Query 046733
Match_columns 106
No_of_seqs 174 out of 1110
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 06:22:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 98.9 7.5E-10 2.6E-14 90.6 4.0 43 63-105 129-174 (549)
2 3sfz_A APAF-1, apoptotic pepti 98.7 5.9E-09 2E-13 89.0 4.4 44 62-105 124-169 (1249)
3 1z6t_A APAF-1, apoptotic prote 98.6 2.9E-08 9.8E-13 80.4 4.4 44 62-105 124-169 (591)
4 1vt4_I APAF-1 related killer D 98.4 8.2E-08 2.8E-12 86.7 3.6 43 63-105 129-172 (1221)
5 1jbk_A CLPB protein; beta barr 98.1 1.7E-06 5.9E-11 58.3 4.0 43 62-104 22-64 (195)
6 2p65_A Hypothetical protein PF 98.0 3.4E-06 1.2E-10 57.1 3.2 43 62-104 22-64 (187)
7 1njg_A DNA polymerase III subu 97.9 8.1E-06 2.8E-10 56.5 4.2 43 62-104 23-66 (250)
8 2chg_A Replication factor C sm 97.9 1.2E-05 4.3E-10 55.2 4.4 43 62-104 17-59 (226)
9 2qby_A CDC6 homolog 1, cell di 97.8 1E-05 3.4E-10 60.8 3.4 43 62-104 20-66 (386)
10 2qen_A Walker-type ATPase; unk 97.8 1.6E-05 5.5E-10 59.0 4.2 40 62-104 12-52 (350)
11 1w5s_A Origin recognition comp 97.7 1.5E-05 5.1E-10 60.9 3.0 43 62-104 22-73 (412)
12 2fna_A Conserved hypothetical 97.7 2.7E-05 9.4E-10 57.7 3.8 39 62-104 13-51 (357)
13 2qby_B CDC6 homolog 3, cell di 97.7 3.3E-05 1.1E-09 58.6 4.3 44 62-105 20-67 (384)
14 2v1u_A Cell division control p 97.6 3.9E-05 1.3E-09 57.7 3.2 43 62-104 19-65 (387)
15 1sxj_B Activator 1 37 kDa subu 97.5 8.8E-05 3E-09 54.7 4.5 43 62-104 21-63 (323)
16 1fnn_A CDC6P, cell division co 97.5 6.9E-05 2.4E-09 56.6 3.7 43 62-104 17-65 (389)
17 3pxg_A Negative regulator of g 97.5 7.1E-05 2.4E-09 60.4 3.6 43 62-104 180-222 (468)
18 1iqp_A RFCS; clamp loader, ext 97.5 9E-05 3.1E-09 54.7 3.9 43 62-104 25-67 (327)
19 3n70_A Transport activator; si 97.4 0.00012 4.2E-09 49.6 3.5 43 63-105 2-46 (145)
20 3h4m_A Proteasome-activating n 97.3 0.00014 4.7E-09 53.4 3.3 43 62-104 17-72 (285)
21 1sxj_D Activator 1 41 kDa subu 97.3 0.00022 7.7E-09 53.3 4.3 43 62-104 37-79 (353)
22 3co5_A Putative two-component 97.2 0.0003 1E-08 47.7 4.2 44 62-105 4-49 (143)
23 1jr3_A DNA polymerase III subu 97.2 0.00028 9.7E-09 53.2 4.3 43 62-104 16-59 (373)
24 1qvr_A CLPB protein; coiled co 97.2 0.00029 9.9E-09 60.6 4.7 43 62-104 170-212 (854)
25 3pxi_A Negative regulator of g 97.2 0.00022 7.7E-09 60.2 3.7 43 62-104 180-222 (758)
26 1hqc_A RUVB; extended AAA-ATPa 97.2 0.00029 1E-08 52.3 3.8 44 62-105 12-60 (324)
27 2chq_A Replication factor C sm 97.1 0.0003 1E-08 51.7 3.6 43 62-104 17-59 (319)
28 3syl_A Protein CBBX; photosynt 97.1 0.0004 1.4E-08 51.4 3.9 42 63-104 32-88 (309)
29 1ofh_A ATP-dependent HSL prote 97.1 0.0005 1.7E-08 50.4 4.4 43 62-104 15-71 (310)
30 1r6b_X CLPA protein; AAA+, N-t 97.1 0.00036 1.2E-08 58.7 4.0 43 62-104 186-228 (758)
31 3b9p_A CG5977-PA, isoform A; A 97.0 0.00069 2.4E-08 50.0 4.5 43 62-104 21-75 (297)
32 3pfi_A Holliday junction ATP-d 97.0 0.00064 2.2E-08 51.1 4.3 43 62-104 29-76 (338)
33 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.00059 2E-08 49.1 3.9 43 62-104 6-60 (262)
34 1sxj_E Activator 1 40 kDa subu 96.9 0.00055 1.9E-08 51.6 3.4 43 62-104 14-57 (354)
35 2r62_A Cell division protease 96.9 0.0013 4.3E-08 47.9 4.8 43 62-104 11-65 (268)
36 2bjv_A PSP operon transcriptio 96.8 0.00081 2.8E-08 49.1 3.6 44 62-105 6-51 (265)
37 3uk6_A RUVB-like 2; hexameric 96.8 0.0012 4.1E-08 49.9 4.6 43 62-104 44-91 (368)
38 1lv7_A FTSH; alpha/beta domain 96.8 0.00079 2.7E-08 49.0 3.4 43 62-104 12-66 (257)
39 3cf0_A Transitional endoplasmi 96.8 0.00085 2.9E-08 50.6 3.7 43 62-104 15-70 (301)
40 1sxj_A Activator 1 95 kDa subu 96.8 0.0009 3.1E-08 54.4 3.9 43 62-104 39-98 (516)
41 3bos_A Putative DNA replicatio 96.8 0.0012 4.1E-08 46.2 4.1 42 63-104 29-73 (242)
42 3d8b_A Fidgetin-like protein 1 96.8 0.00091 3.1E-08 51.8 3.5 43 62-104 84-138 (357)
43 3eie_A Vacuolar protein sortin 96.7 0.0012 4.1E-08 50.1 3.6 43 62-104 18-72 (322)
44 3pvs_A Replication-associated 96.6 0.0012 4E-08 53.4 3.2 43 62-104 26-71 (447)
45 1rz3_A Hypothetical protein rb 96.6 0.0023 7.8E-08 45.3 4.3 38 67-104 3-43 (201)
46 1sxj_C Activator 1 40 kDa subu 96.6 0.0021 7.3E-08 48.8 4.4 43 62-104 25-67 (340)
47 3u61_B DNA polymerase accessor 96.6 0.002 6.9E-08 48.2 4.1 43 62-104 26-69 (324)
48 3vfd_A Spastin; ATPase, microt 96.5 0.0025 8.6E-08 49.5 4.5 43 62-104 115-169 (389)
49 2r44_A Uncharacterized protein 96.5 0.0014 4.8E-08 49.3 2.9 41 62-104 27-67 (331)
50 2qp9_X Vacuolar protein sortin 96.5 0.0024 8.2E-08 49.5 4.2 43 62-104 51-105 (355)
51 1ojl_A Transcriptional regulat 96.5 0.002 6.8E-08 49.1 3.5 44 62-105 2-47 (304)
52 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.0023 7.8E-08 49.0 3.8 43 62-104 12-66 (322)
53 3c8u_A Fructokinase; YP_612366 96.4 0.0017 5.9E-08 46.1 2.9 34 71-104 8-43 (208)
54 1g8p_A Magnesium-chelatase 38 96.4 0.0013 4.5E-08 49.2 2.0 43 62-104 24-66 (350)
55 3ec2_A DNA replication protein 96.3 0.0013 4.6E-08 45.3 1.6 18 87-104 42-59 (180)
56 1in4_A RUVB, holliday junction 96.3 0.0027 9.2E-08 48.6 3.5 43 62-104 25-72 (334)
57 1um8_A ATP-dependent CLP prote 96.3 0.0041 1.4E-07 47.8 4.5 43 62-104 21-93 (376)
58 2w58_A DNAI, primosome compone 96.2 0.0018 6.1E-08 45.2 2.0 20 86-105 57-76 (202)
59 4fcw_A Chaperone protein CLPB; 96.2 0.0016 5.5E-08 48.0 1.9 43 62-104 17-68 (311)
60 3te6_A Regulatory protein SIR3 96.2 0.002 6.9E-08 50.4 2.3 42 63-104 21-66 (318)
61 2zan_A Vacuolar protein sortin 96.2 0.0041 1.4E-07 49.7 4.0 43 62-104 134-188 (444)
62 1d2n_A N-ethylmaleimide-sensit 96.1 0.006 2.1E-07 44.7 4.5 43 62-104 33-85 (272)
63 3vaa_A Shikimate kinase, SK; s 96.1 0.0023 7.7E-08 45.1 2.1 18 86-103 28-45 (199)
64 3hws_A ATP-dependent CLP prote 96.0 0.0062 2.1E-07 46.7 4.2 42 63-104 16-72 (363)
65 3nbx_X ATPase RAVA; AAA+ ATPas 95.9 0.0045 1.5E-07 51.0 3.4 42 62-105 22-63 (500)
66 3uie_A Adenylyl-sulfate kinase 95.9 0.0033 1.1E-07 44.3 2.1 17 87-103 29-45 (200)
67 3t61_A Gluconokinase; PSI-biol 95.9 0.0034 1.2E-07 44.0 2.1 17 87-103 22-38 (202)
68 2c9o_A RUVB-like 1; hexameric 95.8 0.0098 3.3E-07 47.5 4.9 43 62-104 37-84 (456)
69 1ypw_A Transitional endoplasmi 95.8 0.0045 1.5E-07 53.4 2.8 43 62-104 204-259 (806)
70 4eun_A Thermoresistant glucoki 95.8 0.0041 1.4E-07 43.7 2.1 18 87-104 33-50 (200)
71 2yvu_A Probable adenylyl-sulfa 95.6 0.0054 1.9E-07 42.4 2.1 18 86-103 16-33 (186)
72 3hu3_A Transitional endoplasmi 95.6 0.009 3.1E-07 48.9 3.7 43 62-104 204-259 (489)
73 2bbw_A Adenylate kinase 4, AK4 95.6 0.0054 1.8E-07 44.5 2.1 18 87-104 31-48 (246)
74 2qt1_A Nicotinamide riboside k 95.5 0.0065 2.2E-07 42.7 2.3 18 87-104 25-42 (207)
75 2hf9_A Probable hydrogenase ni 95.5 0.011 3.6E-07 41.6 3.4 18 86-103 41-58 (226)
76 1l8q_A Chromosomal replication 95.5 0.0055 1.9E-07 46.0 2.0 20 86-105 40-59 (324)
77 1g41_A Heat shock protein HSLU 95.4 0.011 3.8E-07 48.3 3.7 42 62-103 15-70 (444)
78 2cdn_A Adenylate kinase; phosp 95.4 0.0071 2.4E-07 42.3 2.1 17 87-103 24-40 (201)
79 1ixz_A ATP-dependent metallopr 95.3 0.0068 2.3E-07 43.8 2.0 43 62-104 16-70 (254)
80 2wsm_A Hydrogenase expression/ 95.3 0.0097 3.3E-07 41.7 2.7 37 67-103 14-50 (221)
81 2ce7_A Cell division protein F 95.3 0.013 4.3E-07 48.1 3.8 43 62-104 16-70 (476)
82 1znw_A Guanylate kinase, GMP k 95.3 0.0076 2.6E-07 42.7 2.1 18 87-104 24-41 (207)
83 4a74_A DNA repair and recombin 95.2 0.0088 3E-07 41.8 2.3 18 87-104 29-46 (231)
84 1odf_A YGR205W, hypothetical 3 95.2 0.018 6E-07 44.0 4.2 18 87-104 35-52 (290)
85 2kjq_A DNAA-related protein; s 95.2 0.0061 2.1E-07 41.9 1.3 19 87-105 40-58 (149)
86 2ehv_A Hypothetical protein PH 95.1 0.0089 3.1E-07 42.3 2.1 18 87-104 34-51 (251)
87 3t15_A Ribulose bisphosphate c 95.1 0.0091 3.1E-07 45.0 2.3 18 87-104 40-57 (293)
88 1uj2_A Uridine-cytidine kinase 95.0 0.01 3.5E-07 43.3 2.3 17 87-103 26-42 (252)
89 1z6g_A Guanylate kinase; struc 95.0 0.0098 3.4E-07 42.9 2.1 18 87-104 27-44 (218)
90 4e22_A Cytidylate kinase; P-lo 95.0 0.0099 3.4E-07 43.8 2.1 18 87-104 31-48 (252)
91 1ukz_A Uridylate kinase; trans 95.0 0.011 3.7E-07 41.2 2.1 18 87-104 19-36 (203)
92 1iy2_A ATP-dependent metallopr 95.0 0.0099 3.4E-07 43.8 2.0 43 62-104 40-94 (278)
93 2dhr_A FTSH; AAA+ protein, hex 94.9 0.019 6.6E-07 47.3 3.9 43 62-104 31-85 (499)
94 1yrb_A ATP(GTP)binding protein 94.9 0.011 3.9E-07 42.4 2.1 17 87-103 18-34 (262)
95 2z4s_A Chromosomal replication 94.9 0.011 3.6E-07 47.4 2.0 20 86-105 133-152 (440)
96 3k1j_A LON protease, ATP-depen 94.8 0.019 6.5E-07 47.5 3.6 41 62-104 41-81 (604)
97 2x8a_A Nuclear valosin-contain 94.8 0.011 3.9E-07 44.3 2.0 43 62-104 10-65 (274)
98 2jeo_A Uridine-cytidine kinase 94.8 0.012 4E-07 42.8 2.1 17 87-103 29-45 (245)
99 1m7g_A Adenylylsulfate kinase; 94.8 0.013 4.3E-07 41.5 2.1 18 87-104 29-46 (211)
100 3kta_A Chromosome segregation 94.8 0.014 4.7E-07 39.9 2.3 19 87-105 30-48 (182)
101 2ga8_A Hypothetical 39.9 kDa p 94.8 0.024 8.1E-07 45.4 3.9 39 66-104 3-45 (359)
102 3aez_A Pantothenate kinase; tr 94.7 0.013 4.3E-07 45.2 2.1 18 87-104 94-111 (312)
103 2cvh_A DNA repair and recombin 94.7 0.014 4.8E-07 40.6 2.1 17 87-103 24-40 (220)
104 1gvn_B Zeta; postsegregational 94.7 0.012 4E-07 44.5 1.8 18 87-104 37-54 (287)
105 3nwj_A ATSK2; P loop, shikimat 94.6 0.014 4.8E-07 43.8 2.1 18 86-103 51-68 (250)
106 2pcj_A ABC transporter, lipopr 94.6 0.017 5.7E-07 42.2 2.3 18 87-104 34-51 (224)
107 3tif_A Uncharacterized ABC tra 94.5 0.016 5.3E-07 42.7 2.1 18 87-104 35-52 (235)
108 2w0m_A SSO2452; RECA, SSPF, un 94.5 0.017 5.7E-07 40.2 2.1 18 87-104 27-44 (235)
109 2p5t_B PEZT; postsegregational 94.5 0.01 3.5E-07 43.5 1.0 17 87-103 36-52 (253)
110 3pxi_A Negative regulator of g 94.4 0.022 7.6E-07 48.0 3.0 43 62-104 491-542 (758)
111 1ak2_A Adenylate kinase isoenz 94.4 0.018 6.1E-07 41.4 2.1 18 86-103 19-36 (233)
112 3b85_A Phosphate starvation-in 94.3 0.023 8E-07 41.2 2.7 18 87-104 26-43 (208)
113 1sq5_A Pantothenate kinase; P- 94.3 0.02 6.7E-07 43.5 2.3 18 87-104 84-101 (308)
114 3f9v_A Minichromosome maintena 94.2 0.016 5.3E-07 48.4 1.7 44 62-105 295-349 (595)
115 1rj9_A FTSY, signal recognitio 94.2 0.019 6.5E-07 44.1 2.1 18 87-104 106-123 (304)
116 1s96_A Guanylate kinase, GMP k 94.2 0.021 7.1E-07 41.8 2.2 18 87-104 20-37 (219)
117 3lnc_A Guanylate kinase, GMP k 94.2 0.012 4.1E-07 42.2 0.8 18 87-104 31-48 (231)
118 2cbz_A Multidrug resistance-as 94.2 0.02 6.9E-07 42.2 2.1 18 87-104 35-52 (237)
119 1n0w_A DNA repair protein RAD5 94.2 0.021 7.2E-07 40.2 2.1 17 87-103 28-44 (243)
120 1zj6_A ADP-ribosylation factor 94.2 0.042 1.4E-06 37.2 3.5 31 73-104 7-37 (187)
121 1b0u_A Histidine permease; ABC 94.1 0.021 7.1E-07 42.8 2.1 18 87-104 36-53 (262)
122 1g6h_A High-affinity branched- 94.1 0.021 7.3E-07 42.4 2.1 18 87-104 37-54 (257)
123 1ji0_A ABC transporter; ATP bi 94.1 0.022 7.4E-07 42.0 2.1 18 87-104 36-53 (240)
124 2onk_A Molybdate/tungstate ABC 94.1 0.022 7.4E-07 42.3 2.1 18 87-104 28-45 (240)
125 2d2e_A SUFC protein; ABC-ATPas 94.1 0.023 7.7E-07 42.1 2.2 18 87-104 33-50 (250)
126 4g1u_C Hemin import ATP-bindin 94.1 0.022 7.4E-07 42.9 2.1 18 87-104 41-58 (266)
127 1oix_A RAS-related protein RAB 94.1 0.026 8.7E-07 39.0 2.3 18 87-104 33-50 (191)
128 1mv5_A LMRA, multidrug resista 94.1 0.023 7.7E-07 41.9 2.1 18 87-104 32-49 (243)
129 2px0_A Flagellar biosynthesis 94.0 0.024 8.4E-07 43.2 2.3 17 87-103 109-125 (296)
130 3gfo_A Cobalt import ATP-bindi 94.0 0.022 7.7E-07 43.2 2.1 18 87-104 38-55 (275)
131 1htw_A HI0065; nucleotide-bind 94.0 0.025 8.5E-07 39.5 2.2 18 87-104 37-54 (158)
132 3tlx_A Adenylate kinase 2; str 94.0 0.024 8.1E-07 41.5 2.1 18 86-103 32-49 (243)
133 1moz_A ARL1, ADP-ribosylation 94.0 0.027 9.3E-07 37.6 2.3 20 85-104 20-39 (183)
134 2pze_A Cystic fibrosis transme 94.0 0.024 8.1E-07 41.5 2.1 18 87-104 38-55 (229)
135 1f6b_A SAR1; gtpases, N-termin 94.0 0.048 1.6E-06 37.8 3.6 20 85-104 27-46 (198)
136 2f6r_A COA synthase, bifunctio 94.0 0.026 8.8E-07 42.4 2.3 17 87-103 79-95 (281)
137 1lw7_A Transcriptional regulat 94.0 0.021 7.2E-07 44.1 1.9 17 87-103 174-190 (365)
138 2vp4_A Deoxynucleoside kinase; 94.0 0.022 7.7E-07 41.0 1.9 18 87-104 24-41 (230)
139 2ixe_A Antigen peptide transpo 93.9 0.024 8.2E-07 42.7 2.1 18 87-104 49-66 (271)
140 2zu0_C Probable ATP-dependent 93.9 0.025 8.5E-07 42.4 2.2 18 87-104 50-67 (267)
141 1sgw_A Putative ABC transporte 93.9 0.025 8.5E-07 41.4 2.1 18 87-104 39-56 (214)
142 2ff7_A Alpha-hemolysin translo 93.9 0.024 8.4E-07 42.0 2.1 18 87-104 39-56 (247)
143 4b4t_M 26S protease regulatory 93.9 0.04 1.4E-06 44.8 3.4 43 62-104 181-236 (434)
144 1nlf_A Regulatory protein REPA 93.9 0.028 9.6E-07 41.5 2.3 18 87-104 34-51 (279)
145 3m6a_A ATP-dependent protease 93.9 0.048 1.6E-06 44.8 4.0 43 62-104 81-129 (543)
146 2ghi_A Transport protein; mult 93.9 0.026 8.8E-07 42.2 2.1 18 87-104 50-67 (260)
147 3con_A GTPase NRAS; structural 93.8 0.029 1E-06 37.9 2.2 19 86-104 24-42 (190)
148 2yz2_A Putative ABC transporte 93.8 0.026 8.9E-07 42.2 2.1 18 87-104 37-54 (266)
149 1cr0_A DNA primase/helicase; R 93.8 0.029 9.8E-07 41.6 2.3 17 87-103 39-55 (296)
150 2olj_A Amino acid ABC transpor 93.8 0.027 9.1E-07 42.5 2.1 18 87-104 54-71 (263)
151 4b4t_L 26S protease subunit RP 93.7 0.053 1.8E-06 44.1 4.0 43 62-104 181-236 (437)
152 3b9q_A Chloroplast SRP recepto 93.7 0.027 9.3E-07 43.2 2.1 18 87-104 104-121 (302)
153 3tqc_A Pantothenate kinase; bi 93.7 0.052 1.8E-06 42.3 3.7 17 87-103 96-112 (321)
154 1vpl_A ABC transporter, ATP-bi 93.7 0.028 9.6E-07 42.1 2.1 18 87-104 45-62 (256)
155 2qi9_C Vitamin B12 import ATP- 93.7 0.029 9.9E-07 41.9 2.1 18 87-104 30-47 (249)
156 3t1o_A Gliding protein MGLA; G 93.6 0.034 1.2E-06 37.3 2.2 20 85-104 16-35 (198)
157 2ihy_A ABC transporter, ATP-bi 93.6 0.03 1E-06 42.5 2.1 18 87-104 51-68 (279)
158 2qgz_A Helicase loader, putati 93.6 0.029 9.9E-07 42.8 2.0 20 86-105 155-174 (308)
159 2yhs_A FTSY, cell division pro 93.6 0.06 2.1E-06 44.8 4.1 18 87-104 297-314 (503)
160 4b4t_K 26S protease regulatory 93.6 0.064 2.2E-06 43.5 4.1 43 62-104 172-227 (428)
161 2nq2_C Hypothetical ABC transp 93.5 0.032 1.1E-06 41.6 2.1 18 87-104 35-52 (253)
162 3ney_A 55 kDa erythrocyte memb 93.5 0.034 1.2E-06 40.6 2.1 18 87-104 23-40 (197)
163 2qnr_A Septin-2, protein NEDD5 93.5 0.036 1.2E-06 42.1 2.4 19 86-104 21-39 (301)
164 4b4t_J 26S protease regulatory 93.4 0.067 2.3E-06 43.3 4.0 43 62-104 148-203 (405)
165 3p32_A Probable GTPase RV1496/ 93.4 0.075 2.6E-06 41.0 4.1 17 87-103 83-99 (355)
166 3pqc_A Probable GTP-binding pr 93.4 0.046 1.6E-06 36.7 2.5 19 86-104 26-44 (195)
167 2ged_A SR-beta, signal recogni 93.4 0.036 1.2E-06 37.5 2.0 19 86-104 51-69 (193)
168 1svi_A GTP-binding protein YSX 93.3 0.047 1.6E-06 36.9 2.5 19 86-104 26-44 (195)
169 3zvl_A Bifunctional polynucleo 93.3 0.034 1.2E-06 44.0 2.0 18 87-104 262-279 (416)
170 1pui_A ENGB, probable GTP-bind 93.2 0.033 1.1E-06 38.3 1.7 19 86-104 29-47 (210)
171 2dr3_A UPF0273 protein PH0284; 93.2 0.044 1.5E-06 38.6 2.3 17 87-103 27-43 (247)
172 2gza_A Type IV secretion syste 93.2 0.046 1.6E-06 42.6 2.6 20 86-105 178-197 (361)
173 4b4t_H 26S protease regulatory 93.2 0.05 1.7E-06 45.0 2.9 43 62-104 209-264 (467)
174 3nh6_A ATP-binding cassette SU 93.2 0.029 1E-06 43.4 1.4 18 87-104 84-101 (306)
175 1r6b_X CLPA protein; AAA+, N-t 93.1 0.045 1.5E-06 45.9 2.6 43 62-104 458-509 (758)
176 2pjz_A Hypothetical protein ST 93.1 0.041 1.4E-06 41.4 2.1 18 87-104 34-51 (263)
177 2b6h_A ADP-ribosylation factor 93.1 0.026 8.9E-07 38.9 0.9 20 85-104 31-50 (192)
178 1q3t_A Cytidylate kinase; nucl 93.0 0.044 1.5E-06 39.4 2.2 17 87-103 20-36 (236)
179 3llu_A RAS-related GTP-binding 93.0 0.053 1.8E-06 37.3 2.5 19 86-104 23-41 (196)
180 1z0f_A RAB14, member RAS oncog 93.0 0.045 1.5E-06 36.1 2.0 20 85-104 17-36 (179)
181 2v9p_A Replication protein E1; 93.0 0.042 1.4E-06 42.6 2.1 18 87-104 130-147 (305)
182 2eyu_A Twitching motility prot 93.0 0.043 1.5E-06 41.0 2.1 18 87-104 29-46 (261)
183 1qvr_A CLPB protein; coiled co 93.0 0.029 9.9E-07 48.2 1.2 42 63-104 559-609 (854)
184 1ypw_A Transitional endoplasmi 92.9 0.05 1.7E-06 46.9 2.7 43 62-104 477-532 (806)
185 2bbs_A Cystic fibrosis transme 92.9 0.049 1.7E-06 41.6 2.3 18 87-104 68-85 (290)
186 2og2_A Putative signal recogni 92.8 0.046 1.6E-06 43.2 2.1 18 87-104 161-178 (359)
187 3e70_C DPA, signal recognition 92.8 0.047 1.6E-06 42.4 2.1 17 87-103 133-149 (328)
188 3kkq_A RAS-related protein M-R 92.7 0.055 1.9E-06 36.2 2.2 19 86-104 21-39 (183)
189 4eaq_A DTMP kinase, thymidylat 92.6 0.053 1.8E-06 39.5 2.1 18 87-104 30-47 (229)
190 1fzq_A ADP-ribosylation factor 92.6 0.059 2E-06 36.7 2.3 20 85-104 18-37 (181)
191 1p5z_B DCK, deoxycytidine kina 92.6 0.04 1.4E-06 40.3 1.5 18 87-104 28-45 (263)
192 2a9k_A RAS-related protein RAL 92.6 0.059 2E-06 35.8 2.2 19 86-104 21-39 (187)
193 1vma_A Cell division protein F 92.6 0.051 1.8E-06 41.9 2.1 17 87-103 108-124 (306)
194 2v3c_C SRP54, signal recogniti 92.6 0.08 2.7E-06 42.7 3.3 17 87-103 103-119 (432)
195 2y8e_A RAB-protein 6, GH09086P 92.6 0.062 2.1E-06 35.4 2.3 20 85-104 16-35 (179)
196 3cf2_A TER ATPase, transitiona 92.6 0.1 3.4E-06 45.6 4.1 44 62-105 204-260 (806)
197 3cbq_A GTP-binding protein REM 92.5 0.054 1.8E-06 37.6 2.0 18 86-103 26-43 (195)
198 4gzl_A RAS-related C3 botulinu 92.5 0.05 1.7E-06 37.8 1.8 19 85-103 32-50 (204)
199 3th5_A RAS-related C3 botulinu 91.6 0.023 8E-07 39.2 0.0 19 85-103 32-50 (204)
200 1f2t_A RAD50 ABC-ATPase; DNA d 92.4 0.059 2E-06 36.8 2.0 19 87-105 27-45 (149)
201 2pt7_A CAG-ALFA; ATPase, prote 92.3 0.064 2.2E-06 41.4 2.3 19 86-104 174-192 (330)
202 1ls1_A Signal recognition part 92.2 0.061 2.1E-06 40.8 2.1 18 87-104 102-119 (295)
203 1h65_A Chloroplast outer envel 92.2 0.15 5.2E-06 37.3 4.2 19 86-104 42-60 (270)
204 3fvq_A Fe(3+) IONS import ATP- 92.2 0.066 2.2E-06 42.5 2.3 18 87-104 34-51 (359)
205 3c5c_A RAS-like protein 12; GD 92.2 0.066 2.3E-06 36.6 2.0 19 86-104 24-42 (187)
206 2bov_A RAla, RAS-related prote 92.2 0.069 2.4E-06 36.3 2.1 20 85-104 16-35 (206)
207 3tui_C Methionine import ATP-b 92.1 0.062 2.1E-06 42.8 2.1 18 87-104 58-75 (366)
208 3ihw_A Centg3; RAS, centaurin, 92.1 0.068 2.3E-06 36.6 2.1 18 86-103 23-40 (184)
209 3def_A T7I23.11 protein; chlor 92.1 0.16 5.3E-06 37.2 4.1 19 86-104 39-57 (262)
210 4b4t_I 26S protease regulatory 92.1 0.11 3.8E-06 42.6 3.6 43 62-104 182-237 (437)
211 1m2o_B GTP-binding protein SAR 92.0 0.077 2.6E-06 36.4 2.3 20 85-104 25-44 (190)
212 4bas_A ADP-ribosylation factor 92.0 0.074 2.5E-06 35.9 2.1 19 86-104 20-38 (199)
213 3oes_A GTPase rhebl1; small GT 92.0 0.084 2.9E-06 36.3 2.4 19 86-104 27-45 (201)
214 1bif_A 6-phosphofructo-2-kinas 92.0 0.067 2.3E-06 42.8 2.1 17 87-103 43-59 (469)
215 1p9r_A General secretion pathw 92.0 0.12 4E-06 41.6 3.5 38 66-104 150-188 (418)
216 2atv_A RERG, RAS-like estrogen 92.0 0.072 2.5E-06 36.4 2.0 20 85-104 30-49 (196)
217 3cr8_A Sulfate adenylyltranfer 92.0 0.053 1.8E-06 45.2 1.6 18 87-104 373-390 (552)
218 1zu4_A FTSY; GTPase, signal re 92.0 0.066 2.3E-06 41.3 2.0 17 87-103 109-125 (320)
219 2q3h_A RAS homolog gene family 92.0 0.08 2.8E-06 36.1 2.3 19 86-104 23-41 (201)
220 2oil_A CATX-8, RAS-related pro 91.9 0.07 2.4E-06 36.2 2.0 19 86-104 28-46 (193)
221 2axn_A 6-phosphofructo-2-kinas 91.9 0.067 2.3E-06 43.9 2.1 17 87-103 39-55 (520)
222 2obl_A ESCN; ATPase, hydrolase 91.9 0.097 3.3E-06 40.9 2.9 31 74-104 61-92 (347)
223 3tkl_A RAS-related protein RAB 91.9 0.082 2.8E-06 35.6 2.2 20 85-104 18-37 (196)
224 1u0l_A Probable GTPase ENGC; p 91.9 0.14 4.7E-06 38.7 3.7 18 87-104 173-190 (301)
225 1z47_A CYSA, putative ABC-tran 91.9 0.07 2.4E-06 42.2 2.1 18 87-104 45-62 (355)
226 3dz8_A RAS-related protein RAB 91.8 0.09 3.1E-06 35.7 2.4 19 86-104 26-44 (191)
227 2vhj_A Ntpase P4, P4; non- hyd 91.8 0.07 2.4E-06 42.3 2.1 18 87-104 127-144 (331)
228 1ksh_A ARF-like protein 2; sma 91.8 0.084 2.9E-06 35.5 2.2 20 85-104 20-39 (186)
229 2fg5_A RAB-22B, RAS-related pr 91.8 0.085 2.9E-06 36.0 2.3 19 86-104 26-44 (192)
230 1svm_A Large T antigen; AAA+ f 91.8 0.17 5.8E-06 40.1 4.3 18 87-104 173-190 (377)
231 3umf_A Adenylate kinase; rossm 91.7 0.077 2.6E-06 39.1 2.1 17 87-103 33-49 (217)
232 1x3s_A RAS-related protein RAB 91.7 0.082 2.8E-06 35.5 2.0 19 86-104 18-36 (195)
233 2yyz_A Sugar ABC transporter, 91.7 0.075 2.6E-06 42.0 2.1 18 87-104 33-50 (359)
234 1gwn_A RHO-related GTP-binding 91.7 0.088 3E-06 36.9 2.3 19 86-104 31-49 (205)
235 2j1l_A RHO-related GTP-binding 91.6 0.099 3.4E-06 36.6 2.5 19 86-104 37-55 (214)
236 2h17_A ADP-ribosylation factor 91.6 0.1 3.4E-06 35.2 2.4 19 86-104 24-42 (181)
237 1g29_1 MALK, maltose transport 91.6 0.077 2.6E-06 42.0 2.1 18 87-104 33-50 (372)
238 3rlf_A Maltose/maltodextrin im 91.6 0.076 2.6E-06 42.5 2.1 18 87-104 33-50 (381)
239 2o52_A RAS-related protein RAB 91.6 0.1 3.5E-06 36.0 2.5 19 86-104 28-46 (200)
240 2it1_A 362AA long hypothetical 91.6 0.078 2.7E-06 42.0 2.1 18 87-104 33-50 (362)
241 2dpy_A FLII, flagellum-specifi 91.5 0.15 5E-06 41.1 3.7 31 74-104 147-178 (438)
242 3reg_A RHO-like small GTPase; 91.5 0.086 2.9E-06 35.8 2.0 19 86-104 26-44 (194)
243 2yv5_A YJEQ protein; hydrolase 91.5 0.1 3.5E-06 39.6 2.6 18 87-104 169-186 (302)
244 2a5j_A RAS-related protein RAB 91.5 0.084 2.9E-06 35.9 2.0 19 86-104 24-42 (191)
245 1v43_A Sugar-binding transport 91.5 0.081 2.8E-06 42.0 2.1 18 87-104 41-58 (372)
246 2h57_A ADP-ribosylation factor 91.5 0.093 3.2E-06 35.6 2.1 19 86-104 24-42 (190)
247 1pzn_A RAD51, DNA repair and r 91.4 0.091 3.1E-06 40.8 2.3 18 87-104 135-152 (349)
248 2npi_A Protein CLP1; CLP1-PCF1 91.4 0.091 3.1E-06 42.7 2.4 19 86-104 141-159 (460)
249 1zd9_A ADP-ribosylation factor 91.4 0.09 3.1E-06 35.7 2.0 19 86-104 25-43 (188)
250 3lxx_A GTPase IMAP family memb 91.4 0.094 3.2E-06 37.5 2.2 19 86-104 32-50 (239)
251 2qu8_A Putative nucleolar GTP- 91.4 0.095 3.2E-06 37.0 2.2 19 86-104 32-50 (228)
252 2atx_A Small GTP binding prote 91.4 0.1 3.4E-06 35.4 2.3 19 86-104 21-39 (194)
253 1a5t_A Delta prime, HOLB; zinc 91.4 0.22 7.7E-06 37.8 4.4 35 69-103 9-44 (334)
254 1z06_A RAS-related protein RAB 91.4 0.092 3.2E-06 35.5 2.0 19 86-104 23-41 (189)
255 2il1_A RAB12; G-protein, GDP, 91.3 0.094 3.2E-06 35.9 2.1 19 86-104 29-47 (192)
256 3end_A Light-independent proto 91.3 0.091 3.1E-06 39.0 2.1 17 87-103 45-61 (307)
257 2fv8_A H6, RHO-related GTP-bin 91.2 0.1 3.6E-06 36.1 2.3 19 86-104 28-46 (207)
258 3gd7_A Fusion complex of cysti 91.2 0.11 3.7E-06 41.5 2.6 18 87-104 51-68 (390)
259 3d31_A Sulfate/molybdate ABC t 91.2 0.066 2.2E-06 42.1 1.3 18 87-104 30-47 (348)
260 2gf9_A RAS-related protein RAB 91.1 0.11 3.7E-06 35.2 2.2 19 86-104 25-43 (189)
261 2ew1_A RAS-related protein RAB 91.1 0.12 4E-06 36.3 2.4 19 86-104 29-47 (201)
262 3qks_A DNA double-strand break 91.1 0.098 3.4E-06 37.3 2.0 19 87-105 27-45 (203)
263 1yqt_A RNAse L inhibitor; ATP- 91.1 0.094 3.2E-06 43.2 2.2 18 87-104 316-333 (538)
264 3cph_A RAS-related protein SEC 91.0 0.11 3.8E-06 35.5 2.2 19 86-104 23-41 (213)
265 2qm8_A GTPase/ATPase; G protei 91.0 0.21 7E-06 38.6 3.9 18 87-104 59-76 (337)
266 2p5s_A RAS and EF-hand domain 91.0 0.11 3.7E-06 35.6 2.1 19 86-104 31-49 (199)
267 1mky_A Probable GTP-binding pr 91.0 0.17 5.8E-06 40.0 3.5 18 87-104 184-201 (439)
268 2p67_A LAO/AO transport system 90.9 0.25 8.6E-06 37.9 4.4 17 87-103 60-76 (341)
