value=10 Score=34.43 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=0.9
Q ss_pred CCCHhhHHHHHHhhccc-------CCcchhhhhhcccccceeeehhhhhH
Q 046732 222 AIPVRQRVAVCIWRLAT-------GEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~-------G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
..+++++|+.+|..++. ..+...||...|+++.|++|++.++.
T Consensus 140 ~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~ 189 (213)
T 1o5l_A 140 TKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPALSRVFQELE 189 (213)
T ss_dssp CC------------------------------------------------
T ss_pred hCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34677889888887762 45789999999999999999988764
No 136
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=30.84 E-value=67 Score=27.36 Aligned_cols=79 Identities=6% Similarity=-0.018 Sum_probs=47.1
Q ss_pred CCCChhHHHHHcCCCHHHHHHHHHHhhcc--cc-ccCCCC-CCCCCHhhHHHHHHhhcc--cCCcchhhhhhc-------
Q 046732 183 PDYPEEEFKKWFRMRRQTFDMICEELNSV--IA-KEDTTL-RNAIPVRQRVAVCIWRLA--TGEPLRLVSKRF------- 249 (516)
Q Consensus 183 ~~~~d~~Fk~~FRmsk~tF~~L~~~L~~~--i~-k~~t~~-r~~l~~eekL~v~L~~La--~G~s~~~la~~F------- 249 (516)
..++-.+.-..|++++.|+...+...... +. +..... ...++.+..-.+ +.++. ...+...|+..+
T Consensus 47 ~G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I-~~~~~~~~~~s~~~i~~~l~~~~~~~ 125 (149)
T 1k78_A 47 QGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKI-AEYKRQNPTMFAWEIRDRLLAERVCD 125 (149)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHH-HHHHHHCTTCCHHHHHHHHHHTTSSC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHH-HHHHHhCcchhHHHHHHHHHHhcccc
Confidence 35777889999999999998888765432 11 111111 234665433222 23333 235667777766
Q ss_pred -c--cccceeeehhhh
Q 046732 250 -G--LGISTCHKLVLE 262 (516)
Q Consensus 250 -g--is~STvsrii~~ 262 (516)
| +|.+||++++..
T Consensus 126 ~g~~~S~sTV~r~L~~ 141 (149)
T 1k78_A 126 NDTVPSVSSINRIIRT 141 (149)
T ss_dssp TTTSCCHHHHHHHHHC
T ss_pred cCCCcCHHHHHHHHHH
Confidence 5 677787776654
No 137
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=30.84 E-value=15 Score=35.35 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=36.2
Q ss_pred CCCHhhHHHHHHhhcc---cCCcchhhhhhcccccceeeehhhhhHH
Q 046732 222 AIPVRQRVAVCIWRLA---TGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 222 ~l~~eekL~v~L~~La---~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.++.-++.+-.|..|+ .+.+..+|+...|+++||+++++.....
T Consensus 18 ~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~ 64 (260)
T 2o0y_A 18 GVRSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA 64 (260)
T ss_dssp CCHHHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4666778888888886 3688999999999999999998877654
No 138
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=30.81 E-value=17 Score=30.63 Aligned_cols=41 Identities=22% Similarity=0.122 Sum_probs=29.4
Q ss_pred CCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 223 IPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 223 l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
+++.+ .++..|+. ..+.+...|+..++++++||++++....
T Consensus 31 l~~~~~~iL~~l~~-~~~~~~~~la~~l~~s~~tvs~~l~~L~ 72 (145)
T 2a61_A 31 ITPAQFDILQKIYF-EGPKRPGELSVLLGVAKSTVTGLVKRLE 72 (145)
T ss_dssp CCHHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 45444 34444443 4578999999999999999988776654
No 139
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=30.78 E-value=21 Score=30.60 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=28.6
Q ss_pred CCHhhH-HHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 223 IPVRQR-VAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 223 l~~eek-L~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
+++.+- ++..|+ -..+.+..+|+..++++++||++++....
T Consensus 41 lt~~~~~iL~~l~-~~~~~t~~ela~~l~i~~~tvs~~l~~Le 82 (155)
T 3cdh_A 41 LRVPEWRVLACLV-DNDAMMITRLAKLSLMEQSRMTRIVDQMD 82 (155)
T ss_dssp CCHHHHHHHHHHS-SCSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 454443 333333 23567899999999999999988776654
No 140
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=30.69 E-value=35 Score=29.69 Aligned_cols=42 Identities=10% Similarity=0.103 Sum_probs=27.4
Q ss_pred CCHhh-HHHHHHhhc-ccCCcchhhhhhcccccceeeehhhhhH
Q 046732 223 IPVRQ-RVAVCIWRL-ATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 223 l~~ee-kL~v~L~~L-a~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
+++.+ .++..|+.. ..+.+..+|+..++++++||++++....
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le 87 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLD 87 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 55444 344444444 2578999999999999999988876654
No 141
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=30.49 E-value=19 Score=30.69 Aligned_cols=40 Identities=13% Similarity=0.181 Sum_probs=29.3
Q ss_pred CCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 223 IPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 223 l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
+++.+ .++.+| -..+.+..+|+..++++++||++++....
T Consensus 36 lt~~q~~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le 76 (151)
T 3kp7_A 36 ISAEQSHVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLL 76 (151)
T ss_dssp CCHHHHHHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444 344444 55678899999999999999988776654
No 142
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=30.41 E-value=17 Score=34.76 Aligned_cols=44 Identities=14% Similarity=0.195 Sum_probs=35.5
Q ss_pred CCCHhhHHHHHHhhccc---CCcchhhhhhcccccceeeehhhhhHH
Q 046732 222 AIPVRQRVAVCIWRLAT---GEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~---G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.++.-++.+-.|..|+. +.+..+|+..+|+++||+++++.....
T Consensus 9 ~v~s~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~ 55 (257)
T 2g7u_A 9 YIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK 55 (257)
T ss_dssp CCHHHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45566777777888863 578999999999999999999877654
No 143
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=30.26 E-value=24 Score=28.54 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=18.1
Q ss_pred cchhhhhhcccccceeeehhhh
Q 046732 241 PLRLVSKRFGLGISTCHKLVLE 262 (516)
Q Consensus 241 s~~~la~~Fgis~STvsrii~~ 262 (516)
+.+.|+..||+|++||.+.+..
T Consensus 37 s~~eLa~~~~vSr~tvr~al~~ 58 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAV 58 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 5678999999999998776544
No 144
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=30.21 E-value=16 Score=32.61 Aligned_cols=65 Identities=14% Similarity=0.048 Sum_probs=45.0
Q ss_pred CCCHhhHHHHHHhhccc--C-----------CcchhhhhhcccccceeeehhhhhHHH-HHhhcccccccCCChhHHHhh
Q 046732 222 AIPVRQRVAVCIWRLAT--G-----------EPLRLVSKRFGLGISTCHKLVLEVCTA-IRSVLMPKYLQWPDDDALRKI 287 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~--G-----------~s~~~la~~Fgis~STvsrii~~v~~a-L~~~L~~~~I~~P~~ee~~~i 287 (516)
..++.++|+-+|..|+. | .+..+||...|+++.||+|++.++... +.. .....|...+.+.+..+
T Consensus 109 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~-~~~~~i~i~d~~~L~~~ 187 (195)
T 3b02_A 109 TGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRREGLIA-TAYRRVYLLDLAALERE 187 (195)
T ss_dssp SSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEE-EETTEEEECCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE-ecCCEEEEeCHHHHHHH
Confidence 46788999999988762 2 467889999999999999998887532 322 22344555555555443
No 145
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=30.20 E-value=35 Score=32.76 Aligned_cols=45 Identities=11% Similarity=0.091 Sum_probs=36.0
Q ss_pred CCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHH
Q 046732 221 NAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAI 267 (516)
Q Consensus 221 ~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL 267 (516)
..+++.++-.+.| ++.|.++..||...|||..||...+..+..-|
T Consensus 196 ~~Lt~re~~vl~~--~~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl 240 (265)
T 3qp6_A 196 MPLSQREYDIFHW--MSRGKTNWEIATILNISERTVKFHVANVIRKL 240 (265)
T ss_dssp CCCCHHHHHHHHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 4688888765554 47999999999999999999988877765544
No 146
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=30.13 E-value=16 Score=31.59 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=28.8
Q ss_pred CCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 223 IPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 223 l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
+++.+ .++..|+. ..+.+...|+..++++++||++++....
