Query 046740
Match_columns 171
No_of_seqs 140 out of 717
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 04:01:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 9.9E-48 2.1E-52 333.6 13.2 136 35-171 1-136 (310)
2 COG5309 Exo-beta-1,3-glucanase 98.8 8.9E-08 1.9E-12 83.0 11.1 127 33-168 44-181 (305)
3 PF03198 Glyco_hydro_72: Gluca 97.4 0.0011 2.4E-08 58.6 9.0 123 35-162 30-180 (314)
4 PF00150 Cellulase: Cellulase 91.1 1.9 4.1E-05 35.2 8.8 123 35-159 11-168 (281)
5 PRK10150 beta-D-glucuronidase; 89.8 4.9 0.00011 37.9 11.3 80 52-131 318-420 (604)
6 PF00925 GTP_cyclohydro2: GTP 88.2 0.53 1.1E-05 37.7 3.2 40 50-89 129-168 (169)
7 PF02836 Glyco_hydro_2_C: Glyc 88.2 1.4 3.1E-05 37.5 6.0 94 35-129 18-132 (298)
8 smart00481 POLIIIAc DNA polyme 84.1 3 6.5E-05 27.7 4.8 42 47-88 15-61 (67)
9 PRK00393 ribA GTP cyclohydrola 82.4 2.1 4.5E-05 35.2 4.2 33 53-85 134-166 (197)
10 TIGR00505 ribA GTP cyclohydrol 82.1 2.2 4.8E-05 34.9 4.2 33 53-85 131-163 (191)
11 PF07745 Glyco_hydro_53: Glyco 78.0 3.4 7.4E-05 36.9 4.3 83 49-131 26-137 (332)
12 cd00641 GTP_cyclohydro2 GTP cy 77.4 3.7 8.1E-05 33.5 4.1 36 53-88 133-168 (193)
13 PRK09314 bifunctional 3,4-dihy 72.9 4.8 0.0001 36.2 4.0 36 50-85 298-334 (339)
14 PRK12485 bifunctional 3,4-dihy 72.8 4.6 0.0001 36.7 3.8 33 52-85 330-362 (369)
15 cd04743 NPD_PKS 2-Nitropropane 72.3 27 0.00058 31.2 8.4 79 33-129 56-134 (320)
16 PF13721 SecD-TM1: SecD export 72.2 37 0.0008 25.1 8.2 79 17-112 15-94 (101)
17 PRK08815 GTP cyclohydrolase; P 70.7 6.1 0.00013 35.9 4.1 37 53-89 305-341 (375)
18 PRK14019 bifunctional 3,4-dihy 70.1 5.9 0.00013 35.9 3.9 37 52-89 327-363 (367)
19 PF13756 Stimulus_sens_1: Stim 67.6 3.9 8.5E-05 30.7 1.9 27 48-74 2-31 (112)
20 PRK09311 bifunctional 3,4-dihy 66.2 9.3 0.0002 35.0 4.4 37 52-88 338-374 (402)
21 PRK09319 bifunctional 3,4-dihy 65.6 9.1 0.0002 36.7 4.3 38 52-89 342-379 (555)
22 PRK07198 hypothetical protein; 65.1 5.8 0.00013 36.7 2.8 37 52-88 337-374 (418)
23 PRK09004 FMN-binding protein M 65.0 62 0.0014 24.9 8.7 108 34-155 3-114 (146)
24 PRK09318 bifunctional 3,4-dihy 64.3 10 0.00023 34.6 4.3 38 52-89 319-356 (387)
25 PLN02831 Bifunctional GTP cycl 63.2 11 0.00024 35.1 4.4 38 52-89 372-409 (450)
26 TIGR00559 pdxJ pyridoxine 5'-p 61.4 14 0.0003 31.8 4.3 36 47-83 110-146 (237)
27 PRK05723 flavodoxin; Provision 59.4 83 0.0018 24.5 9.3 115 34-155 2-117 (151)
28 cd00003 PNPsynthase Pyridoxine 59.1 16 0.00035 31.4 4.3 37 47-84 110-147 (234)
29 PRK05265 pyridoxine 5'-phospha 57.0 18 0.00039 31.1 4.3 36 47-83 113-149 (239)
30 cd02875 GH18_chitobiase Chitob 57.0 90 0.002 27.7 8.9 104 56-164 51-159 (358)
31 PF02579 Nitro_FeMo-Co: Dinitr 56.2 54 0.0012 22.4 6.0 47 48-95 41-87 (94)
32 PF03740 PdxJ: Pyridoxal phosp 53.6 20 0.00043 30.9 4.0 38 46-84 110-148 (239)
33 TIGR03632 bact_S11 30S ribosom 52.3 29 0.00064 25.9 4.3 36 50-85 50-90 (108)
34 cd06156 eu_AANH_C_2 A group of 52.0 26 0.00056 26.2 4.0 29 135-163 31-59 (118)
35 PRK10340 ebgA cryptic beta-D-g 51.8 80 0.0017 32.3 8.5 95 35-130 337-451 (1021)
36 PRK09525 lacZ beta-D-galactosi 51.7 70 0.0015 32.8 8.1 95 35-130 353-464 (1027)
37 COG0807 RibA GTP cyclohydrolas 51.1 27 0.00058 29.1 4.3 39 52-90 132-170 (193)
38 PF05336 DUF718: Domain of unk 49.8 14 0.0003 27.4 2.2 53 48-108 24-79 (106)
39 TIGR03628 arch_S11P archaeal r 48.8 32 0.00069 26.3 4.1 37 49-85 52-101 (114)
40 COG1433 Uncharacterized conser 48.7 51 0.0011 25.4 5.2 50 44-94 47-98 (121)
41 COG0117 RibD Pyrimidine deamin 48.5 32 0.0007 27.5 4.2 43 53-95 88-136 (146)
42 PRK03562 glutathione-regulated 46.8 27 0.00058 33.4 4.2 80 34-120 403-494 (621)
43 PRK14338 (dimethylallyl)adenos 46.4 1.1E+02 0.0023 28.1 7.9 92 35-127 207-316 (459)
44 COG0635 HemN Coproporphyrinoge 45.7 68 0.0015 29.3 6.4 109 49-162 136-272 (416)
45 PTZ00129 40S ribosomal protein 44.3 46 0.001 26.7 4.5 38 49-86 78-128 (149)
46 cd00851 MTH1175 This uncharact 40.9 78 0.0017 22.0 4.9 45 49-94 52-96 (103)
47 PRK03659 glutathione-regulated 40.1 37 0.0008 32.3 4.0 46 37-89 406-451 (601)
48 COG4669 EscJ Type III secretor 40.1 34 0.00073 29.6 3.3 61 43-121 25-87 (246)
49 COG0854 PdxJ Pyridoxal phospha 40.0 48 0.001 28.6 4.2 39 45-84 109-148 (243)
50 TIGR02026 BchE magnesium-proto 39.4 95 0.0021 28.7 6.4 72 35-106 270-365 (497)
51 CHL00041 rps11 ribosomal prote 38.9 77 0.0017 24.0 4.9 35 51-85 64-103 (116)
52 PF06722 DUF1205: Protein of u 38.8 20 0.00043 26.3 1.6 30 69-98 62-91 (97)
53 PRK05309 30S ribosomal protein 38.7 63 0.0014 25.0 4.4 36 50-85 67-107 (128)
54 PRK14328 (dimethylallyl)adenos 37.7 1.3E+02 0.0028 27.4 6.9 92 35-127 199-308 (439)
55 PRK09989 hypothetical protein; 37.5 78 0.0017 26.1 5.1 51 35-86 4-58 (258)
56 PF00107 ADH_zinc_N: Zinc-bind 35.5 84 0.0018 22.4 4.5 38 53-90 27-67 (130)
57 PRK09607 rps11p 30S ribosomal 35.5 67 0.0014 25.2 4.1 37 49-85 59-108 (132)
58 PTZ00090 40S ribosomal protein 35.0 70 0.0015 27.5 4.4 36 51-86 171-210 (233)
59 PF00411 Ribosomal_S11: Riboso 34.9 71 0.0015 23.8 4.1 35 51-85 51-90 (110)
60 PF13344 Hydrolase_6: Haloacid 34.8 69 0.0015 23.1 3.9 61 43-110 12-77 (101)
61 PF02254 TrkA_N: TrkA-N domain 34.6 98 0.0021 21.8 4.7 39 50-89 11-49 (116)
62 TIGR02625 YiiL_rotase L-rhamno 34.2 40 0.00086 25.1 2.6 51 49-106 24-75 (102)
63 cd03412 CbiK_N Anaerobic cobal 34.2 1E+02 0.0022 23.3 4.9 55 43-97 52-120 (127)
64 PRK14336 (dimethylallyl)adenos 33.0 2.7E+02 0.0059 25.2 8.2 88 35-126 176-284 (418)
65 PF07985 SRR1: SRR1; InterPro 32.6 73 0.0016 21.0 3.4 34 37-70 3-43 (56)
66 COG4213 XylF ABC-type xylose t 32.5 85 0.0018 28.4 4.7 76 69-162 173-248 (341)
67 PF00135 COesterase: Carboxyle 32.3 23 0.00051 31.5 1.2 17 99-115 188-204 (535)
68 PF06574 FAD_syn: FAD syntheta 31.9 1.4E+02 0.003 23.5 5.4 56 69-132 63-119 (157)
69 PRK11660 putative transporter; 31.5 88 0.0019 29.5 5.0 19 74-93 516-534 (568)
70 cd01424 MGS_CPS_II Methylglyox 31.4 85 0.0018 22.6 3.9 41 50-90 33-76 (110)
71 PF02811 PHP: PHP domain; Int 31.3 1E+02 0.0022 22.9 4.5 44 46-89 15-63 (175)
72 cd06844 STAS Sulphate Transpor 31.0 83 0.0018 22.1 3.7 33 51-84 62-94 (100)
73 smart00851 MGS MGS-like domain 30.9 82 0.0018 21.9 3.6 40 51-90 21-64 (90)
74 COG0251 TdcF Putative translat 30.6 52 0.0011 25.1 2.8 28 135-162 49-78 (130)
75 PF02142 MGS: MGS-like domain 29.8 1.4E+02 0.003 21.0 4.7 46 49-94 19-73 (95)
76 TIGR02631 xylA_Arthro xylose i 29.8 1.3E+02 0.0029 27.1 5.6 44 47-90 32-90 (382)
77 cd01422 MGS Methylglyoxal synt 29.8 97 0.0021 23.0 4.1 41 50-90 34-79 (115)
78 cd06152 YjgF_YER057c_UK114_lik 29.2 57 0.0012 24.2 2.7 28 135-162 32-62 (114)
79 PF13377 Peripla_BP_3: Peripla 28.4 2E+02 0.0043 20.9 5.6 90 53-163 1-102 (160)
80 cd00562 NifX_NifB This CD repr 28.0 1.7E+02 0.0036 20.2 4.9 46 49-94 50-95 (102)
81 TIGR02534 mucon_cyclo muconate 28.0 1E+02 0.0023 27.0 4.6 38 52-89 149-195 (368)
82 TIGR03239 GarL 2-dehydro-3-deo 28.0 99 0.0021 26.2 4.3 54 37-93 12-74 (249)
83 PF08800 VirE_N: VirE N-termin 28.0 39 0.00085 26.0 1.7 55 44-107 39-96 (136)
84 TIGR03151 enACPred_II putative 27.9 2.4E+02 0.0053 24.5 6.8 56 33-91 63-119 (307)
85 TIGR00640 acid_CoA_mut_C methy 27.8 1.9E+02 0.0042 22.0 5.5 48 47-94 40-99 (132)
86 COG3050 HolD DNA polymerase II 27.6 1.3E+02 0.0028 23.7 4.5 43 55-133 7-49 (133)
87 cd02874 GH18_CFLE_spore_hydrol 27.6 1.3E+02 0.0028 25.6 5.0 80 69-155 46-138 (313)
88 PF03720 UDPG_MGDP_dh_C: UDP-g 27.5 52 0.0011 23.8 2.2 42 36-78 4-47 (106)
89 TIGR03234 OH-pyruv-isom hydrox 27.4 1.3E+02 0.0027 24.6 4.7 51 35-86 3-57 (254)
90 PRK13586 1-(5-phosphoribosyl)- 27.3 2.3E+02 0.005 23.7 6.4 44 47-90 30-84 (232)
91 PF02449 Glyco_hydro_42: Beta- 27.1 2.2E+02 0.0047 25.0 6.4 42 50-91 13-70 (374)
92 PRK14339 (dimethylallyl)adenos 26.7 4.8E+02 0.01 23.6 8.9 89 35-127 179-291 (420)
93 PLN02424 ketopantoate hydroxym 26.2 1.8E+02 0.0038 26.3 5.7 47 48-94 111-166 (332)
94 PF06180 CbiK: Cobalt chelatas 26.2 2.5E+02 0.0055 24.2 6.5 58 46-108 182-255 (262)
95 PRK05718 keto-hydroxyglutarate 26.1 1.4E+02 0.003 24.9 4.7 54 48-110 117-176 (212)
96 PF03102 NeuB: NeuB family; I 25.6 1.9E+02 0.0041 24.6 5.5 67 35-109 68-137 (241)
97 PRK14327 (dimethylallyl)adenos 25.5 3.6E+02 0.0079 25.4 7.9 92 34-126 263-372 (509)
98 cd06150 YjgF_YER057c_UK114_lik 25.3 41 0.00089 24.2 1.3 28 135-162 27-56 (105)
99 cd00598 GH18_chitinase-like Th 24.9 88 0.0019 24.4 3.2 82 71-155 52-142 (210)
100 PF13460 NAD_binding_10: NADH( 24.6 3.1E+02 0.0066 20.6 7.3 88 50-164 12-99 (183)
101 cd01445 TST_Repeats Thiosulfat 24.5 99 0.0021 23.5 3.4 26 45-70 76-104 (138)
102 PRK00124 hypothetical protein; 24.3 56 0.0012 26.1 2.0 56 96-155 50-120 (151)
103 PRK07379 coproporphyrinogen II 24.3 2.4E+02 0.0052 25.3 6.3 109 50-162 115-251 (400)
104 PRK13347 coproporphyrinogen II 24.3 1.3E+02 0.0027 27.6 4.5 109 50-162 152-287 (453)
105 PF04909 Amidohydro_2: Amidohy 24.3 1.4E+02 0.003 23.8 4.3 88 31-121 69-168 (273)
106 PF08002 DUF1697: Protein of u 24.3 70 0.0015 24.7 2.5 30 36-67 10-39 (137)
107 cd02199 YjgF_YER057c_UK114_lik 24.2 70 0.0015 24.7 2.5 27 137-163 56-87 (142)
108 PRK00311 panB 3-methyl-2-oxobu 24.2 74 0.0016 27.5 2.9 36 50-85 97-134 (264)
109 PF00834 Ribul_P_3_epim: Ribul 24.1 4E+02 0.0088 21.8 8.7 97 49-161 69-171 (201)
110 cd00532 MGS-like MGS-like doma 24.0 1.8E+02 0.0039 21.2 4.6 41 50-90 32-77 (112)
111 PRK10558 alpha-dehydro-beta-de 24.0 1.3E+02 0.0029 25.5 4.4 47 45-93 26-81 (256)
112 COG4032 Predicted thiamine-pyr 23.8 53 0.0012 26.7 1.7 29 68-96 5-33 (172)
113 PF01042 Ribonuc_L-PSP: Endori 23.6 1E+02 0.0022 22.6 3.2 28 135-162 41-70 (121)
114 PF02776 TPP_enzyme_N: Thiamin 23.5 1.9E+02 0.0041 22.3 4.9 45 50-95 5-52 (172)
115 PRK01372 ddl D-alanine--D-alan 22.9 2.1E+02 0.0047 23.8 5.4 52 34-86 6-61 (304)
116 TIGR02876 spore_yqfD sporulati 22.6 3.4E+02 0.0074 24.5 6.9 34 42-75 111-145 (382)
117 PF12558 DUF3744: ATP-binding 22.6 1.3E+02 0.0029 20.8 3.4 53 54-113 3-57 (74)
118 PRK10669 putative cation:proto 22.6 1.3E+02 0.0029 28.0 4.4 48 37-91 423-470 (558)
119 cd03012 TlpA_like_DipZ_like Tl 22.3 1.8E+02 0.0039 21.0 4.3 52 32-84 57-108 (126)
120 cd07038 TPP_PYR_PDC_IPDC_like 22.3 2.4E+02 0.0052 21.9 5.2 36 52-87 3-41 (162)
121 KOG0078 GTP-binding protein SE 22.0 2.1E+02 0.0045 24.2 5.0 82 30-131 40-129 (207)
122 cd06557 KPHMT-like Ketopantoat 21.8 86 0.0019 26.9 2.8 34 52-85 96-131 (254)
123 cd06151 YjgF_YER057c_UK114_lik 21.6 1E+02 0.0022 23.0 2.9 29 135-163 39-69 (126)
124 PF13727 CoA_binding_3: CoA-bi 21.4 1.3E+02 0.0027 22.4 3.4 38 48-85 129-172 (175)
125 PRK14114 1-(5-phosphoribosyl)- 21.4 3.4E+02 0.0073 22.9 6.3 41 47-87 30-79 (241)
126 COG3831 Uncharacterized conser 21.1 1.3E+02 0.0029 22.0 3.2 32 31-76 23-54 (85)
127 PRK10629 EnvZ/OmpR regulon mod 21.1 3.9E+02 0.0085 20.5 8.0 66 31-113 34-99 (127)
128 PRK14334 (dimethylallyl)adenos 20.9 2.6E+02 0.0056 25.4 5.8 84 39-126 197-297 (440)
129 TIGR01579 MiaB-like-C MiaB-lik 20.8 1.8E+02 0.0039 26.0 4.8 89 35-127 190-299 (414)
130 PRK12677 xylose isomerase; Pro 20.8 2.3E+02 0.005 25.6 5.4 43 48-90 32-89 (384)
131 PF08443 RimK: RimK-like ATP-g 20.8 1.2E+02 0.0025 24.0 3.2 21 111-131 80-103 (190)
132 TIGR03837 efp_adjacent_2 conse 20.7 94 0.002 28.5 2.9 57 53-110 22-119 (371)
133 PRK07135 dnaE DNA polymerase I 20.6 1.7E+02 0.0037 30.1 4.9 45 44-88 16-65 (973)
134 PRK01045 ispH 4-hydroxy-3-meth 20.6 1.3E+02 0.0028 26.6 3.7 65 37-109 34-112 (298)
135 PRK09437 bcp thioredoxin-depen 20.4 2.5E+02 0.0054 20.9 4.8 43 31-80 64-106 (154)
136 PRK01222 N-(5'-phosphoribosyl) 20.3 2.2E+02 0.0047 23.4 4.8 49 32-86 55-105 (210)
137 TIGR01182 eda Entner-Doudoroff 20.3 3E+02 0.0064 22.9 5.6 66 48-131 110-181 (204)
138 cd02071 MM_CoA_mut_B12_BD meth 20.3 3.5E+02 0.0076 19.8 5.6 51 42-93 33-95 (122)
139 cd01525 RHOD_Kc Member of the 20.3 1.9E+02 0.0042 19.9 4.0 30 37-69 69-98 (105)
140 PLN02232 ubiquinone biosynthes 20.1 87 0.0019 24.2 2.3 26 45-70 124-149 (160)
141 TIGR02371 ala_DH_arch alanine 20.0 1.2E+02 0.0027 26.4 3.4 53 31-87 127-183 (325)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=9.9e-48 Score=333.65 Aligned_cols=136 Identities=49% Similarity=0.751 Sum_probs=115.9
Q ss_pred eeEeecCCCCCCCChHHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCCcchHHHhhhChHHHHHHHHhhcccc
Q 046740 35 IVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQNF 114 (171)
Q Consensus 35 iGVnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vpN~~l~~lAss~~~A~~WV~~nV~py 114 (171)
|||||||+|||||+|++||+|||+++|++|||||+|+++|+||+||||+|+++|||++++++++++..|..||++||.||
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEecCCCCCCCcchhhhhHHHHHHHHHHHhCCCCCCcEEeccccCCcCC
Q 046740 115 ANNVKFKYIAVGNEAKPGDDFAWYLVPAMRNIQNAINGANLGSQIKVSTAIESRALE 171 (171)
Q Consensus 115 ~p~~~I~~IaVGNEv~~~~~~~~~lvPAm~Ni~~AL~~~gL~~~IKVSTa~~~~vL~ 171 (171)
+|+++|++|+||||+++.... .+|||||+|+|+||.++||+++|||||+|++++|+
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~-~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~ 136 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDN-AYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLS 136 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGG-GGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEE
T ss_pred CcccceeeeecccccccCccc-eeeccHHHHHHHHHHhcCcCCcceecccccccccc
Confidence 999999999999999986532 28999999999999999999999999999999873
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=98.76 E-value=8.9e-08 Score=82.95 Aligned_cols=127 Identities=20% Similarity=0.290 Sum_probs=100.3
Q ss_pred ceeeEeecCCCCC--CCChHHHHH---HHHhcCcCeEEeeCCCHH----HHHHhhCCCceEEecC-CcchHHHhhhChHH
Q 046740 33 AQIVVCYGMCGNN--LPSKPDVIA---LCYQNNIRRMRIYDPNRE----ALEALRGSNIEVMLGL-PNNDLRRIASNQAE 102 (171)
Q Consensus 33 ~~iGVnyG~~g~n--LPsp~~Vv~---Llks~~I~~vRiyd~d~~----vL~Al~gsgI~v~v~v-pN~~l~~lAss~~~ 102 (171)
+..|+|||..-++ -|+.++|.. +|++..+ .+|+|..|+. ++.|...+|+++.+|+ |-+++.. .
