Query 046735
Match_columns 117
No_of_seqs 235 out of 1678
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 03:59:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02904 oxidoreductase 99.9 5.3E-22 1.1E-26 158.1 8.2 96 19-117 8-107 (357)
2 PLN02947 oxidoreductase 99.8 3.3E-21 7.2E-26 154.4 7.4 89 24-116 25-120 (374)
3 PLN02758 oxidoreductase, 2OG-F 99.8 2.4E-20 5.2E-25 148.7 8.0 90 25-116 15-109 (361)
4 PLN03176 flavanone-3-hydroxyla 99.8 6.7E-20 1.5E-24 126.4 7.7 86 27-116 6-93 (120)
5 PLN02393 leucoanthocyanidin di 99.8 4.3E-20 9.4E-25 147.2 7.7 91 24-116 12-108 (362)
6 PLN03178 leucoanthocyanidin di 99.8 8E-20 1.7E-24 145.6 7.5 89 26-116 7-104 (360)
7 PLN02216 protein SRG1 99.8 1.1E-19 2.4E-24 144.7 8.1 89 25-116 15-107 (357)
8 PLN02912 oxidoreductase, 2OG-F 99.8 1.4E-18 3E-23 138.1 7.8 87 26-117 7-96 (348)
9 PLN02276 gibberellin 20-oxidas 99.7 2.5E-18 5.4E-23 137.1 6.7 79 36-116 18-97 (361)
10 PLN02515 naringenin,2-oxogluta 99.7 3.3E-18 7.1E-23 136.4 7.1 82 34-117 11-94 (358)
11 PLN00417 oxidoreductase, 2OG-F 99.7 6.1E-18 1.3E-22 134.4 8.5 87 27-116 9-100 (348)
12 PLN02639 oxidoreductase, 2OG-F 99.7 4.6E-18 1E-22 134.4 7.7 82 28-116 3-88 (337)
13 PLN02704 flavonol synthase 99.7 5.4E-18 1.2E-22 133.9 8.0 84 26-116 5-93 (335)
14 PLN02750 oxidoreductase, 2OG-F 99.7 5.4E-17 1.2E-21 128.7 7.2 77 36-116 2-80 (345)
15 PLN02254 gibberellin 3-beta-di 99.7 4.6E-17 1E-21 129.9 5.9 73 34-116 26-104 (358)
16 PF14226 DIOX_N: non-haem diox 99.7 6.8E-17 1.5E-21 108.8 3.6 53 61-116 1-53 (116)
17 KOG0143 Iron/ascorbate family 99.6 5.1E-16 1.1E-20 122.5 6.4 60 57-116 14-73 (322)
18 PLN02403 aminocyclopropanecarb 99.6 4.8E-15 1E-19 116.0 6.1 56 60-117 2-57 (303)
19 PLN02299 1-aminocyclopropane-1 99.5 8.9E-15 1.9E-19 115.2 6.3 57 58-116 4-60 (321)
20 PTZ00273 oxidase reductase; Pr 99.5 7.8E-15 1.7E-19 115.0 5.4 58 59-116 4-62 (320)
21 PLN02485 oxidoreductase 99.5 1.8E-14 3.9E-19 113.5 5.5 58 59-116 6-71 (329)
22 PLN02997 flavonol synthase 99.5 4.8E-14 1E-18 111.3 6.4 54 58-116 30-83 (325)
23 PLN02156 gibberellin 2-beta-di 99.5 7.9E-14 1.7E-18 110.5 6.1 51 59-117 25-75 (335)
24 COG3491 PcbC Isopenicillin N s 99.4 2.5E-13 5.4E-18 106.3 6.1 58 59-116 4-62 (322)
25 PLN02365 2-oxoglutarate-depend 99.4 1.7E-13 3.7E-18 106.9 4.8 52 59-117 4-55 (300)
26 PLN03002 oxidoreductase, 2OG-F 99.4 3E-13 6.5E-18 106.9 5.8 54 58-116 12-65 (332)
27 PLN02984 oxidoreductase, 2OG-F 99.4 4E-13 8.6E-18 106.7 6.1 50 58-116 36-85 (341)
28 PRK08130 putative aldolase; Va 74.8 5.1 0.00011 29.6 3.9 36 60-100 127-162 (213)
29 PRK08333 L-fuculose phosphate 74.6 4.6 0.0001 29.1 3.6 36 60-100 120-155 (184)
30 cd00379 Ribosomal_L10_P0 Ribos 68.7 19 0.00042 24.7 5.6 39 75-113 2-41 (155)
31 cd05796 Ribosomal_P0_like Ribo 66.9 21 0.00045 25.5 5.5 39 75-113 2-41 (163)
32 PF07350 DUF1479: Protein of u 66.7 3 6.4E-05 34.6 1.2 48 58-111 47-94 (416)
33 PRK05874 L-fuculose-phosphate 64.3 9.8 0.00021 28.4 3.5 35 61-100 128-162 (217)
34 PRK06833 L-fuculose phosphate 64.0 12 0.00027 27.6 4.0 25 76-100 135-159 (214)
35 cd05795 Ribosomal_P0_L10e Ribo 61.3 30 0.00064 24.9 5.5 38 76-113 3-41 (175)
36 PRK04019 rplP0 acidic ribosoma 60.2 24 0.00052 28.1 5.2 40 74-113 6-46 (330)
37 PRK08087 L-fuculose phosphate 58.3 15 0.00032 27.2 3.5 35 61-100 123-157 (215)
38 COG1402 Uncharacterized protei 58.3 25 0.00054 27.1 4.9 39 74-112 86-127 (250)
39 PRK00311 panB 3-methyl-2-oxobu 56.0 36 0.00079 26.4 5.4 35 82-116 165-199 (264)
40 TIGR01086 fucA L-fuculose phos 55.9 19 0.00041 26.6 3.7 24 77-100 133-156 (214)
41 TIGR00222 panB 3-methyl-2-oxob 55.4 38 0.00082 26.4 5.4 35 82-116 164-198 (263)
42 PF07283 TrbH: Conjugal transf 54.6 13 0.00029 25.6 2.5 25 77-101 35-59 (121)
43 PLN02424 ketopantoate hydroxym 53.5 41 0.00088 27.2 5.5 35 82-116 186-220 (332)
44 cd05797 Ribosomal_L10 Ribosoma 53.5 50 0.0011 23.0 5.4 39 75-113 4-43 (157)
45 PF00596 Aldolase_II: Class II 53.4 7.5 0.00016 27.7 1.2 37 59-100 122-159 (184)
46 TIGR02409 carnitine_bodg gamma 53.0 21 0.00047 28.4 3.9 47 59-109 108-154 (366)
47 PRK06557 L-ribulose-5-phosphat 52.9 19 0.00042 26.6 3.4 36 60-100 130-167 (221)
48 PRK03634 rhamnulose-1-phosphat 52.7 18 0.00039 28.0 3.3 35 61-100 180-214 (274)
49 PF11243 DUF3045: Protein of u 52.6 22 0.00048 23.0 3.1 21 81-101 36-56 (89)
50 PF00466 Ribosomal_L10: Riboso 52.5 59 0.0013 20.7 5.4 39 74-112 4-43 (100)
51 PRK05834 hypothetical protein; 52.2 22 0.00048 26.1 3.6 23 78-100 136-160 (194)
52 COG0244 RplJ Ribosomal protein 52.2 48 0.001 24.0 5.3 40 74-113 6-46 (175)
53 PRK06755 hypothetical protein; 51.2 15 0.00032 27.4 2.6 36 60-100 136-171 (209)
54 TIGR02624 rhamnu_1P_ald rhamnu 51.0 21 0.00045 27.7 3.4 36 60-100 177-212 (270)
55 PRK06357 hypothetical protein; 50.3 28 0.00061 25.9 3.9 24 77-100 142-171 (216)
56 PRK13835 conjugal transfer pro 49.9 21 0.00044 25.5 2.9 21 77-97 68-88 (145)
57 COG3265 GntK Gluconate kinase 48.0 32 0.00069 25.0 3.7 50 61-116 69-132 (161)
58 PRK00099 rplJ 50S ribosomal pr 47.4 67 0.0015 22.8 5.4 39 75-113 5-44 (172)
59 PRK13883 conjugal transfer pro 46.8 23 0.00049 25.4 2.8 23 77-99 63-85 (151)
60 PRK08660 L-fuculose phosphate 45.9 28 0.00061 24.9 3.3 24 77-100 126-149 (181)
61 cd06557 KPHMT-like Ketopantoat 44.4 76 0.0016 24.5 5.6 36 81-116 161-196 (254)
62 cd00398 Aldolase_II Class II A 44.2 21 0.00046 26.1 2.4 38 60-100 122-159 (209)
63 PRK09553 tauD taurine dioxygen 43.0 75 0.0016 24.3 5.4 49 57-110 12-60 (277)
64 PF03460 NIR_SIR_ferr: Nitrite 42.2 27 0.00059 20.7 2.3 36 78-113 24-67 (69)
65 PF03668 ATP_bind_2: P-loop AT 41.7 37 0.0008 26.8 3.5 28 84-113 18-45 (284)
66 PRK09220 methylthioribulose-1- 41.4 33 0.0007 25.2 3.1 25 76-100 144-171 (204)
67 PF12368 DUF3650: Protein of u 41.0 15 0.00032 19.1 0.8 17 93-109 9-25 (28)
68 PRK06754 mtnB methylthioribulo 40.9 28 0.00062 25.6 2.7 24 77-100 148-172 (208)
69 TIGR02130 dapB_plant dihydrodi 39.2 71 0.0015 25.1 4.7 45 63-115 73-118 (275)
70 PF02668 TauD: Taurine catabol 38.9 74 0.0016 23.1 4.7 33 78-110 24-56 (258)
71 COG0289 DapB Dihydrodipicolina 38.1 61 0.0013 25.4 4.2 36 78-113 80-116 (266)
72 PF08823 PG_binding_2: Putativ 37.2 63 0.0014 20.2 3.5 33 77-109 15-47 (74)
73 TIGR03328 salvage_mtnB methylt 36.8 44 0.00095 24.2 3.1 35 60-100 126-163 (193)
74 PRK06661 hypothetical protein; 36.8 35 0.00077 25.6 2.7 24 77-100 137-160 (231)
75 cd00491 4Oxalocrotonate_Tautom 36.6 22 0.00048 20.1 1.2 29 62-90 1-30 (58)
76 PTZ00135 60S acidic ribosomal 34.8 1.2E+02 0.0025 24.2 5.4 40 74-113 8-48 (310)
77 PRK06208 hypothetical protein; 33.9 44 0.00094 26.0 2.8 24 77-100 177-200 (274)
78 PF01113 DapB_N: Dihydrodipico 33.5 82 0.0018 21.0 3.9 36 78-113 78-114 (124)
79 PRK02289 4-oxalocrotonate taut 33.3 28 0.00061 20.3 1.3 28 62-89 2-30 (60)
80 PF02548 Pantoate_transf: Keto 33.0 73 0.0016 24.8 3.9 34 82-115 166-199 (261)
81 PF04914 DltD_C: DltD C-termin 33.0 37 0.0008 23.6 2.1 25 72-97 70-94 (130)
82 PF09440 eIF3_N: eIF3 subunit 32.9 36 0.00079 23.7 2.0 19 96-114 114-132 (133)
83 PRK06486 hypothetical protein; 32.8 46 0.00099 25.6 2.7 24 77-100 162-185 (262)
84 PRK02220 4-oxalocrotonate taut 32.7 28 0.0006 20.1 1.2 28 62-89 2-30 (61)
85 COG4185 Uncharacterized protei 32.4 81 0.0018 23.4 3.8 30 80-109 83-134 (187)
86 PRK08193 araD L-ribulose-5-pho 31.3 91 0.002 23.3 4.1 24 77-100 142-172 (231)
87 PF00586 AIRS: AIR synthase re 30.4 57 0.0012 20.5 2.5 24 75-98 72-95 (96)
88 cd04367 IlGF_insulin_like IlGF 29.7 39 0.00084 21.6 1.6 24 77-100 8-31 (79)
89 PRK07490 hypothetical protein; 29.7 56 0.0012 24.8 2.7 25 76-100 145-169 (245)
90 COG5488 Integral membrane prot 28.5 52 0.0011 23.8 2.2 26 63-89 136-161 (164)
91 PTZ00240 60S ribosomal protein 27.9 1.6E+02 0.0034 23.7 5.1 39 75-113 7-46 (323)
92 TIGR00013 taut 4-oxalocrotonat 27.9 38 0.00081 19.6 1.2 29 62-90 1-31 (63)
93 COG4567 Response regulator con 26.5 64 0.0014 23.7 2.4 29 76-104 18-46 (182)
94 PLN02775 Probable dihydrodipic 26.4 1.3E+02 0.0028 23.7 4.3 44 63-114 84-128 (286)
95 PF01361 Tautomerase: Tautomer 25.7 27 0.00058 20.2 0.3 28 62-89 1-29 (60)
96 PF13992 YecR: YecR-like lipop 25.2 80 0.0017 19.9 2.4 23 79-101 29-51 (74)
97 COG2861 Uncharacterized protei 25.1 2.5E+02 0.0053 21.9 5.5 53 58-111 171-226 (250)
98 PRK00745 4-oxalocrotonate taut 24.8 48 0.001 19.1 1.3 30 62-91 2-33 (62)
99 TIGR02408 ectoine_ThpD ectoine 24.5 1.3E+02 0.0029 22.9 4.1 32 81-113 19-50 (277)
100 TIGR02410 carnitine_TMLD trime 24.0 1.9E+02 0.0042 23.0 5.0 47 61-110 101-147 (362)
101 TIGR03677 rpl7ae 50S ribosomal 23.6 1.3E+02 0.0029 20.2 3.5 34 81-114 79-115 (117)
102 cd00580 CHMI 5-carboxymethyl-2 23.5 82 0.0018 20.7 2.4 31 63-93 4-34 (113)
103 COG3384 Aromatic ring-opening 23.3 1E+02 0.0022 24.2 3.1 46 57-104 129-176 (268)
104 COG2450 Uncharacterized conser 22.8 95 0.0021 21.6 2.6 34 60-93 65-98 (124)
105 COG3113 Predicted NTP binding 22.6 1.3E+02 0.0028 20.1 3.2 44 60-105 40-84 (99)
106 PLN02433 uroporphyrinogen deca 22.4 1.8E+02 0.0039 22.9 4.5 43 71-113 289-335 (345)
107 PF11074 DUF2779: Domain of un 22.1 1.5E+02 0.0032 20.5 3.5 37 74-110 55-92 (130)
108 cd07041 STAS_RsbR_RsbS_like Su 21.9 2.2E+02 0.0047 17.9 4.5 30 78-108 60-89 (109)
109 PF11848 DUF3368: Domain of un 21.5 1.7E+02 0.0036 16.4 3.5 28 79-112 20-47 (48)
110 PF13309 HTH_22: HTH domain 20.8 63 0.0014 19.4 1.3 18 80-97 26-43 (64)
111 cd04368 IlGF IlGF, insulin_lik 20.5 77 0.0017 19.7 1.6 20 77-96 8-27 (67)
112 PRK01964 4-oxalocrotonate taut 20.3 62 0.0013 18.9 1.2 28 62-89 2-30 (64)