T Consensus 50 lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le 91 (162)
T 3cjn_A 50 LSTAKMRALAILSA-KDGLPIGTLGIFAVVEQSTLSRALDGLQ 91 (162)
T ss_dssp CCHHHHHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CCCCCHHHHHHHHCCChhHHHHHHHHHH
Confidence 44444 34444433 3567899999999999999988776654
No 147
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=30.12 E-value=18 Score=30.24 Aligned_cols=41 Identities=5% Similarity=0.076 Sum_probs=28.2
Q ss_pred CCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 223 IPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 223 l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
+++.+ .++..|+. ..+.+...|+..++++++||++++....
T Consensus 29 l~~~~~~iL~~l~~-~~~~~~~ela~~l~is~~~vs~~l~~L~ 70 (142)
T 3bdd_A 29 ISLTRYSILQTLLK-DAPLHQLALQERLQIDRAAVTRHLKLLE 70 (142)
T ss_dssp SCHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44443 33333332 3567899999999999999988776654
No 148
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=30.03 E-value=9.8 Score=30.40 Aligned_cols=28 Identities=7% Similarity=-0.010 Sum_probs=23.3
Q ss_pred cCCcchhhhhhcccccceeeehhhhhHH
Q 046732 238 TGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 238 ~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.+.+..+|+..+|+|++||++.+.....
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRR 62 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4568999999999999999988766543
No 149
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=29.91 E-value=15 Score=34.54 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=33.0
Q ss_pred CHhhHHHHHHhhcc-cCCcc--hhhhhhcccccceeeehhhhhH
Q 046732 224 PVRQRVAVCIWRLA-TGEPL--RLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 224 ~~eekL~v~L~~La-~G~s~--~~la~~Fgis~STvsrii~~v~ 264 (516)
+..+.++.+||.|. .|.+. ..|+..++++++|+++++.+..
T Consensus 6 ~~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le 49 (230)
T 1fx7_A 6 DTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRME 49 (230)
T ss_dssp SHHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45677788888886 46777 9999999999999988877654
No 150
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=29.87 E-value=16 Score=31.21 Aligned_cols=42 Identities=17% Similarity=0.337 Sum_probs=29.7
Q ss_pred CCCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 222 AIPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 222 ~l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
.+++.+ .++..|+. ..+.+..+|+..++++++||++++....
T Consensus 38 ~lt~~q~~iL~~l~~-~~~~~~~eLa~~l~~~~~~vs~~l~~L~ 80 (149)
T 4hbl_A 38 GITYSQYLVMLTLWE-ENPQTLNSIGRHLDLSSNTLTPMLKRLE 80 (149)
T ss_dssp TCCHHHHHHHHHHHH-SSSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 355544 33333332 4678899999999999999988776654
No 151
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=29.81 E-value=14 Score=31.13 Aligned_cols=41 Identities=10% Similarity=0.064 Sum_probs=28.7
Q ss_pred CCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 223 IPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 223 l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
+++.+ .++..|+. ..+.+..+|+..++++++||++++....
T Consensus 27 lt~~~~~iL~~l~~-~~~~t~~~la~~l~~s~~~vs~~l~~Le 68 (144)
T 1lj9_A 27 LTRGQYLYLVRVCE-NPGIIQEKIAELIKVDRTTAARAIKRLE 68 (144)
T ss_dssp CTTTHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CcCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 44434 34444443 3467899999999999999888776654
No 152
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=29.60 E-value=53 Score=32.06 Aligned_cols=169 Identities=8% Similarity=0.074 Sum_probs=86.8
Q ss_pred hHHHHHcC---CCHHHHHHHHHHhhcc---cc-ccCCCCCCCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehh
Q 046732 188 EEFKKWFR---MRRQTFDMICEELNSV---IA-KEDTTLRNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLV 260 (516)
Q Consensus 188 ~~Fk~~FR---msk~tF~~L~~~L~~~---i~-k~~t~~r~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii 260 (516)
..+.+.|+ +++.|+...+.....- +. ++..++...++. ++|.-.+ --....+++.|+..++||.+||++++
T Consensus 30 ~~l~~~~g~~~vs~~tv~~w~~r~~~g~~~l~~~~r~grp~~~~~-~~i~~~v-~~~~~~t~~~ia~~l~vs~~tV~r~L 107 (345)
T 3hot_A 30 RMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYED-AELQALL-DEDDAQTQKQLAEQLEVSQQAVSNRL 107 (345)
T ss_dssp HHHHHHTCSCSCCHHHHHHHHHHHTTCCCCCSCCCCCCCCCSSCH-HHHHHHH-HHCSCCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHhCCCccccCCCCCCCCCcccH-HHHHHHH-HhCccchHHHHHHHHCCCHHHHHHHH
Confidence 44556677 9999999888876531 11 112222234444 3333222 23345678999999999999999888
Q ss_pred hhhHHHHHhhcccccccC-C---ChhH---HHhhHHHHHh---hhCCCccccCCCceeeEEeCCCcccccccccc-----
Q 046732 261 LEVCTAIRSVLMPKYLQW-P---DDDA---LRKIKDEFEV---ISGIPNVVGSMYTTHVPIIAPKISVAAYFNKR----- 325 (516)
Q Consensus 261 ~~v~~aL~~~L~~~~I~~-P---~~ee---~~~i~~~F~~---~~gfP~~vGaIDgThIpI~~P~~~~~~y~n~~----- 325 (516)
++.- +....-.| | +... ....+..... ...+++-+-++|-+.+....+... ..|..+
T Consensus 108 ~~~g------~~~k~~~~~~~~l~~~~~~~r~~~~~~~l~~~~~~~~~~~Iv~~DE~~~~~~~~~~~--~~w~~~g~~~~ 179 (345)
T 3hot_A 108 REMG------KIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWIFFVNPKRK--KSYVDPGQPAT 179 (345)
T ss_dssp HHTT------CEEEECCEESSCCCHHHHHHHHHHHHHHHHHHHHSCCGGGEEEEEEEEEESCCCCCC--EEEECSSSCCC
T ss_pred HHhC------CeeeccccccccCChhhhhhhHHHHHHHHHhhCCcchHHhhhcccceeEEecCccce--eeeccCCCCCC
Confidence 7631 11111111 3 2211 1112222211 124667777889998775422211 111110
Q ss_pred cccccCCcccceeecceecCCCCeeccccCCCCCCCChhHhh
Q 046732 326 HTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLE 367 (516)
Q Consensus 326 ~~~~n~K~~~Si~vq~V~D~~g~fi~v~~g~pGs~hDs~V~~ 367 (516)
.+.....+..++.+.++.+..|.+.+....-.|++ ++..+.