269 2f7s_A C25KG, RAS-related prot 90.9 0.11 3.9E-06 35.9 2.2 19 86-104 28-46 (217)
270 1zcb_A G alpha I/13; GTP-bindi 90.9 0.1 3.4E-06 41.1 2.1 16 87-102 37-52 (362)
271 3b60_A Lipid A export ATP-bind 90.9 0.11 3.9E-06 42.6 2.5 18 87-104 373-390 (582)
272 2ewv_A Twitching motility prot 90.9 0.1 3.5E-06 40.9 2.1 18 87-104 140-157 (372)
273 3ozx_A RNAse L inhibitor; ATP 90.9 0.099 3.4E-06 43.2 2.1 18 87-104 298-315 (538)
274 2x77_A ADP-ribosylation factor 90.8 0.12 4E-06 34.9 2.1 20 85-104 24-43 (189)
275 1tue_A Replication protein E1; 90.8 0.15 5.2E-06 38.1 2.9 18 87-104 62-79 (212)
276 2hup_A RAS-related protein RAB 90.8 0.12 4.2E-06 35.7 2.3 19 86-104 32-50 (201)
277 1oxx_K GLCV, glucose, ABC tran 90.7 0.058 2E-06 42.4 0.6 18 87-104 35-52 (353)
278 2xxa_A Signal recognition part 90.7 0.11 3.7E-06 41.9 2.1 17 87-103 104-120 (433)
279 2gco_A H9, RHO-related GTP-bin 90.6 0.14 4.7E-06 35.3 2.4 19 86-104 28-46 (201)
280 1j8m_F SRP54, signal recogniti 90.6 0.089 3E-06 40.2 1.5 17 87-103 102-118 (297)
281 1yqt_A RNAse L inhibitor; ATP- 90.5 0.11 3.9E-06 42.7 2.2 18 87-104 51-68 (538)
282 3qkt_A DNA double-strand break 90.4 0.12 4E-06 39.6 2.0 19 87-105 27-45 (339)
283 3b5x_A Lipid A export ATP-bind 90.4 0.12 4.1E-06 42.5 2.2 18 87-104 373-390 (582)
284 3a8t_A Adenylate isopentenyltr 90.4 0.12 4.1E-06 40.9 2.1 17 87-103 44-60 (339)
285 2xtp_A GTPase IMAP family memb 90.4 0.14 4.8E-06 36.9 2.3 19 86-104 25-43 (260)
286 2qag_C Septin-7; cell cycle, c 90.3 0.13 4.5E-06 41.3 2.3 18 87-104 35-52 (418)
287 3q3j_B RHO-related GTP-binding 90.2 0.13 4.5E-06 36.1 2.0 19 86-104 30-48 (214)
288 2zts_A Putative uncharacterize 90.2 0.14 4.7E-06 35.9 2.1 17 87-103 34-50 (251)
289 3ozx_A RNAse L inhibitor; ATP 90.1 0.13 4.4E-06 42.5 2.1 18 87-104 29-46 (538)
290 2zr9_A Protein RECA, recombina 90.1 0.14 5E-06 39.8 2.3 17 87-103 65-81 (349)
291 2qag_B Septin-6, protein NEDD5 90.0 0.11 3.8E-06 42.2 1.7 20 86-105 45-64 (427)
292 3jvv_A Twitching mobility prot 90.0 0.14 4.7E-06 40.3 2.1 19 86-104 126-144 (356)
293 2qag_A Septin-2, protein NEDD5 90.0 0.12 4E-06 40.3 1.7 21 85-105 39-59 (361)
294 4dhe_A Probable GTP-binding pr 89.9 0.089 3.1E-06 36.5 0.9 19 86-104 32-50 (223)
295 1m8p_A Sulfate adenylyltransfe 89.8 0.14 4.7E-06 42.7 2.1 17 87-103 400-416 (573)
296 3fwy_A Light-independent proto 89.7 0.15 5E-06 39.3 2.1 18 85-102 49-67 (314)
297 3gj0_A GTP-binding nuclear pro 89.7 0.14 4.7E-06 35.7 1.7 18 85-102 17-34 (221)
298 1tf7_A KAIC; homohexamer, hexa 89.6 0.16 5.4E-06 41.2 2.3 17 87-103 43-59 (525)
299 3bk7_A ABC transporter ATP-bin 89.6 0.15 5.1E-06 42.8 2.2 18 87-104 386-403 (607)
300 4a82_A Cystic fibrosis transme 89.6 0.12 4.2E-06 42.5 1.6 18 87-104 371-388 (578)
301 3upu_A ATP-dependent DNA helic 89.5 0.25 8.4E-06 39.2 3.3 17 87-103 49-65 (459)
302 2yl4_A ATP-binding cassette SU 89.4 0.12 4.1E-06 42.6 1.5 18 87-104 374-391 (595)
303 3bk7_A ABC transporter ATP-bin 89.4 0.15 5.2E-06 42.7 2.1 18 87-104 121-138 (607)
304 2ffh_A Protein (FFH); SRP54, s 89.4 0.16 5.4E-06 41.1 2.1 17 87-103 102-118 (425)
305 1e69_A Chromosome segregation 89.3 0.12 4.2E-06 39.1 1.4 19 87-105 28-46 (322)
306 2aka_B Dynamin-1; fusion prote 89.3 0.47 1.6E-05 34.4 4.5 19 86-104 29-47 (299)
307 3kl4_A SRP54, signal recogniti 89.3 0.14 4.7E-06 41.6 1.7 17 87-103 101-117 (433)
308 2rcn_A Probable GTPase ENGC; Y 89.2 0.16 5.6E-06 40.2 2.1 18 87-104 219-236 (358)
309 1x6v_B Bifunctional 3'-phospho 89.2 0.16 5.4E-06 43.2 2.1 17 87-103 56-72 (630)
310 2oap_1 GSPE-2, type II secreti 89.2 0.18 6.1E-06 41.5 2.4 19 86-104 263-281 (511)
311 3qf4_B Uncharacterized ABC tra 89.1 0.14 4.7E-06 42.4 1.6 18 87-104 385-402 (598)
312 3qf4_A ABC transporter, ATP-bi 89.1 0.16 5.3E-06 42.1 1.9 18 87-104 373-390 (587)
313 3io3_A DEHA2D07832P; chaperone 89.1 0.24 8.2E-06 38.7 2.9 19 85-103 19-38 (348)
314 2g3y_A GTP-binding protein GEM 89.1 0.19 6.4E-06 36.1 2.1 19 86-104 40-58 (211)
315 3lda_A DNA repair protein RAD5 89.1 0.19 6.4E-06 40.2 2.3 17 87-103 182-198 (400)
316 3j16_B RLI1P; ribosome recycli 89.1 0.17 5.7E-06 42.6 2.1 18 87-104 382-399 (608)
317 1g8f_A Sulfate adenylyltransfe 89.0 0.13 4.6E-06 42.5 1.5 17 87-103 399-415 (511)
318 1w1w_A Structural maintenance 89.0 0.17 5.9E-06 39.7 2.0 19 87-105 30-48 (430)
319 3ice_A Transcription terminati 89.0 0.3 1E-05 40.0 3.5 19 85-103 176-194 (422)
320 2www_A Methylmalonic aciduria 88.9 0.18 6.1E-06 39.0 2.1 18 87-104 78-95 (349)
321 3j16_B RLI1P; ribosome recycli 88.9 0.17 5.9E-06 42.5 2.1 18 87-104 107-124 (608)
322 3bh0_A DNAB-like replicative h 88.8 0.19 6.5E-06 38.2 2.1 17 87-103 72-88 (315)
323 3cpj_B GTP-binding protein YPT 88.8 0.19 6.4E-06 35.2 2.0 20 85-104 15-34 (223)
324 3hr8_A Protein RECA; alpha and 88.8 0.2 7E-06 39.5 2.3 17 87-103 65-81 (356)
325 3euj_A Chromosome partition pr 88.8 0.19 6.4E-06 41.4 2.2 18 87-104 33-50 (483)
326 2yc2_C IFT27, small RAB-relate 88.7 0.082 2.8E-06 35.9 -0.0 19 86-104 23-41 (208)
327 3lxw_A GTPase IMAP family memb 88.5 0.21 7.4E-06 36.3 2.1 20 85-104 23-42 (247)
328 3dm5_A SRP54, signal recogniti 88.4 0.2 6.8E-06 40.9 2.1 17 87-103 104-120 (443)
329 3lv8_A DTMP kinase, thymidylat 88.4 0.25 8.4E-06 36.7 2.4 18 87-104 31-48 (236)
330 2z43_A DNA repair and recombin 88.4 0.23 7.9E-06 37.7 2.3 17 87-103 111-127 (324)
331 1qhl_A Protein (cell division 88.3 0.082 2.8E-06 39.2 -0.2 19 87-105 31-49 (227)
332 1u94_A RECA protein, recombina 88.2 0.22 7.4E-06 39.1 2.1 17 87-103 67-83 (356)
333 4b3f_X DNA-binding protein smu 88.2 0.3 1E-05 40.5 3.0 18 87-104 209-227 (646)
334 1tq4_A IIGP1, interferon-induc 88.1 0.24 8.3E-06 39.8 2.4 18 87-104 73-90 (413)
335 1u0j_A DNA replication protein 88.1 0.53 1.8E-05 36.0 4.2 19 86-104 107-125 (267)
336 1tf7_A KAIC; homohexamer, hexa 88.1 0.25 8.4E-06 40.1 2.4 18 87-104 285-302 (525)
337 3ld9_A DTMP kinase, thymidylat 88.0 0.24 8.2E-06 36.6 2.1 18 87-104 25-42 (223)
338 3v9p_A DTMP kinase, thymidylat 87.8 0.18 6.1E-06 37.3 1.4 18 87-104 29-46 (227)
339 2j37_W Signal recognition part 87.8 0.23 7.8E-06 41.0 2.1 17 87-103 105-121 (504)
340 1t9h_A YLOQ, probable GTPase E 87.8 0.11 3.8E-06 40.2 0.2 18 87-104 177-194 (307)
341 2i1q_A DNA repair and recombin 87.7 0.27 9.3E-06 36.9 2.3 17 87-103 102-118 (322)
342 2gno_A DNA polymerase III, gam 87.7 0.44 1.5E-05 36.3 3.5 38 66-103 1-38 (305)
343 3qf7_A RAD50; ABC-ATPase, ATPa 87.6 0.24 8.3E-06 38.5 2.0 18 87-104 27-44 (365)
344 2gks_A Bifunctional SAT/APS ki 87.6 0.24 8.2E-06 41.0 2.1 17 87-103 376-392 (546)
345 2r6a_A DNAB helicase, replicat 87.3 0.26 8.9E-06 39.2 2.1 17 87-103 207-223 (454)
346 2qmh_A HPR kinase/phosphorylas 87.3 0.24 8.2E-06 36.9 1.8 17 87-103 38-54 (205)
347 2o5v_A DNA replication and rep 87.3 0.26 8.8E-06 38.8 2.0 19 87-105 30-48 (359)
348 3zq6_A Putative arsenical pump 87.2 0.25 8.5E-06 37.6 1.9 17 87-103 18-34 (324)
349 3ug7_A Arsenical pump-driving 87.1 0.55 1.9E-05 36.2 3.8 17 87-103 30-46 (349)
350 2oze_A ORF delta'; para, walke 87.1 0.31 1.1E-05 35.8 2.3 17 87-103 38-57 (298)
351 1jwy_B Dynamin A GTPase domain 87.0 0.65 2.2E-05 34.1 4.0 18 87-104 28-45 (315)
352 4aby_A DNA repair protein RECN 87.0 0.11 3.8E-06 40.0 -0.2 18 87-104 64-81 (415)
353 4dkx_A RAS-related protein RAB 86.9 0.31 1E-05 35.2 2.1 19 85-103 15-33 (216)
354 1v5w_A DMC1, meiotic recombina 86.8 0.29 1E-05 37.6 2.1 17 87-103 126-142 (343)
355 1ny5_A Transcriptional regulat 86.8 0.55 1.9E-05 36.6 3.7 43 63-105 138-182 (387)
356 3k9g_A PF-32 protein; ssgcid, 86.6 0.26 8.9E-06 35.6 1.6 17 87-103 31-48 (267)
357 2q6t_A DNAB replication FORK h 86.3 0.35 1.2E-05 38.3 2.3 17 87-103 204-220 (444)
358 2e87_A Hypothetical protein PH 86.2 0.33 1.1E-05 37.2 2.1 18 87-104 171-188 (357)
359 1puj_A YLQF, conserved hypothe 86.1 0.72 2.5E-05 34.7 3.9 19 86-104 123-141 (282)
360 3ux8_A Excinuclease ABC, A sub 86.0 0.25 8.6E-06 41.2 1.5 17 87-103 352-368 (670)
361 2ph1_A Nucleotide-binding prot 86.0 0.29 9.9E-06 35.6 1.6 17 87-103 22-39 (262)
362 3iqw_A Tail-anchored protein t 86.0 0.43 1.5E-05 37.0 2.7 17 87-103 20-36 (334)
363 4ag6_A VIRB4 ATPase, type IV s 85.9 0.35 1.2E-05 37.2 2.1 18 86-103 38-55 (392)
364 3tqf_A HPR(Ser) kinase; transf 85.8 0.41 1.4E-05 35.1 2.3 17 87-103 20-36 (181)
365 3e1s_A Exodeoxyribonuclease V, 85.7 0.52 1.8E-05 39.1 3.2 32 70-104 193-225 (574)
366 2wkq_A NPH1-1, RAS-related C3 85.6 0.41 1.4E-05 35.0 2.3 19 86-104 158-176 (332)
367 2woo_A ATPase GET3; tail-ancho 85.5 0.51 1.8E-05 36.0 2.9 17 87-103 23-39 (329)
368 4f4c_A Multidrug resistance pr 85.4 0.23 7.8E-06 45.0 0.9 21 86-106 1108-1128(1321)
369 3g5u_A MCG1178, multidrug resi 85.2 0.37 1.3E-05 43.5 2.2 19 87-105 1063-1081(1284)
370 3o47_A ADP-ribosylation factor 84.9 0.43 1.5E-05 36.4 2.2 18 87-104 169-186 (329)
371 1sky_E F1-ATPase, F1-ATP synth 84.6 0.53 1.8E-05 38.8 2.7 18 86-103 154-171 (473)
372 4a1f_A DNAB helicase, replicat 84.5 0.78 2.7E-05 35.9 3.6 19 85-103 47-66 (338)
373 3bgw_A DNAB-like replicative h 84.4 0.48 1.6E-05 38.0 2.3 17 87-103 201-217 (444)
374 1udx_A The GTP-binding protein 84.2 0.34 1.2E-05 38.9 1.4 18 87-104 161-178 (416)
375 3cnl_A YLQF, putative uncharac 84.2 0.55 1.9E-05 35.0 2.4 19 86-104 102-120 (262)
376 1ni3_A YCHF GTPase, YCHF GTP-b 84.1 0.5 1.7E-05 37.7 2.3 19 86-104 23-41 (392)
377 3szr_A Interferon-induced GTP- 84.1 0.35 1.2E-05 40.3 1.4 18 87-104 49-66 (608)
378 2iw3_A Elongation factor 3A; a 84.0 0.44 1.5E-05 42.6 2.1 18 87-104 465-482 (986)
379 4f4c_A Multidrug resistance pr 83.9 0.5 1.7E-05 42.8 2.5 18 87-104 448-465 (1321)
380 2woj_A ATPase GET3; tail-ancho 83.8 0.69 2.4E-05 35.9 3.0 17 87-103 22-38 (354)
381 3c5h_A Glucocorticoid receptor 83.6 0.62 2.1E-05 33.9 2.5 19 86-104 22-49 (255)
382 2qtf_A Protein HFLX, GTP-bindi 83.6 0.52 1.8E-05 36.9 2.2 18 87-104 183-200 (364)
383 3l0i_B RAS-related protein RAB 83.5 0.13 4.4E-06 35.3 -1.2 18 86-103 36-53 (199)
384 1xp8_A RECA protein, recombina 83.2 0.59 2E-05 36.8 2.3 17 87-103 78-94 (366)
385 2hjg_A GTP-binding protein ENG 83.2 0.82 2.8E-05 36.0 3.2 18 87-104 179-196 (436)
386 3g5u_A MCG1178, multidrug resi 82.8 0.52 1.8E-05 42.6 2.1 18 87-104 420-437 (1284)
387 3auy_A DNA double-strand break 82.3 0.66 2.2E-05 35.8 2.3 19 87-105 29-47 (371)
388 3fkq_A NTRC-like two-domain pr 82.1 0.52 1.8E-05 36.4 1.6 17 87-103 147-164 (373)
389 3dpu_A RAB family protein; roc 82.0 0.61 2.1E-05 37.7 2.1 18 87-104 45-62 (535)
390 3ez2_A Plasmid partition prote 81.8 0.54 1.8E-05 36.3 1.6 17 87-103 112-129 (398)
391 3io5_A Recombination and repai 81.7 0.72 2.5E-05 36.6 2.3 17 87-103 32-48 (333)
392 3hdt_A Putative kinase; struct 81.5 0.78 2.7E-05 33.5 2.3 17 87-103 18-34 (223)
393 1of1_A Thymidine kinase; trans 81.4 0.55 1.9E-05 37.6 1.6 18 87-104 53-70 (376)
394 1q57_A DNA primase/helicase; d 81.3 0.56 1.9E-05 37.5 1.6 17 87-103 246-262 (503)
395 2iw3_A Elongation factor 3A; a 81.2 0.41 1.4E-05 42.8 0.8 18 87-104 703-720 (986)
396 2x2e_A Dynamin-1; nitration, h 81.0 1.3 4.6E-05 33.7 3.6 19 86-104 34-52 (353)
397 3ec1_A YQEH GTPase; atnos1, at 80.7 1 3.4E-05 35.1 2.8 19 86-104 165-183 (369)
398 4dcu_A GTP-binding protein ENG 80.7 0.75 2.6E-05 36.5 2.1 18 86-103 26-43 (456)
399 1ko7_A HPR kinase/phosphatase; 80.6 0.83 2.8E-05 35.6 2.3 17 87-103 148-164 (314)
400 3h2y_A GTPase family protein; 80.6 1.2 4E-05 34.8 3.1 19 86-104 163-181 (368)
401 3ux8_A Excinuclease ABC, A sub 80.4 0.6 2E-05 38.9 1.5 14 87-100 48-61 (670)
402 3l0o_A Transcription terminati 80.3 1.4 4.9E-05 36.1 3.7 31 73-103 164-195 (427)
403 3cio_A ETK, tyrosine-protein k 80.2 2.1 7.1E-05 32.2 4.4 17 87-103 108-125 (299)
404 3llm_A ATP-dependent RNA helic 79.6 1.5 5E-05 31.2 3.2 16 87-102 80-95 (235)
405 1lnz_A SPO0B-associated GTP-bi 79.6 0.78 2.7E-05 35.6 1.8 18 87-104 162-179 (342)
406 2ohf_A Protein OLA1, GTP-bindi 79.4 0.86 2.9E-05 36.6 2.1 20 85-104 24-43 (396)
407 1w36_D RECD, exodeoxyribonucle 79.2 0.87 3E-05 37.8 2.1 17 87-103 168-184 (608)
408 3cf2_A TER ATPase, transitiona 79.0 0.84 2.9E-05 39.9 2.0 43 62-104 477-532 (806)
409 3t34_A Dynamin-related protein 78.5 1 3.5E-05 34.3 2.2 19 86-104 37-55 (360)
410 3dzd_A Transcriptional regulat 78.4 1.3 4.5E-05 34.3 2.8 44 62-105 129-174 (368)
411 2vf7_A UVRA2, excinuclease ABC 78.0 0.48 1.6E-05 41.5 0.2 16 87-102 527-542 (842)
412 1ewq_A DNA mismatch repair pro 77.3 1 3.5E-05 38.9 2.0 17 87-103 580-596 (765)
413 2h5e_A Peptide chain release f 77.2 1.2 4E-05 36.6 2.3 20 85-104 15-34 (529)
414 1knx_A Probable HPR(Ser) kinas 77.0 1.3 4.3E-05 34.6 2.3 17 87-103 151-167 (312)
415 3tr5_A RF-3, peptide chain rel 76.9 1.2 4.1E-05 36.6 2.3 19 85-103 15-33 (528)
416 2ygr_A Uvrabc system protein A 76.1 0.91 3.1E-05 40.7 1.5 17 87-103 672-688 (993)
417 3lvq_E ARF-GAP with SH3 domain 76.0 1.3 4.3E-05 35.1 2.1 17 87-103 326-342 (497)
418 1wb9_A DNA mismatch repair pro 75.8 1.2 4.1E-05 38.6 2.1 17 87-103 611-627 (800)
419 2gk6_A Regulator of nonsense t 75.7 1.3 4.3E-05 36.7 2.1 34 66-102 180-214 (624)
420 3bfv_A CAPA1, CAPB2, membrane 75.4 2.6 8.9E-05 31.2 3.7 17 87-103 86-103 (271)
421 3p26_A Elongation factor 1 alp 75.4 1.2 4E-05 35.7 1.8 19 85-103 35-53 (483)
422 3ez9_A Para; DNA binding, wing 74.8 0.6 2E-05 36.2 -0.0 17 87-103 115-132 (403)
423 2r6f_A Excinuclease ABC subuni 74.4 0.87 3E-05 40.7 0.9 17 87-103 654-670 (972)
424 3la6_A Tyrosine-protein kinase 74.0 3.8 0.00013 30.7 4.3 17 87-103 96-113 (286)
425 4akg_A Glutathione S-transfera 73.9 1.3 4.5E-05 43.3 2.0 18 87-104 1613-1630(2695)
426 1n0u_A EF-2, elongation factor 73.9 1.2 4E-05 38.6 1.6 19 86-104 22-40 (842)
427 1zun_B Sulfate adenylate trans 73.2 1.5 5E-05 34.6 1.8 18 86-103 27-44 (434)
428 2qpt_A EH domain-containing pr 73.1 1.8 6.1E-05 35.7 2.4 18 87-104 69-86 (550)
429 3geh_A MNME, tRNA modification 72.5 1.9 6.4E-05 34.9 2.3 18 86-103 227-244 (462)
430 4ad8_A DNA repair protein RECN 72.2 0.67 2.3E-05 37.4 -0.4 19 87-105 64-82 (517)
431 1cip_A Protein (guanine nucleo 71.8 1.9 6.4E-05 33.7 2.1 16 87-102 36-51 (353)
432 3vkg_A Dynein heavy chain, cyt 71.5 2.8 9.7E-05 41.8 3.7 18 87-104 1650-1667(3245)
433 2ck3_D ATP synthase subunit be 71.1 2.6 8.9E-05 34.9 2.9 30 74-103 143-173 (482)
434 3thx_A DNA mismatch repair pro 70.9 1.8 6.3E-05 38.2 2.1 17 87-103 666-682 (934)
435 1f5n_A Interferon-induced guan 70.9 3.5 0.00012 34.6 3.8 18 87-104 42-59 (592)
436 2o8b_B DNA mismatch repair pro 69.5 2.1 7.1E-05 38.2 2.1 17 87-103 793-809 (1022)
437 1e9r_A Conjugal transfer prote 69.3 2.5 8.5E-05 32.8 2.3 17 87-103 57-73 (437)
438 1ihu_A Arsenical pump-driving 69.0 2.2 7.7E-05 34.7 2.1 16 87-102 331-346 (589)
439 3vkw_A Replicase large subunit 69.0 2.5 8.7E-05 34.5 2.4 18 87-104 165-182 (446)
440 3gee_A MNME, tRNA modification 68.9 2 6.8E-05 34.8 1.8 18 86-103 236-253 (476)
441 1fx0_B ATP synthase beta chain 68.7 3.1 0.00011 34.5 3.0 19 85-103 167-185 (498)
442 2wjy_A Regulator of nonsense t 67.6 2.4 8.3E-05 36.6 2.1 33 67-102 357-390 (800)
443 3lfu_A DNA helicase II; SF1 he 67.6 2.4 8E-05 34.3 1.9 16 86-101 25-40 (647)
444 3thx_B DNA mismatch repair pro 67.5 1.8 6E-05 38.3 1.3 17 87-103 677-693 (918)
445 1azs_C GS-alpha; complex (lyas 66.5 3 0.0001 33.4 2.3 16 87-102 44-59 (402)
446 2c61_A A-type ATP synthase non 66.0 4 0.00014 33.6 3.1 19 85-103 154-172 (469)
447 3cmu_A Protein RECA, recombina 65.6 2.7 9.1E-05 40.4 2.1 18 86-103 1430-1447(2050)
448 2elf_A Protein translation elo 65.3 2.9 9.9E-05 32.6 2.0 19 85-103 23-41 (370)
449 3pih_A Uvrabc system protein A 64.8 2.5 8.6E-05 37.4 1.7 15 87-101 614-628 (916)
450 1j3b_A ATP-dependent phosphoen 64.4 2.4 8.1E-05 35.5 1.4 15 87-101 229-243 (529)
451 3gqb_B V-type ATP synthase bet 64.2 4.5 0.00015 33.4 3.0 19 85-103 149-167 (464)
452 4dcu_A GTP-binding protein ENG 64.2 3.3 0.00011 32.7 2.1 18 87-104 199-216 (456)
453 1ytm_A Phosphoenolpyruvate car 64.1 2.7 9.3E-05 35.2 1.7 15 87-101 239-253 (532)
454 3vr4_A V-type sodium ATPase ca 64.1 5.3 0.00018 34.0 3.5 30 74-103 222-252 (600)
455 1ii2_A Phosphoenolpyruvate car 64.0 2.8 9.4E-05 35.1 1.7 15 87-101 217-231 (524)
456 2olr_A Phosphoenolpyruvate car 63.7 2.8 9.6E-05 35.3 1.7 15 87-101 245-259 (540)
457 2xzl_A ATP-dependent helicase 63.3 3.3 0.00011 35.7 2.1 33 67-102 361-394 (802)
458 2ius_A DNA translocase FTSK; n 63.1 3.4 0.00012 34.1 2.1 17 87-103 171-187 (512)
459 2j69_A Bacterial dynamin-like 62.9 3.5 0.00012 34.8 2.2 20 85-104 71-90 (695)
460 3vr4_D V-type sodium ATPase su 62.7 5.1 0.00017 33.0 3.1 19 85-103 153-171 (465)
461 3izq_1 HBS1P, elongation facto 62.1 3.8 0.00013 34.1 2.3 19 86-104 170-188 (611)
462 3vqt_A RF-3, peptide chain rel 61.7 3.7 0.00013 33.8 2.1 19 85-103 33-51 (548)
463 3f8t_A Predicted ATPase involv 61.5 4 0.00014 34.1 2.3 40 62-103 214-258 (506)
464 2fz4_A DNA repair protein RAD2 60.9 4.7 0.00016 29.0 2.3 18 86-103 111-128 (237)
465 1w4r_A Thymidine kinase; type 60.9 4.6 0.00016 29.4 2.3 19 87-105 24-43 (195)
466 3cmw_A Protein RECA, recombina 60.6 3.8 0.00013 38.7 2.1 18 87-104 1086-1103(1706)
467 3mca_A HBS1, elongation factor 59.7 4.2 0.00014 33.7 2.1 17 87-103 181-197 (592)
468 3cmw_A Protein RECA, recombina 59.4 4.1 0.00014 38.5 2.1 17 87-103 736-752 (1706)
469 2vf7_A UVRA2, excinuclease ABC 59.3 3.5 0.00012 36.1 1.6 15 87-101 40-54 (842)
470 3j2k_7 ERF3, eukaryotic polype 59.1 4.6 0.00016 32.0 2.2 19 85-103 19-37 (439)
471 2xau_A PRE-mRNA-splicing facto 58.1 6.6 0.00022 33.6 3.1 32 69-102 97-128 (773)
472 4akg_A Glutathione S-transfera 56.8 4.7 0.00016 39.6 2.1 18 86-103 1270-1287(2695)
473 1wb1_A Translation elongation 56.8 5.6 0.00019 32.0 2.3 19 86-104 22-40 (482)
474 3qq5_A Small GTP-binding prote 56.1 1.6 5.4E-05 35.0 -1.1 18 86-103 37-54 (423)
475 2qe7_A ATP synthase subunit al 55.2 7.7 0.00026 32.2 2.9 17 85-101 164-180 (502)
476 1r5b_A Eukaryotic peptide chai 54.8 4.7 0.00016 32.2 1.6 19 85-103 45-63 (467)
477 3cmu_A Protein RECA, recombina 54.7 5.4 0.00018 38.4 2.1 17 87-103 387-403 (2050)
478 3mfy_A V-type ATP synthase alp 54.4 4.4 0.00015 34.5 1.4 30 74-103 217-247 (588)
479 3q5d_A Atlastin-1; G protein, 54.0 14 0.00049 29.9 4.3 18 87-104 71-88 (447)
480 4fn5_A EF-G 1, elongation fact 53.2 5.7 0.00019 33.5 1.9 18 86-103 16-33 (709)
481 2ygr_A Uvrabc system protein A 52.4 6 0.0002 35.5 1.9 15 87-101 50-64 (993)
482 2r6f_A Excinuclease ABC subuni 52.2 6 0.00021 35.4 1.9 15 87-101 48-62 (972)
483 4a9a_A Ribosome-interacting GT 52.0 5.1 0.00017 31.7 1.3 18 86-103 75-92 (376)
484 3b6e_A Interferon-induced heli 51.0 7.7 0.00026 26.1 2.0 18 85-102 50-67 (216)
485 3pih_A Uvrabc system protein A 50.6 5.6 0.00019 35.1 1.5 15 87-101 28-42 (916)
486 2ck3_A ATP synthase subunit al 49.2 15 0.00053 30.5 3.8 27 74-100 152-179 (510)
487 3gqb_A V-type ATP synthase alp 49.2 6.7 0.00023 33.3 1.7 19 85-103 223-241 (578)
488 1xzp_A Probable tRNA modificat 48.1 2.8 9.4E-05 34.1 -0.8 18 86-103 246-263 (482)
489 3e2i_A Thymidine kinase; Zn-bi 48.1 9.8 0.00033 28.3 2.3 18 87-104 32-50 (219)
490 3oaa_A ATP synthase subunit al 46.8 15 0.00051 30.7 3.4 16 85-100 164-179 (513)
491 4ehx_A Tetraacyldisaccharide 4 46.5 8.7 0.0003 29.5 1.8 14 91-104 46-59 (315)
492 2r9v_A ATP synthase subunit al 45.5 15 0.00052 30.6 3.3 17 85-101 177-193 (515)
493 1g5t_A COB(I)alamin adenosyltr 43.7 11 0.00038 27.3 1.9 17 86-102 31-47 (196)
494 3pey_A ATP-dependent RNA helic 43.3 26 0.00089 25.5 3.9 29 73-101 34-62 (395)
495 2j9r_A Thymidine kinase; TK1, 42.7 11 0.00036 27.8 1.7 16 87-102 32-47 (214)
496 2iut_A DNA translocase FTSK; n 41.8 12 0.00042 31.4 2.1 17 87-103 218-234 (574)
497 2gxq_A Heat resistant RNA depe 41.1 22 0.00076 23.7 3.1 16 86-101 41-56 (207)
498 1fx0_A ATP synthase alpha chai 40.7 16 0.00056 30.3 2.7 16 86-101 166-181 (507)
499 1uaa_A REP helicase, protein ( 40.4 9.7 0.00033 31.3 1.3 16 86-101 18-33 (673)
500 4ido_A Atlastin-1; GTPase, GTP 39.8 32 0.0011 28.1 4.3 18 87-104 71-88 (457)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.90 E-value=7.5e-10 Score=90.57 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=35.9
Q ss_pred ceeecchhHHHHHHHHhcCCC--CCc-ceEecCCCcHHHHHHhhhc
Q 046733 63 FAYGRDGDRNKIINRLSALND--VDT-VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 63 ~vvGrd~~~~~lv~~L~~~~~--~~~-~IvGmGGiGKTTLA~~Vy~ 105 (106)
..+||++++++|.++|..... ..+ +|+||||+||||||+.||+
T Consensus 129 ~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 129 TCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 336999999999999975422 234 9999999999999999994
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.74 E-value=5.9e-09 Score=88.95 Aligned_cols=44 Identities=25% Similarity=0.202 Sum_probs=37.5
Q ss_pred CceeecchhHHHHHHHHhcCCC-CCc-ceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSALND-VDT-VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~-~~~-~IvGmGGiGKTTLA~~Vy~ 105 (106)
..+|||+++.++|.++|..... .++ +|+||||+||||||+.+|+
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~ 169 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVR 169 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTC
T ss_pred ceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 5799999999999999975433 244 9999999999999999886
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.60 E-value=2.9e-08 Score=80.44 Aligned_cols=44 Identities=27% Similarity=0.227 Sum_probs=36.9
Q ss_pred CceeecchhHHHHHHHHhcCCC-CCc-ceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSALND-VDT-VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~-~~~-~IvGmGGiGKTTLA~~Vy~ 105 (106)
..+|||+.+.+.|.++|..... .++ .|+||||+||||||..+|+
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 5799999999999999975322 244 9999999999999998875
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.45 E-value=8.2e-08 Score=86.74 Aligned_cols=43 Identities=23% Similarity=0.232 Sum_probs=36.9
Q ss_pred ceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhhc
Q 046733 63 FAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 63 ~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy~ 105 (106)
..|||+.+.++|.++|...+..++ +|+||||+||||||+.+|+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHH
Confidence 359999999999999986444455 9999999999999999984
No 5
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.14 E-value=1.7e-06 Score=58.26 Aligned_cols=43 Identities=23% Similarity=0.398 Sum_probs=35.4
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
..++|+++..+.+.+++.......+-|+|..|+|||+||+.+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHH
Confidence 4689999999999998866433334889999999999999865
No 6
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.00 E-value=3.4e-06 Score=57.06 Aligned_cols=43 Identities=23% Similarity=0.386 Sum_probs=35.2
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|+++..+.+.+.+.......+-|+|..|+||||||+.+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHH
Confidence 4689999999999998866433334888999999999999764
No 7
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.93 E-value=8.1e-06 Score=56.48 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=35.5
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|++..++.|..++........ -|+|..|+||||||+.+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4699999999999998876543333 889999999999999875
No 8
