Query 046733
Match_columns 106
No_of_seqs 174 out of 1110
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 03:58:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00931 NB-ARC: NB-ARC domain 98.7 1.7E-08 3.6E-13 76.3 4.2 39 67-105 1-41 (287)
2 PLN03210 Resistant to P. syrin 98.7 1.4E-08 2.9E-13 91.8 4.0 44 62-105 184-229 (1153)
3 KOG4658 Apoptotic ATPase [Sign 98.7 1.7E-08 3.6E-13 90.1 3.9 54 48-105 147-201 (889)
4 PF13191 AAA_16: AAA ATPase do 97.9 7.6E-06 1.6E-10 57.6 2.3 42 64-105 2-46 (185)
5 cd00009 AAA The AAA+ (ATPases 97.7 4.8E-05 1E-09 49.8 3.7 40 66-105 2-41 (151)
6 PF01637 Arch_ATPase: Archaeal 97.7 3.1E-05 6.7E-10 55.6 2.7 41 64-104 1-41 (234)
7 TIGR02928 orc1/cdc6 family rep 97.5 0.00011 2.4E-09 57.7 4.5 44 62-105 15-62 (365)
8 CHL00095 clpC Clp protease ATP 97.4 0.00019 4E-09 63.6 4.0 42 62-103 179-220 (821)
9 TIGR00635 ruvB Holliday juncti 97.3 0.00018 4E-09 55.4 3.4 43 62-104 4-51 (305)
10 TIGR03345 VI_ClpV1 type VI sec 97.2 0.00035 7.5E-09 62.5 4.2 42 62-103 187-228 (852)
11 PRK00411 cdc6 cell division co 97.2 0.00046 1E-08 54.9 4.2 44 62-105 30-77 (394)
12 TIGR02639 ClpA ATP-dependent C 97.2 0.00041 8.8E-09 60.7 4.2 43 62-104 182-224 (731)
13 PRK10865 protein disaggregatio 97.1 0.00047 1E-08 61.6 4.2 42 62-103 178-219 (857)
14 PRK00080 ruvB Holliday junctio 97.0 0.00062 1.3E-08 53.7 3.5 43 62-104 25-72 (328)
15 PRK13342 recombination factor 97.0 0.00049 1.1E-08 56.2 2.5 42 63-104 13-57 (413)
16 TIGR03346 chaperone_ClpB ATP-d 96.9 0.0011 2.4E-08 59.1 4.3 42 62-103 173-214 (852)
17 PHA02544 44 clamp loader, smal 96.9 0.0014 2.9E-08 50.8 4.0 44 62-105 21-65 (316)
18 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0013 2.8E-08 54.2 3.8 49 52-103 44-98 (361)
19 TIGR02903 spore_lon_C ATP-depe 96.8 0.0013 2.7E-08 56.9 3.8 44 62-105 154-197 (615)
20 PRK11034 clpA ATP-dependent Cl 96.7 0.0018 4E-08 57.4 4.3 43 62-104 186-228 (758)
21 PRK06696 uridine kinase; Valid 96.7 0.0019 4.1E-08 48.3 3.7 38 67-104 3-43 (223)
22 PRK00440 rfc replication facto 96.7 0.0023 5E-08 49.0 3.9 43 62-104 17-59 (319)
23 PF05496 RuvB_N: Holliday junc 96.6 0.0016 3.5E-08 50.8 2.8 42 62-103 24-70 (233)
24 PRK12402 replication factor C 96.6 0.0025 5.5E-08 49.2 3.8 43 62-104 15-57 (337)
25 PTZ00202 tuzin; Provisional 96.6 0.004 8.7E-08 53.5 5.1 43 62-104 262-307 (550)
26 PRK07667 uridine kinase; Provi 96.5 0.0038 8.2E-08 45.9 3.9 35 70-104 2-38 (193)
27 PRK11331 5-methylcytosine-spec 96.5 0.0029 6.3E-08 53.6 3.6 41 62-104 175-215 (459)
28 PRK14961 DNA polymerase III su 96.4 0.0034 7.4E-08 50.5 3.7 42 62-103 16-58 (363)
29 PLN03025 replication factor C 96.4 0.0042 9.1E-08 48.9 3.8 43 62-104 13-55 (319)
30 PRK04195 replication factor C 96.3 0.0035 7.6E-08 52.3 2.9 43 62-104 14-60 (482)
31 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.0058 1.2E-07 44.7 3.8 37 69-105 24-60 (226)
32 PRK13341 recombination factor 96.2 0.004 8.7E-08 55.1 3.4 43 63-105 29-74 (725)
33 cd01128 rho_factor Transcripti 96.2 0.0025 5.5E-08 49.5 1.8 20 86-105 19-38 (249)
34 COG2256 MGS1 ATPase related to 96.2 0.004 8.7E-08 52.4 3.1 39 62-103 30-68 (436)
35 TIGR01242 26Sp45 26S proteasom 96.2 0.0049 1.1E-07 49.4 3.4 44 62-105 122-178 (364)
36 TIGR02030 BchI-ChlI magnesium 96.2 0.0057 1.2E-07 49.5 3.7 42 62-103 4-45 (337)
37 PRK03992 proteasome-activating 96.2 0.0054 1.2E-07 50.0 3.6 44 62-105 131-187 (389)
38 COG0542 clpA ATP-binding subun 96.1 0.006 1.3E-07 54.7 3.8 41 62-102 170-210 (786)
39 PRK14962 DNA polymerase III su 96.1 0.006 1.3E-07 51.4 3.6 42 62-103 14-56 (472)
40 TIGR03015 pepcterm_ATPase puta 96.1 0.0036 7.8E-08 47.0 2.0 20 86-105 46-65 (269)
41 CHL00081 chlI Mg-protoporyphyr 96.1 0.004 8.7E-08 50.9 2.4 44 62-105 17-60 (350)
42 TIGR02397 dnaX_nterm DNA polym 96.0 0.0084 1.8E-07 46.8 3.7 42 62-103 14-56 (355)
43 TIGR02881 spore_V_K stage V sp 96.0 0.0061 1.3E-07 46.6 2.8 43 62-104 6-63 (261)
44 COG0466 Lon ATP-dependent Lon 95.9 0.0056 1.2E-07 54.6 2.5 42 62-103 323-370 (782)
45 PRK14957 DNA polymerase III su 95.8 0.0085 1.9E-07 51.6 3.5 43 62-104 16-59 (546)
46 PRK05564 DNA polymerase III su 95.8 0.012 2.6E-07 46.2 4.0 43 62-104 4-47 (313)
47 PRK09270 nucleoside triphospha 95.8 0.011 2.5E-07 44.3 3.7 18 87-104 37-54 (229)
48 PRK14958 DNA polymerase III su 95.8 0.01 2.2E-07 50.5 3.6 42 62-103 16-58 (509)
49 PRK13531 regulatory ATPase Rav 95.8 0.0088 1.9E-07 51.2 3.2 41 62-104 20-60 (498)
50 PHA00729 NTP-binding motif con 95.8 0.0091 2E-07 46.3 3.0 31 73-103 7-37 (226)
51 TIGR02902 spore_lonB ATP-depen 95.7 0.011 2.3E-07 50.4 3.7 43 63-105 66-108 (531)
52 PRK14955 DNA polymerase III su 95.7 0.012 2.5E-07 48.1 3.6 42 62-103 16-58 (397)
53 PRK14956 DNA polymerase III su 95.7 0.01 2.2E-07 50.5 3.3 42 62-103 18-60 (484)
54 PRK15455 PrkA family serine pr 95.6 0.012 2.6E-07 51.7 3.6 42 63-104 77-124 (644)
55 PRK06547 hypothetical protein; 95.6 0.013 2.8E-07 42.9 3.3 17 87-103 19-35 (172)
56 PRK09376 rho transcription ter 95.6 0.0062 1.3E-07 51.1 1.7 19 87-105 173-191 (416)
57 PRK14963 DNA polymerase III su 95.6 0.014 3E-07 49.6 3.6 43 62-104 14-57 (504)
58 PRK14960 DNA polymerase III su 95.5 0.014 3.1E-07 51.7 3.8 42 62-103 15-57 (702)
59 PRK05896 DNA polymerase III su 95.5 0.014 3.1E-07 50.9 3.7 42 62-103 16-58 (605)
60 PRK14969 DNA polymerase III su 95.5 0.013 2.9E-07 49.8 3.4 42 62-103 16-58 (527)
61 PRK13407 bchI magnesium chelat 95.5 0.015 3.1E-07 47.2 3.3 42 62-103 8-49 (334)
62 PRK08903 DnaA regulatory inact 95.4 0.027 5.8E-07 41.7 4.4 20 86-105 45-64 (227)
63 PRK14951 DNA polymerase III su 95.4 0.016 3.4E-07 50.6 3.6 42 62-103 16-58 (618)
64 PRK12323 DNA polymerase III su 95.4 0.016 3.5E-07 51.4 3.6 42 62-103 16-58 (700)
65 COG2255 RuvB Holliday junction 95.4 0.012 2.5E-07 48.0 2.5 42 62-103 26-72 (332)
66 PRK08691 DNA polymerase III su 95.3 0.018 3.8E-07 51.2 3.6 42 62-103 16-58 (709)
67 PF00158 Sigma54_activat: Sigm 95.3 0.021 4.7E-07 41.6 3.4 42 64-105 1-44 (168)
68 PRK09111 DNA polymerase III su 95.3 0.021 4.5E-07 49.6 3.8 42 62-103 24-66 (598)
69 PRK14970 DNA polymerase III su 95.3 0.022 4.7E-07 45.4 3.7 42 62-103 17-59 (367)
70 PRK08084 DNA replication initi 95.2 0.03 6.6E-07 42.4 4.1 20 86-105 48-67 (235)
71 PRK03846 adenylylsulfate kinas 95.2 0.013 2.8E-07 43.0 2.0 18 87-104 28-45 (198)
72 PRK14949 DNA polymerase III su 95.2 0.021 4.6E-07 52.1 3.7 43 62-104 16-59 (944)
73 PRK07994 DNA polymerase III su 95.1 0.021 4.5E-07 50.2 3.5 42 62-103 16-58 (647)
74 PRK14950 DNA polymerase III su 95.1 0.022 4.7E-07 48.9 3.5 42 62-103 16-58 (585)
75 PRK14964 DNA polymerase III su 95.1 0.025 5.3E-07 48.2 3.8 42 62-103 13-55 (491)
76 cd04155 Arl3 Arl3 subfamily. 95.0 0.027 5.9E-07 39.0 3.2 19 86-104 17-35 (173)
77 PRK14952 DNA polymerase III su 95.0 0.025 5.4E-07 49.1 3.5 42 62-103 13-55 (584)
78 KOG2028 ATPase related to the 94.9 0.026 5.7E-07 47.9 3.4 17 87-103 166-182 (554)
79 PRK06645 DNA polymerase III su 94.9 0.03 6.6E-07 47.8 3.8 43 62-104 21-64 (507)
80 PRK06893 DNA replication initi 94.9 0.016 3.6E-07 43.7 1.9 19 87-105 43-61 (229)
81 PRK06620 hypothetical protein; 94.9 0.018 4E-07 43.4 2.1 18 87-104 48-65 (214)
82 PRK07003 DNA polymerase III su 94.9 0.028 6.1E-07 50.7 3.6 42 62-103 16-58 (830)
83 COG0714 MoxR-like ATPases [Gen 94.9 0.036 7.9E-07 43.8 3.9 40 62-103 24-63 (329)
84 PF01078 Mg_chelatase: Magnesi 94.8 0.032 7E-07 42.8 3.4 40 62-103 3-42 (206)
85 PRK07764 DNA polymerase III su 94.8 0.031 6.8E-07 50.2 3.8 42 62-103 15-57 (824)
86 PRK14954 DNA polymerase III su 94.7 0.036 7.8E-07 48.4 3.8 42 62-103 16-58 (620)
87 TIGR02880 cbbX_cfxQ probable R 94.7 0.042 9.1E-07 43.0 3.8 41 63-103 23-78 (284)
88 CHL00181 cbbX CbbX; Provisiona 94.7 0.037 7.9E-07 43.6 3.5 43 62-104 23-80 (287)
89 PRK08727 hypothetical protein; 94.6 0.046 1E-06 41.4 3.8 20 86-105 44-63 (233)
90 cd00879 Sar1 Sar1 subfamily. 94.6 0.044 9.5E-07 38.8 3.4 20 85-104 21-40 (190)
91 cd04153 Arl5_Arl8 Arl5/Arl8 su 94.5 0.045 9.7E-07 38.7 3.4 33 72-104 4-36 (174)
92 TIGR01241 FtsH_fam ATP-depende 94.5 0.041 8.8E-07 46.0 3.6 43 62-104 55-109 (495)
93 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.5 0.025 5.4E-07 41.5 2.1 18 87-104 34-51 (218)
94 TIGR00390 hslU ATP-dependent p 94.5 0.037 7.9E-07 46.9 3.3 42 62-103 12-67 (441)
95 PRK09112 DNA polymerase III su 94.5 0.048 1E-06 44.3 3.9 42 62-103 23-65 (351)
96 PRK06305 DNA polymerase III su 94.5 0.041 8.9E-07 46.0 3.5 42 62-103 17-59 (451)
97 KOG1532 GTPase XAB1, interacts 94.5 0.017 3.8E-07 47.2 1.2 19 87-105 23-41 (366)
98 PRK05342 clpX ATP-dependent pr 94.4 0.038 8.3E-07 45.9 3.2 43 62-104 71-129 (412)
99 cd03225 ABC_cobalt_CbiO_domain 94.4 0.027 5.9E-07 41.1 2.1 18 87-104 31-48 (211)
100 cd01130 VirB11-like_ATPase Typ 94.4 0.06 1.3E-06 39.2 3.8 34 70-104 13-46 (186)
101 PRK14953 DNA polymerase III su 94.3 0.05 1.1E-06 46.1 3.7 42 62-103 16-58 (486)
102 PRK09087 hypothetical protein; 94.3 0.029 6.2E-07 42.7 2.1 19 86-104 47-65 (226)
103 TIGR00960 3a0501s02 Type II (G 94.3 0.029 6.2E-07 41.2 2.0 18 87-104 33-50 (216)
104 PRK07940 DNA polymerase III su 94.3 0.049 1.1E-06 45.0 3.5 42 62-103 5-56 (394)
105 PRK11608 pspF phage shock prot 94.3 0.056 1.2E-06 43.1 3.7 44 62-105 6-51 (326)
106 PRK07471 DNA polymerase III su 94.3 0.059 1.3E-06 44.0 3.9 41 62-102 19-60 (365)
107 cd03263 ABC_subfamily_A The AB 94.2 0.031 6.8E-07 41.0 2.1 18 87-104 32-49 (220)
108 cd03261 ABC_Org_Solvent_Resist 94.2 0.032 6.8E-07 41.6 2.0 18 87-104 30-47 (235)
109 cd03256 ABC_PhnC_transporter A 94.1 0.033 7.2E-07 41.4 2.0 18 87-104 31-48 (241)
110 TIGR02640 gas_vesic_GvpN gas v 94.1 0.063 1.4E-06 41.3 3.6 19 86-104 24-42 (262)
111 TIGR02673 FtsE cell division A 94.1 0.034 7.3E-07 40.7 2.0 18 87-104 32-49 (214)
112 TIGR00763 lon ATP-dependent pr 94.1 0.044 9.5E-07 48.5 3.0 43 62-104 320-368 (775)
113 cd03229 ABC_Class3 This class 94.1 0.037 7.9E-07 39.8 2.1 18 87-104 30-47 (178)
114 cd03264 ABC_drug_resistance_li 94.0 0.036 7.8E-07 40.5 2.1 19 86-104 28-46 (211)
115 cd03293 ABC_NrtD_SsuB_transpor 94.0 0.036 7.8E-07 40.9 2.1 18 87-104 34-51 (220)
116 cd03292 ABC_FtsE_transporter F 94.0 0.035 7.6E-07 40.5 2.0 18 87-104 31-48 (214)
117 cd03259 ABC_Carb_Solutes_like 94.0 0.036 7.9E-07 40.6 2.1 18 87-104 30-47 (213)
118 TIGR01166 cbiO cobalt transpor 94.0 0.036 7.8E-07 40.0 2.0 18 87-104 22-39 (190)
119 TIGR02315 ABC_phnC phosphonate 94.0 0.036 7.9E-07 41.3 2.0 18 87-104 32-49 (243)
120 cd03260 ABC_PstB_phosphate_tra 94.0 0.037 8E-07 40.9 2.1 18 87-104 30-47 (227)
121 cd03269 ABC_putative_ATPase Th 94.0 0.037 7.9E-07 40.5 2.0 18 87-104 30-47 (210)
122 TIGR01817 nifA Nif-specific re 94.0 0.07 1.5E-06 44.9 3.9 44 62-105 196-241 (534)
123 PTZ00112 origin recognition co 94.0 0.081 1.7E-06 49.0 4.5 43 62-104 755-802 (1164)
124 PRK05563 DNA polymerase III su 94.0 0.063 1.4E-06 46.1 3.7 42 62-103 16-58 (559)
125 COG1474 CDC6 Cdc6-related prot 94.0 0.089 1.9E-06 43.1 4.4 42 63-104 18-63 (366)
126 PRK05201 hslU ATP-dependent pr 94.0 0.066 1.4E-06 45.4 3.7 42 62-103 15-70 (443)
127 COG1124 DppF ABC-type dipeptid 93.9 0.036 7.8E-07 43.9 2.0 17 87-103 37-53 (252)
128 PTZ00133 ADP-ribosylation fact 93.9 0.072 1.6E-06 38.3 3.5 19 85-103 19-37 (182)
129 PF14532 Sigma54_activ_2: Sigm 93.9 0.045 9.7E-07 37.9 2.2 41 65-105 1-43 (138)
130 PRK10787 DNA-binding ATP-depen 93.9 0.072 1.6E-06 47.6 4.0 43 62-104 322-370 (784)
131 PRK10584 putative ABC transpor 93.9 0.04 8.6E-07 40.8 2.1 18 87-104 40-57 (228)
132 PF05673 DUF815: Protein of un 93.9 0.067 1.4E-06 42.2 3.4 43 62-104 27-73 (249)
133 cd03278 ABC_SMC_barmotin Barmo 93.9 0.034 7.4E-07 41.2 1.7 19 87-105 26-44 (197)
134 TIGR00554 panK_bact pantothena 93.9 0.083 1.8E-06 42.1 3.9 17 87-103 66-82 (290)
135 TIGR03864 PQQ_ABC_ATP ABC tran 93.8 0.041 8.9E-07 41.1 2.1 18 87-104 31-48 (236)
136 cd03297 ABC_ModC_molybdenum_tr 93.8 0.04 8.7E-07 40.4 2.0 18 87-104 27-44 (214)
137 cd03258 ABC_MetN_methionine_tr 93.8 0.041 8.9E-07 40.8 2.0 18 87-104 35-52 (233)
138 cd03301 ABC_MalK_N The N-termi 93.8 0.041 8.9E-07 40.2 2.0 18 87-104 30-47 (213)
139 cd03296 ABC_CysA_sulfate_impor 93.8 0.042 9E-07 41.1 2.0 18 87-104 32-49 (239)
140 cd03235 ABC_Metallic_Cations A 93.8 0.041 8.8E-07 40.3 2.0 18 87-104 29-46 (213)
141 PRK13541 cytochrome c biogenes 93.8 0.042 9E-07 40.0 2.0 18 87-104 30-47 (195)
142 TIGR00455 apsK adenylylsulfate 93.8 0.042 9.2E-07 39.5 2.0 18 87-104 22-39 (184)
143 cd03265 ABC_DrrA DrrA is the A 93.8 0.041 9E-07 40.5 2.0 18 87-104 30-47 (220)
144 cd03226 ABC_cobalt_CbiO_domain 93.8 0.043 9.3E-07 40.0 2.0 18 87-104 30-47 (205)
145 TIGR02211 LolD_lipo_ex lipopro 93.8 0.044 9.5E-07 40.3 2.1 18 87-104 35-52 (221)
146 PRK11629 lolD lipoprotein tran 93.7 0.044 9.5E-07 40.8 2.1 18 87-104 39-56 (233)
147 PF13476 AAA_23: AAA domain; P 93.7 0.05 1.1E-06 38.2 2.3 19 87-105 23-41 (202)
148 cd03219 ABC_Mj1267_LivG_branch 93.7 0.043 9.4E-07 40.7 2.0 18 87-104 30-47 (236)
149 TIGR01243 CDC48 AAA family ATP 93.7 0.059 1.3E-06 47.2 3.1 43 62-104 178-233 (733)
150 cd00820 PEPCK_HprK Phosphoenol 93.7 0.047 1E-06 37.8 2.0 17 87-103 19-35 (107)
151 cd03257 ABC_NikE_OppD_transpor 93.6 0.045 9.7E-07 40.2 2.0 18 87-104 35-52 (228)
152 PRK13538 cytochrome c biogenes 93.6 0.047 1E-06 40.0 2.0 18 87-104 31-48 (204)
153 TIGR03689 pup_AAA proteasome A 93.6 0.077 1.7E-06 45.5 3.6 44 62-105 182-238 (512)
154 PRK06647 DNA polymerase III su 93.6 0.084 1.8E-06 45.5 3.8 42 62-103 16-58 (563)
155 PRK14738 gmk guanylate kinase; 93.6 0.049 1.1E-06 40.5 2.1 18 87-104 17-34 (206)
156 cd03266 ABC_NatA_sodium_export 93.6 0.046 1E-06 40.1 2.0 18 87-104 35-52 (218)
157 PRK14965 DNA polymerase III su 93.6 0.078 1.7E-06 45.6 3.6 42 62-103 16-58 (576)
158 smart00178 SAR Sar1p-like memb 93.6 0.091 2E-06 37.7 3.5 32 72-103 5-37 (184)
159 TIGR01978 sufC FeS assembly AT 93.6 0.046 1E-06 40.6 2.0 18 87-104 30-47 (243)
160 TIGR03608 L_ocin_972_ABC putat 93.6 0.05 1.1E-06 39.5 2.1 18 87-104 28-45 (206)
161 TIGR00602 rad24 checkpoint pro 93.6 0.075 1.6E-06 46.7 3.5 43 62-104 84-131 (637)
162 PTZ00361 26 proteosome regulat 93.6 0.072 1.6E-06 44.7 3.3 43 63-105 184-239 (438)
163 cd03224 ABC_TM1139_LivF_branch 93.6 0.048 1E-06 40.0 2.0 18 87-104 30-47 (222)
164 TIGR00150 HI0065_YjeE ATPase, 93.5 0.11 2.4E-06 37.1 3.8 36 69-104 6-43 (133)
165 cd03295 ABC_OpuCA_Osmoprotecti 93.5 0.05 1.1E-06 40.8 2.1 18 87-104 31-48 (242)
166 cd03273 ABC_SMC2_euk Eukaryoti 93.5 0.047 1E-06 41.3 1.9 19 87-105 29-47 (251)
167 COG3899 Predicted ATPase [Gene 93.5 0.072 1.6E-06 47.9 3.3 41 64-104 2-45 (849)
168 PRK10536 hypothetical protein; 93.5 0.093 2E-06 41.7 3.6 40 62-103 55-94 (262)
169 COG0529 CysC Adenylylsulfate k 93.4 0.053 1.1E-06 41.5 2.1 18 87-104 25-44 (197)
170 TIGR02974 phageshock_pspF psp 93.4 0.084 1.8E-06 42.3 3.3 42 64-105 1-44 (329)
171 PRK06526 transposase; Provisio 93.4 0.053 1.2E-06 42.1 2.1 19 85-103 100-118 (254)
172 PRK11124 artP arginine transpo 93.4 0.053 1.1E-06 40.5 2.1 18 87-104 32-49 (242)
173 PLN02200 adenylate kinase fami 93.4 0.051 1.1E-06 41.6 2.0 17 87-103 47-63 (234)
174 TIGR00764 lon_rel lon-related 93.4 0.077 1.7E-06 46.1 3.3 41 62-104 18-58 (608)
175 cd03218 ABC_YhbG The ABC trans 93.4 0.053 1.1E-06 40.1 2.0 18 87-104 30-47 (232)
176 PRK10247 putative ABC transpor 93.4 0.055 1.2E-06 40.3 2.1 18 87-104 37-54 (225)
177 cd03252 ABCC_Hemolysin The ABC 93.4 0.054 1.2E-06 40.3 2.0 18 87-104 32-49 (237)
178 PRK14948 DNA polymerase III su 93.4 0.096 2.1E-06 45.7 3.8 42 62-103 16-58 (620)
179 cd03268 ABC_BcrA_bacitracin_re 93.4 0.056 1.2E-06 39.4 2.1 18 87-104 30-47 (208)
180 PRK11264 putative amino-acid A 93.4 0.054 1.2E-06 40.6 2.0 18 87-104 33-50 (250)
181 PRK14245 phosphate ABC transpo 93.3 0.053 1.2E-06 40.8 2.0 18 87-104 33-50 (250)
182 PRK11300 livG leucine/isoleuci 93.3 0.054 1.2E-06 40.7 2.0 18 87-104 35-52 (255)
183 TIGR02324 CP_lyasePhnL phospho 93.3 0.056 1.2E-06 39.8 2.0 18 87-104 38-55 (224)
184 PRK11248 tauB taurine transpor 93.3 0.055 1.2E-06 41.3 2.1 18 87-104 31-48 (255)
185 TIGR00972 3a0107s01c2 phosphat 93.3 0.055 1.2E-06 40.6 2.0 17 87-103 31-47 (247)
186 PRK09493 glnQ glutamine ABC tr 93.3 0.056 1.2E-06 40.3 2.0 18 87-104 31-48 (240)
187 cd03262 ABC_HisP_GlnQ_permease 93.3 0.058 1.2E-06 39.3 2.0 18 87-104 30-47 (213)
188 TIGR03598 GTPase_YsxC ribosome 93.2 0.079 1.7E-06 37.7 2.6 20 85-104 20-39 (179)
189 TIGR01277 thiQ thiamine ABC tr 93.2 0.06 1.3E-06 39.6 2.0 18 87-104 28-45 (213)
190 PRK14247 phosphate ABC transpo 93.2 0.058 1.2E-06 40.5 2.0 18 87-104 33-50 (250)
191 PRK14242 phosphate transporter 93.2 0.06 1.3E-06 40.5 2.1 18 87-104 36-53 (253)
192 PRK10619 histidine/lysine/argi 93.2 0.058 1.3E-06 40.8 2.0 18 87-104 35-52 (257)
193 TIGR00382 clpX endopeptidase C 93.2 0.11 2.4E-06 43.4 3.8 43 62-104 77-137 (413)
194 PRK10908 cell division protein 93.2 0.061 1.3E-06 39.7 2.1 18 87-104 32-49 (222)
195 PRK09183 transposase/IS protei 93.2 0.06 1.3E-06 41.7 2.1 19 86-104 105-123 (259)
196 PTZ00454 26S protease regulato 93.2 0.1 2.2E-06 43.2 3.5 44 62-105 145-201 (398)
197 PRK05642 DNA replication initi 93.1 0.059 1.3E-06 40.9 2.0 19 87-105 49-67 (234)
198 PRK07133 DNA polymerase III su 93.1 0.1 2.3E-06 46.5 3.7 42 62-103 18-60 (725)
199 PRK11701 phnK phosphonate C-P 93.1 0.063 1.4E-06 40.7 2.1 18 87-104 36-53 (258)
200 cd03223 ABCD_peroxisomal_ALDP 93.1 0.066 1.4E-06 38.2 2.1 18 87-104 31-48 (166)
201 cd03249 ABC_MTABC3_MDL1_MDL2 M 93.1 0.067 1.4E-06 39.8 2.2 18 87-104 33-50 (238)
202 TIGR03410 urea_trans_UrtE urea 93.1 0.062 1.4E-06 39.8 2.0 18 87-104 30-47 (230)
203 PRK15177 Vi polysaccharide exp 93.1 0.064 1.4E-06 39.9 2.0 19 86-104 16-34 (213)
204 cd03247 ABCC_cytochrome_bd The 93.1 0.066 1.4E-06 38.4 2.0 18 87-104 32-49 (178)
205 cd03267 ABC_NatA_like Similar 93.1 0.063 1.4E-06 40.3 2.0 18 87-104 51-68 (236)
206 PRK15429 formate hydrogenlyase 93.1 0.12 2.7E-06 44.8 4.0 44 62-105 376-421 (686)
207 PRK13539 cytochrome c biogenes 93.0 0.066 1.4E-06 39.3 2.1 18 87-104 32-49 (207)
208 PRK13540 cytochrome c biogenes 93.0 0.065 1.4E-06 39.1 2.0 18 87-104 31-48 (200)
209 CHL00131 ycf16 sulfate ABC tra 93.0 0.063 1.4E-06 40.3 2.0 18 87-104 37-54 (252)
210 PRK14274 phosphate ABC transpo 93.0 0.063 1.4E-06 40.7 2.0 18 87-104 42-59 (259)
211 cd03251 ABCC_MsbA MsbA is an e 93.0 0.065 1.4E-06 39.7 2.0 18 87-104 32-49 (234)
212 TIGR00750 lao LAO/AO transport 93.0 0.11 2.5E-06 40.7 3.5 33 71-103 20-54 (300)
213 PRK10895 lipopolysaccharide AB 93.0 0.064 1.4E-06 40.1 2.0 17 87-103 33-49 (241)
214 PRK14250 phosphate ABC transpo 93.0 0.066 1.4E-06 40.2 2.1 18 87-104 33-50 (241)
215 TIGR01189 ccmA heme ABC export 93.0 0.067 1.4E-06 38.9 2.0 18 87-104 30-47 (198)
216 cd03240 ABC_Rad50 The catalyti 93.0 0.064 1.4E-06 39.8 1.9 18 87-104 26-43 (204)
217 cd03222 ABC_RNaseL_inhibitor T 93.0 0.063 1.4E-06 39.5 1.9 18 87-104 29-46 (177)
218 PRK14239 phosphate transporter 93.0 0.067 1.5E-06 40.1 2.0 18 87-104 35-52 (252)
219 TIGR02639 ClpA ATP-dependent C 93.0 0.14 2.9E-06 45.1 4.2 43 62-104 454-505 (731)
220 cd03237 ABC_RNaseL_inhibitor_d 93.0 0.065 1.4E-06 40.9 2.0 18 87-104 29-46 (246)
221 KOG0734 AAA+-type ATPase conta 92.9 0.081 1.7E-06 46.7 2.7 42 62-103 304-357 (752)
222 cd03272 ABC_SMC3_euk Eukaryoti 92.9 0.069 1.5E-06 39.8 2.0 18 87-104 27-44 (243)
223 PRK14241 phosphate transporter 92.9 0.067 1.4E-06 40.5 2.0 18 87-104 34-51 (258)
224 PRK11831 putative ABC transpor 92.9 0.066 1.4E-06 41.0 2.0 18 87-104 37-54 (269)
225 PRK14267 phosphate ABC transpo 92.9 0.067 1.5E-06 40.2 2.0 18 87-104 34-51 (253)
226 cd03215 ABC_Carb_Monos_II This 92.9 0.07 1.5E-06 38.4 2.0 18 87-104 30-47 (182)
227 PRK14248 phosphate ABC transpo 92.9 0.068 1.5E-06 40.8 2.0 18 87-104 51-68 (268)
228 PRK09544 znuC high-affinity zi 92.9 0.071 1.5E-06 40.7 2.1 18 87-104 34-51 (251)
229 TIGR02868 CydC thiol reductant 92.9 0.071 1.5E-06 44.3 2.2 19 86-104 364-382 (529)
230 PRK10575 iron-hydroxamate tran 92.9 0.068 1.5E-06 40.8 1.9 18 87-104 41-58 (265)
231 cd03214 ABC_Iron-Siderophores_ 92.9 0.075 1.6E-06 38.2 2.1 18 87-104 29-46 (180)
232 KOG0991 Replication factor C, 92.9 0.13 2.8E-06 41.5 3.6 41 62-102 27-67 (333)
233 PRK10744 pstB phosphate transp 92.8 0.07 1.5E-06 40.5 2.0 18 87-104 43-60 (260)
234 PRK10418 nikD nickel transport 92.8 0.072 1.6E-06 40.3 2.0 18 87-104 33-50 (254)
235 TIGR03873 F420-0_ABC_ATP propo 92.8 0.071 1.5E-06 40.3 2.0 18 87-104 31-48 (256)
236 cd03246 ABCC_Protease_Secretio 92.8 0.075 1.6E-06 38.0 2.0 18 87-104 32-49 (173)
237 cd03230 ABC_DR_subfamily_A Thi 92.8 0.075 1.6E-06 38.0 2.0 18 87-104 30-47 (173)
238 PRK08099 bifunctional DNA-bind 92.8 0.069 1.5E-06 44.1 2.0 18 87-104 223-240 (399)
239 PRK14256 phosphate ABC transpo 92.8 0.072 1.6E-06 40.1 2.0 18 87-104 34-51 (252)
240 PRK14238 phosphate transporter 92.8 0.071 1.5E-06 40.9 2.0 18 87-104 54-71 (271)
241 cd03233 ABC_PDR_domain1 The pl 92.8 0.072 1.6E-06 39.1 1.9 18 87-104 37-54 (202)
242 PF13604 AAA_30: AAA domain; P 92.8 0.18 3.9E-06 37.2 4.1 32 72-104 7-39 (196)
243 PRK14261 phosphate ABC transpo 92.8 0.073 1.6E-06 40.1 2.0 18 87-104 36-53 (253)
244 COG1116 TauB ABC-type nitrate/ 92.8 0.071 1.5E-06 42.1 2.0 17 87-103 33-49 (248)
245 PRK13638 cbiO cobalt transport 92.8 0.072 1.6E-06 40.8 2.0 18 87-104 31-48 (271)
246 PRK13649 cbiO cobalt transport 92.7 0.074 1.6E-06 40.8 2.0 18 87-104 37-54 (280)
247 cd03290 ABCC_SUR1_N The SUR do 92.7 0.077 1.7E-06 39.0 2.1 18 87-104 31-48 (218)
248 PRK14262 phosphate ABC transpo 92.7 0.074 1.6E-06 39.9 2.0 18 87-104 33-50 (250)
249 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.7 0.079 1.7E-06 37.1 2.0 18 87-104 30-47 (144)
250 PRK15093 antimicrobial peptide 92.7 0.072 1.6E-06 42.4 2.0 18 87-104 37-54 (330)
251 PRK09580 sufC cysteine desulfu 92.7 0.074 1.6E-06 39.7 2.0 18 87-104 31-48 (248)