T Consensus 180 ~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~-~~~~y~ 220 (345)
T 3hot_A 180 STARPNRFGKKTMLCVWWDQSGVIYYELLKPGETV-NAARYQ 220 (345)
T ss_dssp CEECCCTTCCEEEEEEEEESSSEEEEEEECSSCCC-CHHHHH
T ss_pred CCcCccCcCCcEEEEEEEcccCceeeEecCCCCcc-cHHHHH
Confidence 00000122346778888888896655554422344 455544
No 153
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=29.49 E-value=21 Score=29.73 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=30.3
Q ss_pred CCCHhhH-HHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732 222 AIPVRQR-VAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 222 ~l~~eek-L~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.+++.+. ++..|+. ..+.+...|+..++++++||++++.....
T Consensus 31 ~lt~~~~~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~ 74 (138)
T 1jgs_A 31 DITAAQFKVLCSIRC-AACITPVELKKVLSVDLGALTRMLDRLVC 74 (138)
T ss_dssp TSCHHHHHHHHHHHH-HSSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-cCCCCHHHHHHHHCCChHHHHHHHHHHHH
Confidence 4555554 3334432 35678999999999999999888776543
No 154
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=29.43 E-value=14 Score=35.10 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=31.8
Q ss_pred CHhhHHHHHHhhccc---CCcchhhhhhcccccceeeehhhhhHH
Q 046732 224 PVRQRVAVCIWRLAT---GEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 224 ~~eekL~v~L~~La~---G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
+.-++.+-.|..|+. +.+..+|+..+|+++||+++++.....
T Consensus 3 ~sl~r~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~ 47 (241)
T 2xrn_A 3 QVIARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEE 47 (241)
T ss_dssp CHHHHHHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344566666666653 468999999999999999998876543
No 155
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=29.33 E-value=17 Score=30.97 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=28.9
Q ss_pred CCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 223 IPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 223 l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
+++.+ .++..|+. ..+.+..+|+..++++++|+++++....
T Consensus 38 lt~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~~vs~~l~~Le 79 (152)
T 3bj6_A 38 VTVGQRAILEGLSL-TPGATAPQLGAALQMKRQYISRILQEVQ 79 (152)
T ss_dssp CCHHHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45444 34444433 3478899999999999999988776654
No 156
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=29.23 E-value=20 Score=30.80 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=28.9
Q ss_pred CCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 223 IPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 223 l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
+++.+ .++..|+. ..+.+..+|+..++++++||++++....
T Consensus 47 lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le 88 (162)
T 2fa5_A 47 MAIPEWRVITILAL-YPGSSASEVSDRTAMDKVAVSRAVARLL 88 (162)
T ss_dssp CCHHHHHHHHHHHH-STTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34333 34444444 4577889999999999999988776654
No 157
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=29.00 E-value=24 Score=31.36 Aligned_cols=43 Identities=9% Similarity=0.120 Sum_probs=31.2
Q ss_pred CCHhh-HHHHHHhhccc--CCcchhhhhhcccccceeeehhhhhHH
Q 046732 223 IPVRQ-RVAVCIWRLAT--GEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 223 l~~ee-kL~v~L~~La~--G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
+++.+ .++..|+.-.. |.+...|+..++++++||++++.....
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 112 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLE 112 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444 45555554433 389999999999999999998877654
No 158
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=28.96 E-value=14 Score=31.01 Aligned_cols=43 Identities=14% Similarity=0.046 Sum_probs=30.4
Q ss_pred CCCHhh-HHHHHHhhcc-cCCcchhhhhhcccccceeeehhhhhH
Q 046732 222 AIPVRQ-RVAVCIWRLA-TGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 222 ~l~~ee-kL~v~L~~La-~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
.+++.+ .++..|+.-. .+.+..+|+..++++++|+++++....
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le 78 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILS 78 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 355544 4555554421 567899999999999999988877654
No 159
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=28.93 E-value=27 Score=30.06 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=29.4
Q ss_pred CCCHhhH-HHHHHhhccc-CCcchhhhhhcccccceeeehhhhhH
Q 046732 222 AIPVRQR-VAVCIWRLAT-GEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 222 ~l~~eek-L~v~L~~La~-G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
.++..+- ++..|+.-.. +.+..+|+..++++++|+++++....
T Consensus 32 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le 76 (147)
T 4b8x_A 32 GLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLV 76 (147)
T ss_dssp TCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3555553 4444433333 36889999999999999988876654
No 160
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=28.84 E-value=25 Score=32.02 Aligned_cols=102 Identities=16% Similarity=0.127 Sum_probs=57.8
Q ss_pred CChhHHHHHcCCCHHHHHHHHHHhhccccccC--CCCCCCCCHhhHHHHHHhhcc-------------cCCcchhhhhhc
Q 046732 185 YPEEEFKKWFRMRRQTFDMICEELNSVIAKED--TTLRNAIPVRQRVAVCIWRLA-------------TGEPLRLVSKRF 249 (516)
Q Consensus 185 ~~d~~Fk~~FRmsk~tF~~L~~~L~~~i~k~~--t~~r~~l~~eekL~v~L~~La-------------~G~s~~~la~~F 249 (516)
++-+.|...+.-.+.....++..+...+.... ...-...++.++|+-+|..|+ -..+..+||...
T Consensus 111 i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~l 190 (232)
T 2gau_A 111 IPVEAIEALLKGNTSFCRYFLKALAKELGYAERRTVTLTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLS 190 (232)
T ss_dssp EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHT
T ss_pred EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHh
Confidence 34456666555555444444443332211000 000123578899999886543 235778999999
Q ss_pred ccccceeeehhhhhHHH-HHhhcccccccCCChhHHHhh
Q 046732 250 GLGISTCHKLVLEVCTA-IRSVLMPKYLQWPDDDALRKI 287 (516)
Q Consensus 250 gis~STvsrii~~v~~a-L~~~L~~~~I~~P~~ee~~~i 287 (516)
|+++.|++|++.++... +.. .....|...+.+.+..+
T Consensus 191 g~sr~tvsR~l~~l~~~g~I~-~~~~~i~i~d~~~L~~~ 228 (232)
T 2gau_A 191 NMTVSNAIRTLSTFVSERMLA-LDGKRIKIIDCDRLQKT 228 (232)
T ss_dssp TSCHHHHHHHHHHHHHTTSEE-EETTEEEESCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEe-eCCCEEEEeCHHHHHHH
Confidence 99999999998886532 222 22344555665555544
No 161
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=28.68 E-value=16 Score=30.80 Aligned_cols=43 Identities=12% Similarity=0.188 Sum_probs=30.0
Q ss_pred CCCHhhH-HHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732 222 AIPVRQR-VAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 222 ~l~~eek-L~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.+++.+. ++..|+. ..+.+...|+..++++++||++++.....
T Consensus 37 ~l~~~~~~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~ 80 (147)
T 1z91_A 37 NITYPQYLALLLLWE-HETLTVKKMGEQLYLDSGTLTPMLKRMEQ 80 (147)
T ss_dssp CCCHHHHHHHHHHHH-HSEEEHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCcCcHHHHHHHHHH
Confidence 4555443 4444433 34678999999999999999887766543
No 162
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=28.60 E-value=17 Score=30.98 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=29.4
Q ss_pred CCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 223 IPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 223 l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
+++.+ .++..|+. ..+.+..+|+..++++++||++++....
