Query 046742
Match_columns 769
No_of_seqs 364 out of 3736
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 04:04:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.9E-85 1.5E-89 743.9 43.5 744 2-762 101-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.9E-60 6.4E-65 573.1 46.9 662 18-731 135-913 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.5E-41 7.6E-46 350.1 17.5 265 61-326 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 3.1E-21 6.6E-26 234.5 16.4 321 390-740 116-470 (968)
5 PLN00113 leucine-rich repeat r 99.8 6.7E-21 1.4E-25 231.5 16.8 344 389-759 137-512 (968)
6 PLN03210 Resistant to P. syrin 99.8 2.5E-18 5.4E-23 209.1 16.4 323 392-746 532-905 (1153)
7 KOG0444 Cytoskeletal regulator 99.8 9.4E-21 2E-25 196.5 -5.4 313 372-727 34-378 (1255)
8 KOG4194 Membrane glycoprotein 99.7 3.7E-19 8.1E-24 183.8 2.4 130 390-521 100-232 (873)
9 KOG0444 Cytoskeletal regulator 99.7 3.5E-20 7.5E-25 192.4 -5.4 300 388-733 28-350 (1255)
10 KOG4194 Membrane glycoprotein 99.7 6.2E-19 1.3E-23 182.2 1.9 308 381-735 113-429 (873)
11 KOG0472 Leucine-rich repeat pr 99.6 1.2E-17 2.7E-22 165.4 -2.8 118 386-506 200-317 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 1.9E-18 4.2E-23 171.1 -12.7 128 389-522 180-309 (565)
13 PRK15387 E3 ubiquitin-protein 99.5 4E-14 8.6E-19 160.0 14.2 133 372-523 203-335 (788)
14 KOG0618 Serine/threonine phosp 99.5 4.9E-16 1.1E-20 169.7 -4.0 102 392-495 45-147 (1081)
15 KOG0617 Ras suppressor protein 99.5 1.6E-15 3.4E-20 133.3 -5.0 165 381-556 22-189 (264)
16 KOG0617 Ras suppressor protein 99.4 4.5E-15 9.7E-20 130.5 -4.3 168 405-611 24-192 (264)
17 PRK15370 E3 ubiquitin-protein 99.4 5.9E-13 1.3E-17 151.6 11.4 116 394-523 180-296 (754)
18 KOG0618 Serine/threonine phosp 99.4 1.2E-14 2.6E-19 159.0 -3.1 238 391-659 198-437 (1081)
19 PRK00411 cdc6 cell division co 99.4 3.7E-11 8.1E-16 130.6 22.0 287 56-344 30-357 (394)
20 PRK04841 transcriptional regul 99.4 5.3E-11 1.1E-15 144.4 24.5 288 49-364 7-332 (903)
21 PF01637 Arch_ATPase: Archaeal 99.3 1.7E-12 3.6E-17 130.5 7.2 195 58-258 1-233 (234)
22 TIGR03015 pepcterm_ATPase puta 99.3 3.9E-10 8.4E-15 115.8 23.1 182 74-263 40-242 (269)
23 PRK15370 E3 ubiquitin-protein 99.3 7.4E-12 1.6E-16 142.8 10.0 239 376-722 184-426 (754)
24 TIGR02928 orc1/cdc6 family rep 99.3 9.9E-10 2.2E-14 118.2 26.0 289 56-345 15-350 (365)
25 PRK15387 E3 ubiquitin-protein 99.3 1.4E-11 3.1E-16 139.6 11.9 259 394-738 203-461 (788)
26 KOG4658 Apoptotic ATPase [Sign 99.3 3.7E-12 8E-17 147.5 6.3 315 384-730 537-866 (889)
27 KOG4237 Extracellular matrix p 99.3 2.2E-13 4.8E-18 135.5 -3.7 148 373-522 49-200 (498)
28 COG2909 MalT ATP-dependent tra 99.2 3.6E-09 7.7E-14 116.6 22.0 296 46-366 9-340 (894)
29 TIGR00635 ruvB Holliday juncti 99.1 3.4E-09 7.4E-14 110.9 20.2 267 56-348 4-292 (305)