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.88 E-value=1.2e-05 Score=55.17 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=35.5
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|+++.++.+.+++.......+-|+|..|+|||+||+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 4689999999999998876533345889999999999999865
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.83 E-value=1e-05 Score=60.76 Aligned_cols=43 Identities=26% Similarity=0.279 Sum_probs=34.7
Q ss_pred CceeecchhHHHHHHHHhc---CCCC-CcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSA---LNDV-DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~---~~~~-~~~IvGmGGiGKTTLA~~Vy 104 (106)
..++||+++.+.|.++|.. .... .+-|+|+.|+|||||++.++
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~ 66 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVL 66 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 4799999999999988764 2222 34899999999999999875
No 10
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.81 E-value=1.6e-05 Score=59.03 Aligned_cols=40 Identities=18% Similarity=0.374 Sum_probs=34.2
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy 104 (106)
..++||+++.+.|.+++... .+ .|+|+.|+|||||++.+.
T Consensus 12 ~~~~gR~~el~~L~~~l~~~---~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY---PLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC---SEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC---CeEEEECCCcCCHHHHHHHHH
Confidence 57999999999999988653 34 899999999999999865
No 11
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.73 E-value=1.5e-05 Score=60.91 Aligned_cols=43 Identities=16% Similarity=0.090 Sum_probs=33.5
Q ss_pred CceeecchhHHHHHHHH-hc---C--CCCC-cce--EecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRL-SA---L--NDVD-TVI--VGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L-~~---~--~~~~-~~I--vGmGGiGKTTLA~~Vy 104 (106)
..++||+++.+.|.++| .. . .... +-| +|++|+|||||++.++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~ 73 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTV 73 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHH
Confidence 47999999999999888 42 2 1222 355 8999999999999876
No 12
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.68 E-value=2.7e-05 Score=57.75 Aligned_cols=39 Identities=26% Similarity=0.282 Sum_probs=32.3
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
..++||+++.+.|.+ +.. ..+.|+|+.|+|||||++.+.
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~ 51 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGI 51 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHH
Confidence 578999999999998 644 223899999999999998764
No 13
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.68 E-value=3.3e-05 Score=58.56 Aligned_cols=44 Identities=20% Similarity=0.132 Sum_probs=34.6
Q ss_pred CceeecchhHHHHHHHHhc---CCCC-CcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSA---LNDV-DTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~---~~~~-~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
..++||+++.+.+.++|.. .... .+-|+|++|+||||||+.++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999887753 2222 238899999999999998763
No 14
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.57 E-value=3.9e-05 Score=57.66 Aligned_cols=43 Identities=16% Similarity=0.333 Sum_probs=34.5
Q ss_pred CceeecchhHHHHHHHHhcC---CCC-CcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSAL---NDV-DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~---~~~-~~~IvGmGGiGKTTLA~~Vy 104 (106)
..++||+++.+.+..+|... ... .+-|+|..|+||||||+.++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~ 65 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVL 65 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHH
Confidence 47999999999999988432 122 34888999999999999875
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.52 E-value=8.8e-05 Score=54.67 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=35.4
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|+++.++.|.+++.......+-|+|..|+||||+|+.+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~ 63 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLA 63 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHH
Confidence 4689999999999998876543336889999999999999764
No 16
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.49 E-value=6.9e-05 Score=56.61 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=34.6
Q ss_pred CceeecchhHHHHHHHHhc---CCCCC---cceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSA---LNDVD---TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~---~~~~~---~~IvGmGGiGKTTLA~~Vy 104 (106)
..++||+++.+.|.++|.. ..... +-|+|..|+|||||++.+.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~ 65 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLW 65 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 4799999999999888854 22223 4889999999999999875
No 17
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.47 E-value=7.1e-05 Score=60.42 Aligned_cols=43 Identities=23% Similarity=0.404 Sum_probs=36.2
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
..+||+++.++.++..|......++-++|..|+|||+||+.+.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la 222 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLA 222 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHH
Confidence 3599999999999999876544455788999999999999864
No 18
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.46 E-value=9e-05 Score=54.71 Aligned_cols=43 Identities=12% Similarity=0.097 Sum_probs=35.4
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|+++.++.|.+++.......+-++|..|+||||+|+.+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~ 67 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALA 67 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHH
Confidence 4699999999999988876543335888999999999999875
No 19
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.38 E-value=0.00012 Score=49.63 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=32.9
Q ss_pred ceeecchhHHHHHHHHhcC--CCCCcceEecCCCcHHHHHHhhhc
Q 046733 63 FAYGRDGDRNKIINRLSAL--NDVDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 63 ~vvGrd~~~~~lv~~L~~~--~~~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+++|+......+.+.+..- ....+-|+|..|.|||+||+.+++
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHH
Confidence 5789999999998877542 223458899999999999999874
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.31 E-value=0.00014 Score=53.44 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=33.1
Q ss_pred CceeecchhHHHHHHHHhcC------------C-CCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSAL------------N-DVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~------------~-~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.++.|.+.+... . ...+-|+|..|+|||+||+.+.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la 72 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVA 72 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 47999999999988776321 1 1123788999999999999875
No 21
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.28 E-value=0.00022 Score=53.35 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=35.0
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|+++.++.|..++.......+-++|..|+||||||+.+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la 79 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALT 79 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4699999999999888865433335889999999999999764
No 22
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.25 E-value=0.0003 Score=47.67 Aligned_cols=44 Identities=11% Similarity=0.009 Sum_probs=31.5
Q ss_pred CceeecchhHHHHHHHHhc--CCCCCcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSA--LNDVDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~--~~~~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
-+++|++...+++.+.+.. .....+-|+|..|.|||+||+.++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHH
Confidence 4688999888888887643 2223458899999999999999864
No 23
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.22 E-value=0.00028 Score=53.18 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=34.8
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|+++.++.|.+.+........ -|+|..|+||||||+.+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la 59 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4699999999999988866543333 788999999999998763
No 24
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.21 E-value=0.00029 Score=60.56 Aligned_cols=43 Identities=23% Similarity=0.406 Sum_probs=36.3
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
..++||+++.+.++..|......++-++|..|+||||||+.+.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la 212 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLA 212 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHH
Confidence 4589999999999999876554455889999999999999764
No 25
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.18 E-value=0.00022 Score=60.22 Aligned_cols=43 Identities=23% Similarity=0.404 Sum_probs=36.6
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
..++|+++.++.++..|......++-++|..|+|||++|+.+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la 222 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLA 222 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHH
Confidence 4699999999999999977555556888999999999999764
No 26
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.16 E-value=0.00029 Score=52.34 Aligned_cols=44 Identities=23% Similarity=0.182 Sum_probs=33.6
Q ss_pred CceeecchhHHHHHHHHhc----C-CCCCcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSA----L-NDVDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~----~-~~~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
.+++|++..++.+..++.. . ....+-|+|..|+|||+||+.+.+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4699999888888777642 1 122348899999999999998753
No 27
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.14 E-value=0.0003 Score=51.68 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=33.8
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|+++.++.|.+++.......+-++|..|+|||++|+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~ 59 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALA 59 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHH
Confidence 4689999988888887755433235888999999999998764
No 28
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.10 E-value=0.0004 Score=51.39 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=30.8
Q ss_pred ceeecchhHHHHHHHHhc--------------CCCC-CcceEecCCCcHHHHHHhhh
Q 046733 63 FAYGRDGDRNKIINRLSA--------------LNDV-DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 63 ~vvGrd~~~~~lv~~L~~--------------~~~~-~~~IvGmGGiGKTTLA~~Vy 104 (106)
+++|.++.++.|.+++.. .... .+-|+|..|+|||+||+.+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHH
Confidence 699999888888766531 1111 23788999999999998654
No 29
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.09 E-value=0.0005 Score=50.41 Aligned_cols=43 Identities=14% Similarity=0.336 Sum_probs=33.1
Q ss_pred CceeecchhHHHHHHHHhc--------------CCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSA--------------LNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~--------------~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
..++|.++.++.|...+.. .....+-++|..|+|||+||+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la 71 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLA 71 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHH
Confidence 4799999999888877643 112234788999999999999874
No 30
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.08 E-value=0.00036 Score=58.69 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=35.9
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
..++|++++.+.+++.|......++-++|..|+|||+||+.+.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la 228 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHH
Confidence 4689999999999998876544445888999999999999764
No 31
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.01 E-value=0.00069 Score=50.05 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=32.5
Q ss_pred CceeecchhHHHHHHHHhcC------------CCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSAL------------NDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~------------~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.++.|.+++... ....+-|+|..|+||||||+.+.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la 75 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVA 75 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHH
Confidence 46999999888888776321 11123788999999999999875
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.00 E-value=0.00064 Score=51.12 Aligned_cols=43 Identities=21% Similarity=0.195 Sum_probs=33.7
Q ss_pred CceeecchhHHHHHHHHhcC---C--CCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSAL---N--DVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~---~--~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|++..++.+..++... . ...+-|+|..|+|||+||+.+.
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHH
Confidence 46999999999888887532 1 1234788999999999999874
No 33
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.99 E-value=0.00059 Score=49.10 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=30.2
Q ss_pred CceeecchhHHHHHHHH---hcCCC-------C--CcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRL---SALND-------V--DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L---~~~~~-------~--~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.++.|.+++ ..... . .+-|+|..|+|||+||+.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la 60 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA 60 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHH
Confidence 46899998777775554 22211 1 12678999999999999875
No 34
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.93 E-value=0.00055 Score=51.59 Aligned_cols=43 Identities=12% Similarity=0.023 Sum_probs=32.1
Q ss_pred CceeecchhHHHHHHHH-hcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRL-SALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L-~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.++.+.+++ .......+-|+|..|+|||||++.+.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la 57 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALL 57 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 46889988888777766 33222235889999999999999763
No 35
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.87 E-value=0.0013 Score=47.93 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=31.2
Q ss_pred CceeecchhHHHHHHHHhc---C--------C-CCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSA---L--------N-DVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~---~--------~-~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.++.|.+.+.. . . ...+-|+|..|+|||+||+.+.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la 65 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVA 65 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHH
Confidence 4689999888887765531 0 1 1123788999999999999875
No 36
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.84 E-value=0.00081 Score=49.11 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=31.1
Q ss_pred CceeecchhHHHHHHHHhcC--CCCCcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSAL--NDVDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~--~~~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
..++|.+.....+.+.+... ....+-|+|..|+|||+||+.++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 35889998888888776532 222348889999999999998864
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.83 E-value=0.0012 Score=49.94 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=30.9
Q ss_pred CceeecchhHHHH---HHHHhcCCCC--CcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKI---INRLSALNDV--DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~l---v~~L~~~~~~--~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|++..++.+ ...+...... .+-|+|..|+|||+||+.+.
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la 91 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMA 91 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4799999877664 4444433322 24888999999999999874
No 38
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.82 E-value=0.00079 Score=48.97 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=30.2
Q ss_pred CceeecchhHHHHHHHH---hcCC---------CCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRL---SALN---------DVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L---~~~~---------~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.++.|.+++ .... ...+-|+|..|.||||||+.+.
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la 66 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIA 66 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHH
Confidence 46899987777765543 2211 0123788999999999999875
No 39
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.82 E-value=0.00085 Score=50.58 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=32.1
Q ss_pred CceeecchhHHHHHHHHhcC------------CCC-CcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSAL------------NDV-DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~------------~~~-~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.++.|.+++... ... .+-|+|..|.|||+||+.+.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala 70 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 70 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHH
Confidence 46899998888887766421 111 23788999999999999875
No 40
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.79 E-value=0.0009 Score=54.39 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=33.7
Q ss_pred CceeecchhHHHHHHHHhcCC----------------CCC-cceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALN----------------DVD-TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~----------------~~~-~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|+++.++.|.++|.... ..+ +-|+|..|+||||||+.+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la 98 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVA 98 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999986410 112 2788999999999999874
No 41
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.79 E-value=0.0012 Score=46.17 Aligned_cols=42 Identities=10% Similarity=-0.084 Sum_probs=25.2
Q ss_pred ceeecc---hhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 63 FAYGRD---GDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 63 ~vvGrd---~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
+++|.+ ...+.+..++.......+-|+|..|+||||||+.+.
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~ 73 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAAC 73 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 455532 333444444433222234889999999999999874
No 42
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.76 E-value=0.00091 Score=51.76 Aligned_cols=43 Identities=19% Similarity=0.144 Sum_probs=32.3
Q ss_pred CceeecchhHHHHHHHHhc----CC--------CCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSA----LN--------DVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~----~~--------~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.++.|.+.+.. .. ...+-|+|..|+|||+||+.+.
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHH
Confidence 4689999988888877632 11 1123788999999999999875
No 43
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.67 E-value=0.0012 Score=50.09 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=32.3
Q ss_pred CceeecchhHHHHHHHHhc---------CCC---CCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSA---------LND---VDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~---------~~~---~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.++.|.+.+.. ... ..+-++|..|+|||+||+.+.
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia 72 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVA 72 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 4799999999988877621 011 123788999999999999875
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.61 E-value=0.0012 Score=53.45 Aligned_cols=43 Identities=16% Similarity=0.087 Sum_probs=32.1
Q ss_pred CceeecchhH---HHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDR---NKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~---~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.+ ..|...+.......+-++|..|+||||||+.+.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia 71 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIA 71 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHH
Confidence 4688888766 556666655444345888999999999999875
No 45
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.58 E-value=0.0023 Score=45.33 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=26.7
Q ss_pred cchhHHHHHHHHhcCCCC--Cc-ceEecCCCcHHHHHHhhh
Q 046733 67 RDGDRNKIINRLSALNDV--DT-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 67 rd~~~~~lv~~L~~~~~~--~~-~IvGmGGiGKTTLA~~Vy 104 (106)
|++..+.|++.+...... .+ .|+|..|.|||||++.+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLS 43 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHH
Confidence 344566777777653222 23 999999999999998753
No 46
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.58 E-value=0.0021 Score=48.78 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=32.5
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.+.-++.|...+.......+-++|..|+||||+|+.+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la 67 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALA 67 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHH
Confidence 3578888777777777765433235888999999999999763
No 47
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.56 E-value=0.002 Score=48.20 Aligned_cols=43 Identities=16% Similarity=-0.031 Sum_probs=33.5
Q ss_pred CceeecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.++.|.+++......+. -+.|..|+|||++|+.+.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la 69 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALC 69 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHH
Confidence 4699999999999988875443333 445779999999999864
No 48
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.51 E-value=0.0025 Score=49.53 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=32.5
Q ss_pred CceeecchhHHHHHHHHhc----CC--------CCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSA----LN--------DVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~----~~--------~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.+..++.|.+++.. .. ...+-|+|..|+|||+||+.+.
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia 169 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVA 169 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHH
Confidence 4699999999988887632 11 1123788999999999999874
No 49
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.49 E-value=0.0014 Score=49.29 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=33.0
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
..++|+++.++.+...+... ..+-++|..|+|||+||+.+.