T Consensus 44 g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~-~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~------~ 116 (305)
T COG5309 44 GFLAFTLGPYNDDGTCKSADQVASDLELLASYTH-SIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHD------A 116 (305)
T ss_pred cccceeccccCCCCCCcCHHHHHhHHHHhccCCc-eEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhh------h
Confidence 3469999998777 589999865 6677766 9999987776 7889899999999999 6566652 2
Q ss_pred HHHHHHhhccccCCCceEEEEEecCCCCCCCc-chhhhhHHHHHHHHHHHhCCCCCCcEEeccccCC
Q 046740 103 SNTWVQNNVQNFANNVKFKYIAVGNEAKPGDD-FAWYLVPAMRNIQNAINGANLGSQIKVSTAIESR 168 (171)
Q Consensus 103 A~~WV~~nV~py~p~~~I~~IaVGNEv~~~~~-~~~~lvPAm~Ni~~AL~~~gL~~~IKVSTa~~~~ 168 (171)
.+.=....+.||+.--.++.|.||||.+-.++ .+.+|..-+..++.+|+++|.++ +|+|+=+..
T Consensus 117 ~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g--pV~T~dsw~ 181 (305)
T COG5309 117 VEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG--PVTTVDSWN 181 (305)
T ss_pred HHHHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC--ceeecccce
Confidence 22234456677776678999999999998777 67889999999999999999965 788865443
No 3
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.37 E-value=0.0011 Score=58.57 Aligned_cols=123 Identities=24% Similarity=0.365 Sum_probs=69.2
Q ss_pred eeEeecCCCC-------CCCChHHHH----HHHHhcCcCeEEeeCCCHH-----HHHHhhCCCceEEecC--CcchHHHh
Q 046740 35 IVVCYGMCGN-------NLPSKPDVI----ALCYQNNIRRMRIYDPNRE-----ALEALRGSNIEVMLGL--PNNDLRRI 96 (171)
Q Consensus 35 iGVnyG~~g~-------nLPsp~~Vv----~Llks~~I~~vRiyd~d~~-----vL~Al~gsgI~v~v~v--pN~~l~~l 96 (171)
.||.|=..++ +..+-.+.. .++|+.||.-+|+|.-||+ -.++|+..||-|++++ |+..|.+-
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~~sI~r~ 109 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPNGSINRS 109 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTTBS--TT
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCCccccCC
Confidence 5999977665 222333444 4999999999999977665 5999999999999998 54445433
Q ss_pred hhChHHHHHHHHhh-------ccccCCCceEEEEEecCCCCCCCc---chhhhhHHHHHHHHHHHhCCCCCCcEEe
Q 046740 97 ASNQAESNTWVQNN-------VQNFANNVKFKYIAVGNEAKPGDD---FAWYLVPAMRNIQNAINGANLGSQIKVS 162 (171)
Q Consensus 97 Ass~~~A~~WV~~n-------V~py~p~~~I~~IaVGNEv~~~~~---~~~~lvPAm~Ni~~AL~~~gL~~~IKVS 162 (171)
.-+.+|=..- |-.|-.-.|.-...+||||..... .++++=.+.|.+++=+++.|. ++|.|.
T Consensus 110 ----~P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~-R~IPVG 180 (314)
T PF03198_consen 110 ----DPAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGY-RSIPVG 180 (314)
T ss_dssp ----S------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EE
T ss_pred ----CCcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCC-CCCcee
Confidence 2234552222 222222246668889999996432 577888888899999999887 457775
No 4
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=91.12 E-value=1.9 Score=35.15 Aligned_cols=123 Identities=18% Similarity=0.098 Sum_probs=78.1
Q ss_pred eeEeecCCCCCCCChHHHHHHHHhcCcCeEEeeC-------CCH-------------HHHHHhhCCCceEEecCCcc-hH
Q 046740 35 IVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYD-------PNR-------------EALEALRGSNIEVMLGLPNN-DL 93 (171)
Q Consensus 35 iGVnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd-------~d~-------------~vL~Al~gsgI~v~v~vpN~-~l 93 (171)
-|+|-- ..++- ..++..+.+|+.|++.|||.- +++ .++++++.-||.|++++-+. ..
T Consensus 11 ~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w 88 (281)
T PF00150_consen 11 RGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPGW 88 (281)
T ss_dssp EEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTC
T ss_pred eeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 466654 22222 778999999999999999962 222 16888999999999988653 00
Q ss_pred ---HHhhhChHHHHHHHHh---hccccC-CCceEEEEEecCCCCCCCc-------chhhhhHHHHHHHHHHHhCCCCCCc
Q 046740 94 ---RRIASNQAESNTWVQN---NVQNFA-NNVKFKYIAVGNEAKPGDD-------FAWYLVPAMRNIQNAINGANLGSQI 159 (171)
Q Consensus 94 ---~~lAss~~~A~~WV~~---nV~py~-p~~~I~~IaVGNEv~~~~~-------~~~~lvPAm~Ni~~AL~~~gL~~~I 159 (171)
...........+|.++ .+...| ..-.+.++-+.||+..... ....+.+.++.+..++++.+-+..|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i 168 (281)
T PF00150_consen 89 ANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLI 168 (281)
T ss_dssp SSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEE
T ss_pred cccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCccee
Confidence 1111233334444443 222222 3344668999999987422 1256778889999999999976433
No 5
>PRK10150 beta-D-glucuronidase; Provisional
Probab=89.80 E-value=4.9 Score=37.91 Aligned_cols=80 Identities=16% Similarity=0.071 Sum_probs=54.9
Q ss_pred HHHHHHhcCcCeEEee--CCCHHHHHHhhCCCceEEecCCcchHH------------------HhhhChHH---HHHHHH
Q 046740 52 VIALCYQNNIRRMRIY--DPNREALEALRGSNIEVMLGLPNNDLR------------------RIASNQAE---SNTWVQ 108 (171)
Q Consensus 52 Vv~Llks~~I~~vRiy--d~d~~vL~Al~gsgI~v~v~vpN~~l~------------------~lAss~~~---A~~WV~ 108 (171)
-++++|+.|++.||+. =.+++.++++-.-||-|+..+|..... ..+.++.. ...-++
T Consensus 318 d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (604)
T PRK10150 318 DHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIR 397 (604)
T ss_pred HHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 3678999999999983 347889999999999999888742110 00011122 223356
Q ss_pred hhccccCCCceEEEEEecCCCCC
Q 046740 109 NNVQNFANNVKFKYIAVGNEAKP 131 (171)
Q Consensus 109 ~nV~py~p~~~I~~IaVGNEv~~ 131 (171)
+-|..+...-.|-.=.+|||.-.
T Consensus 398 ~mv~r~~NHPSIi~Ws~gNE~~~ 420 (604)
T PRK10150 398 ELIARDKNHPSVVMWSIANEPAS 420 (604)
T ss_pred HHHHhccCCceEEEEeeccCCCc
Confidence 67777766667778888999753
No 6
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=88.19 E-value=0.53 Score=37.72 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCC
Q 046740 50 PDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLP 89 (171)
Q Consensus 50 ~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vp 89 (171)
.--.|.||..||++||+...+|.-+.+|.|-||+|.=.+|
T Consensus 129 gigaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 129 GIGAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 3467899999999999999999999999999999975544
No 7
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=88.16 E-value=1.4 Score=37.46 Aligned_cols=94 Identities=15% Similarity=0.148 Sum_probs=57.3
Q ss_pred eeEeecC----CCCCCCChHHH---HHHHHhcCcCeEEee--CCCHHHHHHhhCCCceEEecCCcchH---HH------h
Q 046740 35 IVVCYGM----CGNNLPSKPDV---IALCYQNNIRRMRIY--DPNREALEALRGSNIEVMLGLPNNDL---RR------I 96 (171)
Q Consensus 35 iGVnyG~----~g~nLPsp~~V---v~Llks~~I~~vRiy--d~d~~vL~Al~gsgI~v~v~vpN~~l---~~------l 96 (171)
-|||++. .|.-. ++++. ++++|+.|++.||+. -++|..++++-.-||-|+..+|.... +. .
T Consensus 18 ~Gv~~h~~~~~~g~a~-~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 18 RGVNRHQDYPGLGRAM-PDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEE-S-BTTTBT----HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEeeCcCcccccccC-CHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 4899775 33333 34433 457899999999985 56789999999999999998876211 11 1
Q ss_pred hhChH---HHHHHHHhhccccCCCceEEEEEecCCC
Q 046740 97 ASNQA---ESNTWVQNNVQNFANNVKFKYIAVGNEA 129 (171)
Q Consensus 97 Ass~~---~A~~WV~~nV~py~p~~~I~~IaVGNEv 129 (171)
+.++. .+.+-+++.|..+...-.|-.=.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 12333 3345667777777655566667789998
No 8
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=84.11 E-value=3 Score=27.65 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=35.6
Q ss_pred CChHHHHHHHHhcCcCeEEeeCCC-----HHHHHHhhCCCceEEecC
Q 046740 47 PSKPDVIALCYQNNIRRMRIYDPN-----REALEALRGSNIEVMLGL 88 (171)
Q Consensus 47 Psp~~Vv~Llks~~I~~vRiyd~d-----~~vL~Al~gsgI~v~v~v 88 (171)
-+|.+.++..+.+|++.+=+-|-+ +...+..+..||+++.|+
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEE
Confidence 368999999999999999999888 666777777888888776
No 9
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=82.43 E-value=2.1 Score=35.22 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=31.4
Q ss_pred HHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEE
Q 046740 53 IALCYQNNIRRMRIYDPNREALEALRGSNIEVM 85 (171)
Q Consensus 53 v~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~ 85 (171)
.|.|+..||++||+...+|.-..+|.|-||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 899999999999999999988999999999997
No 10
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=82.07 E-value=2.2 Score=34.86 Aligned_cols=33 Identities=15% Similarity=0.390 Sum_probs=31.2
Q ss_pred HHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEE
Q 046740 53 IALCYQNNIRRMRIYDPNREALEALRGSNIEVM 85 (171)
Q Consensus 53 v~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~ 85 (171)
.|.|+..||++||+...+|.-..+|.|-||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 889999999999999989988999999999997
No 11
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=77.98 E-value=3.4 Score=36.90 Aligned_cols=83 Identities=16% Similarity=0.361 Sum_probs=45.1
Q ss_pred hHHHHHHHHhcCcCeE--Eee-CCCH----------HHHHHhhCCCceEEecC--------CcchHH-------HhhhCh
Q 046740 49 KPDVIALCYQNNIRRM--RIY-DPNR----------EALEALRGSNIEVMLGL--------PNNDLR-------RIASNQ 100 (171)
Q Consensus 49 p~~Vv~Llks~~I~~v--Riy-d~d~----------~vL~Al~gsgI~v~v~v--------pN~~l~-------~lAss~ 100 (171)
+.++.++||.+|+.-| |+| ||.. ...+--+.-|++|+++. |..|.. +++.=.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 5789999999998755 555 5544 13444467999999986 444322 111112
Q ss_pred HHHHHHHHhhcccc-CCCceEEEEEecCCCCC
Q 046740 101 AESNTWVQNNVQNF-ANNVKFKYIAVGNEAKP 131 (171)
Q Consensus 101 ~~A~~WV~~nV~py-~p~~~I~~IaVGNEv~~ 131 (171)
.+..++.++-+..+ --++....+-||||+-.
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~ 137 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINN 137 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGG
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccc
Confidence 44455555555444 23688899999999764
No 12
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=77.41 E-value=3.7 Score=33.47 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=32.3
Q ss_pred HHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecC
Q 046740 53 IALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGL 88 (171)
Q Consensus 53 v~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~v 88 (171)
.|.|+..||.+||+...++.-..||.|-||+|+=-+
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERV 168 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 889999999999999888888999999999997443
No 13
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=72.86 E-value=4.8 Score=36.18 Aligned_cols=36 Identities=8% Similarity=0.162 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCcCeEEeeCCC-HHHHHHhhCCCceEE
Q 046740 50 PDVIALCYQNNIRRMRIYDPN-REALEALRGSNIEVM 85 (171)
Q Consensus 50 ~~Vv~Llks~~I~~vRiyd~d-~~vL~Al~gsgI~v~ 85 (171)
.-..|.||..||++||+...+ |.=..+|.+-||+|.
T Consensus 298 gigaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 298 GIGAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred hHHHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 345889999999999999999 988999999999986
No 14
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=72.79 E-value=4.6 Score=36.65 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=31.0
Q ss_pred HHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEE
Q 046740 52 VIALCYQNNIRRMRIYDPNREALEALRGSNIEVM 85 (171)
Q Consensus 52 Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~ 85 (171)
..|+||..||++|||. .||.=..+|.+-||+|.
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 5899999999999999 68999999999999996
No 15
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=72.26 E-value=27 Score=31.18 Aligned_cols=79 Identities=15% Similarity=0.110 Sum_probs=56.3
Q ss_pred ceeeEeecCCCCCCCChHHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCCcchHHHhhhChHHHHHHHHhhcc
Q 046740 33 AQIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQ 112 (171)
Q Consensus 33 ~~iGVnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vpN~~l~~lAss~~~A~~WV~~nV~ 112 (171)
.-+|||.-...++ |..++.++.+...+++-|=+...+|+..+.|+..||.|+..+|+ +..|..|.+.-
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s---------~~~A~~a~~~G-- 123 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS---------PGLLKQFLENG-- 123 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC---------HHHHHHHHHcC--
Confidence 4589998433333 44467788888889988888877777789999999999988874 34455555543
Q ss_pred ccCCCceEEEEEecCCC
Q 046740 113 NFANNVKFKYIAVGNEA 129 (171)
Q Consensus 113 py~p~~~I~~IaVGNEv 129 (171)
++. -|+-|.|.
T Consensus 124 -----aD~-vVaqG~EA 134 (320)
T cd04743 124 -----ARK-FIFEGREC 134 (320)
T ss_pred -----CCE-EEEecCcC
Confidence 332 47779886
No 16
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=72.16 E-value=37 Score=25.07 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=51.3
Q ss_pred HHHHHHHHHhh-hccCCceeeEeecCCCCCCCChHHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCCcchHHH
Q 046740 17 VLLLLGLLVAI-LDTTSAQIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRR 95 (171)
Q Consensus 17 ~ll~~~~~~~~-~~~~~~~iGVnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vpN~~l~~ 95 (171)
.++++++.+.| +-...+.|-|.-.+.|..+|...++-+.|+++||.--++.. .+.++.+-..-+++++
T Consensus 15 vl~~~~lyALPnlyge~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i~~---------~~~~llirf~~~~~Ql-- 83 (101)
T PF13721_consen 15 VLLLGALYALPNLYGEDPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSIEQ---------EGDSLLIRFDSTDQQL-- 83 (101)
T ss_pred HHHHHHHHHhhhccCCCCcEEEecCCCCccCChHHHHHHHHHHCCCCcceEEe---------eCCEEEEEECCHHHHH--
Confidence 34444443333 12345678899888888999999999999999998766643 3345555555444443
Q ss_pred hhhChHHHHHHHHhhcc
Q 046740 96 IASNQAESNTWVQNNVQ 112 (171)
Q Consensus 96 lAss~~~A~~WV~~nV~ 112 (171)
.|++.+++.+-
T Consensus 84 ------~Ak~~L~~~L~ 94 (101)
T PF13721_consen 84 ------KAKDVLSKALG 94 (101)
T ss_pred ------HHHHHHHHHcC
Confidence 46777766654
No 17
>PRK08815 GTP cyclohydrolase; Provisional
Probab=70.71 E-value=6.1 Score=35.94 Aligned_cols=37 Identities=30% Similarity=0.352 Sum_probs=33.2
Q ss_pred HHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCC
Q 046740 53 IALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLP 89 (171)
Q Consensus 53 v~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vp 89 (171)
.|.|+..||++||+..-+|.=..+|.+-||+|.=-+|
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 8899999999999999999999999999999974443
No 18
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=70.06 E-value=5.9 Score=35.86 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=32.8
Q ss_pred HHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCC
Q 046740 52 VIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLP 89 (171)
Q Consensus 52 Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vp 89 (171)
..|+||..||++|||.. ||.=..+|.+-||+|.=-+|
T Consensus 327 gaqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~~ 363 (367)
T PRK14019 327 GAQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYVP 363 (367)
T ss_pred HHHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEec
Confidence 38999999999999998 99999999999999974443
No 19
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=67.64 E-value=3.9 Score=30.69 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=22.2
Q ss_pred ChHHHHHHHHhcCc---CeEEeeCCCHHHH
Q 046740 48 SKPDVIALCYQNNI---RRMRIYDPNREAL 74 (171)
Q Consensus 48 sp~~Vv~Llks~~I---~~vRiyd~d~~vL 74 (171)
.|++|-.+|+.... +|.||||+|...+
T Consensus 2 ~pe~a~plLrrL~~Pt~~RARlyd~dG~Ll 31 (112)
T PF13756_consen 2 NPERARPLLRRLISPTRTRARLYDPDGNLL 31 (112)
T ss_pred CHHHHHHHHHHhCCCCCceEEEECCCCCEE
Confidence 47888899988754 8999999998854
No 20
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=66.15 E-value=9.3 Score=34.99 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=33.3
Q ss_pred HHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecC
Q 046740 52 VIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGL 88 (171)
Q Consensus 52 Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~v 88 (171)
..|.||..||++||+..-+|.=..+|.+-||+|.=-+
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v 374 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERV 374 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEe
Confidence 4889999999999999999999999999999997333
No 21
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=65.56 E-value=9.1 Score=36.65 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=34.0
Q ss_pred HHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCC
Q 046740 52 VIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLP 89 (171)
Q Consensus 52 Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vp 89 (171)
..|.|+..||++||+..-+|.=..+|++-||+|.=-+|
T Consensus 342 gAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 342 GAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 48899999999999999999999999999999874443
No 22
>PRK07198 hypothetical protein; Validated
Probab=65.05 E-value=5.8 Score=36.66 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=33.3
Q ss_pred HHHHHHhcCcCeE-EeeCCCHHHHHHhhCCCceEEecC
Q 046740 52 VIALCYQNNIRRM-RIYDPNREALEALRGSNIEVMLGL 88 (171)
Q Consensus 52 Vv~Llks~~I~~v-Riyd~d~~vL~Al~gsgI~v~v~v 88 (171)
-.|.|+..||++| |+...++.-..+|.|.||+|+=-+
T Consensus 337 GAQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErV 374 (418)
T PRK07198 337 MPDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERV 374 (418)
T ss_pred HHHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEe
Confidence 5789999999999 999999999999999999997444
No 23
>PRK09004 FMN-binding protein MioC; Provisional
Probab=64.96 E-value=62 Score=24.93 Aligned_cols=108 Identities=13% Similarity=0.142 Sum_probs=63.9
Q ss_pred eeeEeecCCCCCC-CChHHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCCcc---hHHHhhhChHHHHHHHHh
Q 046740 34 QIVVCYGMCGNNL-PSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNN---DLRRIASNQAESNTWVQN 109 (171)
Q Consensus 34 ~iGVnyG~~g~nL-Psp~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vpN~---~l~~lAss~~~A~~WV~~ 109 (171)
.|.|-||...-|- ==..++.+.+++.|.+ ++++|.+. +..+..... +++.++.. +.+. +-..=-+|++.
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~~~~~g~~-~~~~~~~~--~~~l~~~~~-li~~~sT~G~Ge~p~---~~~~f~~~L~~ 75 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEKLEEAGFS-TETLHGPL--LDDLSASGL-WLIVTSTHGAGDLPD---NLQPFFEELQE 75 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHcCCc-eEEeccCC--HHHhccCCe-EEEEECCCCCCCCCh---hHHHHHHHHHh
Confidence 5889999866553 3445556667777764 56666543 455655443 44555443 4442 22333346665
Q ss_pred hccccCCCceEEEEEecCCCCCCCcchhhhhHHHHHHHHHHHhCCC
Q 046740 110 NVQNFANNVKFKYIAVGNEAKPGDDFAWYLVPAMRNIQNAINGANL 155 (171)
Q Consensus 110 nV~py~p~~~I~~IaVGNEv~~~~~~~~~lvPAm~Ni~~AL~~~gL 155 (171)
. .+.+++.++--...||.- + ..-=-+++++.+.|.+.|-
T Consensus 76 ~-~~~l~g~~~aVfGlGds~-----Y-~~fc~~~~~ld~~l~~lGa 114 (146)
T PRK09004 76 Q-KPDLSQVRFAAIGIGSSE-----Y-DTFCGAIDKLEQLLKAKGA 114 (146)
T ss_pred c-CCCCCCCEEEEEeecCCC-----H-HHHhHHHHHHHHHHHHcCC
Confidence 4 334566665555556542 2 3456788999999999885
No 24
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=64.32 E-value=10 Score=34.62 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=33.9
Q ss_pred HHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCC
Q 046740 52 VIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLP 89 (171)
Q Consensus 52 Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vp 89 (171)
..|.||..||++||+...+|.=..+|.+-||+|.=-+|
T Consensus 319 gAqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 319 AFQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 38899999999999999999999999999999974443
No 25
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=63.24 E-value=11 Score=35.10 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=33.7
Q ss_pred HHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCC
Q 046740 52 VIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLP 89 (171)
Q Consensus 52 Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vp 89 (171)
-.|.||..||++||+..-+|.=..+|.+-||+|.=-+|
T Consensus 372 gAqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 372 GAQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 38899999999999999999999999999999974443
No 26
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=61.42 E-value=14 Score=31.83 Aligned_cols=36 Identities=8% Similarity=0.245 Sum_probs=30.1
Q ss_pred CChHHHHHHHHhcCcCeEEee-CCCHHHHHHhhCCCce
Q 046740 47 PSKPDVIALCYQNNIRRMRIY-DPNREALEALRGSNIE 83 (171)
Q Consensus 47 Psp~~Vv~Llks~~I~~vRiy-d~d~~vL~Al~gsgI~ 83 (171)
-.-.++++-||..|| +|-|| |||++-+++-+..|-+
T Consensus 110 ~~l~~~i~~l~~~gI-~VSLFiDP~~~qi~~A~~~GAd 146 (237)
T TIGR00559 110 DKLCELVKRFHAAGI-EVSLFIDADKDQISAAAEVGAD 146 (237)
T ss_pred HHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHhCcC
Confidence 345778999999999 78888 9999999998877754
No 27
>PRK05723 flavodoxin; Provisional
Probab=59.44 E-value=83 Score=24.54 Aligned_cols=115 Identities=7% Similarity=0.074 Sum_probs=64.2
Q ss_pred eeeEeecCCCCCC-CChHHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCCcchHHHhhhChHHHHHHHHhhcc
Q 046740 34 QIVVCYGMCGNNL-PSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQ 112 (171)
Q Consensus 34 ~iGVnyG~~g~nL-Psp~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vpN~~l~~lAss~~~A~~WV~~nV~ 112 (171)
.|+|-||...-|- =-++++.+.+++.|.+-.-+.+.+..-+..+.- . .|++.++.-.--.+..+-..--+|+++.-.