252 PRK14255 phosphate ABC transpo 92.7 0.075 1.6E-06 40.0 2.0 18 87-104 35-52 (252)
253 PRK11034 clpA ATP-dependent Cl 92.7 0.15 3.3E-06 45.5 4.2 42 62-103 458-508 (758)
254 KOG2004 Mitochondrial ATP-depe 92.7 0.11 2.4E-06 47.0 3.3 42 62-103 411-458 (906)
255 cd03279 ABC_sbcCD SbcCD and ot 92.7 0.071 1.5E-06 39.5 1.8 18 87-104 32-49 (213)
256 PRK11247 ssuB aliphatic sulfon 92.7 0.075 1.6E-06 40.9 2.0 18 87-104 42-59 (257)
257 CHL00176 ftsH cell division pr 92.7 0.086 1.9E-06 46.2 2.6 43 62-104 183-237 (638)
258 cd03245 ABCC_bacteriocin_expor 92.7 0.078 1.7E-06 38.9 2.0 18 87-104 34-51 (220)
259 cd03294 ABC_Pro_Gly_Bertaine T 92.7 0.078 1.7E-06 40.7 2.1 18 87-104 54-71 (269)
260 PRK14260 phosphate ABC transpo 92.7 0.079 1.7E-06 40.2 2.1 18 87-104 37-54 (259)
261 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 92.7 0.078 1.7E-06 39.6 2.0 18 87-104 52-69 (224)
262 PRK11231 fecE iron-dicitrate t 92.7 0.077 1.7E-06 40.1 2.0 18 87-104 32-49 (255)
263 cd03248 ABCC_TAP TAP, the Tran 92.6 0.082 1.8E-06 39.0 2.1 18 87-104 44-61 (226)
264 cd03232 ABC_PDR_domain2 The pl 92.6 0.082 1.8E-06 38.5 2.1 18 87-104 37-54 (192)
265 PRK11022 dppD dipeptide transp 92.6 0.073 1.6E-06 42.4 1.9 18 87-104 37-54 (326)
266 PF13086 AAA_11: AAA domain; P 92.6 0.087 1.9E-06 37.6 2.1 16 87-102 21-36 (236)
267 PRK14237 phosphate transporter 92.6 0.081 1.8E-06 40.5 2.1 18 87-104 50-67 (267)
268 cd03238 ABC_UvrA The excision 92.6 0.081 1.8E-06 38.9 2.0 18 87-104 25-42 (176)
269 COG4608 AppF ABC-type oligopep 92.6 0.079 1.7E-06 42.2 2.1 17 87-103 43-59 (268)
270 cd03253 ABCC_ATM1_transporter 92.6 0.083 1.8E-06 39.2 2.1 18 87-104 31-48 (236)
271 PRK14259 phosphate ABC transpo 92.6 0.08 1.7E-06 40.6 2.0 18 87-104 43-60 (269)
272 cd03244 ABCC_MRP_domain2 Domai 92.6 0.082 1.8E-06 38.8 2.0 18 87-104 34-51 (221)
273 COG1120 FepC ABC-type cobalami 92.6 0.085 1.8E-06 41.7 2.2 19 87-105 32-50 (258)
274 TIGR00767 rho transcription te 92.6 0.069 1.5E-06 44.9 1.8 19 87-105 172-190 (415)
275 cd03228 ABCC_MRP_Like The MRP 92.6 0.088 1.9E-06 37.5 2.1 18 87-104 32-49 (171)
276 TIGR02782 TrbB_P P-type conjug 92.6 0.073 1.6E-06 42.2 1.8 21 85-105 134-154 (299)
277 PRK05022 anaerobic nitric oxid 92.6 0.16 3.5E-06 42.7 4.0 44 62-105 187-232 (509)
278 cd03234 ABCG_White The White s 92.6 0.081 1.8E-06 39.2 2.0 18 87-104 37-54 (226)
279 PRK14265 phosphate ABC transpo 92.5 0.083 1.8E-06 40.7 2.1 18 87-104 50-67 (274)
280 TIGR03005 ectoine_ehuA ectoine 92.5 0.083 1.8E-06 39.8 2.0 18 87-104 30-47 (252)
281 PRK10771 thiQ thiamine transpo 92.5 0.083 1.8E-06 39.3 2.0 18 87-104 29-46 (232)
282 PRK14240 phosphate transporter 92.5 0.084 1.8E-06 39.6 2.0 18 87-104 33-50 (250)
283 PRK13645 cbiO cobalt transport 92.5 0.082 1.8E-06 40.9 2.0 18 87-104 41-58 (289)
284 PF00025 Arf: ADP-ribosylation 92.5 0.12 2.6E-06 37.0 2.8 20 85-104 16-35 (175)
285 PRK14243 phosphate transporter 92.5 0.083 1.8E-06 40.4 2.0 18 87-104 40-57 (264)
286 PRK08451 DNA polymerase III su 92.5 0.16 3.4E-06 43.8 3.9 42 62-103 14-56 (535)
287 TIGR02788 VirB11 P-type DNA tr 92.5 0.17 3.7E-06 39.9 3.8 19 86-104 147-165 (308)
288 PRK15056 manganese/iron transp 92.5 0.083 1.8E-06 40.5 2.0 18 87-104 37-54 (272)
289 PRK14270 phosphate ABC transpo 92.5 0.085 1.8E-06 39.7 2.0 18 87-104 34-51 (251)
290 cd03298 ABC_ThiQ_thiamine_tran 92.5 0.086 1.9E-06 38.5 2.0 18 87-104 28-45 (211)
291 PLN02796 D-glycerate 3-kinase 92.5 0.083 1.8E-06 43.4 2.1 18 87-104 104-121 (347)
292 PRK08154 anaerobic benzoate ca 92.4 0.15 3.4E-06 40.2 3.5 17 87-103 137-153 (309)
293 PRK14266 phosphate ABC transpo 92.4 0.09 2E-06 39.5 2.1 18 87-104 33-50 (250)
294 cd04154 Arl2 Arl2 subfamily. 92.4 0.093 2E-06 36.7 2.0 20 85-104 16-35 (173)
295 PRK00454 engB GTP-binding prot 92.4 0.096 2.1E-06 37.0 2.1 21 85-105 26-46 (196)
296 TIGR01188 drrA daunorubicin re 92.4 0.085 1.9E-06 41.2 2.0 18 87-104 23-40 (302)
297 TIGR02442 Cob-chelat-sub cobal 92.4 0.15 3.2E-06 44.3 3.6 43 62-104 4-46 (633)
298 TIGR03499 FlhF flagellar biosy 92.4 0.085 1.8E-06 41.3 2.0 17 87-103 198-214 (282)
299 PRK14251 phosphate ABC transpo 92.4 0.088 1.9E-06 39.5 2.0 18 87-104 34-51 (251)
300 PLN02318 phosphoribulokinase/u 92.4 0.14 3E-06 45.3 3.4 18 87-104 69-86 (656)
301 cd03216 ABC_Carb_Monos_I This 92.4 0.095 2.1E-06 37.3 2.1 18 87-104 30-47 (163)
302 PRK14244 phosphate ABC transpo 92.4 0.092 2E-06 39.5 2.1 18 87-104 35-52 (251)
303 PRK13543 cytochrome c biogenes 92.4 0.093 2E-06 38.7 2.1 18 87-104 41-58 (214)
304 PF08298 AAA_PrkA: PrkA AAA do 92.3 0.12 2.6E-06 42.7 2.9 42 62-103 61-108 (358)
305 PRK14273 phosphate ABC transpo 92.3 0.09 2E-06 39.6 2.0 18 87-104 37-54 (254)
306 KOG1547 Septin CDC10 and relat 92.3 0.14 3.1E-06 41.4 3.1 43 63-105 25-68 (336)
307 cd01394 radB RadB. The archaea 92.3 0.092 2E-06 38.5 2.0 17 87-103 23-39 (218)
308 PRK14235 phosphate transporter 92.3 0.093 2E-06 40.1 2.1 18 87-104 49-66 (267)
309 cd01129 PulE-GspE PulE/GspE Th 92.3 0.2 4.2E-06 39.0 3.9 39 65-103 62-100 (264)
310 PRK14253 phosphate ABC transpo 92.2 0.094 2E-06 39.3 2.0 18 87-104 33-50 (249)
311 PRK13548 hmuV hemin importer A 92.2 0.094 2E-06 39.9 2.0 18 87-104 32-49 (258)
312 TIGR02323 CP_lyasePhnK phospho 92.2 0.096 2.1E-06 39.4 2.0 18 87-104 33-50 (253)
313 cd03369 ABCC_NFT1 Domain 2 of 92.2 0.098 2.1E-06 38.2 2.0 18 87-104 38-55 (207)
314 COG1123 ATPase components of v 92.2 0.088 1.9E-06 45.6 2.0 17 87-103 321-337 (539)
315 TIGR00362 DnaA chromosomal rep 92.2 0.091 2E-06 42.6 2.0 19 87-105 140-158 (405)
316 PRK13650 cbiO cobalt transport 92.1 0.099 2.2E-06 40.4 2.1 18 87-104 37-54 (279)
317 cd03254 ABCC_Glucan_exporter_l 92.1 0.1 2.2E-06 38.5 2.0 17 87-103 33-49 (229)
318 PRK13640 cbiO cobalt transport 92.1 0.099 2.2E-06 40.4 2.0 18 87-104 37-54 (282)
319 PRK14272 phosphate ABC transpo 92.1 0.1 2.2E-06 39.2 2.0 18 87-104 34-51 (252)
320 cd00267 ABC_ATPase ABC (ATP-bi 92.1 0.11 2.4E-06 36.3 2.1 18 87-104 29-46 (157)
321 PRK11614 livF leucine/isoleuci 92.1 0.1 2.2E-06 38.9 2.0 18 87-104 35-52 (237)
322 TIGR03740 galliderm_ABC gallid 92.0 0.1 2.3E-06 38.5 2.0 18 87-104 30-47 (223)
323 cd03231 ABC_CcmA_heme_exporter 92.0 0.1 2.3E-06 38.1 2.0 18 87-104 30-47 (201)
324 PF13245 AAA_19: Part of AAA d 92.0 0.12 2.5E-06 33.3 2.0 17 87-103 14-31 (76)
325 PF03193 DUF258: Protein of un 92.0 0.17 3.7E-06 37.3 3.1 32 69-104 24-56 (161)
326 PRK05439 pantothenate kinase; 92.0 0.22 4.8E-06 40.1 4.0 17 87-103 90-106 (311)
327 PRK13632 cbiO cobalt transport 92.0 0.1 2.3E-06 39.9 2.1 18 87-104 39-56 (271)
328 PRK10419 nikE nickel transport 92.0 0.1 2.3E-06 40.0 2.0 18 87-104 42-59 (268)
329 PRK13648 cbiO cobalt transport 92.0 0.1 2.3E-06 39.8 2.0 18 87-104 39-56 (269)
330 PRK09473 oppD oligopeptide tra 92.0 0.096 2.1E-06 41.9 1.8 18 87-104 46-63 (330)
331 PRK11153 metN DL-methionine tr 92.0 0.1 2.2E-06 41.8 2.0 18 87-104 35-52 (343)
332 COG1121 ZnuC ABC-type Mn/Zn tr 91.9 0.1 2.2E-06 41.2 2.0 18 87-104 34-51 (254)
333 PRK09984 phosphonate/organopho 91.9 0.1 2.3E-06 39.5 2.0 18 87-104 34-51 (262)
334 PRK14269 phosphate ABC transpo 91.9 0.11 2.4E-06 39.1 2.1 18 87-104 32-49 (246)
335 PRK13646 cbiO cobalt transport 91.9 0.11 2.4E-06 40.3 2.1 18 87-104 37-54 (286)
336 PRK14959 DNA polymerase III su 91.9 0.18 3.9E-06 44.3 3.6 42 62-103 16-58 (624)
337 PRK11308 dppF dipeptide transp 91.9 0.1 2.3E-06 41.6 2.0 18 87-104 45-62 (327)
338 PRK14236 phosphate transporter 91.9 0.11 2.3E-06 39.9 2.0 18 87-104 55-72 (272)
339 PRK08116 hypothetical protein; 91.9 0.1 2.3E-06 40.6 1.9 20 86-105 117-136 (268)
340 PRK13546 teichoic acids export 91.9 0.11 2.3E-06 40.2 2.0 18 87-104 54-71 (264)
341 PF00308 Bac_DnaA: Bacterial d 91.9 0.33 7.1E-06 36.6 4.6 44 62-105 9-56 (219)
342 PRK14268 phosphate ABC transpo 91.8 0.11 2.4E-06 39.4 2.0 18 87-104 42-59 (258)
343 PRK05537 bifunctional sulfate 91.8 0.21 4.5E-06 43.2 3.8 18 87-104 396-413 (568)
344 PRK13647 cbiO cobalt transport 91.8 0.11 2.4E-06 40.0 2.0 18 87-104 35-52 (274)
345 PRK10253 iron-enterobactin tra 91.8 0.11 2.4E-06 39.6 1.9 18 87-104 37-54 (265)
346 TIGR02769 nickel_nikE nickel i 91.8 0.11 2.4E-06 39.6 2.0 18 87-104 41-58 (265)
347 cd01878 HflX HflX subfamily. 91.8 0.12 2.7E-06 37.1 2.1 19 86-104 44-62 (204)
348 PRK14971 DNA polymerase III su 91.8 0.19 4.1E-06 43.8 3.6 42 62-103 17-59 (614)
349 TIGR03411 urea_trans_UrtD urea 91.7 0.12 2.6E-06 38.5 2.0 18 87-104 32-49 (242)
350 COG2274 SunT ABC-type bacterio 91.7 0.11 2.3E-06 46.2 2.0 18 86-103 502-519 (709)
351 cd03236 ABC_RNaseL_inhibitor_d 91.7 0.12 2.6E-06 39.8 2.1 18 87-104 30-47 (255)
352 PRK14271 phosphate ABC transpo 91.7 0.12 2.6E-06 39.9 2.1 18 87-104 51-68 (276)
353 PRK14252 phosphate ABC transpo 91.7 0.12 2.6E-06 39.4 2.0 18 87-104 46-63 (265)
354 PRK14249 phosphate ABC transpo 91.7 0.12 2.6E-06 38.9 2.0 17 87-103 34-50 (251)
355 COG0542 clpA ATP-binding subun 91.6 0.18 4E-06 45.4 3.4 42 62-103 491-541 (786)
356 cd03250 ABCC_MRP_domain1 Domai 91.6 0.12 2.7E-06 37.5 2.0 18 87-104 35-52 (204)
357 PRK15112 antimicrobial peptide 91.6 0.12 2.6E-06 39.5 2.0 18 87-104 43-60 (267)
358 smart00350 MCM minichromosome 91.6 0.21 4.5E-06 42.2 3.6 44 62-105 203-258 (509)
359 PRK03695 vitamin B12-transport 91.6 0.12 2.6E-06 39.1 2.0 18 87-104 26-43 (248)
360 PRK13547 hmuV hemin importer A 91.6 0.12 2.6E-06 40.0 2.0 18 87-104 31-48 (272)
361 KOG0738 AAA+-type ATPase [Post 91.6 0.19 4.2E-06 42.8 3.3 44 62-105 212-267 (491)
362 TIGR02982 heterocyst_DevA ABC 91.6 0.13 2.7E-06 38.0 2.0 18 87-104 35-52 (220)
363 PRK13639 cbiO cobalt transport 91.6 0.12 2.7E-06 39.7 2.0 18 87-104 32-49 (275)
364 PRK10923 glnG nitrogen regulat 91.6 0.25 5.4E-06 40.3 3.9 44 62-105 138-183 (469)
365 TIGR01650 PD_CobS cobaltochela 91.6 0.36 7.8E-06 39.4 4.8 32 70-103 53-84 (327)
366 PRK11176 lipid transporter ATP 91.6 0.12 2.5E-06 43.5 2.0 19 86-104 372-390 (582)
367 cd01123 Rad51_DMC1_radA Rad51_ 91.6 0.13 2.8E-06 38.0 2.0 18 87-104 23-40 (235)
368 COG1132 MdlB ABC-type multidru 91.5 0.12 2.7E-06 43.4 2.2 20 86-105 358-377 (567)
369 PRK14275 phosphate ABC transpo 91.5 0.12 2.7E-06 40.1 2.0 18 87-104 69-86 (286)
370 TIGR03346 chaperone_ClpB ATP-d 91.5 0.17 3.6E-06 45.4 3.0 43 62-104 565-616 (852)
371 TIGR01288 nodI ATP-binding ABC 91.5 0.12 2.7E-06 40.3 2.0 18 87-104 34-51 (303)
372 KOG0731 AAA+-type ATPase conta 91.5 0.11 2.5E-06 46.6 1.9 42 62-103 311-364 (774)
373 PRK13652 cbiO cobalt transport 91.5 0.13 2.8E-06 39.7 2.0 18 87-104 34-51 (277)
374 PRK14258 phosphate ABC transpo 91.5 0.13 2.9E-06 39.1 2.1 18 87-104 37-54 (261)
375 PRK10865 protein disaggregatio 91.5 0.24 5.3E-06 44.6 4.0 43 62-104 568-619 (857)
376 TIGR02314 ABC_MetN D-methionin 91.4 0.12 2.7E-06 41.7 2.0 18 87-104 35-52 (343)
377 cd03291 ABCC_CFTR1 The CFTR su 91.4 0.13 2.8E-06 40.3 2.1 18 87-104 67-84 (282)
378 PRK13641 cbiO cobalt transport 91.4 0.13 2.9E-06 39.8 2.1 18 87-104 37-54 (287)
379 PRK12422 chromosomal replicati 91.4 0.12 2.7E-06 43.2 2.0 19 87-105 145-163 (445)
380 PRK15079 oligopeptide ABC tran 91.3 0.13 2.8E-06 41.2 2.0 18 87-104 51-68 (331)
381 PRK11388 DNA-binding transcrip 91.3 0.26 5.7E-06 42.3 3.9 44 62-105 325-370 (638)
382 TIGR02142 modC_ABC molybdenum 91.3 0.13 2.9E-06 41.2 2.1 18 87-104 27-44 (354)
383 PRK14088 dnaA chromosomal repl 91.3 0.13 2.8E-06 42.8 2.0 20 86-105 133-152 (440)
384 COG1136 SalX ABC-type antimicr 91.3 0.14 2.9E-06 39.8 2.0 18 87-104 35-52 (226)
385 PRK13651 cobalt transporter AT 91.3 0.14 3E-06 40.5 2.0 18 87-104 37-54 (305)
386 PRK11144 modC molybdate transp 91.3 0.13 2.9E-06 41.3 2.0 18 87-104 28-45 (352)
387 PRK15134 microcin C ABC transp 91.2 0.13 2.8E-06 43.1 2.0 18 87-104 39-56 (529)
388 PRK13636 cbiO cobalt transport 91.2 0.14 3.1E-06 39.6 2.1 18 87-104 36-53 (283)
389 PRK13643 cbiO cobalt transport 91.2 0.14 3.1E-06 39.8 2.0 18 87-104 36-53 (288)
390 cd03275 ABC_SMC1_euk Eukaryoti 91.2 0.14 3E-06 38.8 1.9 19 87-105 26-44 (247)
391 PF13481 AAA_25: AAA domain; P 91.1 0.18 3.9E-06 35.9 2.4 17 87-103 36-52 (193)
392 TIGR01526 nadR_NMN_Atrans nico 91.1 0.14 3.1E-06 41.0 2.0 18 86-103 165-182 (325)
393 PRK13637 cbiO cobalt transport 91.1 0.15 3.2E-06 39.6 2.0 18 87-104 37-54 (287)
394 PRK13644 cbiO cobalt transport 91.1 0.15 3.2E-06 39.3 2.1 18 87-104 32-49 (274)
395 PRK14264 phosphate ABC transpo 91.0 0.15 3.3E-06 40.0 2.1 18 87-104 75-92 (305)
396 cd03213 ABCG_EPDR ABCG transpo 91.0 0.15 3.4E-06 37.1 2.0 18 87-104 39-56 (194)
397 PRK13631 cbiO cobalt transport 91.0 0.15 3.3E-06 40.5 2.1 18 87-104 56-73 (320)
398 PLN02348 phosphoribulokinase 91.0 0.24 5.2E-06 41.4 3.3 18 87-104 53-70 (395)
399 PRK10463 hydrogenase nickel in 91.0 0.19 4.1E-06 40.3 2.6 17 87-103 108-124 (290)
400 PRK10938 putative molybdenum t 91.0 0.15 3.2E-06 42.2 2.0 18 87-104 33-50 (490)
401 cd03217 ABC_FeS_Assembly ABC-t 91.0 0.16 3.4E-06 37.2 2.0 18 87-104 30-47 (200)
402 TIGR03269 met_CoM_red_A2 methy 90.9 0.15 3.2E-06 42.6 2.0 18 87-104 30-47 (520)
403 PRK13765 ATP-dependent proteas 90.9 0.21 4.6E-06 43.9 3.0 41 62-104 31-71 (637)
404 smart00177 ARF ARF-like small 90.9 0.24 5.2E-06 35.1 2.9 19 85-103 15-33 (175)
405 cd03283 ABC_MutS-like MutS-lik 90.9 0.16 3.4E-06 37.8 2.0 17 87-103 29-45 (199)
406 TIGR02633 xylG D-xylose ABC tr 90.9 0.15 3.2E-06 42.3 2.0 18 87-104 31-48 (500)
407 PRK11000 maltose/maltodextrin 90.9 0.15 3.2E-06 41.4 2.0 18 87-104 33-50 (369)
408 TIGR00968 3a0106s01 sulfate AB 90.9 0.16 3.4E-06 38.1 2.0 18 87-104 30-47 (237)
409 PRK10762 D-ribose transporter 90.9 0.15 3.2E-06 42.4 2.0 18 87-104 34-51 (501)
410 TIGR03797 NHPM_micro_ABC2 NHPM 90.9 0.16 3.4E-06 43.8 2.2 19 86-104 482-500 (686)
411 cd03300 ABC_PotA_N PotA is an 90.9 0.17 3.6E-06 37.7 2.1 18 87-104 30-47 (232)
412 PRK04841 transcriptional regul 90.9 0.25 5.3E-06 43.0 3.4 33 71-103 19-52 (903)
413 PRK13851 type IV secretion sys 90.9 0.32 7E-06 39.6 3.9 20 86-105 165-184 (344)
414 PRK14254 phosphate ABC transpo 90.9 0.16 3.4E-06 39.5 2.0 18 87-104 69-86 (285)
415 PRK10416 signal recognition pa 90.8 0.16 3.4E-06 40.8 2.0 17 87-103 118-134 (318)
416 PRK15064 ABC transporter ATP-b 90.8 0.16 3.4E-06 42.6 2.0 18 87-104 31-48 (530)
417 PRK10820 DNA-binding transcrip 90.8 0.29 6.3E-06 41.5 3.6 43 63-105 205-249 (520)
418 CHL00095 clpC Clp protease ATP 90.7 0.23 4.9E-06 44.4 3.1 42 62-103 509-559 (821)
419 PRK00149 dnaA chromosomal repl 90.7 0.16 3.4E-06 42.0 2.0 19 87-105 152-170 (450)
420 TIGR00073 hypB hydrogenase acc 90.7 0.17 3.6E-06 37.3 1.9 18 87-104 26-43 (207)
421 PRK13635 cbiO cobalt transport 90.7 0.17 3.7E-06 39.1 2.0 18 87-104 37-54 (279)
422 cd01855 YqeH YqeH. YqeH is an 90.7 0.32 6.8E-06 35.0 3.3 34 71-104 113-148 (190)
423 PRK14263 phosphate ABC transpo 90.6 0.17 3.7E-06 38.7 2.0 18 87-104 38-55 (261)
424 PRK11174 cysteine/glutathione 90.6 0.17 3.7E-06 42.6 2.2 19 86-104 379-397 (588)
425 PRK13642 cbiO cobalt transport 90.6 0.18 3.8E-06 38.9 2.0 18 87-104 37-54 (277)
426 cd03299 ABC_ModC_like Archeal 90.6 0.18 3.8E-06 37.8 2.0 18 87-104 29-46 (235)
427 PRK13634 cbiO cobalt transport 90.6 0.17 3.8E-06 39.3 2.0 18 87-104 37-54 (290)
428 PRK13549 xylose transporter AT 90.6 0.16 3.5E-06 42.2 2.0 18 87-104 292-309 (506)
429 PRK05703 flhF flagellar biosyn 90.6 0.17 3.6E-06 42.2 2.0 17 87-103 225-241 (424)
430 PRK13549 xylose transporter AT 90.6 0.17 3.6E-06 42.2 2.0 18 87-104 35-52 (506)
431 PRK09435 membrane ATPase/prote 90.5 0.33 7.2E-06 39.4 3.7 33 71-103 42-76 (332)
432 TIGR00064 ftsY signal recognit 90.5 0.18 3.8E-06 39.5 2.0 17 87-103 76-92 (272)
433 cd03289 ABCC_CFTR2 The CFTR su 90.5 0.18 3.9E-06 39.3 2.1 18 87-104 34-51 (275)
434 PRK11889 flhF flagellar biosyn 90.5 0.17 3.7E-06 42.9 2.0 17 87-103 245-261 (436)
435 PF01695 IstB_IS21: IstB-like 90.5 0.22 4.7E-06 36.5 2.3 18 86-103 50-67 (178)
436 PRK15439 autoinducer 2 ABC tra 90.5 0.18 3.8E-06 42.2 2.1 18 87-104 41-58 (510)
437 PRK10982 galactose/methyl gala 90.4 0.17 3.6E-06 41.9 1.9 18 87-104 278-295 (491)
438 COG3842 PotA ABC-type spermidi 90.4 0.17 3.8E-06 41.6 2.0 17 87-103 35-51 (352)
439 PRK15064 ABC transporter ATP-b 90.4 0.18 3.8E-06 42.3 2.0 18 87-104 349-366 (530)
440 PRK10261 glutathione transport 90.4 0.17 3.8E-06 43.5 2.0 18 87-104 46-63 (623)
441 PRK09361 radB DNA repair and r 90.4 0.19 4E-06 37.2 1.9 18 87-104 27-44 (225)
442 TIGR01193 bacteriocin_ABC ABC- 90.4 0.17 3.7E-06 43.7 2.0 19 86-104 503-521 (708)
443 PRK08533 flagellar accessory p 90.3 0.19 4.1E-06 38.2 2.0 16 87-102 28-43 (230)
444 PRK09700 D-allose transporter 90.3 0.18 3.8E-06 42.0 2.0 18 87-104 35-52 (510)
445 PRK15134 microcin C ABC transp 90.3 0.18 3.9E-06 42.2 2.0 18 87-104 316-333 (529)
446 PRK10982 galactose/methyl gala 90.3 0.18 3.9E-06 41.8 1.9 18 87-104 28-45 (491)
447 PRK09700 D-allose transporter 90.3 0.18 3.9E-06 41.9 2.0 18 87-104 293-310 (510)
448 PRK11288 araG L-arabinose tran 90.3 0.18 4E-06 41.9 2.0 18 87-104 34-51 (501)
449 PRK13633 cobalt transporter AT 90.3 0.2 4.2E-06 38.7 2.0 18 87-104 40-57 (280)
450 PF05970 PIF1: PIF1-like helic 90.2 0.35 7.6E-06 39.0 3.6 32 73-104 12-43 (364)
451 PLN02165 adenylate isopentenyl 90.2 0.19 4.1E-06 41.1 2.0 17 87-103 47-63 (334)
452 cd03288 ABCC_SUR2 The SUR doma 90.2 0.21 4.5E-06 38.0 2.1 18 87-104 51-68 (257)
453 PRK11432 fbpC ferric transport 90.2 0.19 4.1E-06 40.6 2.0 18 87-104 36-53 (351)
454 PF13555 AAA_29: P-loop contai 90.1 0.23 5E-06 31.3 1.9 18 87-104 27-44 (62)
455 PHA02244 ATPase-like protein 90.1 0.36 7.7E-06 40.3 3.6 21 85-105 121-141 (383)
456 TIGR02329 propionate_PrpR prop 90.1 0.36 7.8E-06 41.4 3.7 43 63-105 213-257 (526)
457 PRK10762 D-ribose transporter 90.1 0.19 4.2E-06 41.7 2.0 18 87-104 282-299 (501)
458 PRK15439 autoinducer 2 ABC tra 90.1 0.19 4.1E-06 42.0 1.9 18 87-104 293-310 (510)
459 PLN03071 GTP-binding nuclear p 90.1 0.22 4.7E-06 37.1 2.1 19 85-103 15-33 (219)
460 PRK07952 DNA replication prote 90.0 0.2 4.4E-06 38.8 1.9 18 87-104 103-120 (244)
461 cd03270 ABC_UvrA_I The excisio 90.0 0.18 4E-06 37.8 1.7 14 87-100 25-38 (226)
462 TIGR03345 VI_ClpV1 type VI sec 90.0 0.43 9.3E-06 43.1 4.2 42 62-103 566-616 (852)
463 PRK10261 glutathione transport 90.0 0.2 4.3E-06 43.1 2.1 18 87-104 354-371 (623)
464 PRK11819 putative ABC transpor 90.0 0.2 4.3E-06 42.4 2.0 18 87-104 354-371 (556)
465 TIGR03796 NHPM_micro_ABC1 NHPM 90.0 0.19 4.2E-06 43.4 2.0 19 86-104 508-526 (710)
466 COG1119 ModF ABC-type molybden 90.0 0.21 4.5E-06 39.7 2.0 17 87-103 61-77 (257)
467 PRK15424 propionate catabolism 90.0 0.37 8E-06 41.5 3.6 44 62-105 219-264 (538)
468 cd01858 NGP_1 NGP-1. Autoanti 89.9 0.25 5.4E-06 34.6 2.2 18 87-104 106-123 (157)
469 PRK12377 putative replication 89.9 0.21 4.5E-06 38.9 1.9 19 86-104 104-122 (248)
470 PRK12724 flagellar biosynthesi 89.9 0.2 4.4E-06 42.3 2.0 17 87-103 227-243 (432)
471 cd03274 ABC_SMC4_euk Eukaryoti 89.9 0.21 4.6E-06 37.4 1.9 18 87-104 29-46 (212)
472 TIGR03269 met_CoM_red_A2 methy 89.9 0.21 4.5E-06 41.7 2.1 18 87-104 314-331 (520)
473 PRK10522 multidrug transporter 89.9 0.22 4.8E-06 41.8 2.2 19 86-104 352-370 (547)
474 PRK14257 phosphate ABC transpo 89.9 0.21 4.6E-06 39.9 2.1 18 87-104 112-129 (329)
475 PRK10938 putative molybdenum t 89.9 0.2 4.4E-06 41.4 2.0 18 87-104 290-307 (490)
476 COG2884 FtsE Predicted ATPase 89.9 0.22 4.9E-06 38.7 2.1 19 87-105 32-50 (223)
477 PRK14246 phosphate ABC transpo 89.9 0.21 4.6E-06 38.1 2.0 17 87-103 40-56 (257)
478 PLN03118 Rab family protein; P 89.9 0.22 4.9E-06 36.3 2.0 19 85-103 16-34 (211)
479 TIGR01842 type_I_sec_PrtD type 89.8 0.23 5E-06 41.6 2.2 19 86-104 347-365 (544)
480 PRK10851 sulfate/thiosulfate t 89.8 0.22 4.7E-06 40.3 2.0 18 87-104 32-49 (353)
481 cd01393 recA_like RecA is a b 89.7 0.22 4.7E-06 36.5 1.8 19 85-103 20-39 (226)
482 COG0470 HolB ATPase involved i 89.7 0.57 1.2E-05 35.7 4.2 41 63-103 2-44 (325)
483 PRK03003 GTP-binding protein D 89.6 0.38 8.3E-06 40.1 3.4 19 86-104 41-59 (472)
484 PRK14722 flhF flagellar biosyn 89.6 0.22 4.8E-06 41.1 2.0 17 87-103 141-157 (374)
485 PLN02674 adenylate kinase 89.6 0.23 5.1E-06 38.7 2.0 18 86-103 34-51 (244)
486 PRK11650 ugpC glycerol-3-phosp 89.6 0.23 4.9E-06 40.2 2.0 18 87-104 34-51 (356)
487 TIGR03719 ABC_ABC_ChvD ATP-bin 89.6 0.22 4.7E-06 42.1 1.9 18 87-104 352-369 (552)
488 PF02562 PhoH: PhoH-like prote 89.6 0.26 5.6E-06 37.6 2.2 35 65-102 3-38 (205)
489 COG0396 sufC Cysteine desulfur 89.6 0.23 5E-06 39.3 1.9 17 87-103 34-50 (251)
490 KOG1969 DNA replication checkp 89.5 0.2 4.3E-06 45.4 1.7 17 87-103 330-346 (877)
491 PLN00223 ADP-ribosylation fact 89.5 0.25 5.4E-06 35.5 2.0 20 85-104 19-38 (181)
492 TIGR03522 GldA_ABC_ATP gliding 89.5 0.24 5.1E-06 38.8 2.0 18 87-104 32-49 (301)
493 TIGR02857 CydD thiol reductant 89.5 0.25 5.3E-06 41.1 2.2 19 86-104 351-369 (529)
494 PF06068 TIP49: TIP49 C-termin 89.5 0.6 1.3E-05 39.2 4.4 42 62-103 24-70 (398)
495 COG1855 ATPase (PilT family) [ 89.5 0.3 6.4E-06 42.4 2.7 33 71-104 252-284 (604)
496 COG0410 LivF ABC-type branched 89.4 0.25 5.3E-06 38.9 2.0 18 87-104 33-50 (237)
497 PRK10070 glycine betaine trans 89.4 0.23 5E-06 41.1 1.9 18 87-104 58-75 (400)
498 PRK10636 putative ABC transpor 89.4 0.23 5E-06 43.0 2.0 19 86-104 30-48 (638)
499 PRK11819 putative ABC transpor 89.4 0.24 5.2E-06 41.9 2.0 18 87-104 37-54 (556)
500 KOG0062 ATPase component of AB 89.3 0.24 5.1E-06 43.2 2.0 19 85-103 108-126 (582)
No 1
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.70 E-value=1.7e-08 Score=76.33 Aligned_cols=39 Identities=26% Similarity=0.464 Sum_probs=32.3
Q ss_pred cchhHHHHHHHHhcCCCC-Cc-ceEecCCCcHHHHHHhhhc
Q 046733 67 RDGDRNKIINRLSALNDV-DT-VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 67 rd~~~~~lv~~L~~~~~~-~~-~IvGmGGiGKTTLA~~Vy~ 105 (106)
||.++++|.+.|...... .+ .|+||||+||||||..+|+