30 PRK00080 ruvB Holliday junctio 99.1 2.7E-09 6E-14 112.2 19.5 267 55-346 24-311 (328)
31 PF05729 NACHT: NACHT domain 99.1 7.1E-10 1.5E-14 104.7 11.0 141 78-227 1-163 (166)
32 PF14580 LRR_9: Leucine-rich r 99.1 1.2E-10 2.7E-15 108.1 4.9 104 390-496 17-124 (175)
33 KOG4237 Extracellular matrix p 99.0 5.7E-12 1.2E-16 125.6 -5.1 120 400-523 54-177 (498)
34 PF14580 LRR_9: Leucine-rich r 99.0 6.2E-10 1.3E-14 103.4 6.4 141 400-548 5-148 (175)
35 COG2256 MGS1 ATPase related to 99.0 4.4E-09 9.6E-14 106.4 12.5 174 52-255 20-208 (436)
36 PTZ00112 origin recognition co 99.0 2.8E-08 6.1E-13 110.4 19.7 205 56-263 755-986 (1164)
37 cd00116 LRR_RI Leucine-rich re 98.9 1.3E-09 2.9E-14 115.1 4.8 42 434-475 77-121 (319)
38 PRK13342 recombination factor 98.8 4E-08 8.7E-13 106.6 14.1 178 53-260 9-197 (413)
39 PRK06893 DNA replication initi 98.8 2.3E-08 5.1E-13 99.1 11.2 152 76-260 38-204 (229)
40 TIGR03420 DnaA_homol_Hda DnaA 98.8 3.7E-08 8E-13 98.2 12.4 173 56-261 15-203 (226)
41 KOG2028 ATPase related to the 98.8 5.1E-08 1.1E-12 96.7 12.8 174 56-254 138-331 (554)
42 KOG1259 Nischarin, modulator o 98.7 1.7E-09 3.7E-14 104.2 0.3 135 388-527 280-416 (490)
43 COG3899 Predicted ATPase [Gene 98.7 2E-07 4.4E-12 109.0 17.3 294 57-362 1-384 (849)
44 PF05496 RuvB_N: Holliday junc 98.7 3.5E-07 7.7E-12 86.8 14.4 178 52-263 20-225 (233)
45 PTZ00202 tuzin; Provisional 98.7 1.4E-06 3E-11 90.2 19.4 166 52-227 258-434 (550)
46 PRK12402 replication factor C 98.7 2.4E-07 5.3E-12 98.5 14.8 196 56-257 15-224 (337)
47 cd00116 LRR_RI Leucine-rich re 98.7 1.7E-08 3.6E-13 106.7 5.4 158 393-553 52-234 (319)
48 PRK07003 DNA polymerase III su 98.7 3.4E-07 7.3E-12 101.7 15.5 193 56-261 16-223 (830)
49 COG1474 CDC6 Cdc6-related prot 98.7 1.4E-06 3.1E-11 91.6 19.1 197 56-259 17-238 (366)
50 PRK14949 DNA polymerase III su 98.7 3.9E-07 8.4E-12 103.3 15.7 179 56-258 16-219 (944)
51 PRK14961 DNA polymerase III su 98.7 5.5E-07 1.2E-11 95.9 16.0 179 55-256 15-217 (363)
52 KOG0532 Leucine-rich repeat (L 98.6 9.5E-10 2.1E-14 115.0 -5.2 125 394-523 77-202 (722)
53 cd00009 AAA The AAA+ (ATPases 98.6 2.2E-07 4.8E-12 85.6 10.8 123 59-198 1-131 (151)
54 PRK00440 rfc replication facto 98.6 9.8E-07 2.1E-11 93.1 16.4 179 55-256 16-200 (319)
55 PLN03025 replication factor C 98.6 3.8E-07 8.2E-12 95.6 12.9 181 54-255 11-196 (319)
56 PF13173 AAA_14: AAA domain 98.6 9.6E-08 2.1E-12 85.4 7.2 120 77-219 2-127 (128)
57 KOG3207 Beta-tubulin folding c 98.6 8.8E-09 1.9E-13 104.7 0.3 156 391-553 120-284 (505)
58 PF13401 AAA_22: AAA domain; P 98.6 1.1E-07 2.4E-12 85.7 7.4 117 76-196 3-125 (131)
59 PRK14960 DNA polymerase III su 98.6 5E-07 1.1E-11 99.3 13.5 190 56-256 15-216 (702)