T Consensus 2 ~i~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~~~~~~~~~~~~~~~-~-~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~~ 79 (151)
T PRK05723 2 KVAILSGSVYGTAEEVARHAESLLKAAGFEAWHNPRASLQDLQAFAP-E-ALLAVTSTTGMGELPDNLMPLYSAIRDQLP 79 (151)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHCCCceeecCcCCHhHHHhCCC-C-eEEEEECCCCCCCCchhHHHHHHHHHhcCc
Confidence 4789999865442 334455556666666543334444444444422 2 234444433211121222333456776532
Q ss_pred ccCCCceEEEEEecCCCCCCCcchhhhhHHHHHHHHHHHhCCC
Q 046740 113 NFANNVKFKYIAVGNEAKPGDDFAWYLVPAMRNIQNAINGANL 155 (171)
Q Consensus 113 py~p~~~I~~IaVGNEv~~~~~~~~~lvPAm~Ni~~AL~~~gL 155 (171)
..+++.++--+..|+.- +...---|.+.++..|.+.|=
T Consensus 80 ~~l~~~~~aVfGLGDs~-----Y~~~Fc~a~~~ld~~L~~lGA 117 (151)
T PRK05723 80 AAWRGLPGAVIALGDSS-----YGDTFCGGGEQMRELFAELGV 117 (151)
T ss_pred cCCCCCEEEEEeEeCCc-----chHHHhHHHHHHHHHHHHCCC
Confidence 25677777777777653 323456789999999999885
No 28
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=59.07 E-value=16 Score=31.37 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=30.8
Q ss_pred CChHHHHHHHHhcCcCeEEee-CCCHHHHHHhhCCCceE
Q 046740 47 PSKPDVIALCYQNNIRRMRIY-DPNREALEALRGSNIEV 84 (171)
Q Consensus 47 Psp~~Vv~Llks~~I~~vRiy-d~d~~vL~Al~gsgI~v 84 (171)
-.-.++++-||+.|| +|-+| |||++-+++-+..|-+.
T Consensus 110 ~~l~~~i~~l~~~gI-~VSLFiDPd~~qi~~A~~~GAd~ 147 (234)
T cd00003 110 EKLKPIIERLKDAGI-RVSLFIDPDPEQIEAAKEVGADR 147 (234)
T ss_pred HHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHhCcCE
Confidence 445778999999999 58998 99999999988877553
No 29
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=56.98 E-value=18 Score=31.13 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=29.4
Q ss_pred CChHHHHHHHHhcCcCeEEee-CCCHHHHHHhhCCCce
Q 046740 47 PSKPDVIALCYQNNIRRMRIY-DPNREALEALRGSNIE 83 (171)
Q Consensus 47 Psp~~Vv~Llks~~I~~vRiy-d~d~~vL~Al~gsgI~ 83 (171)
-.-.++++-||..|| +|-+| |||++-+++-+..|-+
T Consensus 113 ~~l~~~i~~L~~~gI-rVSLFidP~~~qi~~A~~~GAd 149 (239)
T PRK05265 113 DKLKPAIARLKDAGI-RVSLFIDPDPEQIEAAAEVGAD 149 (239)
T ss_pred HHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHhCcC
Confidence 344678899999999 88888 9999999888877754
No 30
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=56.98 E-value=90 Score=27.70 Aligned_cols=104 Identities=18% Similarity=0.243 Sum_probs=63.0
Q ss_pred HHhcCcCeEEee-CCCHHHHHHhhCCCceEEecCCcchHHHhhhChHHHHHHHHhhcc---cc-CCCceEEEEEecCCCC
Q 046740 56 CYQNNIRRMRIY-DPNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQ---NF-ANNVKFKYIAVGNEAK 130 (171)
Q Consensus 56 lks~~I~~vRiy-d~d~~vL~Al~gsgI~v~v~vpN~~l~~lAss~~~A~~WV~~nV~---py-~p~~~I~~IaVGNEv~ 130 (171)
|.=..|+.+.+| ++|+++++.-...|++|++..... .+ ..+++..-+.|+++-|. .| +.+++|-+=-.+.+
T Consensus 51 ~~~~~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~-~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~-- 126 (358)
T cd02875 51 YDWSKVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LE-QISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITK-- 126 (358)
T ss_pred cccccceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HH-HcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCC--
Confidence 444568999999 468889987788999999864321 22 23477666667666542 22 45666654333321
Q ss_pred CCCcchhhhhHHHHHHHHHHHhCCCCCCcEEecc
Q 046740 131 PGDDFAWYLVPAMRNIQNAINGANLGSQIKVSTA 164 (171)
Q Consensus 131 ~~~~~~~~lvPAm~Ni~~AL~~~gL~~~IKVSTa 164 (171)
..+....+..=|+.++++|.+.|.+-.+-|++|
T Consensus 127 -~~~d~~~~t~llkelr~~l~~~~~~~~Lsvav~ 159 (358)
T cd02875 127 -GSPEYYALTELVKETTKAFKKENPGYQISFDVA 159 (358)
T ss_pred -CcchHHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Confidence 111233456678889999998865433444333
No 31
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=56.21 E-value=54 Score=22.43 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=40.2
Q ss_pred ChHHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCCcchHHH
Q 046740 48 SKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRR 95 (171)
Q Consensus 48 sp~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vpN~~l~~ 95 (171)
.+...++++..++++-+=.-.--+...+.|+..||+|+.+ +..++..
T Consensus 41 ~~~~~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~-~~~~i~~ 87 (94)
T PF02579_consen 41 GGDKIAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQG-AGGDIEE 87 (94)
T ss_dssp HSTHHHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEES-TSSBHHH
T ss_pred cchhHHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEc-CCCCHHH
Confidence 4567889999999999988889999999999999999999 5566653
No 32
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=53.61 E-value=20 Score=30.86 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=28.0
Q ss_pred CCChHHHHHHHHhcCcCeEEee-CCCHHHHHHhhCCCceE
Q 046740 46 LPSKPDVIALCYQNNIRRMRIY-DPNREALEALRGSNIEV 84 (171)
Q Consensus 46 LPsp~~Vv~Llks~~I~~vRiy-d~d~~vL~Al~gsgI~v 84 (171)
...-.++++-||+.|| +|-+| |||++-+++-+..|-+.
T Consensus 110 ~~~l~~~i~~L~~~gI-rvSLFiDP~~~qi~~A~~~Gad~ 148 (239)
T PF03740_consen 110 RDRLKPVIKRLKDAGI-RVSLFIDPDPEQIEAAKELGADR 148 (239)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEE-S-HHHHHHHHHTT-SE
T ss_pred HHHHHHHHHHHHhCCC-EEEEEeCCCHHHHHHHHHcCCCE
Confidence 3455788999999999 88888 99999999988887653
No 33
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=52.26 E-value=29 Score=25.91 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCcCeEEeeC--C---CHHHHHHhhCCCceEE
Q 046740 50 PDVIALCYQNNIRRMRIYD--P---NREALEALRGSNIEVM 85 (171)
Q Consensus 50 ~~Vv~Llks~~I~~vRiyd--~---d~~vL~Al~gsgI~v~ 85 (171)
+++.+.+++.||..++++- + ...+|++|+.+|+++.
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~ 90 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVT 90 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 3456677889999999983 3 3348999999999864
No 34
>cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the second of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=52.05 E-value=26 Score=26.23 Aligned_cols=29 Identities=7% Similarity=0.131 Sum_probs=23.9
Q ss_pred chhhhhHHHHHHHHHHHhCCCCCCcEEec
Q 046740 135 FAWYLVPAMRNIQNAINGANLGSQIKVST 163 (171)
Q Consensus 135 ~~~~lvPAm~Ni~~AL~~~gL~~~IKVST 163 (171)
+..+.--+|+||...|+++|.++-+|+++
T Consensus 31 ~~~Q~~qal~Ni~~vL~~aG~~dVvk~~i 59 (118)
T cd06156 31 ITLQAVLSLQHLERVAKAMNVQWVLAAVC 59 (118)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 56688899999999999999955467763
No 35
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=51.79 E-value=80 Score=32.26 Aligned_cols=95 Identities=18% Similarity=0.118 Sum_probs=61.9
Q ss_pred eeEeecC----CCCCCCChH---HHHHHHHhcCcCeEEee--CCCHHHHHHhhCCCceEEecCCcch--------HHHhh
Q 046740 35 IVVCYGM----CGNNLPSKP---DVIALCYQNNIRRMRIY--DPNREALEALRGSNIEVMLGLPNND--------LRRIA 97 (171)
Q Consensus 35 iGVnyG~----~g~nLPsp~---~Vv~Llks~~I~~vRiy--d~d~~vL~Al~gsgI~v~v~vpN~~--------l~~lA 97 (171)
-|||+.. .|.-. +++ +-++++|+.|+..||.. -+++..++.+-.-||=|+-..+-+. ...+.
T Consensus 337 rGvnrh~~~p~~G~a~-~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAV-GMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEeecCCCCcccCccC-CHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 4888642 33322 332 34678999999999975 3567789999999999988764110 11222
Q ss_pred hChH---HHHHHHHhhccccCCCceEEEEEecCCCC
Q 046740 98 SNQA---ESNTWVQNNVQNFANNVKFKYIAVGNEAK 130 (171)
Q Consensus 98 ss~~---~A~~WV~~nV~py~p~~~I~~IaVGNEv~ 130 (171)
.++. ...+-+++.|..+...-.|-.=..|||.-
T Consensus 416 ~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 416 DDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 3332 22344677788776666777778899974
No 36
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=51.69 E-value=70 Score=32.77 Aligned_cols=95 Identities=18% Similarity=0.073 Sum_probs=62.3
Q ss_pred eeEeecC----CCCCCCChH---HHHHHHHhcCcCeEEee--CCCHHHHHHhhCCCceEEecCCcch-----HHHhhhCh
Q 046740 35 IVVCYGM----CGNNLPSKP---DVIALCYQNNIRRMRIY--DPNREALEALRGSNIEVMLGLPNND-----LRRIASNQ 100 (171)
Q Consensus 35 iGVnyG~----~g~nLPsp~---~Vv~Llks~~I~~vRiy--d~d~~vL~Al~gsgI~v~v~vpN~~-----l~~lAss~ 100 (171)
-|||+.. .|.- .+++ +-++++|+.|++.||.. -++|..++.+-.-||=|+-..+-+. ...++.++
T Consensus 353 rGvn~h~~~p~~G~a-~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 353 RGVNRHEHHPEHGQV-MDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEeEccccCcccCcc-CCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 3888742 2322 3343 35678899999999984 4578899999999999988865321 11123333
Q ss_pred HH---HHHHHHhhccccCCCceEEEEEecCCCC
Q 046740 101 AE---SNTWVQNNVQNFANNVKFKYIAVGNEAK 130 (171)
Q Consensus 101 ~~---A~~WV~~nV~py~p~~~I~~IaVGNEv~ 130 (171)
.. ..+-+++.|......-.|-.=.+|||.-
T Consensus 432 ~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 32 2333456677776666777788899964
No 37
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=51.06 E-value=27 Score=29.12 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=35.0
Q ss_pred HHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCCc
Q 046740 52 VIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPN 90 (171)
Q Consensus 52 Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vpN 90 (171)
-.|+||..||++||+-.-+|.=..++.+-||+|.=.+|.
T Consensus 132 gAqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~ 170 (193)
T COG0807 132 GAQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPL 170 (193)
T ss_pred HHHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeec
Confidence 468999999999999999999999999999999877764
No 38
>PF05336 DUF718: Domain of unknown function (DUF718); InterPro: IPR008000 Mutarotases are enzymes which interconvert the alpha and beta stereoisomers of monosaccharides, enhancing the rate of their metabolism. Proteins in this entry are homologues of the rhamnose mutarotase YiiL (P32156 from SWISSPROT) from Escherichia coli, and are often encoded in rhamnose utilisation operons. YiiL is an enzyme which interconverts the alpha and beta stereoisomers of the pyranose form of L-rhamnose []. It is not required for growth on rhamnose, but allows cells to utilise this carbon source more efficiently [].The structure of YiiL is distinct from other mutarotases, forming an asymmetric dimmer stabilised by an intermolecular beta-sheet, hydrophobic interactions and a salt bridge [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0019299 rhamnose metabolic process, 0005737 cytoplasm; PDB: 2QLX_A 2QLW_B 1X8D_B.
Probab=49.78 E-value=14 Score=27.41 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=35.7
Q ss_pred ChHHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceE-EecC--CcchHHHhhhChHHHHHHHH
Q 046740 48 SKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEV-MLGL--PNNDLRRIASNQAESNTWVQ 108 (171)
Q Consensus 48 sp~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v-~v~v--pN~~l~~lAss~~~A~~WV~ 108 (171)
-+.+|.+.++..||..+.||-... +|.-+ .+.+ .......++.+|...+-|=.
T Consensus 24 vWPEv~~~l~~~Gi~~ysIf~~g~--------~~~LF~~~E~~~~~~~~~~l~~~p~~~~W~~~ 79 (106)
T PF05336_consen 24 VWPEVLAALREAGIRNYSIFRDGD--------TGRLFMYMETDDFDADMAALAADPVVQRWWAY 79 (106)
T ss_dssp --HHHHHHHHHCTEEEEEEEEETT--------TTEEEEEEEECT-CHHHHHGGGSHHHHHHHHH
T ss_pred cCHHHHHHHHHCCCeEEEEEEeCC--------CCEEEEEEEecChhhHHHHccCChHHHHHHHH
Confidence 467999999999999999995432 12222 1222 24678889999988877744
No 39
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=48.75 E-value=32 Score=26.34 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=28.9
Q ss_pred hHHHHHHHHhcCcCeEEeeC----------CCH---HHHHHhhCCCceEE
Q 046740 49 KPDVIALCYQNNIRRMRIYD----------PNR---EALEALRGSNIEVM 85 (171)
Q Consensus 49 p~~Vv~Llks~~I~~vRiyd----------~d~---~vL~Al~gsgI~v~ 85 (171)
.+++.+..++.||+.++++= |.| ..|++|+.+|+++.
T Consensus 52 a~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 52 AGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 36678888899999888873 333 38999999999974
No 40
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=48.71 E-value=51 Score=25.40 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=42.4
Q ss_pred CCCCCh--HHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCCcchHH
Q 046740 44 NNLPSK--PDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLR 94 (171)
Q Consensus 44 ~nLPsp--~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vpN~~l~ 94 (171)
.+.|.+ ..+.++++.+|++-+=...--|..+++|+.-||+|..+-+ ..+.
T Consensus 47 ~~~~~g~G~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~-~~V~ 98 (121)
T COG1433 47 ASAEKGAGIRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG-GTVE 98 (121)
T ss_pred ccccCcchHHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC-CCHH
Confidence 345544 4689999999999999999999999999999999999987 4444
No 41
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=48.46 E-value=32 Score=27.55 Aligned_cols=43 Identities=26% Similarity=0.433 Sum_probs=33.2
Q ss_pred HHHHHhcCcCeEEee--CCCHHH----HHHhhCCCceEEecCCcchHHH
Q 046740 53 IALCYQNNIRRMRIY--DPNREA----LEALRGSNIEVMLGLPNNDLRR 95 (171)
Q Consensus 53 v~Llks~~I~~vRiy--d~d~~v----L~Al~gsgI~v~v~vpN~~l~~ 95 (171)
+++|-..||.||=+= ||||.+ +.-|+..||+|.+++..++-..
T Consensus 88 ~~ali~agi~rVvva~~DPnp~Vag~G~~~L~~aGi~V~~gil~~e~~~ 136 (146)
T COG0117 88 ADALIKAGVARVVVAMLDPNPLVAGGGLARLRAAGIEVEVGILEEEAEK 136 (146)
T ss_pred HHHHHHhCCCEEEEEecCCCccccCchHHHHHHcCCeEEEehhHHHHHH
Confidence 456667789998765 777655 7778889999999998777654
No 42
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=46.79 E-value=27 Score=33.42 Aligned_cols=80 Identities=19% Similarity=0.305 Sum_probs=53.0
Q ss_pred eeeEeecCCCCCCCChHHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCCcch--HHHh----------hhChH
Q 046740 34 QIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNND--LRRI----------ASNQA 101 (171)
Q Consensus 34 ~iGVnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vpN~~--l~~l----------Ass~~ 101 (171)
.|=+.||+.| ..+.+.|+++|++ +.+-|.|++..+.++.-|.++..|=+.+. +... +.+-.
T Consensus 403 vII~G~Gr~G------~~va~~L~~~g~~-vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~ 475 (621)
T PRK03562 403 VIIAGFGRFG------QIVGRLLLSSGVK-MTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDP 475 (621)
T ss_pred EEEEecChHH------HHHHHHHHhCCCC-EEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCH
Confidence 4557788887 6688999999985 66779999999988888998887754332 2211 11222
Q ss_pred HHHHHHHhhccccCCCceE
Q 046740 102 ESNTWVQNNVQNFANNVKF 120 (171)
Q Consensus 102 ~A~~WV~~nV~py~p~~~I 120 (171)
..+.=+-..+..++|+.+|
T Consensus 476 ~~n~~i~~~ar~~~p~~~i 494 (621)
T PRK03562 476 QTSLQLVELVKEHFPHLQI 494 (621)
T ss_pred HHHHHHHHHHHHhCCCCeE
Confidence 3333344455666787765
No 43
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=46.41 E-value=1.1e+02 Score=28.13 Aligned_cols=92 Identities=17% Similarity=0.314 Sum_probs=49.7
Q ss_pred eeEeecCCCCCCCChHHHHHHHHh----cCcCeEEeeCCCH-----HHHHHhhCCC---ceEEecC--C-cchHHHhhhC
Q 046740 35 IVVCYGMCGNNLPSKPDVIALCYQ----NNIRRMRIYDPNR-----EALEALRGSN---IEVMLGL--P-NNDLRRIASN 99 (171)
Q Consensus 35 iGVnyG~~g~nLPsp~~Vv~Llks----~~I~~vRiyd~d~-----~vL~Al~gsg---I~v~v~v--p-N~~l~~lAss 99 (171)
.|.+.+..|.++|......+|++. .++.++|++..+| +++++++..+ -.+.+++ . ++.+..+...
T Consensus 207 ~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~ 286 (459)
T PRK14338 207 LGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRG 286 (459)
T ss_pred eeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhccCC
Confidence 455555555566655556666654 3677889875544 6889998744 2344444 3 3446666432
Q ss_pred hHHHHHHHH--hhccccCCCceEE-EEEecC
Q 046740 100 QAESNTWVQ--NNVQNFANNVKFK-YIAVGN 127 (171)
Q Consensus 100 ~~~A~~WV~--~nV~py~p~~~I~-~IaVGN 127 (171)
. ..+.|.+ ..+....|+..+. ++.+|-
T Consensus 287 ~-t~e~~~~~i~~lr~~~pgi~i~~d~IvG~ 316 (459)
T PRK14338 287 Y-TVARYRELIARIREAIPDVSLTTDIIVGH 316 (459)
T ss_pred C-CHHHHHHHHHHHHHhCCCCEEEEEEEEEC
Confidence 1 1222221 2233345777765 577783
No 44
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=45.66 E-value=68 Score=29.30 Aligned_cols=109 Identities=17% Similarity=0.292 Sum_probs=67.8
Q ss_pred hHHHHHHHHhcCcCeEEee--CCCHHHHHH---------------------hhCCCceEEecCCcchHHHhhhChHHHHH
Q 046740 49 KPDVIALCYQNNIRRMRIY--DPNREALEA---------------------LRGSNIEVMLGLPNNDLRRIASNQAESNT 105 (171)
Q Consensus 49 p~~Vv~Llks~~I~~vRiy--d~d~~vL~A---------------------l~gsgI~v~v~vpN~~l~~lAss~~~A~~ 105 (171)
-.+-.+.|+..||+|+-+- +-|+++|++ +.+-+++++-|.|.+.++++..+...|.+
T Consensus 136 ~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a~~ 215 (416)
T COG0635 136 EAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQALE 215 (416)
T ss_pred CHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHh
Confidence 4677889999999988765 444444432 33456789999999999999887777776
Q ss_pred HHHhhcccc----CCCceEEEEEe-cCCCCCCCcchhhhhHHHHHHHHHHHhCCCCCCcEEe
Q 046740 106 WVQNNVQNF----ANNVKFKYIAV-GNEAKPGDDFAWYLVPAMRNIQNAINGANLGSQIKVS 162 (171)
Q Consensus 106 WV~~nV~py----~p~~~I~~IaV-GNEv~~~~~~~~~lvPAm~Ni~~AL~~~gL~~~IKVS 162 (171)
-=-++|..| .|++++--... |. .++.. ....-=++-++.-|.++|.. ++-+|
T Consensus 216 l~pdhis~y~L~~~p~t~~~~~~~~~~-~lP~~---d~~~~~~~~~~e~L~~~Gy~-~yeis 272 (416)
T COG0635 216 LGPDHLSLYSLAIEPGTKFAQRKIKGK-ALPDE---DEKADMYELVEELLEKAGYR-QYEIS 272 (416)
T ss_pred CCCCEEEEeeeecCCCchhhhhcccCC-CCcCh---HHHHHHHHHHHHHHHHCCCc-EEeec
Confidence 545555544 34444321111 22 22221 12233345678889999984 46554
No 45
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=44.33 E-value=46 Score=26.72 Aligned_cols=38 Identities=29% Similarity=0.387 Sum_probs=30.0
Q ss_pred hHHHHHHHHhcCcCeEEeeC------------CCHH-HHHHhhCCCceEEe
Q 046740 49 KPDVIALCYQNNIRRMRIYD------------PNRE-ALEALRGSNIEVML 86 (171)
Q Consensus 49 p~~Vv~Llks~~I~~vRiyd------------~d~~-vL~Al~gsgI~v~v 86 (171)
++++.+..+..||+.++++= |..+ .|++|+.+|+++..