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~ 41 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVAR 41 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccc
Confidence 678999999999875432 34 9999999999999999875
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.68 E-value=1.4e-08 Score=91.82 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=36.6
Q ss_pred CceeecchhHHHHHHHHhcCCC-CCc-ceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSALND-VDT-VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~-~~~-~IvGmGGiGKTTLA~~Vy~ 105 (106)
.++||++...++|..+|..... .++ +||||||+||||||+.+|+
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~ 229 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS 229 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH
Confidence 5799999999999988854332 244 9999999999999999985
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.66 E-value=1.7e-08 Score=90.11 Aligned_cols=54 Identities=26% Similarity=0.288 Sum_probs=45.2
Q ss_pred ccccccccccccCCCceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhhc
Q 046733 48 KTLGEALNFFSKYNKFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 48 ~~~~~t~s~~~e~~~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy~ 105 (106)
+..+++.+...+ .+ ||.+..++++.+.|+..+. .+ +|+||||+||||||+.||+
T Consensus 147 ~~~~e~~~~~~~--~~-VG~e~~~~kl~~~L~~d~~-~iv~i~GMGGvGKTTL~~qi~N 201 (889)
T KOG4658|consen 147 REKVETRPIQSE--SD-VGLETMLEKLWNRLMEDDV-GIVGIYGMGGVGKTTLARQIFN 201 (889)
T ss_pred hhhcccCCCCcc--cc-ccHHHHHHHHHHHhccCCC-CEEEEECCCcccHHHHHHHHhc
Confidence 445666666666 55 9999999999999988666 45 9999999999999999986
No 4
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.88 E-value=7.6e-06 Score=57.56 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=28.4
Q ss_pred eeecchhHHHHHHHHhcCC--CCCc-ceEecCCCcHHHHHHhhhc
Q 046733 64 AYGRDGDRNKIINRLSALN--DVDT-VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 64 vvGrd~~~~~lv~~L~~~~--~~~~-~IvGmGGiGKTTLA~~Vy~ 105 (106)
++||+++.+.+...|.... ..+. -|+|..|+|||+|.+.+++
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999884221 2233 8889999999999997653
No 5
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.70 E-value=4.8e-05 Score=49.82 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=30.0
Q ss_pred ecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhhc
Q 046733 66 GRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 66 Grd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
|++...+.+...+.......+-|+|..|+|||||++.++.
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~ 41 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIAN 41 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 6677777777776543233348999999999999998864
No 6
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.67 E-value=3.1e-05 Score=55.63 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=30.6
Q ss_pred eeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 64 AYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 64 vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+||+.+.++|.+++.......+.|+|..|+|||+|.+.+.
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~ 41 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFI 41 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHH
Confidence 47999999999998865433333888999999999999764
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.55 E-value=0.00011 Score=57.75 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=35.1
Q ss_pred CceeecchhHHHHHHHHhc---CCC-CCcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSA---LND-VDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~---~~~-~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
..++||+++.+.|...|.. ... ..+-|+|..|+|||++++.++.
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~ 62 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMK 62 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999998853 111 2348899999999999998863
No 8
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.36 E-value=0.00019 Score=63.60 Aligned_cols=42 Identities=19% Similarity=0.429 Sum_probs=36.4
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V 103 (106)
..++||+++.++++..|......++-++|..|+|||++|+.+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~l 220 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGL 220 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHH
Confidence 468999999999999998765555689999999999999865
No 9
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.35 E-value=0.00018 Score=55.39 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=33.0
Q ss_pred CceeecchhHHHHHHHHhcC---CC-C-CcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSAL---ND-V-DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~---~~-~-~~~IvGmGGiGKTTLA~~Vy 104 (106)
.++||+++.++.|..++... .. . .+-++|+.|+|||+||+.+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia 51 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIA 51 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 46899999999988877531 11 1 23788999999999999864
No 10
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.22 E-value=0.00035 Score=62.49 Aligned_cols=42 Identities=24% Similarity=0.437 Sum_probs=36.2
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V 103 (106)
..++||+++.++++..|......+.-++|..|+||||||..+
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~L 228 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGL 228 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHH
Confidence 468999999999999997765555578999999999999865
No 11
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.19 E-value=0.00046 Score=54.86 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=34.8
Q ss_pred CceeecchhHHHHHHHHhcC---CC-CCcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSAL---ND-VDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~---~~-~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
..++||+++.+.|...|... .. ..+-|+|..|+|||++++.++.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~ 77 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFE 77 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 57999999999998887432 11 1338899999999999998863
No 12
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.19 E-value=0.00041 Score=60.69 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=36.2
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
..++||+++.++++..|......++-++|..|+|||+||+.+-
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la 224 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLA 224 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHH
Confidence 3699999999999988876655556888999999999998753
No 13
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.14 E-value=0.00047 Score=61.63 Aligned_cols=42 Identities=24% Similarity=0.425 Sum_probs=36.1
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V 103 (106)
..++||+++.++++..|......+.-++|..|+|||+||..+
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~l 219 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGL 219 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHH
Confidence 469999999999999998765555588899999999999864
No 14
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.03 E-value=0.00062 Score=53.70 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=32.9
Q ss_pred CceeecchhHHHHHHHHhcC---CC-C-CcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSAL---ND-V-DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~---~~-~-~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|+++.++.+..++... .. . .+-|+|+.|+||||||+.+.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia 72 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIA 72 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHH
Confidence 46999999999887776431 11 1 23788999999999999874
No 15
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.98 E-value=0.00049 Score=56.20 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=29.3
Q ss_pred ceeecchhHHH---HHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 63 FAYGRDGDRNK---IINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 63 ~vvGrd~~~~~---lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
++||+++.+.. |..++.......+-++|..|+||||||+.+.
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia 57 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIA 57 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHH
Confidence 57787765444 5555544333334788999999999999875
No 16
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.90 E-value=0.0011 Score=59.10 Aligned_cols=42 Identities=26% Similarity=0.441 Sum_probs=35.4
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V 103 (106)
..++||+++.++++..|......+.-++|..|+|||+||..+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~l 214 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGL 214 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHH
Confidence 359999999999999997755445578899999999999865
No 17
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.86 E-value=0.0014 Score=50.80 Aligned_cols=44 Identities=14% Similarity=0.003 Sum_probs=34.7
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy~ 105 (106)
.+++|.++.++.+..++......+. -++|..|+||||+|+.++.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~ 65 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCN 65 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHH
Confidence 4689999999999988865433333 5579999999999998753
No 18
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.84 E-value=0.0013 Score=54.17 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=37.7
Q ss_pred ccccccccCCCceeecchhHHHHHHHHhcCCC----C-Cc-ceEecCCCcHHHHHHhh
Q 046733 52 EALNFFSKYNKFAYGRDGDRNKIINRLSALND----V-DT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 52 ~t~s~~~e~~~~vvGrd~~~~~lv~~L~~~~~----~-~~-~IvGmGGiGKTTLA~~V 103 (106)
....++. .+++|.++.++++++++..... . .+ .++|..|.||||||+.+
T Consensus 44 ~~y~~F~---~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~L 98 (361)
T smart00763 44 KRYRFFD---HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECL 98 (361)
T ss_pred eeccccc---hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHH
Confidence 3444554 3799999999999999864221 1 33 89999999999999976
No 19
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.81 E-value=0.0013 Score=56.94 Aligned_cols=44 Identities=11% Similarity=0.168 Sum_probs=34.7
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
++++|++.....+.+.+.......+-|+|..|+||||||+.++.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~ 197 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALE 197 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999888888777543333458899999999999998864
No 20
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.72 E-value=0.0018 Score=57.45 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=36.6
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
..++||+++.++++..|......++-++|..|+|||+||+.+.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la 228 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHH
Confidence 4699999999999998877554455889999999999999865
No 21
>PRK06696 uridine kinase; Validated
Probab=96.71 E-value=0.0019 Score=48.33 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=26.9
Q ss_pred cchhHHHHHHHHhcCCCC-C-c-ceEecCCCcHHHHHHhhh
Q 046733 67 RDGDRNKIINRLSALNDV-D-T-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 67 rd~~~~~lv~~L~~~~~~-~-~-~IvGmGGiGKTTLA~~Vy 104 (106)
|++-++.|.+.+...... . + .|-|.+|.||||||+.+-
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~ 43 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELA 43 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 445566777777543322 2 2 889999999999999764
No 22
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.65 E-value=0.0023 Score=48.98 Aligned_cols=43 Identities=14% Similarity=0.116 Sum_probs=34.1
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|+++.++.+..++.......+-++|..|.||||+|+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~ 59 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALA 59 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 4688999989888888865333234788999999999999864
No 23
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.60 E-value=0.0016 Score=50.83 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=27.4
Q ss_pred CceeecchhHHHHHHHHhc--CCCC---CcceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSA--LNDV---DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~--~~~~---~~~IvGmGGiGKTTLA~~V 103 (106)
.++||.++-++.+.-++.. .+.. .+-.+|.+|+||||||..+
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~II 70 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARII 70 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHH
Confidence 4699999877775444422 1111 2377899999999999975
No 24
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.59 E-value=0.0025 Score=49.22 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=32.9
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|++..++.+..++.......+-++|..|+||||+|+.+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~ 57 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALA 57 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHH
Confidence 4688999988888887755432224788999999999998753
No 25
>PTZ00202 tuzin; Provisional
Probab=96.56 E-value=0.004 Score=53.52 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=34.3
Q ss_pred CceeecchhHHHHHHHHhcCCCC--Cc-ceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDV--DT-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~--~~-~IvGmGGiGKTTLA~~Vy 104 (106)
..++||+.+...|...|...+.. .+ .|.|+.|.|||||++.+.
T Consensus 262 ~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~ 307 (550)
T PTZ00202 262 RQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAV 307 (550)
T ss_pred cCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 68999999999998887543322 34 889999999999988754
No 26
>PRK07667 uridine kinase; Provisional
Probab=96.48 E-value=0.0038 Score=45.92 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=25.3
Q ss_pred hHHHHHHHHhcCCCCCc--ceEecCCCcHHHHHHhhh
Q 046733 70 DRNKIINRLSALNDVDT--VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 70 ~~~~lv~~L~~~~~~~~--~IvGmGGiGKTTLA~~Vy 104 (106)
+.+.|++.|......+. .|-|..|.||||||+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~ 38 (193)
T PRK07667 2 STNELINIMKKHKENRFILGIDGLSRSGKTTFVANLK 38 (193)
T ss_pred CHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 35667766654443333 888999999999999764
No 27
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.46 E-value=0.0029 Score=53.60 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=33.4
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.++++.++..+.++..|.... ++-+.|++|+|||++|+.+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~--~iil~GppGtGKT~lA~~la 215 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKK--NIILQGPPGVGKTFVARRLA 215 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHH
Confidence 468888889999998886432 34888999999999999874
No 28
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.43 E-value=0.0034 Score=50.54 Aligned_cols=42 Identities=21% Similarity=0.220 Sum_probs=33.3
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V 103 (106)
.+++|.++-++.+.+.+...+.... -+.|..|+||||+|+.+
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~l 58 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLL 58 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHH
Confidence 4699999989888887765443332 68899999999999875
No 29
>PLN03025 replication factor C subunit; Provisional
Probab=96.36 E-value=0.0042 Score=48.90 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=31.9
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++-++.|..++.......+-++|..|+||||+|+.+-
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la 55 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALA 55 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHH
Confidence 3688988877777766654333234788999999999999753
No 30
>PRK04195 replication factor C large subunit; Provisional
Probab=96.25 E-value=0.0035 Score=52.26 Aligned_cols=43 Identities=12% Similarity=0.216 Sum_probs=34.2
Q ss_pred CceeecchhHHHHHHHHhcCCC---CC-cceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALND---VD-TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~---~~-~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.++.|.+|+..-.. .. +-|+|..|+||||+|+.+.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala 60 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALA 60 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 4699999999999999864221 22 3788999999999999874
No 31
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.25 E-value=0.0058 Score=44.74 Aligned_cols=37 Identities=14% Similarity=-0.014 Sum_probs=24.4
Q ss_pred hhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhhc
Q 046733 69 GDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 69 ~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
...+.+..++.......+-|+|..|+|||+||+.+++
T Consensus 24 ~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~ 60 (226)
T TIGR03420 24 ELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACA 60 (226)
T ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3455555554322222347889999999999998753
No 32
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.25 E-value=0.004 Score=55.09 Aligned_cols=43 Identities=19% Similarity=0.097 Sum_probs=29.3
Q ss_pred ceeecchhHH---HHHHHHhcCCCCCcceEecCCCcHHHHHHhhhc
Q 046733 63 FAYGRDGDRN---KIINRLSALNDVDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 63 ~vvGrd~~~~---~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+++|.+.-+. .+...+.......+-++|..|+||||||+.+.+
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5888886654 344444333222347889999999999998753
No 33
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.22 E-value=0.0025 Score=49.52 Aligned_cols=20 Identities=25% Similarity=0.219 Sum_probs=18.5
Q ss_pred cceEecCCCcHHHHHHhhhc
Q 046733 86 TVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+.|+|.+|+|||||++.+|+
T Consensus 19 ~~I~G~~G~GKTTLlr~I~n 38 (249)
T cd01128 19 GLIVAPPKAGKTTLLQSIAN 38 (249)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 49999999999999999985
No 34
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.22 E-value=0.004 Score=52.37 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=25.7
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V 103 (106)
.+++|.+...+++++ .....+.-.||..|+||||||+.+
T Consensus 30 ~HLlg~~~~lrr~v~---~~~l~SmIl~GPPG~GKTTlA~li 68 (436)
T COG2256 30 EHLLGEGKPLRRAVE---AGHLHSMILWGPPGTGKTTLARLI 68 (436)
T ss_pred HhhhCCCchHHHHHh---cCCCceeEEECCCCCCHHHHHHHH
Confidence 445555555555554 222223377899999999999976
No 35
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.19 E-value=0.0049 Score=49.37 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=32.9
Q ss_pred CceeecchhHHHHHHHHhcC--C-----------CCCcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSAL--N-----------DVDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~--~-----------~~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
.++.|+++.++.|.+.+... . ...+-++|..|+|||+||+++.+
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~ 178 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 178 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46889999999998876321 1 01137789999999999998863
No 36
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.17 E-value=0.0057 Score=49.54 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=33.7
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V 103 (106)
..+||.++-+..++-.+.+.....+-|.|..|.|||||++.+
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~ 45 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRAL 45 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHH
Confidence 468999988888766666644445689999999999999986
No 37
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.16 E-value=0.0054 Score=50.02 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=32.2
Q ss_pred CceeecchhHHHHHHHHhc---CC----------CCCcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSA---LN----------DVDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~---~~----------~~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
.++.|+++.+++|.+.+.. .. ...+-++|..|.|||+||+++.+
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence 3688999999998876532 10 01236789999999999998864
No 38
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.006 Score=54.66 Aligned_cols=41 Identities=29% Similarity=0.428 Sum_probs=34.8
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKN 102 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~ 102 (106)
.-|+||+++.++++..|++....+--.||-.|+|||+++.-
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEG 210 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEG 210 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHH
Confidence 35999999999999999887665547789999999998864
No 39
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.10 E-value=0.006 Score=51.41 Aligned_cols=42 Identities=26% Similarity=0.286 Sum_probs=31.8
Q ss_pred CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V 103 (106)
.++||.++-+..|...+...+-.. +-++|..|+||||+|+.+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 469999887777777665543322 257899999999999976
No 40
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.08 E-value=0.0036 Score=46.99 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=17.6
Q ss_pred cceEecCCCcHHHHHHhhhc
Q 046733 86 TVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+.|+|..|+|||||++.++.