60 PRK05564 DNA polymerase III su 98.6 1.4E-06 2.9E-11 91.2 15.9 178 56-259 4-190 (313)
61 PF13191 AAA_16: AAA ATPase do 98.6 1.5E-07 3.2E-12 90.6 7.8 45 57-101 1-48 (185)
62 KOG0532 Leucine-rich repeat (L 98.6 5.1E-09 1.1E-13 109.6 -2.6 132 410-554 117-248 (722)
63 PRK14963 DNA polymerase III su 98.5 1.1E-06 2.5E-11 96.4 15.0 195 56-256 14-214 (504)
64 PRK12323 DNA polymerase III su 98.5 8E-07 1.7E-11 97.5 13.4 194 56-259 16-225 (700)
65 PRK04195 replication factor C 98.5 1E-06 2.2E-11 97.7 14.4 177 54-258 12-201 (482)
66 PRK08727 hypothetical protein; 98.5 6.3E-07 1.4E-11 89.0 11.5 168 56-256 19-201 (233)
67 PRK14962 DNA polymerase III su 98.5 1.4E-06 3E-11 95.0 14.9 187 54-263 12-223 (472)
68 PF14516 AAA_35: AAA-like doma 98.5 4.1E-05 8.8E-10 80.4 25.0 202 54-266 9-246 (331)
69 PRK08084 DNA replication initi 98.5 1E-06 2.2E-11 87.7 12.4 171 56-259 22-209 (235)
70 PRK14957 DNA polymerase III su 98.5 1.6E-06 3.5E-11 95.4 14.8 184 56-262 16-224 (546)
71 PRK14956 DNA polymerase III su 98.5 8.4E-07 1.8E-11 94.9 12.3 190 55-255 17-218 (484)
72 PRK07471 DNA polymerase III su 98.5 3E-06 6.5E-11 89.4 16.3 199 52-260 15-239 (365)
73 KOG1259 Nischarin, modulator o 98.5 1.3E-08 2.8E-13 98.2 -1.4 134 410-554 280-413 (490)
74 PRK13341 recombination factor 98.5 1.7E-06 3.6E-11 98.8 14.5 171 54-254 26-212 (725)
75 PLN03150 hypothetical protein; 98.5 3.7E-07 8.1E-12 104.2 9.0 105 416-521 420-526 (623)
76 PRK07994 DNA polymerase III su 98.5 1.7E-06 3.6E-11 96.7 13.8 193 55-258 15-219 (647)
77 PF13855 LRR_8: Leucine rich r 98.5 1.8E-07 3.8E-12 71.3 4.3 60 414-474 1-61 (61)
78 TIGR02903 spore_lon_C ATP-depe 98.5 2.8E-06 6E-11 96.2 15.5 204 54-262 152-398 (615)
79 PRK14964 DNA polymerase III su 98.5 2E-06 4.3E-11 93.3 13.6 180 55-256 12-214 (491)
80 PRK06645 DNA polymerase III su 98.4 4E-06 8.6E-11 91.7 15.9 194 55-256 20-226 (507)
81 cd01128 rho_factor Transcripti 98.4 5.4E-07 1.2E-11 89.4 8.2 93 76-171 15-115 (249)
82 PRK14958 DNA polymerase III su 98.4 2E-06 4.4E-11 94.7 13.5 178 56-256 16-217 (509)
83 COG4886 Leucine-rich repeat (L 98.4 1.7E-07 3.7E-12 102.1 5.0 121 397-521 98-220 (394)
84 PRK09087 hypothetical protein; 98.4 4.4E-06 9.5E-11 82.3 14.4 161 76-278 43-221 (226)
85 KOG3207 Beta-tubulin folding c 98.4 7.3E-08 1.6E-12 98.2 1.6 64 411-475 118-185 (505)
86 PRK14951 DNA polymerase III su 98.4 3.9E-06 8.4E-11 93.7 15.2 193 55-257 15-223 (618)
87 TIGR02397 dnaX_nterm DNA polym 98.4 5.5E-06 1.2E-10 88.8 16.0 182 56-260 14-219 (355)
88 PRK08691 DNA polymerase III su 98.4 2.3E-06 5.1E-11 95.1 13.0 179 55-257 15-218 (709)
89 TIGR01242 26Sp45 26S proteasom 98.4 2.1E-06 4.6E-11 91.8 12.4 169 57-253 123-328 (364)
90 PRK07940 DNA polymerase III su 98.4 4.8E-06 1E-10 88.6 14.8 172 56-259 5-213 (394)