T Consensus 78 a~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~ 128 (149)
T PTZ00129 78 AQDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGR 128 (149)
T ss_pred HHHHHHHHHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEE
Confidence 45677788899999988886 4333 79999999999853
No 46
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=40.91 E-value=78 Score=21.99 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=37.3
Q ss_pred hHHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCCcchHH
Q 046740 49 KPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLR 94 (171)
Q Consensus 49 p~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vpN~~l~ 94 (171)
+..+++++++.+++-+=.=.--+..++.|+..||++..+.. ..+.
T Consensus 52 ~~~~~~~l~~~~v~~vi~~~iG~~~~~~l~~~gI~v~~~~~-~~i~ 96 (103)
T cd00851 52 GGKAAEFLADEGVDVVIVGGIGPRALNKLRNAGIKVYKGAE-GTVE 96 (103)
T ss_pred chHHHHHHHHcCCCEEEeCCCCcCHHHHHHHCCCEEEEcCC-CCHH
Confidence 47889999999988887767778899999999999998876 4444
No 47
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=40.12 E-value=37 Score=32.27 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=37.3
Q ss_pred EeecCCCCCCCChHHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCC
Q 046740 37 VCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLP 89 (171)
Q Consensus 37 VnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vp 89 (171)
+-||+.| ..+.+.++++|++ +-+-|.||+..+.++.-|.+++.|=+
T Consensus 406 ~G~Gr~G------~~va~~L~~~g~~-vvvID~d~~~v~~~~~~g~~v~~GDa 451 (601)
T PRK03659 406 VGFGRFG------QVIGRLLMANKMR-ITVLERDISAVNLMRKYGYKVYYGDA 451 (601)
T ss_pred ecCchHH------HHHHHHHHhCCCC-EEEEECCHHHHHHHHhCCCeEEEeeC
Confidence 5577776 6788999999986 56669999999999988988888754
No 48
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=40.05 E-value=34 Score=29.65 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=43.9
Q ss_pred CCCCC--ChHHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCCcchHHHhhhChHHHHHHHHhhccccCCCceE
Q 046740 43 GNNLP--SKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQNFANNVKF 120 (171)
Q Consensus 43 g~nLP--sp~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vpN~~l~~lAss~~~A~~WV~~nV~py~p~~~I 120 (171)
-..|+ -..|++.||.++||..-|.=+-| .|.. +.|+.+|+ ..|-+|+++|=.|.-+.+++
T Consensus 25 y~gL~e~eANemlAlL~~~gI~A~K~~~~~---------g~~~--l~Ve~~~f-------a~Av~iL~~~GlPr~~f~~l 86 (246)
T COG4669 25 YTGLSEKEANEMLALLMSHGINAEKKADKD---------GGTS--LLVEESDF-------AEAVEILNQNGLPRKKFTTL 86 (246)
T ss_pred HcCCCHhHHHHHHHHHHHcCCcceeeccCC---------CceE--EEEcHHHH-------HHHHHHHHhcCCCCCCCCcH
Confidence 34455 46789999999999999973222 2222 55666555 67899999999998777766
Q ss_pred E
Q 046740 121 K 121 (171)
Q Consensus 121 ~ 121 (171)
.
T Consensus 87 ~ 87 (246)
T COG4669 87 G 87 (246)
T ss_pred H
Confidence 4
No 49
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=40.04 E-value=48 Score=28.61 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=32.1
Q ss_pred CCCChHHHHHHHHhcCcCeEEee-CCCHHHHHHhhCCCceE
Q 046740 45 NLPSKPDVIALCYQNNIRRMRIY-DPNREALEALRGSNIEV 84 (171)
Q Consensus 45 nLPsp~~Vv~Llks~~I~~vRiy-d~d~~vL~Al~gsgI~v 84 (171)
..+--.++++-||..|| +|-+| |||++-+++-+.+|-+.
T Consensus 109 ~~~~l~~~v~~L~~~Gi-rVSLFiD~d~~qi~aa~~~gA~~ 148 (243)
T COG0854 109 QLDKLRDAVRRLKNAGI-RVSLFIDPDPEQIEAAAEVGAPR 148 (243)
T ss_pred hhhhHHHHHHHHHhCCC-eEEEEeCCCHHHHHHHHHhCCCE
Confidence 34566789999999998 57777 99999999999888554
No 50
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=39.40 E-value=95 Score=28.73 Aligned_cols=72 Identities=17% Similarity=0.354 Sum_probs=47.8
Q ss_pred eeEeecC--CCCCCCChHHHHHHHHhcCcCeEEe--eCCCHHH----------------HHHhhCCCc----eEEecCCc
Q 046740 35 IVVCYGM--CGNNLPSKPDVIALCYQNNIRRMRI--YDPNREA----------------LEALRGSNI----EVMLGLPN 90 (171)
Q Consensus 35 iGVnyG~--~g~nLPsp~~Vv~Llks~~I~~vRi--yd~d~~v----------------L~Al~gsgI----~v~v~vpN 90 (171)
+++.|+. ..+++-.-++..+++++.|+.+|-+ =..++++ ++.++..|| .+++|.|+
T Consensus 270 l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~ 349 (497)
T TIGR02026 270 ISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFEN 349 (497)
T ss_pred CCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 4565553 2355544467889999999887766 2334433 445556677 56889999
Q ss_pred chHHHhhhChHHHHHH
Q 046740 91 NDLRRIASNQAESNTW 106 (171)
Q Consensus 91 ~~l~~lAss~~~A~~W 106 (171)
|..+++......+.+|
T Consensus 350 et~e~~~~t~~~~~~l 365 (497)
T TIGR02026 350 ETDETFEETYRQLLDW 365 (497)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9888887666666655
No 51
>CHL00041 rps11 ribosomal protein S11
Probab=38.85 E-value=77 Score=23.99 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=26.2
Q ss_pred HHHHHHHhcCcCeEEeeC----CCH-HHHHHhhCCCceEE
Q 046740 51 DVIALCYQNNIRRMRIYD----PNR-EALEALRGSNIEVM 85 (171)
Q Consensus 51 ~Vv~Llks~~I~~vRiyd----~d~-~vL~Al~gsgI~v~ 85 (171)
++.+..++.|++.++++- +.. .++++|+..|+++.
T Consensus 64 ~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 64 NAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 455677788999998883 333 37999999999874
No 52
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=38.77 E-value=20 Score=26.34 Aligned_cols=30 Identities=33% Similarity=0.509 Sum_probs=25.3
Q ss_pred CCHHHHHHhhCCCceEEecCCcchHHHhhh
Q 046740 69 PNREALEALRGSNIEVMLGLPNNDLRRIAS 98 (171)
Q Consensus 69 ~d~~vL~Al~gsgI~v~v~vpN~~l~~lAs 98 (171)
.=.++++|+++-+.||+++++.++.+.+..
T Consensus 62 ~l~~ll~ala~ldvEvV~a~~~~~~~~lg~ 91 (97)
T PF06722_consen 62 LLRRLLEALAGLDVEVVVALPAAQRAELGE 91 (97)
T ss_dssp HHHHHHHHHHTSSSEEEEEETTCCCGGCCS
T ss_pred HHHHHHHHHhhCCcEEEEECCHHHHHhhCC
Confidence 335789999999999999999988877643
No 53
>PRK05309 30S ribosomal protein S11; Validated
Probab=38.70 E-value=63 Score=24.96 Aligned_cols=36 Identities=17% Similarity=0.382 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCcCeEEeeC----CC-HHHHHHhhCCCceEE
Q 046740 50 PDVIALCYQNNIRRMRIYD----PN-REALEALRGSNIEVM 85 (171)
Q Consensus 50 ~~Vv~Llks~~I~~vRiyd----~d-~~vL~Al~gsgI~v~ 85 (171)
+.+.+..++.||+.++++- +. ..+|++|+.+|+++.
T Consensus 67 ~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 67 EDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 4456677889999999983 22 338999999999864
No 54
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=37.69 E-value=1.3e+02 Score=27.35 Aligned_cols=92 Identities=17% Similarity=0.290 Sum_probs=50.2
Q ss_pred eeEeecCCCCCCCChHHHHHHHHh----cCcCeEEeeC-----CCHHHHHHhhCCC---ceEEecC---CcchHHHhhhC
Q 046740 35 IVVCYGMCGNNLPSKPDVIALCYQ----NNIRRMRIYD-----PNREALEALRGSN---IEVMLGL---PNNDLRRIASN 99 (171)
Q Consensus 35 iGVnyG~~g~nLPsp~~Vv~Llks----~~I~~vRiyd-----~d~~vL~Al~gsg---I~v~v~v---pN~~l~~lAss 99 (171)
+|.+.+..|.+++...+..+|++. .++.++|+.- -+++++++++..+ ..+.+++ .++.|..+...
T Consensus 199 ~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~ 278 (439)
T PRK14328 199 LGQNVNSYGKDLEEKIDFADLLRRVNEIDGLERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMNRH 278 (439)
T ss_pred eccccCcCCcCCCCCcCHHHHHHHHHhcCCCcEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCCCC
Confidence 466655555555543345566653 3567899764 2557999998775 2445554 23345556432
Q ss_pred hHHHHHHHHh--hccccCCCceEE-EEEecC
Q 046740 100 QAESNTWVQN--NVQNFANNVKFK-YIAVGN 127 (171)
Q Consensus 100 ~~~A~~WV~~--nV~py~p~~~I~-~IaVGN 127 (171)
.+ .+.|.+. .+....|+..|. .+.+|-
T Consensus 279 ~~-~~~~~~~i~~lr~~~~~i~i~~d~IvG~ 308 (439)
T PRK14328 279 YT-REYYLELVEKIKSNIPDVAITTDIIVGF 308 (439)
T ss_pred CC-HHHHHHHHHHHHHhCCCCEEEEEEEEEC
Confidence 22 2233322 233335666654 678884
No 55
>PRK09989 hypothetical protein; Provisional
Probab=37.55 E-value=78 Score=26.07 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=40.8
Q ss_pred eeEeecCCCCCCCChHHHHHHHHhcCcCeEEe---eCCC-HHHHHHhhCCCceEEe
Q 046740 35 IVVCYGMCGNNLPSKPDVIALCYQNNIRRMRI---YDPN-REALEALRGSNIEVML 86 (171)
Q Consensus 35 iGVnyG~~g~nLPsp~~Vv~Llks~~I~~vRi---yd~d-~~vL~Al~gsgI~v~v 86 (171)
..+|..++-..+| -.+.++..++.|++.|-+ ++-+ .++.+.++..|+++..
T Consensus 4 ~~~~~~~~~~~~~-l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 4 FAANLSMMFTEVP-FIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred eeeehhhhhcCCC-HHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 4689999888875 568899999999999998 3333 3467788899999986
No 56
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=35.54 E-value=84 Score=22.44 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=23.6
Q ss_pred HHHHHhcCcCeEEeeCCC--HHHHHHhhC-CCceEEecCCc
Q 046740 53 IALCYQNNIRRMRIYDPN--REALEALRG-SNIEVMLGLPN 90 (171)
Q Consensus 53 v~Llks~~I~~vRiyd~d--~~vL~Al~g-sgI~v~v~vpN 90 (171)
.+++|+.|.+.+=-|+.+ .+-++.+.+ .|+++++....
T Consensus 27 ~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g 67 (130)
T PF00107_consen 27 LELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG 67 (130)
T ss_dssp HHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS
T ss_pred HHHHHhhcccccccccccccccccccccccccceEEEEecC
Confidence 578888888877554333 224444443 48888877654
No 57
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=35.46 E-value=67 Score=25.23 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=28.9
Q ss_pred hHHHHHHHHhcCcCeEEeeC----------CCHH---HHHHhhCCCceEE
Q 046740 49 KPDVIALCYQNNIRRMRIYD----------PNRE---ALEALRGSNIEVM 85 (171)
Q Consensus 49 p~~Vv~Llks~~I~~vRiyd----------~d~~---vL~Al~gsgI~v~ 85 (171)
.+++.+..+..||+.|+++= |.|. .|++|+.+|+++.
T Consensus 59 ae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~ 108 (132)
T PRK09607 59 AEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 108 (132)
T ss_pred HHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEE
Confidence 35677888899999988873 3333 8999999999974
No 58
>PTZ00090 40S ribosomal protein S11; Provisional
Probab=34.98 E-value=70 Score=27.48 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=28.2
Q ss_pred HHHHHHHhcCcCeEEee----CCCHHHHHHhhCCCceEEe
Q 046740 51 DVIALCYQNNIRRMRIY----DPNREALEALRGSNIEVML 86 (171)
Q Consensus 51 ~Vv~Llks~~I~~vRiy----d~d~~vL~Al~gsgI~v~v 86 (171)
.+++-.++.||.+|+++ .....+|+||..+|++|..
T Consensus 171 ~aakka~~~GIk~V~V~vKGpGgREtALRaL~~~GLkIt~ 210 (233)
T PTZ00090 171 NIAKKCRRLGIFAVDIKFRRIMRVETVLQAFYANGLQVTQ 210 (233)
T ss_pred HHHHHHHHcCCeEEEEEEeCCChHHHHHHHHHHCCCEEEE
Confidence 35566678999999998 3445589999999999854
No 59
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=34.92 E-value=71 Score=23.78 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=25.4
Q ss_pred HHHHHHHhcCcCeEEee----CCCH-HHHHHhhCCCceEE
Q 046740 51 DVIALCYQNNIRRMRIY----DPNR-EALEALRGSNIEVM 85 (171)
Q Consensus 51 ~Vv~Llks~~I~~vRiy----d~d~-~vL~Al~gsgI~v~ 85 (171)
.+.+.++..||+.|+++ .+.. .++++|+.+|+++.
T Consensus 51 ~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~ 90 (110)
T PF00411_consen 51 KIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIV 90 (110)
T ss_dssp HHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEE
Confidence 44456677899988887 3333 48999998998864
No 60
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=34.76 E-value=69 Score=23.10 Aligned_cols=61 Identities=13% Similarity=0.254 Sum_probs=41.5
Q ss_pred CCC-CCChHHHHHHHHhcCcCeEEeeCCC----HHHHHHhhCCCceEEecCCcchHHHhhhChHHHHHHHHhh
Q 046740 43 GNN-LPSKPDVIALCYQNNIRRMRIYDPN----REALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNN 110 (171)
Q Consensus 43 g~n-LPsp~~Vv~Llks~~I~~vRiyd~d----~~vL~Al~gsgI~v~v~vpN~~l~~lAss~~~A~~WV~~n 110 (171)
|+. +|...+.++.++++|++-+=+-+.. .+..+-|+.-|+++ .. ..+-++...+..|++++
T Consensus 12 g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~----~~---~~i~ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 12 GNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPV----DE---DEIITSGMAAAEYLKEH 77 (101)
T ss_dssp TTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT------G---GGEEEHHHHHHHHHHHH
T ss_pred CCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCC----Cc---CEEEChHHHHHHHHHhc
Confidence 444 7999999999999985444443322 45788888889885 22 33446678899999996
No 61
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=34.61 E-value=98 Score=21.84 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCC
Q 046740 50 PDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLP 89 (171)
Q Consensus 50 ~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vp 89 (171)
.++++.|++.+ .++.+.|.|++..+.++..|.+++.|=+
T Consensus 11 ~~i~~~L~~~~-~~vvvid~d~~~~~~~~~~~~~~i~gd~ 49 (116)
T PF02254_consen 11 REIAEQLKEGG-IDVVVIDRDPERVEELREEGVEVIYGDA 49 (116)
T ss_dssp HHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTSEEEES-T
T ss_pred HHHHHHHHhCC-CEEEEEECCcHHHHHHHhcccccccccc
Confidence 67888888844 7899999999999999999988887744
No 62
>TIGR02625 YiiL_rotase L-rhamnose 1-epimerase. Members of this protein family are rhamnose mutarotase from Escherichia coli, previously designated YiiL as an uncharacterized protein, and close homologs also associated with rhamnose dissimilation operons in other bacterial genomes. Mutarotase is a term for an epimerase that changes optical activity. This enzyme was shown experimentally to interconvert alpha and beta stereoisomers of the pyranose form of L-rhamnose. The crystal structure of this small (104 amino acid) protein shows a locally asymmetric dimer with active site residues of His, Tyr, and Trp.
Probab=34.18 E-value=40 Score=25.11 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=32.0
Q ss_pred hHHHHHHHHhcCcCeEEeeC-CCHHHHHHhhCCCceEEecCCcchHHHhhhChHHHHHH
Q 046740 49 KPDVIALCYQNNIRRMRIYD-PNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTW 106 (171)
Q Consensus 49 p~~Vv~Llks~~I~~vRiyd-~d~~vL~Al~gsgI~v~v~vpN~~l~~lAss~~~A~~W 106 (171)
+.++.+.||+.||..+.||- ++.+.|=+.- -.-.+.+...+|.++...+.|
T Consensus 24 WPEv~~~L~~~Gi~~ysIfl~~~~~~LF~~~-------E~~d~~~~~~~a~~~~~~~W~ 75 (102)
T TIGR02625 24 WPELKEVLKSHGAHNYSIFLDKQRNLLFAYV-------EIEDEERWNAIAETDICQKWW 75 (102)
T ss_pred CHHHHHHHHHCCCeEEEEEEECCCCeEEEEE-------EECchhcHHHhhCCHHHHHHH
Confidence 46899999999999999993 2222222211 011234567788777665444
No 63
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=34.15 E-value=1e+02 Score=23.25 Aligned_cols=55 Identities=15% Similarity=0.297 Sum_probs=41.1
Q ss_pred CCCCCChHHHHHHHHhcCcCeEEee----------CCCHHHHHHhhCCCceEEecCC----cchHHHhh
Q 046740 43 GNNLPSKPDVIALCYQNNIRRMRIY----------DPNREALEALRGSNIEVMLGLP----NNDLRRIA 97 (171)
Q Consensus 43 g~nLPsp~~Vv~Llks~~I~~vRiy----------d~d~~vL~Al~gsgI~v~v~vp----N~~l~~lA 97 (171)
|-+-|+++++++-+...|+++|-+- +-=+..+..+++.+.++.+|-| .+++..++
T Consensus 52 ~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~~~~~~~~~i~~g~pLl~~~~d~~~v~ 120 (127)
T cd03412 52 GIEVDTPEEALAKLAADGYTEVIVQSLHIIPGEEYEKLKREVDAFKKGFKKIKLGRPLLYSPEDYEEVA 120 (127)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEEeCeeECcHHHHHHHHHHHHHhCCCceEEEccCCCCCHHHHHHHH
Confidence 4568999999999999999998763 2223467777777888888877 55555554
No 64
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.98 E-value=2.7e+02 Score=25.19 Aligned_cols=88 Identities=16% Similarity=0.246 Sum_probs=49.3
Q ss_pred eeEeecCCCCCCCChHHHHHHHHh----cCcCeEEeeCC-----CHHHHHHhhCCC---ceEEecCC---cchHHHhhhC
Q 046740 35 IVVCYGMCGNNLPSKPDVIALCYQ----NNIRRMRIYDP-----NREALEALRGSN---IEVMLGLP---NNDLRRIASN 99 (171)
Q Consensus 35 iGVnyG~~g~nLPsp~~Vv~Llks----~~I~~vRiyd~-----d~~vL~Al~gsg---I~v~v~vp---N~~l~~lAss 99 (171)
+|.|.+..|.+++......+|++. .++.++|+... +++.++.++..+ -.+.+++- ++.|..+-..
T Consensus 176 ~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~ 255 (418)
T PRK14336 176 LGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMRRG 255 (418)
T ss_pred EecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhCCC
Confidence 566755555555433445555543 35678998643 466888888754 35556662 3346556332
Q ss_pred -----hHHHHHHHHhhccccCCCceEE-EEEec
Q 046740 100 -----QAESNTWVQNNVQNFANNVKFK-YIAVG 126 (171)
Q Consensus 100 -----~~~A~~WV~~nV~py~p~~~I~-~IaVG 126 (171)
...+-.++++ +.|+..+. .+.||
T Consensus 256 ~~~~~~~~~i~~lr~----~~pgi~i~~d~IvG 284 (418)
T PRK14336 256 YTNQQYRELVERLKT----AMPDISLQTDLIVG 284 (418)
T ss_pred CCHHHHHHHHHHHHh----hCCCCEEEEEEEEE
Confidence 2233334443 35776664 67888
No 65
>PF07985 SRR1: SRR1; InterPro: IPR012942 Sensitivity To Red Light Reduced proteins (SRR1) are signalling proteins thought to be involved in regulating the circadian clock input pathway, which is required for normal oscillator function. In Arabidopsis thaliana it regulates the expression of clock-regulated genes such as CCA1 and TOC1. It is also involved in both the phytochrome B (PHYB) and PHYB-independent signaling pathways [].