T Consensus 46 ~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 38899999999999998763
No 41
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.08 E-value=0.004 Score=50.89 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=35.8
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+.+||.++-+..|+..+.++.-..+-|.|--|.||||+|+.+|.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 57999998888887766665444457889999999999999875
No 42
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.98 E-value=0.0084 Score=46.82 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=33.4
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V 103 (106)
.+++|.++.++.|.+++........ -++|..|+||||+|+.+
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~l 56 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIF 56 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4689999999999988865443333 67899999999999765
No 43
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.97 E-value=0.0061 Score=46.62 Aligned_cols=43 Identities=19% Similarity=0.107 Sum_probs=28.0
Q ss_pred CceeecchhHHHHHH---HHhc------CCC---C---CcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIIN---RLSA------LND---V---DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~---~L~~------~~~---~---~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++-++.|.+ ++.. ... . ++-++|..|+||||+|+.+.
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHH
Confidence 358898877766643 3311 000 1 12578999999999999874
No 44
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.0056 Score=54.60 Aligned_cols=42 Identities=29% Similarity=0.417 Sum_probs=33.4
Q ss_pred CceeecchhHHHHHHHHhcCC---C--CCc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALN---D--VDT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~---~--~~~-~IvGmGGiGKTTLA~~V 103 (106)
.+-.|.++-+++|++.|.-.. . ..+ ..||.+|+|||.|++.|
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSI 370 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSI 370 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHH
Confidence 478899999999999984211 1 123 88899999999999976
No 45
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.0085 Score=51.56 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=33.9
Q ss_pred CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.+..++.|...+...+... +-++|..|+||||+|+.+.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 469999999988888886544333 2578999999999998763
No 46
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=95.82 E-value=0.012 Score=46.17 Aligned_cols=43 Identities=28% Similarity=0.383 Sum_probs=34.5
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.+.-++.+..++...+-... -++|..|+||||||+.+.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a 47 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIA 47 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHH
Confidence 4688998888999988866544444 788999999999998754
No 47
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.81 E-value=0.011 Score=44.28 Aligned_cols=18 Identities=28% Similarity=0.243 Sum_probs=16.2
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|.|..|.|||||++.+.
T Consensus 37 gi~G~~GsGKTTl~~~L~ 54 (229)
T PRK09270 37 GIAGPPGAGKSTLAEFLE 54 (229)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 899999999999999753
No 48
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.77 E-value=0.01 Score=50.48 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=34.0
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V 103 (106)
.++||.+.-++.|.+++...+-... -.+|..|+||||+|+.+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~l 58 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRIL 58 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHH
Confidence 4699999999999998866544332 67899999999999864
No 49
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.76 E-value=0.0088 Score=51.20 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=32.4
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
..++|+++.++.++.-+.... ++-|.|..|+|||+||+.+.
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa 60 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLK 60 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHH
Confidence 578999988888877665432 34888999999999999764
No 50
>PHA00729 NTP-binding motif containing protein
Probab=95.75 E-value=0.0091 Score=46.27 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=22.0
Q ss_pred HHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733 73 KIINRLSALNDVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 73 ~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V 103 (106)
++++.+......++-|.|..|+||||||..+
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aL 37 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKV 37 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHH
Confidence 3444444433334588999999999999986
No 51
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.74 E-value=0.011 Score=50.35 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=34.4
Q ss_pred ceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhhc
Q 046733 63 FAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 63 ~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+++|.+...+.+...+.......+-|+|..|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 6999998888888776544333457889999999999999863
No 52
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.70 E-value=0.012 Score=48.09 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=32.2
Q ss_pred CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V 103 (106)
.+++|.+.-++.|..++...+... +-++|..|+||||+|..+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHH
Confidence 468999888888888776544332 367899999999999864
No 53
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.68 E-value=0.01 Score=50.55 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=33.9
Q ss_pred CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V 103 (106)
.++||.+.-+..|..++...+... +-++|..|+||||+|+.+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 469999998888888887655333 378899999999999976
No 54
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.64 E-value=0.012 Score=51.74 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=33.3
Q ss_pred ceeecchhHHHHHHHHhcC----CCC-Cc-ceEecCCCcHHHHHHhhh
Q 046733 63 FAYGRDGDRNKIINRLSAL----NDV-DT-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 63 ~vvGrd~~~~~lv~~L~~~----~~~-~~-~IvGmGGiGKTTLA~~Vy 104 (106)
+++|.++.+++|++.|... ... .+ -++|..|.||||||+.+-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la 124 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLK 124 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHH
Confidence 5899999999999998321 111 34 888999999999999863
No 55
>PRK06547 hypothetical protein; Provisional
Probab=95.64 E-value=0.013 Score=42.94 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=15.7
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|.|..|.||||||+.+
T Consensus 19 ~i~G~~GsGKTt~a~~l 35 (172)
T PRK06547 19 LIDGRSGSGKTTLAGAL 35 (172)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 88899999999999976
No 56
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.61 E-value=0.0062 Score=51.11 Aligned_cols=19 Identities=37% Similarity=0.359 Sum_probs=17.9
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
-|+|.+|+||||||+.||+
T Consensus 173 lIvgppGvGKTTLaK~Ian 191 (416)
T PRK09376 173 LIVAPPKAGKTVLLQNIAN 191 (416)
T ss_pred EEeCCCCCChhHHHHHHHH
Confidence 8999999999999999985
No 57
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.55 E-value=0.014 Score=49.64 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=33.1
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++-++.|.+++....-... -++|..|+||||+|+.+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA 57 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIA 57 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3689999888888887765443233 678999999999998763
No 58
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.55 E-value=0.014 Score=51.73 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=34.0
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V 103 (106)
.++||.+.-++.|.+++...+.... -+.|..|+||||+|+.+
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriL 57 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARIL 57 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4699999999999998876543333 67899999999999864
No 59
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.51 E-value=0.014 Score=50.90 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=33.2
Q ss_pred CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V 103 (106)
.+++|.+.-++.+.+.+...+... +-+.|..|+||||+|+.+
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 469999998888888876544333 367899999999999875
No 60
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.50 E-value=0.013 Score=49.82 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=33.5
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V 103 (106)
.+++|.+.-++.|.+++...+-... -+.|..|+||||+|+.+
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~l 58 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARIL 58 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHH
Confidence 4689999989988888866544332 68899999999999875
No 61
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.47 E-value=0.015 Score=47.20 Aligned_cols=42 Identities=12% Similarity=0.152 Sum_probs=31.5
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V 103 (106)
..++|.++.++.+.-.+.......+-+.|..|.||||||+.+
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~l 49 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRAL 49 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHH
Confidence 578999988887764444333334578899999999999975
No 62
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.40 E-value=0.027 Score=41.74 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=17.5
Q ss_pred cceEecCCCcHHHHHHhhhc
Q 046733 86 TVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+-|+|..|+|||+||+.+++
T Consensus 45 ~~l~G~~G~GKT~La~ai~~ 64 (227)
T PRK08903 45 FYLWGEAGSGRSHLLQALVA 64 (227)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 37889999999999998763
No 63
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.40 E-value=0.016 Score=50.64 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=33.5
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V 103 (106)
.++||.+.-++.|.+++...+.... -++|.-|+||||+|+.+
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~l 58 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRIL 58 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4689988888888888876554333 67899999999999875
No 64
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.38 E-value=0.016 Score=51.37 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=34.2
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V 103 (106)
.++||.++-++.|.+.+...+-... -++|..|+||||+|+.+
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriL 58 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRIL 58 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHH
Confidence 4699999999999988876554433 67899999999999875
No 65
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.37 E-value=0.012 Score=48.03 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=29.8
Q ss_pred CceeecchhHHHHHHHHhcC---CCC-C-cceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSAL---NDV-D-TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~---~~~-~-~~IvGmGGiGKTTLA~~V 103 (106)
.+.||.++-++.+-=.+... ... + +-+.|..|+||||||..|
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~II 72 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHII 72 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHH
Confidence 46899888777765555322 111 2 378899999999999876
No 66
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.31 E-value=0.018 Score=51.24 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=34.1
Q ss_pred CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V 103 (106)
.++||.+.-++.|.+++...+... +-++|..|+||||+|+.+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriL 58 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARIL 58 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHH
Confidence 469999999999999887654332 377899999999999865
No 67
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.28 E-value=0.021 Score=41.62 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=30.8
Q ss_pred eeecchhHHHHHHHHhcCCC--CCcceEecCCCcHHHHHHhhhc
Q 046733 64 AYGRDGDRNKIINRLSALND--VDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 64 vvGrd~~~~~lv~~L~~~~~--~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+||......++++.+..-.. ..+-|+|-.|.||+.+|+.++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 47888888888887754333 2348889999999999999985
No 68
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.26 E-value=0.021 Score=49.61 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=34.0
Q ss_pred CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V 103 (106)
.+++|.+..++.|.+.+...+-.. +-+.|.-|+||||+|+.+
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~l 66 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARIL 66 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 469999999999998886654333 377899999999999875
No 69
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.26 E-value=0.022 Score=45.38 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=33.3
Q ss_pred CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V 103 (106)
.+++|.+..++.+.+.+....... +-++|..|+||||+|+.+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 468999999998888886543332 368899999999999865
No 70
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.18 E-value=0.03 Score=42.44 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=17.4
Q ss_pred cceEecCCCcHHHHHHhhhc
Q 046733 86 TVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+-|+|..|+|||+|++.+.+
T Consensus 48 l~l~Gp~G~GKThLl~a~~~ 67 (235)
T PRK08084 48 IYLWSREGAGRSHLLHAACA 67 (235)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 38999999999999998653
No 71
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.17 E-value=0.013 Score=43.01 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=16.3
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|+.|.||||||+.+-
T Consensus 28 ~i~G~~GsGKSTla~~l~ 45 (198)
T PRK03846 28 WFTGLSGSGKSTVAGALE 45 (198)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 899999999999999763
No 72
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.15 E-value=0.021 Score=52.10 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=34.2
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy 104 (106)
.++||.+.-++.|.+.+...+-... -++|..|+||||+|+.+.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLA 59 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFA 59 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4699999999988888866543333 588999999999999764
No 73
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.14 E-value=0.021 Score=50.20 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=33.4
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V 103 (106)
.++||.+.-++.|.+.+...+-... -++|.-|+||||+|+.+
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~l 58 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLL 58 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4699999988888888866544332 57899999999999875
No 74
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.12 E-value=0.022 Score=48.94 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=33.0
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V 103 (106)
.+++|.+.-++.|.+++........ -++|..|+||||+|+.+
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHH
Confidence 4699999988888888765443222 57899999999999875
No 75
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.11 E-value=0.025 Score=48.24 Aligned_cols=42 Identities=24% Similarity=0.229 Sum_probs=32.1
Q ss_pred CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V 103 (106)
.++||.+.-++.|.+.+...+-.. +-+.|..|+||||+|+.+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~Aril 55 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARII 55 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHH
Confidence 469999988888777775544332 367899999999999864
No 76
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.01 E-value=0.027 Score=39.01 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=17.1
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||.+.+.
T Consensus 17 v~i~G~~g~GKStLl~~l~ 35 (173)
T cd04155 17 ILILGLDNAGKTTILKQLA 35 (173)
T ss_pred EEEEccCCCCHHHHHHHHh
Confidence 4999999999999999875
No 77
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.98 E-value=0.025 Score=49.09 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=33.6
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V 103 (106)
.++||.+.-++.|.+++...+-... -+.|.-|+||||+|+.+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~l 55 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARIL 55 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4699999989999888876543332 57899999999999864
No 78
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.93 E-value=0.026 Score=47.90 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=15.8
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-.||..|.||||||+.+
T Consensus 166 IlWGppG~GKTtlArli 182 (554)
T KOG2028|consen 166 ILWGPPGTGKTTLARLI 182 (554)
T ss_pred EEecCCCCchHHHHHHH
Confidence 78999999999999976
No 79
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.90 E-value=0.03 Score=47.77 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=33.1
Q ss_pred CceeecchhHHHHHHHHhcCCCC-CcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDV-DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~-~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.+.-++.|.+.+...+-. .+-+.|..|+||||+|+.+.
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 36899999888887766554432 23678999999999999864
No 80
>PRK06893 DNA replication initiation factor; Validated
Probab=94.89 E-value=0.016 Score=43.66 Aligned_cols=19 Identities=26% Similarity=0.129 Sum_probs=17.0
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
-++|..|+|||+|++++.+
T Consensus 43 ~l~G~~G~GKThL~~ai~~ 61 (229)
T PRK06893 43 YIWGGKSSGKSHLLKAVSN 61 (229)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 6889999999999998753
No 81
>PRK06620 hypothetical protein; Validated
Probab=94.87 E-value=0.018 Score=43.38 Aligned_cols=18 Identities=28% Similarity=0.189 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
-|+|..|+|||+|++.+.
T Consensus 48 ~l~Gp~G~GKThLl~a~~ 65 (214)
T PRK06620 48 LIKGPSSSGKTYLTKIWQ 65 (214)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 889999999999999864
No 82
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.86 E-value=0.028 Score=50.68 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=33.5
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V 103 (106)
.++||.++-++.|.+++...+.... -++|.-|+||||+|+.+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriL 58 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIF 58 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4699999999999988866543333 67899999999999854
No 83
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.86 E-value=0.036 Score=43.77 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=29.1
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V 103 (106)
..++|.++....+...+..... +-+.|..|+|||+||+.+
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~~--vll~G~PG~gKT~la~~l 63 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGGH--VLLEGPPGVGKTLLARAL 63 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCCC--EEEECCCCccHHHHHHHH
Confidence 4588877777766555544322 378899999999999975
No 84
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.85 E-value=0.032 Score=42.76 Aligned_cols=40 Identities=13% Similarity=0.256 Sum_probs=28.7
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V 103 (106)
++|+|.+..++.|.--... .+++-++|..|+|||+||+.+
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l 42 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRL 42 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHH
Confidence 5789998877776543333 345689999999999999975
No 85
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.83 E-value=0.031 Score=50.25 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=33.7
Q ss_pred CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V 103 (106)
.+|||.+..++.|...|...+... +-+.|.-|+||||+|+.+
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~l 57 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARIL 57 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHH
Confidence 469999998888888887654433 367899999999999865
No 86
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.71 E-value=0.036 Score=48.42 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=32.1
Q ss_pred CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V 103 (106)
.+++|.+.-+..|.+.+...+... +-++|..|+||||+|..+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~l 58 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVF 58 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHH
Confidence 468999988888887775544333 367899999999999753
No 87
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.68 E-value=0.042 Score=43.05 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=27.0
Q ss_pred ceeecchhHHHHHHHHh---cC------C-C---C--CcceEecCCCcHHHHHHhh
Q 046733 63 FAYGRDGDRNKIINRLS---AL------N-D---V--DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 63 ~vvGrd~~~~~lv~~L~---~~------~-~---~--~~~IvGmGGiGKTTLA~~V 103 (106)
.++|.++-++.|.++.. .. . . . .+-++|..|.||||+|+.+
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~i 78 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRM 78 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHH
Confidence 68999877777655321 10 0 0 1 1257799999999999654
No 88
>CHL00181 cbbX CbbX; Provisional
Probab=94.67 E-value=0.037 Score=43.61 Aligned_cols=43 Identities=19% Similarity=0.101 Sum_probs=28.1
Q ss_pred CceeecchhHHHHHHH---HhcC------C---C-CC--cceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINR---LSAL------N---D-VD--TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~---L~~~------~---~-~~--~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++-++.|.++ +.-. . . .. +-+.|..|.||||+|+.+.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHH
Confidence 3689998777755443 2111 0 0 11 2567999999999999874
No 89
>PRK08727 hypothetical protein; Validated
Probab=94.63 E-value=0.046 Score=41.38 Aligned_cols=20 Identities=20% Similarity=0.184 Sum_probs=17.5
Q ss_pred cceEecCCCcHHHHHHhhhc
Q 046733 86 TVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+-|+|..|+|||.|++++++
T Consensus 44 l~l~G~~G~GKThL~~a~~~ 63 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCA 63 (233)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 38899999999999998753
No 90
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=94.57 E-value=0.044 Score=38.83 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=17.3
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+.|+|.+|+|||||...+.
T Consensus 21 ki~ilG~~~~GKStLi~~l~ 40 (190)
T cd00879 21 KILFLGLDNAGKTTLLHMLK 40 (190)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 34999999999999998764
No 91
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=94.54 E-value=0.045 Score=38.69 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 72 NKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 72 ~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
+.+.+++......++.++|..|+|||||...+.
T Consensus 4 ~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~ 36 (174)
T cd04153 4 SSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFL 36 (174)
T ss_pred hHHHHHhcCCCccEEEEECCCCCCHHHHHHHHc
Confidence 344554433222345899999999999998764
No 92
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.53 E-value=0.041 Score=46.02 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=29.0
Q ss_pred CceeecchhHHHHHHHH---hcCC-----CC----CcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRL---SALN-----DV----DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L---~~~~-----~~----~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.++++.+++ .... .. .+-++|..|.|||+||+.+.
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA 109 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVA 109 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHH
Confidence 46889887776665543 2211 01 22677999999999999874
No 93
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.53 E-value=0.025 Score=41.51 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 34 ~l~G~nGsGKSTLl~~i~ 51 (218)
T cd03255 34 AIVGPSGSGKSTLLNILG 51 (218)
T ss_pred EEEcCCCCCHHHHHHHHh
Confidence 999999999999999864
No 94
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.52 E-value=0.037 Score=46.86 Aligned_cols=42 Identities=19% Similarity=0.474 Sum_probs=31.0
Q ss_pred CceeecchhHHHHHHHHhcC-----------CC---CCcceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSAL-----------ND---VDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~-----------~~---~~~~IvGmGGiGKTTLA~~V 103 (106)
..++|.++.++.+...+... .. .++-++|..|+|||+||+.+
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraL 67 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRL 67 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHH
Confidence 47999999888886555421 00 12378899999999999975
No 95
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.49 E-value=0.048 Score=44.29 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=33.9
Q ss_pred CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V 103 (106)
..++|.++-.+.+...+...+-.. +-|.|.-|+||||||..+
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~l 65 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHL 65 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHH
Confidence 579999998888888886655433 378899999999999864
No 96
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.49 E-value=0.041 Score=45.98 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=33.3
Q ss_pred CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V 103 (106)
.+++|.+..++.|.+.+....... +-++|..|+||||+|+.+
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~l 59 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIF 59 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHH
Confidence 469999998888888886544333 267899999999999865
No 97
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.45 E-value=0.017 Score=47.17 Aligned_cols=19 Identities=26% Similarity=0.537 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
-++||.|.||||..|.++.
T Consensus 23 lVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 23 LVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred EEEecCCCCchhHHHHHHH
Confidence 7789999999999998764
No 98
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.43 E-value=0.038 Score=45.90 Aligned_cols=43 Identities=12% Similarity=0.308 Sum_probs=30.0
Q ss_pred CceeecchhHHHHHHHHhc-------C-C--------CCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSA-------L-N--------DVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~-------~-~--------~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
..|+|.++.++.|...+.. . . ..++-++|..|+|||+||+.+.
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA 129 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLA 129 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHH
Confidence 3699999888877443311 0 0 0123788999999999999864
No 99
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.40 E-value=0.027 Score=41.08 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 31 ~l~G~nGsGKSTLl~~l~ 48 (211)
T cd03225 31 LIVGPNGSGKSTLLRLLN 48 (211)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999874
No 100
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.36 E-value=0.06 Score=39.17 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=23.0
Q ss_pred hHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 70 DRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 70 ~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
+...++...... ...+.|+|..|.|||||.+.+.
T Consensus 13 ~~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~aL~ 46 (186)
T cd01130 13 LQAAYLWLAVEA-RKNILISGGTGSGKTTLLNALL 46 (186)
T ss_pred HHHHHHHHHHhC-CCEEEEECCCCCCHHHHHHHHH
Confidence 344445444432 2234999999999999998764
No 101
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.34 E-value=0.05 Score=46.06 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=33.4
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V 103 (106)
.+++|.+.-++.|.+.+........ -+.|..|+||||+|+.+
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~l 58 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARIL 58 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 3689999999999888866443333 57899999999999874
No 102
>PRK09087 hypothetical protein; Validated
Probab=94.33 E-value=0.029 Score=42.67 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=17.0
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+-|+|..|+|||+|++..+
T Consensus 47 l~l~G~~GsGKThLl~~~~ 65 (226)
T PRK09087 47 VVLAGPVGSGKTHLASIWR 65 (226)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3899999999999999765
No 103
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.32 E-value=0.029 Score=41.20 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 33 ~i~G~nGsGKSTLl~~l~ 50 (216)
T TIGR00960 33 FLVGHSGAGKSTFLKLIL 50 (216)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 104
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.29 E-value=0.049 Score=45.00 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=32.3
Q ss_pred CceeecchhHHHHHHHHhcCC---------CC-CcceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALN---------DV-DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~---------~~-~~~IvGmGGiGKTTLA~~V 103 (106)
.+|+|.+.-++.|.+.+.... .. .+-++|..|+|||++|..+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~l 56 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAF 56 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHH
Confidence 468999988888888886543 11 1257899999999999864
No 105
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.26 E-value=0.056 Score=43.06 Aligned_cols=44 Identities=18% Similarity=0.344 Sum_probs=35.2
Q ss_pred CceeecchhHHHHHHHHhcCCCC--CcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSALNDV--DTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~--~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
..++|.......+.+.+..-... .+-|+|-.|.||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 46899998888888887543332 358889999999999999874
No 106
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.25 E-value=0.059 Score=43.99 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=33.1
Q ss_pred CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKN 102 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~ 102 (106)
.+++|.++-++.|.+.+...+-.. +-+.|..|+||+|||..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~ 60 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYR 60 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHH
Confidence 479999988888888887655443 37889999999999975
No 107
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.21 E-value=0.031 Score=41.01 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 32 ~i~G~nGsGKSTLl~~l~ 49 (220)
T cd03263 32 GLLGHNGAGKTTTLKMLT 49 (220)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999875
No 108
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.19 E-value=0.032 Score=41.57 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 30 ~l~G~nGsGKSTLl~~l~ 47 (235)
T cd03261 30 AIIGPSGSGKSTLLRLIV 47 (235)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 109
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.10 E-value=0.033 Score=41.36 Aligned_cols=18 Identities=22% Similarity=0.505 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 31 ~i~G~nGsGKSTLl~~l~ 48 (241)
T cd03256 31 ALIGPSGAGKSTLLRCLN 48 (241)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 110
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.09 E-value=0.063 Score=41.34 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+-+.|..|+|||+||+.+.
T Consensus 24 vLL~G~~GtGKT~lA~~la 42 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVA 42 (262)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 3778999999999999864
No 111
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.09 E-value=0.034 Score=40.69 Aligned_cols=18 Identities=33% Similarity=0.626 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 32 ~l~G~nGsGKSTLl~~i~ 49 (214)
T TIGR02673 32 FLTGPSGAGKTTLLKLLY 49 (214)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999764
No 112
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=94.07 E-value=0.044 Score=48.51 Aligned_cols=43 Identities=26% Similarity=0.338 Sum_probs=32.3
Q ss_pred CceeecchhHHHHHHHHhcC----CCC-C-cceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSAL----NDV-D-TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~----~~~-~-~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++-++.|.+++... ... . +-++|..|+|||+||+.+-
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA 368 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIA 368 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 46899999999998876421 111 1 2788999999999999763
No 113
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.05 E-value=0.037 Score=39.79 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~i~G~nGsGKSTLl~~l~ 47 (178)
T cd03229 30 ALLGPSGSGKSTLLRCIA 47 (178)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 114
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.04 E-value=0.036 Score=40.54 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=17.1
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|.|||||.+.+.
T Consensus 28 ~~i~G~nGsGKSTLl~~l~ 46 (211)
T cd03264 28 YGLLGPNGAGKTTLMRILA 46 (211)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3999999999999999875
No 115
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.03 E-value=0.036 Score=40.88 Aligned_cols=18 Identities=33% Similarity=0.494 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 34 ~i~G~nGsGKSTLl~~l~ 51 (220)
T cd03293 34 ALVGPSGCGKSTLLRIIA 51 (220)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999874
No 116
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.03 E-value=0.035 Score=40.49 Aligned_cols=18 Identities=44% Similarity=0.689 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 31 ~i~G~nGsGKSTLl~~l~ 48 (214)
T cd03292 31 FLVGPSGAGKSTLLKLIY 48 (214)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 117
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.02 E-value=0.036 Score=40.56 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~i~G~nGsGKSTLl~~l~ 47 (213)
T cd03259 30 ALLGPSGCGKTTLLRLIA 47 (213)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 118
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.01 E-value=0.036 Score=39.98 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 22 ~i~G~nGsGKSTLl~~i~ 39 (190)
T TIGR01166 22 ALLGANGAGKSTLLLHLN 39 (190)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999764
No 119
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.99 E-value=0.036 Score=41.28 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 32 ~l~G~nGsGKSTLl~~l~ 49 (243)
T TIGR02315 32 AIIGPSGAGKSTLLRCIN 49 (243)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 120
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.99 E-value=0.037 Score=40.91 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~i~G~nGsGKSTLl~~i~ 47 (227)
T cd03260 30 ALIGPSGCGKSTLLRLLN 47 (227)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999864
No 121
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.98 E-value=0.037 Score=40.47 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~i~G~nGsGKSTLl~~l~ 47 (210)
T cd03269 30 GLLGPNGAGKTTTIRMIL 47 (210)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999763
No 122
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=93.98 E-value=0.07 Score=44.91 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=35.5
Q ss_pred CceeecchhHHHHHHHHhcCCCC--CcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSALNDV--DTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~--~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
..++|......++++.+..-... .+-|+|-.|.||+++|+.+++
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~ 241 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHY 241 (534)
T ss_pred CceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHH
Confidence 47999999999998887543322 348889999999999999875
No 123
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.97 E-value=0.081 Score=49.00 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=33.7
Q ss_pred CceeecchhHHHHHHHHhc---CC-CCCc-ceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSA---LN-DVDT-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~---~~-~~~~-~IvGmGGiGKTTLA~~Vy 104 (106)
..+.||+++.+.|...|.. .. ..++ -|.|..|.|||++++.|.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 4789999999999888743 11 1233 589999999999999874
No 124
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.97 E-value=0.063 Score=46.09 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=33.8
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V 103 (106)
.+++|.+.-++.|.+.+...+..+. =+.|..|+||||+|+.+
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4699999999999888876544433 56899999999999864
No 125
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.089 Score=43.06 Aligned_cols=42 Identities=21% Similarity=0.232 Sum_probs=33.5
Q ss_pred ceeecchhHHHHHHHHhc----CCCCCcceEecCCCcHHHHHHhhh
Q 046733 63 FAYGRDGDRNKIINRLSA----LNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 63 ~vvGrd~~~~~lv~~L~~----~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+.+|+++.+.+...|.. ....++-|.|..|.|||+.++.|.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~ 63 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVM 63 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHH
Confidence 588999999999887743 122245888999999999999875
No 126
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.95 E-value=0.066 Score=45.36 Aligned_cols=42 Identities=19% Similarity=0.426 Sum_probs=31.9
Q ss_pred CceeecchhHHHHHHHHhcC--------C------CCCcceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSAL--------N------DVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~--------~------~~~~~IvGmGGiGKTTLA~~V 103 (106)
..++|.++.++.+...+... . ..++-++|..|+||||||+.+
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~L 70 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRL 70 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHH
Confidence 47999999999987776431 0 112378899999999999965
No 127
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.95 E-value=0.036 Score=43.88 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=16.1
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|-.|.|||||++.+
T Consensus 37 givGeSGsGKSTL~r~l 53 (252)
T COG1124 37 GIVGESGSGKSTLARLL 53 (252)
T ss_pred EEEcCCCCCHHHHHHHH
Confidence 99999999999999975
No 128
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=93.93 E-value=0.072 Score=38.28 Aligned_cols=19 Identities=21% Similarity=0.504 Sum_probs=16.8
Q ss_pred CcceEecCCCcHHHHHHhh
Q 046733 85 DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~V 103 (106)
++.++|.+|+|||||...+
T Consensus 19 kv~lvG~~~vGKTsli~~~ 37 (182)
T PTZ00133 19 RILMVGLDAAGKTTILYKL 37 (182)
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4589999999999999875
No 129
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=93.91 E-value=0.045 Score=37.85 Aligned_cols=41 Identities=20% Similarity=0.320 Sum_probs=27.8
Q ss_pred eecchhHHHHHHHHhcCC--CCCcceEecCCCcHHHHHHhhhc
Q 046733 65 YGRDGDRNKIINRLSALN--DVDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 65 vGrd~~~~~lv~~L~~~~--~~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
||.-...+++.+.+..-. ...+-|.|-.|.||+++|+.+++
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~ 43 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHR 43 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHh
Confidence 455666677776664322 22348889999999999998875
No 130
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=93.90 E-value=0.072 Score=47.61 Aligned_cols=43 Identities=23% Similarity=0.365 Sum_probs=33.7
Q ss_pred CceeecchhHHHHHHHHhcCC-----CCCc-ceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALN-----DVDT-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~-----~~~~-~IvGmGGiGKTTLA~~Vy 104 (106)
.+.+|.++-+++|+++|.... .... -++|..|+||||+|+.+.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia 370 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIA 370 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHH
Confidence 479999999999999885311 1122 788999999999999764
No 131
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=93.88 E-value=0.04 Score=40.76 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 40 ~i~G~nGsGKSTLl~~i~ 57 (228)
T PRK10584 40 ALIGESGSGKSTLLAILA 57 (228)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999875
No 132
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=93.88 E-value=0.067 Score=42.24 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=33.1
Q ss_pred CceeecchhHHHHHHHH---hcC-CCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRL---SAL-NDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L---~~~-~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.+.+++.|++-. ... ...++=++|.-|.|||+|++++.