113 smart00830 CM_2 Chorismate mut 20.3 2.1E+02 0.0045 17.1 3.6 28 76-111 42-69 (79)
114 PRK07044 aldolase II superfami 20.2 1.1E+02 0.0023 23.2 2.7 23 78-100 152-174 (252)
No 1
>PLN02904 oxidoreductase
Probab=99.86 E-value=5.3e-22 Score=158.08 Aligned_cols=96 Identities=32% Similarity=0.476 Sum_probs=81.7
Q ss_pred hcccccccHHHHHhcccCCCCCceecCCCcccCCCC----CCCCCCcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEE
Q 046735 19 AFDDTKAGVKGLVDARVAKVPRIFECEQSVVNLNSG----NSSQLRVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQ 94 (117)
Q Consensus 19 ~~~~~~~~v~~l~~~~~~~vP~~yv~p~~~~~~~~~----~~~~~~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~ 94 (117)
-++++++||++|+++|+.+||++|++|++ ++|.. ......||+|||+.+. ++..|.+++++|++||++|||||
T Consensus 8 ~~~~~~~~~~~l~~~~~~~vp~~~~~~~~--~~p~~~~~~~~~~~~iPvIDls~~~-~~~~r~~~~~~l~~Ac~~~GFf~ 84 (357)
T PLN02904 8 VLDDSFTSAMTLTNSGVPHVPDRYVLPPS--QRPMLGSSIGTSTITLPVIDLSLLH-DPLLRSCVIHEIEMACKGFGFFQ 84 (357)
T ss_pred hhhccccchHHHHhcCCCCCCHHhCCCch--hcccccccccccCCCCCEEECcccC-CchhHHHHHHHHHHHHHHCceEE
Confidence 36788999999999999999999999988 66632 1123579999999886 34567889999999999999999
Q ss_pred EEcCCCCHHHHHHHHHhhhccCC
Q 046735 95 VISHGIPLSVLNDIKDGIRIPRA 117 (117)
Q Consensus 95 v~nHGI~~~li~~~~~~~~~~~~ 117 (117)
|+||||+.+++++++++++.-|+
T Consensus 85 v~nHGI~~~li~~~~~~~~~FF~ 107 (357)
T PLN02904 85 VINHGIPSSVVKDALDAATRFFD 107 (357)
T ss_pred EEeCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999987553
No 2
>PLN02947 oxidoreductase
Probab=99.84 E-value=3.3e-21 Score=154.40 Aligned_cols=89 Identities=31% Similarity=0.530 Sum_probs=75.8
Q ss_pred cccHHHHHhcccCCCCCceecCCCcccCCCCC-------CCCCCcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEE
Q 046735 24 KAGVKGLVDARVAKVPRIFECEQSVVNLNSGN-------SSQLRVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVI 96 (117)
Q Consensus 24 ~~~v~~l~~~~~~~vP~~yv~p~~~~~~~~~~-------~~~~~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~ 96 (117)
..+||.|+++++.+||++|++|++ ++|... .....||+|||+.+.+ ..+..++++|++||++||||||+
T Consensus 25 ~~~v~~l~~~~~~~vp~~yv~p~~--~~~~~~~~~~~~~~~~~~iPvIDls~l~~--~~~~~~~~~l~~Ac~~~GFF~v~ 100 (374)
T PLN02947 25 QKGVKHLCDSGITKVPAKYILPAS--DRPGLTRDEAIAASGNLKLPVIDLAELRG--SNRPHVLATLAAACREYGFFQVV 100 (374)
T ss_pred ecCHHHHHhcCCCcCCHHhcCCch--hccccccccccccCCCCCCCeEECcccCC--ccHHHHHHHHHHHHHHCcEEEEE
Confidence 468999999999999999999988 665311 1345799999998863 35778999999999999999999
Q ss_pred cCCCCHHHHHHHHHhhhccC
Q 046735 97 SHGIPLSVLNDIKDGIRIPR 116 (117)
Q Consensus 97 nHGI~~~li~~~~~~~~~~~ 116 (117)
||||+.++++++++.++.-|
T Consensus 101 nHGIp~~li~~~~~~~~~FF 120 (374)
T PLN02947 101 NHGVPSEVIGGMIDVARRFF 120 (374)
T ss_pred cCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988655
No 3
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.82 E-value=2.4e-20 Score=148.75 Aligned_cols=90 Identities=32% Similarity=0.427 Sum_probs=75.3
Q ss_pred ccHHHHHhcccCCCCCceecCCCcccCCCC----CCCCCCcCccCCCCCCC-CCchHHHHHHHHHHHHHhcceEEEEcCC
Q 046735 25 AGVKGLVDARVAKVPRIFECEQSVVNLNSG----NSSQLRVPTIDPEGIHK-DPNTRTEIINKVKNASEEWGFFQVISHG 99 (117)
Q Consensus 25 ~~v~~l~~~~~~~vP~~yv~p~~~~~~~~~----~~~~~~iPvIDls~~~~-~~~~r~~~~~~l~~A~~~~GFf~v~nHG 99 (117)
.+|+.|++++.++||++|++|++ ++|.. ......||+|||+.+.+ +...+.+++++|++||++||||||+|||
T Consensus 15 ~~~~~l~~~~~~~vp~~~v~~~~--~~p~~~~~~~~~~~~IPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHG 92 (361)
T PLN02758 15 DDVQELRKSKPTTVPERFIRDMD--ERPDLASDTLHAPDDIPVIDFSRLVKGDNDELFSEILKLRLACEEWGFFQVINHG 92 (361)
T ss_pred ccHHHHHhcCCCCCCHHHcCCch--hccccccccccCCCCCCeEEchhhcCCChHHHHHHHHHHHHHHHhCeEEEEecCC
Confidence 36899999999999999999998 66521 12345799999998863 4445677899999999999999999999
Q ss_pred CCHHHHHHHHHhhhccC
Q 046735 100 IPLSVLNDIKDGIRIPR 116 (117)
Q Consensus 100 I~~~li~~~~~~~~~~~ 116 (117)
|+.+++++++++++.-|
T Consensus 93 i~~~l~~~~~~~~~~FF 109 (361)
T PLN02758 93 IELELLEEIEKVAREFF 109 (361)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988755
No 4
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.81 E-value=6.7e-20 Score=126.39 Aligned_cols=86 Identities=24% Similarity=0.437 Sum_probs=68.6
Q ss_pred HHHHHhcccCCCCCceecCCCcccCCCC--CCCCCCcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCCCHHH
Q 046735 27 VKGLVDARVAKVPRIFECEQSVVNLNSG--NSSQLRVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGIPLSV 104 (117)
Q Consensus 27 v~~l~~~~~~~vP~~yv~p~~~~~~~~~--~~~~~~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~l 104 (117)
++.|... ..+|..|+|+.. .+|.. ......||+|||+.+.++...+.+++++|++||++||||||+||||+.++
T Consensus 6 ~~~l~~~--~~~p~~~~~~~~--~~p~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~~L~~A~~~~GFf~l~nhGi~~el 81 (120)
T PLN03176 6 LTALAEE--KTLQASFVRDED--ERPKVAYNQFSNEIPVISIAGIDDGGEKRAEICNKIVEACEEWGVFQIVDHGVDAKL 81 (120)
T ss_pred HHHHhcc--CCCCHhhcCChh--hCcCccccccCCCCCeEECccccCCchHHHHHHHHHHHHHHHCCEEEEECCCCCHHH
Confidence 4455432 789999999988 66621 11234799999998864334577899999999999999999999999999
Q ss_pred HHHHHHhhhccC
Q 046735 105 LNDIKDGIRIPR 116 (117)
Q Consensus 105 i~~~~~~~~~~~ 116 (117)
++++++.++.-|
T Consensus 82 id~~~~~~~~FF 93 (120)
T PLN03176 82 VSEMTTLAKEFF 93 (120)
T ss_pred HHHHHHHHHHHH
Confidence 999999988655
No 5
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=99.81 E-value=4.3e-20 Score=147.24 Aligned_cols=91 Identities=22% Similarity=0.475 Sum_probs=77.3
Q ss_pred cccHHHHHhcccCCCCCceecCCCcccCCCC-----CCCCCCcCccCCCCCCC-CCchHHHHHHHHHHHHHhcceEEEEc
Q 046735 24 KAGVKGLVDARVAKVPRIFECEQSVVNLNSG-----NSSQLRVPTIDPEGIHK-DPNTRTEIINKVKNASEEWGFFQVIS 97 (117)
Q Consensus 24 ~~~v~~l~~~~~~~vP~~yv~p~~~~~~~~~-----~~~~~~iPvIDls~~~~-~~~~r~~~~~~l~~A~~~~GFf~v~n 97 (117)
...|+.|+..+..+||++|++|++ +++.. ......||+|||+.+.+ ++..|.+++++|.+||++||||||+|
T Consensus 12 ~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~r~~~~~~l~~Ac~~~GFF~l~n 89 (362)
T PLN02393 12 IVRVQSLSESGLPTIPDRYVKPPS--QRPNSSNTTSAPAEINIPVIDLSSLFSDDARLRDATLRAISEACREWGFFQVVN 89 (362)
T ss_pred cchHHHHHhcCCCcCCHHHcCCch--hccccccccccCcCCCCCeEECccccCCChHHHHHHHHHHHHHHHHCcEEEEEe
Confidence 357999998889999999999998 66531 12446799999999863 45568899999999999999999999
Q ss_pred CCCCHHHHHHHHHhhhccC
Q 046735 98 HGIPLSVLNDIKDGIRIPR 116 (117)
Q Consensus 98 HGI~~~li~~~~~~~~~~~ 116 (117)
|||+.++++++++.++.-|
T Consensus 90 HGI~~~li~~~~~~~~~FF 108 (362)
T PLN02393 90 HGVRPELMDRAREAWREFF 108 (362)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988765
No 6
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=99.80 E-value=8e-20 Score=145.57 Aligned_cols=89 Identities=24% Similarity=0.447 Sum_probs=75.6
Q ss_pred cHHHHHhcccCCCCCceecCCCcccCCCC--------CCCCCCcCccCCCCCCC-CCchHHHHHHHHHHHHHhcceEEEE
Q 046735 26 GVKGLVDARVAKVPRIFECEQSVVNLNSG--------NSSQLRVPTIDPEGIHK-DPNTRTEIINKVKNASEEWGFFQVI 96 (117)
Q Consensus 26 ~v~~l~~~~~~~vP~~yv~p~~~~~~~~~--------~~~~~~iPvIDls~~~~-~~~~r~~~~~~l~~A~~~~GFf~v~ 96 (117)
.|+.|+++++.+||++|++|++ .++.. ......||+|||+.+.+ ++..|..++++|++||++||||||+
T Consensus 7 ~~~~l~~~~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~ 84 (360)
T PLN03178 7 RVEALASSGVSSIPKEYIRPPE--ERPSIGDVFEEEKKAAGPQVPVVDLSNIESDDEVVREACVEAVRAAAAEWGVMHLV 84 (360)
T ss_pred hHHHHHhcCCCCCCHHHcCCch--hcccccccccccccccCCCCCEEEchhhcCCChhhHHHHHHHHHHHHHHCCEEEEE
Confidence 5899999999999999999988 55521 11345799999998863 4556889999999999999999999
Q ss_pred cCCCCHHHHHHHHHhhhccC
Q 046735 97 SHGIPLSVLNDIKDGIRIPR 116 (117)
Q Consensus 97 nHGI~~~li~~~~~~~~~~~ 116 (117)
||||+.++++++++.++.-|
T Consensus 85 nHGI~~~l~~~~~~~~~~FF 104 (360)
T PLN03178 85 GHGIPADLLDRVRKAGEAFF 104 (360)
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988755
No 7
>PLN02216 protein SRG1
Probab=99.80 E-value=1.1e-19 Score=144.73 Aligned_cols=89 Identities=25% Similarity=0.422 Sum_probs=72.6
Q ss_pred ccHHHHHhc-ccCCCCCceecCCCcccCCCCC---CCCCCcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCC
Q 046735 25 AGVKGLVDA-RVAKVPRIFECEQSVVNLNSGN---SSQLRVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGI 100 (117)
Q Consensus 25 ~~v~~l~~~-~~~~vP~~yv~p~~~~~~~~~~---~~~~~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI 100 (117)
..|+.|+.+ ++.+||++|++|++ ++|... .....||+|||+.+.+ +..+.+++++|++||++||||||+||||
T Consensus 15 ~~~~~~~~~~~~~~~p~~~v~p~~--~~~~~~~~~~~~~~iPvIDls~~~~-~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 91 (357)
T PLN02216 15 PSVQEMVKEKMITTVPPRYVRSDQ--DKTEIAVDSGLSSEIPIIDMKRLCS-STAMDSEVEKLDFACKEWGFFQLVNHGI 91 (357)
T ss_pred hhHHHHHhcCCCCCCCHhhCcCcc--cCCccccccCcCCCCCeEEChhccC-CccHHHHHHHHHHHHHHCcEEEEECCCC
Confidence 358899876 78999999999998 665311 1124799999998863 2235578999999999999999999999
Q ss_pred CHHHHHHHHHhhhccC
Q 046735 101 PLSVLNDIKDGIRIPR 116 (117)
Q Consensus 101 ~~~li~~~~~~~~~~~ 116 (117)
+.++++++++.++.-|
T Consensus 92 ~~~li~~~~~~~~~FF 107 (357)
T PLN02216 92 DSSFLDKVKSEIQDFF 107 (357)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998755
No 8
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.76 E-value=1.4e-18 Score=138.08 Aligned_cols=87 Identities=26% Similarity=0.423 Sum_probs=71.7
Q ss_pred cHHHHHhcccCCCCCceecCCCcccCCC-C--CCCCCCcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCCCH
Q 046735 26 GVKGLVDARVAKVPRIFECEQSVVNLNS-G--NSSQLRVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGIPL 102 (117)
Q Consensus 26 ~v~~l~~~~~~~vP~~yv~p~~~~~~~~-~--~~~~~~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~ 102 (117)
-||+|. +++..||++|++|++ +++. . ......||+|||+.+.+ .++.+++++|++||++||||||+||||+.