Probab=32.59 E-value=73 Score=20.95 Aligned_cols=34 Identities=26% Similarity=0.522 Sum_probs=20.2
Q ss_pred EeecC--CCCCCCChHHHHHHH---HhcCc--CeEEeeCCC
Q 046740 37 VCYGM--CGNNLPSKPDVIALC---YQNNI--RRMRIYDPN 70 (171)
Q Consensus 37 VnyG~--~g~nLPsp~~Vv~Ll---ks~~I--~~vRiyd~d 70 (171)
||||- ..+.-++..|.+-++ +..++ .++.+|||-
T Consensus 3 vclGLGsf~~~~~a~~QLA~ll~l~~~l~~~~~~v~~yDPv 43 (56)
T PF07985_consen 3 VCLGLGSFSSSRSARYQLALLLLLKEELSIPRDQVSIYDPV 43 (56)
T ss_pred EEEEecCccccccHHHHHHHHHHHHHHhCCCCCcEEEECCC
Confidence 67774 223455555544433 34566 799999873
No 66
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=32.48 E-value=85 Score=28.44 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=52.6
Q ss_pred CCHHHHHHhhCCCceEEecCCcchHHHhhhChHHHHHHHHhhccccCCCceEEEEEecCCCCCCCcchhhhhHHHHHHHH
Q 046740 69 PNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQNFANNVKFKYIAVGNEAKPGDDFAWYLVPAMRNIQN 148 (171)
Q Consensus 69 ~d~~vL~Al~gsgI~v~v~vpN~~l~~lAss~~~A~~WV~~nV~py~p~~~I~~IaVGNEv~~~~~~~~~lvPAm~Ni~~ 148 (171)
--.++|+++-.+|=-+.+| ..+.+. =+|+.|.+|..+-+..++.. |-.++.-|.-.. .-+-+
T Consensus 173 G~m~VLkp~idsGkik~~G--e~~~d~--W~ps~Aq~~men~lta~~~~--vdaVvA~nDgta------------gGaI~ 234 (341)
T COG4213 173 GAMKVLKPLIDSGKIKVVG--EQWTDG--WLPSNAQQIMENLLTANYND--IDAVVAPNDGTA------------GGAIA 234 (341)
T ss_pred cHHHHHHHHhhCCceEEee--eccccc--cCHHHHHHHHHHHHhcccCc--eeEEEcCCCchh------------HHHHH
Confidence 3345899998888777655 334443 37899999999999988654 666665555221 11236
Q ss_pred HHHhCCCCCCcEEe
Q 046740 149 AINGANLGSQIKVS 162 (171)
Q Consensus 149 AL~~~gL~~~IKVS 162 (171)
||+..||++.+.||
T Consensus 235 aL~a~Gl~g~vpVs 248 (341)
T COG4213 235 ALKAQGLAGKVPVS 248 (341)
T ss_pred HHHhcccCCCCccc
Confidence 88899998878765
No 67
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=32.26 E-value=23 Score=31.54 Aligned_cols=17 Identities=35% Similarity=0.708 Sum_probs=15.4
Q ss_pred ChHHHHHHHHhhccccC
Q 046740 99 NQAESNTWVQNNVQNFA 115 (171)
Q Consensus 99 s~~~A~~WV~~nV~py~ 115 (171)
|+..|-+|||+||..|=
T Consensus 188 Dq~~AL~WV~~nI~~FG 204 (535)
T PF00135_consen 188 DQRLALKWVQDNIAAFG 204 (535)
T ss_dssp HHHHHHHHHHHHGGGGT
T ss_pred hhHHHHHHHHhhhhhcc
Confidence 77899999999999993
No 68
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=31.91 E-value=1.4e+02 Score=23.51 Aligned_cols=56 Identities=18% Similarity=0.410 Sum_probs=36.9
Q ss_pred CCHHHHHHhhCCCceEEecCC-cchHHHhhhChHHHHHHHHhhccccCCCceEEEEEecCCCCCC
Q 046740 69 PNREALEALRGSNIEVMLGLP-NNDLRRIASNQAESNTWVQNNVQNFANNVKFKYIAVGNEAKPG 132 (171)
Q Consensus 69 ~d~~vL~Al~gsgI~v~v~vp-N~~l~~lAss~~~A~~WV~~nV~py~p~~~I~~IaVGNEv~~~ 132 (171)
+..+-++-|+..|++-++-+| ++++..+ .+++.++.-+... .++++|+||.+-.-+
T Consensus 63 s~~ek~~~l~~~Gvd~~~~~~F~~~~~~l-----s~~~Fi~~iL~~~---l~~~~ivvG~DfrFG 119 (157)
T PF06574_consen 63 SLEEKLELLESLGVDYVIVIPFTEEFANL-----SPEDFIEKILKEK---LNVKHIVVGEDFRFG 119 (157)
T ss_dssp -HHHHHHHHHHTTESEEEEE-CCCHHCCS------HHHHHHHHCCCH---CTEEEEEEETT-EES
T ss_pred CHHHHHHHHHHcCCCEEEEecchHHHHcC-----CHHHHHHHHHHhc---CCccEEEEccCccCC
Confidence 344567778888888877776 4466554 3677777766633 588999999775544
No 69
>PRK11660 putative transporter; Provisional
Probab=31.47 E-value=88 Score=29.47 Aligned_cols=19 Identities=11% Similarity=-0.008 Sum_probs=10.9
Q ss_pred HHHhhCCCceEEecCCcchH
Q 046740 74 LEALRGSNIEVMLGLPNNDL 93 (171)
Q Consensus 74 L~Al~gsgI~v~v~vpN~~l 93 (171)
.+-++. |+++.+.=.++++
T Consensus 516 ~~~l~~-g~~l~l~~l~~~v 534 (568)
T PRK11660 516 VKRLPE-GCELRICNLQFQP 534 (568)
T ss_pred HHHHHC-CCEEEEecCChHH
Confidence 334456 7777666555544
No 70
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=31.37 E-value=85 Score=22.57 Aligned_cols=41 Identities=7% Similarity=0.260 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCcCe--EE-eeCCCHHHHHHhhCCCceEEecCCc
Q 046740 50 PDVIALCYQNNIRR--MR-IYDPNREALEALRGSNIEVMLGLPN 90 (171)
Q Consensus 50 ~~Vv~Llks~~I~~--vR-iyd~d~~vL~Al~gsgI~v~v~vpN 90 (171)
+...+.|+++|+.- |+ +.+.++.+++.++.-.+++++.+|+
T Consensus 33 ~gT~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~ 76 (110)
T cd01424 33 EGTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPS 76 (110)
T ss_pred hHHHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEECCC
Confidence 45666788888752 22 2255688888888888888888875
No 71
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=31.30 E-value=1e+02 Score=22.94 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=36.2
Q ss_pred CCChHHHHHHHHhcCcCeEEeeCCC-----HHHHHHhhCCCceEEecCC
Q 046740 46 LPSKPDVIALCYQNNIRRMRIYDPN-----REALEALRGSNIEVMLGLP 89 (171)
Q Consensus 46 LPsp~~Vv~Llks~~I~~vRiyd~d-----~~vL~Al~gsgI~v~v~vp 89 (171)
-.++++.++..++.|++.+=|-|-+ ++-.+..+..||++.+|+-
T Consensus 15 ~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E 63 (175)
T PF02811_consen 15 KDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVE 63 (175)
T ss_dssp SSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEE
T ss_pred cCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEe
Confidence 4489999999999999999998764 3456676778999998875
No 72
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=30.97 E-value=83 Score=22.05 Aligned_cols=33 Identities=9% Similarity=0.021 Sum_probs=24.4
Q ss_pred HHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceE
Q 046740 51 DVIALCYQNNIRRMRIYDPNREALEALRGSNIEV 84 (171)
Q Consensus 51 ~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v 84 (171)
++.+-+++.| .++.++.+++.+.+.|+.+|+.-
T Consensus 62 ~l~~~~~~~g-~~l~l~~~~~~v~~~l~~~gl~~ 94 (100)
T cd06844 62 ERSRLAEAVG-GQFVLTGISPAVRITLTESGLDK 94 (100)
T ss_pred HHHHHHHHcC-CEEEEECCCHHHHHHHHHhCchh
Confidence 3344445565 67888999999999999888753
No 73
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=30.92 E-value=82 Score=21.91 Aligned_cols=40 Identities=5% Similarity=0.142 Sum_probs=29.4
Q ss_pred HHHHHHHhcCcC----eEEeeCCCHHHHHHhhCCCceEEecCCc
Q 046740 51 DVIALCYQNNIR----RMRIYDPNREALEALRGSNIEVMLGLPN 90 (171)
Q Consensus 51 ~Vv~Llks~~I~----~vRiyd~d~~vL~Al~gsgI~v~v~vpN 90 (171)
...++|+++||. .-|+++-.+++++.++.-.+++++-.|+
T Consensus 21 gTa~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~ 64 (90)
T smart00851 21 GTAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLY 64 (90)
T ss_pred HHHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCC
Confidence 346778888875 2346666677888888888888888775
No 74
>COG0251 TdcF Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]
Probab=30.62 E-value=52 Score=25.10 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=21.8
Q ss_pred chhhhhHHHHHHHHHHHhCCCC--CCcEEe
Q 046740 135 FAWYLVPAMRNIQNAINGANLG--SQIKVS 162 (171)
Q Consensus 135 ~~~~lvPAm~Ni~~AL~~~gL~--~~IKVS 162 (171)
...+.--+++||.+.|+++|.+ +-+|++
T Consensus 49 ~~~Q~~~~l~ni~a~L~~aG~~~~~Vvk~~ 78 (130)
T COG0251 49 IEAQTRQALANIKAVLEAAGSTLDDVVKVT 78 (130)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEEEE
Confidence 5567889999999999999964 335554
No 75
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=29.83 E-value=1.4e+02 Score=21.05 Aligned_cols=46 Identities=7% Similarity=0.213 Sum_probs=31.0
Q ss_pred hHHHHHHHHhcCcCeEEee----CC-CHH----HHHHhhCCCceEEecCCcchHH
Q 046740 49 KPDVIALCYQNNIRRMRIY----DP-NRE----ALEALRGSNIEVMLGLPNNDLR 94 (171)
Q Consensus 49 p~~Vv~Llks~~I~~vRiy----d~-d~~----vL~Al~gsgI~v~v~vpN~~l~ 94 (171)
-+-..++|+++||.-.++. ++ .++ +++.++...|+++|-.|...=.
T Consensus 19 T~gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~~~~ 73 (95)
T PF02142_consen 19 TEGTAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYPFSD 73 (95)
T ss_dssp EHHHHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--THHH
T ss_pred ChHHHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCCCcc
Confidence 3556789999999854443 34 345 9999999999999998865443
No 76
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=29.79 E-value=1.3e+02 Score=27.12 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=35.5
Q ss_pred CChHHHHHHHHhcCcCeEEeeCCC---------------HHHHHHhhCCCceEEecCCc
Q 046740 47 PSKPDVIALCYQNNIRRMRIYDPN---------------REALEALRGSNIEVMLGLPN 90 (171)
Q Consensus 47 Psp~~Vv~Llks~~I~~vRiyd~d---------------~~vL~Al~gsgI~v~v~vpN 90 (171)
.++.+.++.++..|++.|-++++| .++-++++.+|++|..-.+|
T Consensus 32 ~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~n 90 (382)
T TIGR02631 32 LDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTN 90 (382)
T ss_pred cCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeecc
Confidence 378899999999999999998643 24678899999998765554
No 77
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=29.77 E-value=97 Score=23.03 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=32.4
Q ss_pred HHHHHHHHh-cCc--CeEEe--eCCCHHHHHHhhCCCceEEecCCc
Q 046740 50 PDVIALCYQ-NNI--RRMRI--YDPNREALEALRGSNIEVMLGLPN 90 (171)
Q Consensus 50 ~~Vv~Llks-~~I--~~vRi--yd~d~~vL~Al~gsgI~v~v~vpN 90 (171)
+...++|++ +|+ .+||+ .+-+|+++..+++-.|.+++-.|+
T Consensus 34 ~gTa~~L~~~~Gi~v~~vk~~~~~g~~~i~~~i~~g~i~~VInt~~ 79 (115)
T cd01422 34 GTTGLLIQEATGLTVNRMKSGPLGGDQQIGALIAEGEIDAVIFFRD 79 (115)
T ss_pred chHHHHHHHhhCCcEEEEecCCCCchhHHHHHHHcCceeEEEEcCC
Confidence 456778888 776 45566 677888999999999999988886
No 78
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=29.15 E-value=57 Score=24.21 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=22.5
Q ss_pred chhhhhHHHHHHHHHHHhCC-C--CCCcEEe
Q 046740 135 FAWYLVPAMRNIQNAINGAN-L--GSQIKVS 162 (171)
Q Consensus 135 ~~~~lvPAm~Ni~~AL~~~g-L--~~~IKVS 162 (171)
+..+.--+++||...|+++| . ++-+|++
T Consensus 32 ~~~Q~~~~~~Nl~~~L~~aG~~~~~dVvk~t 62 (114)
T cd06152 32 LEEEIDQAFDNVELALKAAGGKGWEQVYKVN 62 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHEEEEE
Confidence 56688899999999999999 5 3446665
No 79
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=28.41 E-value=2e+02 Score=20.93 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=49.0
Q ss_pred HHHHHhcCcCeEEeeCCCHH----------HHHHhhCCCceEEecCCcchHHHhhhChHHHHHHHHhhccccCCCceEEE
Q 046740 53 IALCYQNNIRRMRIYDPNRE----------ALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQNFANNVKFKY 122 (171)
Q Consensus 53 v~Llks~~I~~vRiyd~d~~----------vL~Al~gsgI~v~v~vpN~~l~~lAss~~~A~~WV~~nV~py~p~~~I~~ 122 (171)
|+-|.++|.+++-+...++. ..++++..|++.........-..-. .......|+++. .| ..
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~----~p----da 71 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSED-AREAQLLWLRRL----RP----DA 71 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHH-HHHHHHHHHHTC----SS----SE
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchh-HHHHHHHHHhcC----CC----cE
Confidence 35567778888888764432 5778889999875544222111110 112223388766 23 25
Q ss_pred EEecCCCCCCCcchhhhhHHHHHHHHHHHhCCCC--CCcEEec
Q 046740 123 IAVGNEAKPGDDFAWYLVPAMRNIQNAINGANLG--SQIKVST 163 (171)
Q Consensus 123 IaVGNEv~~~~~~~~~lvPAm~Ni~~AL~~~gL~--~~IKVST 163 (171)
|.++|+.. ..-+..+|.+.|+. +++.|-+
T Consensus 72 ii~~~~~~------------a~~~~~~l~~~g~~vP~di~vv~ 102 (160)
T PF13377_consen 72 IICSNDRL------------ALGVLRALRELGIRVPQDISVVS 102 (160)
T ss_dssp EEESSHHH------------HHHHHHHHHHTTSCTTTTSEEEE
T ss_pred EEEcCHHH------------HHHHHHHHHHcCCcccccccEEE
Confidence 66665421 12245677788873 5576654
No 80
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=28.01 E-value=1.7e+02 Score=20.15 Aligned_cols=46 Identities=9% Similarity=0.000 Sum_probs=37.8
Q ss_pred hHHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCCcchHH
Q 046740 49 KPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLR 94 (171)
Q Consensus 49 p~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vpN~~l~ 94 (171)
....++++...+++-+=--.--+..++.|+..||+++.+.++..+.
T Consensus 50 ~~~~~~~l~~~~v~~vi~~~iG~~a~~~l~~~gI~v~~~~~~~~v~ 95 (102)
T cd00562 50 GKLAARLLALEGCDAVLVGGIGGPAAAKLEAAGIKPIKAAEGGTIE 95 (102)
T ss_pred chHHHHHHHHCCCcEEEEcccCccHHHHHHHcCCEEEEcCCCCcHH
Confidence 4567888889999888877888899999999999999887654443
No 81
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=27.99 E-value=1e+02 Score=27.05 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=26.4
Q ss_pred HHHHHHhcCcCeEEee----CC--CHHHHHHhh---CCCceEEecCC
Q 046740 52 VIALCYQNNIRRMRIY----DP--NREALEALR---GSNIEVMLGLP 89 (171)
Q Consensus 52 Vv~Llks~~I~~vRiy----d~--d~~vL~Al~---gsgI~v~v~vp 89 (171)
+...++..|.+.+|+- |+ |-+.+++++ |.+++++++..
T Consensus 149 ~~~~~~~~Gf~~~KiKvg~~~~~~d~~~v~~~re~~g~~~~l~~DaN 195 (368)
T TIGR02534 149 AEERIEEKRHRSFKLKIGARDPADDVAHVVAIAKALGDRASVRVDVN 195 (368)
T ss_pred HHHHHHhcCcceEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 4445556899988874 33 345677775 57899999973
No 82
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=27.99 E-value=99 Score=26.23 Aligned_cols=54 Identities=19% Similarity=0.153 Sum_probs=40.7
Q ss_pred EeecCCCCCCCChHHHHHHHHhcCcCeEEeeCCCHH---------HHHHhhCCCceEEecCCcchH
Q 046740 37 VCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNRE---------ALEALRGSNIEVMLGLPNNDL 93 (171)
Q Consensus 37 VnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd~d~~---------vL~Al~gsgI~v~v~vpN~~l 93 (171)
..||+ ...+|+| .+++++...|.+-|=| |..|. +++|.+..|+..+|-||..+-
T Consensus 12 ~~~G~-~~~~~sp-~~~e~~a~~G~D~v~i-D~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~ 74 (249)
T TIGR03239 12 TLIGC-WSALGNP-ITTEVLGLAGFDWLLL-DGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEP 74 (249)
T ss_pred ceEEE-EEcCCCc-HHHHHHHhcCCCEEEE-ecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCH
Confidence 34554 3368886 6788899999998876 65554 688888999999999987653
No 83
>PF08800 VirE_N: VirE N-terminal domain; InterPro: IPR014907 This domain is associated with the N terminus of Virulence E proteins. The function of the domain is unknown.
Probab=27.98 E-value=39 Score=25.98 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=37.1
Q ss_pred CCCCChHHHHHHHHhcCcCeEEeeCCCHHHHHHh---hCCCceEEecCCcchHHHhhhChHHHHHHH
Q 046740 44 NNLPSKPDVIALCYQNNIRRMRIYDPNREALEAL---RGSNIEVMLGLPNNDLRRIASNQAESNTWV 107 (171)
Q Consensus 44 ~nLPsp~~Vv~Llks~~I~~vRiyd~d~~vL~Al---~gsgI~v~v~vpN~~l~~lAss~~~A~~WV 107 (171)
|+|+ ++++.++.+.. -.||.++-+| +|.|++++|-+.+.+-..+..+...++.|-
T Consensus 39 D~l~-~ee~~~~r~~l--------~~~p~t~~~f~SpSG~GvKi~v~~~~~~~~~lp~~~~~~~~~h 96 (136)
T PF08800_consen 39 DHLD-PEEAEELRQLL--------FEDPYTLAAFVSPSGRGVKIIVPFDYPDGSRLPQDEEEAELFH 96 (136)
T ss_pred CCCC-HHHHHHHHHHH--------hcCCcEEEEEEcCCCCeEEEEEEecCCCCccccchhHHHHHHH
Confidence 7888 88888777653 2244444444 578999999998776555656666666664
No 84
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=27.87 E-value=2.4e+02 Score=24.50 Aligned_cols=56 Identities=11% Similarity=0.129 Sum_probs=40.8
Q ss_pred ceeeEeecCCCCCCCChHHHHHHHHhcCcCeEEeeCCCH-HHHHHhhCCCceEEecCCcc
Q 046740 33 AQIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNR-EALEALRGSNIEVMLGLPNN 91 (171)
Q Consensus 33 ~~iGVnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd~d~-~vL~Al~gsgI~v~v~vpN~ 91 (171)
.-+|||.... -|...+.++++...+++-|-+-..+| +.++.++..|+.|+..+++-
T Consensus 63 ~pfgvn~~~~---~~~~~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~ 119 (307)
T TIGR03151 63 KPFGVNIMLL---SPFVDELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASV 119 (307)
T ss_pred CCcEEeeecC---CCCHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCH
Confidence 3468887653 26667888888888888776543333 38899999999999877653
No 85
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=27.79 E-value=1.9e+02 Score=22.04 Aligned_cols=48 Identities=13% Similarity=0.266 Sum_probs=31.2
Q ss_pred CChHHHHHHHHhcCcCeEEeeCCCH-------HHHHHhhCC---CceEEec--CCcchHH
Q 046740 47 PSKPDVIALCYQNNIRRMRIYDPNR-------EALEALRGS---NIEVMLG--LPNNDLR 94 (171)
Q Consensus 47 Psp~~Vv~Llks~~I~~vRiyd~d~-------~vL~Al~gs---gI~v~v~--vpN~~l~ 94 (171)
-+|+++++-.++.+.+-+=|-.-+. .++++|+.- .+.+++| .|+++..
T Consensus 40 ~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~ 99 (132)
T TIGR00640 40 QTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFD 99 (132)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHH
Confidence 3567888888877777776664442 356666654 4677888 6766544
No 86
>COG3050 HolD DNA polymerase III, psi subunit [DNA replication, recombination, and repair]
Probab=27.62 E-value=1.3e+02 Score=23.68 Aligned_cols=43 Identities=28% Similarity=0.442 Sum_probs=30.9
Q ss_pred HHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCCcchHHHhhhChHHHHHHHHhhccccCCCceEEEEEecCCCCCCC
Q 046740 55 LCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQNFANNVKFKYIAVGNEAKPGD 133 (171)
Q Consensus 55 Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vpN~~l~~lAss~~~A~~WV~~nV~py~p~~~I~~IaVGNEv~~~~ 133 (171)
+|++.||+.=.++-|. +|+| ++.+.+| .+||.|.|.||....+
T Consensus 7 lLqqmgItQW~L~rP~-----~LqG---~i~i~l~----------------------------e~iRLiiVA~~~p~~~ 49 (133)
T COG3050 7 LLQQMGITQWELRRPE-----RLQG---EIAISLP----------------------------EDIRLIIVANQLPALT 49 (133)
T ss_pred HHHHcCchheeecCch-----hhcC---ceeeccc----------------------------cceeEEEEccCCcccc
Confidence 5678888888887653 4555 5555554 3789999999987654
No 87
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=27.61 E-value=1.3e+02 Score=25.60 Aligned_cols=80 Identities=16% Similarity=0.281 Sum_probs=47.7
Q ss_pred CCHHHHHHhhCCCceEEecCCcc--------hHHHhhhChHHHHHHHHhhcccc-----CCCceEEEEEecCCCCCCCcc
Q 046740 69 PNREALEALRGSNIEVMLGLPNN--------DLRRIASNQAESNTWVQNNVQNF-----ANNVKFKYIAVGNEAKPGDDF 135 (171)
Q Consensus 69 ~d~~vL~Al~gsgI~v~v~vpN~--------~l~~lAss~~~A~~WV~~nV~py-----~p~~~I~~IaVGNEv~~~~~~ 135 (171)
++++++++.+.-|+++++.|.+. ....+.+++..-+.+++ ++..+ +-+++|-+ |-.... .