T Consensus 39 lt~~~~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le 80 (154)
T 2qww_A 39 LTIQQLAMINVIYS-TPGISVADLTKRLIITGSSAAANVDGLI 80 (154)
T ss_dssp CCHHHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55544 34444443 3567899999999999999988776654
No 163
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=28.56 E-value=15 Score=31.11 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=29.1
Q ss_pred CCCHhhH-HHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 222 AIPVRQR-VAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 222 ~l~~eek-L~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
.+++.+- ++..|+ -..+.+..+|+..++++++|+++++....
T Consensus 33 glt~~q~~vL~~l~-~~~~~t~~eLa~~l~~~~~tvs~~l~~L~ 75 (140)
T 3hsr_A 33 DLTYTGYIVLMAIE-NDEKLNIKKLGERVFLDSGTLTPLLKKLE 75 (140)
T ss_dssp TCCHHHHHHHHHSC-TTCEEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 3555553 333332 23567899999999999999988876654
No 164
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=28.53 E-value=16 Score=33.14 Aligned_cols=81 Identities=10% Similarity=0.129 Sum_probs=49.2
Q ss_pred CChhHHHHHcCCCHHHHHHHHHHhhccccccC--CCCCCCCCHhhHHHHHHhhccc-----------CCcchhhhhhccc
Q 046732 185 YPEEEFKKWFRMRRQTFDMICEELNSVIAKED--TTLRNAIPVRQRVAVCIWRLAT-----------GEPLRLVSKRFGL 251 (516)
Q Consensus 185 ~~d~~Fk~~FRmsk~tF~~L~~~L~~~i~k~~--t~~r~~l~~eekL~v~L~~La~-----------G~s~~~la~~Fgi 251 (516)
++-+.|...+.-.+..-..++..+...+.... .......++.++|+-.|..++. ..+...||...|+
T Consensus 111 i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~ 190 (227)
T 3dkw_A 111 FSNKAYLRQLQDNTPLALALLAKLSTRLHQRIDEIETLSLKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSI 190 (227)
T ss_dssp EESHHHHHHHSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTS
T ss_pred EeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCC
Confidence 34466666666665544444444433221100 0001124678899888866543 3567899999999
Q ss_pred ccceeeehhhhhHH
Q 046732 252 GISTCHKLVLEVCT 265 (516)
Q Consensus 252 s~STvsrii~~v~~ 265 (516)
++.|++|++.++..
T Consensus 191 sr~tvsR~l~~l~~ 204 (227)
T 3dkw_A 191 QPETFSRIMHRLGD 204 (227)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998877643
No 165
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=28.44 E-value=20 Score=29.25 Aligned_cols=26 Identities=4% Similarity=0.028 Sum_probs=21.8
Q ss_pred CCcchhhhhhcccccceeeehhhhhH
Q 046732 239 GEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 239 G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
..+...|+..+|+|++||++.+....
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L~ 58 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLLE 58 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46889999999999999888776543
No 166
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=28.08 E-value=19 Score=30.96 Aligned_cols=43 Identities=5% Similarity=-0.001 Sum_probs=29.8
Q ss_pred CCCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732 222 AIPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 222 ~l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.+++.+ .++.+|+. ..+.+..+|+..++++++||++++.....
T Consensus 41 ~lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~ 84 (154)
T 2eth_A 41 DMKTTELYAFLYVAL-FGPKKMKEIAEFLSTTKSNVTNVVDSLEK 84 (154)
T ss_dssp HSBHHHHHHHHHHHH-HCCBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444 34444443 34789999999999999999887766543
No 167
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=27.75 E-value=28 Score=30.16 Aligned_cols=27 Identities=37% Similarity=0.420 Sum_probs=22.8
Q ss_pred cCCcchhhhhhcccccceeeehhhhhH
Q 046732 238 TGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 238 ~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
...++.+|+..+|+|.+||++.+.+..
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L~ 46 (151)
T 2cyy_A 20 GKAPLREISKITGLAESTIHERIRKLR 46 (151)
T ss_dssp TTCCHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457899999999999999988776653
No 168
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=27.73 E-value=16 Score=35.13 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=35.6
Q ss_pred CCCHhhHHHHHHhhccc---CCcchhhhhhcccccceeeehhhhhHH
Q 046732 222 AIPVRQRVAVCIWRLAT---GEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~---G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.++.-++.+-.|..|+. +.+..+|+...|+++||+++++.....
T Consensus 16 ~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~ 62 (265)
T 2ia2_A 16 YVQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVE 62 (265)
T ss_dssp CCHHHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45666777777888863 577999999999999999999877654
No 169
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=27.55 E-value=28 Score=29.73 Aligned_cols=42 Identities=26% Similarity=0.427 Sum_probs=27.0
Q ss_pred CCCCHhhHHHHHHhh------cccCC---cchhhhhhcccccceeeehhhh
Q 046732 221 NAIPVRQRVAVCIWR------LATGE---PLRLVSKRFGLGISTCHKLVLE 262 (516)
Q Consensus 221 ~~l~~eekL~v~L~~------La~G~---s~~~la~~Fgis~STvsrii~~ 262 (516)
..+|.-+||.-.|.. |.-|. +-+.|+..||||++||.+.+..
T Consensus 11 s~~PlY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~ 61 (134)
T 4ham_A 11 SQLPIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQE 61 (134)
T ss_dssp SSSCHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHH
Confidence 345656655555533 44554 3468999999999997654433
No 170
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=27.49 E-value=17 Score=34.34 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=34.2
Q ss_pred CCCHhhHHHHHHhhccc-------------CCcchhhhhhcccccceeeehhhhhH
Q 046732 222 AIPVRQRVAVCIWRLAT-------------GEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~-------------G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
..++.++|+-.|..|+. ..+...||...|+++.||+|++.++.
T Consensus 187 ~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~ 242 (260)
T 3kcc_A 187 FLLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLE 242 (260)
T ss_dssp HCCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 35788999999887753 23568899999999999998877654
No 171
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=27.16 E-value=16 Score=32.88 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=29.9
Q ss_pred CCHhh-HHHHHHhhc-ccCCcchhhhhhcccccceeeehhhhh
Q 046732 223 IPVRQ-RVAVCIWRL-ATGEPLRLVSKRFGLGISTCHKLVLEV 263 (516)
Q Consensus 223 l~~ee-kL~v~L~~L-a~G~s~~~la~~Fgis~STvsrii~~v 263 (516)
+++.+ .++.+|+.. ..+.+...|+..++++++||++++...
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~L 81 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANL 81 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 55544 444555544 357899999999999999998876554
No 172
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=26.93 E-value=15 Score=30.61 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=26.9
Q ss_pred hHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 227 QRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 227 ekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
.+++..|. ..+.+..+|+..+|+|++||++.+....
T Consensus 21 ~~Il~~L~--~~~~~~~eLa~~l~is~~tvs~hL~~L~ 56 (118)
T 3f6o_A 21 RAVLGRLS--RGPATVSELAKPFDMALPSFMKHIHFLE 56 (118)
T ss_dssp HHHHHHHH--TCCEEHHHHHTTCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 34444443 4567899999999999999998886654
No 173
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=26.64 E-value=16 Score=31.21 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=29.2
Q ss_pred CCCHhhH-HHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 222 AIPVRQR-VAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 222 ~l~~eek-L~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
.+++.+. ++..|+. ..+.+...|+..++++++||++++....