91 KOG4341 F-box protein containi 98.4 1.9E-08 4.2E-13 101.7 -3.2 107 414-520 138-252 (483)
92 PRK05896 DNA polymerase III su 98.4 3.6E-06 7.9E-11 92.7 13.7 196 55-261 15-223 (605)
93 PRK14955 DNA polymerase III su 98.4 5E-06 1.1E-10 89.7 13.8 197 55-256 15-225 (397)
94 PRK08903 DnaA regulatory inact 98.4 3.9E-06 8.4E-11 83.5 12.1 171 56-263 18-203 (227)
95 PRK14970 DNA polymerase III su 98.4 9.7E-06 2.1E-10 87.0 16.0 178 55-254 16-204 (367)
96 PRK14969 DNA polymerase III su 98.3 7E-06 1.5E-10 91.2 14.8 183 56-261 16-223 (527)
97 TIGR00678 holB DNA polymerase 98.3 8.6E-06 1.9E-10 78.4 13.7 161 67-255 3-187 (188)
98 PRK09112 DNA polymerase III su 98.3 4.3E-06 9.3E-11 87.7 12.4 200 52-260 19-241 (351)
99 PLN03150 hypothetical protein; 98.3 1.5E-06 3.2E-11 99.3 9.3 110 393-502 419-532 (623)
100 PRK09111 DNA polymerase III su 98.3 7.8E-06 1.7E-10 91.5 14.8 196 55-259 23-233 (598)
101 COG4886 Leucine-rich repeat (L 98.3 4.3E-07 9.3E-12 98.9 4.7 156 386-552 110-267 (394)
102 PF13855 LRR_8: Leucine rich r 98.3 5.2E-07 1.1E-11 68.7 3.5 56 439-495 2-59 (61)
103 PRK14959 DNA polymerase III su 98.3 7.8E-06 1.7E-10 90.6 14.0 196 56-263 16-225 (624)
104 PRK05642 DNA replication initi 98.3 1.1E-05 2.4E-10 80.2 13.7 150 78-260 46-209 (234)
105 COG2255 RuvB Holliday junction 98.3 1.3E-05 2.8E-10 77.8 13.3 176 54-263 24-227 (332)
106 KOG0989 Replication factor C, 98.3 3.5E-06 7.5E-11 82.6 8.8 192 51-259 31-231 (346)
107 PRK14952 DNA polymerase III su 98.3 1.6E-05 3.4E-10 88.5 15.1 197 56-263 13-224 (584)
108 PF00308 Bac_DnaA: Bacterial d 98.2 5.4E-06 1.2E-10 81.3 10.1 161 77-259 34-208 (219)
109 PRK07133 DNA polymerase III su 98.2 1.7E-05 3.7E-10 89.3 15.0 189 56-260 18-221 (725)
110 PRK14954 DNA polymerase III su 98.2 1.6E-05 3.5E-10 89.1 14.8 200 56-259 16-229 (620)
111 PRK03992 proteasome-activating 98.2 2.5E-05 5.4E-10 83.9 15.5 169 57-253 132-337 (389)
112 PRK07764 DNA polymerase III su 98.2 2E-05 4.2E-10 91.4 15.1 179 56-261 15-224 (824)
113 PRK08451 DNA polymerase III su 98.2 2.7E-05 6E-10 85.3 15.5 183 55-259 13-218 (535)
114 TIGR02881 spore_V_K stage V sp 98.2 6.7E-06 1.5E-10 83.5 10.1 154 57-229 7-193 (261)
115 KOG2227 Pre-initiation complex 98.2 0.0001 2.2E-09 76.6 18.3 197 55-260 149-369 (529)
116 PRK06305 DNA polymerase III su 98.2 3.2E-05 7E-10 84.3 15.5 181 56-259 17-223 (451)
117 COG3267 ExeA Type II secretory 98.2 7.6E-05 1.6E-09 71.8 15.7 182 75-261 49-247 (269)
118 TIGR03345 VI_ClpV1 type VI sec 98.2 1.3E-05 2.8E-10 94.1 13.0 183 54-253 185-390 (852)
119 PRK09376 rho transcription ter 98.2 6.1E-06 1.3E-10 85.4 8.9 90 78-171 170-268 (416)
120 PRK14950 DNA polymerase III su 98.2 3.9E-05 8.4E-10 86.9 16.1 192 56-258 16-220 (585)
121 KOG2120 SCF ubiquitin ligase, 98.1 1.5E-07 3.1E-12 91.2 -3.2 85 438-523 185-273 (419)
