BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046734
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 229 LPVNFVEETSEKELVVTWCLQLEMLAHQAVGC 260
LP F+E+T +VV W Q E+LAH+AVG
Sbjct: 315 LPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGA 346
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 183 ACMIWLNANETRXXXXXXXXXXXXXNAELMSEMVQALRQ---------NGNNNFLLPVNF 233
C+ WL+ +E ++ + ++L + G+ LP F
Sbjct: 262 GCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGF 321
Query: 234 VEETSEKELVVTWCLQLEMLAHQAVGC 260
+E T K +V W Q+E+L H +VG
Sbjct: 322 LERTKTKGKIVAWAPQVEILKHSSVGV 348
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 53/283 (18%), Positives = 103/283 (36%), Gaps = 53/283 (18%)
Query: 16 ELIIKLEVSVN--PLSCPVYDASFTLVLDIAKQLDVGRVAVAVFFTQSCAAIAIYCAMHL 73
EL+ +L S N P++C V D + + A++ ++ V ++F+ S A ++ MH
Sbjct: 105 ELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNV---LYFSSS--ACSLLNVMHF 159
Query: 74 EML----------DVTTTAAATKKQIYRPPAFXXXXXXXXXXXXXXXHPVTGQFHPVIEQ 123
+ T + ++ P +P ++E
Sbjct: 160 RSFVERGIIPFKDESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPN----DIMLEF 215
Query: 124 LLEQFSNIKTADCVLFNLFDKLEEVFMWLKSRAIGPTVPSIHLEG-------DTDYAFSI 176
+E + +L N F++LE + A+ T+PSI+ G T +
Sbjct: 216 FIEVADRVNKDTTILLNTFNELESDVI----NALSSTIPSIYPIGPLPSLLKQTPQIHQL 271
Query: 177 FNLNND------ACMIWLNANETRXXXXXXXXXXXXXNAELMSEMVQALRQNGNNNFLLP 230
+L+++ C+ WL + E E + E L N +FL
Sbjct: 272 DSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGL-ANCKKSFLWI 330
Query: 231 VN--------------FVEETSEKELVVTWCLQLEMLAHQAVG 259
+ F E +++ L+ +WC Q ++L H ++G
Sbjct: 331 IRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQDKVLNHPSIG 373
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 216 VQALRQNGNNNFLLPVNFVE--ETSEKELVVTWCLQLEMLAHQAVG 259
V+ L N + P F+E E K ++ W Q+E+LAH+A+G
Sbjct: 307 VRFLWSNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIG 352
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 216 VQALRQNGNNNFLLPVNFVE--ETSEKELVVTWCLQLEMLAHQAVG 259
V+ L N + P F+E E K ++ W Q+E+LAH+A+G
Sbjct: 307 VRFLWSNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIG 352
>pdb|3GON|A Chain A, Streptococcus Pneumoniae Phosphomevalonate Kinase In
Complex With Phosphomevalonate And Amppnp
Length = 335
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 67/177 (37%), Gaps = 38/177 (21%)
Query: 131 IKTADCVLFNLFDKLEEVFMWLKSRAIGPTVPSIHLEGDTDYAFSIFN----LNNDACMI 186
I D VL+ FD+ ++V WL+ + + + D+ FSI L D +
Sbjct: 154 IAAEDLVLYQSFDR-QKVAAWLEEENLATVL-------ERDWGFSISQVKPTLECDFLVG 205
Query: 187 WLNANETRXXXXXXXXXXXXXNAELMSEMVQALRQNGNNNFLLPVNFVEETSEKELVVTW 246
W + S MVQ ++QN N NFL TS KE VV+
Sbjct: 206 W------------------TKEVAVSSHMVQQIKQNINQNFL--------TSSKETVVSL 239
Query: 247 CLQLEMLAHQAVGCSKHIASVDFFCRSKEVMLGERRQEITKSMHWKELAETAVDEGG 303
LE + + +AS S ++ RQ S + +A+++ GG
Sbjct: 240 VEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAGGG 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,789,308
Number of Sequences: 62578
Number of extensions: 260790
Number of successful extensions: 489
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 12
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)