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la 67 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLA 67 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHH
Confidence 57899998888887777653 234889999999999999864
No 50
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.47 E-value=0.0024 Score=49.50 Aligned_cols=43 Identities=19% Similarity=0.243 Sum_probs=32.2
Q ss_pred CceeecchhHHHHHHHHhcC---------C---CCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSAL---------N---DVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~---------~---~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.++.|.+.+... . ...+-++|..|+|||+||+.+.
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala 105 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVA 105 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHH
Confidence 46999999888888766310 0 1123788999999999999875
No 51
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.45 E-value=0.002 Score=49.07 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=34.2
Q ss_pred CceeecchhHHHHHHHHhcCC--CCCcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSALN--DVDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~--~~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
..++|.......+.+.+..-. ...+-|+|..|+|||++|+.++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 468999999999888875422 22448889999999999998864
No 52
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.44 E-value=0.0023 Score=49.00 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=31.5
Q ss_pred CceeecchhHHHHHHHHhc---CC-------C--CCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSA---LN-------D--VDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~---~~-------~--~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.++.|.+.+.. .. . ..+-++|..|+|||+||+.+.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala 66 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVA 66 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHH
Confidence 4789999888888776531 10 0 123678999999999999875
No 53
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.43 E-value=0.0017 Score=46.12 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=22.7
Q ss_pred HHHHHHHHhcC-CCCCc-ceEecCCCcHHHHHHhhh
Q 046733 71 RNKIINRLSAL-NDVDT-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 71 ~~~lv~~L~~~-~~~~~-~IvGmGGiGKTTLA~~Vy 104 (106)
.+.|++.+... ....+ .|+|..|.|||||++.+.
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34455554432 11223 999999999999999764
No 54
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.36 E-value=0.0013 Score=49.17 Aligned_cols=43 Identities=12% Similarity=0.116 Sum_probs=29.7
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.+.-++.+...+.......+-|+|..|+|||+||+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la 66 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALA 66 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHH
Confidence 3689988765554433332222235788999999999999875
No 55
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.30 E-value=0.0013 Score=45.29 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 42 ~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 42 TFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp EECCSSSSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 889999999999999875
No 56
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.29 E-value=0.0027 Score=48.56 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=28.9
Q ss_pred CceeecchhHHHHHHHHhcC----CC-CCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSAL----ND-VDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~----~~-~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.+..++.+-..+... .. ..+-++|..|+||||||+.+.
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia 72 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIA 72 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 35778776666654444321 11 234899999999999999874
No 57
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.29 E-value=0.0041 Score=47.85 Aligned_cols=43 Identities=14% Similarity=0.350 Sum_probs=31.5
Q ss_pred CceeecchhHHHHHHHHh----c--------------------------CCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLS----A--------------------------LNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~----~--------------------------~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
..++|.++.++.|...+. . .....+-++|..|+|||+||+.+.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la 93 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLA 93 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHH
Confidence 468999988888876652 0 011234788999999999999874
No 58
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.25 E-value=0.0018 Score=45.23 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=17.6
Q ss_pred cceEecCCCcHHHHHHhhhc
Q 046733 86 TVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+-|+|..|+|||+||+.++.
T Consensus 57 ~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 57 LYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 38899999999999998763
No 59
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.24 E-value=0.0016 Score=48.03 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=32.3
Q ss_pred CceeecchhHHHHHHHHhcCC-----C---C-CcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALN-----D---V-DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~-----~---~-~~~IvGmGGiGKTTLA~~Vy 104 (106)
..++|.+..++.|...+.... . . .+-++|..|+|||+||+.+.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la 68 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLA 68 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHH
Confidence 468899988888877765321 1 1 23788999999999999864
No 60
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.002 Score=50.38 Aligned_cols=42 Identities=10% Similarity=0.022 Sum_probs=33.2
Q ss_pred ceeecchhHHHHHHHHhc---CCC-CCcceEecCCCcHHHHHHhhh
Q 046733 63 FAYGRDGDRNKIINRLSA---LND-VDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 63 ~vvGrd~~~~~lv~~L~~---~~~-~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+.||+++.+.|...|.. ... ..+-|.|..|.|||++++.|.
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~ 66 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVM 66 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 488999999999877743 222 234788999999999999875
No 61
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.16 E-value=0.0041 Score=49.73 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=32.0
Q ss_pred CceeecchhHHHHHHHHhc----CC--------CCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSA----LN--------DVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~----~~--------~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.++.|.+.+.. .. ...+-++|..|+|||+||+.+.
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia 188 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVA 188 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHH
Confidence 4689999988888877631 11 1123788999999999999875
No 62
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.13 E-value=0.006 Score=44.67 Aligned_cols=43 Identities=9% Similarity=0.080 Sum_probs=29.0
Q ss_pred CceeecchhHHHHHHH-------HhcCCCC---CcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINR-------LSALNDV---DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~-------L~~~~~~---~~~IvGmGGiGKTTLA~~Vy 104 (106)
..++|.....+.++.. +...... .+-|+|..|+|||+||+.+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia 85 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIA 85 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHH
Confidence 4577887776666652 2211111 23788999999999999875
No 63
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.13 E-value=0.0023 Score=45.09 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=16.3
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+.|+|+.|.||||+|+.+
T Consensus 28 i~l~G~~GsGKsTl~~~L 45 (199)
T 3vaa_A 28 IFLTGYMGAGKTTLGKAF 45 (199)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 389999999999999976
No 64
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.01 E-value=0.0062 Score=46.71 Aligned_cols=42 Identities=12% Similarity=0.355 Sum_probs=31.3
Q ss_pred ceeecchhHHHHHHHHhc-------------C--CCCCcceEecCCCcHHHHHHhhh
Q 046733 63 FAYGRDGDRNKIINRLSA-------------L--NDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 63 ~vvGrd~~~~~lv~~L~~-------------~--~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.++|.+..++.|...+.. . ....+-++|..|+|||++|+.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia 72 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 72 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHH
Confidence 589999888888776620 0 01123788999999999999875
No 65
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.94 E-value=0.0045 Score=51.00 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=33.0
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
..++|.++.++.+...+.... .+-++|..|+|||+||+.+..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHH
Confidence 578999988888777665432 347889999999999998753
No 66
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.91 E-value=0.0033 Score=44.26 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=15.9
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|+.|.|||||++.+
T Consensus 29 ~l~G~sGsGKSTl~~~L 45 (200)
T 3uie_A 29 WVTGLSGSGKSTLACAL 45 (200)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 89999999999999975
No 67
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.90 E-value=0.0034 Score=43.98 Aligned_cols=17 Identities=41% Similarity=0.667 Sum_probs=15.9
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|+.|.||||||+.+
T Consensus 22 ~l~G~~GsGKSTla~~L 38 (202)
T 3t61_A 22 VVMGVSGSGKSSVGEAI 38 (202)
T ss_dssp EEECSTTSCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 88999999999999976
No 68
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.84 E-value=0.0098 Score=47.46 Aligned_cols=43 Identities=16% Similarity=0.136 Sum_probs=30.5
Q ss_pred CceeecchhHHHHHHH---HhcCCCC--CcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINR---LSALNDV--DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~---L~~~~~~--~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.++.+..+ +...... .+-++|..|.|||+||+.+-
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala 84 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIA 84 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHH
Confidence 4799999887765443 3332221 24788999999999999764
No 69
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.78 E-value=0.0045 Score=53.36 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=32.5
Q ss_pred CceeecchhHHHHHHHHhc---CC---------C-CCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSA---LN---------D-VDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~---~~---------~-~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.++.|.+++.. .. . ..+-|+|..|+||||||+.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala 259 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHH
Confidence 4699999999988887642 10 1 123788999999999999874
No 70
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.76 E-value=0.0041 Score=43.75 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|+.|.|||||++.+.
T Consensus 33 ~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 33 VVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp EEECCTTSCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 899999999999999763
No 71
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.57 E-value=0.0054 Score=42.35 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=16.1
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+.|+|+.|.||||+++.+
T Consensus 16 i~l~G~~GsGKsT~~~~L 33 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRL 33 (186)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 478999999999999976
No 72
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.56 E-value=0.009 Score=48.86 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=32.7
Q ss_pred CceeecchhHHHHHHHHhcC-------------CCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSAL-------------NDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~-------------~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.+..++.|.+++... ....+-|+|..|+|||+||+.+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia 259 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHH
Confidence 36899999898888776421 11234788999999999999875
No 73
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.55 E-value=0.0054 Score=44.49 Aligned_cols=18 Identities=44% Similarity=0.508 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|+.|.|||||++.+.
T Consensus 31 ~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 31 VILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999864
No 74
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.50 E-value=0.0065 Score=42.66 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.||||||+.+-
T Consensus 25 ~i~G~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 25 GISGVTNSGKTTLAKNLQ 42 (207)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 899999999999999863
No 75
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.50 E-value=0.011 Score=41.59 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=15.9
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+.|+|.+|+|||||+..+
T Consensus 41 i~ivG~~gvGKTtl~~~l 58 (226)
T 2hf9_A 41 FDFMGAIGSGKTLLIEKL 58 (226)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 389999999999999865
No 76
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.49 E-value=0.0055 Score=45.99 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=17.5
Q ss_pred cceEecCCCcHHHHHHhhhc
Q 046733 86 TVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+-|+|..|+||||||+.+.+
T Consensus 40 lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 40 IFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 48899999999999998753
No 77
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.40 E-value=0.011 Score=48.29 Aligned_cols=42 Identities=14% Similarity=0.329 Sum_probs=30.9
Q ss_pred CceeecchhHHHHHHHHhcC--------------CCCCcceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSAL--------------NDVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~--------------~~~~~~IvGmGGiGKTTLA~~V 103 (106)
..|+|.++.++.|...+... ...++-++|+.|+||||||+.+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~l 70 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRL 70 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHH
Confidence 47999998888886655221 0113478899999999999975
No 78
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.35 E-value=0.0071 Score=42.26 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=15.7
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|+.|.||||+|+.+
T Consensus 24 ~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 24 LLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 78899999999999975
No 79
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.34 E-value=0.0068 Score=43.84 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=28.9
Q ss_pred CceeecchhHHHHHHHHhc--CC-------C---CCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSA--LN-------D---VDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~--~~-------~---~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.+..+.+.... .. . ..+-|+|..|.|||||++.+.
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~ 70 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 70 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 4688888666666544321 10 0 113789999999999999875
No 80
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.32 E-value=0.0097 Score=41.65 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=23.5
Q ss_pred cchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733 67 RDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 67 rd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V 103 (106)
.++..+.+.+++.......+.|+|.+|+|||||+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l 50 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERT 50 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHH
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHH
Confidence 3444555555443222212389999999999998765
No 81
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.31 E-value=0.013 Score=48.12 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=30.6
Q ss_pred CceeecchhHHHHHHHHh---cCC-----C----CCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLS---ALN-----D----VDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~---~~~-----~----~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.++.+.+.+. ... . ..+-|+|..|.|||+||+.+.
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia 70 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVA 70 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 469999987777766542 211 0 123688999999999999875
No 82
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.28 E-value=0.0076 Score=42.68 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 24 ~l~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 24 VLSGPSAVGKSTVVRCLR 41 (207)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999763
No 83
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.25 E-value=0.0088 Score=41.82 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 29 ~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 29 EVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999763
No 84
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.25 E-value=0.018 Score=43.98 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.||||||+.+.
T Consensus 35 ~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 35 FFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999764
No 85
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.17 E-value=0.0061 Score=41.90 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=17.2
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
.|+|..|.|||||++.+..
T Consensus 40 ~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 40 YVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EEESSSTTTTCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 8999999999999998753
No 86
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.14 E-value=0.0089 Score=42.31 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 34 ~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 34 LLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHH
Confidence 999999999999999764
No 87
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.14 E-value=0.0091 Score=44.97 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=16.2
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
-++|..|+|||+||+.+.
T Consensus 40 Ll~GppGtGKT~la~aiA 57 (293)
T 3t15_A 40 GIWGGKGQGKSFQCELVF 57 (293)
T ss_dssp EEEECTTSCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 577999999999999875
No 88
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.05 E-value=0.01 Score=43.33 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=15.8
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|.|+.|.||||+|+.+
T Consensus 26 ~I~G~~GSGKST~a~~L 42 (252)
T 1uj2_A 26 GVSGGTASGKSSVCAKI 42 (252)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 88999999999999975
No 89
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.03 E-value=0.0098 Score=42.85 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 27 ~lvGpsGsGKSTLl~~L~ 44 (218)
T 1z6g_A 27 VICGPSGVGKGTLIKKLL 44 (218)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999763
No 90
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.01 E-value=0.0099 Score=43.76 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|+.|.|||||++.+-
T Consensus 31 ~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 31 TVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999764
No 91
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.98 E-value=0.011 Score=41.19 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=16.1
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|.|+.|.||||+|+.+.
T Consensus 19 ~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 19 FVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 888999999999998763
No 92
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.98 E-value=0.0099 Score=43.81 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=29.7
Q ss_pred CceeecchhHHHHHHHHhc--C-------CC---CCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSA--L-------ND---VDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~--~-------~~---~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.++++.++... . +. ..+-|+|..|.|||||++.+.
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~ 94 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 94 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHH
Confidence 4688988777666554321 1 00 123789999999999999875
No 93
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.94 E-value=0.019 Score=47.27 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=30.5
Q ss_pred CceeecchhHHHHHHHH---hcCC---C------CCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRL---SALN---D------VDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L---~~~~---~------~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++.+..+.+.+ .... . ..+-|+|..|.||||||+++.
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa 85 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 85 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHH
Confidence 57999997777776554 2211 0 013789999999999999875
No 94
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.89 E-value=0.011 Score=42.42 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=15.3
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.+.|.||+|||||+..+
T Consensus 18 ~~~GkgGvGKTTl~~~L 34 (262)
T 1yrb_A 18 VFVGTAGSGKTTLTGEF 34 (262)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHH
Confidence 68899999999999875
No 95
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.86 E-value=0.011 Score=47.36 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=17.6
Q ss_pred cceEecCCCcHHHHHHhhhc
Q 046733 86 TVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+-|+|..|+||||||+.+.+
T Consensus 133 lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 133 LFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 48899999999999998764
No 96
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.85 E-value=0.019 Score=47.51 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=30.5
Q ss_pred CceeecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.+.-++.+...+... ..+-|+|..|+||||||+.+.
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia 81 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMA 81 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHh
Confidence 35889887776665555433 234999999999999999874
No 97
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.84 E-value=0.011 Score=44.28 Aligned_cols=43 Identities=16% Similarity=0.124 Sum_probs=29.0
Q ss_pred CceeecchhHHHHHHHHhc---C-------CC---CCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSA---L-------ND---VDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~---~-------~~---~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.++.|.++.++.|.+.+.. . +. ..+-++|..|.||||||+.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala 65 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVA 65 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 4688888878777665421 1 00 123789999999999999874
No 98
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.84 E-value=0.012 Score=42.81 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=16.0
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|.|..|.|||||++.+
T Consensus 29 gI~G~~GsGKSTl~k~L 45 (245)
T 2jeo_A 29 GVSGGTASGKSTVCEKI 45 (245)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 99999999999999976
No 99
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.80 E-value=0.013 Score=41.54 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=16.3
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|+.|.||||+++.+.
T Consensus 29 ~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 29 WLTGLSASGKSTLAVELE 46 (211)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 889999999999999763
No 100
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.79 E-value=0.014 Score=39.92 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=17.4
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
.|+|..|.|||||..+++.
T Consensus 30 ~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 30 AIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEECTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 8999999999999998864
No 101
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.79 E-value=0.024 Score=45.40 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=25.7
Q ss_pred ecchhHHHHHHHHhcC---CCC-CcceEecCCCcHHHHHHhhh
Q 046733 66 GRDGDRNKIINRLSAL---NDV-DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 66 Grd~~~~~lv~~L~~~---~~~-~~~IvGmGGiGKTTLA~~Vy 104 (106)
..+.-++++++.|... ... .+.|+|+.|.|||||++.+.
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHH
Confidence 3445566666666321 111 23889999999999998753
No 102
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.72 E-value=0.013 Score=45.22 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 94 gI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 94 GVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp EEECCTTSCHHHHHHHHH
T ss_pred EEECCCCchHHHHHHHHH
Confidence 999999999999999864
No 103
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.70 E-value=0.014 Score=40.58 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=15.8
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|.+|.|||||+..+
T Consensus 24 ~i~G~~GsGKTtl~~~l 40 (220)
T 2cvh_A 24 QVYGPYASGKTTLALQT 40 (220)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 89999999999999875
No 104
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.68 E-value=0.012 Score=44.54 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=16.0
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
-|.|+.|.||||||+.+.
T Consensus 37 vl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 37 LLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp EEECCTTSCTHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 778999999999999863
No 105
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.64 E-value=0.014 Score=43.76 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=16.5
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+.|+|+.|.||||+++.+
T Consensus 51 i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 51 MYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp EEEECSTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 489999999999999976
No 106
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.55 E-value=0.017 Score=42.19 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 34 ~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 34 SIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEEECTTSCHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999764
No 107
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.52 E-value=0.016 Score=42.72 Aligned_cols=18 Identities=33% Similarity=0.379 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 35 ~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 35 SIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp EEECSTTSSHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 999999999999999764
No 108
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.50 E-value=0.017 Score=40.15 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=16.2
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 27 ~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 27 ALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHH
Confidence 899999999999998753
No 109
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.49 E-value=0.01 Score=43.55 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=15.7
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|+|+.|.||||+|+.+
T Consensus 36 ~l~G~~GsGKSTla~~L 52 (253)
T 2p5t_B 36 LLGGQSGAGKTTIHRIK 52 (253)
T ss_dssp EEESCGGGTTHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 78899999999999975
No 110
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.41 E-value=0.022 Score=48.03 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=32.8
Q ss_pred CceeecchhHHHHHHHHhcCCC--C-------CcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALND--V-------DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~--~-------~~~IvGmGGiGKTTLA~~Vy 104 (106)
..++|.+..++.|...+..... . .+-++|..|+|||+||+.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala 542 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA 542 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 4699999989888887753221 1 13678999999999999875
No 111
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.39 E-value=0.018 Score=41.45 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=16.2
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+.|.|+.|.||||+|+.+
T Consensus 19 I~l~G~~GsGKsT~a~~L 36 (233)
T 1ak2_A 19 AVLLGPPGAGKGTQAPKL 36 (233)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 388899999999999976
No 112
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.33 E-value=0.023 Score=41.23 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 26 ~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 26 FGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp EEECCTTSSTTHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 113
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.32 E-value=0.02 Score=43.49 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 84 gI~G~~GsGKSTl~~~L~ 101 (308)
T 1sq5_A 84 SIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp EEEECTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999763
No 114
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.25 E-value=0.016 Score=48.41 Aligned_cols=44 Identities=18% Similarity=0.118 Sum_probs=30.5
Q ss_pred CceeecchhHHHHHHHHhcCCC-----------CCcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSALND-----------VDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~-----------~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+.++|.++-++.|.-.|..... .++-++|..|+|||+||+.+..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSST
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHH
Confidence 5688988766666544443310 0347889999999999998753
No 115
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.23 E-value=0.019 Score=44.13 Aligned_cols=18 Identities=28% Similarity=0.619 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|.+|.|||||++.+.
T Consensus 106 ~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 106 LVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHH
Confidence 899999999999998763
No 116
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.23 E-value=0.021 Score=41.75 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 20 ~l~GpsGsGKSTLlk~L~ 37 (219)
T 1s96_A 20 IVSAPSGAGKSSLIQALL 37 (219)
T ss_dssp EEECCTTSCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999764
No 117
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.21 E-value=0.012 Score=42.15 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=12.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 31 ~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 31 VLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEECSCC----CHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 899999999999999875
No 118
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.20 E-value=0.02 Score=42.17 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 35 ~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 35 AVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp EEECSTTSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 119
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.19 E-value=0.021 Score=40.24 Aligned_cols=17 Identities=18% Similarity=0.213 Sum_probs=15.8
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|.|||||+..+
T Consensus 28 ~i~G~~GsGKTtl~~~l 44 (243)
T 1n0w_A 28 EMFGEFRTGKTQICHTL 44 (243)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHH
Confidence 89999999999999875
No 120
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.16 E-value=0.042 Score=37.22 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=21.5
Q ss_pred HHHHHHhcCCCCCcceEecCCCcHHHHHHhhh
Q 046733 73 KIINRLSALNDVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 73 ~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
++.+ +......++.|+|..|+|||||...+.
T Consensus 7 ~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 7 RIWR-LFNHQEHKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp HHHH-HHTTSCEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHH-hcCCCccEEEEECCCCCCHHHHHHHHh
Confidence 4444 333222245999999999999998764
No 121
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.14 E-value=0.021 Score=42.76 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 36 ~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 36 SIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp EEECCTTSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 122
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.12 E-value=0.021 Score=42.44 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 37 LIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp EEECSTTSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 123
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.11 E-value=0.022 Score=41.99 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 36 ~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 36 TLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EEECSTTSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 124
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.09 E-value=0.022 Score=42.28 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 28 ~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 28 VLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 125
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.08 E-value=0.023 Score=42.13 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 33 ~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 33 ALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999875
No 126
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.08 E-value=0.022 Score=42.89 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 41 ~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 41 AIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp EEECCTTSCHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 999999999999999864
No 127
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.08 E-value=0.026 Score=39.04 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=16.3
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|+|||||.+.+.
T Consensus 33 ~lvG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 33 VLIGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EEEECTTSSHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHh
Confidence 899999999999998753
No 128
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.05 E-value=0.023 Score=41.89 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 32 ~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 32 AFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp EEECCTTSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 129
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.03 E-value=0.024 Score=43.23 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=15.6
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|.+|.||||++..+
T Consensus 109 ~lvG~~GsGKTTl~~~L 125 (296)
T 2px0_A 109 VLFGSTGAGKTTTLAKL 125 (296)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 89999999999999875
No 130
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.02 E-value=0.022 Score=43.20 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 38 ~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 38 AILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp EEECCTTSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999864
No 131
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.02 E-value=0.025 Score=39.48 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~L~G~nGaGKTTLlr~l~ 54 (158)
T 1htw_A 37 YLNGDLGAGKTTLTRGML 54 (158)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999864
No 132
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.00 E-value=0.024 Score=41.47 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=16.2
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+.|.|+.|+||||+|+.+
T Consensus 32 I~l~G~~GsGKsT~a~~L 49 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNL 49 (243)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 388899999999999976
No 133
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.00 E-value=0.027 Score=37.64 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=17.1
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
++.|+|..|+|||||...+.
T Consensus 20 ~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 44999999999999998754
No 134
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.99 E-value=0.024 Score=41.49 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 38 ~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 38 AVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp EEECCTTSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 135
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.99 E-value=0.048 Score=37.83 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=17.2
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
++.|+|..|+|||||...+.
T Consensus 27 ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 34999999999999998764
No 136
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.97 E-value=0.026 Score=42.36 Aligned_cols=17 Identities=35% Similarity=0.519 Sum_probs=15.7
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|.|+.|.||||+|+.+
T Consensus 79 ~I~G~~GSGKSTva~~L 95 (281)
T 2f6r_A 79 GLTGISGSGKSSVAQRL 95 (281)
T ss_dssp EEEECTTSCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 88999999999999875
No 137
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.97 E-value=0.021 Score=44.06 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=16.0
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|.|||||++.+
T Consensus 174 ~IvG~nGsGKSTLlk~L 190 (365)
T 1lw7_A 174 AILGGESSGKSVLVNKL 190 (365)
T ss_dssp EEECCTTSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 89999999999999975
No 138
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.95 E-value=0.022 Score=41.00 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|.|..|.|||||++.+.
T Consensus 24 ~i~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 24 LIEGNIGSGKTTYLNHFE 41 (230)
T ss_dssp EEECSTTSCHHHHHHTTG
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 899999999999999864
No 139
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.94 E-value=0.024 Score=42.68 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 49 ~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 49 ALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp EEECSTTSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999874
No 140
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.94 E-value=0.025 Score=42.44 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 50 ~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 50 AIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999875
No 141
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.93 E-value=0.025 Score=41.41 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 39 ~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 39 NFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp EEECCTTSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 142
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.93 E-value=0.024 Score=42.02 Aligned_cols=18 Identities=44% Similarity=0.409 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 39 ~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 39 GIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp EEECSTTSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 143
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.89 E-value=0.04 Score=44.84 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=31.0
Q ss_pred CceeecchhHHHHHHHHh----cCC---------CCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLS----ALN---------DVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~----~~~---------~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+|.|.++.++.|.+.+. .+. ...+-++|..|.|||.||++|-
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA 236 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACA 236 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHH
Confidence 468899998888876542 211 0123677999999999999873
No 144
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.87 E-value=0.028 Score=41.46 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=16.1
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||+..+.
T Consensus 34 ~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 34 ALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHH
Confidence 899999999999998753
No 145
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.86 E-value=0.048 Score=44.77 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=30.3
Q ss_pred CceeecchhHHHHHHHHhc----CCC-CC-cceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSA----LND-VD-TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~----~~~-~~-~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++-+..+.+.+.. ... .. +-++|..|+||||||+.+.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia 129 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIA 129 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3688998877777554421 111 12 2788999999999999874
No 146
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.85 E-value=0.026 Score=42.21 Aligned_cols=18 Identities=39% Similarity=0.601 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 50 ~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 50 ALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp EEECSTTSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999874
No 147
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.84 E-value=0.029 Score=37.93 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|.+|+|||||...+.
T Consensus 24 i~vvG~~~~GKSsli~~l~ 42 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 4899999999999998764
No 148
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.84 E-value=0.026 Score=42.25 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 37 ~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 37 LVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp EEECSTTSSHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 899999999999999864
No 149
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.83 E-value=0.029 Score=41.57 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=15.8
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|+|||||++.+
T Consensus 39 ~i~G~~G~GKTTl~~~i 55 (296)
T 1cr0_A 39 MVTSGSGMGKSTFVRQQ 55 (296)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHH
Confidence 89999999999999875
No 150
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.79 E-value=0.027 Score=42.46 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 54 ~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 54 VVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp EEECCTTSSHHHHHHHHT
T ss_pred EEEcCCCCcHHHHHHHHH
Confidence 999999999999999864
No 151
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.75 E-value=0.053 Score=44.12 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=30.7
Q ss_pred CceeecchhHHHHHHHHhc---CC----------CCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSA---LN----------DVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~---~~----------~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+|.|.++.++.|.+.+.- .. ...+-++|..|.|||+||++|-
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA 236 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVA 236 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 4688999888888665531 11 0123677999999999999874
No 152
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.75 E-value=0.027 Score=43.15 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=16.2
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 104 ~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 104 MIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp EEECCTTSCHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHH
Confidence 899999999999998763
No 153
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.71 E-value=0.052 Score=42.33 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=15.9
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|.|..|.|||||++.+
T Consensus 96 gI~GpsGSGKSTl~~~L 112 (321)
T 3tqc_A 96 GIAGSVAVGKSTTSRVL 112 (321)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 99999999999999876
No 154
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.71 E-value=0.028 Score=42.10 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 45 ~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 45 GLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp EEECCTTSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 155
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.67 E-value=0.029 Score=41.86 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 30 HLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp EEECCTTSSHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 899999999999999864
No 156
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.62 E-value=0.034 Score=37.32 Aligned_cols=20 Identities=40% Similarity=0.390 Sum_probs=16.8
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
++.|+|..|+|||||.+.+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~ 35 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIY 35 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35799999999999997654
No 157
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.61 E-value=0.03 Score=42.47 Aligned_cols=18 Identities=22% Similarity=0.551 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 51 ~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 51 ILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EEECCTTSSHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 999999999999999864
No 158
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.59 E-value=0.029 Score=42.75 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=17.4
Q ss_pred cceEecCCCcHHHHHHhhhc
Q 046733 86 TVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+-|+|..|+|||+||+.+.+
T Consensus 155 lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 155 LYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 48899999999999998753
No 159
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.58 E-value=0.06 Score=44.83 Aligned_cols=18 Identities=28% Similarity=0.628 Sum_probs=16.3
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++++.
T Consensus 297 ~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 297 LMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCcccHHHHHHHHH
Confidence 899999999999998764
No 160
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.57 E-value=0.064 Score=43.49 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=31.1
Q ss_pred CceeecchhHHHHHHHHhc---CC---------C-CCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSA---LN---------D-VDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~---~~---------~-~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.++.|.++.++.|.+.+.. .. . ..+-++|..|.|||+||++|-
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHH
Confidence 4688999988888776531 11 0 123677999999999999873
No 161
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.51 E-value=0.032 Score=41.59 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 35 ~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 35 AVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp EEECCSSSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 162
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.46 E-value=0.034 Score=40.60 Aligned_cols=18 Identities=22% Similarity=0.599 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|+|||||++.+.