122 PRK14087 dnaA chromosomal repl 98.1 2.3E-05 5E-10 85.4 13.4 184 59-260 119-320 (450)
123 PF05621 TniB: Bacterial TniB 98.1 3.7E-05 7.9E-10 76.9 13.3 197 56-259 34-261 (302)
124 KOG2543 Origin recognition com 98.1 1.8E-05 3.9E-10 80.0 11.1 165 56-226 6-192 (438)
125 PRK14971 DNA polymerase III su 98.1 4.9E-05 1.1E-09 85.8 16.1 177 56-255 17-218 (614)
126 PHA02544 44 clamp loader, smal 98.1 2.6E-05 5.5E-10 82.1 12.8 147 54-225 19-171 (316)
127 TIGR02639 ClpA ATP-dependent C 98.1 1.3E-05 2.7E-10 93.6 11.2 158 55-228 181-359 (731)
128 PRK14948 DNA polymerase III su 98.1 6.2E-05 1.3E-09 85.1 16.1 195 56-259 16-222 (620)
129 PTZ00454 26S protease regulato 98.1 5.6E-05 1.2E-09 80.8 15.0 170 57-253 146-351 (398)
130 PRK14953 DNA polymerase III su 98.1 6.6E-05 1.4E-09 82.4 15.7 181 56-259 16-220 (486)
131 PRK11331 5-methylcytosine-spec 98.1 2.9E-05 6.4E-10 82.3 12.1 69 56-127 175-243 (459)
132 PRK14088 dnaA chromosomal repl 98.1 4.5E-05 9.8E-10 83.1 13.9 176 59-256 109-302 (440)
133 TIGR00767 rho transcription te 98.1 1.2E-05 2.7E-10 83.6 8.9 91 77-171 168-267 (415)
134 TIGR00362 DnaA chromosomal rep 98.0 5.9E-05 1.3E-09 82.0 14.0 177 59-257 114-308 (405)
135 TIGR02880 cbbX_cfxQ probable R 98.0 3.6E-05 7.8E-10 78.8 11.3 154 57-229 23-210 (284)
136 KOG1859 Leucine-rich repeat pr 98.0 3.7E-07 8E-12 98.5 -3.6 126 414-551 164-290 (1096)
137 PRK14965 DNA polymerase III su 98.0 5.8E-05 1.3E-09 85.0 13.6 196 55-261 15-223 (576)
138 PRK06647 DNA polymerase III su 98.0 0.00013 2.7E-09 81.6 16.1 190 56-256 16-217 (563)
139 KOG4341 F-box protein containi 98.0 3.7E-07 8.1E-12 92.6 -3.5 85 411-495 161-252 (483)
140 PTZ00361 26 proteosome regulat 98.0 5.2E-05 1.1E-09 81.5 12.4 169 58-253 185-389 (438)
141 PRK00149 dnaA chromosomal repl 98.0 6.9E-05 1.5E-09 82.5 13.6 199 59-279 126-349 (450)
142 CHL00181 cbbX CbbX; Provisiona 98.0 5.6E-05 1.2E-09 77.3 11.8 154 57-229 24-211 (287)
143 COG3903 Predicted ATPase [Gene 98.0 4.4E-06 9.6E-11 85.7 3.6 271 76-363 13-313 (414)
144 COG1222 RPT1 ATP-dependent 26S 98.0 0.00033 7.1E-09 70.6 16.5 192 60-280 155-393 (406)
145 PRK06620 hypothetical protein; 98.0 4.2E-05 9.1E-10 74.7 10.2 154 58-256 19-186 (214)
146 PRK05563 DNA polymerase III su 97.9 0.0002 4.3E-09 80.4 16.1 190 55-256 15-217 (559)
147 PRK10865 protein disaggregatio 97.9 6.7E-05 1.5E-09 88.5 13.0 156 55-227 177-354 (857)
148 CHL00095 clpC Clp protease ATP 97.9 4.1E-05 8.8E-10 90.5 11.1 178 56-250 179-378 (821)
149 TIGR03346 chaperone_ClpB ATP-d 97.9 9.3E-05 2E-09 87.7 14.1 156 55-227 172-349 (852)
150 PRK10536 hypothetical protein; 97.9 9E-05 2E-09 72.7 11.4 59 53-114 52-110 (262)
151 PRK11034 clpA ATP-dependent Cl 97.9 6.9E-05 1.5E-09 86.3 12.0 156 56-227 186-362 (758)
152 PRK12422 chromosomal replicati 97.9 8.6E-05 1.9E-09 80.7 11.9 151 78-252 142-306 (445)