T Consensus 46 ~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~-~iv~~l~~~~~DGidiDw-----E~~~~~-d 118 (313)
T cd02874 46 PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLIN-NILALAKKYGYDGVNIDF-----ENVPPE-D 118 (313)
T ss_pred CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHH-HHHHHHHHhCCCcEEEec-----ccCCHH-H
Confidence 45677777766788888888653 34566667654444433 33322 34565543 433222 2
Q ss_pred hhhhhHHHHHHHHHHHhCCC
Q 046740 136 AWYLVPAMRNIQNAINGANL 155 (171)
Q Consensus 136 ~~~lvPAm~Ni~~AL~~~gL 155 (171)
......=++.++++|.+.|+
T Consensus 119 ~~~~~~fl~~lr~~l~~~~~ 138 (313)
T cd02874 119 REAYTQFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHHHHHHhhhcCc
Confidence 33456667889999987765
No 88
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=27.54 E-value=52 Score=23.81 Aligned_cols=42 Identities=12% Similarity=0.234 Sum_probs=25.0
Q ss_pred eEeecCCCCCC--CChHHHHHHHHhcCcCeEEeeCCCHHHHHHhh
Q 046740 36 VVCYGMCGNNL--PSKPDVIALCYQNNIRRMRIYDPNREALEALR 78 (171)
Q Consensus 36 GVnyG~~g~nL--Psp~~Vv~Llks~~I~~vRiyd~d~~vL~Al~ 78 (171)
|+.|=-.-+++ -+.-++++.|+..|+. |++|||--.--+...
T Consensus 4 GlafK~n~~D~R~Sp~~~l~~~L~~~g~~-V~~~DP~v~~~~~~~ 47 (106)
T PF03720_consen 4 GLAFKPNTDDIRESPALELIEELKERGAE-VSVYDPYVDEEEIKE 47 (106)
T ss_dssp -SSSSTTSS--TT-HHHHHHHHHHHTT-E-EEEE-TTSHHHHHHH
T ss_pred EEEECCCCcccccCHHHHHHHHHHHCCCE-EEEECCccChHHHHh
Confidence 45554434443 3446788899999985 999999877655544
No 89
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=27.38 E-value=1.3e+02 Score=24.61 Aligned_cols=51 Identities=18% Similarity=0.131 Sum_probs=38.6
Q ss_pred eeEeecCCCCCCCChHHHHHHHHhcCcCeEEeeCCCH---H-HHHHhhCCCceEEe
Q 046740 35 IVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNR---E-ALEALRGSNIEVML 86 (171)
Q Consensus 35 iGVnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd~d~---~-vL~Al~gsgI~v~v 86 (171)
..+|+.+.-.++ +-++.++.++..|++.|-++.+.. + +.+.+...|+++..
T Consensus 3 ~~~~~~~~~~~~-~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 3 FAANLSMLFTEL-PFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred eeEehhHhhcCC-CHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEE
Confidence 467777655565 568899999999999999975332 2 66778899999863
No 90
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=27.32 E-value=2.3e+02 Score=23.67 Aligned_cols=44 Identities=9% Similarity=0.202 Sum_probs=33.4
Q ss_pred CChHHHHHHHHhcCcCeEEeeCCCH--------HHHHHhhC-CCceEEe--cCCc
Q 046740 47 PSKPDVIALCYQNNIRRMRIYDPNR--------EALEALRG-SNIEVML--GLPN 90 (171)
Q Consensus 47 Psp~~Vv~Llks~~I~~vRiyd~d~--------~vL~Al~g-sgI~v~v--~vpN 90 (171)
..|-++++.|++.|.+.+-+.|-|. ++++.++. .-.++.+ |+..
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIrs 84 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIRD 84 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcCC
Confidence 3799999999999999999998765 57777765 3346666 5544
No 91
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=27.05 E-value=2.2e+02 Score=25.04 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCcCeEEee-------CCCHH---------HHHHhhCCCceEEecCCcc
Q 046740 50 PDVIALCYQNNIRRMRIY-------DPNRE---------ALEALRGSNIEVMLGLPNN 91 (171)
Q Consensus 50 ~~Vv~Llks~~I~~vRiy-------d~d~~---------vL~Al~gsgI~v~v~vpN~ 91 (171)
++-++++|..|++-|||. +|.+. +++.++..||+|+++++..
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~ 70 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTA 70 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTT
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEeccc
Confidence 456788999999999973 34443 6888899999999988643
No 92
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.69 E-value=4.8e+02 Score=23.59 Aligned_cols=89 Identities=16% Similarity=0.185 Sum_probs=49.2
Q ss_pred eeEeecCCCCCC---CChHHHHHHHHh----cCcCeEEeeC-----CCHHHHHHhhCCC---ceEEecC---CcchHHHh
Q 046740 35 IVVCYGMCGNNL---PSKPDVIALCYQ----NNIRRMRIYD-----PNREALEALRGSN---IEVMLGL---PNNDLRRI 96 (171)
Q Consensus 35 iGVnyG~~g~nL---Psp~~Vv~Llks----~~I~~vRiyd-----~d~~vL~Al~gsg---I~v~v~v---pN~~l~~l 96 (171)
+|.|.|..|.++ +...+..+|++. .|+.++|+-. -+++.|++++.++ ..+.+++ .++.|..+
T Consensus 179 ~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~~~g~~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M 258 (420)
T PRK14339 179 LGQNVNNYGKRFSSEHEKVDFSDLLDKLSEIEGLERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAM 258 (420)
T ss_pred eeeccccccCCCcCCcccccHHHHHHHHhcCCCccEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhc
Confidence 466644444333 122235556655 4778899753 3467899999875 3566666 23346566
Q ss_pred hhChH-----HHHHHHHhhccccCCCceEE-EEEecC
Q 046740 97 ASNQA-----ESNTWVQNNVQNFANNVKFK-YIAVGN 127 (171)
Q Consensus 97 Ass~~-----~A~~WV~~nV~py~p~~~I~-~IaVGN 127 (171)
..... .+-.++++. .|+..|. ++.||-
T Consensus 259 ~R~~t~~~~~~~v~~lr~~----~p~i~i~~d~IvGf 291 (420)
T PRK14339 259 KRGYTKEWFLNRAEKLRAL----VPEVSISTDIIVGF 291 (420)
T ss_pred cCCCCHHHHHHHHHHHHHH----CCCCEEEEEEEEEC
Confidence 44322 233444443 4555554 578883
No 93
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=26.24 E-value=1.8e+02 Score=26.34 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=35.6
Q ss_pred ChHH----HHHHHHhcCcCeEEeeCCC---HHHHHHhhCCCceEE--ecCCcchHH
Q 046740 48 SKPD----VIALCYQNNIRRMRIYDPN---REALEALRGSNIEVM--LGLPNNDLR 94 (171)
Q Consensus 48 sp~~----Vv~Llks~~I~~vRiyd~d---~~vL~Al~gsgI~v~--v~vpN~~l~ 94 (171)
+|++ +.+|+|..|...|||=+.. .++++++...||+|+ +|+.-+...
T Consensus 111 s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~~GIPV~gHiGLtPQs~~ 166 (332)
T PLN02424 111 STDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVEAGIAVMGHVGLTPQAIS 166 (332)
T ss_pred CHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHHHcCCCEEEeecccceeeh
Confidence 5666 4568899999999999872 468999999999999 555433333
No 94
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=26.20 E-value=2.5e+02 Score=24.18 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=37.7
Q ss_pred CCChHHHHHHHHhcCcCeEEee---------------CCCHH-HHHHhhCCCceEEecCCcchHHHhhhChHHHHHHHH
Q 046740 46 LPSKPDVIALCYQNNIRRMRIY---------------DPNRE-ALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQ 108 (171)
Q Consensus 46 LPsp~~Vv~Llks~~I~~vRiy---------------d~d~~-vL~Al~gsgI~v~v~vpN~~l~~lAss~~~A~~WV~ 108 (171)
-|+.++|.+-+|..|+++|+|. ..+++ --..|...|++|.. .+..|...+.-.+=|++
T Consensus 182 ~P~~~~vi~~L~~~g~k~V~L~PlMlVAGdHa~nDmaGde~dSWks~L~~~G~~v~~-----~l~GLGE~~~i~~ifi~ 255 (262)
T PF06180_consen 182 YPSLEDVIARLKKKGIKKVHLIPLMLVAGDHAKNDMAGDEEDSWKSRLEAAGFEVTC-----VLKGLGEYPAIQQIFIE 255 (262)
T ss_dssp SSBHHHHHHHHHHHT-SEEEEEEESSS--HHHHCCCCSSSTTSHHHHHHHTT-EEEE---------GGGSHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCeEEEEecccccchhhhhhhcCCCcchHHHHHHHCCCEEEE-----EeccCcCCHHHHHHHHH
Confidence 5999999999999999999986 12222 23344557888854 57777777777777775
No 95
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.15 E-value=1.4e+02 Score=24.89 Aligned_cols=54 Identities=11% Similarity=0.296 Sum_probs=37.3
Q ss_pred ChHHHHHHHHhcCcCeEEeeCCC----HHHHHHhhC--CCceEEecCCcchHHHhhhChHHHHHHHHhh
Q 046740 48 SKPDVIALCYQNNIRRMRIYDPN----REALEALRG--SNIEVMLGLPNNDLRRIASNQAESNTWVQNN 110 (171)
Q Consensus 48 sp~~Vv~Llks~~I~~vRiyd~d----~~vL~Al~g--sgI~v~v~vpN~~l~~lAss~~~A~~WV~~n 110 (171)
.|+|+.+ ..+.|.+-+|+|+++ ++-+++|++ .+++++.+ .-+ +.+....|++..
T Consensus 117 TptEi~~-a~~~Ga~~vKlFPa~~~gg~~~lk~l~~p~p~~~~~pt---GGV-----~~~ni~~~l~ag 176 (212)
T PRK05718 117 TPSELML-GMELGLRTFKFFPAEASGGVKMLKALAGPFPDVRFCPT---GGI-----SPANYRDYLALP 176 (212)
T ss_pred CHHHHHH-HHHCCCCEEEEccchhccCHHHHHHHhccCCCCeEEEe---CCC-----CHHHHHHHHhCC
Confidence 6788444 667899999999876 577888886 36666643 222 346667787754
No 96
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=25.56 E-value=1.9e+02 Score=24.62 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=42.8
Q ss_pred eeEeecCCCCCCCChHHHHHHHHhcCcCeEEeeC---CCHHHHHHhhCCCceEEecCCcchHHHhhhChHHHHHHHHh
Q 046740 35 IVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYD---PNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQN 109 (171)
Q Consensus 35 iGVnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd---~d~~vL~Al~gsgI~v~v~vpN~~l~~lAss~~~A~~WV~~ 109 (171)
.|+-|-.- |--.+-++++.+.++...||=- .|...|+..+.+|.+|++...-..+..+ ..|-+++++
T Consensus 68 ~gi~f~st----pfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~EI----~~Av~~~~~ 137 (241)
T PF03102_consen 68 LGIDFFST----PFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEEI----ERAVEVLRE 137 (241)
T ss_dssp TT-EEEEE----E-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHH----HHHHHHHHH
T ss_pred cCCEEEEC----CCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHHHH----HHHHHHHHh
Confidence 45555442 3335668899999999999864 3455899999999999999987778766 667777733
No 97
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.49 E-value=3.6e+02 Score=25.41 Aligned_cols=92 Identities=16% Similarity=0.245 Sum_probs=52.8
Q ss_pred eeeEeecCCCCCCCC----hHHHHHHHHhcCcCeEEeeCC-----CHHHHHHhhCCCc---eEEecC--C-cchHHHhhh
Q 046740 34 QIVVCYGMCGNNLPS----KPDVIALCYQNNIRRMRIYDP-----NREALEALRGSNI---EVMLGL--P-NNDLRRIAS 98 (171)
Q Consensus 34 ~iGVnyG~~g~nLPs----p~~Vv~Llks~~I~~vRiyd~-----d~~vL~Al~gsgI---~v~v~v--p-N~~l~~lAs 98 (171)
.+|-|.+..|.++-. -.+..+.++..++.++|+.-. +++++++++.+|- .+.+++ . ++.|..+..
T Consensus 263 L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R 342 (509)
T PRK14327 263 LLGQNVNAYGKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMAR 342 (509)
T ss_pred EEeeccccCcccccccchHHHHHHHHHHhCCCceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcCC
Confidence 357776666655432 234445555567889997644 3479999998872 466666 3 334666654
Q ss_pred ChHHHHHH--HHhhccccCCCceEE-EEEec
Q 046740 99 NQAESNTW--VQNNVQNFANNVKFK-YIAVG 126 (171)
Q Consensus 99 s~~~A~~W--V~~nV~py~p~~~I~-~IaVG 126 (171)
.... +.| .-..+..+.|+..+. .+.||
T Consensus 343 ~~t~-e~~~~~v~~lr~~~p~i~i~tdiIvG 372 (509)
T PRK14327 343 KYTR-ESYLELVRKIKEAIPNVALTTDIIVG 372 (509)
T ss_pred CCCH-HHHHHHHHHHHHhCCCcEEeeeEEEe
Confidence 3322 221 112233345777764 57888
No 98
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=25.32 E-value=41 Score=24.22 Aligned_cols=28 Identities=7% Similarity=0.048 Sum_probs=22.7
Q ss_pred chhhhhHHHHHHHHHHHhCCCC--CCcEEe
Q 046740 135 FAWYLVPAMRNIQNAINGANLG--SQIKVS 162 (171)
Q Consensus 135 ~~~~lvPAm~Ni~~AL~~~gL~--~~IKVS 162 (171)
...+.--+|+||...|+++|.+ +-+|++
T Consensus 27 ~~~Q~~~~~~nl~~~L~~~G~~~~dvvk~~ 56 (105)
T cd06150 27 ITGQTRQVLAKIDALLAEAGSDKSRILSAT 56 (105)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEEEE
Confidence 5667889999999999999974 446665
No 99
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=24.89 E-value=88 Score=24.42 Aligned_cols=82 Identities=18% Similarity=0.317 Sum_probs=47.0
Q ss_pred HHHHHHhhCC--CceEEecCCcchHH---HhhhChHHHHHHHHhhc---ccc-CCCceEEEEEecCCCCCCCcchhhhhH
Q 046740 71 REALEALRGS--NIEVMLGLPNNDLR---RIASNQAESNTWVQNNV---QNF-ANNVKFKYIAVGNEAKPGDDFAWYLVP 141 (171)
Q Consensus 71 ~~vL~Al~gs--gI~v~v~vpN~~l~---~lAss~~~A~~WV~~nV---~py-~p~~~I~~IaVGNEv~~~~~~~~~lvP 141 (171)
..-++.++.. |++|++.+.+..-. .++++++..++++++=+ ..| +-+++|-+=-.+++.- .....+..
T Consensus 52 ~~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~---~~~~~~~~ 128 (210)
T cd00598 52 KGALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADN---SDRENFIT 128 (210)
T ss_pred HHHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCc---cHHHHHHH
Confidence 3456666654 99999988764322 35666666555544332 222 3455655432222210 02356788
Q ss_pred HHHHHHHHHHhCCC
Q 046740 142 AMRNIQNAINGANL 155 (171)
Q Consensus 142 Am~Ni~~AL~~~gL 155 (171)
.|+.++.+|.+.++
T Consensus 129 ll~~lr~~l~~~~~ 142 (210)
T cd00598 129 LLRELRSALGAANY 142 (210)
T ss_pred HHHHHHHHhcccCc
Confidence 89999999987655
No 100
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=24.65 E-value=3.1e+02 Score=20.60 Aligned_cols=88 Identities=16% Similarity=0.159 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCCcchHHHhhhChHHHHHHHHhhccccCCCceEEEEEecCCC
Q 046740 50 PDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQNFANNVKFKYIAVGNEA 129 (171)
Q Consensus 50 ~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vpN~~l~~lAss~~~A~~WV~~nV~py~p~~~I~~IaVGNEv 129 (171)
..+++.|.+.+ -+|+.+--++.=++. ..+++++.+-..+ ...+. .| + .+.+.-+.++|...
T Consensus 12 ~~l~~~L~~~~-~~V~~~~R~~~~~~~--~~~~~~~~~d~~d-~~~~~----~a-------l----~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 12 RALAKQLLRRG-HEVTALVRSPSKAED--SPGVEIIQGDLFD-PDSVK----AA-------L----KGADAVIHAAGPPP 72 (183)
T ss_dssp HHHHHHHHHTT-SEEEEEESSGGGHHH--CTTEEEEESCTTC-HHHHH----HH-------H----TTSSEEEECCHSTT
T ss_pred HHHHHHHHHCC-CEEEEEecCchhccc--ccccccceeeehh-hhhhh----hh-------h----hhcchhhhhhhhhc
Confidence 45777777777 789999888886655 8899988775532 23221 11 1 23555566666443
Q ss_pred CCCCcchhhhhHHHHHHHHHHHhCCCCCCcEEecc
Q 046740 130 KPGDDFAWYLVPAMRNIQNAINGANLGSQIKVSTA 164 (171)
Q Consensus 130 ~~~~~~~~~lvPAm~Ni~~AL~~~gL~~~IKVSTa 164 (171)
. . .+.++++-+++++.|..+-|.+|+.
T Consensus 73 ~-------~-~~~~~~~~~a~~~~~~~~~v~~s~~ 99 (183)
T PF13460_consen 73 K-------D-VDAAKNIIEAAKKAGVKRVVYLSSA 99 (183)
T ss_dssp T-------H-HHHHHHHHHHHHHTTSSEEEEEEET
T ss_pred c-------c-ccccccccccccccccccceeeecc
Confidence 2 1 7889999999999998655666654
No 101
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=24.48 E-value=99 Score=23.52 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=20.5
Q ss_pred CCCChHHHHHHHHhcCc---CeEEeeCCC
Q 046740 45 NLPSKPDVIALCYQNNI---RRMRIYDPN 70 (171)
Q Consensus 45 nLPsp~~Vv~Llks~~I---~~vRiyd~d 70 (171)
-+|++++..+++++.|| ++|=+||.+
T Consensus 76 ~~p~~~~~~~~~~~~GI~~~~~vVvY~~~ 104 (138)
T cd01445 76 MEPSEAEFAAMFEAKGIDLDKHLIATDGD 104 (138)
T ss_pred CCCCHHHHHHHHHHcCCCCCCeEEEECCC
Confidence 46778888889988888 478888854
No 102
>PRK00124 hypothetical protein; Validated
Probab=24.34 E-value=56 Score=26.14 Aligned_cols=56 Identities=9% Similarity=0.085 Sum_probs=33.9
Q ss_pred hhhChHHHHHHHHhhccccCCCceEE---------------EEEecCCCCCCCcchhhhhHHHHHHHHHHHhCCC
Q 046740 96 IASNQAESNTWVQNNVQNFANNVKFK---------------YIAVGNEAKPGDDFAWYLVPAMRNIQNAINGANL 155 (171)
Q Consensus 96 lAss~~~A~~WV~~nV~py~p~~~I~---------------~IaVGNEv~~~~~~~~~lvPAm~Ni~~AL~~~gL 155 (171)
+.+.+.+|+.|+-+++.+- +.-|+ .|----|+++.. ....+ =+||++.+-|++.|-
T Consensus 50 V~~g~D~AD~~Iv~~~~~g--DiVIT~Di~LAa~~l~Kga~vl~prG~~yt~~-nI~~~-L~~R~~~~~lR~~G~ 120 (151)
T PRK00124 50 VDAGFDAADNEIVQLAEKG--DIVITQDYGLAALALEKGAIVLNPRGYIYTND-NIDQL-LAMRDLMATLRRSGI 120 (151)
T ss_pred eCCCCChHHHHHHHhCCCC--CEEEeCCHHHHHHHHHCCCEEECCCCcCCCHH-HHHHH-HHHHHHHHHHHHcCC
Confidence 4567899999999999865 22111 111112222211 22233 469999999999885
No 103
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=24.32 E-value=2.4e+02 Score=25.33 Aligned_cols=109 Identities=14% Similarity=0.235 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCcCeEEee--CCCHH----------------HHHHhhCC-----CceEEecCCcchHHHhhhChHHHHHH
Q 046740 50 PDVIALCYQNNIRRMRIY--DPNRE----------------ALEALRGS-----NIEVMLGLPNNDLRRIASNQAESNTW 106 (171)
Q Consensus 50 ~~Vv~Llks~~I~~vRiy--d~d~~----------------vL~Al~gs-----gI~v~v~vpN~~l~~lAss~~~A~~W 106 (171)
.+-.+.+|..|++|+-+= .-|++ .++.++.. ++.+|.|+|.+..+++..+...+.+.