T Consensus 23 vl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 23 VLIGASGVGRSHIKNALL 40 (197)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHH
Confidence 889999999999999764
No 163
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.45 E-value=0.036 Score=42.08 Aligned_cols=19 Identities=32% Similarity=0.690 Sum_probs=17.3
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||.+.+|
T Consensus 21 I~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp EEEEEETTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4899999999999999876
No 164
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.42 E-value=0.067 Score=43.32 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=30.4
Q ss_pred CceeecchhHHHHHHHHhc----CC---------CCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSA----LN---------DVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~----~~---------~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+|.|.++.++.|.+.+.- +. ...+=++|..|.|||.||++|-
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA 203 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVA 203 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHH
Confidence 4688999888888665421 11 1123677999999999999873
No 165
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.40 E-value=0.075 Score=41.00 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=15.6
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|.+|+|||||+..+
T Consensus 83 ~i~G~~G~GKSTl~~~L 99 (355)
T 3p32_A 83 GITGVPGVGKSTAIEAL 99 (355)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 89999999999999865
No 166
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.38 E-value=0.046 Score=36.68 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=16.8
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 26 i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 26 VAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999998764
No 167
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.36 E-value=0.036 Score=37.53 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 51 i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 51 IIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3899999999999998754
No 168
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.31 E-value=0.047 Score=36.92 Aligned_cols=19 Identities=16% Similarity=0.323 Sum_probs=16.9
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 26 i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 26 IALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4899999999999998764
No 169
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.27 E-value=0.034 Score=44.04 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=16.0
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
-|+|+.|.||||+|+.+.
T Consensus 262 il~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 262 VAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp EEESCTTSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 678999999999999863
No 170
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.20 E-value=0.033 Score=38.34 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||.+.+.
T Consensus 29 v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 29 VAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp EEEEECTTSSHHHHHTTTC
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4999999999999998753
No 171
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.20 E-value=0.044 Score=38.55 Aligned_cols=17 Identities=24% Similarity=0.426 Sum_probs=15.2
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|.|..|+||||||..+
T Consensus 27 ~i~G~~GsGKTtl~~~~ 43 (247)
T 2dr3_A 27 LLSGGPGTGKTIFSQQF 43 (247)
T ss_dssp EEEECTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 88999999999998754
No 172
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.17 E-value=0.046 Score=42.60 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=17.7
Q ss_pred cceEecCCCcHHHHHHhhhc
Q 046733 86 TVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+.|+|..|.|||||.+.+..
T Consensus 178 i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 178 IVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp EEEEESSSSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 49999999999999998754
No 173
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.16 E-value=0.05 Score=44.96 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=30.2
Q ss_pred CceeecchhHHHHHHHHh----cCC---------CCCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLS----ALN---------DVDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~----~~~---------~~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+|.|.++.++.|.+.+. ... ...+-++|..|.|||+||++|-
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA 264 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVA 264 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHH
Confidence 368899988888876542 111 0122667999999999999873
No 174
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.15 E-value=0.029 Score=43.36 Aligned_cols=18 Identities=28% Similarity=0.632 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 84 aivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 84 ALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp EEESSSCHHHHHHHHHHT
T ss_pred EEECCCCchHHHHHHHHH
Confidence 999999999999999874
No 175
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.09 E-value=0.045 Score=45.91 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=31.7
Q ss_pred CceeecchhHHHHHHHHhcCC-----CC----CcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALN-----DV----DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~-----~~----~~~IvGmGGiGKTTLA~~Vy 104 (106)
..++|.++.++.|...+.... .. .+-++|..|+|||+||+.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la 509 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLS 509 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHH
Confidence 468999988888877664211 01 12678999999999999874
No 176
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.08 E-value=0.041 Score=41.42 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 34 ~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 34 IILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp EEECCTTSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999874
No 177
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.07 E-value=0.026 Score=38.95 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=17.2
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
++.|+|..|+|||||...+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 34999999999999998763
No 178
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.04 E-value=0.044 Score=39.41 Aligned_cols=17 Identities=41% Similarity=0.319 Sum_probs=15.8
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|+.|.||||+++.+
T Consensus 20 ~i~G~~gsGKst~~~~l 36 (236)
T 1q3t_A 20 AIDGPASSGKSTVAKII 36 (236)
T ss_dssp EEECSSCSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 89999999999999875
No 179
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.02 E-value=0.053 Score=37.27 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=16.4
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||.+.+.
T Consensus 23 i~~vG~~~vGKTsLi~~l~ 41 (196)
T 3llu_A 23 ILLMGLRRSGKSSIQKVVF 41 (196)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999988654
No 180
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.02 E-value=0.045 Score=36.10 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=17.1
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
++.|+|..|+|||||...+.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~ 36 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 34899999999999998764
No 181
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.97 E-value=0.042 Score=42.61 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 130 aIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 130 AFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp EEECSSSSSHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 999999999999999864
No 182
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.96 E-value=0.043 Score=41.04 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 29 ~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 29 LVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp EEECSTTCSHHHHHHHHH
T ss_pred EEECCCCccHHHHHHHHH
Confidence 999999999999999764
No 183
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.96 E-value=0.029 Score=48.19 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=31.5
Q ss_pred ceeecchhHHHHHHHHhcCC----C-C----CcceEecCCCcHHHHHHhhh
Q 046733 63 FAYGRDGDRNKIINRLSALN----D-V----DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 63 ~vvGrd~~~~~lv~~L~~~~----~-~----~~~IvGmGGiGKTTLA~~Vy 104 (106)
.++|.+..++.+...+.... . . .+-|+|..|+|||+||+.+.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la 609 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLA 609 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 58999988888877764321 1 1 12778999999999999875
No 184
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.94 E-value=0.05 Score=46.88 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=31.3
Q ss_pred CceeecchhHHHHHHHHhcCC---C----------CCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALN---D----------VDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~---~----------~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+++|.++-++.|.+.+.... . ..+-++|..|+||||||+.+.
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala 532 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 532 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHH
Confidence 468898888888877654210 0 012788999999999999874
No 185
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.88 E-value=0.049 Score=41.61 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 68 ~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 68 AVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp EEEESTTSSHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 899999999999999874
No 186
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.78 E-value=0.046 Score=43.22 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=16.3
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 161 ~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 161 MIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp EEECCTTSCHHHHHHHHH
T ss_pred EEEcCCCChHHHHHHHHH
Confidence 899999999999998764
No 187
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.76 E-value=0.047 Score=42.44 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=15.8
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|.|||||++.+
T Consensus 133 ~lvG~nGaGKTTll~~L 149 (328)
T 3e70_C 133 MFVGFNGSGKTTTIAKL 149 (328)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 89999999999999875
No 188
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.74 E-value=0.055 Score=36.19 Aligned_cols=19 Identities=37% Similarity=0.658 Sum_probs=16.7
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 21 i~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999998754
No 189
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.64 E-value=0.053 Score=39.54 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=16.2
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|.|+.|.||||+++.+.
T Consensus 30 ~i~G~~GsGKsT~~~~l~ 47 (229)
T 4eaq_A 30 TFEGPEGSGKTTVINEVY 47 (229)
T ss_dssp EEECCTTSCHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHH
Confidence 888999999999999764
No 190
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.64 E-value=0.059 Score=36.66 Aligned_cols=20 Identities=20% Similarity=0.484 Sum_probs=17.2
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
++.|+|..|+|||||...+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 44999999999999998764
No 191
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.63 E-value=0.04 Score=40.27 Aligned_cols=18 Identities=22% Similarity=0.075 Sum_probs=16.0
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|.|.-|.||||+|+.+-
T Consensus 28 ~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 28 SIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp EEECSTTSSHHHHHTTTG
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 888999999999998753
No 192
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.62 E-value=0.059 Score=35.76 Aligned_cols=19 Identities=32% Similarity=0.608 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 21 i~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4899999999999998764
No 193
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.61 E-value=0.051 Score=41.86 Aligned_cols=17 Identities=29% Similarity=0.651 Sum_probs=15.6
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|.+|.||||++..+
T Consensus 108 ~ivG~~GsGKTTl~~~L 124 (306)
T 1vma_A 108 MVVGVNGTGKTTSCGKL 124 (306)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEEcCCCChHHHHHHHH
Confidence 89999999999999875
No 194
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.60 E-value=0.08 Score=42.66 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=15.4
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|.+|+||||++..+
T Consensus 103 ~ivG~~GvGKTTla~~L 119 (432)
T 2v3c_C 103 LLVGIQGSGKTTTAAKL 119 (432)
T ss_dssp EEECCSSSSTTHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 89999999999998764
No 195
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.58 E-value=0.062 Score=35.40 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=17.2
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
++.|+|..|+|||||...+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 45899999999999998764
No 196
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.58 E-value=0.1 Score=45.61 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=30.9
Q ss_pred CceeecchhHHHHHHHHh----cCCC---C------CcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLS----ALND---V------DTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~----~~~~---~------~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
.+|.|.++.++.|.+++. .+.. . .+-++|..|.|||+||++|.+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~ 260 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 468899988888876642 2211 0 126779999999999998753
No 197
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.52 E-value=0.054 Score=37.58 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=16.2
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+.|+|..|+|||||...+
T Consensus 26 i~vvG~~~vGKSsLi~~l 43 (195)
T 3cbq_A 26 VMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp EEEECSTTSSHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 389999999999999875
No 198
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.49 E-value=0.05 Score=37.82 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=16.3
Q ss_pred CcceEecCCCcHHHHHHhh
Q 046733 85 DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~V 103 (106)
++.|+|..|+|||||...+
T Consensus 32 ki~vvG~~~~GKSsLi~~l 50 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISY 50 (204)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 3499999999999999764
No 199
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=91.64 E-value=0.023 Score=39.15 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=16.3
Q ss_pred CcceEecCCCcHHHHHHhh
Q 046733 85 DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~V 103 (106)
++.|+|..|+|||||...+
T Consensus 32 ki~v~G~~~~GKSsli~~l 50 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISY 50 (204)
Confidence 4589999999999998654
No 200
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.42 E-value=0.059 Score=36.83 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=17.3
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
.|+|..|.|||||..++++
T Consensus 27 ~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 27 LIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 8999999999999998764
No 201
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.33 E-value=0.064 Score=41.42 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=17.1
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|.|||||.+.+.
T Consensus 174 v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 174 VIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp EEEEESTTSCHHHHHHHGG
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4999999999999999875
No 202
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.19 E-value=0.061 Score=40.82 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.9
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|.+|.||||++..+.
T Consensus 102 ~i~g~~G~GKTT~~~~la 119 (295)
T 1ls1_A 102 FLVGLQGSGKTTTAAKLA 119 (295)
T ss_dssp EEECCTTTTHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 788999999999998753
No 203
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.18 E-value=0.15 Score=37.33 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=16.9
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.++|..|+|||||...++
T Consensus 42 I~vvG~~g~GKSSLin~l~ 60 (270)
T 1h65_A 42 ILVMGKGGVGKSSTVNSII 60 (270)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4899999999999998765
No 204
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.18 E-value=0.066 Score=42.49 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 34 ~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 34 FIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCchHHHHHHHHh
Confidence 999999999999999864
No 205
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.16 E-value=0.066 Score=36.58 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=16.4
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 24 i~vvG~~~vGKTsLi~~l~ 42 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFL 42 (187)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 4899999999999997653
No 206
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.15 E-value=0.069 Score=36.28 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=17.1
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
++.|+|..|+|||||...+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 45899999999999988753
No 207
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.11 E-value=0.062 Score=42.82 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 58 ~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 58 GVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEEcCCCchHHHHHHHHh
Confidence 999999999999999864
No 208
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.10 E-value=0.068 Score=36.62 Aligned_cols=18 Identities=28% Similarity=0.174 Sum_probs=15.8
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+.|+|..|+|||||...+
T Consensus 23 i~ivG~~~vGKSsL~~~~ 40 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRY 40 (184)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 489999999999999754
No 209
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.09 E-value=0.16 Score=37.21 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=16.9
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 39 I~lvG~~g~GKSSLin~l~ 57 (262)
T 3def_A 39 VLVLGKGGVGKSSTVNSLI 57 (262)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4999999999999998764
No 210
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.08 E-value=0.11 Score=42.59 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=30.5
Q ss_pred CceeecchhHHHHHHHHh---cCCC----------CCcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLS---ALND----------VDTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~---~~~~----------~~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+|-|.++.++.|.+.+. ...+ ..+-++|..|.|||.||++|-
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA 237 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVA 237 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHH
Confidence 468899988888866542 1111 123677999999999999873
No 211
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.02 E-value=0.077 Score=36.44 Aligned_cols=20 Identities=15% Similarity=0.366 Sum_probs=17.1
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
++.|+|..|+|||||...+.
T Consensus 25 ki~~vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 34899999999999998754
No 212
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.98 E-value=0.074 Score=35.94 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=16.7
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 20 i~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 20 VVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp EEEECCTTSCHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4899999999999998764
No 213
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.97 E-value=0.084 Score=36.28 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=16.7
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 27 i~vvG~~~~GKSsli~~l~ 45 (201)
T 3oes_A 27 VVILGYRCVGKTSLAHQFV 45 (201)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 4899999999999998764
No 214
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.96 E-value=0.067 Score=42.81 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=15.6
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-++|+.|.||||+++.+
T Consensus 43 vlvGlpGsGKSTia~~L 59 (469)
T 1bif_A 43 VMVGLPARGKTYISKKL 59 (469)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 78899999999999975
No 215
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.96 E-value=0.12 Score=41.61 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=24.4
Q ss_pred ecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733 66 GRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 66 Grd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy 104 (106)
|...+...++..+.. ....+ .|+|..|.|||||.+.+.
T Consensus 150 g~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKTTlL~all 188 (418)
T 1p9r_A 150 GMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGL 188 (418)
T ss_dssp CCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHH
Confidence 444333444444433 22334 899999999999998764
No 216
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.96 E-value=0.072 Score=36.38 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=17.0
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
++.|+|..|+|||||...+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~ 49 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFL 49 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 34999999999999998754
No 217
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.96 E-value=0.053 Score=45.19 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|+.|.|||||++.+.
T Consensus 373 ~LiG~sGSGKSTLar~La 390 (552)
T 3cr8_A 373 FFTGLSGAGKSTLARALA 390 (552)
T ss_dssp EEEESSCHHHHHHHHHHH
T ss_pred EEECCCCChHHHHHHHHH
Confidence 889999999999999863
No 218
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.96 E-value=0.066 Score=41.35 Aligned_cols=17 Identities=29% Similarity=0.659 Sum_probs=15.3
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|.+|.||||++..+
T Consensus 109 ~ivG~~G~GKTT~~~~L 125 (320)
T 1zu4_A 109 MLVGVNGTGKTTSLAKM 125 (320)
T ss_dssp EEESSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 78899999999999865
No 219
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.95 E-value=0.08 Score=36.10 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 23 i~~~G~~~~GKssl~~~l~ 41 (201)
T 2q3h_A 23 CVLVGDGAVGKTSLVVSYT 41 (201)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999998754
No 220
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.95 E-value=0.07 Score=36.16 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 28 i~v~G~~~~GKSsLi~~l~ 46 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFT 46 (193)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 3899999999999998754
No 221
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.89 E-value=0.067 Score=43.92 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=15.7
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-++|+.|.||||+|+.+
T Consensus 39 vlvGlpGSGKSTia~~L 55 (520)
T 2axn_A 39 VMVGLPARGKTYISKKL 55 (520)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 78899999999999976
No 222
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.88 E-value=0.097 Score=40.90 Aligned_cols=31 Identities=23% Similarity=0.139 Sum_probs=21.3
Q ss_pred HHHHHhcCCCC-CcceEecCCCcHHHHHHhhh
Q 046733 74 IINRLSALNDV-DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 74 lv~~L~~~~~~-~~~IvGmGGiGKTTLA~~Vy 104 (106)
+++.+..-... .+.|+|..|.|||||.+.+.
T Consensus 61 ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~ 92 (347)
T 2obl_A 61 AIDGLLTCGIGQRIGIFAGSGVGKSTLLGMIC 92 (347)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred EEEeeeeecCCCEEEEECCCCCCHHHHHHHHh
Confidence 45555322222 33999999999999998763
No 223
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.86 E-value=0.082 Score=35.62 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=17.1
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
++.|+|..|+|||||...+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 34899999999999998754
No 224
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.85 E-value=0.14 Score=38.70 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=16.2
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|+|||||.+.+.
T Consensus 173 ~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 173 TMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp EEECSTTSSHHHHHHHHS
T ss_pred EEECCCCCcHHHHHHHhc
Confidence 899999999999998763
No 225
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.85 E-value=0.07 Score=42.18 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 45 ~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 45 GLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 899999999999999864
No 226
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.84 E-value=0.09 Score=35.75 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=16.5
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 26 i~v~G~~~~GKSsli~~l~ 44 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYA 44 (191)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHh
Confidence 4899999999999998753
No 227
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.83 E-value=0.07 Score=42.31 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=16.0
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
-|+|+.|+||||||..+.
T Consensus 127 LI~GpPGsGKTtLAlqlA 144 (331)
T 2vhj_A 127 IVTGKGNSGKTPLVHALG 144 (331)
T ss_dssp EEECSCSSSHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHH
Confidence 788999999999998763
No 228
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.81 E-value=0.084 Score=35.47 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=17.3
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
++.|+|..|+|||||...+.
T Consensus 20 ~i~v~G~~~~GKssl~~~l~ 39 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFN 39 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 44899999999999998764
No 229
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.80 E-value=0.085 Score=36.00 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=16.7
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 26 i~vvG~~~~GKSsli~~l~ 44 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFV 44 (192)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 4899999999999998764
No 230
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.77 E-value=0.17 Score=40.14 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 173 ~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 173 LFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 899999999999999764
No 231
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.75 E-value=0.077 Score=39.06 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=15.3
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|..|.||+|.|+.+
T Consensus 33 ~llGpPGsGKgTqa~~L 49 (217)
T 3umf_A 33 FVLGGPGSGKGTQCEKL 49 (217)
T ss_dssp EEECCTTCCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 67799999999999875
No 232
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.68 E-value=0.082 Score=35.49 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 18 i~v~G~~~~GKssli~~l~ 36 (195)
T 1x3s_A 18 ILIIGESGVGKSSLLLRFT 36 (195)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999998764
No 233
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.66 E-value=0.075 Score=42.00 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 33 ~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 33 ALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEEcCCCchHHHHHHHHH
Confidence 899999999999999864
No 234
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.66 E-value=0.088 Score=36.92 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=16.7
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 31 i~vvG~~~vGKSsLi~~l~ 49 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFA 49 (205)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4899999999999998754
No 235
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.63 E-value=0.099 Score=36.55 Aligned_cols=19 Identities=37% Similarity=0.503 Sum_probs=16.7
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 37 i~vvG~~~vGKSsli~~l~ 55 (214)
T 2j1l_A 37 VVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 4899999999999998764
No 236
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.62 E-value=0.1 Score=35.22 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=16.8
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 24 i~v~G~~~~GKSsli~~l~ 42 (181)
T 2h17_A 24 VIIVGLDNAGKTTILYQFS 42 (181)
T ss_dssp EEEEEETTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4899999999999998764
No 237
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.61 E-value=0.077 Score=42.04 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 33 ~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 33 ILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCcHHHHHHHHHH
Confidence 899999999999999864
No 238
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.61 E-value=0.076 Score=42.48 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 33 ~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 33 VFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEEcCCCchHHHHHHHHH
Confidence 999999999999999864
No 239
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.58 E-value=0.1 Score=36.01 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 28 i~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 4899999999999998764
No 240
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.57 E-value=0.078 Score=41.95 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 33 ~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 33 ALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCchHHHHHHHHh
Confidence 899999999999999864
No 241
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.53 E-value=0.15 Score=41.14 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=21.6
Q ss_pred HHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733 74 IINRLSALNDVDT-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 74 lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy 104 (106)
+++.+..-..... .|+|..|.|||||.+.+.
T Consensus 147 vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Ia 178 (438)
T 2dpy_A 147 AINALLTVGRGQRMGLFAGSGVGKSVLLGMMA 178 (438)
T ss_dssp HHHHHSCCBTTCEEEEEECTTSSHHHHHHHHH
T ss_pred EEeeeEEecCCCEEEEECCCCCCHHHHHHHHh
Confidence 4555533222233 999999999999998764
No 242
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.53 E-value=0.086 Score=35.85 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 26 i~~vG~~~~GKSsl~~~l~ 44 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFS 44 (194)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 4899999999999998754
No 243
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.53 E-value=0.1 Score=39.58 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=16.3
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.++|..|+|||||.+.+.
T Consensus 169 ~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 169 ILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 889999999999998763
No 244
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.49 E-value=0.084 Score=35.90 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=16.5
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 24 i~v~G~~~~GKSsli~~l~ 42 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFT 42 (191)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 3899999999999998764
No 245
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.47 E-value=0.081 Score=42.00 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 41 ~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 41 VLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCChHHHHHHHHH
Confidence 999999999999999864
No 246
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.46 E-value=0.093 Score=35.56 Aligned_cols=19 Identities=16% Similarity=0.407 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 24 i~v~G~~~~GKSsli~~l~ 42 (190)
T 2h57_A 24 VLCLGLDNSGKTTIINKLK 42 (190)
T ss_dssp EEEEECTTSSHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4899999999999998753
No 247
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.45 E-value=0.091 Score=40.79 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=16.1
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||+..+.
T Consensus 135 ~I~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 135 EVFGEFGSGKTQLAHTLA 152 (349)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 899999999999998753
No 248
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.41 E-value=0.091 Score=42.67 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=17.2
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|.|||||++.+.
T Consensus 141 v~IvGpnGsGKSTLlr~L~ 159 (460)
T 2npi_A 141 VVIVGGSQTGKTSLSRTLC 159 (460)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3999999999999999875
No 249
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.40 E-value=0.09 Score=35.74 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=16.7
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 25 i~v~G~~~~GKSsli~~l~ 43 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIA 43 (188)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999998764
No 250
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.39 E-value=0.094 Score=37.46 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=16.8
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 32 i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 32 IVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 4899999999999998764
No 251
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.39 E-value=0.095 Score=37.01 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=16.8
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 32 I~vvG~~~vGKSsLin~l~ 50 (228)
T 2qu8_A 32 IILSGAPNVGKSSFMNIVS 50 (228)
T ss_dssp EEEECSTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4899999999999998764
No 252
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.38 E-value=0.1 Score=35.40 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 21 i~v~G~~~~GKssli~~l~ 39 (194)
T 2atx_A 21 CVVVGDGAVGKTCLLMSYA 39 (194)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4899999999999998764
No 253
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.38 E-value=0.22 Score=37.76 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=24.6
Q ss_pred hhHHHHHHHHhcCCCCC-cceEecCCCcHHHHHHhh
Q 046733 69 GDRNKIINRLSALNDVD-TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 69 ~~~~~lv~~L~~~~~~~-~~IvGmGGiGKTTLA~~V 103 (106)
+..+.+.+.+...+... +-++|..|+|||++|+.+
T Consensus 9 ~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~l 44 (334)
T 1a5t_A 9 PDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_dssp HHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHH
Confidence 44556666665544333 378899999999999865
No 254
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.36 E-value=0.092 Score=35.54 Aligned_cols=19 Identities=16% Similarity=0.358 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 23 i~v~G~~~~GKSsli~~l~ 41 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999998764
No 255
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.29 E-value=0.094 Score=35.86 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 29 i~vvG~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFT 47 (192)
T ss_dssp EEEECSTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3899999999999998764
No 256
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.27 E-value=0.091 Score=39.02 Aligned_cols=17 Identities=35% Similarity=0.667 Sum_probs=14.7
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|-||+||||+|-.+
T Consensus 45 ~v~~KGGvGKTT~a~nL 61 (307)
T 3end_A 45 AVYGKGGIGKSTTSSNL 61 (307)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCccHHHHHHHH
Confidence 77799999999998753
No 257
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.23 E-value=0.1 Score=36.06 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 28 i~vvG~~~~GKSsli~~l~ 46 (207)
T 2fv8_A 28 LVVVGDGACGKTCLLIVFS 46 (207)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 4899999999999998754
No 258
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.22 E-value=0.11 Score=41.53 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 51 ~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 51 GLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCChHHHHHHHHh
Confidence 999999999999999874
No 259
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.18 E-value=0.066 Score=42.12 Aligned_cols=18 Identities=39% Similarity=0.518 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 30 ~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 30 VILGPTGAGKTLFLELIA 47 (348)
T ss_dssp EEECCCTHHHHHHHHHHH
T ss_pred EEECCCCccHHHHHHHHH
Confidence 899999999999999864
No 260
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.12 E-value=0.11 Score=35.18 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=16.5
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 25 i~vvG~~~~GKSsli~~l~ 43 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYA 43 (189)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3899999999999998753
No 261
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.10 E-value=0.12 Score=36.25 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=16.5
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 29 i~lvG~~~vGKSsLi~~l~ 47 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFT 47 (201)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 3899999999999998653
No 262
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.08 E-value=0.098 Score=37.32 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=17.5
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
.|+|..|.|||||..+|++
T Consensus 27 ~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 27 LIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 8999999999999998864
No 263
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.08 E-value=0.094 Score=43.16 Aligned_cols=18 Identities=39% Similarity=0.486 Sum_probs=16.9
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.++
T Consensus 316 ~i~G~NGsGKSTLlk~l~ 333 (538)
T 1yqt_A 316 GIVGPNGIGKTTFVKMLA 333 (538)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999875
No 264
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.02 E-value=0.11 Score=35.51 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=16.7
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 23 i~v~G~~~~GKSsli~~l~ 41 (213)
T 3cph_A 23 ILLIGDSGVGKSCLLVRFV 41 (213)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3899999999999998764
No 265
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.99 E-value=0.21 Score=38.57 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 59 ~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 59 GITGVPGVGKSTTIDALG 76 (337)
T ss_dssp EEECCTTSCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999998763
No 266
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.97 E-value=0.11 Score=35.64 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=16.7
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 31 i~v~G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 31 IVLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 4899999999999998764
No 267
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=90.96 E-value=0.17 Score=40.01 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|+|||||.+.+.
T Consensus 184 aivG~~gvGKSTLln~l~ 201 (439)
T 1mky_A 184 AIVGRPNVGKSTLFNAIL 201 (439)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999998764
No 268
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.94 E-value=0.25 Score=37.88 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=15.8
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|.+|.|||||+..+
T Consensus 60 ~i~G~~g~GKSTl~~~l 76 (341)
T 2p67_A 60 GVTGTPGAGKSTFLEAF 76 (341)
T ss_dssp EEEECTTSCHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHH
Confidence 89999999999999875
No 269
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.94 E-value=0.11 Score=35.86 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=16.7
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 28 i~vvG~~~~GKSsLi~~l~ 46 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYT 46 (217)
T ss_dssp EEEESCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 4899999999999998764
No 270
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=90.93 E-value=0.1 Score=41.12 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=15.0
Q ss_pred ceEecCCCcHHHHHHh
Q 046733 87 VIVGIGGLGKIVVWKN 102 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~ 102 (106)
-|+|.||.||||+++.
T Consensus 37 lllG~~~SGKST~~kq 52 (362)
T 1zcb_A 37 LLLGAGESGKSTFLKQ 52 (362)
T ss_dssp EEECSTTSSHHHHHHH
T ss_pred EEECCCCCcHHHHHHH
Confidence 7889999999999986
No 271
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.89 E-value=0.11 Score=42.63 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 373 ~ivG~sGsGKSTLl~~l~ 390 (582)
T 3b60_A 373 ALVGRSGSGKSTIASLIT 390 (582)
T ss_dssp EEEECTTSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 272
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.88 E-value=0.1 Score=40.91 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 140 ~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 140 LVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp EEECSSSSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 899999999999998764
No 273
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.86 E-value=0.099 Score=43.21 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.++
T Consensus 298 ~i~G~nGsGKSTLl~~l~ 315 (538)
T 3ozx_A 298 GILGPNGIGKTTFARILV 315 (538)
T ss_dssp EEECCTTSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999875
No 274
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.82 E-value=0.12 Score=34.94 Aligned_cols=20 Identities=15% Similarity=0.400 Sum_probs=17.1
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
++.|+|..|+|||||...+.
T Consensus 24 ~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 44999999999999998753
No 275
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.77 E-value=0.15 Score=38.15 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=15.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
-|.|..|.||||+|..+.