T Consensus 7 ~~~~~~-~~~~~~p~~~~~~~~--~~~~~~~~~~~~~~iPvIDls~~~~--~~~~~~~~~l~~A~~~~GFf~v~nHGI~~ 81 (348)
T PLN02912 7 LVSDIA-SVVDHVPSNYVRPVS--DRPNMSEVETSGDSIPLIDLRDLHG--PNRADIINQFAHACSSYGFFQIKNHGVPE 81 (348)
T ss_pred HHHHHh-cCCCCCCHHhcCCch--hccccccccccCCCCCeEECcccCC--cCHHHHHHHHHHHHHHCCEEEEEeCCCCH
Confidence 577777 788999999999988 5552 1 11235799999998853 24778899999999999999999999999
Q ss_pred HHHHHHHHhhhccCC
Q 046735 103 SVLNDIKDGIRIPRA 117 (117)
Q Consensus 103 ~li~~~~~~~~~~~~ 117 (117)
+++++++++++.-|+
T Consensus 82 ~l~~~~~~~~~~FF~ 96 (348)
T PLN02912 82 ETIKKMMNVAREFFH 96 (348)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987553
No 9
>PLN02276 gibberellin 20-oxidase
Probab=99.74 E-value=2.5e-18 Score=137.13 Aligned_cols=79 Identities=25% Similarity=0.398 Sum_probs=66.4
Q ss_pred CCCCCceecCCCcccCCCCCCCCCCcCccCCCCCC-CCCchHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHhhhc
Q 046735 36 AKVPRIFECEQSVVNLNSGNSSQLRVPTIDPEGIH-KDPNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIKDGIRI 114 (117)
Q Consensus 36 ~~vP~~yv~p~~~~~~~~~~~~~~~iPvIDls~~~-~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~~~~~~ 114 (117)
.+||+.|++|++ ++|........||+|||+.+. +++..|.+++++|.+||++||||||+||||+.++++++++.++.
T Consensus 18 ~~vp~~~~~~~~--~~p~~~~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~ 95 (361)
T PLN02276 18 SNIPAQFIWPDE--EKPSAAVPELAVPLIDLGGFLSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHEYMDA 95 (361)
T ss_pred CCCCHHhcCCcc--ccCCCCCcCCCCCeEEChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 579999999998 665322233579999999886 35567888999999999999999999999999999999999886
Q ss_pred cC
Q 046735 115 PR 116 (117)
Q Consensus 115 ~~ 116 (117)
-|
T Consensus 96 FF 97 (361)
T PLN02276 96 FF 97 (361)
T ss_pred HH
Confidence 55
No 10
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=99.74 E-value=3.3e-18 Score=136.43 Aligned_cols=82 Identities=26% Similarity=0.384 Sum_probs=67.5
Q ss_pred ccCCCCCceecCCCcccCCCCC--CCCCCcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHh
Q 046735 34 RVAKVPRIFECEQSVVNLNSGN--SSQLRVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIKDG 111 (117)
Q Consensus 34 ~~~~vP~~yv~p~~~~~~~~~~--~~~~~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~~~ 111 (117)
+..+||.+|++|++ ++|... .....||+|||+.+.++...|.+++++|.+||++||||||+||||+.++++++++.
T Consensus 11 ~~~~~p~~~~~~~~--~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~ 88 (358)
T PLN02515 11 GESTLQSSFVRDED--ERPKVAYNQFSDEIPVISLAGIDEVGGRRGEICRKIVEACEDWGIFQVVDHGVDANLVADMTRL 88 (358)
T ss_pred CCCcCCHHhcCCch--hccCccccccCCCCCEEEChhccCCchHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHH
Confidence 46799999999988 665211 12346999999988643456788999999999999999999999999999999999
Q ss_pred hhccCC
Q 046735 112 IRIPRA 117 (117)
Q Consensus 112 ~~~~~~ 117 (117)
++.-|+
T Consensus 89 ~~~FF~ 94 (358)
T PLN02515 89 ARDFFA 94 (358)
T ss_pred HHHHhc
Confidence 987653
No 11
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.74 E-value=6.1e-18 Score=134.39 Aligned_cols=87 Identities=23% Similarity=0.360 Sum_probs=68.8
Q ss_pred HHHHHhcccCCCCCceecCCCcccC----CC-CCCCCCCcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCCC
Q 046735 27 VKGLVDARVAKVPRIFECEQSVVNL----NS-GNSSQLRVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGIP 101 (117)
Q Consensus 27 v~~l~~~~~~~vP~~yv~p~~~~~~----~~-~~~~~~~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~ 101 (117)
|+++++++ ..||++|++|+. .. +. .......||+|||+.+.++...+.+.+++|++||++||||||+||||+
T Consensus 9 ~~~~~~~~-~~~p~~~~~~~~--~~~~~~~~~~~~~~~~IPvIDls~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~ 85 (348)
T PLN00417 9 VQEVVAAG-EGLPERYLHTPT--GDGEGQPLNGAVPEMDIPAIDLSLLLSSSDDGREELSKLHSALSTWGVVQVMNHGIT 85 (348)
T ss_pred HHHHHhCC-CCCCccccCCcc--cccccccccccccCCCCCeEEChhhcCCCchHHHHHHHHHHHHHHCCEEEEEcCCCC
Confidence 88998776 699999999988 43 21 112334799999998763222344456999999999999999999999
Q ss_pred HHHHHHHHHhhhccC
Q 046735 102 LSVLNDIKDGIRIPR 116 (117)
Q Consensus 102 ~~li~~~~~~~~~~~ 116 (117)
.++++++++.++.-|
T Consensus 86 ~~l~~~~~~~~~~FF 100 (348)
T PLN00417 86 EAFLDKIYKLTKQFF 100 (348)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988655
No 12
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.74 E-value=4.6e-18 Score=134.39 Aligned_cols=82 Identities=22% Similarity=0.385 Sum_probs=68.7
Q ss_pred HHHHhccc--CCCCCceecCCCcccCCC--CCCCCCCcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCCCHH
Q 046735 28 KGLVDARV--AKVPRIFECEQSVVNLNS--GNSSQLRVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGIPLS 103 (117)
Q Consensus 28 ~~l~~~~~--~~vP~~yv~p~~~~~~~~--~~~~~~~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~ 103 (117)
+.|+++|+ .+||+.|++|++ ++|. .......||+|||+.. .+.+++++|.+||++||||||+||||+.+
T Consensus 3 ~~~~~~~~~~~~~p~~~~~~~~--~~p~~~~~~~~~~iPvIDls~~-----~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~ 75 (337)
T PLN02639 3 TKLLSTGIRHTTLPESYVRPES--ERPRLSEVSTCENVPVIDLGSP-----DRAQVVQQIGDACRRYGFFQVINHGVSAE 75 (337)
T ss_pred hhhhhhcCCcCcCCHHhcCCch--hcccccccccCCCCCeEECCCc-----cHHHHHHHHHHHHHhCCEEEEEcCCCCHH
Confidence 35788887 899999999998 5552 1123457999999853 36789999999999999999999999999
Q ss_pred HHHHHHHhhhccC
Q 046735 104 VLNDIKDGIRIPR 116 (117)
Q Consensus 104 li~~~~~~~~~~~ 116 (117)
+++++++.++.-|
T Consensus 76 l~~~~~~~~~~fF 88 (337)
T PLN02639 76 LVEKMLAVAHEFF 88 (337)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998755
No 13
>PLN02704 flavonol synthase
Probab=99.74 E-value=5.4e-18 Score=133.93 Aligned_cols=84 Identities=24% Similarity=0.425 Sum_probs=70.3
Q ss_pred cHHHHHhcc--cCCCCCceecCCCcccCCCC---CCCCCCcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCC
Q 046735 26 GVKGLVDAR--VAKVPRIFECEQSVVNLNSG---NSSQLRVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGI 100 (117)
Q Consensus 26 ~v~~l~~~~--~~~vP~~yv~p~~~~~~~~~---~~~~~~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI 100 (117)
+++.+++.+ ..+||++|++|++ ++|.. ......||+|||+.. ++.+++++|.+||++||||||+||||
T Consensus 5 ~~~~~~~~~~~~~~~p~~~~~~~~--~~p~~~~~~~~~~~iPvIDls~~-----~~~~~~~~l~~Ac~~~GFf~l~nHGI 77 (335)
T PLN02704 5 RVQAIASSSLLKETIPEEFIRSEK--EQPAITTFHGVDPQVPTIDLSDP-----DEEKLTRLIAEASKEWGMFQIVNHGI 77 (335)
T ss_pred hHHHHHhCCCCcCCCCHHHcCCcc--cccccccccccCCCCCeEECCCc-----cHHHHHHHHHHHHHHcCEEEEEcCCC
Confidence 688888865 7899999999998 66632 223457999999854 24678999999999999999999999
Q ss_pred CHHHHHHHHHhhhccC
Q 046735 101 PLSVLNDIKDGIRIPR 116 (117)
Q Consensus 101 ~~~li~~~~~~~~~~~ 116 (117)
+.++++++++.++.-|
T Consensus 78 ~~~l~~~~~~~~~~FF 93 (335)
T PLN02704 78 PSEVISKLQKVGKEFF 93 (335)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988755
No 14
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.69 E-value=5.4e-17 Score=128.68 Aligned_cols=77 Identities=25% Similarity=0.423 Sum_probs=63.6
Q ss_pred CCCCCceecCCCcccCCCCC--CCCCCcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHhhh
Q 046735 36 AKVPRIFECEQSVVNLNSGN--SSQLRVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIKDGIR 113 (117)
Q Consensus 36 ~~vP~~yv~p~~~~~~~~~~--~~~~~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~~~~~ 113 (117)
.++|..|++|++ ++|... .....||+|||+.+. ..++.+++++|.+||++||||||+||||+.++++++++.++
T Consensus 2 ~~~~~~~~~~~~--~~~~~~~~~~~~~iPvIDls~~~--~~~~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~ 77 (345)
T PLN02750 2 GEIDPAFIQAPE--HRPKFHLTNSDEEIPVIDLSVST--SHDKTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAK 77 (345)
T ss_pred CCCCHHHcCCch--hccCccccccCCCCCeEECCCCC--cccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHH
Confidence 478999999987 665211 123579999999853 34578899999999999999999999999999999999988
Q ss_pred ccC
Q 046735 114 IPR 116 (117)
Q Consensus 114 ~~~ 116 (117)
.-|
T Consensus 78 ~FF 80 (345)
T PLN02750 78 EFF 80 (345)
T ss_pred HHH
Confidence 655
No 15
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=99.68 E-value=4.6e-17 Score=129.86 Aligned_cols=73 Identities=30% Similarity=0.497 Sum_probs=59.3
Q ss_pred ccCCCCCceecCCCcccC--CCC----CCCCCCcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHH
Q 046735 34 RVAKVPRIFECEQSVVNL--NSG----NSSQLRVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGIPLSVLND 107 (117)
Q Consensus 34 ~~~~vP~~yv~p~~~~~~--~~~----~~~~~~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~ 107 (117)
+..+||++|++|++ ++ +.. ......||+|||+.. ..+++|++||++||||||+||||+.+++++
T Consensus 26 ~~~~vp~~~v~p~~--~~~~~~~~~~~~~~~~~iPvIDl~~~--------~~~~~l~~Ac~~~GFF~vvnHGI~~~l~~~ 95 (358)
T PLN02254 26 SLQTLPDSHVWTPK--DDLLFSSAPSPSTTDESIPVIDLSDP--------NALTLIGHACETWGVFQVTNHGIPLSLLDD 95 (358)
T ss_pred hhccCChhhcCChh--hccCccccccccCcCCCCCeEeCCCH--------HHHHHHHHHHHHCCEEEEEcCCCCHHHHHH
Confidence 34689999999998 55 311 122357999999732 368999999999999999999999999999
Q ss_pred HHHhhhccC
Q 046735 108 IKDGIRIPR 116 (117)
Q Consensus 108 ~~~~~~~~~ 116 (117)
+++.++.-|
T Consensus 96 ~~~~~~~FF 104 (358)
T PLN02254 96 IESQTRRLF 104 (358)
T ss_pred HHHHHHHHH
Confidence 999988655
No 16
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.65 E-value=6.8e-17 Score=108.84 Aligned_cols=53 Identities=36% Similarity=0.751 Sum_probs=46.6
Q ss_pred cCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHhhhccC
Q 046735 61 VPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIKDGIRIPR 116 (117)
Q Consensus 61 iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~~~~~~~~ 116 (117)
||||||+. +...|.+++++|.+||++||||||+||||+.+++++++++++.-|
T Consensus 1 iPvIDls~---~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF 53 (116)
T PF14226_consen 1 IPVIDLSP---DPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFF 53 (116)
T ss_dssp --EEEHGG---CHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHH
T ss_pred CCeEECCC---CCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHH
Confidence 79999987 356789999999999999999999999999999999999987644
No 17
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=99.63 E-value=5.1e-16 Score=122.46 Aligned_cols=60 Identities=42% Similarity=0.767 Sum_probs=51.1
Q ss_pred CCCCcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHhhhccC
Q 046735 57 SQLRVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIKDGIRIPR 116 (117)
Q Consensus 57 ~~~~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~~~~~~~~ 116 (117)
....||+|||+.+.++...+..++++|++||++||||||+||||+.++++++++.++--|
T Consensus 14 ~~~~iPvIDls~~~~~~~~~~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF 73 (322)
T KOG0143|consen 14 SELDIPVIDLSCLDSDDPGREEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFF 73 (322)
T ss_pred cCCCcCeEECCCCCCcchhHHHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHh
Confidence 356799999998763212688899999999999999999999999999999999887544
No 18
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=99.56 E-value=4.8e-15 Score=116.02 Aligned_cols=56 Identities=29% Similarity=0.592 Sum_probs=50.0
Q ss_pred CcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHhhhccCC
Q 046735 60 RVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIKDGIRIPRA 117 (117)
Q Consensus 60 ~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~~~~~~~~~ 117 (117)
+||+|||+.+. +..|.+++++|++||++||||||+||||+.++++++++.++..|+
T Consensus 2 ~iPvIDls~~~--~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~ 57 (303)
T PLN02403 2 EIPVIDFDQLD--GEKRSKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYE 57 (303)
T ss_pred CCCeEeCccCC--cccHHHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 59999999875 346788999999999999999999999999999999999887653
No 19
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=99.54 E-value=8.9e-15 Score=115.19 Aligned_cols=57 Identities=26% Similarity=0.598 Sum_probs=50.2
Q ss_pred CCCcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHhhhccC
Q 046735 58 QLRVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIKDGIRIPR 116 (117)
Q Consensus 58 ~~~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~~~~~~~~ 116 (117)
...||+|||+.+. +.++.+++++|++||++||||||+||||+.++++++++.++.-|
T Consensus 4 ~~~iPvIDls~~~--~~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF 60 (321)
T PLN02299 4 MESFPVIDMEKLN--GEERAATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHY 60 (321)
T ss_pred CCCCCEEECcCCC--cccHHHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 3469999999875 34577899999999999999999999999999999999988655
No 20
>PTZ00273 oxidase reductase; Provisional
Probab=99.54 E-value=7.8e-15 Score=115.04 Aligned_cols=58 Identities=19% Similarity=0.466 Sum_probs=51.4
Q ss_pred CCcCccCCCCCCC-CCchHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHhhhccC
Q 046735 59 LRVPTIDPEGIHK-DPNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIKDGIRIPR 116 (117)
Q Consensus 59 ~~iPvIDls~~~~-~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~~~~~~~~ 116 (117)
..||+|||+.+.+ ++..+.+++++|.+||++||||||+||||+.++++++++.++.-|
T Consensus 4 ~~iPvIDl~~~~~~~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF 62 (320)
T PTZ00273 4 ASLPVIDVSPLFGGESAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFF 62 (320)
T ss_pred CCCCEEecHHhcCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 4699999998863 455678899999999999999999999999999999999988655
No 21
>PLN02485 oxidoreductase
Probab=99.51 E-value=1.8e-14 Score=113.47 Aligned_cols=58 Identities=24% Similarity=0.398 Sum_probs=49.8
Q ss_pred CCcCccCCCCCCC---C-----CchHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHhhhccC
Q 046735 59 LRVPTIDPEGIHK---D-----PNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIKDGIRIPR 116 (117)
Q Consensus 59 ~~iPvIDls~~~~---~-----~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~~~~~~~~ 116 (117)
