BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046735
(117 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 60 RVPTIDPEGIHKD-PNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIK 109
+VPTID + I D R I ++K AS +WG +I+HGIP ++ +K
Sbjct: 46 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVK 96
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 60 RVPTIDPEGIHKD-PNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIK 109
+VPTID + I D R I ++K AS +WG +I+HGIP ++ +K
Sbjct: 45 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVK 95
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 60 RVPTIDPEGIHKD-PNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIK 109
+VPTID + I D R I ++K AS +WG +I+HGIP + +K
Sbjct: 46 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVK 96
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 76 RTEIINKVKNASEEWGFFQVISHGIPLSVLNDIK 109
R +K+A E WGFF++++HGIP V + ++
Sbjct: 17 RAATXEXIKDACENWGFFELVNHGIPREVXDTVE 50
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 54 GNSSQLRVPTIDPEGIHKDPNT-RTEIINKVKNASEEWGFFQVISHGI 100
G+ S+ VP ID + D + + ++ AS + GFF ++HGI
Sbjct: 2 GSVSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI 49
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 28.9 bits (63), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 54 GNSSQLRVPTIDPEGIHKDPNT-RTEIINKVKNASEEWGFFQVISHGI 100
G+ S+ VP ID + D + + ++ AS + GFF ++HGI
Sbjct: 2 GSVSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI 49
>pdb|1EB7|A Chain A, Crystal Structure Of The Di-Haem Cytochrome C Peroxidase
From Pseudomonas Aeruginosa
pdb|2VHD|A Chain A, Crystal Structure Of The Di-Haem Cytochrome C Peroxidase
From Pseudomonas Aeruginosa - Mixed Valence Form
pdb|2VHD|B Chain B, Crystal Structure Of The Di-Haem Cytochrome C Peroxidase
From Pseudomonas Aeruginosa - Mixed Valence Form
Length = 323
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 26 GVKGLVDARVAKVPRIFECEQSVVNLNSGNSSQLRVPTIDPEGIHKDPNTRTEIINKVKN 85
G K D R+++ + C + N+ +G + VPT G K P + N V N
Sbjct: 34 GKKLFFDPRLSRS-HVLSCN-TCHNVGTGGAD--NVPTSVGHGWQKGPRNSPTVFNAVFN 89
Query: 86 ASEEW 90
A++ W
Sbjct: 90 AAQFW 94
>pdb|2WGK|A Chain A, Type Ii Baeyer-Villiger Monooxygenase Oxygenating
Constituent Of 3,6-Diketocamphane 1,6 Monooxygenase From
Pseudomonas Putida
pdb|2WGK|B Chain B, Type Ii Baeyer-Villiger Monooxygenase Oxygenating
Constituent Of 3,6-Diketocamphane 1,6 Monooxygenase From
Pseudomonas Putida
Length = 378
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 73 PNTRTEIINKVKNASEEWGFFQVISH 98
P+T TE IN + A+ WG QV +H
Sbjct: 324 PDTVTEKINALFEATGGWGTLQVEAH 349
>pdb|1LOH|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex With
Hexasaccharide Hyaluronan Substrate
pdb|1LXK|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex With
Tetrasaccharide Hyaluronan Substrate
Length = 721
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 6 ETDSNYDRESELKAFDDTKAGVKGLVDARVAKVPR 40
++DS YD LK + D L DA VA VPR
Sbjct: 337 QSDSYYDVFKNLKTYKDISLMQSLLSDAGVASVPR 371
>pdb|1OJM|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex With Unsulphated Chondroitin
Disaccharide
Length = 729
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 6 ETDSNYDRESELKAFDDTKAGVKGLVDARVAKVPR 40
++DS YD LK + D L DA VA VPR
Sbjct: 337 QSDSYYDVFKNLKTYKDISLMQSLLSDAGVASVPR 371
>pdb|1EGU|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase At 1.56 A Resolution
pdb|1F9G|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase Cocrystallized With Ascorbic Acid
pdb|1C82|A Chain A, Mechanism Of Hyaluronan Binding And Degradation: Structure
Of Streptococcus Pneumoniae Hyaluronate Lyase In Complex
With Hyaluronic Acid Disaccharide At 1.7 A Resolution
pdb|1OJP|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex With 6-sulphated Chondroitin
Disaccharide
pdb|1W3Y|A Chain A, Crystal Structure Of S. Pneumoniae Hyaluronate Lyase In
Complex With Palmitoyl-Vitamin C
pdb|2BRP|A Chain A, Crystal Structure Of S.Pneumoniae Hyaluronate Lyase In
Complex With W249b
pdb|2BRV|X Chain X, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 70percent Saturated Malonate.
pdb|2BRW|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 30percent Pegmme.