T Consensus 62 li~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 62 VFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp EEESCGGGCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 788999999999987654
No 276
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.75 E-value=0.12 Score=35.69 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 32 i~vvG~~~vGKSsli~~l~ 50 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFK 50 (201)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 3899999999999998753
No 277
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.71 E-value=0.058 Score=42.39 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 35 ~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 35 GILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp EEECSCHHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 899999999999999864
No 278
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.67 E-value=0.11 Score=41.93 Aligned_cols=17 Identities=24% Similarity=0.517 Sum_probs=15.0
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|.+|+||||++-.+
T Consensus 104 ~ivG~~GvGKTT~a~~L 120 (433)
T 2xxa_A 104 LMAGLQGAGKTTSVGKL 120 (433)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 78899999999998764
No 279
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.64 E-value=0.14 Score=35.26 Aligned_cols=19 Identities=37% Similarity=0.405 Sum_probs=16.5
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 28 i~vvG~~~~GKSsli~~l~ 46 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFS 46 (201)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999998754
No 280
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.62 E-value=0.089 Score=40.16 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=15.2
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.++|.+|.||||++..+
T Consensus 102 ~i~G~~G~GKTT~~~~l 118 (297)
T 1j8m_F 102 MLVGVQGTGKTTTAGKL 118 (297)
T ss_dssp EEECSSCSSTTHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 78899999999998865
No 281
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.51 E-value=0.11 Score=42.67 Aligned_cols=18 Identities=39% Similarity=0.377 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 51 ~LvG~NGaGKSTLlk~l~ 68 (538)
T 1yqt_A 51 GIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 282
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=90.39 E-value=0.12 Score=39.57 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=17.4
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
.|+|..|.|||||..+||+
T Consensus 27 ~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 27 LIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 8999999999999998864
No 283
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.39 E-value=0.12 Score=42.50 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 373 ~ivG~sGsGKSTll~~l~ 390 (582)
T 3b5x_A 373 ALVGRSGSGKSTIANLFT 390 (582)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 284
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.38 E-value=0.12 Score=40.93 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=15.7
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|+-|+||||||..+
T Consensus 44 vI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 44 VLMGATGTGKSRLSIDL 60 (339)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 89999999999999875
No 285
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=90.38 E-value=0.14 Score=36.92 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=16.8
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 25 I~lvG~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 25 IILVGKTGTGKSAAGNSIL 43 (260)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4999999999999998763
No 286
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.26 E-value=0.13 Score=41.31 Aligned_cols=18 Identities=33% Similarity=0.752 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|+|||||.+.++
T Consensus 35 ~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 35 MVVGESGLGKSTLINSLF 52 (418)
T ss_dssp EEECCTTSSHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 899999999999999875
No 287
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.22 E-value=0.13 Score=36.06 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 30 i~vvG~~~vGKSsL~~~l~ 48 (214)
T 3q3j_B 30 LVLVGDVQCGKTAMLQVLA 48 (214)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 3899999999999998753
No 288
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.21 E-value=0.14 Score=35.95 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=15.0
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|..|+|||+||..+
T Consensus 34 ~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 34 LLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHH
Confidence 78899999999999753
No 289
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.07 E-value=0.13 Score=42.55 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 29 gLiGpNGaGKSTLlkiL~ 46 (538)
T 3ozx_A 29 GVLGKNGVGKTTVLKILA 46 (538)
T ss_dssp EEECCTTSSHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 999999999999999864
No 290
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.05 E-value=0.14 Score=39.82 Aligned_cols=17 Identities=29% Similarity=0.194 Sum_probs=15.5
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|..|+||||||..+
T Consensus 65 ~I~G~pGsGKTtLal~l 81 (349)
T 2zr9_A 65 EIYGPESSGKTTVALHA 81 (349)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 88999999999998865
No 291
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.01 E-value=0.11 Score=42.17 Aligned_cols=20 Identities=30% Similarity=0.518 Sum_probs=17.7
Q ss_pred cceEecCCCcHHHHHHhhhc
Q 046733 86 TVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy~ 105 (106)
+.|+|..|.|||||.+.++-
T Consensus 45 vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 48999999999999998753
No 292
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.97 E-value=0.14 Score=40.25 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=16.8
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|.|||||.+.+.
T Consensus 126 i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 126 VLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp EEEECSTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3999999999999998763
No 293
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.95 E-value=0.12 Score=40.28 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=18.1
Q ss_pred CcceEecCCCcHHHHHHhhhc
Q 046733 85 DTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
++.|+|..|+|||||...+|.
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHhC
Confidence 448999999999999998763
No 294
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=89.86 E-value=0.089 Score=36.45 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=16.8
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 32 i~v~G~~~~GKSslin~l~ 50 (223)
T 4dhe_A 32 IAFAGRSNAGKSTAINVLC 50 (223)
T ss_dssp EEEEESCHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 4899999999999998764
No 295
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=89.77 E-value=0.14 Score=42.70 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=15.5
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|.|+.|.||||+|+.+
T Consensus 400 ~l~GlsGSGKSTiA~~L 416 (573)
T 1m8p_A 400 FLTGYMNSGKDAIARAL 416 (573)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EeecCCCCCHHHHHHHH
Confidence 77899999999999976
No 296
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=89.70 E-value=0.15 Score=39.28 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=15.2
Q ss_pred Cc-ceEecCCCcHHHHHHh
Q 046733 85 DT-VIVGIGGLGKIVVWKN 102 (106)
Q Consensus 85 ~~-~IvGmGGiGKTTLA~~ 102 (106)
++ .|.|=||+||||.+-.
T Consensus 49 KVIAIaGKGGVGKTTtavN 67 (314)
T 3fwy_A 49 KVFAVYGKGGIGKSTTSSN 67 (314)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCccCHHHHHHH
Confidence 45 8889999999998764
No 297
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=89.65 E-value=0.14 Score=35.73 Aligned_cols=18 Identities=44% Similarity=0.625 Sum_probs=15.9
Q ss_pred CcceEecCCCcHHHHHHh
Q 046733 85 DTVIVGIGGLGKIVVWKN 102 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~ 102 (106)
++.|+|..|+|||||...
T Consensus 17 ki~v~G~~~~GKSsli~~ 34 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKR 34 (221)
T ss_dssp EEEEEECTTSSHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 348999999999999986
No 298
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.64 E-value=0.16 Score=41.18 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=15.8
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|.|||||++.+
T Consensus 43 ~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 43 LVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHH
Confidence 99999999999999973
No 299
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.61 E-value=0.15 Score=42.81 Aligned_cols=18 Identities=39% Similarity=0.486 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 386 ~i~G~NGsGKSTLlk~l~ 403 (607)
T 3bk7_A 386 GIVGPNGIGKTTFVKMLA 403 (607)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999875
No 300
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.57 E-value=0.12 Score=42.48 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=16.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 371 ~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 371 AFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp EEECSTTSSHHHHHTTTT
T ss_pred EEECCCCChHHHHHHHHh
Confidence 999999999999998764
No 301
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=89.48 E-value=0.25 Score=39.23 Aligned_cols=17 Identities=35% Similarity=0.386 Sum_probs=15.4
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|.+|.||||++..+
T Consensus 49 li~G~aGTGKT~ll~~~ 65 (459)
T 3upu_A 49 TINGPAGTGATTLTKFI 65 (459)
T ss_dssp EEECCTTSCHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHH
Confidence 88899999999999865
No 302
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.43 E-value=0.12 Score=42.61 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 374 ~ivG~sGsGKSTLl~~l~ 391 (595)
T 2yl4_A 374 ALVGPSGSGKSTVLSLLL 391 (595)
T ss_dssp EEECCTTSSSTHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 303
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.36 E-value=0.15 Score=42.72 Aligned_cols=18 Identities=39% Similarity=0.399 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 121 ~LiG~NGsGKSTLlkiL~ 138 (607)
T 3bk7_A 121 GIVGPNGTGKTTAVKILA 138 (607)
T ss_dssp EEECCTTSSHHHHHHHHT
T ss_pred EEECCCCChHHHHHHHHh
Confidence 999999999999999864
No 304
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.36 E-value=0.16 Score=41.09 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=15.3
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|.+|.||||++..+
T Consensus 102 ~i~G~~GsGKTT~~~~L 118 (425)
T 2ffh_A 102 FLVGLQGSGKTTTAAKL 118 (425)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 78899999999999865
No 305
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.31 E-value=0.12 Score=39.11 Aligned_cols=19 Identities=42% Similarity=0.699 Sum_probs=17.8
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
.|+|..|.|||||..++++
T Consensus 28 ~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 28 AIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp EEECCTTTCSTHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHH
Confidence 8999999999999999874
No 306
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=89.28 E-value=0.47 Score=34.43 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 29 i~vvG~~~~GKSSLln~l~ 47 (299)
T 2aka_B 29 IAVVGGQSAGKSSVLENFV 47 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 3899999999999998764
No 307
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=89.27 E-value=0.14 Score=41.60 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=15.1
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.++|.+|+||||++..+
T Consensus 101 ~lvG~~GsGKTTt~~kL 117 (433)
T 3kl4_A 101 MLVGVQGSGKTTTAGKL 117 (433)
T ss_dssp EECCCTTSCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 78899999999998764
No 308
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.24 E-value=0.16 Score=40.17 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|+|||||.+.+.
T Consensus 219 ~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 219 IFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCccHHHHHHHHh
Confidence 899999999999998764
No 309
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=89.23 E-value=0.16 Score=43.23 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=15.7
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|.|+.|.||||+|+.+
T Consensus 56 vLtGlsGSGKSTlAr~L 72 (630)
T 1x6v_B 56 WLTGLSGAGKTTVSMAL 72 (630)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHH
Confidence 78899999999999975
No 310
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.21 E-value=0.18 Score=41.47 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=17.0
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|.|||||.+.+.
T Consensus 263 i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 263 AIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp EEEEESTTSSHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999998764
No 311
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.13 E-value=0.14 Score=42.41 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 385 ~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 385 ALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp EEECCTTSSTTHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 999999999999999864
No 312
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.12 E-value=0.16 Score=42.06 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||++.+.
T Consensus 373 ~ivG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 373 AVLGETGSGKSTLMNLIP 390 (587)
T ss_dssp EEECSSSSSHHHHHHTTT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999764
No 313
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.09 E-value=0.24 Score=38.73 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=15.2
Q ss_pred Cc-ceEecCCCcHHHHHHhh
Q 046733 85 DT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~-~IvGmGGiGKTTLA~~V 103 (106)
++ -+-|-||+||||+|-.+
T Consensus 19 ~i~~~~gkGGvGKTt~a~~l 38 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSV 38 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHHH
Confidence 45 56699999999999754
No 314
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.08 E-value=0.19 Score=36.06 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=16.4
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|.+|+|||||.....
T Consensus 40 VvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 40 VVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3899999999999998753
No 315
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.08 E-value=0.19 Score=40.16 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=15.4
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|+|||||+..+
T Consensus 182 ~I~G~sGsGKTTLl~~l 198 (400)
T 3lda_A 182 ELFGEFRTGKSQLCHTL 198 (400)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEEcCCCCChHHHHHHH
Confidence 88999999999999854
No 316
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.05 E-value=0.17 Score=42.60 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 382 ~iiG~NGsGKSTLlk~l~ 399 (608)
T 3j16_B 382 VMMGENGTGKTTLIKLLA 399 (608)
T ss_dssp EEESCTTSSHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 899999999999999875
No 317
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.04 E-value=0.13 Score=42.54 Aligned_cols=17 Identities=6% Similarity=-0.084 Sum_probs=15.2
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-+.|+.|.||||+|+.+
T Consensus 399 ~l~GlsGsGKSTIa~~L 415 (511)
T 1g8f_A 399 VLGNSLTVSREQLSIAL 415 (511)
T ss_dssp EECTTCCSCHHHHHHHH
T ss_pred EecccCCCCHHHHHHHH
Confidence 66699999999999976
No 318
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=88.96 E-value=0.17 Score=39.72 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=17.6
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
.|+|..|.|||||..++++
T Consensus 30 ~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 30 SIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 9999999999999998874
No 319
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=88.96 E-value=0.3 Score=40.05 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=16.8
Q ss_pred CcceEecCCCcHHHHHHhh
Q 046733 85 DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~V 103 (106)
++.|+|..|.|||||++.+
T Consensus 176 r~~IvG~sG~GKTtLl~~I 194 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNI 194 (422)
T ss_dssp EEEEECCSSSSHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHH
Confidence 3499999999999999865
No 320
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=88.95 E-value=0.18 Score=39.03 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=16.1
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||...+.
T Consensus 78 ~lvG~pgaGKSTLln~L~ 95 (349)
T 2www_A 78 GLSGPPGAGKSTFIEYFG 95 (349)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHH
Confidence 999999999999998753
No 321
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.93 E-value=0.17 Score=42.53 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 107 ~LvGpNGaGKSTLLkiL~ 124 (608)
T 3j16_B 107 GLVGTNGIGKSTALKILA 124 (608)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCChHHHHHHHHh
Confidence 999999999999999764
No 322
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.85 E-value=0.19 Score=38.16 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=15.2
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|..|+||||||..+
T Consensus 72 li~G~pG~GKTtl~l~i 88 (315)
T 3bh0_A 72 LIAARPSMGKTAFALKQ 88 (315)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHH
Confidence 78899999999999864
No 323
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=88.84 E-value=0.19 Score=35.23 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=17.0
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
++.|+|..|+|||||...+.
T Consensus 15 ki~v~G~~~vGKSsli~~l~ 34 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFT 34 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 35799999999999998754
No 324
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.78 E-value=0.2 Score=39.51 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=15.5
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|..|+||||||..+
T Consensus 65 ~I~GppGsGKSTLal~l 81 (356)
T 3hr8_A 65 EIFGQESSGKTTLALHA 81 (356)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 88899999999999865
No 325
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.77 E-value=0.19 Score=41.43 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 33 ~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 33 TLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 899999999999998764
No 326
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=88.71 E-value=0.082 Score=35.86 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=3.1
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 23 i~v~G~~~~GKssli~~l~ 41 (208)
T 2yc2_C 23 VAVVGEATVGKSALISMFT 41 (208)
T ss_dssp EEEC---------------
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4889999999999987653
No 327
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=88.45 E-value=0.21 Score=36.35 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=17.2
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
++.|+|..|+|||||...+.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~ 42 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSIL 42 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 34899999999999998764
No 328
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=88.45 E-value=0.2 Score=40.88 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=15.1
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.++|.+|+||||++..+
T Consensus 104 livG~~G~GKTTt~~kL 120 (443)
T 3dm5_A 104 LMVGIQGSGKTTTVAKL 120 (443)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHH
Confidence 78899999999998764
No 329
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.35 E-value=0.25 Score=36.69 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=16.2
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|.|..|.||||+++.+.
T Consensus 31 ~~eG~~GsGKsT~~~~l~ 48 (236)
T 3lv8_A 31 VIEGLEGAGKSTAIQVVV 48 (236)
T ss_dssp EEEESTTSCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 888999999999999864
No 330
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.35 E-value=0.23 Score=37.67 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=15.4
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|..|+||||||..+
T Consensus 111 ~i~G~~GsGKT~la~~l 127 (324)
T 2z43_A 111 EFFGEFGSGKTQLCHQL 127 (324)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEECCCCCCHhHHHHHH
Confidence 88899999999999864
No 331
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=88.35 E-value=0.082 Score=39.17 Aligned_cols=19 Identities=21% Similarity=0.220 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
.|+|..|.|||||..++.+
T Consensus 31 ~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 31 TLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp HHHSCCSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 7889999999999998754
No 332
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.22 E-value=0.22 Score=39.11 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=15.3
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|.+|+||||||..+
T Consensus 67 ~I~G~pGsGKTtLal~l 83 (356)
T 1u94_A 67 EIYGPESSGKTTLTLQV 83 (356)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 88899999999999764
No 333
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=88.18 E-value=0.3 Score=40.53 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=13.6
Q ss_pred ceEecCCCcHHHH-HHhhh
Q 046733 87 VIVGIGGLGKIVV-WKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTL-A~~Vy 104 (106)
-|.|++|.|||+. +..|+
T Consensus 209 lI~GPPGTGKT~ti~~~I~ 227 (646)
T 4b3f_X 209 IIHGPPGTGKTTTVVEIIL 227 (646)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 6889999999964 44443
No 334
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.12 E-value=0.24 Score=39.82 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 73 alvG~nGaGKSTLln~L~ 90 (413)
T 1tq4_A 73 AVTGETGSGKSSFINTLR 90 (413)
T ss_dssp EEEECTTSSHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 999999999999999864
No 335
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.09 E-value=0.53 Score=35.99 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+-++|.+|.|||.||.++-
T Consensus 107 ~~l~GppgtGKt~~a~ala 125 (267)
T 1u0j_A 107 IWLFGPATTGKTNIAEAIA 125 (267)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3788999999999999764
No 336
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.06 E-value=0.25 Score=40.06 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|+|||||++.+.
T Consensus 285 ~i~G~~GsGKSTLl~~l~ 302 (525)
T 1tf7_A 285 LATGATGTGKTLLVSRFV 302 (525)
T ss_dssp EEEECTTSSHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHH
Confidence 899999999999999764
No 337
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.95 E-value=0.24 Score=36.57 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=16.1
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|.|+.|.||||+++.+.
T Consensus 25 ~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 25 TFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 778999999999999764
No 338
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.85 E-value=0.18 Score=37.25 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=13.2
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|.|+.|.||||+++.+.
T Consensus 29 ~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 29 TFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp EEECCC---CHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 778999999999999864
No 339
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=87.84 E-value=0.23 Score=41.01 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=15.4
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|.+|+||||++..+
T Consensus 105 ~ivG~~GvGKTTl~~kL 121 (504)
T 2j37_W 105 MFVGLQGSGKTTTCSKL 121 (504)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 88999999999999865
No 340
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=87.82 E-value=0.11 Score=40.22 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=16.2
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|+|||||.+.+.
T Consensus 177 ~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 177 VFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp EEEESHHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHhc
Confidence 899999999999998763
No 341
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=87.69 E-value=0.27 Score=36.87 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=15.4
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|..|+||||||..+
T Consensus 102 ~i~G~~gsGKT~la~~l 118 (322)
T 2i1q_A 102 EFAGVFGSGKTQIMHQS 118 (322)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 88899999999999864
No 342
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=87.66 E-value=0.44 Score=36.32 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=25.1
Q ss_pred ecchhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHhh
Q 046733 66 GRDGDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 66 Grd~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~V 103 (106)
|.++-++.|.+.+...+...+-++|..|.||||+|..+
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~l 38 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLEL 38 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHH
Confidence 34455666666665554222377899999999999875
No 343
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=87.59 E-value=0.24 Score=38.52 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||-.+|+
T Consensus 27 ~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 27 VVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 799999999999998876
No 344
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=87.59 E-value=0.24 Score=40.97 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=15.5
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.+.|+.|.||||+|+.+
T Consensus 376 ~l~G~~GsGKSTia~~L 392 (546)
T 2gks_A 376 WLTGLPCAGKSTIAEIL 392 (546)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EccCCCCCCHHHHHHHH
Confidence 77899999999999975
No 345
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.35 E-value=0.26 Score=39.19 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=15.3
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|..|+||||||..+
T Consensus 207 iI~G~pG~GKTtl~l~i 223 (454)
T 2r6a_A 207 IVAARPSVGKTAFALNI 223 (454)
T ss_dssp EEECCTTSCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 78899999999999865
No 346
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.30 E-value=0.24 Score=36.88 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=15.4
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|+|..|+||||||..+
T Consensus 38 lI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 38 LITGDSGVGKSETALEL 54 (205)
T ss_dssp EEECCCTTTTHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 78899999999999865
No 347
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=87.26 E-value=0.26 Score=38.80 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=17.6
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
.|+|..|.|||||..++|.
T Consensus 30 ~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 30 GIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCChhHHHHHHHH
Confidence 8999999999999999874
No 348
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=87.23 E-value=0.25 Score=37.56 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=13.7
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-+-|-||+||||+|-.+
T Consensus 18 v~sgKGGvGKTTvA~~L 34 (324)
T 3zq6_A 18 FIGGKGGVGKTTISAAT 34 (324)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEeCCCCchHHHHHHHH
Confidence 34589999999999753
No 349
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=87.13 E-value=0.55 Score=36.20 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=13.7
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-+-|-||+||||+|-.+
T Consensus 30 v~sgKGGvGKTTvA~~L 46 (349)
T 3ug7_A 30 MFGGKGGVGKTTMSAAT 46 (349)
T ss_dssp EEECSSSTTHHHHHHHH
T ss_pred EEeCCCCccHHHHHHHH
Confidence 44499999999998753
No 350
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=87.08 E-value=0.31 Score=35.76 Aligned_cols=17 Identities=35% Similarity=0.514 Sum_probs=14.2
Q ss_pred ceEe---cCCCcHHHHHHhh
Q 046733 87 VIVG---IGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvG---mGGiGKTTLA~~V 103 (106)
.|++ -||+||||+|-.+
T Consensus 38 ~v~~~s~KGGvGKTT~a~nL 57 (298)
T 2oze_A 38 VILNNYFKGGVGKSKLSTMF 57 (298)
T ss_dssp EEEECCSSSSSSHHHHHHHH
T ss_pred EEEeccCCCCchHHHHHHHH
Confidence 7776 8999999998754
No 351
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=86.99 E-value=0.65 Score=34.13 Aligned_cols=18 Identities=44% Similarity=0.549 Sum_probs=16.2
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||...+.
T Consensus 28 ~vvG~~~~GKSTlln~l~ 45 (315)
T 1jwy_B 28 VVVGSQSSGKSSVLENIV 45 (315)
T ss_dssp EEEECSSSSHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHH
Confidence 899999999999998763
No 352
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=86.98 E-value=0.11 Score=39.99 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.++++
T Consensus 64 ~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 64 AFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEESHHHHHHHHTHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 899999999999998875
No 353
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=86.86 E-value=0.31 Score=35.15 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=16.2
Q ss_pred CcceEecCCCcHHHHHHhh
Q 046733 85 DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~V 103 (106)
++.|+|-+|+|||+|....
T Consensus 15 KivlvGd~~VGKTsLi~r~ 33 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRF 33 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHH
Confidence 3579999999999999864
No 354
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=86.81 E-value=0.29 Score=37.60 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=15.4
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|..|+||||||..+
T Consensus 126 ~I~G~~GsGKTtla~~l 142 (343)
T 1v5w_A 126 EAFGEFRTGKTQLSHTL 142 (343)
T ss_dssp EEECCTTCTHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 88899999999999864
No 355
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=86.78 E-value=0.55 Score=36.61 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=30.8
Q ss_pred ceeecchhHHHHHHHHhcCCCC--CcceEecCCCcHHHHHHhhhc
Q 046733 63 FAYGRDGDRNKIINRLSALNDV--DTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 63 ~vvGrd~~~~~lv~~L~~~~~~--~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
.++|......++.+.+..-... .+-|.|-.|+||+++|+.++.
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHH
Confidence 5677777777776666432222 347889999999999998863
No 356
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=86.57 E-value=0.26 Score=35.60 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=13.3
Q ss_pred ceE-ecCCCcHHHHHHhh
Q 046733 87 VIV-GIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~Iv-GmGGiGKTTLA~~V 103 (106)
.|+ +-||+||||+|-.+
T Consensus 31 ~v~s~kGGvGKTT~a~~L 48 (267)
T 3k9g_A 31 TIASIKGGVGKSTSAIIL 48 (267)
T ss_dssp EECCSSSSSCHHHHHHHH
T ss_pred EEEeCCCCchHHHHHHHH
Confidence 444 77999999998754
No 357
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=86.30 E-value=0.35 Score=38.33 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=15.2
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|..|+||||||..+
T Consensus 204 ii~G~pg~GKT~lal~i 220 (444)
T 2q6t_A 204 IIAARPAMGKTAFALTI 220 (444)
T ss_dssp EEEECTTSCHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHH
Confidence 78899999999999864
No 358
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=86.16 E-value=0.33 Score=37.19 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=16.2
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|+|||||...+.
T Consensus 171 ~lvG~~gvGKSTLin~L~ 188 (357)
T 2e87_A 171 VIAGHPNVGKSTLLKALT 188 (357)
T ss_dssp EEECSTTSSHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999998753
No 359
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=86.07 E-value=0.72 Score=34.65 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=16.5
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 123 v~~vG~~nvGKSsliN~l~ 141 (282)
T 1puj_A 123 ALIIGIPNVGKSTLINRLA 141 (282)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCchHHHHHHHh
Confidence 3899999999999988753
No 360
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=86.03 E-value=0.25 Score=41.19 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=15.3
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|.|||||.+.+
T Consensus 352 aIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 352 AVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEECSTTSSHHHHHTTT
T ss_pred EEEeeCCCCHHHHHHHH
Confidence 89999999999999754
No 361
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=86.02 E-value=0.29 Score=35.57 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=13.6
Q ss_pred ceE-ecCCCcHHHHHHhh
Q 046733 87 VIV-GIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~Iv-GmGGiGKTTLA~~V 103 (106)
.|+ +-||+||||+|-.+
T Consensus 22 ~v~s~kGGvGKTT~a~nL 39 (262)
T 2ph1_A 22 AVMSGKGGVGKSTVTALL 39 (262)
T ss_dssp EEECSSSCTTHHHHHHHH
T ss_pred EEEcCCCCCCHHHHHHHH
Confidence 555 77999999998754
No 362
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=86.02 E-value=0.43 Score=37.00 Aligned_cols=17 Identities=29% Similarity=0.514 Sum_probs=13.9
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-+-|-||+||||+|-.+
T Consensus 20 ~~sgkGGvGKTt~a~~l 36 (334)
T 3iqw_A 20 FVGGKGGVGKTTTSCSL 36 (334)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEeCCCCccHHHHHHHH
Confidence 45599999999998753
No 363
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=85.86 E-value=0.35 Score=37.24 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=16.2
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
..|+|..|.|||||++.+
T Consensus 38 ~~i~G~~G~GKs~~~~~~ 55 (392)
T 4ag6_A 38 WTILAKPGAGKSFTAKML 55 (392)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHH
Confidence 389999999999999875
No 364
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=85.77 E-value=0.41 Score=35.08 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=15.1
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|..|.||||||..+
T Consensus 20 li~G~SGaGKStlal~L 36 (181)
T 3tqf_A 20 LITGEANIGKSELSLAL 36 (181)
T ss_dssp EEEESSSSSHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHH
Confidence 78899999999999764
No 365
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=85.67 E-value=0.52 Score=39.08 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=21.4
Q ss_pred hHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHhhh
Q 046733 70 DRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 70 ~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~Vy 104 (106)
+....+..+.. ..+ -|.|.+|.||||++..+.
T Consensus 193 ~Q~~Av~~~~~---~~~~~I~G~pGTGKTt~i~~l~ 225 (574)
T 3e1s_A 193 EQASVLDQLAG---HRLVVLTGGPGTGKSTTTKAVA 225 (574)
T ss_dssp HHHHHHHHHTT---CSEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHh---CCEEEEEcCCCCCHHHHHHHHH
Confidence 33444444432 234 888999999999988753
No 366
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=85.61 E-value=0.41 Score=34.99 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=16.2
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 158 i~i~G~~~~GKssli~~~~ 176 (332)
T 2wkq_A 158 CVVVGDGAVGKTCLLISYT 176 (332)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHH
Confidence 3899999999999997653
No 367
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=85.51 E-value=0.51 Score=36.01 Aligned_cols=17 Identities=29% Similarity=0.514 Sum_probs=13.6
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-+-|-||+||||+|-.+
T Consensus 23 v~sgkGGvGKTTva~~L 39 (329)
T 2woo_A 23 FVGGKGGVGKTTTSCSL 39 (329)
T ss_dssp EEECSSSSSHHHHHHHH
T ss_pred EEeCCCCCcHHHHHHHH
Confidence 44499999999998753
No 368
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.36 E-value=0.23 Score=44.99 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=18.4
Q ss_pred cceEecCCCcHHHHHHhhhcC
Q 046733 86 TVIVGIGGLGKIVVWKNIYWF 106 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy~~ 106 (106)
+.|||..|.|||||+++++-|
T Consensus 1108 vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1108 LALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEECSTTSSTTSHHHHHTTS
T ss_pred EEEECCCCChHHHHHHHHhcC
Confidence 499999999999999988643
No 369
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=85.24 E-value=0.37 Score=43.49 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=17.4
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
.|||..|.|||||++.++-
T Consensus 1063 ~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A 1063 ALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp EEECSSSTTHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 9999999999999998753
No 370
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=84.88 E-value=0.43 Score=36.37 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=15.9
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|+|||||...+.