..||+|||+.+.+ + +..+.+++++|.+||++||||||+||||+.+++++++++++.-|
T Consensus 6 ~~iPvIDl~~l~~~~~~~~~~~~~~~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF 71 (329)
T PLN02485 6 KSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFF 71 (329)
T ss_pred CCCCeEechhhhccCcccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 4699999998742 1 22467789999999999999999999999999999999998755
No 22
>PLN02997 flavonol synthase
Probab=99.49 E-value=4.8e-14 Score=111.28 Aligned_cols=54 Identities=31% Similarity=0.527 Sum_probs=47.8
Q ss_pred CCCcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHhhhccC
Q 046735 58 QLRVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIKDGIRIPR 116 (117)
Q Consensus 58 ~~~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~~~~~~~~ 116 (117)
...||+|||+.+ ++..++++|++||++||||||+||||+.++++++++.++.-|
T Consensus 30 ~~~IPvIDls~~-----~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF 83 (325)
T PLN02997 30 AVDVPVVDLSVS-----DEDFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFF 83 (325)
T ss_pred CCCCCeEECCCC-----CHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 457999999864 256789999999999999999999999999999999988655
No 23
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=99.47 E-value=7.9e-14 Score=110.52 Aligned_cols=51 Identities=29% Similarity=0.488 Sum_probs=43.8
Q ss_pred CCcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHhhhccCC
Q 046735 59 LRVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIKDGIRIPRA 117 (117)
Q Consensus 59 ~~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~~~~~~~~~ 117 (117)
..||+|||+.. +..++|.+||++||||||+||||+.++++++++.++.-|+
T Consensus 25 ~~iPvIDls~~--------~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~ 75 (335)
T PLN02156 25 VLIPVIDLTDS--------DAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFA 75 (335)
T ss_pred CCCCcccCCCh--------HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHc
Confidence 35999999732 2367999999999999999999999999999999987653
No 24
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=99.42 E-value=2.5e-13 Score=106.32 Aligned_cols=58 Identities=26% Similarity=0.470 Sum_probs=53.0
Q ss_pred CCcCccCCCCCC-CCCchHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHhhhccC
Q 046735 59 LRVPTIDPEGIH-KDPNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIKDGIRIPR 116 (117)
Q Consensus 59 ~~iPvIDls~~~-~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~~~~~~~~ 116 (117)
..||+|||+.+. +++..|..++++|++||++||||||+||||+..+++++++.+|.=|
T Consensus 4 ~~lp~idls~~~~~~~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFF 62 (322)
T COG3491 4 RDLPIIDLSELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFF 62 (322)
T ss_pred CcCceeccHHhcCCCcHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 469999999987 4677999999999999999999999999999999999999998654
No 25
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=99.42 E-value=1.7e-13 Score=106.88 Aligned_cols=52 Identities=37% Similarity=0.705 Sum_probs=45.5
Q ss_pred CCcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHhhhccCC
Q 046735 59 LRVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIKDGIRIPRA 117 (117)
Q Consensus 59 ~~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~~~~~~~~~ 117 (117)
..||+|||+.+. ..+++|++||++||||||+||||+.++++++++.++.-|+
T Consensus 4 ~~iPvIDls~~~-------~~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~ 55 (300)
T PLN02365 4 VNIPTIDLEEFP-------GQIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFD 55 (300)
T ss_pred CCCCEEEChhhH-------HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHc
Confidence 459999999762 2358999999999999999999999999999999987663
No 26
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.41 E-value=3e-13 Score=106.90 Aligned_cols=54 Identities=24% Similarity=0.309 Sum_probs=47.1
Q ss_pred CCCcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHhhhccC
Q 046735 58 QLRVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIKDGIRIPR 116 (117)
Q Consensus 58 ~~~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~~~~~~~~ 116 (117)
...||+|||+.. .+..++++|.+||++||||||+||||+.++++++++.++.-|
T Consensus 12 ~~~iP~IDl~~~-----~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF 65 (332)
T PLN03002 12 VSSLNCIDLAND-----DLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFF 65 (332)
T ss_pred CCCCCEEeCCch-----hHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 347999999842 356789999999999999999999999999999999988655
No 27
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.40 E-value=4e-13 Score=106.75 Aligned_cols=50 Identities=30% Similarity=0.682 Sum_probs=44.1
Q ss_pred CCCcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHhhhccC
Q 046735 58 QLRVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIKDGIRIPR 116 (117)
Q Consensus 58 ~~~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~~~~~~~~ 116 (117)
...||+|||+.+ ..++|++||++||||||+||||+.++++++++.++.-|
T Consensus 36 ~~~IPvIDls~~---------~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF 85 (341)
T PLN02984 36 DIDIPVIDMECL---------DMEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLL 85 (341)
T ss_pred cCCCCeEeCcHH---------HHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 445999999854 25799999999999999999999999999999988655
No 28
>PRK08130 putative aldolase; Validated
Probab=74.84 E-value=5.1 Score=29.64 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=27.7
Q ss_pred CcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCC
Q 046735 60 RVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGI 100 (117)
Q Consensus 60 ~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI 100 (117)
.||++++... .-.++++.+.+++++...+.+.|||+
T Consensus 127 ~i~v~~y~~~-----g~~~la~~~~~~l~~~~~vll~nHGv 162 (213)
T PRK08130 127 HVPLIPYYRP-----GDPAIAEALAGLAARYRAVLLANHGP 162 (213)
T ss_pred ccceECCCCC-----ChHHHHHHHHHHhccCCEEEEcCCCC
Confidence 4777766432 23468888999999999999999995
No 29
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=74.63 E-value=4.6 Score=29.12 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=27.6
Q ss_pred CcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCC
Q 046735 60 RVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGI 100 (117)
Q Consensus 60 ~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI 100 (117)
.+|++++... .-.++++.+.+++++...+.+.|||+
T Consensus 120 ~v~v~~~~~~-----g~~~la~~~~~~l~~~~~vll~nHGv 155 (184)
T PRK08333 120 KIPILPFRPA-----GSVELAEQVAEAMKEYDAVIMERHGI 155 (184)
T ss_pred CEeeecCCCC-----CcHHHHHHHHHHhccCCEEEEcCCCC
Confidence 4777776532 23467888888988888999999995
No 30
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=68.66 E-value=19 Score=24.74 Aligned_cols=39 Identities=15% Similarity=0.484 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHhhh
Q 046735 75 TRTEIINKVKNASEEWGFFQVIS-HGIPLSVLNDIKDGIR 113 (117)
Q Consensus 75 ~r~~~~~~l~~A~~~~GFf~v~n-HGI~~~li~~~~~~~~ 113 (117)
.+...++++.+.++++.++++++ +|++...+.++....+
T Consensus 2 ~K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~ 41 (155)
T cd00379 2 KKEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELR 41 (155)
T ss_pred chHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHH
Confidence 35678899999999998888887 5799988888876543
No 31
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=66.90 E-value=21 Score=25.47 Aligned_cols=39 Identities=15% Similarity=0.445 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHhhh
Q 046735 75 TRTEIINKVKNASEEWGFFQVIS-HGIPLSVLNDIKDGIR 113 (117)
Q Consensus 75 ~r~~~~~~l~~A~~~~GFf~v~n-HGI~~~li~~~~~~~~ 113 (117)
.+.+.+++|.+.+.++-.++|++ +|++...++++.+..|
T Consensus 2 ~K~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr 41 (163)
T cd05796 2 LKQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWK 41 (163)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhc
Confidence 35678889999999988777765 7899998888887654
No 32
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=66.72 E-value=3 Score=34.58 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=32.4
Q ss_pred CCCcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHh
Q 046735 58 QLRVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIKDG 111 (117)
Q Consensus 58 ~~~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~~~ 111 (117)
..-||.|||+.+.. ..+.++..+..++.|.+.|.|+ ||.+......+.
T Consensus 47 ~~~IP~i~f~di~~-----~~~~~~~~~~ir~rG~~VIR~V-vp~~ea~~w~~e 94 (416)
T PF07350_consen 47 SSIIPEIDFADIEN-----GGVSEEFLAEIRRRGCVVIRGV-VPREEALAWKQE 94 (416)
T ss_dssp --SS-EEEHHHHHC-----T---HHHHHHHHHHSEEEECTS-S-HHHHHHHHHH
T ss_pred CCCCceeeHHHHhC-----CCCCHHHHHHHHhcCEEEEeCC-CCHHHHHHHHHH
Confidence 34699999987752 1245777888899999999998 888877766543
No 33
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=64.26 E-value=9.8 Score=28.43 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=26.5
Q ss_pred cCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCC
Q 046735 61 VPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGI 100 (117)
Q Consensus 61 iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI 100 (117)
+|++++... .-.++++.+.+++.+...+.+.|||+
T Consensus 128 v~~~~y~~~-----gs~ela~~v~~~l~~~~~vlL~nHGv 162 (217)
T PRK05874 128 VRCTEYAAS-----GTPEVGRNAVRALEGRAAALIANHGL 162 (217)
T ss_pred eeeecCCCC-----CcHHHHHHHHHHhCcCCEEEEcCCCC
Confidence 555555422 23578889999999999999999996
No 34
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=64.01 E-value=12 Score=27.62 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhcceEEEEcCCC
Q 046735 76 RTEIINKVKNASEEWGFFQVISHGI 100 (117)
Q Consensus 76 r~~~~~~l~~A~~~~GFf~v~nHGI 100 (117)
-.++.+.+.+++.+...+.+-|||+
T Consensus 135 s~~la~~v~~~l~~~~~vll~nHGv 159 (214)
T PRK06833 135 TKELAENAFEAMEDRRAVLLANHGL 159 (214)
T ss_pred hHHHHHHHHHHhCcCCEEEECCCCC
Confidence 3467788888888889999999995
No 35
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=61.28 E-value=30 Score=24.94 Aligned_cols=38 Identities=13% Similarity=0.322 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHhhh
Q 046735 76 RTEIINKVKNASEEWGFFQVIS-HGIPLSVLNDIKDGIR 113 (117)
Q Consensus 76 r~~~~~~l~~A~~~~GFf~v~n-HGI~~~li~~~~~~~~ 113 (117)
+.+.+++|.+.+.++.+++|++ .|++...+.++.+..+
T Consensus 3 K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr 41 (175)
T cd05795 3 KKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLR 41 (175)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhh
Confidence 5677888888888888777775 7888888888877654
No 36
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=60.25 E-value=24 Score=28.07 Aligned_cols=40 Identities=20% Similarity=0.459 Sum_probs=33.5
Q ss_pred chHHHHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHhhh
Q 046735 74 NTRTEIINKVKNASEEWGFFQVIS-HGIPLSVLNDIKDGIR 113 (117)
Q Consensus 74 ~~r~~~~~~l~~A~~~~GFf~v~n-HGI~~~li~~~~~~~~ 113 (117)
+.+.+.+++|.+.+.++.+++|++ +|++...++++.+..|
T Consensus 6 e~K~~~v~el~~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr 46 (330)
T PRK04019 6 EWKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLR 46 (330)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHH
Confidence 456778999999999999888887 7899999998887654
No 37
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=58.34 E-value=15 Score=27.24 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=25.3
Q ss_pred cCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCC
Q 046735 61 VPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGI 100 (117)
Q Consensus 61 iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI 100 (117)
+|++.+... .-.++++.+.+++.+...+.+-|||+
T Consensus 123 v~~~~y~~~-----gs~~la~~~~~~l~~~~~vLl~nHGv 157 (215)
T PRK08087 123 IPCAPYATF-----GTRELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_pred ceeecCCCC-----CCHHHHHHHHHHhCcCCEEEecCCCC
Confidence 666655432 22467788888888888999999995
No 38
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=58.33 E-value=25 Score=27.14 Aligned_cols=39 Identities=18% Similarity=0.367 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHHHHhcce--EEEEc-CCCCHHHHHHHHHhh
Q 046735 74 NTRTEIINKVKNASEEWGF--FQVIS-HGIPLSVLNDIKDGI 112 (117)
Q Consensus 74 ~~r~~~~~~l~~A~~~~GF--f~v~n-HGI~~~li~~~~~~~ 112 (117)
+.-..+...+.+++..+|| |+++| ||=....+..+.+..
T Consensus 86 ~t~~~~~~~~~~Sl~~~Gfrk~v~vNgHGGN~~~l~~v~~el 127 (250)
T COG1402 86 ETLIALLVELVESLARHGFRKFVIVNGHGGNSAALEIVAREL 127 (250)
T ss_pred HHHHHHHHHHHHHHHhcCccEEEEEecCCCcHHHHHHHHHHH
Confidence 3445678899999999999 66665 887766666655543
No 39
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=56.04 E-value=36 Score=26.40 Aligned_cols=35 Identities=26% Similarity=0.477 Sum_probs=30.0
Q ss_pred HHHHHHHhcceEEEEcCCCCHHHHHHHHHhhhccC
Q 046735 82 KVKNASEEWGFFQVISHGIPLSVLNDIKDGIRIPR 116 (117)
Q Consensus 82 ~l~~A~~~~GFf~v~nHGI~~~li~~~~~~~~~~~ 116 (117)
+-..++++.|.|.|+=-+++.+++.++-+...+|-
T Consensus 165 ~ra~a~~eAGA~~i~lE~v~~~~~~~i~~~l~iP~ 199 (264)
T PRK00311 165 EDAKALEEAGAFALVLECVPAELAKEITEALSIPT 199 (264)
T ss_pred HHHHHHHHCCCCEEEEcCCCHHHHHHHHHhCCCCE
Confidence 34567889999999999999999999988888773
No 40
>TIGR01086 fucA L-fuculose phosphate aldolase. Members of this family are L-fuculose phosphate aldolase from various Proteobacteria, encoded in fucose utilization operons. Homologs in other bacteria given similar annotation may share extensive sequence similarity but are not experimenally characterized and are not found in apparent fucose utilization operons; we consider their annotation as L-fuculose phosphate aldolase to be tenuous. This model has been narrowed in scope from the previous version.