pdb|2BRW|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 30percent Pegmme
Length = 731
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 6 ETDSNYDRESELKAFDDTKAGVKGLVDARVAKVPR 40
++DS YD LK + D L DA VA VPR
Sbjct: 339 QSDSYYDVFKNLKTYKDISLMQSLLSDAGVASVPR 373
>pdb|1N7N|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W292a Mutant
Length = 721
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 6 ETDSNYDRESELKAFDDTKAGVKGLVDARVAKVPR 40
++DS YD LK + D L DA VA VPR
Sbjct: 337 QSDSYYDVFKNLKTYKDISLMQSLLSDAGVASVPR 371
>pdb|1N7O|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase F343v Mutant
Length = 721
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 6 ETDSNYDRESELKAFDDTKAGVKGLVDARVAKVPR 40
++DS YD LK + D L DA VA VPR
Sbjct: 337 QSDSYYDVFKNLKTYKDISLMQSLLSDAGVASVPR 371
>pdb|1OJN|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex Of The Tyr408phe Mutant With
6-sulphated Chondroitin Disaccharide
Length = 731
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 6 ETDSNYDRESELKAFDDTKAGVKGLVDARVAKVPR 40
++DS YD LK + D L DA VA VPR
Sbjct: 339 QSDSYYDVFKNLKTYKDISLMQSLLSDAGVASVPR 373
>pdb|1OJO|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex Of The Tyr408phe Mutant With
4-sulphated Chondroitin Disaccharide
Length = 731
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 6 ETDSNYDRESELKAFDDTKAGVKGLVDARVAKVPR 40
++DS YD LK + D L DA VA VPR
Sbjct: 339 QSDSYYDVFKNLKTYKDISLMQSLLSDAGVASVPR 373
>pdb|1N7Q|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W291aW292A
DOUBLE MUTANT Complex With Hyaluronan Hexasacchride
Length = 721
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 6 ETDSNYDRESELKAFDDTKAGVKGLVDARVAKVPR 40
++DS YD LK + D L DA VA VPR
Sbjct: 337 QSDSYYDVFKNLKTYKDISLMQSLLSDAGVASVPR 371
>pdb|1N7P|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W292aF343V
Double Mutant
Length = 721
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 6 ETDSNYDRESELKAFDDTKAGVKGLVDARVAKVPR 40
++DS YD LK + D L DA VA VPR
Sbjct: 337 QSDSYYDVFKNLKTYKDISLMQSLLSDAGVASVPR 371
>pdb|1N7R|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase
W291a/w292a/f343v Mutant Complex With Hexasaccharide
Hyaluronan
Length = 721
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 6 ETDSNYDRESELKAFDDTKAGVKGLVDARVAKVPR 40
++DS YD LK + D L DA VA VPR
Sbjct: 337 QSDSYYDVFKNLKTYKDISLMQSLLSDAGVASVPR 371
>pdb|3OC3|A Chain A, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
pdb|3OC3|B Chain B, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
Length = 800
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 60 RVPTIDPEGIHKDPNTRTEIINKVKNASEE 89
R+ I P P RT I+N VKN SEE
Sbjct: 376 RLKDIFPCFTSPVPEVRTSILNMVKNLSEE 405
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 45 EQSVVNLNSGNSS-QLRVPTIDPEGIHKDPNTRTEIINKVKNASEE 89
E S+ +L S + +LR+P++ P+ D NTR ++ +A E
Sbjct: 994 EPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTE 1039
>pdb|3BDL|A Chain A, Crystal Structure Of A Truncated Human Tudor-Sn
Length = 570
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 35 VAKVPRIFECEQSVVNLNSGNSSQLRVPTIDP 66
VAKV ++ + VV LNSG+ + + +I P
Sbjct: 26 VAKVMQVLNADAIVVKLNSGDYKTIHLSSIRP 57
>pdb|3K2E|A Chain A, Crystal Structure Of Enoyl-(Acyl-Carrier-Protein)
Reductase From Anaplasma Phagocytophilum At 1.9a
Resolution
pdb|3K2E|B Chain B, Crystal Structure Of Enoyl-(Acyl-Carrier-Protein)
Reductase From Anaplasma Phagocytophilum At 1.9a
Resolution
pdb|3K31|A Chain A, Crystal Structure Of Eonyl-(Acyl-Carrier-Protein)
Reductase From Anaplasma Phagocytophilum In Complex With
Nad At 1.9a Resolution
pdb|3K31|B Chain B, Crystal Structure Of Eonyl-(Acyl-Carrier-Protein)
Reductase From Anaplasma Phagocytophilum In Complex With
Nad At 1.9a Resolution
Length = 296
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 81 NKVKNASEEWGFFQVISHGIPLSVLNDIK 109
N K +EEWG + H + S N++K
Sbjct: 97 NMFKVLAEEWGSLDFVVHAVAFSDKNELK 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,311,393
Number of Sequences: 62578
Number of extensions: 117597
Number of successful extensions: 239
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 26
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)