T Consensus 34 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le 76 (155)
T 1s3j_A 34 GVTPAQLFVLASLKK-HGSLKVSEIAERMEVKPSAVTLMADRLE 76 (155)
T ss_dssp TCCHHHHHHHHHHHH-HSEEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3555443 4444433 3467899999999999999988776654
No 174
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=26.38 E-value=18 Score=30.21 Aligned_cols=28 Identities=11% Similarity=-0.066 Sum_probs=23.2
Q ss_pred ccCCcchhhhhhcccccceeeehhhhhH
Q 046732 237 ATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 237 a~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
..+.+..+|+..+|++++||++.+....
T Consensus 32 ~~~~~~~eLa~~lgis~stvs~~L~~L~ 59 (118)
T 2jsc_A 32 DGVCYPGQLAAHLGLTRSNVSNHLSCLR 59 (118)
T ss_dssp TTCCSTTTHHHHHSSCHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3457889999999999999998876653
No 175
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=26.18 E-value=13 Score=29.30 Aligned_cols=28 Identities=11% Similarity=0.109 Sum_probs=23.7
Q ss_pred cCCcchhhhhhcccccceeeehhhhhHH
Q 046732 238 TGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 238 ~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.+.+...|+..+|++++|+++.+.....
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~ 56 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLER 56 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4678999999999999999988876544
No 176
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=26.06 E-value=17 Score=31.37 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=28.3
Q ss_pred hHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732 227 QRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 227 ekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
-.++..|+. ..+.+..+|+..++++++|+++++.....
T Consensus 53 ~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 90 (159)
T 3s2w_A 53 FPFLMRLYR-EDGINQESLSDYLKIDKGTTARAIQKLVD 90 (159)
T ss_dssp HHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444543 36788999999999999999888776543
No 177
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=25.97 E-value=33 Score=28.83 Aligned_cols=28 Identities=7% Similarity=0.050 Sum_probs=23.9
Q ss_pred cCCcchhhhhhcccccceeeehhhhhHH
Q 046732 238 TGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 238 ~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.+.+...++..+|++++||++.+.....
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578999999999999999998876654
No 178
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=25.48 E-value=13 Score=30.76 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=30.5
Q ss_pred CCHhh-HHHHHHhhcccCCcchhhhhhcc----cccceeeehhhhhHH
Q 046732 223 IPVRQ-RVAVCIWRLATGEPLRLVSKRFG----LGISTCHKLVLEVCT 265 (516)
Q Consensus 223 l~~ee-kL~v~L~~La~G~s~~~la~~Fg----is~STvsrii~~v~~ 265 (516)
+++.+ .++.+|+. ..+.+..+|+..++ ++++||++++.....
T Consensus 8 lt~~~~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~ 54 (123)
T 1okr_A 8 ISSAEWEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYK 54 (123)
T ss_dssp CCHHHHHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHH
Confidence 44443 45555655 56788999999998 789999888877653
No 179
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=25.47 E-value=30 Score=32.33 Aligned_cols=51 Identities=12% Similarity=0.244 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHhhccccccCCCCCCCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhh
Q 046732 196 MRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLE 262 (516)
Q Consensus 196 msk~tF~~L~~~L~~~i~k~~t~~r~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~ 262 (516)
|++...+.+.+.|...|..........+|.+ +.|+..||||+++|...+..
T Consensus 1 m~~~l~~~v~~~L~~~I~~g~l~pG~~LpsE----------------~~La~~lgVSRtpVREAL~~ 51 (239)
T 2di3_A 1 MSVKAHESVMDWVTEELRSGRLKIGDHLPSE----------------RALSETLGVSRSSLREALRV 51 (239)
T ss_dssp -CHHHHHHHHHHHHHHHHHTSSCTTCBCCCH----------------HHHHHHHTCCHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhCCCCCCCcCCCH----------------HHHHHHHCCCHHHHHHHHHH
Confidence 5666666677776665543221112234333 46889999999997555443
No 180
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=24.96 E-value=19 Score=34.50 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=33.1
Q ss_pred CHhhHHHHHHhhccc---CCcchhhhhhcccccceeeehhhhhHH
Q 046732 224 PVRQRVAVCIWRLAT---GEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 224 ~~eekL~v~L~~La~---G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
..-++.+-.|..|+. +.+..+|+...|+++||++|++.....
T Consensus 3 ~sl~Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~ 47 (260)
T 3r4k_A 3 GTVSKALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQE 47 (260)
T ss_dssp CHHHHHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 445666777777774 467999999999999999998877654
No 181
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=24.92 E-value=20 Score=28.77 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=23.3
Q ss_pred cCCcchhhhhhcccccceeeehhhhhHH
Q 046732 238 TGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 238 ~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.+.+..+|+..+|+|++||++.+.....
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRE 62 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578999999999999999888766543
No 182
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=24.87 E-value=22 Score=30.51 Aligned_cols=22 Identities=5% Similarity=-0.085 Sum_probs=16.6
Q ss_pred cchhhhhhcccccceeeehhhh
Q 046732 241 PLRLVSKRFGLGISTCHKLVLE 262 (516)
Q Consensus 241 s~~~la~~Fgis~STvsrii~~ 262 (516)
+.+.|+..||||++||.+.+..
T Consensus 30 se~~La~~~gvSr~tVr~Al~~ 51 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTL 51 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3467899999999997665544
No 183
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=24.83 E-value=19 Score=27.82 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.5
Q ss_pred ccCCcchhhhhhcccccceeeehh
Q 046732 237 ATGEPLRLVSKRFGLGISTCHKLV 260 (516)
Q Consensus 237 a~G~s~~~la~~Fgis~STvsrii 260 (516)
..|.++..||...|+|++|++++.
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~ 43 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANAL 43 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 678999999999999999988664
No 184
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=24.76 E-value=19 Score=29.45 Aligned_cols=28 Identities=4% Similarity=-0.035 Sum_probs=23.1
Q ss_pred ccCCcchhhhhhc-ccccceeeehhhhhH
Q 046732 237 ATGEPLRLVSKRF-GLGISTCHKLVLEVC 264 (516)
Q Consensus 237 a~G~s~~~la~~F-gis~STvsrii~~v~ 264 (516)
..+.++.+|+... |++++|+++.+....
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le 53 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELE 53 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3458899999999 999999988776643
No 185
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=24.70 E-value=27 Score=30.18 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.0
Q ss_pred cCCcchhhhhhcccccceeeehhhhh
Q 046732 238 TGEPLRLVSKRFGLGISTCHKLVLEV 263 (516)
Q Consensus 238 ~G~s~~~la~~Fgis~STvsrii~~v 263 (516)
...++..|+..+|+|++||++.+.+.
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L 45 (150)
T 2w25_A 20 GRATLSELATRAGLSVSAVQSRVRRL 45 (150)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45789999999999999988776554
No 186
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=24.69 E-value=21 Score=35.14 Aligned_cols=34 Identities=9% Similarity=0.117 Sum_probs=27.8
Q ss_pred HHHHhhcccCCcchhhhhhcccccceeeehhhhh
Q 046732 230 AVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEV 263 (516)
Q Consensus 230 ~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v 263 (516)
-++..|+..+.+..+|+..||||++||+|.+...
T Consensus 12 ~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l 45 (315)
T 2w48_A 12 KIAQLYYEQDMTQAQIARELGIYRTTISRLLKRG 45 (315)
T ss_dssp HHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3455566788999999999999999998887653
No 187
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=24.59 E-value=17 Score=32.03 Aligned_cols=37 Identities=8% Similarity=0.091 Sum_probs=27.5
Q ss_pred hHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732 227 QRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 227 ekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.+++..|. ..+.+...|+..+|++++||++.+.....