Probab=55.88 E-value=19 Score=26.64 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCC
Q 046735 77 TEIINKVKNASEEWGFFQVISHGI 100 (117)
Q Consensus 77 ~~~~~~l~~A~~~~GFf~v~nHGI 100 (117)
.++++.+.+++.+..-+.|-|||+
T Consensus 133 ~~la~~v~~~~~~~~~vLL~nHG~ 156 (214)
T TIGR01086 133 TKLASEVVAGILKSKAILLLHHGL 156 (214)
T ss_pred HHHHHHHHHHhhhCCEEehhcCCC
Confidence 456778888888889999999995
No 41
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=55.35 E-value=38 Score=26.39 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=30.2
Q ss_pred HHHHHHHhcceEEEEcCCCCHHHHHHHHHhhhccC
Q 046735 82 KVKNASEEWGFFQVISHGIPLSVLNDIKDGIRIPR 116 (117)
Q Consensus 82 ~l~~A~~~~GFf~v~nHGI~~~li~~~~~~~~~~~ 116 (117)
+-..++++.|.|.|+=-+|+.++..++-+...+|-
T Consensus 164 ~~A~a~e~AGA~~ivlE~vp~~~a~~It~~l~iP~ 198 (263)
T TIGR00222 164 EDALALEEAGAQLLVLECVPVELAAKITEALAIPV 198 (263)
T ss_pred HHHHHHHHcCCCEEEEcCCcHHHHHHHHHhCCCCE
Confidence 33467889999999999999999999998888873
No 42
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=54.62 E-value=13 Score=25.62 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCCC
Q 046735 77 TEIINKVKNASEEWGFFQVISHGIP 101 (117)
Q Consensus 77 ~~~~~~l~~A~~~~GFf~v~nHGI~ 101 (117)
+.+...|..++|+|||-.+.++.-.
T Consensus 35 d~Fg~aL~~~LR~~GYaV~e~~~~~ 59 (121)
T PF07283_consen 35 DPFGQALENALRAKGYAVIEDDPPD 59 (121)
T ss_pred ChHHHHHHHHHHhcCcEEEecCCcc
Confidence 3689999999999999999988654
No 43
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=53.49 E-value=41 Score=27.19 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=30.4
Q ss_pred HHHHHHHhcceEEEEcCCCCHHHHHHHHHhhhccC
Q 046735 82 KVKNASEEWGFFQVISHGIPLSVLNDIKDGIRIPR 116 (117)
Q Consensus 82 ~l~~A~~~~GFf~v~nHGI~~~li~~~~~~~~~~~ 116 (117)
+-..++++.|.|.|+=-||+.++..++-+...+|-
T Consensus 186 ~dA~ale~AGAf~ivLE~Vp~~la~~It~~l~IPt 220 (332)
T PLN02424 186 ETALALQEAGCFAVVLECVPAPVAAAITSALQIPT 220 (332)
T ss_pred HHHHHHHHcCCcEEEEcCCcHHHHHHHHHhCCCCE
Confidence 34567889999999999999999999999888873
No 44
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=53.48 E-value=50 Score=23.01 Aligned_cols=39 Identities=21% Similarity=0.412 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHhhh
Q 046735 75 TRTEIINKVKNASEEWGFFQVIS-HGIPLSVLNDIKDGIR 113 (117)
Q Consensus 75 ~r~~~~~~l~~A~~~~GFf~v~n-HGI~~~li~~~~~~~~ 113 (117)
.+...++++.+.+++..++++++ +|++...+.++....+
T Consensus 4 ~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr 43 (157)
T cd05797 4 KKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELR 43 (157)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHH
Confidence 45677888888888887777776 5788888887776544
No 45
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus. These proteins form part of a family that includes: rhamnulose-1-phosphate aldolase (4.1.2.19 from EC), L-fuculose phosphate aldolase (4.1.2.17 from EC) [, ] that is involved in the third step in fucose metabolism, L-ribulose- 5-phosphate 4-epimerase (5.1.3.4 from EC) involved in the third step of L-arabinose catabolism, a probable sugar isomerase SgbE, hypothetical proteins and the metazoan adducins which have not been ascribed any enzymatic function but which play a role in cell membrane cytoskeleton organisation. Adducins are members of the Ig superfamily and encode cell surface sialoglycoproteins expressed by cytokine-activated endothelium. This type I membrane protein mediates leukocyte-endothelial cell adhesion and signal transduction, and may play a role in the development of artherosclerosis and rheumatoid arthritis. Adducin is a cell-membrane skeletal protein that was first purified from human erythrocytes and subsequently isolated from bovine brain membranes. Isoforms of this protein have been detected in lung, kidney, testes and liver. Erythrocyte adducin is a 200kDa heterodimer protein, composed of alpha and beta subunits, present at about 30,000 copies per cell. It binds with high affinity to Ca(2+)/calmodulin and is a substrate for protein kinases A and C. Both alpha-adducin and beta-adducin show alternative splicing. Thus, there may be several different heterodimeric or homodimeric forms of adducin, each with a different functional specificity. It is thought to play a role in assembly of the spectrin-actin lattice that underlies the plasma membrane []. Missense mutations in both the alpha- and beta-adducin genes that alter amino acids that are normally phosphorylated have been associated with the regulation of blood pressure in the Milan hypertensive strain (MHS) of rats. Gamma adducin was isolated from human foetal brain []. It shows a high degree of similarity to the alpha and beta adducins.; GO: 0046872 metal ion binding; PDB: 2V9N_B 1GT7_B 2V9O_E 2V9M_B 2V9F_A 2UYV_A 1OJR_A 2V9G_C 2V29_B 2V9I_A ....
Probab=53.43 E-value=7.5 Score=27.67 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=26.8
Q ss_pred CCcCccCCCCCCCCCchHHHHHHHHHHHHH-hcceEEEEcCCC
Q 046735 59 LRVPTIDPEGIHKDPNTRTEIINKVKNASE-EWGFFQVISHGI 100 (117)
Q Consensus 59 ~~iPvIDls~~~~~~~~r~~~~~~l~~A~~-~~GFf~v~nHGI 100 (117)
..+|+++..... -.++.+.+.++++ +...+.+.|||+
T Consensus 122 ~~v~~~~~~~~~-----~~~l~~~i~~~l~~~~~~vll~nHG~ 159 (184)
T PF00596_consen 122 GEVPVVPYAPPG-----SEELAEAIAEALGEDRKAVLLRNHGV 159 (184)
T ss_dssp SCEEEE-THSTT-----CHHHHHHHHHHHTCTSSEEEETTTEE
T ss_pred ccceeecccccc-----chhhhhhhhhhhcCCceEEeecCCce
Confidence 457887775421 2355788888888 889999999994
No 46
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=53.05 E-value=21 Score=28.43 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=35.6
Q ss_pred CCcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHH
Q 046735 59 LRVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIK 109 (117)
Q Consensus 59 ~~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~ 109 (117)
..+|.+|++.+.. ....+.++.+++.++|++.+.|-.++.+.+.++-
T Consensus 108 ~~~~~~d~~~~~~----~~~~~~~~~~~l~~~G~v~~rg~~~~~~~~~~~~ 154 (366)
T TIGR02409 108 LSLPKFDHEAVMK----DDSVLLDWLSAVRDVGIAVLKGAPTKPGAVEKLG 154 (366)
T ss_pred ccCCceeHHHHhC----CHHHHHHHHHHHHhccEEEEeCCCCCHHHHHHHH
Confidence 4578888876542 2345778999999999999999999887665554
No 47
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=52.90 E-value=19 Score=26.64 Aligned_cols=36 Identities=14% Similarity=0.059 Sum_probs=24.8
Q ss_pred CcCccCCCCCCCCCchHHHHHHHHHHHH--HhcceEEEEcCCC
Q 046735 60 RVPTIDPEGIHKDPNTRTEIINKVKNAS--EEWGFFQVISHGI 100 (117)
Q Consensus 60 ~iPvIDls~~~~~~~~r~~~~~~l~~A~--~~~GFf~v~nHGI 100 (117)
.||++..... ...+..+.+.+++ .+...+.+-|||+
T Consensus 130 ~ip~~~y~~~-----g~~ela~~i~~~l~~~~~~~vll~nHG~ 167 (221)
T PRK06557 130 PIPVGPFALI-----GDEAIGKGIVETLKGGRSPAVLMQNHGV 167 (221)
T ss_pred CeeccCCcCC-----CcHHHHHHHHHHhCcCCCCEEEECCCCc
Confidence 4666554422 2346677888888 6778899999995
No 48
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=52.72 E-value=18 Score=28.04 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=25.5
Q ss_pred cCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCC
Q 046735 61 VPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGI 100 (117)
Q Consensus 61 iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI 100 (117)
||++.+... .-.++++.+.+++++...+.+-|||+
T Consensus 180 i~vvpy~~p-----gs~eLa~~v~~~l~~~~avLL~nHGv 214 (274)
T PRK03634 180 VGIVPWMVP-----GTDEIGQATAEKMQKHDLVLWPKHGV 214 (274)
T ss_pred eeEecCCCC-----CCHHHHHHHHHHhccCCEEEEcCCCC
Confidence 556555422 23467888888888889999999996
No 49
>PF11243 DUF3045: Protein of unknown function (DUF3045); InterPro: IPR021405 This entry is represented by Bacteriophage T4, Gp30.1; it is a family of uncharacterised viral proteins.
Probab=52.60 E-value=22 Score=23.00 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=16.9
Q ss_pred HHHHHHHHhcceEEEEcCCCC
Q 046735 81 NKVKNASEEWGFFQVISHGIP 101 (117)
Q Consensus 81 ~~l~~A~~~~GFf~v~nHGI~ 101 (117)
..+..-|-+.||.||..|-+.
T Consensus 36 ~~if~eCVeqGFiYVs~~~~~ 56 (89)
T PF11243_consen 36 EPIFKECVEQGFIYVSKYWMD 56 (89)
T ss_pred cHHHHHHHhcceEEEEeeeec
Confidence 356777999999999888665
No 50
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=52.50 E-value=59 Score=20.67 Aligned_cols=39 Identities=15% Similarity=0.424 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHHHhcceEEEE-cCCCCHHHHHHHHHhh
Q 046735 74 NTRTEIINKVKNASEEWGFFQVI-SHGIPLSVLNDIKDGI 112 (117)
Q Consensus 74 ~~r~~~~~~l~~A~~~~GFf~v~-nHGI~~~li~~~~~~~ 112 (117)
+.+...++++.+.+.++-++.++ .+|++...+.++....
T Consensus 4 ~~K~~~v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l 43 (100)
T PF00466_consen 4 EKKEEIVEELKELLKKSKYVIVVDYNGLSANQLQELRKEL 43 (100)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 35677888999999888555555 4789988888877654
No 51
>PRK05834 hypothetical protein; Provisional
Probab=52.19 E-value=22 Score=26.06 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcc--eEEEEcCCC
Q 046735 78 EIINKVKNASEEWG--FFQVISHGI 100 (117)
Q Consensus 78 ~~~~~l~~A~~~~G--Ff~v~nHGI 100 (117)
...+.+.+++++.. .+.+.|||+
T Consensus 136 ~la~~v~~~l~~~~~~avLL~nHGv 160 (194)
T PRK05834 136 RADTEILRYLQEKNKNFVVIKGYGV 160 (194)
T ss_pred hHHHHHHHHHhhcCCCEEEEcCCcc
Confidence 34667888887755 999999995
No 52
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=52.16 E-value=48 Score=24.02 Aligned_cols=40 Identities=15% Similarity=0.393 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHhhh
Q 046735 74 NTRTEIINKVKNASEEWGFFQVIS-HGIPLSVLNDIKDGIR 113 (117)
Q Consensus 74 ~~r~~~~~~l~~A~~~~GFf~v~n-HGI~~~li~~~~~~~~ 113 (117)
+.+.+.+..|.+.+++...|.+++ +|++...+.++....|
T Consensus 6 e~K~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr 46 (175)
T COG0244 6 EWKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLR 46 (175)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHH
Confidence 356778899999999888777777 7999998888877654
No 53
>PRK06755 hypothetical protein; Validated
Probab=51.17 E-value=15 Score=27.42 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=26.4
Q ss_pred CcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCC
Q 046735 60 RVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGI 100 (117)
Q Consensus 60 ~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI 100 (117)
.||+|+.... ....+.+.+.++.++...+.|-|||+
T Consensus 136 ~IPiv~~~~~-----~~~~la~~~~~~~~~~~avLl~~HGv 171 (209)
T PRK06755 136 TIPIVEDEKK-----FADLLENNVPNFIEGGGVVLVHNYGM 171 (209)
T ss_pred EEEEEeCCCc-----hhHHHHHHHHhhccCCCEEEEcCCCe
Confidence 5888876432 22556677777778888999999995
No 54
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Members of this family are the enzyme RhaD, rhamnulose-1-phosphate aldolase.
Probab=50.97 E-value=21 Score=27.73 Aligned_cols=36 Identities=22% Similarity=0.065 Sum_probs=26.8
Q ss_pred CcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCC
Q 046735 60 RVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGI 100 (117)
Q Consensus 60 ~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI 100 (117)
.||++.+... .-.++++.+.+++++..-+.+.|||+
T Consensus 177 ~i~vvp~~~p-----Gs~eLA~~v~~~l~~~~avLL~nHGv 212 (270)
T TIGR02624 177 GVGIIPWMVP-----GTNEIGEATAEKMKEHRLVLWPHHGI 212 (270)
T ss_pred ccccccCcCC-----CCHHHHHHHHHHhccCCEEEEcCCCC
Confidence 3666655432 23478888999999888999999995
No 55
>PRK06357 hypothetical protein; Provisional
Probab=50.27 E-value=28 Score=25.92 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhc------ceEEEEcCCC
Q 046735 77 TEIINKVKNASEEW------GFFQVISHGI 100 (117)
Q Consensus 77 ~~~~~~l~~A~~~~------GFf~v~nHGI 100 (117)
.++++.+.+++++. ..+.+.|||+
T Consensus 142 ~ela~~v~~~l~~~~~~~~~~~vLl~nHGv 171 (216)
T PRK06357 142 PELAEIVRKHLIELGDKAVPSAFLLNSHGI 171 (216)
T ss_pred HHHHHHHHHHHhhcCcccCCCEEEECCCCC
Confidence 57778888888764 5899999995
No 56
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=49.89 E-value=21 Score=25.54 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhcceEEEEc
Q 046735 77 TEIINKVKNASEEWGFFQVIS 97 (117)
Q Consensus 77 ~~~~~~l~~A~~~~GFf~v~n 97 (117)
..+...|..++|.|||-.+.+
T Consensus 68 d~Fg~aL~~aLr~~GYaVvtd 88 (145)
T PRK13835 68 SPFGQALEAALKGWGYAVVTD 88 (145)
T ss_pred cHHHHHHHHHHHhcCeEEeec
Confidence 479999999999999999984
No 57
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=48.01 E-value=32 Score=24.98 Aligned_cols=50 Identities=16% Similarity=0.204 Sum_probs=40.3
Q ss_pred cCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEE--------------cCCCCHHHHHHHHHhhhccC
Q 046735 61 VPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVI--------------SHGIPLSVLNDIKDGIRIPR 116 (117)
Q Consensus 61 iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~--------------nHGI~~~li~~~~~~~~~~~ 116 (117)
..||-.|.| +....+.|+.+|.+..|+||. ||-++.++++.-|+....|-
T Consensus 69 ~~vi~CSAL------Kr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll~SQfa~LE~P~ 132 (161)
T COG3265 69 HVVIACSAL------KRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHFMPASLLDSQFATLEEPG 132 (161)
T ss_pred ceEEecHHH------HHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCCCHHHHHHHHHHhcCCC
Confidence 355666554 456778899999999999996 79999999999999887774
No 58
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=47.42 E-value=67 Score=22.79 Aligned_cols=39 Identities=13% Similarity=0.329 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHhhh
Q 046735 75 TRTEIINKVKNASEEWGFFQVIS-HGIPLSVLNDIKDGIR 113 (117)
Q Consensus 75 ~r~~~~~~l~~A~~~~GFf~v~n-HGI~~~li~~~~~~~~ 113 (117)
.+.+.++++.+.++++-++++++ +|++...+.++....+
T Consensus 5 ~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr 44 (172)
T PRK00099 5 EKKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLR 44 (172)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHH
Confidence 45677888888888887666666 4788877777766544
No 59
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=46.79 E-value=23 Score=25.42 Aligned_cols=23 Identities=9% Similarity=0.034 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhcceEEEEcCC
Q 046735 77 TEIINKVKNASEEWGFFQVISHG 99 (117)
Q Consensus 77 ~~~~~~l~~A~~~~GFf~v~nHG 99 (117)
+.+...|..++|+|||-.+.+-.