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall 73 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALL 73 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHH
Confidence 57999999999987643 222 22345889999999999999875
No 133
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=93.88 E-value=0.034 Score=41.16 Aligned_cols=19 Identities=42% Similarity=0.704 Sum_probs=17.5
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
.|+|..|.|||||.+++++
T Consensus 26 ~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 26 AIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 8999999999999999864
No 134
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.85 E-value=0.083 Score=42.11 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=15.5
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|.|..|+||||||+.+
T Consensus 66 GIaG~~GSGKSTlar~L 82 (290)
T TIGR00554 66 SIAGSVAVGKSTTARIL 82 (290)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 89999999999999864
No 135
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.83 E-value=0.041 Score=41.07 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 31 ~i~G~nGsGKSTLl~~l~ 48 (236)
T TIGR03864 31 ALLGPNGAGKSTLFSLLT 48 (236)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999874
No 136
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.82 E-value=0.04 Score=40.44 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 27 ~i~G~nGsGKSTLl~~l~ 44 (214)
T cd03297 27 GIFGASGAGKSTLLRCIA 44 (214)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 137
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.82 E-value=0.041 Score=40.83 Aligned_cols=18 Identities=33% Similarity=0.470 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 35 ~l~G~nGsGKSTLl~~l~ 52 (233)
T cd03258 35 GIIGRSGAGKSTLIRCIN 52 (233)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 138
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.81 E-value=0.041 Score=40.19 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03301 30 VLLGPSGCGKTTTLRMIA 47 (213)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999764
No 139
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.79 E-value=0.042 Score=41.11 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 32 ~i~G~nGsGKSTLl~~l~ 49 (239)
T cd03296 32 ALLGPSGSGKTTLLRLIA 49 (239)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 140
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.79 E-value=0.041 Score=40.30 Aligned_cols=18 Identities=44% Similarity=0.617 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 29 ~l~G~nGsGKSTLl~~l~ 46 (213)
T cd03235 29 AIVGPNGAGKSTLLKAIL 46 (213)
T ss_pred EEECCCCCCHHHHHHHHc
Confidence 999999999999999763
No 141
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.79 E-value=0.042 Score=39.97 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~l~G~nGsGKSTLl~~l~ 47 (195)
T PRK13541 30 YIKGANGCGKSSLLRMIA 47 (195)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999764
No 142
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.79 E-value=0.042 Score=39.49 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=16.3
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|.|..|.||||||+.+.
T Consensus 22 ~i~G~~GsGKstla~~l~ 39 (184)
T TIGR00455 22 WLTGLSGSGKSTIANALE 39 (184)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 888999999999999764
No 143
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.78 E-value=0.041 Score=40.54 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~i~G~nGsGKSTLl~~i~ 47 (220)
T cd03265 30 GLLGPNGAGKTTTIKMLT 47 (220)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 144
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.77 E-value=0.043 Score=40.04 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~i~G~nGsGKSTLl~~l~ 47 (205)
T cd03226 30 ALTGKNGAGKTTLAKILA 47 (205)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999874
No 145
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.75 E-value=0.044 Score=40.27 Aligned_cols=18 Identities=33% Similarity=0.422 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 35 ~i~G~nGsGKSTLl~~i~ 52 (221)
T TIGR02211 35 AIVGSSGSGKSTLLHLLG 52 (221)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999874
No 146
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.74 E-value=0.044 Score=40.84 Aligned_cols=18 Identities=33% Similarity=0.422 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 39 ~l~G~nGsGKSTLl~~l~ 56 (233)
T PRK11629 39 AIVGSSGSGKSTLLHLLG 56 (233)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999874
No 147
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=93.73 E-value=0.05 Score=38.22 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=17.4
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
.|+|..|.||||++.+|.+
T Consensus 23 vi~G~Ng~GKStil~ai~~ 41 (202)
T PF13476_consen 23 VIYGPNGSGKSTILEAIRY 41 (202)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 8899999999999998765
No 148
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.68 E-value=0.043 Score=40.69 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~l~G~nGsGKSTLl~~l~ 47 (236)
T cd03219 30 GLIGPNGAGKTTLFNLIS 47 (236)
T ss_pred EEECCCCCCHHHHHHHHc
Confidence 999999999999999864
No 149
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.68 E-value=0.059 Score=47.21 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=31.1
Q ss_pred CceeecchhHHHHHHHHhcC---C----C------CCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSAL---N----D------VDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~---~----~------~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.++.|.++.++.|.+++... . . ..+-++|..|.||||||+.+.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia 233 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVA 233 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHH
Confidence 35889998888887765321 0 0 112688999999999999875
No 150
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.66 E-value=0.047 Score=37.78 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=15.7
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|.|||||++.+
T Consensus 19 ~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 19 LITGDSGIGKTELALEL 35 (107)
T ss_pred EEEcCCCCCHHHHHHHh
Confidence 89999999999999874
No 151
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.64 E-value=0.045 Score=40.22 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 35 ~i~G~nGsGKSTLl~~l~ 52 (228)
T cd03257 35 GLVGESGSGKSTLARAIL 52 (228)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999764
No 152
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.64 E-value=0.047 Score=39.98 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 31 ~l~G~nGsGKSTLl~~l~ 48 (204)
T PRK13538 31 QIEGPNGAGKTSLLRILA 48 (204)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999874
No 153
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.63 E-value=0.077 Score=45.51 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=31.9
Q ss_pred CceeecchhHHHHHHHHhcC---C----C------CCcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSAL---N----D------VDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~---~----~------~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
.++.|.+..++.|.+.+... . . ..+-++|..|.|||++|+++++
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~ 238 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVAN 238 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHH
Confidence 45778998888887765321 0 0 1236789999999999999864
No 154
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.63 E-value=0.084 Score=45.54 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=33.9
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V 103 (106)
.+++|.+.-+..|..++...+-... -+.|..|.||||+|+.+
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~l 58 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAF 58 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4699999999999988876543332 68899999999999875
No 155
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.62 E-value=0.049 Score=40.47 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=16.2
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|+|||||++.+.
T Consensus 17 vi~GpsG~GK~tl~~~L~ 34 (206)
T PRK14738 17 VISGPSGVGKDAVLARMR 34 (206)
T ss_pred EEECcCCCCHHHHHHHHH
Confidence 689999999999999874
No 156
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.61 E-value=0.046 Score=40.07 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 35 ~i~G~nGsGKSTLl~~l~ 52 (218)
T cd03266 35 GLLGPNGAGKTTTLRMLA 52 (218)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 157
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.60 E-value=0.078 Score=45.64 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=33.3
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V 103 (106)
.+++|.++-++.|.+.+........ -+.|..|+||||+|+.+
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~l 58 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARIL 58 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4699999888888888866543332 57899999999999875
No 158
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=93.60 E-value=0.091 Score=37.67 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=21.4
Q ss_pred HHHHHHHhc-CCCCCcceEecCCCcHHHHHHhh
Q 046733 72 NKIINRLSA-LNDVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 72 ~~lv~~L~~-~~~~~~~IvGmGGiGKTTLA~~V 103 (106)
.++.+++.. ....++.|+|..|+|||||...+
T Consensus 5 ~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l 37 (184)
T smart00178 5 YDILASLGLWNKHAKILFLGLDNAGKTTLLHML 37 (184)
T ss_pred HHHHHHhccccccCEEEEECCCCCCHHHHHHHH
Confidence 344554322 22234599999999999998865
No 159
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=93.59 E-value=0.046 Score=40.62 Aligned_cols=18 Identities=39% Similarity=0.493 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~i~G~nGsGKSTLl~~l~ 47 (243)
T TIGR01978 30 AIMGPNGSGKSTLSKTIA 47 (243)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 160
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.56 E-value=0.05 Score=39.48 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 28 ~i~G~nGsGKSTLl~~l~ 45 (206)
T TIGR03608 28 AIIGESGSGKSTLLNIIG 45 (206)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999764
No 161
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.56 E-value=0.075 Score=46.67 Aligned_cols=43 Identities=19% Similarity=0.068 Sum_probs=33.7
Q ss_pred CceeecchhHHHHHHHHhcCCC----CCc-ceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALND----VDT-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~----~~~-~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.++.+..+|..... .++ -|+|..|.||||+++.+.
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la 131 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILS 131 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHH
Confidence 5799999999998888864321 233 888999999999999764
No 162
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=93.56 E-value=0.072 Score=44.72 Aligned_cols=43 Identities=16% Similarity=0.134 Sum_probs=30.4
Q ss_pred ceeecchhHHHHHHHHhc---CC---------C-CCcceEecCCCcHHHHHHhhhc
Q 046733 63 FAYGRDGDRNKIINRLSA---LN---------D-VDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 63 ~vvGrd~~~~~lv~~L~~---~~---------~-~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
++.|.++.++.|.+.+.. .. . ..+-++|..|.|||+||++|.+
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~ 239 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN 239 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 577888888887766521 10 0 0126789999999999998753
No 163
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.55 E-value=0.048 Score=40.01 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~i~G~nGsGKSTLl~~l~ 47 (222)
T cd03224 30 ALLGRNGAGKTTLLKTIM 47 (222)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999764
No 164
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.53 E-value=0.11 Score=37.08 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=24.6
Q ss_pred hhHHHHHHHHhcCC-CCCc-ceEecCCCcHHHHHHhhh
Q 046733 69 GDRNKIINRLSALN-DVDT-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 69 ~~~~~lv~~L~~~~-~~~~-~IvGmGGiGKTTLA~~Vy 104 (106)
++...+.+.|...- ...+ .+.|.-|.|||||++.+.
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~ 43 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLL 43 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHH
Confidence 44556666554321 2234 888999999999999764
No 165
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.52 E-value=0.05 Score=40.75 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 31 ~i~G~nGsGKSTLl~~l~ 48 (242)
T cd03295 31 VLIGPSGSGKTTTMKMIN 48 (242)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999875
No 166
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=93.50 E-value=0.047 Score=41.34 Aligned_cols=19 Identities=32% Similarity=0.595 Sum_probs=17.7
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
.|+|..|.|||||..++++
T Consensus 29 ~IvG~NGsGKStll~Ai~~ 47 (251)
T cd03273 29 AITGLNGSGKSNILDAICF 47 (251)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 9999999999999999874
No 167
>COG3899 Predicted ATPase [General function prediction only]
Probab=93.50 E-value=0.072 Score=47.94 Aligned_cols=41 Identities=17% Similarity=0.481 Sum_probs=33.1
Q ss_pred eeecchhHHHHHHHHhcCCCC--Cc-ceEecCCCcHHHHHHhhh
Q 046733 64 AYGRDGDRNKIINRLSALNDV--DT-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 64 vvGrd~~~~~lv~~L~~~~~~--~~-~IvGmGGiGKTTLA~~Vy 104 (106)
++||+.+.+.|...+-+-... .+ .++|..|||||+|++.|.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~ 45 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVH 45 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHH
Confidence 689999999998877543322 34 899999999999999874
No 168
>PRK10536 hypothetical protein; Provisional
Probab=93.47 E-value=0.093 Score=41.66 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=30.9
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V 103 (106)
..+.++......++..|.+.. -+.+.|..|.|||+||.++
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~--lV~i~G~aGTGKT~La~a~ 94 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQ--LIFATGEAGCGKTWISAAK 94 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCC--eEEEECCCCCCHHHHHHHH
Confidence 457788888888888776532 2388899999999999864
No 169
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.43 E-value=0.053 Score=41.50 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=15.6
Q ss_pred ceE--ecCCCcHHHHHHhhh
Q 046733 87 VIV--GIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~Iv--GmGGiGKTTLA~~Vy 104 (106)
.|| |..|.||||+|.+++
T Consensus 25 viW~TGLSGsGKSTiA~ale 44 (197)
T COG0529 25 VIWFTGLSGSGKSTIANALE 44 (197)
T ss_pred EEEeecCCCCCHHHHHHHHH
Confidence 455 999999999999875
No 170
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.43 E-value=0.084 Score=42.29 Aligned_cols=42 Identities=19% Similarity=0.371 Sum_probs=31.3
Q ss_pred eeecchhHHHHHHHHhcCCCC--CcceEecCCCcHHHHHHhhhc
Q 046733 64 AYGRDGDRNKIINRLSALNDV--DTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 64 vvGrd~~~~~lv~~L~~~~~~--~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
++|......++.+.+..-... .+-|+|-.|.||+++|+.+++
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 467777777777776543333 348889999999999999875
No 171
>PRK06526 transposase; Provisional
Probab=93.42 E-value=0.053 Score=42.10 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.8
Q ss_pred CcceEecCCCcHHHHHHhh
Q 046733 85 DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~V 103 (106)
++-++|..|.|||+||..+
T Consensus 100 nlll~Gp~GtGKThLa~al 118 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGL 118 (254)
T ss_pred eEEEEeCCCCchHHHHHHH
Confidence 3489999999999999975
No 172
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.41 E-value=0.053 Score=40.53 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 32 ~i~G~nGsGKSTLl~~l~ 49 (242)
T PRK11124 32 VLLGPSGAGKSSLLRVLN 49 (242)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 173
>PLN02200 adenylate kinase family protein
Probab=93.41 E-value=0.051 Score=41.56 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=15.4
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|+|+.|.||||+|+.+
T Consensus 47 ~I~G~PGSGKsT~a~~L 63 (234)
T PLN02200 47 FVLGGPGSGKGTQCEKI 63 (234)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 78899999999999865
No 174
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.39 E-value=0.077 Score=46.07 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=30.8
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++-++.+...+.... .+-++|+.|+||||||+.+-
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la 58 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMA 58 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHH
Confidence 468899887776666554432 34788999999999999753
No 175
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.39 E-value=0.053 Score=40.13 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~l~G~nGsGKSTLl~~l~ 47 (232)
T cd03218 30 GLLGPNGAGKTTTFYMIV 47 (232)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 176
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=93.38 E-value=0.055 Score=40.27 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~i~G~nGsGKSTLl~~l~ 54 (225)
T PRK10247 37 LITGPSGCGKSTLLKIVA 54 (225)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 177
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.38 E-value=0.054 Score=40.29 Aligned_cols=18 Identities=44% Similarity=0.409 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 32 ~i~G~nGsGKSTLl~~l~ 49 (237)
T cd03252 32 GIVGRSGSGKSTLTKLIQ 49 (237)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999764
No 178
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.37 E-value=0.096 Score=45.68 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=33.0
Q ss_pred CceeecchhHHHHHHHHhcCCCC-CcceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDV-DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~-~~~IvGmGGiGKTTLA~~V 103 (106)
.+++|.++-+..|..++...+.. .+-++|..|+||||+|+.+
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~l 58 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARIL 58 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHH
Confidence 46899998888888888654432 2367899999999999875
No 179
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.37 E-value=0.056 Score=39.44 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~i~G~nGsGKSTLl~~l~ 47 (208)
T cd03268 30 GFLGPNGAGKTTTMKIIL 47 (208)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 180
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=93.35 E-value=0.054 Score=40.62 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 33 ~i~G~nGsGKSTLl~~l~ 50 (250)
T PRK11264 33 AIIGPSGSGKTTLLRCIN 50 (250)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999763
No 181
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.34 E-value=0.053 Score=40.78 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 33 ~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14245 33 AFIGPSGCGKSTFLRLFN 50 (250)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999873
No 182
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.34 E-value=0.054 Score=40.72 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 35 ~l~G~nGsGKSTLl~~l~ 52 (255)
T PRK11300 35 SLIGPNGAGKTTVFNCLT 52 (255)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 183
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=93.32 E-value=0.056 Score=39.84 Aligned_cols=18 Identities=33% Similarity=0.658 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 38 ~l~G~nGsGKSTLl~~i~ 55 (224)
T TIGR02324 38 ALSGPSGAGKSTLLKSLY 55 (224)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999875
No 184
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.32 E-value=0.055 Score=41.27 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 31 ~i~G~nGsGKSTLl~~l~ 48 (255)
T PRK11248 31 VVLGPSGCGKTTLLNLIA 48 (255)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 185
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=93.28 E-value=0.055 Score=40.63 Aligned_cols=17 Identities=24% Similarity=0.608 Sum_probs=16.1
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|.|||||.+.+
T Consensus 31 ~i~G~nGsGKSTLl~~l 47 (247)
T TIGR00972 31 ALIGPSGCGKSTLLRSL 47 (247)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 99999999999999976
No 186
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=93.27 E-value=0.056 Score=40.35 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 31 ~l~G~nGsGKSTLl~~l~ 48 (240)
T PRK09493 31 VIIGPSGSGKSTLLRCIN 48 (240)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999763
No 187
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.26 E-value=0.058 Score=39.33 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03262 30 VIIGPSGSGKSTLLRCIN 47 (213)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 188
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=93.24 E-value=0.079 Score=37.67 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=17.4
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
++.|+|..|.|||||...+.
T Consensus 20 ~i~ivG~~~~GKStlin~l~ 39 (179)
T TIGR03598 20 EIAFAGRSNVGKSSLINALT 39 (179)
T ss_pred EEEEEcCCCCCHHHHHHHHh
Confidence 34999999999999998764
No 189
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=93.22 E-value=0.06 Score=39.59 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.++
T Consensus 28 ~i~G~nGsGKSTLl~~l~ 45 (213)
T TIGR01277 28 AIMGPSGAGKSTLLNLIA 45 (213)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999875
No 190
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.21 E-value=0.058 Score=40.52 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 33 ~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14247 33 ALMGPSGSGKSTLLRVFN 50 (250)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 191
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=93.20 E-value=0.06 Score=40.50 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 36 ~i~G~nGsGKSTLl~~l~ 53 (253)
T PRK14242 36 ALIGPSGCGKSTFLRCLN 53 (253)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999874
No 192
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.20 E-value=0.058 Score=40.83 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 35 ~l~G~nGsGKSTLl~~i~ 52 (257)
T PRK10619 35 SIIGSSGSGKSTFLRCIN 52 (257)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 193
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.20 E-value=0.11 Score=43.43 Aligned_cols=43 Identities=12% Similarity=0.321 Sum_probs=29.9
Q ss_pred CceeecchhHHHHHHHHh-------c---CC--C------CCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLS-------A---LN--D------VDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~-------~---~~--~------~~~~IvGmGGiGKTTLA~~Vy 104 (106)
..|+|.++.++.+..-+. . .. . .++-++|..|+|||+||+.+-
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA 137 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLA 137 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHH
Confidence 479999988888754331 1 01 0 123677999999999999763
No 194
>PRK10908 cell division protein FtsE; Provisional
Probab=93.20 E-value=0.061 Score=39.70 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 32 ~i~G~nGsGKSTLl~~l~ 49 (222)
T PRK10908 32 FLTGHSGAGKSTLLKLIC 49 (222)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 195
>PRK09183 transposase/IS protein; Provisional
Probab=93.18 E-value=0.06 Score=41.68 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.9
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||+||..+.
T Consensus 105 v~l~Gp~GtGKThLa~al~ 123 (259)
T PRK09183 105 IVLLGPSGVGKTHLAIALG 123 (259)
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 4899999999999999863
No 196
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.17 E-value=0.1 Score=43.18 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=30.9
Q ss_pred CceeecchhHHHHHHHHh---cC-C---C------CCcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLS---AL-N---D------VDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~---~~-~---~------~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
.++.|.+..++.|.+.+. .. . . ..+-++|..|.|||+||+.+.+
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 368899888888876542 11 1 0 1237889999999999998753
No 197
>PRK05642 DNA replication initiation factor; Validated
Probab=93.12 E-value=0.059 Score=40.88 Aligned_cols=19 Identities=16% Similarity=0.316 Sum_probs=16.9
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
-|+|..|+|||.|++++.+
T Consensus 49 ~l~G~~G~GKTHLl~a~~~ 67 (234)
T PRK05642 49 YLWGKDGVGRSHLLQAACL 67 (234)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 7889999999999998753
No 198
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.12 E-value=0.1 Score=46.51 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=33.1
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V 103 (106)
.+++|.+.-++.|.+.+...+.... =+.|..|+||||+|+.+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHH
Confidence 4699999988888888866543332 57899999999999865
No 199
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=93.10 E-value=0.063 Score=40.65 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 36 ~i~G~nGsGKSTLl~~l~ 53 (258)
T PRK11701 36 GIVGESGSGKTTLLNALS 53 (258)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999875
No 200
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.09 E-value=0.066 Score=38.25 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 31 ~i~G~nGsGKSTLl~~l~ 48 (166)
T cd03223 31 LITGPSGTGKSSLFRALA 48 (166)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 201
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.09 E-value=0.067 Score=39.81 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 33 ~l~G~nGsGKSTLl~~i~ 50 (238)
T cd03249 33 ALVGSSGCGKSTVVSLLE 50 (238)
T ss_pred EEEeCCCCCHHHHHHHHh
Confidence 999999999999999864
No 202
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.08 E-value=0.062 Score=39.77 Aligned_cols=18 Identities=28% Similarity=0.639 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~l~G~nGsGKSTLl~~l~ 47 (230)
T TIGR03410 30 CVLGRNGVGKTTLLKTLM 47 (230)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 203
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.07 E-value=0.064 Score=39.87 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=17.0
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|.|||||.+.+.
T Consensus 16 ~~l~G~NGsGKSTLlk~i~ 34 (213)
T PRK15177 16 IGILAAPGSGKTTLTRLLC 34 (213)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4799999999999999875
No 204
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.06 E-value=0.066 Score=38.38 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 32 ~i~G~nGsGKStLl~~l~ 49 (178)
T cd03247 32 ALLGRSGSGKSTLLQLLT 49 (178)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999764
No 205
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.06 E-value=0.063 Score=40.29 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 51 ~i~G~NGsGKSTLl~~i~ 68 (236)
T cd03267 51 GFIGPNGAGKTTTLKILS 68 (236)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 206
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.05 E-value=0.12 Score=44.84 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=34.8
Q ss_pred CceeecchhHHHHHHHHhcCCCC--CcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSALNDV--DTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~--~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
..++|.......+.+.+..-... .+-|+|-.|.|||++|+.+++
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~ 421 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 421 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHH
Confidence 46999998888888777543222 458889999999999999875
No 207
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.05 E-value=0.066 Score=39.32 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 32 ~i~G~nGsGKSTLl~~l~ 49 (207)
T PRK13539 32 VLTGPNGSGKTTLLRLIA 49 (207)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 208
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.05 E-value=0.065 Score=39.10 Aligned_cols=18 Identities=33% Similarity=0.409 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 31 ~l~G~nGsGKSTLl~~i~ 48 (200)
T PRK13540 31 HLKGSNGAGKTTLLKLIA 48 (200)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999764
No 209
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.05 E-value=0.063 Score=40.28 Aligned_cols=18 Identities=39% Similarity=0.444 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+-
T Consensus 37 ~i~G~nGsGKSTLl~~i~ 54 (252)
T CHL00131 37 AIMGPNGSGKSTLSKVIA 54 (252)
T ss_pred EEECCCCCCHHHHHHHHc
Confidence 999999999999999763
No 210
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.04 E-value=0.063 Score=40.68 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 42 ~l~G~nGsGKSTLl~~l~ 59 (259)
T PRK14274 42 AIIGPSGCGKSTFIKTLN 59 (259)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999864
No 211
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.03 E-value=0.065 Score=39.69 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 32 ~i~G~nGsGKSTLl~~l~ 49 (234)
T cd03251 32 ALVGPSGSGKSTLVNLIP 49 (234)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999764
No 212
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.03 E-value=0.11 Score=40.72 Aligned_cols=33 Identities=18% Similarity=0.383 Sum_probs=21.5
Q ss_pred HHHHHHHHhcCCCC-Cc-ceEecCCCcHHHHHHhh
Q 046733 71 RNKIINRLSALNDV-DT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 71 ~~~lv~~L~~~~~~-~~-~IvGmGGiGKTTLA~~V 103 (106)
...+++.+...... .+ .|+|.+|.|||||+..+
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l 54 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEAL 54 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHH
Confidence 44455544322222 23 88999999999998864
No 213
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=93.02 E-value=0.064 Score=40.05 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=16.0
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|.|||||.+.+
T Consensus 33 ~l~G~nGsGKSTLl~~l 49 (241)
T PRK10895 33 GLLGPNGAGKTTTFYMV 49 (241)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 99999999999999976
No 214
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.01 E-value=0.066 Score=40.21 Aligned_cols=18 Identities=44% Similarity=0.519 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 33 ~i~G~nGsGKSTLl~~l~ 50 (241)
T PRK14250 33 TIVGPSGAGKSTLIKLIN 50 (241)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 215
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.00 E-value=0.067 Score=38.90 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~i~G~nGsGKSTLl~~l~ 47 (198)
T TIGR01189 30 QVTGPNGIGKTTLLRILA 47 (198)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999764
No 216
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=92.98 E-value=0.064 Score=39.83 Aligned_cols=18 Identities=33% Similarity=0.590 Sum_probs=17.0
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||..+++
T Consensus 26 ~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 26 LIVGQNGAGKTTIIEALK 43 (204)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 899999999999999985
No 217
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.98 E-value=0.063 Score=39.51 Aligned_cols=18 Identities=39% Similarity=0.399 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 29 ~l~G~nGsGKSTLl~~l~ 46 (177)
T cd03222 29 GIVGPNGTGKTTAVKILA 46 (177)
T ss_pred EEECCCCChHHHHHHHHH
Confidence 999999999999999764
No 218
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=92.97 E-value=0.067 Score=40.12 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 35 ~i~G~nGsGKSTLl~~l~ 52 (252)
T PRK14239 35 ALIGPSGSGKSTLLRSIN 52 (252)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999874
No 219
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.95 E-value=0.14 Score=45.14 Aligned_cols=43 Identities=16% Similarity=0.299 Sum_probs=32.7
Q ss_pred CceeecchhHHHHHHHHhcCC-----CC---C-cceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALN-----DV---D-TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~-----~~---~-~~IvGmGGiGKTTLA~~Vy 104 (106)
..|+|.++.++.|.+.+.... .. . +-.+|..|+|||+||+.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la 505 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLA 505 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHH
Confidence 579999999999988775321 11 1 1677999999999999864
No 220
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.95 E-value=0.065 Score=40.94 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 29 ~i~G~NGsGKSTLlk~L~ 46 (246)
T cd03237 29 GILGPNGIGKTTFIKMLA 46 (246)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 221
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.95 E-value=0.081 Score=46.68 Aligned_cols=42 Identities=21% Similarity=0.348 Sum_probs=31.4
Q ss_pred Cceeecch---hHHHHHHHHhcCCCC---------CcceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDG---DRNKIINRLSALNDV---------DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~---~~~~lv~~L~~~~~~---------~~~IvGmGGiGKTTLA~~V 103 (106)
++|-|-|+ +.++|++.|.++..- .+-+||..|.|||-||++|
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAv 357 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAV 357 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHh
Confidence 46778874 556678888765421 2377899999999999986
No 222
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=92.94 E-value=0.069 Score=39.77 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=17.1
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.++++
T Consensus 27 ~i~GpNGsGKStll~ai~ 44 (243)
T cd03272 27 VVVGRNGSGKSNFFAAIR 44 (243)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 899999999999999986
No 223
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=92.94 E-value=0.067 Score=40.52 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 34 ~i~G~nGsGKSTLl~~la 51 (258)
T PRK14241 34 AFIGPSGCGKSTVLRTLN 51 (258)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999764
No 224
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=92.93 E-value=0.066 Score=41.01 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~i~G~nGsGKSTLl~~l~ 54 (269)
T PRK11831 37 AIMGPSGIGKTTLLRLIG 54 (269)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 225
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.92 E-value=0.067 Score=40.23 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 34 ~l~G~nGsGKSTLl~~l~ 51 (253)
T PRK14267 34 ALMGPSGCGKSTLLRTFN 51 (253)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 226
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.91 E-value=0.07 Score=38.44 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~i~G~nGsGKSTLl~~l~ 47 (182)
T cd03215 30 GIAGLVGNGQTELAEALF 47 (182)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 227
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.90 E-value=0.068 Score=40.79 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 51 ~i~G~nGsGKSTLl~~l~ 68 (268)
T PRK14248 51 ALIGPSGCGKSTFLRSIN 68 (268)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999863
No 228
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=92.87 E-value=0.071 Score=40.74 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 34 ~I~G~NGsGKSTLl~~i~ 51 (251)
T PRK09544 34 TLLGPNGAGKSTLVRVVL 51 (251)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999875
No 229
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.87 E-value=0.071 Score=44.32 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=17.2
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|||..|.|||||++.+.