T Consensus 61 ~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~ 97 (151)
T 3f6v_A 61 RRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTE 97 (151)
T ss_dssp HHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34444443 45678999999999999999988866543
No 188
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=24.44 E-value=27 Score=29.98 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=21.9
Q ss_pred cCCcchhhhhhcccccceeeehhhhh
Q 046732 238 TGEPLRLVSKRFGLGISTCHKLVLEV 263 (516)
Q Consensus 238 ~G~s~~~la~~Fgis~STvsrii~~v 263 (516)
...++.+|+..+|+|++||++.+...
T Consensus 18 ~~~s~~ela~~lg~s~~tv~~~l~~L 43 (144)
T 2cfx_A 18 SRLSMRELGRKIKLSPPSVTERVRQL 43 (144)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45789999999999999988776554
No 189
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=24.40 E-value=20 Score=31.10 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=29.3
Q ss_pred CCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 223 IPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 223 l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
+++.+ .++..|+. ..+.+..+|+..++++++||++++....
T Consensus 51 lt~~q~~vL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~Le 92 (161)
T 3e6m_A 51 LPTPKLRLLSSLSA-YGELTVGQLATLGVMEQSTTSRTVDQLV 92 (161)
T ss_dssp CCHHHHHHHHHHHH-HSEEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444 34444433 3578899999999999999988876654
No 190
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=24.34 E-value=30 Score=29.78 Aligned_cols=26 Identities=8% Similarity=0.034 Sum_probs=22.0
Q ss_pred CCcchhhhhhcccccceeeehhhhhH
Q 046732 239 GEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 239 G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
..++.+|+..+|+|++||++.+....
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~ 42 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLE 42 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47899999999999999988776543
No 191
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=24.32 E-value=18 Score=30.98 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=29.4
Q ss_pred hhHHHHHHhhcccCCcchhhhhhcc----cccceeeehhhhhH
Q 046732 226 RQRVAVCIWRLATGEPLRLVSKRFG----LGISTCHKLVLEVC 264 (516)
Q Consensus 226 eekL~v~L~~La~G~s~~~la~~Fg----is~STvsrii~~v~ 264 (516)
+..|+.+||....+.+..+|+..++ ++.+||++++....
T Consensus 11 e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe 53 (138)
T 2g9w_A 11 ERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLA 53 (138)
T ss_dssp HHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 4456666766556788999999997 89999887776654
No 192
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=24.31 E-value=19 Score=26.14 Aligned_cols=35 Identities=11% Similarity=-0.065 Sum_probs=24.3
Q ss_pred hHHHHHHhhcc--cCCcchhhhhhc-----ccccceeeehhh
Q 046732 227 QRVAVCIWRLA--TGEPLRLVSKRF-----GLGISTCHKLVL 261 (516)
Q Consensus 227 ekL~v~L~~La--~G~s~~~la~~F-----gis~STvsrii~ 261 (516)
++..+.+..|. ...+..+|+..+ +||.+||+|.+.
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 34444343443 346678899999 999999988776
No 193
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=24.30 E-value=14 Score=28.17 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=19.1
Q ss_pred Ccchhhhhhcccccceeeehh
Q 046732 240 EPLRLVSKRFGLGISTCHKLV 260 (516)
Q Consensus 240 ~s~~~la~~Fgis~STvsrii 260 (516)
.++..+|..+||++++||+++
T Consensus 14 ~sq~~~A~~Lgvsq~aVS~~~ 34 (65)
T 2cw1_A 14 KNQEYAARALGLSQKLIEEVL 34 (65)
T ss_dssp SCHHHHHHHSSSCHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHH
Confidence 399999999999999998865
No 194
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=24.25 E-value=19 Score=28.94 Aligned_cols=33 Identities=9% Similarity=0.064 Sum_probs=23.8
Q ss_pred HHHHhhcccCCcchhhhhhcccccceeeehhhhh
Q 046732 230 AVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEV 263 (516)
Q Consensus 230 ~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v 263 (516)
...|..|+. ..+..+|+..||+.|||+|+-...
T Consensus 16 s~iL~~La~-~gQ~~vAe~~GvdeStISR~k~~~ 48 (83)
T 1zs4_A 16 SALLNKIAM-LGTEKTAEAVGVDKSQISRWKRDW 48 (83)
T ss_dssp HHHHHHHHH-HCHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHH-HhhHHHHHHhCCCHHHHhhhhhhH
Confidence 334445544 467899999999999999964433
No 195
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=24.00 E-value=23 Score=29.83 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=21.9
Q ss_pred cchhhhhhcccccceeeehhhhhHH
Q 046732 241 PLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 241 s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
+..+|+..++++++|+++++.....
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~ 76 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEA 76 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHH
Confidence 9999999999999999888776544
No 196
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=23.97 E-value=22 Score=31.15 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=29.9
Q ss_pred CCCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 222 AIPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 222 ~l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
.+++.+ .++..|+. ..+.+..+|+..++++++||++++....
T Consensus 42 ~lt~~~~~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~Le 84 (168)
T 2nyx_A 42 NITIPQFRTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLV 84 (168)
T ss_dssp SCCHHHHHHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 355444 34444443 3578999999999999999988776654
No 197
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=23.83 E-value=30 Score=31.78 Aligned_cols=42 Identities=10% Similarity=0.172 Sum_probs=30.2
Q ss_pred CCCHhh-HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732 222 AIPVRQ-RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 222 ~l~~ee-kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
.+++.+ .++.+|+. ..+.+...|+..++++++||++++....
T Consensus 45 gLt~~q~~iL~~L~~-~~~~t~~eLa~~l~i~~stvs~~l~~Le 87 (207)
T 2fxa_A 45 DLNINEHHILWIAYQ-LNGASISEIAKFGVMHVSTAFNFSKKLE 87 (207)
T ss_dssp TCCHHHHHHHHHHHH-HTSEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555 34444443 3578999999999999999888776543
No 198
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=23.76 E-value=27 Score=29.65 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=22.3
Q ss_pred cCCcchhhhhhcccccceeeehhhhhH
Q 046732 238 TGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 238 ~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
...++..|+..+|+|++|+++.+.+..
T Consensus 17 ~~~~~~ela~~lg~s~~tv~~~l~~L~ 43 (141)
T 1i1g_A 17 ARTPFTEIAKKLGISETAVRKRVKALE 43 (141)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 357899999999999999888776553
No 199
>1pjn_A Histone-binding protein N1/N2; importin alpha/karyopherin alpha, nuclear localization sequence (NLS) recognition, bipartite NLS; 2.50A {Synthetic}
Probab=23.59 E-value=21 Score=22.23 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=9.8
Q ss_pred HhhhhccccCCCCC
Q 046732 9 RKRKRKDEQVGYED 22 (516)
Q Consensus 9 ~~~~~~~~~~~~~~ 22 (516)
|||||+.++.+..|
T Consensus 1 RKKrkp~Ees~~~d 14 (26)
T 1pjn_A 1 RKKRKTEEESPLKD 14 (26)
T ss_dssp CCCCCCSSCCSCCC
T ss_pred CCCcCCccccchHH
Confidence 67788777766555
No 200
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=23.58 E-value=16 Score=27.67 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=23.0
Q ss_pred hhcccCCcchhhhhhcccccceeeehh
Q 046732 234 WRLATGEPLRLVSKRFGLGISTCHKLV 260 (516)
Q Consensus 234 ~~La~G~s~~~la~~Fgis~STvsrii 260 (516)
.+-..|.++.++|...|||.+|++++-
T Consensus 19 ~R~~~gltq~elA~~~gvs~~tis~~E 45 (73)
T 3fmy_A 19 VRKKLSLTQKEASEIFGGGVNAFSRYE 45 (73)
T ss_dssp HHHHTTCCHHHHHHHHCSCTTHHHHHH
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 345689999999999999999988764
No 201
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=23.51 E-value=19 Score=33.18 Aligned_cols=65 Identities=8% Similarity=0.056 Sum_probs=45.1
Q ss_pred CCHhhHHHHHHhhcc--------------c-CCcchhhhhhcccccc-eeeehhhhhHHH-HHhhcccccccCCChhHHH
Q 046732 223 IPVRQRVAVCIWRLA--------------T-GEPLRLVSKRFGLGIS-TCHKLVLEVCTA-IRSVLMPKYLQWPDDDALR 285 (516)
Q Consensus 223 l~~eekL~v~L~~La--------------~-G~s~~~la~~Fgis~S-Tvsrii~~v~~a-L~~~L~~~~I~~P~~ee~~ 285 (516)
.++.++|+-+|..|+ - ..+..+||...|++++ |++|++.++... +.. .....|...+.+.+.
