BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046740
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 140 bits (353), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 93/136 (68%)
Query: 35 IVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLR 94
I VCYGM GNNLP +V++L NNI RMR+YDPN+ AL+ALR SNI+V+L +P +D++
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 95 RIASNQAESNTWVXXXXXXXXXXXXXXYIAVGNEAKPGDDFAWYLVPAMRNIQNAINGAN 154
+ASN + + W+ YIAVGNE PG D A Y++PAMRNI NA++ A
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSDLAQYILPAMRNIYNALSSAG 120
Query: 155 LGSQIKVSTAIESRAL 170
L +QIKVSTA+++ L
Sbjct: 121 LQNQIKVSTAVDTGVL 136
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/134 (52%), Positives = 91/134 (67%), Gaps = 5/134 (3%)
Query: 37 VCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRI 96
VCYGM GNNLP +VIAL ++NI RMRIYDPN+ LEALRGSNIE++LG+PN+DL+ +
Sbjct: 4 VCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQSL 63
Query: 97 ASNQAESNTWVXXXXXXXXXXXXXXYIAVGNEAKPGD-DFAW---YLVPAMRNIQNAING 152
+N + + +WV YIAVGNE P + AW +++PAMRNI +AI
Sbjct: 64 -TNPSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAIRS 122
Query: 153 ANLGSQIKVSTAIE 166
A L QIKVSTAI+
Sbjct: 123 AGLQDQIKVSTAID 136
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 84/139 (60%), Gaps = 4/139 (2%)
Query: 35 IVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLR 94
I VCYG NNLPS DVI L NNI++MRIY P+ AL+GSNIE++L +PN DL
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 95 RIASNQAESNTWVXXXXXXXXXXXXXXYIAVGNEAKPGDD---FAWYLVPAMRNIQNAIN 151
+A N + +N WV YIAVGNE PG + +A ++ PAM NI NA++
Sbjct: 63 ALA-NPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 152 GANLGSQIKVSTAIESRAL 170
A L +QIKVST+ S L
Sbjct: 122 SAGLQNQIKVSTSTYSGLL 140
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 84/139 (60%), Gaps = 4/139 (2%)
Query: 35 IVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLR 94
I VCYG NNLPS DVI L NNI++MRIY P+ AL+GSNIE++L +PN DL
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 95 RIASNQAESNTWVXXXXXXXXXXXXXXYIAVGNEAKPGDD---FAWYLVPAMRNIQNAIN 151
+A N + +N WV YIAVGNE PG + +A ++ PAM NI NA++
Sbjct: 63 ALA-NPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 152 GANLGSQIKVSTAIESRAL 170
A L +QIKVST+ S L
Sbjct: 122 SAGLQNQIKVSTSTYSGLL 140
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 78/136 (57%), Gaps = 4/136 (2%)
Query: 35 IVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLR 94
I VCYGM NNLP+ V+++ N I+ MR+Y PN+ AL+A+ G+ I V++G PN+ L
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 95 RIASNQAESNTWVXXXXXXXXXXXXXXYIAVGNEAKPGDDFAWYLVPAMRNIQNAINGAN 154
+A++ A + +WV Y+ VGNE G LVPAM+N+ A+ A
Sbjct: 61 NLAASPAAAASWV-KSNIQAYPKVSFRYVCVGNEVAGGATRN--LVPAMKNVHGALVAAG 117
Query: 155 LGSQIKVSTAIESRAL 170
LG IKV+T++ L
Sbjct: 118 LG-HIKVTTSVSQAIL 132
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 74/132 (56%), Gaps = 3/132 (2%)
Query: 35 IVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLR 94
I VCYG+ GNNLPS+ DV+ L I MRIY + +AL ALR S I ++L + N+ L
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 95 RIASNQAESNTWVXXXXXXXXXXXXXXYIAVGNEAKPGDDFAWYLVPAMRNIQNAINGAN 154
IA++ + + +WV YIA GNE + G + ++PAMRN+ NA A
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGATQS--ILPAMRNL-NAALSAA 117
Query: 155 LGSQIKVSTAIE 166
IKVST+I
Sbjct: 118 GLGAIKVSTSIR 129
>pdb|1R9L|A Chain A, Structure Analysis Of Prox In Complex With Glycine Betaine
pdb|1R9Q|A Chain A, Structure Analysis Of Prox In Complex With Proline Betaine
Length = 309
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 125 VGNEAKPGDDFAWYLVP--AMRNIQNA----INGANLGSQIKVSTAIESRA 169
V NE KPG D W VP A+ +NA NGAN G + + ++A
Sbjct: 193 VSNELKPGKDVVWLQVPFSALPGDKNADTKLPNGANYGFPVSTMHIVANKA 243
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 27.3 bits (59), Expect = 4.8, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 48 SKPDVIALCYQNNIRRMRIYDPNREALEALRGS 80
+KP V+ L YQN I M Y+ EAL + S
Sbjct: 385 TKPVVLKLPYQNAIFGMSSYEEEEEALITIENS 417
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,793,539
Number of Sequences: 62578
Number of extensions: 115647
Number of successful extensions: 207
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 8
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)