T Consensus 63 D~Fg~aL~~aLR~~GYaV~e~~~ 85 (151)
T PRK13883 63 DAFGQALVKALRDKGYALLEYNP 85 (151)
T ss_pred cHHHHHHHHHHHHcCeEEEecCC
Confidence 46999999999999999998654
No 60
>PRK08660 L-fuculose phosphate aldolase; Provisional
Probab=45.87 E-value=28 Score=24.90 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCC
Q 046735 77 TEIINKVKNASEEWGFFQVISHGI 100 (117)
Q Consensus 77 ~~~~~~l~~A~~~~GFf~v~nHGI 100 (117)
.++++.+.+++.+.-.+.+.|||+
T Consensus 126 ~~la~~v~~~l~~~~~vll~nHG~ 149 (181)
T PRK08660 126 GELAENVARALSEHKGVVVRGHGT 149 (181)
T ss_pred HHHHHHHHHHHhhCCEEEEcCCCc
Confidence 467888888999889999999995
No 61
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=44.36 E-value=76 Score=24.46 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=30.2
Q ss_pred HHHHHHHHhcceEEEEcCCCCHHHHHHHHHhhhccC
Q 046735 81 NKVKNASEEWGFFQVISHGIPLSVLNDIKDGIRIPR 116 (117)
Q Consensus 81 ~~l~~A~~~~GFf~v~nHGI~~~li~~~~~~~~~~~ 116 (117)
-+-..++++.|-|.|.=-+++.+++.++-+...+|-
T Consensus 161 i~ra~a~~~AGA~~i~lE~v~~~~~~~i~~~v~iP~ 196 (254)
T cd06557 161 LEDALALEEAGAFALVLECVPAELAKEITEALSIPT 196 (254)
T ss_pred HHHHHHHHHCCCCEEEEcCCCHHHHHHHHHhCCCCE
Confidence 344567889999999999999999999988887773
No 62
>cd00398 Aldolase_II Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.
Probab=44.17 E-value=21 Score=26.11 Aligned_cols=38 Identities=13% Similarity=0.049 Sum_probs=25.7
Q ss_pred CcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCC
Q 046735 60 RVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGI 100 (117)
Q Consensus 60 ~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI 100 (117)
.||+++..... ..-.++.+.+..++.+.-.+.+-|||+
T Consensus 122 ~ip~~~~~~~~---~~~~~la~~~~~~l~~~~~vll~nHG~ 159 (209)
T cd00398 122 DIPCTPYMTPE---TGEDEIGTQRALGFPNSKAVLLRNHGL 159 (209)
T ss_pred CeeecCCcCCC---ccHHHHHHHHhcCCCcCCEEEEcCCCC
Confidence 57777765431 023455667777777888999999995
No 63
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=43.03 E-value=75 Score=24.26 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=35.9
Q ss_pred CCCCcCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHH
Q 046735 57 SQLRVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIKD 110 (117)
Q Consensus 57 ~~~~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~~ 110 (117)
.+..+--+||+... -.+..++|.+++.+.|+..+.|-.++.+...++.+
T Consensus 12 ~Gaev~g~dl~~~l-----~~~~~~~l~~~l~~~Gvlvfr~q~l~~~~~~~~~~ 60 (277)
T PRK09553 12 IGAQISGIDLTRPL-----SDNQFEQLYHALLRHQVLFFRDQPITPQQQRDLAA 60 (277)
T ss_pred ceeEEeCcccCCcC-----CHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH
Confidence 34556667886532 13467889999999999999999998776655543
No 64
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=42.24 E-value=27 Score=20.68 Aligned_cols=36 Identities=19% Similarity=0.444 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcc--eEEEEc------CCCCHHHHHHHHHhhh
Q 046735 78 EIINKVKNASEEWG--FFQVIS------HGIPLSVLNDIKDGIR 113 (117)
Q Consensus 78 ~~~~~l~~A~~~~G--Ff~v~n------HGI~~~li~~~~~~~~ 113 (117)
+....|.+.++++| ++.++. |||+.+-+..+++..+
T Consensus 24 ~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~ 67 (69)
T PF03460_consen 24 EQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELK 67 (69)
T ss_dssp HHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHH
Confidence 46777888888876 777765 7788888888876543
No 65
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=41.66 E-value=37 Score=26.78 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=23.2
Q ss_pred HHHHHhcceEEEEcCCCCHHHHHHHHHhhh
Q 046735 84 KNASEEWGFFQVISHGIPLSVLNDIKDGIR 113 (117)
Q Consensus 84 ~~A~~~~GFf~v~nHGI~~~li~~~~~~~~ 113 (117)
.+++++.|||.|-| +|..++..+.+...
T Consensus 18 l~~lED~Gy~cvDN--lP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 18 LRALEDLGYYCVDN--LPPSLLPQLIELLA 45 (284)
T ss_pred HHHHHhcCeeEEcC--CcHHHHHHHHHHHH
Confidence 46789999999998 79999998877654
No 66
>PRK09220 methylthioribulose-1-phosphate dehydratase; Provisional
Probab=41.44 E-value=33 Score=25.22 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhcc---eEEEEcCCC
Q 046735 76 RTEIINKVKNASEEWG---FFQVISHGI 100 (117)
Q Consensus 76 r~~~~~~l~~A~~~~G---Ff~v~nHGI 100 (117)
-.++++.+.+++++.. .+.|-|||+
T Consensus 144 ~~eLa~~v~~~l~~~~~~~avlL~nHGv 171 (204)
T PRK09220 144 IARLAARVAPYLDAQPLRYGYLIRGHGL 171 (204)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCce
Confidence 3678899999998864 899999995
No 67
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=41.02 E-value=15 Score=19.06 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=12.7
Q ss_pred EEEEcCCCCHHHHHHHH
Q 046735 93 FQVISHGIPLSVLNDIK 109 (117)
Q Consensus 93 f~v~nHGI~~~li~~~~ 109 (117)
.||..||++.+.+.+-.
T Consensus 9 rYV~eh~ls~ee~~~RL 25 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERL 25 (28)
T ss_pred hhHHhcCCCHHHHHHHH
Confidence 47888999998776543
No 68
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=40.93 E-value=28 Score=25.62 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHH-hcceEEEEcCCC
Q 046735 77 TEIINKVKNASE-EWGFFQVISHGI 100 (117)
Q Consensus 77 ~~~~~~l~~A~~-~~GFf~v~nHGI 100 (117)
.++++.+.++++ +...+.+-|||+
T Consensus 148 ~eLa~~v~~~l~~~~~avLl~nHG~ 172 (208)
T PRK06754 148 PTLAEEFAKHIQGDSGAVLIRNHGI 172 (208)
T ss_pred HHHHHHHHHHhccCCcEEEECCCce
Confidence 578888998887 888999999995
No 69
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=39.17 E-value=71 Score=25.06 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=29.8
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHhhhcc
Q 046735 63 TIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVIS-HGIPLSVLNDIKDGIRIP 115 (117)
Q Consensus 63 vIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~n-HGI~~~li~~~~~~~~~~ 115 (117)
+|||+.- ..+....+.|.++|--.|++ .|.+.+.++++.+.+++|
T Consensus 73 vIDFT~P--------~~~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l~~~~~i~ 118 (275)
T TIGR02130 73 CIDYTHP--------SAVNDNAAFYGKHGIPFVMGTTGGDREALAKLVADAKHP 118 (275)
T ss_pred EEECCCh--------HHHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHhcCCC
Confidence 4788632 35556667777778777777 577777777776655544
No 70
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=38.88 E-value=74 Score=23.10 Aligned_cols=33 Identities=15% Similarity=0.340 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHH
Q 046735 78 EIINKVKNASEEWGFFQVISHGIPLSVLNDIKD 110 (117)
Q Consensus 78 ~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~~ 110 (117)
+.++++.+.+.+.||+.+.|-.++.+.+.++..
T Consensus 24 ~~~~~~~~~l~~~G~vvlrg~~~~~~~~~~~~~ 56 (258)
T PF02668_consen 24 EELEELREALAEYGFVVLRGFPLDPEQFEALAS 56 (258)
T ss_dssp CHHHHHHHHHHHHSEEEEESCTSSHHHHHHHHH
T ss_pred HHHHHHHHHHhcccEEEEcCCCCCHHHHHHHHH
Confidence 478899999999999999999887777766554
No 71
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=38.13 E-value=61 Score=25.41 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHhhh
Q 046735 78 EIINKVKNASEEWGFFQVIS-HGIPLSVLNDIKDGIR 113 (117)
Q Consensus 78 ~~~~~l~~A~~~~GFf~v~n-HGI~~~li~~~~~~~~ 113 (117)
+...++.+-|.+.|.-.|++ .|++++.++.+.++++
T Consensus 80 ~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~ 116 (266)
T COG0289 80 EATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAE 116 (266)
T ss_pred hhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHh
Confidence 35566677778888888887 5888888888877665
No 72
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=37.21 E-value=63 Score=20.18 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHH
Q 046735 77 TEIINKVKNASEEWGFFQVISHGIPLSVLNDIK 109 (117)
Q Consensus 77 ~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~ 109 (117)
..++..|..+++.+||..=.-||.-.+-..+.+
T Consensus 15 ~~~~~evq~~L~~lGyy~g~~~g~~d~a~~~Al 47 (74)
T PF08823_consen 15 GDVAREVQEALKRLGYYKGEADGVWDEATEDAL 47 (74)
T ss_pred HHHHHHHHHHHHHcCCccCCCCCcccHHHHHHH
Confidence 457899999999999999888986554444433
No 73
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=36.84 E-value=44 Score=24.23 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=25.2
Q ss_pred CcCccCCCCCCCCCchHHHHHHHHHHHHH---hcceEEEEcCCC
Q 046735 60 RVPTIDPEGIHKDPNTRTEIINKVKNASE---EWGFFQVISHGI 100 (117)
Q Consensus 60 ~iPvIDls~~~~~~~~r~~~~~~l~~A~~---~~GFf~v~nHGI 100 (117)
.||+++. .. .-.++++.+.++++ +...+.+-|||+
T Consensus 126 ~vp~~~~-~~-----gs~ela~~~~~~l~~~~~~~avll~nHGv 163 (193)
T TIGR03328 126 TIPIFEN-TQ-----DIARLADSVAPYLEAYPDVPGVLIRGHGL 163 (193)
T ss_pred EEeeecC-CC-----ChHHHHHHHHHHHhcCCCCCEEEEcCCcc
Confidence 4777763 11 22567888888886 478999999996
No 74
>PRK06661 hypothetical protein; Provisional
Probab=36.78 E-value=35 Score=25.63 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCC
Q 046735 77 TEIINKVKNASEEWGFFQVISHGI 100 (117)
Q Consensus 77 ~~~~~~l~~A~~~~GFf~v~nHGI 100 (117)
.+..+.+.+++.+...+.+-|||+
T Consensus 137 ~~~~~~~a~~l~~~~avll~nHG~ 160 (231)
T PRK06661 137 DKQSSRLVNDLKQNYVMLLRNHGA 160 (231)
T ss_pred hhHHHHHHHHhCCCCEEEECCCCC
Confidence 456778888899999999999995
No 75
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=36.57 E-value=22 Score=20.14 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=19.2
Q ss_pred CccCCCCCCC-CCchHHHHHHHHHHHHHhc
Q 046735 62 PTIDPEGIHK-DPNTRTEIINKVKNASEEW 90 (117)
Q Consensus 62 PvIDls~~~~-~~~~r~~~~~~l~~A~~~~ 90 (117)
|+|.+.-+.+ +++++.++++.|.+++.+.