T Consensus 138 ~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~-~~~~~i~I~d~~~L~ 216 (238)
T 2bgc_A 138 NGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIV-YKNSCFYVQNLDYLK 216 (238)
T ss_dssp THHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEE-EETTEEEESCHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEE-ecCCEEEEeCHHHHH
Confidence 468899999987654 2 4567899999999995 999998887532 222 234445556666665
Q ss_pred hhH
Q 046732 286 KIK 288 (516)
Q Consensus 286 ~i~ 288 (516)
.+.
T Consensus 217 ~~~ 219 (238)
T 2bgc_A 217 RYA 219 (238)
T ss_dssp HHC
T ss_pred HHh
Confidence 544
No 202
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=23.37 E-value=15 Score=30.98 Aligned_cols=27 Identities=7% Similarity=0.078 Sum_probs=23.3
Q ss_pred cCCcchhhhhhcccccceeeehhhhhH
Q 046732 238 TGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 238 ~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
.+.+...|+..+|+|+|||++.+....
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~ 81 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLY 81 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457899999999999999999887654
No 203
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=22.98 E-value=34 Score=29.47 Aligned_cols=27 Identities=4% Similarity=-0.044 Sum_probs=22.7
Q ss_pred cCCcchhhhhhcccccceeeehhhhhH
Q 046732 238 TGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 238 ~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
...++.+|+..+|+|++||++.+.+..
T Consensus 22 ~~~s~~ela~~lg~s~~tv~~~l~~L~ 48 (151)
T 2dbb_A 22 SRLTYRELADILNTTRQRIARRIDKLK 48 (151)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457899999999999999988776653
No 204
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=22.81 E-value=18 Score=35.18 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=0.0
Q ss_pred cchhhhhhcccccceeeehhhh
Q 046732 241 PLRLVSKRFGLGISTCHKLVLE 262 (516)
Q Consensus 241 s~~~la~~Fgis~STvsrii~~ 262 (516)
+.++||...|||.+|||++++.
T Consensus 4 ti~diA~~agVS~~TVSrvln~ 25 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNN 25 (330)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 5689999999999999999875
No 205
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=22.75 E-value=12 Score=26.85 Aligned_cols=25 Identities=4% Similarity=-0.093 Sum_probs=21.3
Q ss_pred cccCCcchhhhhhcccccceeeehh
Q 046732 236 LATGEPLRLVSKRFGLGISTCHKLV 260 (516)
Q Consensus 236 La~G~s~~~la~~Fgis~STvsrii 260 (516)
-..|.++..+|...|+|.+|++++.
T Consensus 11 ~~~g~s~~~lA~~~gis~~~i~~~e 35 (66)
T 2xi8_A 11 EKKKISQSELAALLEVSRQTINGIE 35 (66)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3478899999999999999987764
No 206
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=22.55 E-value=18 Score=35.15 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=0.0
Q ss_pred Ccchhhhhhcccccceeeehhhh
Q 046732 240 EPLRLVSKRFGLGISTCHKLVLE 262 (516)
Q Consensus 240 ~s~~~la~~Fgis~STvsrii~~ 262 (516)
.+.++||...|||.+|||++++.
T Consensus 6 ~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 6 TTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHcC
Confidence 35789999999999999999875
No 207
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=22.24 E-value=35 Score=29.45 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=22.7
Q ss_pred cCCcchhhhhhcccccceeeehhhhhH
Q 046732 238 TGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 238 ~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
...++.+|+..+|+|++||++.+.+..
T Consensus 21 ~~~s~~ela~~lg~s~~tv~~~l~~L~ 47 (152)
T 2cg4_A 21 ARTAYAELAKQFGVSPETIHVRVEKMK 47 (152)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457899999999999999988776653
No 208
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=22.24 E-value=19 Score=31.88 Aligned_cols=41 Identities=10% Similarity=0.072 Sum_probs=0.4
Q ss_pred CCHhhHHHHHHhhcc---cCCcchhhhhhcccccceeeehhhhh
Q 046732 223 IPVRQRVAVCIWRLA---TGEPLRLVSKRFGLGISTCHKLVLEV 263 (516)
Q Consensus 223 l~~eekL~v~L~~La---~G~s~~~la~~Fgis~STvsrii~~v 263 (516)
.+++++++-.|..+. ...+...||...|+++.|++|++.+.
T Consensus 149 ~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~sretlsR~l~~l 192 (194)
T 3dn7_A 149 YSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSEIRKKY 192 (194)
T ss_dssp C-------------------------------------------
T ss_pred CCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCCHHHHHHHHHhh
Confidence 456677777776543 45678999999999999999988764
No 209
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=22.18 E-value=52 Score=28.30 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=27.3
Q ss_pred CCHhh-HHHHHHhhcc----cCCcchhhhhhcccccceeeehhhhhH
Q 046732 223 IPVRQ-RVAVCIWRLA----TGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 223 l~~ee-kL~v~L~~La----~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
+++.+ .++..|+... .+.+..+|+...+++++|+++++....
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le 77 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMR 77 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 45444 3444454432 236899999999999999988877654
No 210
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=21.98 E-value=19 Score=35.13 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=0.0
Q ss_pred Ccchhhhhhcccccceeeehhhh
Q 046732 240 EPLRLVSKRFGLGISTCHKLVLE 262 (516)
Q Consensus 240 ~s~~~la~~Fgis~STvsrii~~ 262 (516)
.+.++||...|||.+|||++++.
T Consensus 5 ~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 45789999999999999999864
No 211
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=21.85 E-value=19 Score=35.41 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=0.0
Q ss_pred cchhhhhhcccccceeeehhhh
Q 046732 241 PLRLVSKRFGLGISTCHKLVLE 262 (516)
Q Consensus 241 s~~~la~~Fgis~STvsrii~~ 262 (516)
+.++||...|||.+|||++++.
T Consensus 10 ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 10 TLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
Confidence 5789999999999999999875
No 212
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=21.67 E-value=34 Score=30.60 Aligned_cols=26 Identities=38% Similarity=0.464 Sum_probs=22.0
Q ss_pred cCCcchhhhhhcccccceeeehhhhh
Q 046732 238 TGEPLRLVSKRFGLGISTCHKLVLEV 263 (516)
Q Consensus 238 ~G~s~~~la~~Fgis~STvsrii~~v 263 (516)
...++.+|+..+|+|.+||.+.+.+.