T Consensus 364 vaIvG~SGsGKSTLl~lL~ 382 (529)
T TIGR02868 364 VAILGPSGSGKSTLLMLLT 382 (529)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4999999999999999874
No 230
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=92.87 E-value=0.068 Score=40.80 Aligned_cols=18 Identities=28% Similarity=0.387 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 41 ~i~G~nGsGKSTLl~~l~ 58 (265)
T PRK10575 41 GLIGHNGSGKSTLLKMLG 58 (265)
T ss_pred EEECCCCCCHHHHHHHHc
Confidence 999999999999999864
No 231
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.86 E-value=0.075 Score=38.22 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 29 ~l~G~nGsGKStLl~~i~ 46 (180)
T cd03214 29 GILGPNGAGKSTLLKTLA 46 (180)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 232
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.86 E-value=0.13 Score=41.53 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=29.4
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKN 102 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~ 102 (106)
.++||-++.++++--...+.+.-++-|-||+|+||||-+..
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~ 67 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILC 67 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHH
Confidence 47999998887765544443333447889999999996654
No 233
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=92.84 E-value=0.07 Score=40.54 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 43 ~i~G~nGsGKSTLl~~l~ 60 (260)
T PRK10744 43 AFIGPSGCGKSTLLRTFN 60 (260)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999863
No 234
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=92.83 E-value=0.072 Score=40.34 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 33 ~l~G~nGsGKSTLl~~l~ 50 (254)
T PRK10418 33 ALVGGSGSGKSLTCAAAL 50 (254)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 235
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=92.81 E-value=0.071 Score=40.33 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 31 ~i~G~nGsGKSTLl~~i~ 48 (256)
T TIGR03873 31 GLLGPNGSGKSTLLRLLA 48 (256)
T ss_pred EEECCCCCCHHHHHHHHc
Confidence 899999999999999863
No 236
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.81 E-value=0.075 Score=37.99 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 32 ~i~G~nGsGKStLl~~l~ 49 (173)
T cd03246 32 AIIGPSGSGKSTLARLIL 49 (173)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 899999999999999764
No 237
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.80 E-value=0.075 Score=37.99 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~i~G~nGsGKStLl~~l~ 47 (173)
T cd03230 30 GLLGPNGAGKTTLIKIIL 47 (173)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999764
No 238
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=92.80 E-value=0.069 Score=44.13 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=16.3
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 223 vI~G~~gsGKTTL~~~La 240 (399)
T PRK08099 223 AILGGESSGKSTLVNKLA 240 (399)
T ss_pred EEEcCCCCCHHHHHHHHH
Confidence 899999999999999753
No 239
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.79 E-value=0.072 Score=40.12 Aligned_cols=18 Identities=39% Similarity=0.623 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 34 ~i~G~nGsGKSTLl~~l~ 51 (252)
T PRK14256 34 AIIGPSGCGKSTVLRSIN 51 (252)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999863
No 240
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=92.79 E-value=0.071 Score=40.94 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 54 ~I~G~nGsGKSTLl~~i~ 71 (271)
T PRK14238 54 AIIGPSGCGKSTYIKTLN 71 (271)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999864
No 241
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.78 E-value=0.072 Score=39.13 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~i~G~nGsGKSTLl~~l~ 54 (202)
T cd03233 37 LVLGRPGSGCSTLLKALA 54 (202)
T ss_pred EEECCCCCCHHHHHHHhc
Confidence 999999999999999763
No 242
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=92.78 E-value=0.18 Score=37.24 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733 72 NKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 72 ~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy 104 (106)
.+.+..++... .++ .|.|.+|.||||+.+.+.
T Consensus 7 ~~a~~~~l~~~-~~~~~l~G~aGtGKT~~l~~~~ 39 (196)
T PF13604_consen 7 REAVRAILTSG-DRVSVLQGPAGTGKTTLLKALA 39 (196)
T ss_dssp HHHHHHHHHCT-CSEEEEEESTTSTHHHHHHHHH
T ss_pred HHHHHHHHhcC-CeEEEEEECCCCCHHHHHHHHH
Confidence 34444443322 234 677999999999998753
No 243
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.77 E-value=0.073 Score=40.11 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 36 ~i~G~nGsGKSTLl~~l~ 53 (253)
T PRK14261 36 ALIGPSGCGKSTLLRCFN 53 (253)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999874
No 244
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.76 E-value=0.071 Score=42.07 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=15.9
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
+|+|..|+|||||-+.|
T Consensus 33 silGpSGcGKSTLLrii 49 (248)
T COG1116 33 AILGPSGCGKSTLLRLI 49 (248)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 99999999999998875
No 245
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.75 E-value=0.072 Score=40.76 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 31 ~i~G~nGsGKSTLl~~l~ 48 (271)
T PRK13638 31 GLVGANGCGKSTLFMNLS 48 (271)
T ss_pred EEECCCCCCHHHHHHHHc
Confidence 999999999999999864
No 246
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.74 E-value=0.074 Score=40.83 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~l~G~nGsGKSTLl~~i~ 54 (280)
T PRK13649 37 AFIGHTGSGKSTIMQLLN 54 (280)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 247
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=92.74 E-value=0.077 Score=39.04 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.++
T Consensus 31 ~i~G~nGsGKSTLl~~i~ 48 (218)
T cd03290 31 MIVGQVGCGKSSLLLAIL 48 (218)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999875
No 248
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.73 E-value=0.074 Score=39.92 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 33 ~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14262 33 AIIGPSGCGKTTLLRSIN 50 (250)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999874
No 249
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.73 E-value=0.079 Score=37.14 Aligned_cols=18 Identities=39% Similarity=0.446 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~i~G~nGsGKStLl~~l~ 47 (144)
T cd03221 30 GLVGRNGAGKSTLLKLIA 47 (144)
T ss_pred EEECCCCCCHHHHHHHHc
Confidence 899999999999999764
No 250
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=92.73 E-value=0.072 Score=42.40 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 37 ~ivG~sGsGKSTLl~~i~ 54 (330)
T PRK15093 37 GLVGESGSGKSLIAKAIC 54 (330)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999874
No 251
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=92.73 E-value=0.074 Score=39.72 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 31 ~i~G~nGsGKSTLl~~l~ 48 (248)
T PRK09580 31 AIMGPNGSGKSTLSATLA 48 (248)
T ss_pred EEECCCCCCHHHHHHHHc
Confidence 999999999999999864
No 252
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.72 E-value=0.075 Score=39.96 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 35 ~l~G~nGsGKSTLl~~l~ 52 (252)
T PRK14255 35 ALIGPSGCGKSTYLRTLN 52 (252)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999873
No 253
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.72 E-value=0.15 Score=45.54 Aligned_cols=42 Identities=17% Similarity=0.304 Sum_probs=31.6
Q ss_pred CceeecchhHHHHHHHHhcCC----C-C----CcceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALN----D-V----DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~----~-~----~~~IvGmGGiGKTTLA~~V 103 (106)
..|+|.++.++.|.+.+.... . . .+-++|..|+|||+||+.+
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~L 508 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL 508 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHH
Confidence 468999999999988875321 1 1 1256799999999999865
No 254
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=0.11 Score=46.98 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=33.3
Q ss_pred CceeecchhHHHHHHHHhcC----CC-CCc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSAL----ND-VDT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~----~~-~~~-~IvGmGGiGKTTLA~~V 103 (106)
.+-.|.++-+++|++.|.-. .. ..+ ..+|..|+|||.+|+.|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSI 458 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSI 458 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHH
Confidence 47889999999999998422 11 234 78899999999999986
No 255
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=92.71 E-value=0.071 Score=39.50 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+++.
T Consensus 32 ~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 32 LICGPTGAGKSTILDAIT 49 (213)
T ss_pred EEECCCCCCHHHHHHHhe
Confidence 999999999999999864
No 256
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=92.70 E-value=0.075 Score=40.87 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 42 ~I~G~NGsGKSTLlk~l~ 59 (257)
T PRK11247 42 AVVGRSGCGKSTLLRLLA 59 (257)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 257
>CHL00176 ftsH cell division protein; Validated
Probab=92.68 E-value=0.086 Score=46.16 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=29.3
Q ss_pred CceeecchhHHHHHHH---HhcCCC---------CCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINR---LSALND---------VDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~---L~~~~~---------~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.++.|.++.++.+.+. |..... ..+-++|..|.|||+||+.+.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA 237 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIA 237 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHH
Confidence 4688988766666444 332211 023778999999999999874
No 258
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=92.68 E-value=0.078 Score=38.89 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 34 ~i~G~nGsGKSTLl~~i~ 51 (220)
T cd03245 34 AIIGRVGSGKSTLLKLLA 51 (220)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 259
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.67 E-value=0.078 Score=40.70 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 54 ~l~G~nGsGKSTLl~~L~ 71 (269)
T cd03294 54 VIMGLSGSGKSTLLRCIN 71 (269)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 260
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.66 E-value=0.079 Score=40.21 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~l~G~nGsGKSTLlk~l~ 54 (259)
T PRK14260 37 AIIGPSGCGKSTFIKTLN 54 (259)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999874
No 261
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=92.65 E-value=0.078 Score=39.57 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 52 ~i~G~nGsGKSTLl~~l~ 69 (224)
T cd03220 52 GLIGRNGAGKSTLLRLLA 69 (224)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999764
No 262
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=92.65 E-value=0.077 Score=40.11 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 32 ~l~G~nGsGKSTLl~~l~ 49 (255)
T PRK11231 32 ALIGPNGCGKSTLLKCFA 49 (255)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 263
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=92.65 E-value=0.082 Score=39.03 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 44 ~i~G~nGsGKSTLl~~l~ 61 (226)
T cd03248 44 ALVGPSGSGKSTVVALLE 61 (226)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 264
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.64 E-value=0.082 Score=38.48 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 37 ALMGESGAGKTTLLDVLA 54 (192)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 265
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=92.64 E-value=0.073 Score=42.39 Aligned_cols=18 Identities=44% Similarity=0.397 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 37 ~lvG~sGsGKSTL~~~l~ 54 (326)
T PRK11022 37 GIVGESGSGKSVSSLAIM 54 (326)
T ss_pred EEECCCCChHHHHHHHHH
Confidence 999999999999999864
No 266
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=92.63 E-value=0.087 Score=37.57 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=12.3
Q ss_pred ceEecCCCcHHHHHHh
Q 046733 87 VIVGIGGLGKIVVWKN 102 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~ 102 (106)
-|.|..|.||||+...
T Consensus 21 ~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 21 LIQGPPGTGKTTTLAS 36 (236)
T ss_dssp EEE-STTSSHHHHHHH
T ss_pred EEECCCCCChHHHHHH
Confidence 8899999999975543
No 267
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=92.61 E-value=0.081 Score=40.49 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 50 ~I~G~nGsGKSTLl~~l~ 67 (267)
T PRK14237 50 ALIGPSGSGKSTYLRSLN 67 (267)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999875
No 268
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.61 E-value=0.081 Score=38.91 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 25 ~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 25 VVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999998763
No 269
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.61 E-value=0.079 Score=42.21 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=16.2
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|||-.|.|||||++.+
T Consensus 43 glVGESG~GKSTlgr~i 59 (268)
T COG4608 43 GLVGESGCGKSTLGRLI 59 (268)
T ss_pred EEEecCCCCHHHHHHHH
Confidence 99999999999999976
No 270
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.61 E-value=0.083 Score=39.16 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 31 ~l~G~nGsGKSTLl~~i~ 48 (236)
T cd03253 31 AIVGPSGSGKSTILRLLF 48 (236)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 271
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.59 E-value=0.08 Score=40.61 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 43 ~l~G~nGsGKSTLl~~l~ 60 (269)
T PRK14259 43 ALIGPSGCGKSTVLRSLN 60 (269)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999874
No 272
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.59 E-value=0.082 Score=38.82 Aligned_cols=18 Identities=33% Similarity=0.470 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 34 ~i~G~nGsGKSTLl~~l~ 51 (221)
T cd03244 34 GIVGRTGSGKSSLLLALF 51 (221)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999763
No 273
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.57 E-value=0.085 Score=41.69 Aligned_cols=19 Identities=32% Similarity=0.326 Sum_probs=17.2
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
.|+|..|.|||||-+.+..
T Consensus 32 ~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 32 GILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 9999999999999998753
No 274
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=92.57 E-value=0.069 Score=44.89 Aligned_cols=19 Identities=32% Similarity=0.323 Sum_probs=17.8
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
.|||.+|.|||||++.++.
T Consensus 172 ~IvG~~g~GKTtL~~~i~~ 190 (415)
T TIGR00767 172 LIVAPPKAGKTVLLQKIAQ 190 (415)
T ss_pred EEECCCCCChhHHHHHHHH
Confidence 8999999999999999875
No 275
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.56 E-value=0.088 Score=37.55 Aligned_cols=18 Identities=39% Similarity=0.529 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 32 ~l~G~nGsGKstLl~~i~ 49 (171)
T cd03228 32 AIVGPSGSGKSTLLKLLL 49 (171)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999874
No 276
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.56 E-value=0.073 Score=42.21 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=17.8
Q ss_pred CcceEecCCCcHHHHHHhhhc
Q 046733 85 DTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
++-|.|..|.|||||++++..
T Consensus 134 ~ilI~G~tGSGKTTll~al~~ 154 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLA 154 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 348889999999999998753
No 277
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=92.55 E-value=0.16 Score=42.73 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=35.5
Q ss_pred CceeecchhHHHHHHHHhcCCCC--CcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSALNDV--DTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~--~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
..++|.....+++.+.+..-... .+-|.|-.|+||+++|+.++.
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~ 232 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHA 232 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHH
Confidence 46999999998888887653333 347889999999999999875
No 278
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=92.55 E-value=0.081 Score=39.20 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 37 ~l~G~nGsGKSTLlk~l~ 54 (226)
T cd03234 37 AILGSSGSGKTTLLDAIS 54 (226)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 279
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.54 E-value=0.083 Score=40.72 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 50 ~IiG~nGsGKSTLl~~l~ 67 (274)
T PRK14265 50 AFIGPSGCGKSTLLRCFN 67 (274)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999875
No 280
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=92.50 E-value=0.083 Score=39.80 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~i~G~nGsGKSTLl~~l~ 47 (252)
T TIGR03005 30 ALIGPSGSGKSTILRILM 47 (252)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 281
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=92.50 E-value=0.083 Score=39.31 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 29 ~l~G~nGsGKSTLl~~l~ 46 (232)
T PRK10771 29 AILGPSGAGKSTLLNLIA 46 (232)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999763
No 282
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=92.49 E-value=0.084 Score=39.65 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 33 ~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14240 33 ALIGPSGCGKSTFLRTLN 50 (250)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999874
No 283
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.49 E-value=0.082 Score=40.90 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 41 ~l~G~nGsGKSTLl~~l~ 58 (289)
T PRK13645 41 CVIGTTGSGKSTMIQLTN 58 (289)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 284
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=92.49 E-value=0.12 Score=37.02 Aligned_cols=20 Identities=25% Similarity=0.561 Sum_probs=17.1
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
++-|+|+.|.|||||...+.
T Consensus 16 ~ililGl~~sGKTtll~~l~ 35 (175)
T PF00025_consen 16 KILILGLDGSGKTTLLNRLK 35 (175)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCccchHHHHHHhh
Confidence 34889999999999998764
No 285
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=92.49 E-value=0.083 Score=40.36 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 40 ~i~G~nGsGKSTLl~~l~ 57 (264)
T PRK14243 40 AFIGPSGCGKSTILRCFN 57 (264)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999864
No 286
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.46 E-value=0.16 Score=43.83 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=32.9
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V 103 (106)
.+++|.+..++.|...+...+-... -++|..|.||||+|+.+
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~L 56 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIF 56 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHH
Confidence 4699999888888888865543333 57899999999999864
No 287
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.46 E-value=0.17 Score=39.93 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=16.9
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|.|||||++.+.
T Consensus 147 ili~G~tGsGKTTll~al~ 165 (308)
T TIGR02788 147 IIISGGTGSGKTTFLKSLV 165 (308)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999999765
No 288
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=92.46 E-value=0.083 Score=40.52 Aligned_cols=18 Identities=33% Similarity=0.737 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~l~G~nGsGKSTLl~~l~ 54 (272)
T PRK15056 37 ALVGVNGSGKSTLFKALM 54 (272)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 289
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.46 E-value=0.085 Score=39.71 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+-
T Consensus 34 ~i~G~nGsGKSTLl~~l~ 51 (251)
T PRK14270 34 ALIGPSGCGKSTFLRCLN 51 (251)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999763
No 290
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.45 E-value=0.086 Score=38.52 Aligned_cols=18 Identities=39% Similarity=0.466 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 28 ~l~G~nGsGKSTLl~~l~ 45 (211)
T cd03298 28 AIVGPSGSGKSTLLNLIA 45 (211)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999764
No 291
>PLN02796 D-glycerate 3-kinase
Probab=92.45 E-value=0.083 Score=43.40 Aligned_cols=18 Identities=22% Similarity=0.154 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|.|..|.|||||++.+.
T Consensus 104 GI~G~sGSGKSTLa~~L~ 121 (347)
T PLN02796 104 GISAPQGCGKTTLVFALV 121 (347)
T ss_pred EEECCCCCcHHHHHHHHH
Confidence 899999999999999875
No 292
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=92.42 E-value=0.15 Score=40.25 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=15.8
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.++||.|.||||+++.+
T Consensus 137 ~l~G~~GsGKStvg~~L 153 (309)
T PRK08154 137 ALIGLRGAGKSTLGRML 153 (309)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 88899999999999986
No 293
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.42 E-value=0.09 Score=39.46 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 33 ~i~G~nGsGKSTLl~~l~ 50 (250)
T PRK14266 33 ALIGPSGCGKSTFIRTLN 50 (250)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 899999999999999874
No 294
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=92.41 E-value=0.093 Score=36.75 Aligned_cols=20 Identities=25% Similarity=0.564 Sum_probs=17.3
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
++.|+|.+|+|||||...+.
T Consensus 16 kv~ivG~~~~GKTsL~~~l~ 35 (173)
T cd04154 16 RILILGLDNAGKTTILKKLL 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 56899999999999998753
No 295
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=92.39 E-value=0.096 Score=37.05 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=18.1
Q ss_pred CcceEecCCCcHHHHHHhhhc
Q 046733 85 DTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
++.|+|..|.|||||...+..
T Consensus 26 ~v~ivG~~~~GKSsli~~l~~ 46 (196)
T PRK00454 26 EIAFAGRSNVGKSSLINALTN 46 (196)
T ss_pred EEEEEcCCCCCHHHHHHHHhC
Confidence 349999999999999998753
No 296
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=92.39 E-value=0.085 Score=41.19 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 23 ~l~G~NGaGKSTLl~~l~ 40 (302)
T TIGR01188 23 GFLGPNGAGKTTTIRMLT 40 (302)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 297
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=92.38 E-value=0.15 Score=44.29 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=31.3
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
..|||.+.-+..+.-.+.......+-|.|..|.||||+|+.+-
T Consensus 4 ~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~ 46 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLA 46 (633)
T ss_pred chhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHH
Confidence 4689988766666544444433345888999999999999863
No 298
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.38 E-value=0.085 Score=41.28 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=15.3
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.++|..|+||||++..+
T Consensus 198 ~~vGptGvGKTTt~~kL 214 (282)
T TIGR03499 198 ALVGPTGVGKTTTLAKL 214 (282)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 88999999999998765
No 299
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.38 E-value=0.088 Score=39.54 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 34 ~i~G~nGsGKSTLl~~l~ 51 (251)
T PRK14251 34 ALIGPSGCGKSTFLRCLN 51 (251)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 300
>PLN02318 phosphoribulokinase/uridine kinase
Probab=92.37 E-value=0.14 Score=45.34 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|.|..|.||||||+.+.
T Consensus 69 GIaGpSGSGKTTLAk~La 86 (656)
T PLN02318 69 GVAGPSGAGKTVFTEKVL 86 (656)
T ss_pred EEECCCCCcHHHHHHHHH
Confidence 999999999999999874
No 301
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.37 E-value=0.095 Score=37.32 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~l~G~nGsGKSTLl~~i~ 47 (163)
T cd03216 30 ALLGENGAGKSTLMKILS 47 (163)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 302
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.36 E-value=0.092 Score=39.52 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 35 ~I~G~nGsGKSTLl~~i~ 52 (251)
T PRK14244 35 AFIGPSGCGKSTFLRCFN 52 (251)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 899999999999999864
No 303
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.35 E-value=0.093 Score=38.74 Aligned_cols=18 Identities=22% Similarity=0.435 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 41 ~i~G~nGsGKSTLl~~i~ 58 (214)
T PRK13543 41 LVQGDNGAGKTTLLRVLA 58 (214)
T ss_pred EEEcCCCCCHHHHHHHHh
Confidence 899999999999999864
No 304
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=92.34 E-value=0.12 Score=42.73 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=34.0
Q ss_pred CceeecchhHHHHHHHHhcCCC-----CCc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALND-----VDT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~-----~~~-~IvGmGGiGKTTLA~~V 103 (106)
.+++|.++..++|++.+..... .++ -++|.-|.||||||..+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~L 108 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELL 108 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHH
Confidence 4799999999999998864322 134 77899999999999875
No 305
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.32 E-value=0.09 Score=39.63 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~i~G~nGsGKSTLl~~l~ 54 (254)
T PRK14273 37 ALIGPSGCGKSTFLRTLN 54 (254)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 306
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=92.32 E-value=0.14 Score=41.36 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=34.1
Q ss_pred ceeecchhHHHHHHHHhcCCCC-CcceEecCCCcHHHHHHhhhc
Q 046733 63 FAYGRDGDRNKIINRLSALNDV-DTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 63 ~vvGrd~~~~~lv~~L~~~~~~-~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
..||+|.-.+.+-..++..... ++-|||-.|+|||||...+|.
T Consensus 25 gyvGidtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~ 68 (336)
T KOG1547|consen 25 GYVGIDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFK 68 (336)
T ss_pred ccccHHHHHHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHH
Confidence 5789988777777767665544 569999999999999987763
No 307
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=92.31 E-value=0.092 Score=38.54 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=15.5
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|.+|+||||||..+
T Consensus 23 ~i~G~~GsGKT~l~~~~ 39 (218)
T cd01394 23 QVYGPPGTGKTNIAIQL 39 (218)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 88999999999999865
No 308
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=92.31 E-value=0.093 Score=40.15 Aligned_cols=18 Identities=22% Similarity=0.435 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 49 ~i~G~nGsGKSTLl~~l~ 66 (267)
T PRK14235 49 AFIGPSGCGKSTFLRCLN 66 (267)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999874
No 309
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.27 E-value=0.2 Score=39.00 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=24.0
Q ss_pred eecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733 65 YGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 65 vGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V 103 (106)
.|...+....+..+......-+-|.|..|.||||+...+
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~al 100 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSA 100 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHH
Confidence 455444444444443322222388899999999999865
No 310
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.24 E-value=0.094 Score=39.34 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 33 ~i~G~nGsGKSTLl~~l~ 50 (249)
T PRK14253 33 ALIGPSGCGKSTLLRCLN 50 (249)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999863
No 311
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=92.22 E-value=0.094 Score=39.94 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 32 ~i~G~nGsGKSTLl~~i~ 49 (258)
T PRK13548 32 AILGPNGAGKSTLLRALS 49 (258)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999874
No 312
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=92.20 E-value=0.096 Score=39.38 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 33 ~i~G~nGsGKSTLl~~l~ 50 (253)
T TIGR02323 33 GIVGESGSGKSTLLGCLA 50 (253)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999764
No 313
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.20 E-value=0.098 Score=38.19 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 38 ~i~G~nGsGKSTLl~~l~ 55 (207)
T cd03369 38 GIVGRTGAGKSTLILALF 55 (207)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 314
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=92.18 E-value=0.088 Score=45.57 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=16.2
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|||-.|.||||||+.+
T Consensus 321 glVGeSGsGKSTlar~i 337 (539)
T COG1123 321 GLVGESGSGKSTLARIL 337 (539)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 99999999999999976
No 315
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.16 E-value=0.091 Score=42.58 Aligned_cols=19 Identities=37% Similarity=0.307 Sum_probs=17.0
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
-|+|..|+|||.|++++++
T Consensus 140 ~l~G~~G~GKThL~~ai~~ 158 (405)
T TIGR00362 140 FIYGGVGLGKTHLLHAIGN 158 (405)
T ss_pred EEECCCCCcHHHHHHHHHH
Confidence 6889999999999998764
No 316
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.13 E-value=0.099 Score=40.38 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~i~G~nGsGKSTLl~~l~ 54 (279)
T PRK13650 37 SIIGHNGSGKSTTVRLID 54 (279)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999875
No 317
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.12 E-value=0.1 Score=38.53 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=16.0
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|.|||||.+.+
T Consensus 33 ~i~G~nGsGKSTLl~~l 49 (229)
T cd03254 33 AIVGPTGAGKTTLINLL 49 (229)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 99999999999999976
No 318
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.12 E-value=0.099 Score=40.44 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~I~G~nGaGKSTLl~~l~ 54 (282)
T PRK13640 37 ALIGHNGSGKSTISKLIN 54 (282)
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 999999999999999875
No 319
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.09 E-value=0.1 Score=39.17 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 34 ~i~G~nGsGKSTLl~~i~ 51 (252)
T PRK14272 34 ALIGPSGCGKTTFLRAIN 51 (252)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 320
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.08 E-value=0.11 Score=36.32 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 29 ~i~G~nGsGKStll~~l~ 46 (157)
T cd00267 29 ALVGPNGSGKSTLLRAIA 46 (157)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999874
No 321
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=92.06 E-value=0.1 Score=38.89 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 35 ~i~G~nGsGKSTLl~~l~ 52 (237)
T PRK11614 35 TLIGANGAGKTTLLGTLC 52 (237)
T ss_pred EEECCCCCCHHHHHHHHc
Confidence 899999999999999764
No 322
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=92.05 E-value=0.1 Score=38.47 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~i~G~nGsGKSTLl~~l~ 47 (223)
T TIGR03740 30 GLLGPNGAGKSTLLKMIT 47 (223)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999763
No 323
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=92.05 E-value=0.1 Score=38.09 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~i~G~nGsGKSTLl~~l~ 47 (201)
T cd03231 30 QVTGPNGSGKTTLLRILA 47 (201)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999764
No 324
>PF13245 AAA_19: Part of AAA domain
Probab=92.04 E-value=0.12 Score=33.25 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=13.0
Q ss_pred ceEecCCCcHH-HHHHhh
Q 046733 87 VIVGIGGLGKI-VVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKT-TLA~~V 103 (106)
.|.|..|.||| |++..+
T Consensus 14 vv~g~pGtGKT~~~~~~i 31 (76)
T PF13245_consen 14 VVQGPPGTGKTTTLAARI 31 (76)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 56899999999 555443
No 325
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.04 E-value=0.17 Score=37.28 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=25.0
Q ss_pred hhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733 69 GDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 69 ~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy 104 (106)
+..+.|.++|.. .+ .++|..|+|||||...+.