T Consensus 1 P~i~i~~~~grt~eqk~~l~~~i~~~l~~~ 30 (58)
T cd00491 1 PFVQIYILEGRTDEQKRELIERVTEAVSEI 30 (58)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 4555543332 5678888999998887653
No 76
>PTZ00135 60S acidic ribosomal protein P0; Provisional
Probab=34.83 E-value=1.2e+02 Score=24.16 Aligned_cols=40 Identities=15% Similarity=0.317 Sum_probs=31.7
Q ss_pred chHHHHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHhhh
Q 046735 74 NTRTEIINKVKNASEEWGFFQVIS-HGIPLSVLNDIKDGIR 113 (117)
Q Consensus 74 ~~r~~~~~~l~~A~~~~GFf~v~n-HGI~~~li~~~~~~~~ 113 (117)
+.+.+.+++|.+.+.++-.++|++ +|++...++++.+..|
T Consensus 8 e~K~~~v~~l~e~l~~y~~v~vv~~~nv~s~ql~~iR~~LR 48 (310)
T PTZ00135 8 AKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLR 48 (310)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHh
Confidence 346778899999999988777776 6899988888887654
No 77
>PRK06208 hypothetical protein; Provisional
Probab=33.87 E-value=44 Score=26.01 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCC
Q 046735 77 TEIINKVKNASEEWGFFQVISHGI 100 (117)
Q Consensus 77 ~~~~~~l~~A~~~~GFf~v~nHGI 100 (117)
.++.+.+.+++++...+.+.|||+
T Consensus 177 ~ela~~va~~l~~~~avLL~NHGv 200 (274)
T PRK06208 177 TSEGRRIAAALGTHKAVILQNHGL 200 (274)
T ss_pred hHHHHHHHHHhccCCEEEECCCCc
Confidence 467888888888999999999995
No 78
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=33.54 E-value=82 Score=21.02 Aligned_cols=36 Identities=11% Similarity=0.193 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHhhh
Q 046735 78 EIINKVKNASEEWGFFQVIS-HGIPLSVLNDIKDGIR 113 (117)
Q Consensus 78 ~~~~~l~~A~~~~GFf~v~n-HGI~~~li~~~~~~~~ 113 (117)
+.+....+.|.++|-=.|++ .|.+.+.++.+.+.++
T Consensus 78 ~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 78 DAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp HHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 45666667777779999996 6999999999888654
No 79
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=33.30 E-value=28 Score=20.33 Aligned_cols=28 Identities=7% Similarity=0.195 Sum_probs=19.1
Q ss_pred CccCCCCCCC-CCchHHHHHHHHHHHHHh
Q 046735 62 PTIDPEGIHK-DPNTRTEIINKVKNASEE 89 (117)
Q Consensus 62 PvIDls~~~~-~~~~r~~~~~~l~~A~~~ 89 (117)
|+|.+.-+.+ +++++.++++.|.+++.+
T Consensus 2 P~i~i~~~~Grs~EqK~~L~~~it~a~~~ 30 (60)
T PRK02289 2 PFVRIDLFEGRSQEQKNALAREVTEVVSR 30 (60)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 5555544332 567889999999988764
No 80
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=32.99 E-value=73 Score=24.84 Aligned_cols=34 Identities=26% Similarity=0.476 Sum_probs=28.3
Q ss_pred HHHHHHHhcceEEEEcCCCCHHHHHHHHHhhhcc
Q 046735 82 KVKNASEEWGFFQVISHGIPLSVLNDIKDGIRIP 115 (117)
Q Consensus 82 ~l~~A~~~~GFf~v~nHGI~~~li~~~~~~~~~~ 115 (117)
+-..++++.|.|.|+=-.||.++-..+-+...+|
T Consensus 166 ~~A~ale~AGaf~ivlE~vp~~la~~It~~l~IP 199 (261)
T PF02548_consen 166 EDAKALEEAGAFAIVLECVPAELAKAITEALSIP 199 (261)
T ss_dssp HHHHHHHHHT-SEEEEESBBHHHHHHHHHHSSS-
T ss_pred HHHHHHHHcCccEEeeecCHHHHHHHHHHhCCCC
Confidence 3456788999999999999999999999998887
No 81
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=32.99 E-value=37 Score=23.56 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=19.6
Q ss_pred CCchHHHHHHHHHHHHHhcceEEEEc
Q 046735 72 DPNTRTEIINKVKNASEEWGFFQVIS 97 (117)
Q Consensus 72 ~~~~r~~~~~~l~~A~~~~GFf~v~n 97 (117)
+.+.|....++|...|++.|| .+.+
T Consensus 70 ~~~~r~~~y~kI~~~~~~~gf-~v~D 94 (130)
T PF04914_consen 70 SKEMRQEYYKKIKYQLKSQGF-NVAD 94 (130)
T ss_dssp -HHHHHHHHHHHHHHHHTTT---EEE
T ss_pred CHHHHHHHHHHHHHHHHHCCC-EEEe
Confidence 356789999999999999999 8775
No 82
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=32.86 E-value=36 Score=23.71 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=17.1
Q ss_pred EcCCCCHHHHHHHHHhhhc
Q 046735 96 ISHGIPLSVLNDIKDGIRI 114 (117)
Q Consensus 96 ~nHGI~~~li~~~~~~~~~ 114 (117)
.+|||..+.++.+++.++.
T Consensus 114 ~~h~it~e~id~LY~~akf 132 (133)
T PF09440_consen 114 ENHGITPEMIDALYKYAKF 132 (133)
T ss_pred HhcCCCHHHHHHHHHHhCc
Confidence 7999999999999998863
No 83
>PRK06486 hypothetical protein; Provisional
Probab=32.77 E-value=46 Score=25.59 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCC
Q 046735 77 TEIINKVKNASEEWGFFQVISHGI 100 (117)
Q Consensus 77 ~~~~~~l~~A~~~~GFf~v~nHGI 100 (117)
.+..+.+.+++.+...+.+-|||+
T Consensus 162 ~ela~~va~al~~~~avLL~nHG~ 185 (262)
T PRK06486 162 AAEGDRIARAMGDADIVFLKNHGV 185 (262)
T ss_pred hhHHHHHHHHhCcCCEEEECCCCC
Confidence 467888889998999999999995
No 84
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=32.65 E-value=28 Score=20.08 Aligned_cols=28 Identities=14% Similarity=0.219 Sum_probs=19.0
Q ss_pred CccCCCCCCC-CCchHHHHHHHHHHHHHh
Q 046735 62 PTIDPEGIHK-DPNTRTEIINKVKNASEE 89 (117)
Q Consensus 62 PvIDls~~~~-~~~~r~~~~~~l~~A~~~ 89 (117)
|+|.+..+.+ +.+++.++++.|.+++.+
T Consensus 2 P~i~i~~~~Grs~eqk~~l~~~it~~l~~ 30 (61)
T PRK02220 2 PYVHIKLIEGRTEEQLKALVKDVTAAVSK 30 (61)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 5555543332 567888999999988764
No 85
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.40 E-value=81 Score=23.35 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcceEEEE----------------------cCCCCHHHHHHHH
Q 046735 80 INKVKNASEEWGFFQVI----------------------SHGIPLSVLNDIK 109 (117)
Q Consensus 80 ~~~l~~A~~~~GFf~v~----------------------nHGI~~~li~~~~ 109 (117)
..++-+.|+..||..+. +|+|+++.+.+=+
T Consensus 83 ~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY 134 (187)
T COG4185 83 ILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRY 134 (187)
T ss_pred HHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 45667789999997655 5888888776543
No 86
>PRK08193 araD L-ribulose-5-phosphate 4-epimerase; Reviewed
Probab=31.27 E-value=91 Score=23.33 Aligned_cols=24 Identities=25% Similarity=0.037 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhc-------ceEEEEcCCC
Q 046735 77 TEIINKVKNASEEW-------GFFQVISHGI 100 (117)
Q Consensus 77 ~~~~~~l~~A~~~~-------GFf~v~nHGI 100 (117)
.+..+.+.+++++. ..+.+.|||+
T Consensus 142 ~~~~~~ia~~l~~~~~~~~~~~avLl~nHG~ 172 (231)
T PRK08193 142 WETGKVIVETFEKRGIDPAAVPGVLVHSHGP 172 (231)
T ss_pred hhHHHHHHHHHhhccCCcccCCEEEEcCCCc
Confidence 35677788888754 4799999995
No 87
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=30.40 E-value=57 Score=20.52 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHhcceEEEEcC
Q 046735 75 TRTEIINKVKNASEEWGFFQVISH 98 (117)
Q Consensus 75 ~r~~~~~~l~~A~~~~GFf~v~nH 98 (117)
.-.++++.+.++|+++|...+-+|
T Consensus 72 ~l~~~~~Gi~~~~~~~g~~ivGG~ 95 (96)
T PF00586_consen 72 ELKEIVKGIAEACREFGIPIVGGD 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHT-EEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCcEeCcC
Confidence 456788999999999999887765
No 88
>cd04367 IlGF_insulin_like IlGF_like family, insulin_like subgroup, specific to vertebrates. Members include a number of peptides including insulin and insulin-like growth factors I and II, which play a variety of roles in controlling processes such as metabolism, growth and differentiation, and reproduction. On a cellular level they affect cell cycle, apoptosis, cell migration, and differentiation. With the exception of the insulin-like growth factors, the active forms of these peptide hormones are composed of two chains (A and B) linked by two disulfide bonds; the arrangement of four cysteines is conserved in the "A" chain: Cys1 is linked by a disulfide bond to Cys3, Cys2 and Cys4 are linked by interchain disulfide bonds to cysteines in the "B" chain. This alignment contains both chains, plus the intervening linker region, arranged as found in the propeptide form. Propeptides are cleaved to yield two separate chains linked covalently by the two disulfide bonds.
Probab=29.68 E-value=39 Score=21.59 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCC
Q 046735 77 TEIINKVKNASEEWGFFQVISHGI 100 (117)
Q Consensus 77 ~~~~~~l~~A~~~~GFf~v~nHGI 100 (117)
.++++.|...|.+.|||+--..+.
T Consensus 8 s~LvdaL~~VCG~RGF~~~pk~~r 31 (79)
T cd04367 8 SHLVDALYLVCGDRGFFYTPKRRR 31 (79)
T ss_pred HHHHHHHHHHHccCCcccCCcccc
Confidence 468899999999999999776553
No 89
>PRK07490 hypothetical protein; Provisional
Probab=29.67 E-value=56 Score=24.76 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhcceEEEEcCCC
Q 046735 76 RTEIINKVKNASEEWGFFQVISHGI 100 (117)
Q Consensus 76 r~~~~~~l~~A~~~~GFf~v~nHGI 100 (117)
-.+..+.+.+++.+.-.+.+-|||+
T Consensus 145 ~~ela~~v~~~l~~~~avlL~nHG~ 169 (245)
T PRK07490 145 LEEEGERLAGLLGDKRRLLMGNHGV 169 (245)
T ss_pred cHHHHHHHHHHhCcCCEEEECCCCc
Confidence 3467888899999889999999995
No 90
>COG5488 Integral membrane protein [Function unknown]
Probab=28.48 E-value=52 Score=23.84 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=21.1
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHHHHh
Q 046735 63 TIDPEGIHKDPNTRTEIINKVKNASEE 89 (117)
Q Consensus 63 vIDls~~~~~~~~r~~~~~~l~~A~~~ 89 (117)
++|+..+. +|.+|+.++.++.+|+.+
T Consensus 136 ~~~ig~fL-~Pd~Re~fa~af~~aLat 161 (164)
T COG5488 136 VVDIGRFL-NPDDRESFAAAFSRALAT 161 (164)
T ss_pred eeehhccc-ChHHHHHHHHHHHHHHHh
Confidence 46777766 688999999999998864
No 91
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=27.91 E-value=1.6e+02 Score=23.67 Aligned_cols=39 Identities=8% Similarity=0.303 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHhhh
Q 046735 75 TRTEIINKVKNASEEWGFFQVIS-HGIPLSVLNDIKDGIR 113 (117)
Q Consensus 75 ~r~~~~~~l~~A~~~~GFf~v~n-HGI~~~li~~~~~~~~ 113 (117)
.+.+.+++|++.+.++=+++|++ .+++...++++.+..|
T Consensus 7 ~K~~~v~~l~~~l~~y~~v~Iv~~~nv~s~qlq~IR~~lr 46 (323)
T PTZ00240 7 AKREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRALR 46 (323)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEecCCCcHHHHHHHHHhh
Confidence 36678899999999999888888 6799998888887654
No 92
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=27.86 E-value=38 Score=19.57 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=19.1
Q ss_pred CccCCCCC-CC-CCchHHHHHHHHHHHHHhc
Q 046735 62 PTIDPEGI-HK-DPNTRTEIINKVKNASEEW 90 (117)
Q Consensus 62 PvIDls~~-~~-~~~~r~~~~~~l~~A~~~~ 90 (117)
|+|.+.-+ .+ +++++.++++.|.+++.+.
T Consensus 1 P~i~i~i~~~grt~eqK~~l~~~it~~l~~~ 31 (63)
T TIGR00013 1 PFVNIYILKEGRTDEQKRQLIEGVTEAMAET 31 (63)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 55555544 22 5678888888888877653
No 93
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=26.46 E-value=64 Score=23.69 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhcceEEEEcCCCCHHH
Q 046735 76 RTEIINKVKNASEEWGFFQVISHGIPLSV 104 (117)
Q Consensus 76 r~~~~~~l~~A~~~~GFf~v~nHGI~~~l 104 (117)
...+.+.|.+|++.-||-..+-|++.+.+
T Consensus 18 D~~f~~~LaRa~e~RGf~v~~a~~~~eal 46 (182)
T COG4567 18 DTPFLRTLARAMERRGFAVVTAESVEEAL 46 (182)
T ss_pred ChHHHHHHHHHHhccCceeEeeccHHHHH
Confidence 35689999999999999999999886543
No 94
>PLN02775 Probable dihydrodipicolinate reductase
Probab=26.43 E-value=1.3e+02 Score=23.73 Aligned_cols=44 Identities=14% Similarity=0.009 Sum_probs=27.4
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHhhhc
Q 046735 63 TIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVIS-HGIPLSVLNDIKDGIRI 114 (117)
Q Consensus 63 vIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~n-HGI~~~li~~~~~~~~~ 114 (117)
+|||+.- ..+.+..+.|.+.|.=.|++ .|.+.+.++++.+..++
T Consensus 84 vIDFT~P--------~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~i 128 (286)
T PLN02775 84 VVDYTLP--------DAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESGV 128 (286)
T ss_pred EEECCCh--------HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCCc
Confidence 5777632 35566667777777777776 47777766655543333
No 95
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=25.74 E-value=27 Score=20.16 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=17.6
Q ss_pred CccCCCCCCC-CCchHHHHHHHHHHHHHh
Q 046735 62 PTIDPEGIHK-DPNTRTEIINKVKNASEE 89 (117)
Q Consensus 62 PvIDls~~~~-~~~~r~~~~~~l~~A~~~ 89 (117)
|+|.+..+.+ +.+.+.+++++|.+++.+
T Consensus 1 P~I~i~~~~g~~~e~K~~l~~~it~~~~~ 29 (60)
T PF01361_consen 1 PFITIKIPEGRTAEQKRELAEAITDAVVE 29 (60)
T ss_dssp -EEEEEEESTS-HHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 4555544432 456788889999888765
No 96
>PF13992 YecR: YecR-like lipoprotein
Probab=25.16 E-value=80 Score=19.88 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcceEEEEcCCCC
Q 046735 79 IINKVKNASEEWGFFQVISHGIP 101 (117)
Q Consensus 79 ~~~~l~~A~~~~GFf~v~nHGI~ 101 (117)
....-.+.|+.|||---.-.|-+
T Consensus 29 ~~~~A~~rCq~wGY~~Ae~fG~~ 51 (74)
T PF13992_consen 29 AQGLATKRCQQWGYKGAEPFGGP 51 (74)
T ss_pred HHHHHHHHHHHhCcCcCEecCCC
Confidence 33344578999999766655544
No 97
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.05 E-value=2.5e+02 Score=21.90 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=36.1
Q ss_pred CCCcCccCCCCCCCCCchHHHHHHHHHHH---HHhcceEEEEcCCCCHHHHHHHHHh
Q 046735 58 QLRVPTIDPEGIHKDPNTRTEIINKVKNA---SEEWGFFQVISHGIPLSVLNDIKDG 111 (117)
Q Consensus 58 ~~~iPvIDls~~~~~~~~r~~~~~~l~~A---~~~~GFf~v~nHGI~~~li~~~~~~ 111 (117)
...+|.++=.-|..+...+..+.++|..+ .+..|+...++|-- .+.+.-+.++
T Consensus 171 ~~gVp~~~rdvfLD~e~~~~~V~kql~~~~~~Ark~G~ai~IGh~~-~~Tv~vl~~~ 226 (250)
T COG2861 171 EIGVPVIKRDVFLDDEDTEAAVLKQLDAAEKLARKNGSAIGIGHPH-KNTVAVLQQW 226 (250)
T ss_pred hcCCceeeeeeeecCcCCHHHHHHHHHHHHHHHHhcCceEEecCCc-hhHHHHHHHH
Confidence 44688888777664445567777666655 77999999999974 4444444443
No 98
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=24.82 E-value=48 Score=19.08 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=19.7
Q ss_pred CccCCCCCCC-CCchHHHHHHHHHHHHHh-cc
Q 046735 62 PTIDPEGIHK-DPNTRTEIINKVKNASEE-WG 91 (117)
Q Consensus 62 PvIDls~~~~-~~~~r~~~~~~l~~A~~~-~G 91 (117)
|+|.+..+.+ +.+.+.++++.|.+++.+ .|
T Consensus 2 P~i~I~~~~grs~eqk~~l~~~it~~l~~~~~ 33 (62)
T PRK00745 2 PTFHIELFEGRTVEQKRKLVEEITRVTVETLG 33 (62)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 5555544432 567888899999887554 44
No 99
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=24.47 E-value=1.3e+02 Score=22.90 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=24.7
Q ss_pred HHHHHHHHhcceEEEEcCCCCHHHHHHHHHhhh
Q 046735 81 NKVKNASEEWGFFQVISHGIPLSVLNDIKDGIR 113 (117)
Q Consensus 81 ~~l~~A~~~~GFf~v~nHGI~~~li~~~~~~~~ 113 (117)
++-.+.+++.||+.|.|- ++.+.++++.+...