T Consensus 169 ~ivG~~~vGKSsLl~~l~ 186 (329)
T 3o47_A 169 LMVGLDAAGKTTILYKLK 186 (329)
T ss_dssp EEEESTTSSHHHHHHHTC
T ss_pred EEECCCCccHHHHHHHHh
Confidence 888999999999998753
No 371
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=84.61 E-value=0.53 Score=38.83 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=16.1
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
..|+|..|+|||||++.+
T Consensus 154 ~~i~G~sGvGKTtL~~~l 171 (473)
T 1sky_E 154 IGLFGGAGVGKTVLIQEL 171 (473)
T ss_dssp EEEECCSSSCHHHHHHHH
T ss_pred EEEECCCCCCccHHHHHH
Confidence 499999999999999854
No 372
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=84.54 E-value=0.78 Score=35.87 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=16.1
Q ss_pred Cc-ceEecCCCcHHHHHHhh
Q 046733 85 DT-VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~-~IvGmGGiGKTTLA~~V 103 (106)
++ -|.|..|+||||||..+
T Consensus 47 ~LiiIaG~pG~GKTt~al~i 66 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNM 66 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHH
Confidence 44 78899999999999865
No 373
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=84.36 E-value=0.48 Score=38.00 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=15.0
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|.+|+||||||..+
T Consensus 201 iIaG~pG~GKTtlal~i 217 (444)
T 3bgw_A 201 LIAARPSMGKTAFALKQ 217 (444)
T ss_dssp EEEECSSSSHHHHHHHH
T ss_pred EEEeCCCCChHHHHHHH
Confidence 77799999999999764
No 374
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=84.24 E-value=0.34 Score=38.88 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=16.2
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 161 gLVG~~gAGKSTLL~~Ls 178 (416)
T 1udx_A 161 GLVGYPNAGKSSLLAAMT 178 (416)
T ss_dssp EEECCGGGCHHHHHHHHC
T ss_pred EEECCCCCcHHHHHHHHH
Confidence 799999999999998764
No 375
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=84.16 E-value=0.55 Score=34.97 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=16.4
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.++|..|+|||||...+.
T Consensus 102 v~~vG~~~vGKSslin~l~ 120 (262)
T 3cnl_A 102 VLIVGVPNTGKSTIINKLK 120 (262)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred eEEeCCCCCCHHHHHHHHh
Confidence 3889999999999998754
No 376
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=84.14 E-value=0.5 Score=37.73 Aligned_cols=19 Identities=37% Similarity=0.571 Sum_probs=16.7
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||-+.+-
T Consensus 23 vgiVG~pnaGKSTL~n~Lt 41 (392)
T 1ni3_A 23 TGIVGMPNVGKSTFFRAIT 41 (392)
T ss_dssp EEEEECSSSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3999999999999998753
No 377
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=84.08 E-value=0.35 Score=40.31 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=16.3
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+-
T Consensus 49 aIvG~nGsGKSTLL~~I~ 66 (608)
T 3szr_A 49 AVIGDQSSGKSSVLEALS 66 (608)
T ss_dssp ECCCCTTSCHHHHHHHHH
T ss_pred EEECCCCChHHHHHHHHh
Confidence 899999999999998763
No 378
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=83.95 E-value=0.44 Score=42.56 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 465 ~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 465 GICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999874
No 379
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=83.92 E-value=0.5 Score=42.78 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=16.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|||..|.|||||++++.
T Consensus 448 aivG~sGsGKSTll~ll~ 465 (1321)
T 4f4c_A 448 ALVGSSGCGKSTIISLLL 465 (1321)
T ss_dssp EEEECSSSCHHHHHHHHT
T ss_pred EEEecCCCcHHHHHHHhc
Confidence 999999999999999864
No 380
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=83.85 E-value=0.69 Score=35.87 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=13.4
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-+-|-||+||||+|-.+
T Consensus 22 v~sgKGGvGKTTvaanL 38 (354)
T 2woj_A 22 FVGGKGGVGKTTSSCSI 38 (354)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEeCCCCCcHHHHHHHH
Confidence 33499999999998753
No 381
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=83.64 E-value=0.62 Score=33.86 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=16.5
Q ss_pred cceEecC---------CCcHHHHHHhhh
Q 046733 86 TVIVGIG---------GLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmG---------GiGKTTLA~~Vy 104 (106)
+.|+|.. |+|||||...+.
T Consensus 22 i~lvG~~~~~~~~~~~~vGKSsLi~~l~ 49 (255)
T 3c5h_A 22 ISVVGLSGTEKEKGQCGIGKSCLCNRFV 49 (255)
T ss_dssp EEEEESCCCTTTTTTCCCSHHHHHHHHH
T ss_pred EEEECCCccccccCCCCcCHHHHHHHHH
Confidence 3899999 999999998764
No 382
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=83.61 E-value=0.52 Score=36.86 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=16.1
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||...+.
T Consensus 183 ~lvG~~naGKSTLln~L~ 200 (364)
T 2qtf_A 183 GIVGYTNSGKTSLFNSLT 200 (364)
T ss_dssp EEECBTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 799999999999998764
No 383
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=83.54 E-value=0.13 Score=35.29 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=15.6
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+.|+|..|+|||||...+
T Consensus 36 i~vvG~~~~GKSsli~~l 53 (199)
T 3l0i_B 36 LLLIGDSGVGKSCLLLRF 53 (199)
T ss_dssp EEEECCTTSCCTTTTTSS
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 389999999999998764
No 384
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.18 E-value=0.59 Score=36.78 Aligned_cols=17 Identities=29% Similarity=0.182 Sum_probs=15.1
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|..|+||||||..+
T Consensus 78 ~I~G~pGsGKTtlal~l 94 (366)
T 1xp8_A 78 EIYGPESGGKTTLALAI 94 (366)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEEcCCCCChHHHHHHH
Confidence 88899999999999754
No 385
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=83.17 E-value=0.82 Score=36.00 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=16.2
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|+|||||...+.
T Consensus 179 ~lvG~~nvGKSSLin~l~ 196 (436)
T 2hjg_A 179 CLIGRPNVGKSSLVNAML 196 (436)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHh
Confidence 899999999999998764
No 386
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=82.79 E-value=0.52 Score=42.56 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=16.7
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|||..|.|||||++.+.
T Consensus 420 ~ivG~sGsGKSTl~~ll~ 437 (1284)
T 3g5u_A 420 ALVGNSGCGKSTTVQLMQ 437 (1284)
T ss_dssp EEECCSSSSHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 999999999999999864
No 387
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=82.28 E-value=0.66 Score=35.79 Aligned_cols=19 Identities=26% Similarity=0.744 Sum_probs=17.6
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
.|+|..|.|||||-.+||+
T Consensus 29 vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 29 AIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEECTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 8999999999999999875
No 388
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=82.09 E-value=0.52 Score=36.40 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=13.9
Q ss_pred ceE-ecCCCcHHHHHHhh
Q 046733 87 VIV-GIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~Iv-GmGGiGKTTLA~~V 103 (106)
.|+ |-||+||||+|-.+
T Consensus 147 av~s~KGGvGKTT~a~nL 164 (373)
T 3fkq_A 147 IFTSPCGGVGTSTVAAAC 164 (373)
T ss_dssp EEECSSTTSSHHHHHHHH
T ss_pred EEECCCCCChHHHHHHHH
Confidence 666 58999999998753
No 389
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=82.04 E-value=0.61 Score=37.66 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=16.2
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.++|.+|+|||||...+.
T Consensus 45 ~lvG~~~vGKSSLl~~l~ 62 (535)
T 3dpu_A 45 HLIGDGMAGKTSLLKQLI 62 (535)
T ss_dssp EEESSSCSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999998753
No 390
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=81.78 E-value=0.54 Score=36.34 Aligned_cols=17 Identities=29% Similarity=0.306 Sum_probs=13.5
Q ss_pred ceE-ecCCCcHHHHHHhh
Q 046733 87 VIV-GIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~Iv-GmGGiGKTTLA~~V 103 (106)
.|+ |-||+||||+|-.+
T Consensus 112 av~s~KGGvGKTT~a~nL 129 (398)
T 3ez2_A 112 FISNLKGGVSKTVSTVSL 129 (398)
T ss_dssp EECCSSSSSSHHHHHHHH
T ss_pred EEEeCCCCccHHHHHHHH
Confidence 555 78999999998753
No 391
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=81.65 E-value=0.72 Score=36.60 Aligned_cols=17 Identities=12% Similarity=-0.033 Sum_probs=14.9
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|..|+||||||-.+
T Consensus 32 eI~G~pGsGKTtL~Lq~ 48 (333)
T 3io5_A 32 ILAGPSKSFKSNFGLTM 48 (333)
T ss_dssp EEEESSSSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 78899999999998654
No 392
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=81.46 E-value=0.78 Score=33.54 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=15.8
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|-|+.|.||||+|+.+
T Consensus 18 ~i~g~~gsGk~~i~~~l 34 (223)
T 3hdt_A 18 TIEREYGSGGRIVGKKL 34 (223)
T ss_dssp EEEECTTSCHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHH
Confidence 89999999999999975
No 393
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=81.42 E-value=0.55 Score=37.60 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=16.0
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|-|.-|+||||+++.+.
T Consensus 53 t~EG~dGsGKTT~~~~La 70 (376)
T 1of1_A 53 YIDGPHGMGKTTTTQLLV 70 (376)
T ss_dssp EECSSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 777999999999999874
No 394
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=81.26 E-value=0.56 Score=37.53 Aligned_cols=17 Identities=6% Similarity=0.059 Sum_probs=15.0
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|..|+||||||..+
T Consensus 246 li~G~pG~GKT~lal~~ 262 (503)
T 1q57_A 246 MVTSGSGMVMSTFVRQQ 262 (503)
T ss_dssp EEEESSCHHHHHHHHHH
T ss_pred EEeecCCCCchHHHHHH
Confidence 77799999999999764
No 395
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=81.21 E-value=0.41 Score=42.76 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|.|||||.+.+.
T Consensus 703 aIiGpNGSGKSTLLklLa 720 (986)
T 2iw3_A 703 AVIGPNGAGKSTLINVLT 720 (986)
T ss_dssp EECSCCCHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999864
No 396
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=80.96 E-value=1.3 Score=33.72 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=16.5
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|+|||||...+.
T Consensus 34 I~vvG~~~~GKSSLln~L~ 52 (353)
T 2x2e_A 34 IAVVGGQSAGKSSVLENFV 52 (353)
T ss_dssp EEEECBTTSSHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3899999999999998753
No 397
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=80.68 E-value=1 Score=35.09 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=16.8
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.++|..|+|||||...+.
T Consensus 165 i~~vG~~nvGKStliN~L~ 183 (369)
T 3ec1_A 165 VYVVGCTNVGKSTFINRII 183 (369)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCchHHHHHHHH
Confidence 4899999999999998765
No 398
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=80.66 E-value=0.75 Score=36.45 Aligned_cols=18 Identities=33% Similarity=0.595 Sum_probs=16.2
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+.|+|..|+|||||...+
T Consensus 26 V~lvG~~nvGKSTL~n~l 43 (456)
T 4dcu_A 26 VAIVGRPNVGKSTIFNRI 43 (456)
T ss_dssp EEEECSSSSSHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 499999999999999865
No 399
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=80.64 E-value=0.83 Score=35.63 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=15.2
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|..|+||||||..+
T Consensus 148 l~~G~sG~GKSt~a~~l 164 (314)
T 1ko7_A 148 LITGDSGIGKSETALEL 164 (314)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHH
Confidence 78899999999999764
No 400
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=80.58 E-value=1.2 Score=34.78 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=16.7
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.++|..|+|||||...+.
T Consensus 163 i~~vG~~nvGKStliN~L~ 181 (368)
T 3h2y_A 163 VYVVGCTNVGKSTFINRMI 181 (368)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHH
Confidence 4899999999999998764
No 401
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=80.43 E-value=0.6 Score=38.92 Aligned_cols=14 Identities=36% Similarity=0.612 Sum_probs=13.4
Q ss_pred ceEecCCCcHHHHH
Q 046733 87 VIVGIGGLGKIVVW 100 (106)
Q Consensus 87 ~IvGmGGiGKTTLA 100 (106)
.|+|..|.|||||.
T Consensus 48 ~liGpNGaGKSTLl 61 (670)
T 3ux8_A 48 VLTGLSGSGKSSLA 61 (670)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCCHHHHh
Confidence 99999999999996
No 402
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=80.27 E-value=1.4 Score=36.11 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=22.0
Q ss_pred HHHHHHhcCC-CCCcceEecCCCcHHHHHHhh
Q 046733 73 KIINRLSALN-DVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 73 ~lv~~L~~~~-~~~~~IvGmGGiGKTTLA~~V 103 (106)
++++.|.--. ..+..|+|..|+|||+|++.+
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~I 195 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEI 195 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHH
Confidence 4566664322 224499999999999999765
No 403
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=80.16 E-value=2.1 Score=32.19 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=13.9
Q ss_pred ceEec-CCCcHHHHHHhh
Q 046733 87 VIVGI-GGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGm-GGiGKTTLA~~V 103 (106)
.|.+. ||.||||+|-.+
T Consensus 108 ~vts~kgG~GKTtva~nL 125 (299)
T 3cio_A 108 MITGATPDSGKTFVSSTL 125 (299)
T ss_dssp EEEESSSSSCHHHHHHHH
T ss_pred EEECCCCCCChHHHHHHH
Confidence 77775 899999998753
No 404
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=79.59 E-value=1.5 Score=31.23 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.6
Q ss_pred ceEecCCCcHHHHHHh
Q 046733 87 VIVGIGGLGKIVVWKN 102 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~ 102 (106)
.|+|..|.||||+...
T Consensus 80 ~i~g~TGsGKTt~~~~ 95 (235)
T 3llm_A 80 IIRGATGCGKTTQVPQ 95 (235)
T ss_dssp EEECCTTSSHHHHHHH
T ss_pred EEEeCCCCCcHHhHHH
Confidence 8889999999986653
No 405
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=79.57 E-value=0.78 Score=35.64 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.8
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..++|||||...+.
T Consensus 162 ~lvG~~nvGKSTLln~L~ 179 (342)
T 1lnz_A 162 GLVGFPSVGKSTLLSVVS 179 (342)
T ss_dssp EEESSTTSSHHHHHHHSE
T ss_pred eeeCCCCCCHHHHHHHHH
Confidence 699999999999998753
No 406
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=79.41 E-value=0.86 Score=36.56 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=17.1
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
.+.|+|..|+|||||...+.
T Consensus 24 kvgIVG~pnvGKSTL~n~Lt 43 (396)
T 2ohf_A 24 KIGIVGLPNVGKSTFFNVLT 43 (396)
T ss_dssp CEEEECCSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 34999999999999988753
No 407
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=79.16 E-value=0.87 Score=37.77 Aligned_cols=17 Identities=35% Similarity=0.433 Sum_probs=14.5
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|..|.||||++..+
T Consensus 168 vi~G~pGTGKTt~l~~l 184 (608)
T 1w36_D 168 VISGGPGTGKTTTVAKL 184 (608)
T ss_dssp EEECCTTSTHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHH
Confidence 77899999999987654
No 408
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=79.05 E-value=0.84 Score=39.85 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=29.9
Q ss_pred CceeecchhHHHHHHHHhcCC---C----C------CcceEecCCCcHHHHHHhhh
Q 046733 62 KFAYGRDGDRNKIINRLSALN---D----V------DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~---~----~------~~~IvGmGGiGKTTLA~~Vy 104 (106)
.++.|.++.++.|.+.+.-.- . . .+-++|..|.|||.||++|-
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA 532 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 532 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHH
Confidence 467788888888766543211 0 0 12677999999999999874
No 409
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=78.45 E-value=1 Score=34.34 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|.|||||...+.
T Consensus 37 I~vvG~~~sGKSSLln~l~ 55 (360)
T 3t34_A 37 IAVVGGQSSGKSSVLESIV 55 (360)
T ss_dssp EEEECBTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 3899999999999998764
No 410
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=78.44 E-value=1.3 Score=34.33 Aligned_cols=44 Identities=20% Similarity=0.150 Sum_probs=30.2
Q ss_pred CceeecchhHHHHHHHHhc--CCCCCcceEecCCCcHHHHHHhhhc
Q 046733 62 KFAYGRDGDRNKIINRLSA--LNDVDTVIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~--~~~~~~~IvGmGGiGKTTLA~~Vy~ 105 (106)
..++|.......+...+.. .....+-|.|-.|.||+++|+.++.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~ 174 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHR 174 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHH
Confidence 3567777666666655532 2222347889999999999998864
No 411
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=77.99 E-value=0.48 Score=41.52 Aligned_cols=16 Identities=25% Similarity=0.516 Sum_probs=15.1
Q ss_pred ceEecCCCcHHHHHHh
Q 046733 87 VIVGIGGLGKIVVWKN 102 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~ 102 (106)
.|+|..|.|||||++.
T Consensus 527 ~I~G~nGSGKSTLl~~ 542 (842)
T 2vf7_A 527 SVTGVSGSGKSTLVSQ 542 (842)
T ss_dssp EEECCTTSSHHHHCCC
T ss_pred EEEcCCCcCHHHHHHH
Confidence 8999999999999985
No 412
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=77.32 E-value=1 Score=38.93 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=15.8
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|.|||||.+.+
T Consensus 580 ~I~GpNGsGKSTlLr~i 596 (765)
T 1ewq_A 580 LITGPNMAGKSTFLRQT 596 (765)
T ss_dssp EEESCSSSSHHHHHHHH
T ss_pred EEECCCCCChHHHHHHH
Confidence 89999999999999875
No 413
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=77.23 E-value=1.2 Score=36.65 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=17.4
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
++.|+|..|.|||||...+.
T Consensus 15 ~I~IiG~~~aGKTTL~~~Ll 34 (529)
T 2h5e_A 15 TFAIISHPDAGKTTITEKVL 34 (529)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 46899999999999998764
No 414
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=77.01 E-value=1.3 Score=34.62 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=14.9
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|..|+||||||-.+
T Consensus 151 li~G~sG~GKStlal~l 167 (312)
T 1knx_A 151 LLTGRSGIGKSECALDL 167 (312)
T ss_dssp EEEESSSSSHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHH
Confidence 77899999999999764
No 415
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=76.86 E-value=1.2 Score=36.59 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=17.0
Q ss_pred CcceEecCCCcHHHHHHhh
Q 046733 85 DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~V 103 (106)
++.|+|..|.|||||...+
T Consensus 15 ~IaIiG~~~aGKTTL~~~L 33 (528)
T 3tr5_A 15 TFAIISHPDAGKTTLTEKL 33 (528)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4589999999999999876
No 416
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=76.12 E-value=0.91 Score=40.66 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=15.8
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|.|||||++.+
T Consensus 672 aI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 672 SVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp EEECSTTSSHHHHHTTT
T ss_pred EEEcCCCCCHHHHHHHH
Confidence 89999999999999874
No 417
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=76.00 E-value=1.3 Score=35.14 Aligned_cols=17 Identities=18% Similarity=0.550 Sum_probs=15.6
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|.+|+|||||...+
T Consensus 326 ~lvG~~nvGKSsLl~~l 342 (497)
T 3lvq_E 326 LMLGLDAAGKTTILYKL 342 (497)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHH
Confidence 89999999999998865
No 418
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=75.84 E-value=1.2 Score=38.60 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=15.9
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|.|||||.+.+
T Consensus 611 ~ItGpNGsGKSTlLr~i 627 (800)
T 1wb9_A 611 IITGPNMGGKSTYMRQT 627 (800)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCChHHHHHHH
Confidence 89999999999999975
No 419
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=75.69 E-value=1.3 Score=36.75 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=21.2
Q ss_pred ecchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHh
Q 046733 66 GRDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKN 102 (106)
Q Consensus 66 Grd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~ 102 (106)
..++.....+..++. ..+ -|.|..|.||||++..
T Consensus 180 ~ln~~Q~~av~~~l~---~~~~li~GppGTGKT~~~~~ 214 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSAT 214 (624)
T ss_dssp CCCHHHHHHHHHHHT---CSEEEEECCTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHhc---CCCeEEECCCCCCHHHHHHH
Confidence 344444444444333 234 7889999999997654
No 420
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=75.44 E-value=2.6 Score=31.18 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=13.5
Q ss_pred ceEe-cCCCcHHHHHHhh
Q 046733 87 VIVG-IGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvG-mGGiGKTTLA~~V 103 (106)
.|.+ .||.||||+|-.+
T Consensus 86 ~vts~kgG~GKTt~a~nL 103 (271)
T 3bfv_A 86 VITSEAPGAGKSTIAANL 103 (271)
T ss_dssp EEECSSTTSSHHHHHHHH
T ss_pred EEECCCCCCcHHHHHHHH
Confidence 7775 5999999998753
No 421
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=75.42 E-value=1.2 Score=35.71 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=16.6
Q ss_pred CcceEecCCCcHHHHHHhh
Q 046733 85 DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~V 103 (106)
++.|+|..+.|||||...+
T Consensus 35 ki~iiG~~~~GKSTLi~~L 53 (483)
T 3p26_A 35 SFVVLGHVDAGKSTLMGRL 53 (483)
T ss_dssp EEEEESCGGGTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4499999999999999765
No 422
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=74.81 E-value=0.6 Score=36.22 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=5.5
Q ss_pred ceE-ecCCCcHHHHHHhh
Q 046733 87 VIV-GIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~Iv-GmGGiGKTTLA~~V 103 (106)
.|+ |-||+||||+|-.+
T Consensus 115 av~s~KGGvGKTT~a~nL 132 (403)
T 3ez9_A 115 FVVNLKGGVSKTVSTVTL 132 (403)
T ss_dssp EECCC--------CHHHH
T ss_pred EEEcCCCCchHHHHHHHH
Confidence 555 88999999988653
No 423
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=74.45 E-value=0.87 Score=40.71 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=15.6
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|.|||||++.+
T Consensus 654 ~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 654 AVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp ECCBCTTSSHHHHHTTT
T ss_pred EEEcCCCCCHHHHHHHH
Confidence 88899999999999874
No 424
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=73.95 E-value=3.8 Score=30.68 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=13.4
Q ss_pred ceEe-cCCCcHHHHHHhh
Q 046733 87 VIVG-IGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvG-mGGiGKTTLA~~V 103 (106)
.|++ -||.||||+|-.+
T Consensus 96 ~vts~kgG~GKTtva~nL 113 (286)
T 3la6_A 96 MMTGVSPSIGMTFVCANL 113 (286)
T ss_dssp EEEESSSSSSHHHHHHHH
T ss_pred EEECCCCCCcHHHHHHHH
Confidence 6665 5999999998753
No 425
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=73.90 E-value=1.3 Score=43.28 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=15.9
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
-+||.||+||++|++.+-
T Consensus 1613 LLvGvgGsGkqSltrLaa 1630 (2695)
T 4akg_A 1613 MLIGASRTGKTILTRFVA 1630 (2695)
T ss_dssp EEECTTTSCHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHH
Confidence 689999999999999753
No 426
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=73.86 E-value=1.2 Score=38.61 Aligned_cols=19 Identities=11% Similarity=0.129 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..|.|||||+..+.
T Consensus 22 I~IiG~~~~GKTTL~~~Ll 40 (842)
T 1n0u_A 22 MSVIAHVDHGKSTLTDSLV 40 (842)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4999999999999998753
No 427
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=73.17 E-value=1.5 Score=34.60 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=16.1
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+.|+|..+.|||||...+
T Consensus 27 i~iiG~~~~GKSTLi~~L 44 (434)
T 1zun_B 27 FLTCGNVDDGKSTLIGRL 44 (434)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHH
Confidence 399999999999999865
No 428
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=73.10 E-value=1.8 Score=35.66 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=16.4
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|+|||||...+.
T Consensus 69 ~vvG~~n~GKSTLIN~Ll 86 (550)
T 2qpt_A 69 LVAGQYSTGKTSFIQYLL 86 (550)
T ss_dssp EEEEBTTSCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999998764
No 429
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=72.46 E-value=1.9 Score=34.88 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=16.1
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+.|+|..|+|||||...+
T Consensus 227 V~ivG~~nvGKSSLln~L 244 (462)
T 3geh_A 227 VAIVGRPNVGKSSLLNAW 244 (462)
T ss_dssp EEEEECTTSSHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 389999999999999875
No 430
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=72.16 E-value=0.67 Score=37.40 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=17.4
Q ss_pred ceEecCCCcHHHHHHhhhc
Q 046733 87 VIVGIGGLGKIVVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy~ 105 (106)
.|+|..|.|||||..++++
T Consensus 64 ~i~G~NGaGKS~lleAl~~ 82 (517)
T 4ad8_A 64 AFTGETGAGKSIIVDALGL 82 (517)
T ss_dssp EEEESHHHHHHHHTHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 8999999999999998864
No 431
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=71.77 E-value=1.9 Score=33.67 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=14.3
Q ss_pred ceEecCCCcHHHHHHh
Q 046733 87 VIVGIGGLGKIVVWKN 102 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~ 102 (106)
-+.|.|+.||||+.+.
T Consensus 36 LlLG~geSGKST~~KQ 51 (353)
T 1cip_A 36 LLLGAGESGKSTIVKQ 51 (353)
T ss_dssp EEECSTTSSHHHHHHH
T ss_pred EEEcCCCCCchhHHHH
Confidence 6779999999999875
No 432
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=71.48 E-value=2.8 Score=41.81 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=16.0
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
-+||.||+||++|++.+-
T Consensus 1650 LLVGvgGSGkqSLtrLAa 1667 (3245)
T 3vkg_A 1650 LLIGVSGGGKSVLSRFVA 1667 (3245)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEecCCCCcHHHHHHHHH
Confidence 689999999999999753
No 433
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=71.15 E-value=2.6 Score=34.91 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=20.4
Q ss_pred HHHHHhcC-CCCCcceEecCCCcHHHHHHhh
Q 046733 74 IINRLSAL-NDVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 74 lv~~L~~~-~~~~~~IvGmGGiGKTTLA~~V 103 (106)
+++.|.-- ...+..|+|-.|+|||+|++.+
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i 173 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMEL 173 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHH
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHH
Confidence 45555321 2224499999999999999754
No 434
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=70.95 E-value=1.8 Score=38.20 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=15.9
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|.|||||.+.+
T Consensus 666 ~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 666 IITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 89999999999999976
No 435
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=70.92 E-value=3.5 Score=34.64 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=16.3
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
+|+|..++|||||...+.
T Consensus 42 aivG~pnvGKStLiN~L~ 59 (592)
T 1f5n_A 42 AIVGLYRTGKSYLMNKLA 59 (592)
T ss_dssp EEEEBTTSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHhHc
Confidence 999999999999988764
No 436
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=69.50 E-value=2.1 Score=38.16 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=15.8
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|.|||||.+.+
T Consensus 793 ~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 793 LVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCChHHHHHHH
Confidence 89999999999999875
No 437
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=69.32 E-value=2.5 Score=32.78 Aligned_cols=17 Identities=29% Similarity=0.620 Sum_probs=14.9
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|+|..|.|||++.+.+
T Consensus 57 ~i~G~tGsGKs~~~~~l 73 (437)
T 1e9r_A 57 LVNGATGTGKSVLLREL 73 (437)
T ss_dssp EEEECTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 89999999999998653
No 438
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=69.05 E-value=2.2 Score=34.68 Aligned_cols=16 Identities=31% Similarity=0.667 Sum_probs=13.2
Q ss_pred ceEecCCCcHHHHHHh
Q 046733 87 VIVGIGGLGKIVVWKN 102 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~ 102 (106)
-+.|.||+||||+|-.
T Consensus 331 ~~~~~~g~Gktt~a~~ 346 (589)
T 1ihu_A 331 MLMGKGGVGKTTMAAA 346 (589)
T ss_dssp EEECSTTSSHHHHHHH
T ss_pred EEecCCCCChhhHHHH
Confidence 4459999999999764
No 439
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=68.96 E-value=2.5 Score=34.50 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=15.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
-|.|.+|.||||+.+...
T Consensus 165 ~I~G~aGsGKTt~I~~~~ 182 (446)
T 3vkw_A 165 LVDGVPGCGKTKEILSRV 182 (446)
T ss_dssp EEEECTTSCHHHHHHHHC
T ss_pred EEEcCCCCCHHHHHHHHh
Confidence 778999999999987653
No 440
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=68.93 E-value=2 Score=34.82 Aligned_cols=18 Identities=33% Similarity=0.470 Sum_probs=15.9
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+.|+|..|+|||||...+
T Consensus 236 V~ivG~~nvGKSSLln~L 253 (476)
T 3gee_A 236 TVIAGKPNAGKSTLLNTL 253 (476)
T ss_dssp EEEECCTTSSHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 389999999999998865
No 441
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=68.73 E-value=3.1 Score=34.55 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=16.4
Q ss_pred CcceEecCCCcHHHHHHhh
Q 046733 85 DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~V 103 (106)
+..|+|-.|+|||+|++.+
T Consensus 167 r~gIfgg~GvGKT~L~~~l 185 (498)
T 1fx0_B 167 KIGLFGGAGVGKTVLIMEL 185 (498)
T ss_dssp CEEEEECSSSSHHHHHHHH
T ss_pred eEEeecCCCCCchHHHHHH
Confidence 4599999999999999754
No 442
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=67.61 E-value=2.4 Score=36.59 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=20.6
Q ss_pred cchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHh
Q 046733 67 RDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKN 102 (106)
Q Consensus 67 rd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~ 102 (106)
.++.....+...+.. .+ -|.|.+|.||||++..