T Consensus 40 ~~~s~~eLA~~lglS~~tv~~rl~~L 65 (171)
T 2e1c_A 40 GKAPLREISKITGLAESTIHERIRKL 65 (171)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45789999999999999988776554
No 213
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=21.59 E-value=20 Score=35.10 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=0.0
Q ss_pred Ccchhhhhhcccccceeeehhhh
Q 046732 240 EPLRLVSKRFGLGISTCHKLVLE 262 (516)
Q Consensus 240 ~s~~~la~~Fgis~STvsrii~~ 262 (516)
.+.++||..+|||.+|||++++.
T Consensus 7 ~ti~diA~~agVS~~TVSr~Ln~ 29 (333)
T 3jvd_A 7 SSLKEVAELAGVGYATASRALSG 29 (333)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 35789999999999999999874
No 214
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=21.52 E-value=38 Score=29.62 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=22.5
Q ss_pred cCCcchhhhhhcccccceeeehhhhhH
Q 046732 238 TGEPLRLVSKRFGLGISTCHKLVLEVC 264 (516)
Q Consensus 238 ~G~s~~~la~~Fgis~STvsrii~~v~ 264 (516)
...++.+|+..+|+|.+||++.+....
T Consensus 23 ~~~s~~ela~~lg~s~~tv~~~l~~L~ 49 (162)
T 2p5v_A 23 GRLTNVELSERVALSPSPCLRRLKQLE 49 (162)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457899999999999999988776643
No 215
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=21.48 E-value=18 Score=27.94 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=22.1
Q ss_pred cccCCcchhhhhhcccccceeeehhh
Q 046732 236 LATGEPLRLVSKRFGLGISTCHKLVL 261 (516)
Q Consensus 236 La~G~s~~~la~~Fgis~STvsrii~ 261 (516)
...|.++.++|...|++++|++++.+
T Consensus 28 ~~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 28 RNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35788999999999999999887653
No 216
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=21.44 E-value=15 Score=35.59 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=33.4
Q ss_pred CCCHhhHHHHHHhhccc---CCcchhhhhhcccccceeeehhhhhHH
Q 046732 222 AIPVRQRVAVCIWRLAT---GEPLRLVSKRFGLGISTCHKLVLEVCT 265 (516)
Q Consensus 222 ~l~~eekL~v~L~~La~---G~s~~~la~~Fgis~STvsrii~~v~~ 265 (516)
.++.-++.+-.|..|+. +.+..+|+...|+++||++|++...+.
T Consensus 25 ~v~sl~Ral~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~ 71 (275)
T 3mq0_A 25 TVPALRRAVRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTE 71 (275)
T ss_dssp GHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46667777777887763 467999999999999999998876554
No 217
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=21.41 E-value=16 Score=26.66 Aligned_cols=25 Identities=8% Similarity=0.078 Sum_probs=21.3
Q ss_pred cccCCcchhhhhhcccccceeeehh
Q 046732 236 LATGEPLRLVSKRFGLGISTCHKLV 260 (516)
Q Consensus 236 La~G~s~~~la~~Fgis~STvsrii 260 (516)
...|.++.+++...|||++|++++.
T Consensus 13 ~~~glsq~~lA~~~gis~~~i~~~e 37 (71)
T 1zug_A 13 IALKMTQTELATKAGVKQQSIQLIE 37 (71)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHH
Confidence 3578899999999999999987764
No 218
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=21.31 E-value=20 Score=34.89 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=0.0
Q ss_pred cchhhhhhcccccceeeehhhh
Q 046732 241 PLRLVSKRFGLGISTCHKLVLE 262 (516)
Q Consensus 241 s~~~la~~Fgis~STvsrii~~ 262 (516)
+.++||...|||.+|||++++.
T Consensus 5 ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 5 TMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCcCHHHHHHHHCC
Confidence 4689999999999999999865
No 219
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=21.23 E-value=16 Score=26.46 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=21.3
Q ss_pred cccCCcchhhhhhcccccceeeehh
Q 046732 236 LATGEPLRLVSKRFGLGISTCHKLV 260 (516)
Q Consensus 236 La~G~s~~~la~~Fgis~STvsrii 260 (516)
...|.++..+|...|+|++|++++.
T Consensus 11 ~~~glsq~~lA~~~gis~~~i~~~e 35 (69)
T 1r69_A 11 IQLGLNQAELAQKVGTTQQSIEQLE 35 (69)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3578899999999999999987764
No 220
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=21.21 E-value=28 Score=32.93 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=31.7
Q ss_pred CCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehh
Q 046732 221 NAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLV 260 (516)
Q Consensus 221 ~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii 260 (516)
..+++.++.......+..|.+...|+..+|+|+++|.+++
T Consensus 116 ~~L~~~E~a~~~~~l~~~g~t~~~iA~~lG~s~~~V~~~l 155 (230)
T 1vz0_A 116 EDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANAL 155 (230)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3567777666555555789999999999999999998765
No 221
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=21.18 E-value=20 Score=35.21 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=0.0
Q ss_pred cchhhhhhcccccceeeehhhh
Q 046732 241 PLRLVSKRFGLGISTCHKLVLE 262 (516)
Q Consensus 241 s~~~la~~Fgis~STvsrii~~ 262 (516)
+.++||...|||.+|||++++.
T Consensus 5 ti~diA~~aGVS~~TVSrvLn~ 26 (349)
T 1jye_A 5 TLYDVAEYAGVSYQTVSRVVNQ 26 (349)
T ss_dssp ----------------------
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 5789999999999999999875
No 222
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=20.78 E-value=21 Score=35.15 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=0.0
Q ss_pred cchhhhhhcccccceeeehhhh
Q 046732 241 PLRLVSKRFGLGISTCHKLVLE 262 (516)
Q Consensus 241 s~~~la~~Fgis~STvsrii~~ 262 (516)
+.++||..+|||.+|||++++.
T Consensus 14 ti~diA~~agVS~~TVSr~Ln~ 35 (355)
T 3e3m_A 14 TMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp ----------------------
T ss_pred cHHHHHHHhCCCHHHHHHHHCC
Confidence 4689999999999999999864
No 223
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=20.77 E-value=17 Score=27.81 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=32.6
Q ss_pred HhhcccCCcchhhhhhcccccceeeehhhhhHHHHHhhcccccccCCChhHHHhhHHHH
Q 046732 233 IWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEF 291 (516)
Q Consensus 233 L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L~~~~I~~P~~ee~~~i~~~F 291 (516)
-++...|.++.++|...|||.++++++.+- -..-|+.+.+..++..|
T Consensus 17 ~~R~~~gltq~elA~~~gis~~~is~~E~G------------~~~~p~~~~l~~ia~~l 63 (78)
T 3qq6_A 17 QYRKEKGYSLSELAEKAGVAKSYLSSIERN------------LQTNPSIQFLEKVSAVL 63 (78)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHTT------------SCCCCBHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHcC------------CCCCCCHHHHHHHHHHH
Confidence 345678999999999999999998775432 01235656666666554
No 224
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=20.05 E-value=18 Score=26.94 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=21.4
Q ss_pred cccCCcchhhhhhcccccceeeehh
Q 046732 236 LATGEPLRLVSKRFGLGISTCHKLV 260 (516)
Q Consensus 236 La~G~s~~~la~~Fgis~STvsrii 260 (516)
...|.++..+|...|+|++|++++.
T Consensus 20 ~~~glsq~~lA~~~gis~~~i~~~e 44 (77)
T 2b5a_A 20 TQKGVSQEELADLAGLHRTYISEVE 44 (77)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHH
Confidence 3478899999999999999987765
Done!