T Consensus 19 ~eqi~~f~~dGyvvl~~v-ls~eev~~lr~~i~ 50 (277)
T TIGR02408 19 AKQLQSYERDGFLLLENL-FSDDEVAALLAEVE 50 (277)
T ss_pred HHHHHHHHHCCEEECccc-CCHHHHHHHHHHHH
Confidence 344567999999988876 88888888887553
No 100
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=23.95 E-value=1.9e+02 Score=23.04 Aligned_cols=47 Identities=9% Similarity=0.133 Sum_probs=33.9
Q ss_pred cCccCCCCCCCCCchHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHH
Q 046735 61 VPTIDPEGIHKDPNTRTEIINKVKNASEEWGFFQVISHGIPLSVLNDIKD 110 (117)
Q Consensus 61 iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~~ 110 (117)
+|.+|+..+..+ -.+.+.++..++.++|+..+.|-.++.+.+.++-+
T Consensus 101 ~~~~~~~~~~~~---~d~~l~~~l~~l~~~G~v~~~g~~~~~~~~~~~a~ 147 (362)
T TIGR02410 101 DPSVHFKTTYDH---TDSTLKSFSKNIYKYGFTFVDNVPVTPEATEKLCE 147 (362)
T ss_pred CCceeHHHHhcc---CHHHHHHHHHHHHhhCEEEEcCCCCCHHHHHHHHH
Confidence 466666544321 13567889999999999999999998877666544
No 101
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=23.60 E-value=1.3e+02 Score=20.18 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=27.2
Q ss_pred HHHHHHHHh---cceEEEEcCCCCHHHHHHHHHhhhc
Q 046735 81 NKVKNASEE---WGFFQVISHGIPLSVLNDIKDGIRI 114 (117)
Q Consensus 81 ~~l~~A~~~---~GFf~v~nHGI~~~li~~~~~~~~~ 114 (117)
.+|+.+|-. ..-+.|++.|....+++++....+.
T Consensus 79 ~eLG~a~Gk~~~~svvaI~d~g~a~~~~~~~~~~i~~ 115 (117)
T TIGR03677 79 EDLGAAAGLEVGAASAAIVDEGKAEELLKEIIEKVEA 115 (117)
T ss_pred HHHHHHhCCCCCeEEEEEEchhhhHHHHHHHHHHHHh
Confidence 566777763 6788999999999999998877654
No 102
>cd00580 CHMI 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate. This is one step in the homoprotocatechuate pathway, one of the microbial meta-fission pathways that degrade aromatic carbon sources to citric acid cycle intermediates. Despite the structural similarity of CHMI with 4-oxalocrotonate tautomerase (4-OT) and macrophage migration inhibitory factor (MIF), there is no significant sequence similarity among these protein families, and therefore, they are not combined in one hierarchy.
Probab=23.48 E-value=82 Score=20.73 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=21.2
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHHHHhcceE
Q 046735 63 TIDPEGIHKDPNTRTEIINKVKNASEEWGFF 93 (117)
Q Consensus 63 vIDls~~~~~~~~r~~~~~~l~~A~~~~GFf 93 (117)
+|+++.-..+..++.++++.|.+++.+.|.|
T Consensus 4 ~Ieys~~l~~~~~~~~l~~~v~~al~~~~~~ 34 (113)
T cd00580 4 IIEYSANLEGRADIPELLRALHDALVASGLF 34 (113)
T ss_pred EEEeCCCccccCCHHHHHHHHHHHHHhcCCC
Confidence 4566543212356888999999998888744
No 103
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=23.29 E-value=1e+02 Score=24.23 Aligned_cols=46 Identities=15% Similarity=0.308 Sum_probs=31.7
Q ss_pred CCCCcCccCCCCCCC-CCchHHHHHHHHHHHHHhcceEEEEcCC-CCHHH
Q 046735 57 SQLRVPTIDPEGIHK-DPNTRTEIINKVKNASEEWGFFQVISHG-IPLSV 104 (117)
Q Consensus 57 ~~~~iPvIDls~~~~-~~~~r~~~~~~l~~A~~~~GFf~v~nHG-I~~~l 104 (117)
+...||||-+|-... ++....++.++|+.+-++ | +.++.-| +...+
T Consensus 129 PdadipVV~iSi~~~~~~~~h~~lG~al~~lree-~-vlilaSGs~~H~l 176 (268)
T COG3384 129 PDADIPVVQISIDCTLSPADHYELGRALRKLREE-G-VLILASGSLVHNL 176 (268)
T ss_pred CccCCcEEEEecCCCCCHHHHHHHHHHHHHHHhC-C-EEEEecCcceeeh
Confidence 456799999987653 456777888899988888 6 4454444 44433
No 104
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=22.79 E-value=95 Score=21.61 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=28.3
Q ss_pred CcCccCCCCCCCCCchHHHHHHHHHHHHHhcceE
Q 046735 60 RVPTIDPEGIHKDPNTRTEIINKVKNASEEWGFF 93 (117)
Q Consensus 60 ~iPvIDls~~~~~~~~r~~~~~~l~~A~~~~GFf 93 (117)
.|=+.|++.+..++....+++++|++-.+++|-+
T Consensus 65 NIvIaDit~l~~d~~~~~~V~e~lr~~a~~~ggd 98 (124)
T COG2450 65 NIVIADITPLERDDDLFERVIEELRDTAEEVGGD 98 (124)
T ss_pred CEEEEEcCCcccChhHHHHHHHHHHHHHHHhCch
Confidence 6888999988766777888999999988888765
No 105
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=22.63 E-value=1.3e+02 Score=20.11 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=30.1
Q ss_pred CcCccCCCCCCC-CCchHHHHHHHHHHHHHhcceEEEEcCCCCHHHH
Q 046735 60 RVPTIDPEGIHK-DPNTRTEIINKVKNASEEWGFFQVISHGIPLSVL 105 (117)
Q Consensus 60 ~iPvIDls~~~~-~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~~~li 105 (117)
.+--||++.+.. |+ .--.+.-.+.+-|+..|- .+.=+|+|+.+.
T Consensus 40 ~~~~idLs~v~rvDS-aglALL~~~~~~~k~~g~-~~~L~~~p~~L~ 84 (99)
T COG3113 40 DTVRIDLSGVSRVDS-AGLALLLHLIRLAKKQGN-AVTLTGVPEQLR 84 (99)
T ss_pred CeEEEehhhcceech-HHHHHHHHHHHHHHHcCC-eeEEecCcHHHH
Confidence 355678887752 22 234456677788888888 788889997754
No 106
>PLN02433 uroporphyrinogen decarboxylase
Probab=22.36 E-value=1.8e+02 Score=22.94 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=26.2
Q ss_pred CCCchHHHHHHHHHHHHHhcceEEEEcCCCC----HHHHHHHHHhhh
Q 046735 71 KDPNTRTEIINKVKNASEEWGFFQVISHGIP----LSVLNDIKDGIR 113 (117)
Q Consensus 71 ~~~~~r~~~~~~l~~A~~~~GFf~v~nHGI~----~~li~~~~~~~~ 113 (117)
++++.-.+.++++.+.+..-||+.-.+|||+ .+-++.+.+.++
T Consensus 289 gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~~~tp~eNi~a~v~av~ 335 (345)
T PLN02433 289 GSKEAIEKEVRDVVKKAGPQGHILNLGHGVLVGTPEENVAHFFDVAR 335 (345)
T ss_pred CCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCCHHHHHHHHHHHH
Confidence 3444444555555555555688888999986 455555555443
No 107
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=22.09 E-value=1.5e+02 Score=20.46 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHHHHhc-ceEEEEcCCCCHHHHHHHHH
Q 046735 74 NTRTEIINKVKNASEEW-GFFQVISHGIPLSVLNDIKD 110 (117)
Q Consensus 74 ~~r~~~~~~l~~A~~~~-GFf~v~nHGI~~~li~~~~~ 110 (117)
.-|..+++.|.+++.+- |.+.+-|.+.....+.++-+
T Consensus 55 DPr~~~~~~L~~~i~~~~g~ivvyN~sfE~~rL~ela~ 92 (130)
T PF11074_consen 55 DPRRELIEALIKAIGSIYGSIVVYNKSFEKTRLKELAE 92 (130)
T ss_pred CchHHHHHHHHHHhhhhcCeEEEechHHHHHHHHHHHH
Confidence 34888999999999999 99999999877766666543
No 108
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=21.87 E-value=2.2e+02 Score=17.92 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcceEEEEcCCCCHHHHHHH
Q 046735 78 EIINKVKNASEEWGFFQVISHGIPLSVLNDI 108 (117)
Q Consensus 78 ~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~ 108 (117)
..+..+.+.|+..| ..+.-.|+.+...+-+
T Consensus 60 ~~l~~~~~~~~~~g-~~l~l~g~~~~v~~~l 89 (109)
T cd07041 60 RHLLRLARALRLLG-ARTILTGIRPEVAQTL 89 (109)
T ss_pred HHHHHHHHHHHHcC-CeEEEEeCCHHHHHHH
Confidence 45667777777776 4555566777665543
No 109
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=21.53 E-value=1.7e+02 Score=16.41 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHhh
Q 046735 79 IINKVKNASEEWGFFQVISHGIPLSVLNDIKDGI 112 (117)
Q Consensus 79 ~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~~~~ 112 (117)
.++.+.+.+++.||+ |++++++.+.+.+
T Consensus 20 ~~~~~l~~l~~~g~~------is~~l~~~~L~~~ 47 (48)
T PF11848_consen 20 EVKPLLDRLQQAGFR------ISPKLIEEILRRA 47 (48)
T ss_pred hHHHHHHHHHHcCcc------cCHHHHHHHHHHc
Confidence 345556667888887 7888888887653
No 110
>PF13309 HTH_22: HTH domain
Probab=20.78 E-value=63 Score=19.37 Aligned_cols=18 Identities=17% Similarity=0.184 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcceEEEEc
Q 046735 80 INKVKNASEEWGFFQVIS 97 (117)
Q Consensus 80 ~~~l~~A~~~~GFf~v~n 97 (117)
-.++.+.+.+-|+|.+.+
T Consensus 26 k~~iV~~L~~~G~F~lKg 43 (64)
T PF13309_consen 26 KKEIVRQLYEKGIFLLKG 43 (64)
T ss_pred HHHHHHHHHHCCCcccCc
Confidence 345567788899999987
No 111
>cd04368 IlGF IlGF, insulin_like growth factors; specific to vertebrates. Members include a number of peptides including insulin-like growth factors I and II, which play a variety of roles in controlling processes such as growth, differentiation, and reproduction. On a cellular level they affect cell cycle, apoptosis, cell migration, proliferation, and differentiation. Typically, the active forms of these peptide hormones are single chains cross-linked by three disulfide bonds.
Probab=20.54 E-value=77 Score=19.66 Aligned_cols=20 Identities=15% Similarity=0.408 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhcceEEEE
Q 046735 77 TEIINKVKNASEEWGFFQVI 96 (117)
Q Consensus 77 ~~~~~~l~~A~~~~GFf~v~ 96 (117)
..+++.|...|.+.|||+.-
T Consensus 8 ~~Lvd~L~~vCg~RGf~~~~ 27 (67)
T cd04368 8 GELVDTLQFVCGDRGFYFSK 27 (67)
T ss_pred HHHHHHHHHHhCCCCcccCC
Confidence 46889999999999998765
No 112
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=20.29 E-value=62 Score=18.88 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=18.6
Q ss_pred CccCCCCCCC-CCchHHHHHHHHHHHHHh
Q 046735 62 PTIDPEGIHK-DPNTRTEIINKVKNASEE 89 (117)
Q Consensus 62 PvIDls~~~~-~~~~r~~~~~~l~~A~~~ 89 (117)
|+|.+....+ +.+.+.++++.|.+++.+
T Consensus 2 P~v~i~l~~grt~eqk~~l~~~it~~l~~ 30 (64)
T PRK01964 2 PIVQIQLLEGRPEEKIKNLIREVTEAISA 30 (64)
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 5555543332 567888899999988765
No 113
>smart00830 CM_2 Chorismate mutase type II. Chorismate mutase, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine PUBMED:9642265, PUBMED:9497350.
Probab=20.28 E-value=2.1e+02 Score=17.10 Aligned_cols=28 Identities=14% Similarity=0.376 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHh
Q 046735 76 RTEIINKVKNASEEWGFFQVISHGIPLSVLNDIKDG 111 (117)
Q Consensus 76 r~~~~~~l~~A~~~~GFf~v~nHGI~~~li~~~~~~ 111 (117)
...+++.+...+. ++|++++.+..+|..
T Consensus 42 e~~vl~~~~~~a~--------~~~l~~~~~~~if~~ 69 (79)
T smart00830 42 EAEVLERLRALAE--------GPGLDPELVERIFRE 69 (79)
T ss_pred HHHHHHHHHHHcc--------cCCcCHHHHHHHHHH
Confidence 3445555554444 778899888888764
No 114
>PRK07044 aldolase II superfamily protein; Provisional
Probab=20.18 E-value=1.1e+02 Score=23.24 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcceEEEEcCCC
Q 046735 78 EIINKVKNASEEWGFFQVISHGI 100 (117)
Q Consensus 78 ~~~~~l~~A~~~~GFf~v~nHGI 100 (117)
+..+.+.+++.+..-+.+-|||+
T Consensus 152 e~~~~va~~l~~~~avLL~nHGv 174 (252)
T PRK07044 152 DEGERLVADLGDKPAMLLRNHGL 174 (252)
T ss_pred HHHHHHHHHhccCCEEEECCCCc
Confidence 45677778888889999999995
Done!