T Consensus 24 ~g~~~l~~~l~~----k~~vl~G~SGvGKSSLiN~L~ 56 (161)
T PF03193_consen 24 EGIEELKELLKG----KTSVLLGQSGVGKSSLINALL 56 (161)
T ss_dssp TTHHHHHHHHTT----SEEEEECSTTSSHHHHHHHHH
T ss_pred cCHHHHHHHhcC----CEEEEECCCCCCHHHHHHHHH
Confidence 557778877754 23 788999999999998764
No 326
>PRK05439 pantothenate kinase; Provisional
Probab=92.02 E-value=0.22 Score=40.14 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=15.6
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|.|..|+||||||+.+
T Consensus 90 gIaG~~gsGKSTla~~L 106 (311)
T PRK05439 90 GIAGSVAVGKSTTARLL 106 (311)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 88899999999999875
No 327
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.02 E-value=0.1 Score=39.95 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 39 ~l~G~nGsGKSTLl~~l~ 56 (271)
T PRK13632 39 AILGHNGSGKSTISKILT 56 (271)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999764
No 328
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=92.00 E-value=0.1 Score=39.96 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 42 ~i~G~nGsGKSTLl~~l~ 59 (268)
T PRK10419 42 ALLGRSGCGKSTLARLLV 59 (268)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999874
No 329
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.96 E-value=0.1 Score=39.84 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 39 ~I~G~nGsGKSTLl~~i~ 56 (269)
T PRK13648 39 SIVGHNGSGKSTIAKLMI 56 (269)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 330
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=91.96 E-value=0.096 Score=41.85 Aligned_cols=18 Identities=33% Similarity=0.276 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 46 ~ivG~sGsGKSTL~~~l~ 63 (330)
T PRK09473 46 GIVGESGSGKSQTAFALM 63 (330)
T ss_pred EEECCCCchHHHHHHHHH
Confidence 999999999999999874
No 331
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=91.95 E-value=0.1 Score=41.79 Aligned_cols=18 Identities=28% Similarity=0.483 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 35 ~iiG~nGsGKSTLlk~L~ 52 (343)
T PRK11153 35 GVIGASGAGKSTLIRCIN 52 (343)
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 999999999999999864
No 332
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=91.95 E-value=0.1 Score=41.19 Aligned_cols=18 Identities=33% Similarity=0.590 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 34 ~iiGPNGaGKSTLlK~iL 51 (254)
T COG1121 34 ALIGPNGAGKSTLLKAIL 51 (254)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 333
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=91.94 E-value=0.1 Score=39.54 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 34 ~i~G~nGsGKSTLl~~i~ 51 (262)
T PRK09984 34 ALLGPSGSGKSTLLRHLS 51 (262)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 334
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.94 E-value=0.11 Score=39.06 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 32 ~i~G~nGsGKSTLl~~l~ 49 (246)
T PRK14269 32 ALIGASGCGKSTFLRCFN 49 (246)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 335
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.91 E-value=0.11 Score=40.30 Aligned_cols=18 Identities=44% Similarity=0.584 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~i~G~nGsGKSTLl~~L~ 54 (286)
T PRK13646 37 AIVGQTGSGKSTLIQNIN 54 (286)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999875
No 336
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.90 E-value=0.18 Score=44.31 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=30.8
Q ss_pred CceeecchhHHHHHHHHhcCCCC-CcceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDV-DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~-~~~IvGmGGiGKTTLA~~V 103 (106)
.+++|.+.-+..|.+.+...+.. .+-+.|..|+||||+|+.+
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiAril 58 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIF 58 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 46899887777777777554322 2256899999999999864
No 337
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=91.89 E-value=0.1 Score=41.60 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 45 ~IvG~sGsGKSTLl~~l~ 62 (327)
T PRK11308 45 AVVGESGCGKSTLARLLT 62 (327)
T ss_pred EEECCCCCcHHHHHHHHH
Confidence 999999999999999874
No 338
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=91.89 E-value=0.11 Score=39.91 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 55 ~I~G~nGsGKSTLl~~la 72 (272)
T PRK14236 55 AFIGPSGCGKSTLLRCFN 72 (272)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999863
No 339
>PRK08116 hypothetical protein; Validated
Probab=91.88 E-value=0.1 Score=40.60 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=17.6
Q ss_pred cceEecCCCcHHHHHHhhhc
Q 046733 86 TVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+-++|..|+|||.||.+|++
T Consensus 117 l~l~G~~GtGKThLa~aia~ 136 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIAN 136 (268)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 37889999999999998864
No 340
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=91.87 E-value=0.11 Score=40.21 Aligned_cols=18 Identities=39% Similarity=0.425 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 54 ~liG~NGsGKSTLlk~L~ 71 (264)
T PRK13546 54 GLVGINGSGKSTLSNIIG 71 (264)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 341
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=91.85 E-value=0.33 Score=36.57 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=26.3
Q ss_pred Cceeecc-hhHHHHHHHHhcCCCC--C-cceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRD-GDRNKIINRLSALNDV--D-TVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd-~~~~~lv~~L~~~~~~--~-~~IvGmGGiGKTTLA~~Vy~ 105 (106)
.-++|.. +..-..+..+...... + +-|+|..|+|||.|.+++++
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~ 56 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN 56 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH
Confidence 3566653 2233344444443332 2 28889999999999999864
No 342
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.84 E-value=0.11 Score=39.40 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 42 ~i~G~nGsGKSTLl~~i~ 59 (258)
T PRK14268 42 ALIGPSGCGKSTFIRCLN 59 (258)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 343
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=91.83 E-value=0.21 Score=43.18 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=16.2
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
-|+|+.|.||||+|+.+.
T Consensus 396 vl~Gl~GSGKSTia~~La 413 (568)
T PRK05537 396 FFTGLSGAGKSTIAKALM 413 (568)
T ss_pred EEECCCCChHHHHHHHHH
Confidence 777999999999999874
No 344
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.81 E-value=0.11 Score=40.04 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 35 ~i~G~nGsGKSTLl~~l~ 52 (274)
T PRK13647 35 ALLGPNGAGKSTLLLHLN 52 (274)
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 999999999999999864
No 345
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=91.81 E-value=0.11 Score=39.65 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~i~G~nGsGKSTLl~~i~ 54 (265)
T PRK10253 37 AIIGPNGCGKSTLLRTLS 54 (265)
T ss_pred EEECCCCCCHHHHHHHHc
Confidence 999999999999999864
No 346
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=91.80 E-value=0.11 Score=39.59 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 41 ~i~G~nGsGKSTLl~~l~ 58 (265)
T TIGR02769 41 GLLGRSGCGKSTLARLLL 58 (265)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999764
No 347
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=91.79 E-value=0.12 Score=37.15 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=16.7
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|.+|+|||||.+.+.
T Consensus 44 I~iiG~~g~GKStLl~~l~ 62 (204)
T cd01878 44 VALVGYTNAGKSTLFNALT 62 (204)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4999999999999998764
No 348
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.75 E-value=0.19 Score=43.76 Aligned_cols=42 Identities=14% Similarity=0.213 Sum_probs=33.3
Q ss_pred CceeecchhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V 103 (106)
.+++|.+..++.|...+....-.. +=+.|.-|+||||+|+.+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~l 59 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIF 59 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHH
Confidence 469999999999998886654433 267899999999999763
No 349
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.71 E-value=0.12 Score=38.52 Aligned_cols=18 Identities=39% Similarity=0.566 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 32 ~l~G~nGsGKSTLl~~l~ 49 (242)
T TIGR03411 32 VIIGPNGAGKTTMMDVIT 49 (242)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999764
No 350
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=91.70 E-value=0.11 Score=46.19 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=16.8
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+.|||-.|.|||||+|.+
T Consensus 502 vaIvG~SGsGKSTL~KLL 519 (709)
T COG2274 502 VAIVGRSGSGKSTLLKLL 519 (709)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 499999999999999986
No 351
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.70 E-value=0.12 Score=39.83 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~IvG~nGsGKSTLlk~l~ 47 (255)
T cd03236 30 GLVGPNGIGKSTALKILA 47 (255)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 352
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.69 E-value=0.12 Score=39.91 Aligned_cols=18 Identities=22% Similarity=0.446 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 51 ~I~G~nGsGKSTLl~~l~ 68 (276)
T PRK14271 51 SLMGPTGSGKTTFLRTLN 68 (276)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 353
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.68 E-value=0.12 Score=39.39 Aligned_cols=18 Identities=22% Similarity=0.435 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 46 ~i~G~nGsGKSTLl~~l~ 63 (265)
T PRK14252 46 ALIGPSGCGKSTFLRCFN 63 (265)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 354
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.66 E-value=0.12 Score=38.87 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=16.1
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|.|||||.+.+
T Consensus 34 ~i~G~nGsGKSTLl~~l 50 (251)
T PRK14249 34 AIIGPSGCGKSTLLRAL 50 (251)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 99999999999999976
No 355
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=91.65 E-value=0.18 Score=45.40 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=32.2
Q ss_pred CceeecchhHHHHHHHHhcCCCC----Cc-----ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDV----DT-----VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~----~~-----~IvGmGGiGKTTLA~~V 103 (106)
..|+|.++.++.+.+-+...+.. +- --+|+.|+|||-||+.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaL 541 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKAL 541 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHH
Confidence 57999999999998887654321 11 33799999999999874
No 356
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=91.63 E-value=0.12 Score=37.55 Aligned_cols=18 Identities=33% Similarity=0.435 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 35 ~i~G~nG~GKSTLl~~i~ 52 (204)
T cd03250 35 AIVGPVGSGKSSLLSALL 52 (204)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999764
No 357
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=91.63 E-value=0.12 Score=39.52 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 43 ~i~G~NGsGKSTLl~~l~ 60 (267)
T PRK15112 43 AIIGENGSGKSTLAKMLA 60 (267)
T ss_pred EEEcCCCCCHHHHHHHHh
Confidence 999999999999999864
No 358
>smart00350 MCM minichromosome maintenance proteins.
Probab=91.63 E-value=0.21 Score=42.22 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=31.8
Q ss_pred CceeecchhHHHHHHHHhcCCC------C------CcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSALND------V------DTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~------~------~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+.++|.+..+..|+-.|..... . ++-|+|-.|.|||+||+.+..
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~ 258 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEK 258 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHH
Confidence 5788988776666666654321 0 237889999999999998754
No 359
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=91.61 E-value=0.12 Score=39.12 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 26 ~l~G~nGsGKSTLl~~l~ 43 (248)
T PRK03695 26 HLVGPNGAGKSTLLARMA 43 (248)
T ss_pred EEECCCCCCHHHHHHHHc
Confidence 999999999999999763
No 360
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=91.61 E-value=0.12 Score=40.05 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 31 ~l~G~nGsGKSTLl~~la 48 (272)
T PRK13547 31 ALLGRNGAGKSTLLKALA 48 (272)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 361
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.58 E-value=0.19 Score=42.77 Aligned_cols=44 Identities=16% Similarity=0.091 Sum_probs=28.9
Q ss_pred CceeecchhHHHHHHHHhcCC------------CCCcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSALN------------DVDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~------------~~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
.+|.|..+.++-|.+-+.-+- +..+-.+|..|.|||-||++|+.
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvAT 267 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVAT 267 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHH
Confidence 356677666665554432211 11236779999999999999975
No 362
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=91.57 E-value=0.13 Score=38.03 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 35 ~I~G~nGsGKStLl~~l~ 52 (220)
T TIGR02982 35 ILTGPSGSGKTTLLTLIG 52 (220)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 363
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.57 E-value=0.12 Score=39.69 Aligned_cols=18 Identities=22% Similarity=0.494 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 32 ~l~G~nGsGKSTLl~~i~ 49 (275)
T PRK13639 32 ALLGPNGAGKSTLFLHFN 49 (275)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999874
No 364
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=91.56 E-value=0.25 Score=40.31 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=32.7
Q ss_pred CceeecchhHHHHHHHHhcCCCC--CcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSALNDV--DTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~--~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
..++|.......+...+...... .+-|.|-.|.||+++|+.++.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~ 183 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHh
Confidence 35888887777777666432222 348889999999999999875
No 365
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=91.56 E-value=0.36 Score=39.35 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=22.8
Q ss_pred hHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733 70 DRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 70 ~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V 103 (106)
....++..|... ..+-|.|..|+||||||+.+
T Consensus 53 ~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~l 84 (327)
T TIGR01650 53 TTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQI 84 (327)
T ss_pred HHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHH
Confidence 344566655432 23588999999999999976
No 366
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=91.56 E-value=0.12 Score=43.47 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=17.1
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|.|||||++.+.
T Consensus 372 ~aIvG~sGsGKSTLl~ll~ 390 (582)
T PRK11176 372 VALVGRSGSGKSTIANLLT 390 (582)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3999999999999999864
No 367
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=91.55 E-value=0.13 Score=37.98 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=16.3
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||+||..+.
T Consensus 23 ~i~G~~GsGKT~l~~~l~ 40 (235)
T cd01123 23 EIFGEFGSGKTQLCHQLA 40 (235)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999998763
No 368
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=91.54 E-value=0.12 Score=43.39 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=17.6
Q ss_pred cceEecCCCcHHHHHHhhhc
Q 046733 86 TVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+.|||..|.|||||++.+.-
T Consensus 358 vaiVG~sGsGKSTl~~LL~r 377 (567)
T COG1132 358 VAIVGPSGSGKSTLIKLLLR 377 (567)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 49999999999999998753
No 369
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.51 E-value=0.12 Score=40.05 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 69 ~l~G~nGsGKSTLl~~L~ 86 (286)
T PRK14275 69 AIIGPSGCGKSTFLRAIN 86 (286)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999874
No 370
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.50 E-value=0.17 Score=45.41 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=33.1
Q ss_pred CceeecchhHHHHHHHHhcCCC-----C---C-cceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALND-----V---D-TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~-----~---~-~~IvGmGGiGKTTLA~~Vy 104 (106)
..++|.+..++.|...+..... . . +-++|..|+|||+||+.+-
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La 616 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALA 616 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 4699999999999888864321 1 1 2678999999999999763
No 371
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=91.50 E-value=0.12 Score=40.29 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 34 ~l~G~NGaGKSTLl~~l~ 51 (303)
T TIGR01288 34 GLLGPNGAGKSTIARMLL 51 (303)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 372
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.48 E-value=0.11 Score=46.64 Aligned_cols=42 Identities=26% Similarity=0.395 Sum_probs=29.9
Q ss_pred CceeecchhHHHHHHH---HhcCCC---C------CcceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINR---LSALND---V------DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~---L~~~~~---~------~~~IvGmGGiGKTTLA~~V 103 (106)
.+|-|.|+.+++|++. |.++.. . .+-++|..|.|||-||+++
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAi 364 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAI 364 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHH
Confidence 3688998777766554 444321 1 1278899999999999987
No 373
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.47 E-value=0.13 Score=39.68 Aligned_cols=18 Identities=22% Similarity=0.612 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 34 ~i~G~NGsGKSTLl~~l~ 51 (277)
T PRK13652 34 AVIGPNGAGKSTLFRHFN 51 (277)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 374
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.46 E-value=0.13 Score=39.11 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~I~G~nGsGKSTLl~~l~ 54 (261)
T PRK14258 37 AIIGPSGCGKSTFLKCLN 54 (261)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 375
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.45 E-value=0.24 Score=44.57 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=32.5
Q ss_pred CceeecchhHHHHHHHHhcCC------CC--C-cceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALN------DV--D-TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~------~~--~-~~IvGmGGiGKTTLA~~Vy 104 (106)
..++|.+..++.|...+.... .. . +-++|..|+|||+||+.+.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa 619 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALA 619 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHH
Confidence 469999999888888775321 11 1 2678999999999999875
No 376
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=91.44 E-value=0.12 Score=41.69 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 35 gIiG~sGaGKSTLlr~I~ 52 (343)
T TIGR02314 35 GVIGASGAGKSTLIRCVN 52 (343)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 377
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=91.43 E-value=0.13 Score=40.29 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 67 ~liG~NGsGKSTLl~~I~ 84 (282)
T cd03291 67 AITGSTGSGKTSLLMLIL 84 (282)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999875
No 378
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.38 E-value=0.13 Score=39.81 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~iiG~NGaGKSTLl~~l~ 54 (287)
T PRK13641 37 ALVGHTGSGKSTLMQHFN 54 (287)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999875
No 379
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=91.38 E-value=0.12 Score=43.17 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=17.0
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
-|+|..|+|||+|++++.+
T Consensus 145 ~L~G~~G~GKTHLl~Ai~~ 163 (445)
T PRK12422 145 YLFGPEGSGKTHLMQAAVH 163 (445)
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 7899999999999998754
No 380
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=91.35 E-value=0.13 Score=41.17 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 51 ~lvG~sGsGKSTLlk~i~ 68 (331)
T PRK15079 51 GVVGESGCGKSTFARAII 68 (331)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999874
No 381
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=91.34 E-value=0.26 Score=42.31 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=34.3
Q ss_pred CceeecchhHHHHHHHHhcCCCC--CcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSALNDV--DTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~--~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+.++|......++++.+..-... .+-|.|-.|.||+++|+.++.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~ 370 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHN 370 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHH
Confidence 46889988888888877543322 347889999999999999874
No 382
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=91.34 E-value=0.13 Score=41.23 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 27 ~l~G~nGsGKSTLl~~ia 44 (354)
T TIGR02142 27 AIFGRSGSGKTTLIRLIA 44 (354)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 383
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.30 E-value=0.13 Score=42.84 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=17.5
Q ss_pred cceEecCCCcHHHHHHhhhc
Q 046733 86 TVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+-|+|..|+|||.|++++.+
T Consensus 133 l~lyG~~G~GKTHLl~ai~~ 152 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHH
Confidence 37889999999999998764
No 384
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.29 E-value=0.14 Score=39.81 Aligned_cols=18 Identities=33% Similarity=0.411 Sum_probs=16.2
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|+|||||-..+.
T Consensus 35 aI~GpSGSGKSTLLniig 52 (226)
T COG1136 35 AIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999987654
No 385
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=91.27 E-value=0.14 Score=40.47 Aligned_cols=18 Identities=28% Similarity=0.494 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 37 ~iiG~nGsGKSTLl~~L~ 54 (305)
T PRK13651 37 AIIGQTGSGKTTFIEHLN 54 (305)
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 999999999999999864
No 386
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=91.27 E-value=0.13 Score=41.28 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 28 ~l~G~nGsGKSTLl~~ia 45 (352)
T PRK11144 28 AIFGRSGAGKTSLINAIS 45 (352)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 387
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=91.25 E-value=0.13 Score=43.07 Aligned_cols=18 Identities=39% Similarity=0.477 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 39 ~iiG~nGsGKSTLl~~i~ 56 (529)
T PRK15134 39 ALVGESGSGKSVTALSIL 56 (529)
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 999999999999998763
No 388
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.24 E-value=0.14 Score=39.61 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 36 ~i~G~nGaGKSTLl~~i~ 53 (283)
T PRK13636 36 AILGGNGAGKSTLFQNLN 53 (283)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999875
No 389
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.18 E-value=0.14 Score=39.77 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 36 ~i~G~nGsGKSTLl~~l~ 53 (288)
T PRK13643 36 ALIGHTGSGKSTLLQHLN 53 (288)
T ss_pred EEECCCCChHHHHHHHHh
Confidence 999999999999999864
No 390
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=91.17 E-value=0.14 Score=38.81 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=17.3
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
.|+|..|.|||||..+|+.
T Consensus 26 ~i~G~NGsGKStll~ai~~ 44 (247)
T cd03275 26 CIIGPNGSGKSNLMDAISF 44 (247)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 8999999999999998763
No 391
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=91.13 E-value=0.18 Score=35.92 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=15.2
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|.+|+||||++..+
T Consensus 36 ~i~g~~g~GKT~~~~~l 52 (193)
T PF13481_consen 36 LIAGPPGSGKTTLALQL 52 (193)
T ss_dssp EEEECSTSSHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHH
Confidence 88899999999998764
No 392
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=91.12 E-value=0.14 Score=40.96 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=16.1
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+.|+|..|.|||||++.+
T Consensus 165 ~~~~G~~~~gkstl~~~l 182 (325)
T TIGR01526 165 VAILGGESTGKSTLVNKL 182 (325)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 388999999999999975
No 393
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.10 E-value=0.15 Score=39.65 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~i~G~nGaGKSTLl~~l~ 54 (287)
T PRK13637 37 GLIGHTGSGKSTLIQHLN 54 (287)
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 999999999999999864
No 394
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.09 E-value=0.15 Score=39.29 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 32 ~i~G~nGsGKSTLl~~l~ 49 (274)
T PRK13644 32 GIIGKNGSGKSTLALHLN 49 (274)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999875
No 395
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.05 E-value=0.15 Score=39.99 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 75 ~IvG~nGsGKSTLl~~L~ 92 (305)
T PRK14264 75 ALIGPSGCGKSTFLRCLN 92 (305)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999874
No 396
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=91.02 E-value=0.15 Score=37.14 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 39 ~l~G~nGsGKStLl~~i~ 56 (194)
T cd03213 39 AIMGPSGAGKSTLLNALA 56 (194)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999763
No 397
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.00 E-value=0.15 Score=40.54 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 56 ~I~G~nGsGKSTLl~~L~ 73 (320)
T PRK13631 56 FIIGNSGSGKSTLVTHFN 73 (320)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999875
No 398
>PLN02348 phosphoribulokinase
Probab=90.99 E-value=0.24 Score=41.44 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|.|..|.||||||+.+.
T Consensus 53 GIaG~SGSGKSTfA~~L~ 70 (395)
T PLN02348 53 GLAADSGCGKSTFMRRLT 70 (395)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 899999999999999764
No 399
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=90.98 E-value=0.19 Score=40.34 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=15.4
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|.|||||...+
T Consensus 108 ~l~G~pGsGKTTLl~~l 124 (290)
T PRK10463 108 NLVSSPGSGKTTLLTET 124 (290)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 89999999999999754
No 400
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=90.98 E-value=0.15 Score=42.20 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 33 ~liG~nGsGKSTLl~~l~ 50 (490)
T PRK10938 33 AFVGANGSGKSALARALA 50 (490)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 401
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=90.97 E-value=0.16 Score=37.20 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=16.3
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~i~G~nGsGKStLl~~l~ 47 (200)
T cd03217 30 ALMGPNGSGKSTLAKTIM 47 (200)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999753
No 402
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=90.95 E-value=0.15 Score=42.59 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~iiG~nGsGKSTLl~~l~ 47 (520)
T TIGR03269 30 GILGRSGAGKSVLMHVLR 47 (520)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 403
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=90.93 E-value=0.21 Score=43.87 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=31.3
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.++.|...+.... .+-++|..|.||||||+.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~~--~~l~~G~~G~GKttla~~l~ 71 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQRR--HVMMIGSPGTGKSMLAKAMA 71 (637)
T ss_pred HHcCChHHHHHHHHHHHHhCC--eEEEECCCCCcHHHHHHHHH
Confidence 468898888887776555432 34888999999999998753
No 404
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=90.93 E-value=0.24 Score=35.09 Aligned_cols=19 Identities=21% Similarity=0.504 Sum_probs=16.5
Q ss_pred CcceEecCCCcHHHHHHhh
Q 046733 85 DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~V 103 (106)
++.++|.+|+|||+|...+
T Consensus 15 ki~l~G~~~~GKTsL~~~~ 33 (175)
T smart00177 15 RILMVGLDAAGKTTILYKL 33 (175)
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 3489999999999998765
No 405
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=90.92 E-value=0.16 Score=37.78 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=15.8
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|.|||||.+.+
T Consensus 29 ~ltGpNg~GKSTllr~i 45 (199)
T cd03283 29 LITGSNMSGKSTFLRTI 45 (199)
T ss_pred EEECCCCCChHHHHHHH
Confidence 89999999999999875
No 406
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=90.92 E-value=0.15 Score=42.26 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 31 ~liG~nGsGKSTLl~~i~ 48 (500)
T TIGR02633 31 GLCGENGAGKSTLMKILS 48 (500)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999874
No 407
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=90.91 E-value=0.15 Score=41.35 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 33 ~l~G~nGsGKSTLL~~ia 50 (369)
T PRK11000 33 VFVGPSGCGKSTLLRMIA 50 (369)
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 999999999999999864
No 408
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=90.91 E-value=0.16 Score=38.07 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~l~G~nGsGKSTLl~~i~ 47 (237)
T TIGR00968 30 ALLGPSGSGKSTLLRIIA 47 (237)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999764
No 409
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=90.89 E-value=0.15 Score=42.40 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 34 ~l~G~NGsGKSTLl~~l~ 51 (501)
T PRK10762 34 ALVGENGAGKSTMMKVLT 51 (501)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 410
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=90.89 E-value=0.16 Score=43.79 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=17.1
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|||..|.|||||++.+.
T Consensus 482 vaIvG~sGsGKSTLlklL~ 500 (686)
T TIGR03797 482 VAIVGPSGSGKSTLLRLLL 500 (686)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4999999999999999864
No 411
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.89 E-value=0.17 Score=37.75 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~i~G~nGsGKSTLl~~l~ 47 (232)
T cd03300 30 TLLGPSGCGKTTLLRLIA 47 (232)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999875
No 412
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.87 E-value=0.25 Score=43.04 Aligned_cols=33 Identities=21% Similarity=0.436 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhh
Q 046733 71 RNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 71 ~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~V 103 (106)
+.+|++.|......++ -|.|++|.|||||+...
T Consensus 19 R~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~ 52 (903)
T PRK04841 19 RERLLAKLSGANNYRLVLVTSPAGYGKTTLISQW 52 (903)
T ss_pred chHHHHHHhcccCCCeEEEECCCCCCHHHHHHHH
Confidence 3466666654333455 88899999999999764
No 413
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.86 E-value=0.32 Score=39.57 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=17.3
Q ss_pred cceEecCCCcHHHHHHhhhc
Q 046733 86 TVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+-|.|..|.|||||++.+..
T Consensus 165 ilI~G~tGSGKTTll~aLl~ 184 (344)
T PRK13851 165 MLLCGPTGSGKTTMSKTLIS 184 (344)
T ss_pred EEEECCCCccHHHHHHHHHc
Confidence 48889999999999998754
No 414
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.85 E-value=0.16 Score=39.52 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 69 ~I~G~nGsGKSTLl~~l~ 86 (285)
T PRK14254 69 AMIGPSGCGKSTFLRCIN 86 (285)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 415
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=90.83 E-value=0.16 Score=40.81 Aligned_cols=17 Identities=29% Similarity=0.720 Sum_probs=15.5
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.++|..|.||||++..+
T Consensus 118 ~lvGpnGsGKTTt~~kL 134 (318)
T PRK10416 118 LVVGVNGVGKTTTIGKL 134 (318)
T ss_pred EEECCCCCcHHHHHHHH
Confidence 88999999999999875
No 416
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=90.81 E-value=0.16 Score=42.60 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 31 ~liG~NGsGKSTLl~~l~ 48 (530)
T PRK15064 31 GLIGANGCGKSTFMKILG 48 (530)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999874
No 417
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=90.76 E-value=0.29 Score=41.47 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=32.9
Q ss_pred ceeecchhHHHHHHHHhcCCC--CCcceEecCCCcHHHHHHhhhc
Q 046733 63 FAYGRDGDRNKIINRLSALND--VDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 63 ~vvGrd~~~~~lv~~L~~~~~--~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
.++|......++++.+..-.. ..+-|+|-.|.||++||+.++.