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l 194 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAIAL 194 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcC
Confidence 466788888888877541 22222 22333333 34568889988888877666665554
Q ss_pred HHhhcccc----CCCceEEE-EEecCCCCCCCcchhhhhHHHHHHHHHHHhCCCCCCcEEe
Q 046740 107 VQNNVQNF----ANNVKFKY-IAVGNEAKPGDDFAWYLVPAMRNIQNAINGANLGSQIKVS 162 (171)
Q Consensus 107 V~~nV~py----~p~~~I~~-IaVGNEv~~~~~~~~~lvPAm~Ni~~AL~~~gL~~~IKVS 162 (171)
=-++|.-| .|+|.+.- ..-|...++..+ .-.--.+-....|.++|+. +..+|
T Consensus 195 ~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~---~~~~~~~~~~~~L~~~Gy~-~yeis 251 (400)
T PRK07379 195 NPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDE---TTAAMYRLAQEILTQAGYE-HYEIS 251 (400)
T ss_pred CCCEEEEecceecCCchhHHHhhcCCCCCCCHH---HHHHHHHHHHHHHHHcCCc-eeeee
Confidence 33344322 23333211 111211111111 1122234577889999985 46555
No 104
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=24.31 E-value=1.3e+02 Score=27.59 Aligned_cols=109 Identities=14% Similarity=0.209 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCcCeEEee--CCCHH----------------HHHHhhCCC-----ceEEecCCcchHHHhhhChHHHHHH
Q 046740 50 PDVIALCYQNNIRRMRIY--DPNRE----------------ALEALRGSN-----IEVMLGLPNNDLRRIASNQAESNTW 106 (171)
Q Consensus 50 ~~Vv~Llks~~I~~vRiy--d~d~~----------------vL~Al~gsg-----I~v~v~vpN~~l~~lAss~~~A~~W 106 (171)
++.+++++..|++++-|= +.|++ .++.++..| +.+|.|+|.+...++..+...+.+.
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l 231 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIAL 231 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhc
Confidence 678888888888887542 22222 233333334 4578899998888886666655543
Q ss_pred HHhhcccc----CCCceEEEEEecCCCCCCCcchhhhhHHHHHHHHHHHhCCCCCCcEEe
Q 046740 107 VQNNVQNF----ANNVKFKYIAVGNEAKPGDDFAWYLVPAMRNIQNAINGANLGSQIKVS 162 (171)
Q Consensus 107 V~~nV~py----~p~~~I~~IaVGNEv~~~~~~~~~lvPAm~Ni~~AL~~~gL~~~IKVS 162 (171)
=-++|.-| .|..+-.--.+|.+.++.. .....-++-....|.++|+. ++-++
T Consensus 232 ~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~---~~~~~~~~~~~~~L~~~Gy~-~~~~~ 287 (453)
T PRK13347 232 SPDRIAVFGYAHVPSRRKNQRLIDEAALPDA---EERLRQARAVADRLLAAGYV-PIGLD 287 (453)
T ss_pred CCCEEEEeccccccchhhHHhcCCccCCcCH---HHHHHHHHHHHHHHHHCCCE-EEecc
Confidence 22333322 1111000001233333221 12234445577888899985 35444
No 105
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=24.28 E-value=1.4e+02 Score=23.80 Aligned_cols=88 Identities=7% Similarity=-0.007 Sum_probs=48.2
Q ss_pred CCceeeEeecCCCCCCCChHHHHHHHHhcCcCeEEeeC------CCH-----HHHHHhhCCCceEEecCC-cchHHHhhh
Q 046740 31 TSAQIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYD------PNR-----EALEALRGSNIEVMLGLP-NNDLRRIAS 98 (171)
Q Consensus 31 ~~~~iGVnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd------~d~-----~vL~Al~gsgI~v~v~vp-N~~l~~lAs 98 (171)
....+|..+-..-+.--..++....++..|+..||++- ++. .++++++..|+.|.+.++ ...-. .
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~---~ 145 (273)
T PF04909_consen 69 PDRFIGFAAIPPPDPEDAVEELERALQELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEELGLPVLIHTGMTGFPD---A 145 (273)
T ss_dssp TTTEEEEEEETTTSHHHHHHHHHHHHHTTTESEEEEESSETTCCTTSGHCHHHHHHHHHHHT-EEEEEESHTHHHH---H
T ss_pred CCCEEEEEEecCCCchhHHHHHHHhccccceeeeEecCCCCccccccHHHHHHHHHHHHhhccceeeeccccchhh---h
Confidence 34455554433211111344555556678999999884 222 588999999999999966 11100 0
Q ss_pred ChHHHHHHHHhhccccCCCceEE
Q 046740 99 NQAESNTWVQNNVQNFANNVKFK 121 (171)
Q Consensus 99 s~~~A~~WV~~nV~py~p~~~I~ 121 (171)
....+.-..-..+..=+|+++|-
T Consensus 146 ~~~~~~~~~~~~~~~~~P~l~ii 168 (273)
T PF04909_consen 146 PSDPADPEELEELLERFPDLRII 168 (273)
T ss_dssp HHHHHHHHHHTTHHHHSTTSEEE
T ss_pred hHHHHHHHHHHHHHHHhcCCeEE
Confidence 11222333334444446887774
No 106
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=24.25 E-value=70 Score=24.67 Aligned_cols=30 Identities=17% Similarity=0.209 Sum_probs=22.5
Q ss_pred eEeecCCCCCCCChHHHHHHHHhcCcCeEEee
Q 046740 36 VVCYGMCGNNLPSKPDVIALCYQNNIRRMRIY 67 (171)
Q Consensus 36 GVnyG~~g~nLPsp~~Vv~Llks~~I~~vRiy 67 (171)
|||-| |.|..+-++.-+++...|.+.||-|
T Consensus 10 GINVG--G~nki~MaeLr~~l~~~Gf~~V~Ty 39 (137)
T PF08002_consen 10 GINVG--GKNKIKMAELREALEDLGFTNVRTY 39 (137)
T ss_dssp S-SBT--TBS---HHHHHHHHHHCT-EEEEEE
T ss_pred ceecC--CCCcccHHHHHHHHHHcCCCCceEE
Confidence 88887 7786678999999999999999987
No 107
>cd02199 YjgF_YER057c_UK114_like_1 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=24.24 E-value=70 Score=24.66 Aligned_cols=27 Identities=11% Similarity=-0.064 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHHhCCCC-----CCcEEec
Q 046740 137 WYLVPAMRNIQNAINGANLG-----SQIKVST 163 (171)
Q Consensus 137 ~~lvPAm~Ni~~AL~~~gL~-----~~IKVST 163 (171)
.+.--+|+|+...|+++|.+ +=||+++
T Consensus 56 ~Qt~~~~~Ni~~vL~~aG~~~~~~~dVvk~~v 87 (142)
T cd02199 56 EAARLCALNALAALKAALGDLDRVKRVVRLTG 87 (142)
T ss_pred HHHHHHHHHHHHHHHHhcCChhhcCCEEEEEE
Confidence 45778899999999999964 5567664
No 108
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=24.17 E-value=74 Score=27.50 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCcCeEEeeCCC--HHHHHHhhCCCceEE
Q 046740 50 PDVIALCYQNNIRRMRIYDPN--REALEALRGSNIEVM 85 (171)
Q Consensus 50 ~~Vv~Llks~~I~~vRiyd~d--~~vL~Al~gsgI~v~ 85 (171)
..++++++..|...|+|=|-. .+.++++...||+|+
T Consensus 97 ~~a~r~~~~aGa~aVkiEdg~~~~~~I~al~~agIpV~ 134 (264)
T PRK00311 97 RNAGRLMKEAGAHAVKLEGGEEVAETIKRLVERGIPVM 134 (264)
T ss_pred HHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHHCCCCEe
Confidence 447889999999999998863 357999999999997
No 109
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=24.08 E-value=4e+02 Score=21.81 Aligned_cols=97 Identities=14% Similarity=0.279 Sum_probs=51.4
Q ss_pred hHHHHHHHHhcCcCeEEee-CCCH---HHHHHhhCCCceEEecC-CcchHHHhhhChHHHHHHHHhhccccCCCceEEEE
Q 046740 49 KPDVIALCYQNNIRRMRIY-DPNR---EALEALRGSNIEVMLGL-PNNDLRRIASNQAESNTWVQNNVQNFANNVKFKYI 123 (171)
Q Consensus 49 p~~Vv~Llks~~I~~vRiy-d~d~---~vL~Al~gsgI~v~v~v-pN~~l~~lAss~~~A~~WV~~nV~py~p~~~I~~I 123 (171)
|.+.++.++..|.+.+-+- ++.. ++++..+..|+++-+.+ |...+ +.+.+|++.++.-.+
T Consensus 69 P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~---------------~~~~~~l~~vD~Vlv 133 (201)
T PF00834_consen 69 PERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPV---------------EELEPYLDQVDMVLV 133 (201)
T ss_dssp GGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-G---------------GGGTTTGCCSSEEEE
T ss_pred HHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCc---------------hHHHHHhhhcCEEEE
Confidence 4556666666665554432 1111 35666666666665555 22222 224456666554333
Q ss_pred EecCCC-CCCCcchhhhhHHHHHHHHHHHhCCCCCCcEE
Q 046740 124 AVGNEA-KPGDDFAWYLVPAMRNIQNAINGANLGSQIKV 161 (171)
Q Consensus 124 aVGNEv-~~~~~~~~~lvPAm~Ni~~AL~~~gL~~~IKV 161 (171)
. .-|+ +.++.+.+..+.-++.+++-+.+.|++-.|-|
T Consensus 134 M-sV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~v 171 (201)
T PF00834_consen 134 M-SVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEV 171 (201)
T ss_dssp E-SS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEE
T ss_pred E-EecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 3 3233 22223777888999999998888887544443
No 110
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=24.00 E-value=1.8e+02 Score=21.16 Aligned_cols=41 Identities=10% Similarity=0.120 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCcCeEEee---C-CCHHHHHHhhC-CCceEEecCCc
Q 046740 50 PDVIALCYQNNIRRMRIY---D-PNREALEALRG-SNIEVMLGLPN 90 (171)
Q Consensus 50 ~~Vv~Llks~~I~~vRiy---d-~d~~vL~Al~g-sgI~v~v~vpN 90 (171)
+-..++|+++|+.--++. + -+|++...+++ -.|+++|-+|+
T Consensus 32 ~gTa~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~ 77 (112)
T cd00532 32 GGTSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRD 77 (112)
T ss_pred cHHHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCC
Confidence 345677888887543333 2 46778888888 88888888875
No 111
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=23.98 E-value=1.3e+02 Score=25.54 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=36.7
Q ss_pred CCCChHHHHHHHHhcCcCeEEeeCCCHH---------HHHHhhCCCceEEecCCcchH
Q 046740 45 NLPSKPDVIALCYQNNIRRMRIYDPNRE---------ALEALRGSNIEVMLGLPNNDL 93 (171)
Q Consensus 45 nLPsp~~Vv~Llks~~I~~vRiyd~d~~---------vL~Al~gsgI~v~v~vpN~~l 93 (171)
.+|+| .+++++.+.|.+-|=| |..|. .++|.+..|+..+|-||..+=
T Consensus 26 ~~~sp-~~~e~~a~~G~D~v~i-D~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~ 81 (256)
T PRK10558 26 ALANP-ITTEVLGLAGFDWLVL-DGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEP 81 (256)
T ss_pred cCCCc-HHHHHHHhcCCCEEEE-ccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCH
Confidence 57886 7788899999888876 65543 578888999999999987653
No 112
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=23.75 E-value=53 Score=26.71 Aligned_cols=29 Identities=24% Similarity=0.613 Sum_probs=25.5
Q ss_pred CCCHHHHHHhhCCCceEEecCCcchHHHh
Q 046740 68 DPNREALEALRGSNIEVMLGLPNNDLRRI 96 (171)
Q Consensus 68 d~d~~vL~Al~gsgI~v~v~vpN~~l~~l 96 (171)
|++..+..|++.+||++...+|=+.+..+
T Consensus 5 n~seav~e~mkdagIdfa~slPC~~lk~l 33 (172)
T COG4032 5 NPSEAVYEAMKDAGIDFACSLPCDNLKNL 33 (172)
T ss_pred CHHHHHHHHHHHcCCcEEEeccHHHHHhH
Confidence 67788999999999999999998877655
No 113
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=23.60 E-value=1e+02 Score=22.56 Aligned_cols=28 Identities=21% Similarity=0.244 Sum_probs=22.2
Q ss_pred chhhhhHHHHHHHHHHHhCCC--CCCcEEe
Q 046740 135 FAWYLVPAMRNIQNAINGANL--GSQIKVS 162 (171)
Q Consensus 135 ~~~~lvPAm~Ni~~AL~~~gL--~~~IKVS 162 (171)
...+.--+++||.+.|+++|. ++-+|++
T Consensus 41 ~~~Q~~~~l~ni~~~L~~~G~~~~dvv~~~ 70 (121)
T PF01042_consen 41 IEEQTRQALDNIERILAAAGASLDDVVKVT 70 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-GGGEEEEE
T ss_pred HHHHHHHHHHhhhhhhhcCCCcceeEeeee
Confidence 556788899999999999995 4445655
No 114
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=23.55 E-value=1.9e+02 Score=22.35 Aligned_cols=45 Identities=16% Similarity=0.057 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCcCeEEee--CCCHHHHHHhhCC-CceEEecCCcchHHH
Q 046740 50 PDVIALCYQNNIRRMRIY--DPNREALEALRGS-NIEVMLGLPNNDLRR 95 (171)
Q Consensus 50 ~~Vv~Llks~~I~~vRiy--d~d~~vL~Al~gs-gI~v~v~vpN~~l~~ 95 (171)
+.+++.|+++||+++=-. +....++++|... ||+++.. .||+-..
T Consensus 5 ~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~~-~~E~~A~ 52 (172)
T PF02776_consen 5 EALAEALKANGVTHVFGVPGSGNLPLLDALEKSPGIRFIPV-RHEQGAA 52 (172)
T ss_dssp HHHHHHHHHTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE--SSHHHHH
T ss_pred HHHHHHHHHCCCeEEEEEeChhHhHHHHHhhhhcceeeecc-cCcchhH
Confidence 567899999999997654 2334589999988 7998775 5555443
No 115
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=22.93 E-value=2.1e+02 Score=23.84 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=35.5
Q ss_pred eeeEeecCCCCCC-C---ChHHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEe
Q 046740 34 QIVVCYGMCGNNL-P---SKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVML 86 (171)
Q Consensus 34 ~iGVnyG~~g~nL-P---sp~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v 86 (171)
.|+|+.|...... . +..++.+.|++.|+. +.+.+.+.+.++-++..++.+++
T Consensus 6 ~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~-v~~i~~~~~~~~~~~~~~~D~v~ 61 (304)
T PRK01372 6 KVAVLMGGTSAEREVSLNSGAAVLAALREAGYD-AHPIDPGEDIAAQLKELGFDRVF 61 (304)
T ss_pred EEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCE-EEEEecCcchHHHhccCCCCEEE
Confidence 4788887755442 2 567777888888888 44446777777766666677666
No 116
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=22.61 E-value=3.4e+02 Score=24.52 Aligned_cols=34 Identities=12% Similarity=0.075 Sum_probs=27.2
Q ss_pred CCCCCCChHHHHHHHHhcCcC-eEEeeCCCHHHHH
Q 046740 42 CGNNLPSKPDVIALCYQNNIR-RMRIYDPNREALE 75 (171)
Q Consensus 42 ~g~nLPsp~~Vv~Llks~~I~-~vRiyd~d~~vL~ 75 (171)
.|++--+++++.+.|+++||. -++-+.-|++.++
T Consensus 111 ~Gn~~~t~~~i~~~L~e~Gi~~G~~k~~id~~~ie 145 (382)
T TIGR02876 111 TGVKGETPYEIRKQLKEMGIKPGVWKFSVDVYKLE 145 (382)
T ss_pred ECCCCCCHHHHHHHHHHcCCCcCeeeCCCCHHHHH
Confidence 366767899999999999997 6777777787655
No 117
>PF12558 DUF3744: ATP-binding cassette cobalt transporter; InterPro: IPR022216 This domain family is found in bacteria, and is approximately 70 amino acids in length. The family is found in association with PF00005 from PFAM. There is a conserved REP sequence motif. There is a single completely conserved residue P that may be functionally important. The proteins in this family are frequently annotated as ABC Cobalt transporters however there is little accompanying literature to confirm this. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
Probab=22.59 E-value=1.3e+02 Score=20.76 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=37.2
Q ss_pred HHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCCcchHHHhhhCh--HHHHHHHHhhccc
Q 046740 54 ALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQ--AESNTWVQNNVQN 113 (171)
Q Consensus 54 ~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vpN~~l~~lAss~--~~A~~WV~~nV~p 113 (171)
++|.++||+ .|-=++||+..|+++.-.-.=.++..+.-+. ..-.+|..+...+
T Consensus 3 ~lL~~~GIR-------EPLYitALk~ag~~l~~~~~l~~l~~l~~~~~~~~l~~w~~~~~~~ 57 (74)
T PF12558_consen 3 DLLEQNGIR-------EPLYITALKYAGVDLTKEDHLSDLDNLDLSDVKEKLQQWQDKQPPP 57 (74)
T ss_pred chHhhcCCC-------ccHHHHHHHHcCCCcccCCCccCHHHCCcHHHHHHHHHHHhccCCc
Confidence 367888886 5778999999999986655445677765433 4457898855543
No 118
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=22.57 E-value=1.3e+02 Score=28.01 Aligned_cols=48 Identities=25% Similarity=0.382 Sum_probs=36.7
Q ss_pred EeecCCCCCCCChHHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCCcc
Q 046740 37 VCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNN 91 (171)
Q Consensus 37 VnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vpN~ 91 (171)
+-||+.| .++++.++++|++ +-+-|.|++..+.++.-|.+++.|=+.+
T Consensus 423 ~G~G~~G------~~la~~L~~~g~~-vvvId~d~~~~~~~~~~g~~~i~GD~~~ 470 (558)
T PRK10669 423 VGYGRVG------SLLGEKLLAAGIP-LVVIETSRTRVDELRERGIRAVLGNAAN 470 (558)
T ss_pred ECCChHH------HHHHHHHHHCCCC-EEEEECCHHHHHHHHHCCCeEEEcCCCC
Confidence 4455555 5688899998876 5666999999888888888888886543
No 119
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=22.32 E-value=1.8e+02 Score=21.00 Aligned_cols=52 Identities=12% Similarity=-0.082 Sum_probs=34.8
Q ss_pred CceeeEeecCCCCCCCChHHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceE
Q 046740 32 SAQIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEV 84 (171)
Q Consensus 32 ~~~iGVnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v 84 (171)
...|||+.... +.-.+++++.+.++.++++.--++|++..+.+++.-+++.-
T Consensus 57 ~~vi~i~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v~~~P~ 108 (126)
T cd03012 57 LVVIGVHSPEF-AFERDLANVKSAVLRYGITYPVANDNDYATWRAYGNQYWPA 108 (126)
T ss_pred eEEEEeccCcc-ccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhCCCcCCe
Confidence 34567764221 12246788888888888887777888888888876555443
No 120
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=22.26 E-value=2.4e+02 Score=21.90 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=17.6
Q ss_pred HHHHHHhcCcCeEEee--CCCHHHHHHhh-CCCceEEec
Q 046740 52 VIALCYQNNIRRMRIY--DPNREALEALR-GSNIEVMLG 87 (171)
Q Consensus 52 Vv~Llks~~I~~vRiy--d~d~~vL~Al~-gsgI~v~v~ 87 (171)
+++.|+..||++|=-+ +....++.++. ..+|+.+..
T Consensus 3 l~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~~ 41 (162)
T cd07038 3 LLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGN 41 (162)
T ss_pred HHHHHHHcCCCEEEEeCCccHHHHHHHHhhcCCceEEee
Confidence 4555566666555444 33334555553 235555433
No 121
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.00 E-value=2.1e+02 Score=24.17 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=54.6
Q ss_pred cCCceeeEeecCCCCCCCChHHHHHHHHhcCcCeEEeeCCCHH-----HHHHh-hC-CCceEEecCCcch-HHHhhhChH
Q 046740 30 TTSAQIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNRE-----ALEAL-RG-SNIEVMLGLPNND-LRRIASNQA 101 (171)
Q Consensus 30 ~~~~~iGVnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd~d~~-----vL~Al-~g-sgI~v~v~vpN~~-l~~lAss~~ 101 (171)
.--+.|||.|=...=.||. .--+++|||.--. +.++- +| -||-++.++.|+. ...+ .
T Consensus 40 ~~~sTiGIDFk~kti~l~g-----------~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni----~ 104 (207)
T KOG0078|consen 40 SFISTIGIDFKIKTIELDG-----------KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENI----R 104 (207)
T ss_pred CccceEEEEEEEEEEEeCC-----------eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHH----H
Confidence 3467799999887777776 3457889987544 44443 33 6888889998875 3333 3
Q ss_pred HHHHHHHhhccccCCCceEEEEEecCCCCC
Q 046740 102 ESNTWVQNNVQNFANNVKFKYIAVGNEAKP 131 (171)
Q Consensus 102 ~A~~WV~~nV~py~p~~~I~~IaVGNEv~~ 131 (171)
....||+.|--+ .+.-+.|||-.-.