T Consensus 357 Ln~~Q~~Av~~~l~~---~~~lI~GppGTGKT~ti~~ 390 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSAT 390 (800)
T ss_dssp CCHHHHHHHHHHHTS---SEEEEECCTTSCHHHHHHH
T ss_pred CCHHHHHHHHHhccC---CeEEEEcCCCCCHHHHHHH
Confidence 344444444443332 34 7889999999987654
No 443
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=67.56 E-value=2.4 Score=34.30 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.4
Q ss_pred cceEecCCCcHHHHHH
Q 046733 86 TVIVGIGGLGKIVVWK 101 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~ 101 (106)
+-|.|..|.|||+.+-
T Consensus 25 ~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 25 LLVLAGAGSGKTRVLV 40 (647)
T ss_dssp EEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCHHHHHH
Confidence 3788999999998753
No 444
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=67.52 E-value=1.8 Score=38.30 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=15.6
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..|.|||||.+.+
T Consensus 677 ~ItGPNGaGKSTlLr~i 693 (918)
T 3thx_B 677 IITGPNMGGKSSYIKQV 693 (918)
T ss_dssp EEESCCCHHHHHHHHHH
T ss_pred EEECCCCCchHHHHHHH
Confidence 88999999999999875
No 445
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=66.54 E-value=3 Score=33.37 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=14.5
Q ss_pred ceEecCCCcHHHHHHh
Q 046733 87 VIVGIGGLGKIVVWKN 102 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~ 102 (106)
-+.|.|..||||+.+.
T Consensus 44 LLLG~geSGKSTi~KQ 59 (402)
T 1azs_C 44 LLLGAGESGKSTIVKQ 59 (402)
T ss_dssp EEEESTTSSHHHHHHH
T ss_pred EEecCCCCchhhHHHH
Confidence 7779999999999985
No 446
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=65.97 E-value=4 Score=33.56 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=16.2
Q ss_pred CcceEecCCCcHHHHHHhh
Q 046733 85 DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~V 103 (106)
+..|+|-.|+|||+|+..+
T Consensus 154 r~~Ifgg~G~GKt~Ll~~I 172 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQI 172 (469)
T ss_dssp BCCEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4499999999999988765
No 447
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=65.61 E-value=2.7 Score=40.39 Aligned_cols=18 Identities=22% Similarity=0.219 Sum_probs=15.7
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+-|+|..|+|||+||..+
T Consensus 1430 vll~GppGtGKT~LA~al 1447 (2050)
T 3cmu_A 1430 VEIYGPESSGKTTLTLQV 1447 (2050)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 388899999999999764
No 448
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=65.29 E-value=2.9 Score=32.57 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=16.5
Q ss_pred CcceEecCCCcHHHHHHhh
Q 046733 85 DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~V 103 (106)
++.|+|-.+.|||||...+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L 41 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANL 41 (370)
T ss_dssp EEEEEESTTSSHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3599999999999999864
No 449
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=64.79 E-value=2.5 Score=37.35 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=13.7
Q ss_pred ceEecCCCcHHHHHH
Q 046733 87 VIVGIGGLGKIVVWK 101 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~ 101 (106)
.|+|..|.|||||+.
T Consensus 614 ~I~G~SGSGKSTLl~ 628 (916)
T 3pih_A 614 CVTGVSGSGKSSLVM 628 (916)
T ss_dssp EEECSTTSSHHHHHH
T ss_pred EEEccCCCChhhhHH
Confidence 899999999999973
No 450
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=64.43 E-value=2.4 Score=35.52 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=13.3
Q ss_pred ceEecCCCcHHHHHH
Q 046733 87 VIVGIGGLGKIVVWK 101 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~ 101 (106)
-+.|..|.|||||+.
T Consensus 229 ~ffGlSGtGKTtLs~ 243 (529)
T 1j3b_A 229 VFFGLSGTGKTTLST 243 (529)
T ss_dssp EEEECTTSCHHHHTC
T ss_pred EEEccccCChhhHhh
Confidence 667999999999985
No 451
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=64.23 E-value=4.5 Score=33.36 Aligned_cols=19 Identities=21% Similarity=0.099 Sum_probs=16.4
Q ss_pred CcceEecCCCcHHHHHHhh
Q 046733 85 DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~V 103 (106)
+..|+|-.|+|||+|+..+
T Consensus 149 r~~Ifgg~G~GKt~L~~~I 167 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQI 167 (464)
T ss_dssp BCCEEEETTSCHHHHHHHH
T ss_pred EEEEecCCCCCchHHHHHH
Confidence 4499999999999998765
No 452
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=64.19 E-value=3.3 Score=32.73 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=16.0
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
.|+|..|+|||||...+.
T Consensus 199 ~ivG~~~vGKSslin~l~ 216 (456)
T 4dcu_A 199 CLIGRPNVGKSSLVNAML 216 (456)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHh
Confidence 889999999999998754
No 453
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=64.14 E-value=2.7 Score=35.19 Aligned_cols=15 Identities=27% Similarity=0.603 Sum_probs=13.2
Q ss_pred ceEecCCCcHHHHHH
Q 046733 87 VIVGIGGLGKIVVWK 101 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~ 101 (106)
-+.|..|.|||||+.
T Consensus 239 ~ffGlSGtGKTTLs~ 253 (532)
T 1ytm_A 239 IFFGLSGTGKTTLST 253 (532)
T ss_dssp EEECCTTSSHHHHHC
T ss_pred EEEecCCCCHHHHhh
Confidence 677999999999984
No 454
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=64.11 E-value=5.3 Score=34.04 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=21.4
Q ss_pred HHHHHhcCC-CCCcceEecCCCcHHHHHHhh
Q 046733 74 IINRLSALN-DVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 74 lv~~L~~~~-~~~~~IvGmGGiGKTTLA~~V 103 (106)
+++.|.--. ..+..|+|-.|+|||+|++.+
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~i 252 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQI 252 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHH
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHH
Confidence 466554322 224499999999999999865
No 455
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=64.03 E-value=2.8 Score=35.08 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=13.3
Q ss_pred ceEecCCCcHHHHHH
Q 046733 87 VIVGIGGLGKIVVWK 101 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~ 101 (106)
-+.|..|.|||||+.
T Consensus 217 ~ffGlSGtGKTTLs~ 231 (524)
T 1ii2_A 217 VFFGLSGTGKTTLSA 231 (524)
T ss_dssp EEECCTTSSHHHHHC
T ss_pred EEEccCCcchhhhhh
Confidence 677999999999974
No 456
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=63.72 E-value=2.8 Score=35.27 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=13.2
Q ss_pred ceEecCCCcHHHHHH
Q 046733 87 VIVGIGGLGKIVVWK 101 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~ 101 (106)
-+.|..|.|||||+.
T Consensus 245 lffGlSGtGKTTLs~ 259 (540)
T 2olr_A 245 VFFGLSGTGKTTLST 259 (540)
T ss_dssp EEECSTTSSHHHHHC
T ss_pred EEEccCCCCHHHHhc
Confidence 677999999999974
No 457
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=63.26 E-value=3.3 Score=35.73 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=20.6
Q ss_pred cchhHHHHHHHHhcCCCCCc-ceEecCCCcHHHHHHh
Q 046733 67 RDGDRNKIINRLSALNDVDT-VIVGIGGLGKIVVWKN 102 (106)
Q Consensus 67 rd~~~~~lv~~L~~~~~~~~-~IvGmGGiGKTTLA~~ 102 (106)
.++.....+..++. ..+ -|.|..|.|||+++..
T Consensus 361 Ln~~Q~~Av~~~l~---~~~~lI~GppGTGKT~~i~~ 394 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQ---RPLSLIQGPPGTGKTVTSAT 394 (802)
T ss_dssp CCHHHHHHHHHHTT---CSEEEEECSTTSSHHHHHHH
T ss_pred CCHHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHH
Confidence 34444444444432 234 7889999999987654
No 458
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=63.14 E-value=3.4 Score=34.13 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=15.1
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|..|.||||+.+.+
T Consensus 171 LIaG~TGSGKSt~L~~l 187 (512)
T 2ius_A 171 LVAGTTGSGASVGVNAM 187 (512)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 88899999999998764
No 459
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=62.86 E-value=3.5 Score=34.85 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=17.3
Q ss_pred CcceEecCCCcHHHHHHhhh
Q 046733 85 DTVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~Vy 104 (106)
++.|+|..|.|||||...+.
T Consensus 71 ~V~VvG~~naGKSSLlNaLl 90 (695)
T 2j69_A 71 RLLVLGDMKRGKSTFLNALI 90 (695)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 45999999999999998764
No 460
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=62.69 E-value=5.1 Score=33.04 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=16.4
Q ss_pred CcceEecCCCcHHHHHHhh
Q 046733 85 DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~V 103 (106)
+..|+|-.|+|||+|+..+
T Consensus 153 r~~Ifgg~G~GKt~L~~~I 171 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQI 171 (465)
T ss_dssp BCCEEECTTSCHHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHH
Confidence 4499999999999998764
No 461
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=62.12 E-value=3.8 Score=34.14 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.5
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..+.|||||...+.
T Consensus 170 V~ivG~~n~GKSTLin~Ll 188 (611)
T 3izq_1 170 FVVLGHVDAGKSTLMGRLL 188 (611)
T ss_dssp EEEECCSSSCHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
Confidence 4999999999999998753
No 462
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=61.65 E-value=3.7 Score=33.76 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=16.7
Q ss_pred CcceEecCCCcHHHHHHhh
Q 046733 85 DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~V 103 (106)
++.|+|-.+.|||||+-.+
T Consensus 33 NiaIiaHvdaGKTTLtE~l 51 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKL 51 (548)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHH
Confidence 3499999999999999865
No 463
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=61.46 E-value=4 Score=34.10 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=29.0
Q ss_pred CceeecchhHHHHHHHHhcCCC-----CCcceEecCCCcHHHHHHhh
Q 046733 62 KFAYGRDGDRNKIINRLSALND-----VDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 62 ~~vvGrd~~~~~lv~~L~~~~~-----~~~~IvGmGGiGKTTLA~~V 103 (106)
+ ++|.+.-+..|+-.|..... .++-|+|..|+ ||+||+.+
T Consensus 214 p-I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i 258 (506)
T 3f8t_A 214 P-LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHV 258 (506)
T ss_dssp C-STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHH
T ss_pred c-cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHH
Confidence 6 88988766665555554421 13488999999 99999988
No 464
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=60.91 E-value=4.7 Score=28.95 Aligned_cols=18 Identities=33% Similarity=0.135 Sum_probs=15.2
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+-|+|.-|.|||.+|..+
T Consensus 111 ~ll~~~tG~GKT~~a~~~ 128 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAA 128 (237)
T ss_dssp EEEEESSSTTHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHH
Confidence 478899999999998754
No 465
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=60.88 E-value=4.6 Score=29.41 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=16.1
Q ss_pred ceEecCCCcHH-HHHHhhhc
Q 046733 87 VIVGIGGLGKI-VVWKNIYW 105 (106)
Q Consensus 87 ~IvGmGGiGKT-TLA~~Vy~ 105 (106)
-|.|.-|+||| .|.+.+++
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n 43 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRR 43 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHH
Confidence 88999999999 77777654
No 466
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=60.55 E-value=3.8 Score=38.68 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=15.5
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
-|.|..|.|||+||..+.
T Consensus 1086 l~~G~~g~GKT~la~~~~ 1103 (1706)
T 3cmw_A 1086 EIYGPESSGKTTLTLQVI 1103 (1706)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEEcCCCCChHHHHHHHH
Confidence 467999999999999764
No 467
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=59.72 E-value=4.2 Score=33.73 Aligned_cols=17 Identities=29% Similarity=0.349 Sum_probs=15.6
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
.|+|..+.|||||...+
T Consensus 181 ~iiG~~d~GKSTLi~~L 197 (592)
T 3mca_A 181 VVTGHVDSGKSTMLGRI 197 (592)
T ss_dssp EEECCSSSTHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHH
Confidence 88999999999999765
No 468
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=59.40 E-value=4.1 Score=38.47 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=15.1
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|..|+||||||..+
T Consensus 736 lI~G~PG~GKTtLal~l 752 (1706)
T 3cmw_A 736 EIYGPESSGKTTLTLQV 752 (1706)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCcHHHHHHH
Confidence 77799999999999865
No 469
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=59.34 E-value=3.5 Score=36.07 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=13.7
Q ss_pred ceEecCCCcHHHHHH
Q 046733 87 VIVGIGGLGKIVVWK 101 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~ 101 (106)
.|.|..|+||+|||-
T Consensus 40 viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 40 VFTGVSGSGKSSLAF 54 (842)
T ss_dssp EEESSTTSSHHHHHT
T ss_pred EEECCCCCCHHHHHH
Confidence 778999999999995
No 470
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=59.14 E-value=4.6 Score=31.96 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=16.5
Q ss_pred CcceEecCCCcHHHHHHhh
Q 046733 85 DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~V 103 (106)
++.|+|..+.|||||...+
T Consensus 19 ~i~iiG~~d~GKSTL~~~L 37 (439)
T 3j2k_7 19 NVVFIGHVDAGKSTIGGQI 37 (439)
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 3499999999999998765
No 471
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=58.09 E-value=6.6 Score=33.58 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=20.0
Q ss_pred hhHHHHHHHHhcCCCCCcceEecCCCcHHHHHHh
Q 046733 69 GDRNKIINRLSALNDVDTVIVGIGGLGKIVVWKN 102 (106)
Q Consensus 69 ~~~~~lv~~L~~~~~~~~~IvGmGGiGKTTLA~~ 102 (106)
...+.|...|.... .+-|+|.-|.||||+...
T Consensus 97 ~q~~~i~~~l~~~~--~vii~gpTGSGKTtllp~ 128 (773)
T 2xau_A 97 AQRDEFLKLYQNNQ--IMVFVGETGSGKTTQIPQ 128 (773)
T ss_dssp GGHHHHHHHHHHCS--EEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHHHhCCC--eEEEECCCCCCHHHHHHH
Confidence 33455555553321 237889999999995543
No 472
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=56.84 E-value=4.7 Score=39.59 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=15.4
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+-++|..|.|||+||+.+
T Consensus 1270 vLL~GPpGtGKT~la~~~ 1287 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNA 1287 (2695)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 478899999999999654
No 473
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=56.78 E-value=5.6 Score=31.95 Aligned_cols=19 Identities=26% Similarity=0.128 Sum_probs=16.6
Q ss_pred cceEecCCCcHHHHHHhhh
Q 046733 86 TVIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~Vy 104 (106)
+.|+|..+.|||||...+.
T Consensus 22 I~iiG~~d~GKSTLi~~L~ 40 (482)
T 1wb1_A 22 LGIFGHIDHGKTTLSKVLT 40 (482)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHH
Confidence 4899999999999998764
No 474
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=56.11 E-value=1.6 Score=35.02 Aligned_cols=18 Identities=22% Similarity=0.387 Sum_probs=15.8
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+.|+|..|.|||||...+
T Consensus 37 I~IvG~~~vGKSTLin~L 54 (423)
T 3qq5_A 37 IVVAGRRNVGKSSFMNAL 54 (423)
T ss_dssp EEEECSCSTTTTTTTTSS
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 399999999999998764
No 475
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=55.19 E-value=7.7 Score=32.24 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=14.7
Q ss_pred CcceEecCCCcHHHHHH
Q 046733 85 DTVIVGIGGLGKIVVWK 101 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~ 101 (106)
+..|+|-.|+|||+||.
T Consensus 164 R~~Ifg~~g~GKT~Lal 180 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAI 180 (502)
T ss_dssp BCEEEECSSSCHHHHHH
T ss_pred EEEEECCCCCCchHHHH
Confidence 44999999999999963
No 476
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=54.78 E-value=4.7 Score=32.17 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=16.4
Q ss_pred CcceEecCCCcHHHHHHhh
Q 046733 85 DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~V 103 (106)
++.|+|..+.|||||...+
T Consensus 45 ~i~iiG~vd~GKSTLi~~L 63 (467)
T 1r5b_A 45 NIVFIGHVDAGKSTLGGNI 63 (467)
T ss_dssp EEEEEECGGGTHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHH
Confidence 3499999999999999764
No 477
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=54.74 E-value=5.4 Score=38.37 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=15.3
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|..|+||||||..+
T Consensus 387 lI~G~pGsGKTtLaLqi 403 (2050)
T 3cmu_A 387 EIYGPESSGKTTLTLQV 403 (2050)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHH
Confidence 78899999999999865
No 478
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=54.36 E-value=4.4 Score=34.45 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=20.8
Q ss_pred HHHHHhcC-CCCCcceEecCCCcHHHHHHhh
Q 046733 74 IINRLSAL-NDVDTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 74 lv~~L~~~-~~~~~~IvGmGGiGKTTLA~~V 103 (106)
+++.|.-- ...+..|+|-.|+|||+|++.+
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~i 247 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQL 247 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHH
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHH
Confidence 45555321 1223499999999999999864
No 479
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=53.99 E-value=14 Score=29.85 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=16.6
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
+|+|....||+||...++
T Consensus 71 sV~G~~~~GKStLLN~ll 88 (447)
T 3q5d_A 71 SVAGAFRKGKSFLMDFML 88 (447)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 999999999999998765
No 480
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=53.15 E-value=5.7 Score=33.48 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=16.0
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+.|+|-.+.|||||+-.+
T Consensus 16 i~IiaHvd~GKTTL~d~L 33 (709)
T 4fn5_A 16 IGICAHVDAGKTTTTERV 33 (709)
T ss_dssp EEEECCSSSCHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 489999999999999864
No 481
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=52.39 E-value=6 Score=35.48 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=13.6
Q ss_pred ceEecCCCcHHHHHH
Q 046733 87 VIVGIGGLGKIVVWK 101 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~ 101 (106)
.|.|..|.||++||=
T Consensus 50 v~tG~SGSGKSSLaf 64 (993)
T 2ygr_A 50 VFTGLSGSGKSSLAF 64 (993)
T ss_dssp EEEESTTSSHHHHHT
T ss_pred EEECCCCCcHHHHHH
Confidence 777999999999984
No 482
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=52.23 E-value=6 Score=35.39 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=13.6
Q ss_pred ceEecCCCcHHHHHH
Q 046733 87 VIVGIGGLGKIVVWK 101 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~ 101 (106)
.|.|..|.||++||=
T Consensus 48 v~tG~SGSGKSSLaf 62 (972)
T 2r6f_A 48 VLTGLSGSGKSSLAF 62 (972)
T ss_dssp EEEESTTSSHHHHHT
T ss_pred EEECCCCCCHHHHHH
Confidence 777999999999984
No 483
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=52.01 E-value=5.1 Score=31.69 Aligned_cols=18 Identities=22% Similarity=0.411 Sum_probs=15.9
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+.|||.+.+|||||-..+
T Consensus 75 V~ivG~PNvGKSTL~n~L 92 (376)
T 4a9a_A 75 VGFVGFPSVGKSTLLSKL 92 (376)
T ss_dssp EEEECCCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 389999999999998765
No 484
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=51.02 E-value=7.7 Score=26.06 Aligned_cols=18 Identities=28% Similarity=0.169 Sum_probs=14.9
Q ss_pred CcceEecCCCcHHHHHHh
Q 046733 85 DTVIVGIGGLGKIVVWKN 102 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~ 102 (106)
++-|++.-|.|||.++..
T Consensus 50 ~~li~~~tGsGKT~~~~~ 67 (216)
T 3b6e_A 50 NIIICLPTGSGKTRVAVY 67 (216)
T ss_dssp CEEEECSCHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHH
Confidence 347889999999998765
No 485
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=50.60 E-value=5.6 Score=35.15 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=13.6
Q ss_pred ceEecCCCcHHHHHH
Q 046733 87 VIVGIGGLGKIVVWK 101 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~ 101 (106)
.|.|..|.||++||=
T Consensus 28 v~tG~SGSGKSsLaf 42 (916)
T 3pih_A 28 VITGVSGSGKSSLAM 42 (916)
T ss_dssp EEEESTTSSSHHHHT
T ss_pred EEECCCCCcHHHHHH
Confidence 788999999999983
No 486
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=49.23 E-value=15 Score=30.48 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=18.5
Q ss_pred HHHHHhcC-CCCCcceEecCCCcHHHHH
Q 046733 74 IINRLSAL-NDVDTVIVGIGGLGKIVVW 100 (106)
Q Consensus 74 lv~~L~~~-~~~~~~IvGmGGiGKTTLA 100 (106)
.++.|.-- ...+..|+|-.|+|||+||
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~La 179 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIA 179 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHH
T ss_pred eeccccccccCCEEEEecCCCCCchHHH
Confidence 35555322 2224499999999999995
No 487
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=49.19 E-value=6.7 Score=33.28 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=16.6
Q ss_pred CcceEecCCCcHHHHHHhh
Q 046733 85 DTVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~~V 103 (106)
+..|+|-.|+|||+|++.+
T Consensus 223 r~~Ifg~~g~GKT~l~~~i 241 (578)
T 3gqb_A 223 TAAIPGPFGSGKSVTQQSL 241 (578)
T ss_dssp EEEECCCTTSCHHHHHHHH
T ss_pred EEeeeCCCCccHHHHHHHH
Confidence 3499999999999999865
No 488
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=48.15 E-value=2.8 Score=34.09 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=16.1
Q ss_pred cceEecCCCcHHHHHHhh
Q 046733 86 TVIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~V 103 (106)
+.|+|..++|||||...+
T Consensus 246 V~ivG~pnvGKSSLln~L 263 (482)
T 1xzp_A 246 MVIVGKPNVGKSTLLNRL 263 (482)
T ss_dssp EEEECCHHHHTCHHHHHH
T ss_pred EEEECcCCCcHHHHHHHH
Confidence 489999999999999765
No 489
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=48.09 E-value=9.8 Score=28.28 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=14.6
Q ss_pred ceEecCCCcHHH-HHHhhh
Q 046733 87 VIVGIGGLGKIV-VWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTT-LA~~Vy 104 (106)
-|.|.-|.|||| |.+.++
T Consensus 32 vitG~M~sGKTT~Llr~~~ 50 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLR 50 (219)
T ss_dssp EEEECTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 888999999999 555554
No 490
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=46.77 E-value=15 Score=30.68 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=14.4
Q ss_pred CcceEecCCCcHHHHH
Q 046733 85 DTVIVGIGGLGKIVVW 100 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA 100 (106)
+..|.|-.|+|||+||
T Consensus 164 R~~Ifg~~g~GKT~l~ 179 (513)
T 3oaa_A 164 RELIIGDRQTGKTALA 179 (513)
T ss_dssp BCEEEESSSSSHHHHH
T ss_pred EEEeecCCCCCcchHH
Confidence 4499999999999997
No 491
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=46.54 E-value=8.7 Score=29.47 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=11.9
Q ss_pred cCCCcHHHHHHhhh
Q 046733 91 IGGLGKIVVWKNIY 104 (106)
Q Consensus 91 mGGiGKTTLA~~Vy 104 (106)
+||.|||-++..+.
T Consensus 46 vGGTGKTP~vi~L~ 59 (315)
T 4ehx_A 46 VGGSGKTSFVMYLA 59 (315)
T ss_dssp SSCCSHHHHHHHHH
T ss_pred eCCCChHHHHHHHH
Confidence 79999999987654
No 492
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=45.52 E-value=15 Score=30.60 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.8
Q ss_pred CcceEecCCCcHHHHHH
Q 046733 85 DTVIVGIGGLGKIVVWK 101 (106)
Q Consensus 85 ~~~IvGmGGiGKTTLA~ 101 (106)
+..|+|-.|+|||+||.
T Consensus 177 R~~I~g~~g~GKT~Lal 193 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAI 193 (515)
T ss_dssp BEEEEEETTSSHHHHHH
T ss_pred EEEEEcCCCCCccHHHH
Confidence 45999999999999963
No 493
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=43.69 E-value=11 Score=27.32 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=13.1
Q ss_pred cceEecCCCcHHHHHHh
Q 046733 86 TVIVGIGGLGKIVVWKN 102 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~~ 102 (106)
+-|.+-.|-||||+|-.
T Consensus 31 i~v~tG~GkGKTTaA~G 47 (196)
T 1g5t_A 31 IIVFTGNGKGKTTAAFG 47 (196)
T ss_dssp EEEEESSSSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 36667777999999863
No 494
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=43.32 E-value=26 Score=25.47 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=18.3
Q ss_pred HHHHHHhcCCCCCcceEecCCCcHHHHHH
Q 046733 73 KIINRLSALNDVDTVIVGIGGLGKIVVWK 101 (106)
Q Consensus 73 ~lv~~L~~~~~~~~~IvGmGGiGKTTLA~ 101 (106)
+.+..+......++-|++.-|.|||..+.
T Consensus 34 ~~i~~~~~~~~~~~lv~a~TGsGKT~~~~ 62 (395)
T 3pey_A 34 RALPLLLHNPPRNMIAQSQSGTGKTAAFS 62 (395)
T ss_dssp HHHHHHHCSSCCCEEEECCTTSCHHHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCcHHHHHH
Confidence 34444444322344778999999998654
No 495
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=42.73 E-value=11 Score=27.78 Aligned_cols=16 Identities=31% Similarity=0.067 Sum_probs=13.9
Q ss_pred ceEecCCCcHHHHHHh
Q 046733 87 VIVGIGGLGKIVVWKN 102 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~ 102 (106)
-|.|.-|.||||.+-.
T Consensus 32 vitG~MgsGKTT~lL~ 47 (214)
T 2j9r_A 32 VICGSMFSGKSEELIR 47 (214)
T ss_dssp EEECSTTSCHHHHHHH
T ss_pred EEECCCCCcHHHHHHH
Confidence 7889999999998754
No 496
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=41.76 E-value=12 Score=31.44 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=15.0
Q ss_pred ceEecCCCcHHHHHHhh
Q 046733 87 VIVGIGGLGKIVVWKNI 103 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~V 103 (106)
-|.|..|.|||++.+.+
T Consensus 218 LIaG~TGSGKS~~L~tl 234 (574)
T 2iut_A 218 LVAGTTGSGKSVGVNAM 234 (574)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 78899999999998863
No 497
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=41.09 E-value=22 Score=23.71 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=12.7
Q ss_pred cceEecCCCcHHHHHH
Q 046733 86 TVIVGIGGLGKIVVWK 101 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~ 101 (106)
+-|++.-|.|||..+-
T Consensus 41 ~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 41 LIGQARTGTGKTLAFA 56 (207)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCChHHHHHH
Confidence 4777999999998643
No 498
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=40.71 E-value=16 Score=30.29 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=14.2
Q ss_pred cceEecCCCcHHHHHH
Q 046733 86 TVIVGIGGLGKIVVWK 101 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~ 101 (106)
..|+|-.|+|||+||.
T Consensus 166 ~~Ifg~~g~GKT~Lal 181 (507)
T 1fx0_A 166 ELIIGDRQTGKTAVAT 181 (507)
T ss_dssp CBEEESSSSSHHHHHH
T ss_pred EEEecCCCCCccHHHH
Confidence 3999999999999963
No 499
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=40.39 E-value=9.7 Score=31.31 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=13.1
Q ss_pred cceEecCCCcHHHHHH
Q 046733 86 TVIVGIGGLGKIVVWK 101 (106)
Q Consensus 86 ~~IvGmGGiGKTTLA~ 101 (106)
+-|.|..|.|||+..-
T Consensus 18 ~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 18 CLVLAGAGSGKTRVIT 33 (673)
T ss_dssp EEECCCTTSCHHHHHH
T ss_pred EEEEeCCCCChHHHHH
Confidence 3788999999997653
No 500
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=39.80 E-value=32 Score=28.10 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=16.0
Q ss_pred ceEecCCCcHHHHHHhhh
Q 046733 87 VIVGIGGLGKIVVWKNIY 104 (106)
Q Consensus 87 ~IvGmGGiGKTTLA~~Vy 104 (106)
+|+|.-+.||++|...++
T Consensus 71 sv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 71 SVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEBTTSSHHHHHHHHH
T ss_pred EEECCCCCchhHHHHHHH
Confidence 999999999999998553
Done!