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred ceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 688888877888777743222 2348889999999999999864
No 418
>CHL00095 clpC Clp protease ATP binding subunit
Probab=90.71 E-value=0.23 Score=44.37 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=31.6
Q ss_pred CceeecchhHHHHHHHHhcCCC-----C-Cc---ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALND-----V-DT---VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~-----~-~~---~IvGmGGiGKTTLA~~V 103 (106)
..|+|.++.++.|.+.+..... . .+ -.+|..|+|||+||+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~L 559 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKAL 559 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHH
Confidence 4799999999999887753221 1 11 57799999999999864
No 419
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=90.70 E-value=0.16 Score=41.96 Aligned_cols=19 Identities=37% Similarity=0.307 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
-|+|..|+|||+|++++.+
T Consensus 152 ~l~G~~G~GKThL~~ai~~ 170 (450)
T PRK00149 152 FIYGGVGLGKTHLLHAIGN 170 (450)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 7789999999999998753
No 420
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=90.69 E-value=0.17 Score=37.31 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=16.0
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.++|.-|.|||||.+.+.
T Consensus 26 ~~~G~~gsGKTTli~~l~ 43 (207)
T TIGR00073 26 NFMSSPGSGKTTLIEKLI 43 (207)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 899999999999988753
No 421
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.68 E-value=0.17 Score=39.13 Aligned_cols=18 Identities=39% Similarity=0.457 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~i~G~nGaGKSTLl~~i~ 54 (279)
T PRK13635 37 AIVGHNGSGKSTLAKLLN 54 (279)
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 999999999999999874
No 422
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=90.68 E-value=0.32 Score=35.02 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=22.4
Q ss_pred HHHHHHHHhcC--CCCCcceEecCCCcHHHHHHhhh
Q 046733 71 RNKIINRLSAL--NDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 71 ~~~lv~~L~~~--~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
+++|++.|... ....+.++|+.|+|||||...+.
T Consensus 113 i~eL~~~l~~~l~~~~~~~~~G~~nvGKStliN~l~ 148 (190)
T cd01855 113 VEELINAIKKLAKKGGDVYVVGATNVGKSTLINALL 148 (190)
T ss_pred HHHHHHHHHHHhhcCCcEEEEcCCCCCHHHHHHHHH
Confidence 45555544331 11234899999999999988764
No 423
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.61 E-value=0.17 Score=38.68 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 38 ~i~G~nGsGKSTLl~~l~ 55 (261)
T PRK14263 38 GFIGPSGCGKSTVLRSLN 55 (261)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999763
No 424
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=90.61 E-value=0.17 Score=42.57 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=17.2
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|||..|.|||||++.+.
T Consensus 379 vaIvG~SGsGKSTL~~lL~ 397 (588)
T PRK11174 379 IALVGPSGAGKTSLLNALL 397 (588)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3999999999999999864
No 425
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.61 E-value=0.18 Score=38.90 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~I~G~nGsGKSTLl~~l~ 54 (277)
T PRK13642 37 SIIGQNGSGKSTTARLID 54 (277)
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 999999999999999864
No 426
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.61 E-value=0.18 Score=37.76 Aligned_cols=18 Identities=44% Similarity=0.604 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 29 ~i~G~nG~GKStLl~~l~ 46 (235)
T cd03299 29 VILGPTGSGKSVLLETIA 46 (235)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999763
No 427
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.60 E-value=0.17 Score=39.30 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~i~G~nGsGKSTLl~~l~ 54 (290)
T PRK13634 37 AIIGHTGSGKSTLLQHLN 54 (290)
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 999999999999999864
No 428
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=90.58 E-value=0.16 Score=42.22 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 292 ~l~G~NGsGKSTLlk~i~ 309 (506)
T PRK13549 292 GIAGLVGAGRTELVQCLF 309 (506)
T ss_pred EEeCCCCCCHHHHHHHHh
Confidence 899999999999999875
No 429
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.57 E-value=0.17 Score=42.18 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=14.8
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.++|.+|+||||++..+
T Consensus 225 ~~vGptGvGKTTt~~kL 241 (424)
T PRK05703 225 ALVGPTGVGKTTTLAKL 241 (424)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 88999999999987654
No 430
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=90.55 E-value=0.17 Score=42.18 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 35 ~l~G~nGsGKSTLl~~l~ 52 (506)
T PRK13549 35 SLCGENGAGKSTLMKVLS 52 (506)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 431
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=90.53 E-value=0.33 Score=39.40 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCCC--CcceEecCCCcHHHHHHhh
Q 046733 71 RNKIINRLSALNDV--DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 71 ~~~lv~~L~~~~~~--~~~IvGmGGiGKTTLA~~V 103 (106)
...|++.+...... .+.|.|..|.|||||...+
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l 76 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEAL 76 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHH
Confidence 34555555332222 2399999999999999864
No 432
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=90.52 E-value=0.18 Score=39.53 Aligned_cols=17 Identities=29% Similarity=0.692 Sum_probs=14.7
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.++|.+|+||||++..+
T Consensus 76 ~l~G~~G~GKTTt~akL 92 (272)
T TIGR00064 76 LFVGVNGVGKTTTIAKL 92 (272)
T ss_pred EEECCCCCcHHHHHHHH
Confidence 78899999999987654
No 433
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=90.50 E-value=0.18 Score=39.35 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=16.9
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.++
T Consensus 34 ~IvG~nGsGKSTLl~~L~ 51 (275)
T cd03289 34 GLLGRTGSGKSTLLSAFL 51 (275)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999875
No 434
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.49 E-value=0.17 Score=42.85 Aligned_cols=17 Identities=24% Similarity=0.563 Sum_probs=15.8
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.++|.+|+||||++.++
T Consensus 245 ~LVGptGvGKTTTiaKL 261 (436)
T PRK11889 245 ALIGPTGVGKTTTLAKM 261 (436)
T ss_pred EEECCCCCcHHHHHHHH
Confidence 89999999999999876
No 435
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=90.49 E-value=0.22 Score=36.55 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=16.2
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+-+.|..|+|||.||.++
T Consensus 50 l~l~G~~G~GKThLa~ai 67 (178)
T PF01695_consen 50 LILYGPPGTGKTHLAVAI 67 (178)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEEhhHhHHHHHHHHHH
Confidence 488899999999999876
No 436
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=90.46 E-value=0.18 Score=42.22 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 41 ~liG~NGsGKSTLl~~l~ 58 (510)
T PRK15439 41 ALLGGNGAGKSTLMKIIA 58 (510)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 437
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=90.43 E-value=0.17 Score=41.92 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=16.9
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.++
T Consensus 278 ~l~G~nGsGKSTLl~~l~ 295 (491)
T PRK10982 278 GIAGLVGAKRTDIVETLF 295 (491)
T ss_pred EEecCCCCCHHHHHHHHc
Confidence 999999999999999875
No 438
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=90.42 E-value=0.17 Score=41.57 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=15.8
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
++.|..|+|||||-+.|
T Consensus 35 ~lLGPSGcGKTTlLR~I 51 (352)
T COG3842 35 TLLGPSGCGKTTLLRMI 51 (352)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 89999999999999876
No 439
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=90.41 E-value=0.18 Score=42.28 Aligned_cols=18 Identities=28% Similarity=0.650 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 349 ~l~G~NGsGKSTLl~~i~ 366 (530)
T PRK15064 349 AIIGENGVGKTTLLRTLV 366 (530)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999875
No 440
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=90.38 E-value=0.17 Score=43.51 Aligned_cols=18 Identities=39% Similarity=0.451 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 46 ~lvG~nGsGKSTLl~~l~ 63 (623)
T PRK10261 46 AIVGESGSGKSVTALALM 63 (623)
T ss_pred EEECCCCChHHHHHHHHH
Confidence 999999999999999874
No 441
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=90.38 E-value=0.19 Score=37.17 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=16.0
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
-|+|.+|.|||+||..+.
T Consensus 27 ~i~G~~GsGKT~l~~~la 44 (225)
T PRK09361 27 QIYGPPGSGKTNICLQLA 44 (225)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 899999999999998753
No 442
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=90.36 E-value=0.17 Score=43.74 Aligned_cols=19 Identities=42% Similarity=0.562 Sum_probs=17.1
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|.|||||++.+.
T Consensus 503 vaIvG~SGsGKSTLlklL~ 521 (708)
T TIGR01193 503 TTIVGMSGSGKSTLAKLLV 521 (708)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4999999999999999863
No 443
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=90.35 E-value=0.19 Score=38.18 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=14.3
Q ss_pred ceEecCCCcHHHHHHh
Q 046733 87 VIVGIGGLGKIVVWKN 102 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~ 102 (106)
-|.|..|.||||||..
T Consensus 28 ~i~G~~G~GKTtl~~~ 43 (230)
T PRK08533 28 LIEGDESTGKSILSQR 43 (230)
T ss_pred EEECCCCCCHHHHHHH
Confidence 8899999999999744
No 444
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=90.32 E-value=0.18 Score=41.98 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 35 ~liG~nGsGKSTLl~~i~ 52 (510)
T PRK09700 35 ALLGENGAGKSTLMKVLS 52 (510)
T ss_pred EEECCCCCCHHHHHHHHc
Confidence 999999999999999864
No 445
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=90.31 E-value=0.18 Score=42.17 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 316 ~i~G~nGsGKSTLlk~l~ 333 (529)
T PRK15134 316 GLVGESGSGKSTTGLALL 333 (529)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999875
No 446
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=90.28 E-value=0.18 Score=41.78 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 28 ~liG~nGsGKSTLl~~l~ 45 (491)
T PRK10982 28 ALMGENGAGKSTLLKCLF 45 (491)
T ss_pred EEECCCCCCHHHHHHHHc
Confidence 999999999999999864
No 447
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=90.27 E-value=0.18 Score=41.93 Aligned_cols=18 Identities=17% Similarity=0.425 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 293 ~l~G~NGsGKSTLlk~i~ 310 (510)
T PRK09700 293 GFAGLVGSGRTELMNCLF 310 (510)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 448
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=90.26 E-value=0.18 Score=41.87 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 34 ~l~G~nGsGKSTLl~~l~ 51 (501)
T PRK11288 34 ALMGENGAGKSTLLKILS 51 (501)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 449
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=90.26 E-value=0.2 Score=38.70 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 40 ~l~G~nGsGKSTLl~~l~ 57 (280)
T PRK13633 40 VILGRNGSGKSTIAKHMN 57 (280)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 450
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=90.21 E-value=0.35 Score=39.01 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=21.3
Q ss_pred HHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 73 KIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 73 ~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++.+.......+-|.|.||.|||+|.+.+.
T Consensus 12 ~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~ 43 (364)
T PF05970_consen 12 TVIEAIENEEGLNFFVTGPAGTGKSFLIKAII 43 (364)
T ss_pred HHHHHHHccCCcEEEEEcCCCCChhHHHHHHH
Confidence 33444433222233888999999999998764
No 451
>PLN02165 adenylate isopentenyltransferase
Probab=90.20 E-value=0.19 Score=41.12 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=15.8
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|+.|+||||||..+
T Consensus 47 vIiGPTGSGKStLA~~L 63 (334)
T PLN02165 47 VIMGATGSGKSRLSVDL 63 (334)
T ss_pred EEECCCCCcHHHHHHHH
Confidence 99999999999999865
No 452
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=90.19 E-value=0.21 Score=37.96 Aligned_cols=18 Identities=28% Similarity=0.325 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 51 ~i~G~nGsGKSTLl~~l~ 68 (257)
T cd03288 51 GICGRTGSGKSSLSLAFF 68 (257)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 899999999999999864
No 453
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=90.17 E-value=0.19 Score=40.64 Aligned_cols=18 Identities=28% Similarity=0.494 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 36 ~llGpsGsGKSTLLr~Ia 53 (351)
T PRK11432 36 TLLGPSGCGKTTVLRLVA 53 (351)
T ss_pred EEECCCCCcHHHHHHHHH
Confidence 999999999999999864
No 454
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.14 E-value=0.23 Score=31.28 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=16.0
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|.|..|.|||||.-++.
T Consensus 27 li~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 27 LITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 889999999999988764
No 455
>PHA02244 ATPase-like protein
Probab=90.13 E-value=0.36 Score=40.31 Aligned_cols=21 Identities=24% Similarity=0.185 Sum_probs=17.7
Q ss_pred CcceEecCCCcHHHHHHhhhc
Q 046733 85 DTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
.+-|+|..|+|||+||+.+.+
T Consensus 121 PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 347889999999999998753
No 456
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=90.10 E-value=0.36 Score=41.36 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=34.2
Q ss_pred ceeecchhHHHHHHHHhcCCC--CCcceEecCCCcHHHHHHhhhc
Q 046733 63 FAYGRDGDRNKIINRLSALND--VDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 63 ~vvGrd~~~~~lv~~L~~~~~--~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+++|.......+.+.+..-.. ..+-|.|-.|.||+.+|+.+|+
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~ 257 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQ 257 (526)
T ss_pred heeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHH
Confidence 599999888888887754322 2458889999999999999985
No 457
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=90.09 E-value=0.19 Score=41.73 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 282 ~liG~NGsGKSTLl~~l~ 299 (501)
T PRK10762 282 GVSGLMGAGRTELMKVLY 299 (501)
T ss_pred EEecCCCCCHHHHHHHHh
Confidence 899999999999999875
No 458
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=90.07 E-value=0.19 Score=42.04 Aligned_cols=18 Identities=22% Similarity=0.532 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 293 ~l~G~NGsGKSTLl~~i~ 310 (510)
T PRK15439 293 GLAGVVGAGRTELAETLY 310 (510)
T ss_pred EEECCCCCCHHHHHHHHc
Confidence 999999999999999874
No 459
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=90.06 E-value=0.22 Score=37.10 Aligned_cols=19 Identities=47% Similarity=0.574 Sum_probs=16.6
Q ss_pred CcceEecCCCcHHHHHHhh
Q 046733 85 DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~V 103 (106)
++.|+|..|+|||||....
T Consensus 15 Ki~vvG~~gvGKTsli~~~ 33 (219)
T PLN03071 15 KLVIVGDGGTGKTTFVKRH 33 (219)
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4589999999999999864
No 460
>PRK07952 DNA replication protein DnaC; Validated
Probab=90.01 E-value=0.2 Score=38.84 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=16.2
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
-++|-+|.|||+||.++.
T Consensus 103 ~l~G~~GtGKThLa~aia 120 (244)
T PRK07952 103 IFSGKPGTGKNHLAAAIC 120 (244)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 788999999999999864
No 461
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=90.01 E-value=0.18 Score=37.81 Aligned_cols=14 Identities=43% Similarity=0.648 Sum_probs=13.5
Q ss_pred ceEecCCCcHHHHH
Q 046733 87 VIVGIGGLGKIVVW 100 (106)
Q Consensus 87 ~IvGmGGiGKTTLA 100 (106)
.|+|..|.|||||+
T Consensus 25 ~l~G~sGsGKSTL~ 38 (226)
T cd03270 25 VITGVSGSGKSSLA 38 (226)
T ss_pred EEEcCCCCCHHHHH
Confidence 99999999999996
No 462
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.98 E-value=0.43 Score=43.08 Aligned_cols=42 Identities=21% Similarity=0.326 Sum_probs=32.0
Q ss_pred CceeecchhHHHHHHHHhcCC------CC--Cc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALN------DV--DT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~------~~--~~-~IvGmGGiGKTTLA~~V 103 (106)
..|+|.++.++.|.+.+.... .. .+ -.+|..|+|||.||+.+
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~L 616 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALAL 616 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHH
Confidence 479999999999988875421 11 12 66799999999999864
No 463
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=89.98 E-value=0.2 Score=43.13 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 354 ~lvG~nGsGKSTLlk~i~ 371 (623)
T PRK10261 354 SLVGESGSGKSTTGRALL 371 (623)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999874
No 464
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=89.98 E-value=0.2 Score=42.39 Aligned_cols=18 Identities=39% Similarity=0.558 Sum_probs=16.9
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 354 ~l~G~NGsGKSTLl~~i~ 371 (556)
T PRK11819 354 GIIGPNGAGKSTLFKMIT 371 (556)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999875
No 465
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=89.97 E-value=0.19 Score=43.38 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=17.1
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|||..|.|||||++.+.
T Consensus 508 vaIvG~sGsGKSTLlklL~ 526 (710)
T TIGR03796 508 VALVGGSGSGKSTIAKLVA 526 (710)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4999999999999999863
No 466
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=89.97 E-value=0.21 Score=39.73 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=16.0
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|.|||||.+.+
T Consensus 61 ~I~G~NGsGKTTLL~ll 77 (257)
T COG1119 61 AIVGPNGAGKTTLLSLL 77 (257)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 99999999999999875
No 467
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=89.96 E-value=0.37 Score=41.53 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=34.7
Q ss_pred CceeecchhHHHHHHHHhcCCC--CCcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSALND--VDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~--~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
.+++|.....+.+.+.+..-.. ..+-|.|-.|.||+++|+.+++
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~ 264 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHR 264 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3599999888888887754322 2458889999999999999975
No 468
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=89.95 E-value=0.25 Score=34.55 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=16.0
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.++|+.|+||+||-..+.
T Consensus 106 ~~~G~~nvGKStliN~l~ 123 (157)
T cd01858 106 GFIGYPNVGKSSIINTLR 123 (157)
T ss_pred EEEeCCCCChHHHHHHHh
Confidence 789999999999988764
No 469
>PRK12377 putative replication protein; Provisional
Probab=89.95 E-value=0.21 Score=38.89 Aligned_cols=19 Identities=32% Similarity=0.211 Sum_probs=16.8
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+-++|..|+|||.||.++.
T Consensus 104 l~l~G~~GtGKThLa~AIa 122 (248)
T PRK12377 104 FVFSGKPGTGKNHLAAAIG 122 (248)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3788999999999999875
No 470
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.93 E-value=0.2 Score=42.31 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=15.4
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.++|.+|+||||++..+
T Consensus 227 ~lvGptGvGKTTtaaKL 243 (432)
T PRK12724 227 FFVGPTGSGKTTSIAKL 243 (432)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 78899999999999875
No 471
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=89.93 E-value=0.21 Score=37.37 Aligned_cols=18 Identities=39% Similarity=0.514 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||-+++.
T Consensus 29 ~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 29 AIVGPNGSGKSNVIDSML 46 (212)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999998764
No 472
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=89.91 E-value=0.21 Score=41.67 Aligned_cols=18 Identities=44% Similarity=0.479 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 314 ~l~G~NGsGKSTLl~~l~ 331 (520)
T TIGR03269 314 GIVGTSGAGKTTLSKIIA 331 (520)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999874
No 473
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=89.90 E-value=0.22 Score=41.84 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=17.1
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|.|||||++.+.
T Consensus 352 ~aivG~sGsGKSTL~~ll~ 370 (547)
T PRK10522 352 LFLIGGNGSGKSTLAMLLT 370 (547)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3999999999999999864
No 474
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.90 E-value=0.21 Score=39.90 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=17.0
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.++
T Consensus 112 ~IvG~~GsGKSTLl~~L~ 129 (329)
T PRK14257 112 AFIGPSGCGKSTFLRNLN 129 (329)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999876
No 475
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=89.89 E-value=0.2 Score=41.36 Aligned_cols=18 Identities=39% Similarity=0.446 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 290 ~i~G~NGsGKSTLl~~l~ 307 (490)
T PRK10938 290 QIVGPNGAGKSTLLSLIT 307 (490)
T ss_pred EEECCCCCCHHHHHHHHc
Confidence 899999999999999874
No 476
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=89.89 E-value=0.22 Score=38.71 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=17.6
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
-|+|..|.|||||-+++|-
T Consensus 32 fl~GpSGAGKSTllkLi~~ 50 (223)
T COG2884 32 FLTGPSGAGKSTLLKLIYG 50 (223)
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 8999999999999999883
No 477
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.89 E-value=0.21 Score=38.09 Aligned_cols=17 Identities=35% Similarity=0.474 Sum_probs=16.0
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|.|||||.+.+
T Consensus 40 ~i~G~nGsGKSTLl~~i 56 (257)
T PRK14246 40 GIMGPSGSGKSTLLKVL 56 (257)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 99999999999999976
No 478
>PLN03118 Rab family protein; Provisional
Probab=89.89 E-value=0.22 Score=36.30 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=16.5
Q ss_pred CcceEecCCCcHHHHHHhh
Q 046733 85 DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~V 103 (106)
++.|+|-.|+|||||...+
T Consensus 16 kv~ivG~~~vGKTsli~~l 34 (211)
T PLN03118 16 KILLIGDSGVGKSSLLVSF 34 (211)
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4589999999999999765
No 479
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=89.77 E-value=0.23 Score=41.62 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=17.1
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|.|||||++.+.
T Consensus 347 ~~ivG~sGsGKSTL~~ll~ 365 (544)
T TIGR01842 347 LAIIGPSGSGKSTLARLIV 365 (544)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3999999999999999864
No 480
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=89.76 E-value=0.22 Score=40.29 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 32 ~llGpsGsGKSTLLr~Ia 49 (353)
T PRK10851 32 ALLGPSGSGKTTLLRIIA 49 (353)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 481
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=89.72 E-value=0.22 Score=36.51 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=16.6
Q ss_pred Cc-ceEecCCCcHHHHHHhh
Q 046733 85 DT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~-~IvGmGGiGKTTLA~~V 103 (106)
.+ .|+|..|.|||+||..+
T Consensus 20 ~v~~I~G~~GsGKT~l~~~i 39 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQL 39 (226)
T ss_pred cEEEEeCCCCCChhHHHHHH
Confidence 45 99999999999999865
No 482
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=89.66 E-value=0.57 Score=35.67 Aligned_cols=41 Identities=10% Similarity=0.033 Sum_probs=30.6
Q ss_pred ceeecchhHHHHHHHHhcCC-CCC-cceEecCCCcHHHHHHhh
Q 046733 63 FAYGRDGDRNKIINRLSALN-DVD-TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 63 ~vvGrd~~~~~lv~~L~~~~-~~~-~~IvGmGGiGKTTLA~~V 103 (106)
+++|.+.....+..+..... -.. +=+.|..|+||||+|..+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~l 44 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALAL 44 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHH
Confidence 46777888888888887433 223 367799999999999753
No 483
>PRK03003 GTP-binding protein Der; Reviewed
Probab=89.63 E-value=0.38 Score=40.06 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 41 V~IvG~~nvGKSSL~nrl~ 59 (472)
T PRK03003 41 VAVVGRPNVGKSTLVNRIL 59 (472)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 4999999999999998653
No 484
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.59 E-value=0.22 Score=41.12 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=15.5
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.++|..|+||||++.++
T Consensus 141 ~lvGptGvGKTTtiakL 157 (374)
T PRK14722 141 ALMGPTGVGKTTTTAKL 157 (374)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 88999999999998875
No 485
>PLN02674 adenylate kinase
Probab=89.58 E-value=0.23 Score=38.67 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=16.1
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+-|.|+.|.||+|+|+.+
T Consensus 34 i~l~G~PGsGKgT~a~~L 51 (244)
T PLN02674 34 LILIGPPGSGKGTQSPII 51 (244)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 478899999999999975
No 486
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=89.58 E-value=0.23 Score=40.23 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+-
T Consensus 34 ~llG~sGsGKSTLLr~ia 51 (356)
T PRK11650 34 VLVGPSGCGKSTLLRMVA 51 (356)
T ss_pred EEECCCCCcHHHHHHHHH
Confidence 899999999999999763
No 487
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=89.57 E-value=0.22 Score=42.07 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 352 ~l~G~NGsGKSTLl~~l~ 369 (552)
T TIGR03719 352 GVIGPNGAGKSTLFRMIT 369 (552)
T ss_pred EEECCCCCCHHHHHHHHc
Confidence 999999999999999874
No 488
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=89.56 E-value=0.26 Score=37.58 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=21.1
Q ss_pred eecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHh
Q 046733 65 YGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKN 102 (106)
Q Consensus 65 vGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~ 102 (106)
..+.......++.|.. .++ .+.|..|.|||.||-.
T Consensus 3 ~p~~~~Q~~~~~al~~---~~~v~~~G~AGTGKT~LA~a 38 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN---NDLVIVNGPAGTGKTFLALA 38 (205)
T ss_dssp ---SHHHHHHHHHHHH----SEEEEE--TTSSTTHHHHH
T ss_pred cCCCHHHHHHHHHHHh---CCeEEEECCCCCcHHHHHHH
Confidence 3455556666777762 233 7889999999999864
No 489
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.55 E-value=0.23 Score=39.33 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=16.0
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|.|+.|.||+|||..+
T Consensus 34 aiMGPNGsGKSTLa~~i 50 (251)
T COG0396 34 AIMGPNGSGKSTLAYTI 50 (251)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 99999999999999875
No 490
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.54 E-value=0.2 Score=45.37 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=15.0
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-++|..|+||||||..|
T Consensus 330 LL~GppGlGKTTLAHVi 346 (877)
T KOG1969|consen 330 LLCGPPGLGKTTLAHVI 346 (877)
T ss_pred EeecCCCCChhHHHHHH
Confidence 67799999999999865
No 491
>PLN00223 ADP-ribosylation factor; Provisional
Probab=89.53 E-value=0.25 Score=35.50 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=17.2
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
++.|+|..|+|||||...+.
T Consensus 19 ki~ivG~~~~GKTsl~~~l~ 38 (181)
T PLN00223 19 RILMVGLDAAGKTTILYKLK 38 (181)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 45999999999999998764
No 492
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=89.52 E-value=0.24 Score=38.77 Aligned_cols=18 Identities=33% Similarity=0.350 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 32 ~l~G~NGaGKTTLl~~l~ 49 (301)
T TIGR03522 32 GFLGPNGAGKSTTMKIIT 49 (301)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999764
No 493
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=89.52 E-value=0.25 Score=41.13 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=17.1
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|.|||||++.+.
T Consensus 351 ~~ivG~sGsGKSTL~~ll~ 369 (529)
T TIGR02857 351 VALVGPSGAGKSTLLNLLL 369 (529)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3999999999999999864
No 494
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=89.49 E-value=0.6 Score=39.22 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=27.5
Q ss_pred CceeecchhHHHH---HHHHhcCCCC-Cc-ceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKI---INRLSALNDV-DT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~l---v~~L~~~~~~-~~-~IvGmGGiGKTTLA~~V 103 (106)
..+||..+.++.. ++++....-. +. -++|..|.|||+||-.+
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~i 70 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAI 70 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHH
T ss_pred ccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHH
Confidence 4799998777653 5555544322 33 88899999999999865
No 495
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=89.47 E-value=0.3 Score=42.44 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 71 RNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 71 ~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
-++|.+.|.... ..+-|-|..|.||||.||++-
T Consensus 252 ~dkl~eRL~era-eGILIAG~PGaGKsTFaqAlA 284 (604)
T COG1855 252 SDKLKERLEERA-EGILIAGAPGAGKSTFAQALA 284 (604)
T ss_pred CHHHHHHHHhhh-cceEEecCCCCChhHHHHHHH
Confidence 356777765432 234677999999999999874
No 496
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=89.45 E-value=0.25 Score=38.89 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=16.9
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
+++|..|.|||||.+.++
T Consensus 33 ~llG~NGaGKTTlLkti~ 50 (237)
T COG0410 33 ALLGRNGAGKTTLLKTIM 50 (237)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999875
No 497
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=89.40 E-value=0.23 Score=41.09 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 58 ~LvG~NGsGKSTLLr~I~ 75 (400)
T PRK10070 58 VIMGLSGSGKSTMVRLLN 75 (400)
T ss_pred EEECCCCchHHHHHHHHH
Confidence 899999999999999874
No 498
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=89.38 E-value=0.23 Score=43.00 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=17.0
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|.|||||.+.+.
T Consensus 30 v~LvG~NGsGKSTLLkiL~ 48 (638)
T PRK10636 30 VGLVGKNGCGKSTLLALLK 48 (638)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3999999999999999864
No 499
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=89.37 E-value=0.24 Score=41.93 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~iiG~NGsGKSTLlk~i~ 54 (556)
T PRK11819 37 GVLGLNGAGKSTLLRIMA 54 (556)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999874
No 500
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=89.34 E-value=0.24 Score=43.23 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=17.1
Q ss_pred CcceEecCCCcHHHHHHhh
Q 046733 85 DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~V 103 (106)
++.+||..|+|||||.+++
T Consensus 108 RYGLvGrNG~GKsTLLRai 126 (582)
T KOG0062|consen 108 RYGLVGRNGIGKSTLLRAI 126 (582)
T ss_pred ccceeCCCCCcHHHHHHHH
Confidence 4599999999999999976
Done!