T Consensus 105 ~W~~~I~e~a~~-----~v~~~LvGNK~D~ 129 (207)
T KOG0078|consen 105 NWIKNIDEHASD-----DVVKILVGNKCDL 129 (207)
T ss_pred HHHHHHHhhCCC-----CCcEEEeeccccc
Confidence 366666666554 3446899997643
No 122
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=21.84 E-value=86 Score=26.93 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=30.3
Q ss_pred HHHHHHhcCcCeEEeeCCC--HHHHHHhhCCCceEE
Q 046740 52 VIALCYQNNIRRMRIYDPN--REALEALRGSNIEVM 85 (171)
Q Consensus 52 Vv~Llks~~I~~vRiyd~d--~~vL~Al~gsgI~v~ 85 (171)
++++|++.|...|+|=|-+ .+.++++...||+|+
T Consensus 96 a~r~~~~aGa~aVkiEd~~~~~~~I~al~~agipV~ 131 (254)
T cd06557 96 AARLMKEAGADAVKLEGGAEVAETIRALVDAGIPVM 131 (254)
T ss_pred HHHHHHHhCCeEEEEcCcHHHHHHHHHHHHcCCCee
Confidence 5789999999999999874 568999999999988
No 123
>cd06151 YjgF_YER057c_UK114_like_3 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=21.62 E-value=1e+02 Score=22.99 Aligned_cols=29 Identities=14% Similarity=0.318 Sum_probs=23.2
Q ss_pred chhhhhHHHHHHHHHHHhCCC--CCCcEEec
Q 046740 135 FAWYLVPAMRNIQNAINGANL--GSQIKVST 163 (171)
Q Consensus 135 ~~~~lvPAm~Ni~~AL~~~gL--~~~IKVST 163 (171)
...+..-+|+||...|.++|. ++=+|+++
T Consensus 39 ~~~Q~~~~l~ni~~~L~~aG~~~~dVvk~~v 69 (126)
T cd06151 39 TETQTISVLKRIETILQSQGLTMGDVVKMRV 69 (126)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 556788999999999999995 45467764
No 124
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=21.37 E-value=1.3e+02 Score=22.40 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=18.6
Q ss_pred ChHHHHHHHHhcCcCeEEeeCCCH------HHHHHhhCCCceEE
Q 046740 48 SKPDVIALCYQNNIRRMRIYDPNR------EALEALRGSNIEVM 85 (171)
Q Consensus 48 sp~~Vv~Llks~~I~~vRiyd~d~------~vL~Al~gsgI~v~ 85 (171)
..++..+++++++|+.|=+-.|+. ++++.+++.|++|-
T Consensus 129 ~~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~v~ 172 (175)
T PF13727_consen 129 DLDDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVRVR 172 (175)
T ss_dssp -GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-EEE
T ss_pred CHHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCEEE
Confidence 456666666666666665554443 25556666666654
No 125
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.35 E-value=3.4e+02 Score=22.88 Aligned_cols=41 Identities=12% Similarity=0.258 Sum_probs=32.1
Q ss_pred CChHHHHHHHHhcCcCeEEeeCCCH---------HHHHHhhCCCceEEec
Q 046740 47 PSKPDVIALCYQNNIRRMRIYDPNR---------EALEALRGSNIEVMLG 87 (171)
Q Consensus 47 Psp~~Vv~Llks~~I~~vRiyd~d~---------~vL~Al~gsgI~v~v~ 87 (171)
..|-++++.|++.|.+.+-+.|-|. ++++.++..-+++.+|
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~~~v~vG 79 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFAEHIQIG 79 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhcCcEEEe
Confidence 4899999999999999999999774 4677776533566664
No 126
>COG3831 Uncharacterized conserved protein [Function unknown]
Probab=21.14 E-value=1.3e+02 Score=21.99 Aligned_cols=32 Identities=19% Similarity=0.394 Sum_probs=22.1
Q ss_pred CCceeeEeecCCCCCCCChHHHHHHHHhcCcCeEEeeCCCHHHHHH
Q 046740 31 TSAQIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEA 76 (171)
Q Consensus 31 ~~~~iGVnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd~d~~vL~A 76 (171)
.+..+=+|||++|.+ |=.+++-||-..+...+
T Consensus 23 ~g~~L~~~wGRiG~~--------------Gq~~~k~F~~~~~a~~~ 54 (85)
T COG3831 23 EGAELTRNWGRIGTK--------------GQSQIKSFDDSADAEKA 54 (85)
T ss_pred ecceeEEeecccccC--------------cceeeeeCCCHHHHHHH
Confidence 356678999999965 55667777755555444
No 127
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=21.07 E-value=3.9e+02 Score=20.54 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=42.1
Q ss_pred CCceeeEeecCCCCCCCChHHHHHHHHhcCcCeEEeeCCCHHHHHHhhCCCceEEecCCcchHHHhhhChHHHHHHHHhh
Q 046740 31 TSAQIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAESNTWVQNN 110 (171)
Q Consensus 31 ~~~~iGVnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gsgI~v~v~vpN~~l~~lAss~~~A~~WV~~n 110 (171)
....|-|.-...|..+|...+|-+.|+++||.--++.-- +.++.+-..-++++ ..|++.+++.
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~---------~~~~~irf~~~~~Q--------l~Ak~vL~~~ 96 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE---------NDSLLIRFDSPEQS--------AAAKEVLDRT 96 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee---------CCEEEEEECCHHHH--------HHHHHHHHHH
Confidence 445577776656666799999999999999976555321 22444444333322 4477777777
Q ss_pred ccc
Q 046740 111 VQN 113 (171)
Q Consensus 111 V~p 113 (171)
+-+
T Consensus 97 L~~ 99 (127)
T PRK10629 97 LPH 99 (127)
T ss_pred cCC
Confidence 653
No 128
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.85 E-value=2.6e+02 Score=25.43 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=48.5
Q ss_pred ecCCCCCCCChHHHHHHHHhcCcCeEEeeC-----CCHHHHHHhhCCC---ceEEecC--Cc-chHHHhhhCh-----HH
Q 046740 39 YGMCGNNLPSKPDVIALCYQNNIRRMRIYD-----PNREALEALRGSN---IEVMLGL--PN-NDLRRIASNQ-----AE 102 (171)
Q Consensus 39 yG~~g~nLPsp~~Vv~Llks~~I~~vRiyd-----~d~~vL~Al~gsg---I~v~v~v--pN-~~l~~lAss~-----~~ 102 (171)
||.--.+.|...+..++++..++.++|+.. -+++.+++++..| -.+.+++ .+ +.|..+.... ..
T Consensus 197 yG~d~~~~~~~~~Ll~~l~~~~i~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~ 276 (440)
T PRK14334 197 YGVDQPGFPSFAELLRLVGASGIPRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLE 276 (440)
T ss_pred cccCCCCcCCHHHHHHHHHhcCCcEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHH
Confidence 653222346777888888777888899843 3577999998865 3455666 32 3344444322 23
Q ss_pred HHHHHHhhccccCCCceEE-EEEec
Q 046740 103 SNTWVQNNVQNFANNVKFK-YIAVG 126 (171)
Q Consensus 103 A~~WV~~nV~py~p~~~I~-~IaVG 126 (171)
+-.++++. .|+..+. .+.+|
T Consensus 277 ~v~~lr~~----~~~i~i~~d~IvG 297 (440)
T PRK14334 277 RIAEIREA----LPDVVLSTDIIVG 297 (440)
T ss_pred HHHHHHHh----CCCcEEEEeEEEE
Confidence 33444443 3444432 46667
No 129
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=20.83 E-value=1.8e+02 Score=25.97 Aligned_cols=89 Identities=24% Similarity=0.296 Sum_probs=49.8
Q ss_pred eeEeecCCCCCCCChHHHHHHHHh----cCcCeEEeeC-----CCHHHHHHhhCCC---ceEEecC--Cc-chHHHhhhC
Q 046740 35 IVVCYGMCGNNLPSKPDVIALCYQ----NNIRRMRIYD-----PNREALEALRGSN---IEVMLGL--PN-NDLRRIASN 99 (171)
Q Consensus 35 iGVnyG~~g~nLPsp~~Vv~Llks----~~I~~vRiyd-----~d~~vL~Al~gsg---I~v~v~v--pN-~~l~~lAss 99 (171)
+|.|.+..|++++......+|++. .++.++|+-. -|++.|++++..| ..+.+|+ .+ +.+..+...
T Consensus 190 ~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~R~ 269 (414)
T TIGR01579 190 TGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMRRK 269 (414)
T ss_pred eeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcCCC
Confidence 466767666665434455556553 2567788752 4567899998765 3566666 33 346556432
Q ss_pred h-----HHHHHHHHhhccccCCCceEE-EEEecC
Q 046740 100 Q-----AESNTWVQNNVQNFANNVKFK-YIAVGN 127 (171)
Q Consensus 100 ~-----~~A~~WV~~nV~py~p~~~I~-~IaVGN 127 (171)
. ..+-.++++. .|+..+. ++.+|-
T Consensus 270 ~~~~~~~~~v~~l~~~----~~gi~i~~~~IvG~ 299 (414)
T TIGR01579 270 YTRDDFLKLVNKLRSV----RPDYAFGTDIIVGF 299 (414)
T ss_pred CCHHHHHHHHHHHHHh----CCCCeeeeeEEEEC
Confidence 2 3344444442 2344443 467773
No 130
>PRK12677 xylose isomerase; Provisional
Probab=20.82 E-value=2.3e+02 Score=25.59 Aligned_cols=43 Identities=12% Similarity=0.083 Sum_probs=34.2
Q ss_pred ChHHHHHHHHhcCcCeEEeeCCC---------------HHHHHHhhCCCceEEecCCc
Q 046740 48 SKPDVIALCYQNNIRRMRIYDPN---------------REALEALRGSNIEVMLGLPN 90 (171)
Q Consensus 48 sp~~Vv~Llks~~I~~vRiyd~d---------------~~vL~Al~gsgI~v~v~vpN 90 (171)
++.+.++.+++.|+..|-+++.+ ..+.++++.+|++|..-.+|
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n 89 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTN 89 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecC
Confidence 78999999999999999998531 24677888999998754444
No 131
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=20.81 E-value=1.2e+02 Score=24.03 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=13.4
Q ss_pred ccccCCCc---eEEEEEecCCCCC
Q 046740 111 VQNFANNV---KFKYIAVGNEAKP 131 (171)
Q Consensus 111 V~py~p~~---~I~~IaVGNEv~~ 131 (171)
+++|.|.. .+|.++||+|++.
T Consensus 80 ~Q~fI~~~~g~d~Rv~Vig~~vv~ 103 (190)
T PF08443_consen 80 VQEFIPKDGGRDLRVYVIGGKVVG 103 (190)
T ss_dssp EEE----SS---EEEEEETTEEEE
T ss_pred EeccccCCCCcEEEEEEECCEEEE
Confidence 47898865 5999999999874
No 132
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=20.69 E-value=94 Score=28.48 Aligned_cols=57 Identities=19% Similarity=0.370 Sum_probs=39.8
Q ss_pred HHHHHhcCcCeEEeeCCCHHHHHHhh-----------CCCceEE---------------e-----cCCcchHHHhhhC-h
Q 046740 53 IALCYQNNIRRMRIYDPNREALEALR-----------GSNIEVM---------------L-----GLPNNDLRRIASN-Q 100 (171)
Q Consensus 53 v~Llks~~I~~vRiyd~d~~vL~Al~-----------gsgI~v~---------------v-----~vpN~~l~~lAss-~ 100 (171)
-||-+..|. +||+|--|...++-+. ..||+|. | .+|.+-+..++.. +
T Consensus 22 rqLa~e~g~-~VrLwvDdl~af~~i~P~~d~~~~~q~~~gV~I~~W~~~~~~~~p~dVVIEAFaCeLP~~y~~~ma~~~~ 100 (371)
T TIGR03837 22 RQLAAEHGH-QVRLWVDDLSAFARLCPEVDPDAGVQLVAGVEIRHWRAPFPDLAPADVVIEAFACELPPEYLAAMAARGS 100 (371)
T ss_pred HHHHHHhCC-EEEEEECCHHHHHHhCCCCCcchhhcccCCeEEEECCCccccCCCCcEEEEeeccCCcHHHHHHHHhCCC
Confidence 456666788 9999988888887773 2466652 2 2466777787632 2
Q ss_pred ---------HHHHHHHHhh
Q 046740 101 ---------AESNTWVQNN 110 (171)
Q Consensus 101 ---------~~A~~WV~~n 110 (171)
-+|++||...
T Consensus 101 ~PvWiNLEYLSAE~WVe~~ 119 (371)
T TIGR03837 101 KPVWINLEYLSAEDWVEGC 119 (371)
T ss_pred CCeEEEhhhcchhHHHHHh
Confidence 3799999986
No 133
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=20.63 E-value=1.7e+02 Score=30.08 Aligned_cols=45 Identities=20% Similarity=0.337 Sum_probs=37.4
Q ss_pred CCCCChHHHHHHHHhcCcCeEEeeCCC-----HHHHHHhhCCCceEEecC
Q 046740 44 NNLPSKPDVIALCYQNNIRRMRIYDPN-----REALEALRGSNIEVMLGL 88 (171)
Q Consensus 44 ~nLPsp~~Vv~Llks~~I~~vRiyd~d-----~~vL~Al~gsgI~v~v~v 88 (171)
|-.-+|++.++..|.+|++.+-|-|.| .+..++.+..||+.++|+
T Consensus 16 Dg~~~~~elv~~Ak~~G~~avAITDh~~l~G~~~f~~~a~~~gIkpIiG~ 65 (973)
T PRK07135 16 SSTIKLDSLIKYAKENNLKTLVLTDHNNMFGVPKFYKLCKKNNIKPIIGL 65 (973)
T ss_pred ccCCCHHHHHHHHHHcCCCEEEEecCCcHHhHHHHHHHHHHcCCeEEEeE
Confidence 344688999999999999999999877 556777788899888775
No 134
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=20.61 E-value=1.3e+02 Score=26.59 Aligned_cols=65 Identities=6% Similarity=-0.036 Sum_probs=35.3
Q ss_pred EeecCCCCCCCChHHHHHHHHhcCcCeE--------------EeeCCCHHHHHHhhCCCceEEecCCcchHHHhhhChHH
Q 046740 37 VCYGMCGNNLPSKPDVIALCYQNNIRRM--------------RIYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAE 102 (171)
Q Consensus 37 VnyG~~g~nLPsp~~Vv~Llks~~I~~v--------------Riyd~d~~vL~Al~gsgI~v~v~vpN~~l~~lAss~~~ 102 (171)
.+||.+- .-.+|++-|+++|+.-+ |-....|++.+.++..|++++ +.-+|-+..-+..
T Consensus 34 ytlG~iI----HN~~vv~~L~~~GV~~v~~~~~v~~~~~ViirAHGv~~~~~~~~~~~g~~vi----DaTCP~V~k~~~~ 105 (298)
T PRK01045 34 YVRHEIV----HNRYVVERLEKKGAIFVEELDEVPDGAIVIFSAHGVSPAVREEAKERGLTVI----DATCPLVTKVHKE 105 (298)
T ss_pred EEEecCc----cCHHHHHHHHHCCCEEecCcccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEE----eCCCccchHHHHH
Confidence 4555433 33567777777777333 333455667777777777764 2234444333444
Q ss_pred HHHHHHh
Q 046740 103 SNTWVQN 109 (171)
Q Consensus 103 A~~WV~~ 109 (171)
++.+.++
T Consensus 106 v~~~~~~ 112 (298)
T PRK01045 106 VARMSRE 112 (298)
T ss_pred HHHHHhC
Confidence 5554443
No 135
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=20.42 E-value=2.5e+02 Score=20.91 Aligned_cols=43 Identities=5% Similarity=-0.006 Sum_probs=33.7
Q ss_pred CCceeeEeecCCCCCCCChHHHHHHHHhcCcCeEEeeCCCHHHHHHhhCC
Q 046740 31 TSAQIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRGS 80 (171)
Q Consensus 31 ~~~~iGVnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd~d~~vL~Al~gs 80 (171)
....|||+.+ +++++.+..++++++---+.|++..+.+++.-.
T Consensus 64 ~v~vi~Is~d-------~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 106 (154)
T PRK09437 64 GVVVLGISTD-------KPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVW 106 (154)
T ss_pred CCEEEEEcCC-------CHHHHHHHHHHhCCCCeEEECCCchHHHHhCCC
Confidence 4667899863 468888899999988777889998888887533
No 136
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=20.32 E-value=2.2e+02 Score=23.39 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=37.4
Q ss_pred CceeeEeecCCCCCCCChHHHHHHHHhcCcCeEEeeC-CCHHHHHHhhC-CCceEEe
Q 046740 32 SAQIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYD-PNREALEALRG-SNIEVML 86 (171)
Q Consensus 32 ~~~iGVnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd-~d~~vL~Al~g-sgI~v~v 86 (171)
...|||=.. ++++++.++++..+++-|.|.. -+++-+++|+. .+++++-
T Consensus 55 i~~VgVf~~------~~~~~i~~~~~~~~~d~vQLHg~e~~~~~~~l~~~~~~~iik 105 (210)
T PRK01222 55 VKVVGVFVN------ASDEEIDEIVETVPLDLLQLHGDETPEFCRQLKRRYGLPVIK 105 (210)
T ss_pred CCEEEEEeC------CCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhcCCcEEE
Confidence 456777665 6889999999999999999984 46777788875 3566653
No 137
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=20.32 E-value=3e+02 Score=22.87 Aligned_cols=66 Identities=14% Similarity=0.250 Sum_probs=46.4
Q ss_pred ChHHHHHHHHhcCcCeEEeeCCC----HHHHHHhhC--CCceEEecCCcchHHHhhhChHHHHHHHHhhccccCCCceEE
Q 046740 48 SKPDVIALCYQNNIRRMRIYDPN----REALEALRG--SNIEVMLGLPNNDLRRIASNQAESNTWVQNNVQNFANNVKFK 121 (171)
Q Consensus 48 sp~~Vv~Llks~~I~~vRiyd~d----~~vL~Al~g--sgI~v~v~vpN~~l~~lAss~~~A~~WV~~nV~py~p~~~I~ 121 (171)
.|+|+.+.+ +.|.+-||+|=++ +.-+++|++ .++++|-+ .-+ +++...+|++.-..
T Consensus 110 TptEi~~A~-~~Ga~~vKlFPA~~~GG~~yikal~~plp~i~~~pt---GGV-----~~~N~~~~l~aGa~--------- 171 (204)
T TIGR01182 110 TPSEIMLAL-ELGITALKLFPAEVSGGVKMLKALAGPFPQVRFCPT---GGI-----NLANVRDYLAAPNV--------- 171 (204)
T ss_pred CHHHHHHHH-HCCCCEEEECCchhcCCHHHHHHHhccCCCCcEEec---CCC-----CHHHHHHHHhCCCE---------
Confidence 788877766 4689999999766 788999987 56666532 222 44667778775433
Q ss_pred EEEecCCCCC
Q 046740 122 YIAVGNEAKP 131 (171)
Q Consensus 122 ~IaVGNEv~~ 131 (171)
.+.+|+..++
T Consensus 172 ~vg~Gs~L~~ 181 (204)
T TIGR01182 172 ACGGGSWLVP 181 (204)
T ss_pred EEEEChhhcC
Confidence 5677888775
No 138
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=20.30 E-value=3.5e+02 Score=19.84 Aligned_cols=51 Identities=22% Similarity=0.366 Sum_probs=30.4
Q ss_pred CCCCCCChHHHHHHHHhcCcCeEEeeCCCH-------HHHHHhhCC---CceEEec--CCcchH
Q 046740 42 CGNNLPSKPDVIALCYQNNIRRMRIYDPNR-------EALEALRGS---NIEVMLG--LPNNDL 93 (171)
Q Consensus 42 ~g~nLPsp~~Vv~Llks~~I~~vRiyd~d~-------~vL~Al~gs---gI~v~v~--vpN~~l 93 (171)
+|-+.| ++++++..+..+-+-|=|.-.+. ++++.|+.. ++.+++| .|+++.
T Consensus 33 lG~~vp-~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~ 95 (122)
T cd02071 33 TGLRQT-PEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDY 95 (122)
T ss_pred CCCCCC-HHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHH
Confidence 455544 45777777777777776664443 245555544 5667777 554443
No 139
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=20.28 E-value=1.9e+02 Score=19.88 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=16.5
Q ss_pred EeecCCCCCCCChHHHHHHHHhcCcCeEEeeCC
Q 046740 37 VCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDP 69 (171)
Q Consensus 37 VnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd~ 69 (171)
|+|+..|. .....+..|+..|.++|++++-
T Consensus 69 v~~c~~g~---~s~~~a~~L~~~G~~~v~~l~G 98 (105)
T cd01525 69 VIVSHSHK---HAALFAAFLVKCGVPRVCILDG 98 (105)
T ss_pred EEEeCCCc---cHHHHHHHHHHcCCCCEEEEeC
Confidence 55554443 2345555666667666665543
No 140
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=20.14 E-value=87 Score=24.15 Aligned_cols=26 Identities=8% Similarity=0.143 Sum_probs=22.2
Q ss_pred CCCChHHHHHHHHhcCcCeEEeeCCC
Q 046740 45 NLPSKPDVIALCYQNNIRRMRIYDPN 70 (171)
Q Consensus 45 nLPsp~~Vv~Llks~~I~~vRiyd~d 70 (171)
+.|+|++..+++++.|.+.++.+.-.
T Consensus 124 ~f~~~~el~~ll~~aGF~~~~~~~~~ 149 (160)
T PLN02232 124 GYLTGEELETLALEAGFSSACHYEIS 149 (160)
T ss_pred HCcCHHHHHHHHHHcCCCcceEEECc
Confidence 57899999999999999998876543
No 141
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=20.01 E-value=1.2e+02 Score=26.42 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=33.9
Q ss_pred CCceeeEeecCCCCCCCChHHHHHHHHhcCcCeEEeeCCCHHHHHHhhC----CCceEEec
Q 046740 31 TSAQIVVCYGMCGNNLPSKPDVIALCYQNNIRRMRIYDPNREALEALRG----SNIEVMLG 87 (171)
Q Consensus 31 ~~~~iGVnyG~~g~nLPsp~~Vv~Llks~~I~~vRiyd~d~~vL~Al~g----sgI~v~v~ 87 (171)
....+|+ +|.-.-...++-.+..-..+.+|++||.+++-.++|+. .|+++.+.
T Consensus 127 ~~~~lgi----iG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~ 183 (325)
T TIGR02371 127 DSSVLGI----IGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAA 183 (325)
T ss_pred CCCEEEE----ECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEe
Confidence 4455554 34444455555555555679999999999998777653 46665543
Done!