153 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.4E-10 55.3 3.9 34 463-496 2-35 (44)
154 TIGR03689 pup_AAA proteasome A 97.9 8.1E-05 1.7E-09 81.3 11.3 161 56-229 182-380 (512)
155 PF12799 LRR_4: Leucine Rich r 97.9 2E-05 4.4E-10 54.8 4.2 41 438-479 1-41 (44)
156 KOG4579 Leucine-rich repeat (L 97.9 2.3E-06 5.1E-11 73.4 -0.9 109 394-504 29-141 (177)
157 KOG1859 Leucine-rich repeat pr 97.8 5E-07 1.1E-11 97.6 -6.9 129 390-523 162-292 (1096)
158 KOG2120 SCF ubiquitin ligase, 97.8 1.9E-06 4.2E-11 83.6 -2.2 130 393-522 186-325 (419)
159 KOG0531 Protein phosphatase 1, 97.8 3.4E-06 7.3E-11 92.0 -1.2 105 388-496 91-197 (414)
160 COG0593 DnaA ATPase involved i 97.8 0.00055 1.2E-08 72.1 14.8 149 76-249 112-276 (408)
161 TIGR00602 rad24 checkpoint pro 97.8 0.00012 2.6E-09 82.2 10.2 51 51-101 79-134 (637)
162 TIGR01241 FtsH_fam ATP-depende 97.8 0.00064 1.4E-08 75.9 16.2 171 56-253 55-260 (495)
163 PRK14086 dnaA chromosomal repl 97.7 0.00019 4E-09 79.5 11.5 157 77-255 314-484 (617)
164 PRK05707 DNA polymerase III su 97.7 0.00044 9.5E-09 72.0 13.3 95 158-259 105-203 (328)
165 PF05673 DUF815: Protein of un 97.7 0.0014 2.9E-08 63.7 15.4 50 52-101 23-76 (249)
166 CHL00176 ftsH cell division pr 97.7 0.00094 2E-08 75.7 16.6 169 56-251 183-386 (638)
167 PRK07399 DNA polymerase III su 97.7 0.0008 1.7E-08 69.7 14.7 197 56-259 4-221 (314)
168 smart00382 AAA ATPases associa 97.7 0.00012 2.7E-09 66.5 7.6 88 78-172 3-91 (148)
169 PF10443 RNA12: RNA12 protein; 97.7 0.002 4.4E-08 67.6 16.9 201 61-269 1-288 (431)
170 PRK15386 type III secretion pr 97.6 0.00013 2.8E-09 76.6 7.7 81 391-482 51-135 (426)
171 PF00004 AAA: ATPase family as 97.6 0.00018 4E-09 64.5 7.8 69 80-171 1-70 (132)
172 PRK08769 DNA polymerase III su 97.6 0.0017 3.7E-08 67.0 15.2 178 62-260 10-209 (319)
173 PRK08118 topology modulation p 97.5 0.00018 3.9E-09 67.3 6.7 36 78-113 2-37 (167)
174 PRK15386 type III secretion pr 97.5 0.00016 3.5E-09 75.8 7.0 135 410-575 48-186 (426)
175 KOG1644 U2-associated snRNP A' 97.5 0.00011 2.3E-09 67.9 4.9 82 393-475 43-126 (233)
176 KOG0531 Protein phosphatase 1, 97.5 1.3E-05 2.9E-10 87.4 -1.4 142 375-523 100-245 (414)
177 KOG0733 Nuclear AAA ATPase (VC 97.5 0.0019 4E-08 69.6 14.3 169 56-252 190-395 (802)
178 PF04665 Pox_A32: Poxvirus A32 97.5 0.00032 6.9E-09 68.6 7.9 36 78-116 14-49 (241)
179 KOG2982 Uncharacterized conser 97.5 2.2E-05 4.7E-10 76.5 -0.3 45 681-730 243-287 (418)
180 KOG1909 Ran GTPase-activating 97.5 3.6E-05 7.8E-10 76.9 1.0 162 388-552 26-225 (382)
181 KOG2228 Origin recognition com 97.5 0.00096 2.1E-08 66.7 10.8 169 56-229 24-221 (408)
182 PRK08058 DNA polymerase III su 97.5 0.0018 3.9E-08 68.0 13.6 160 58-226 7-181 (329)
183 COG1373 Predicted ATPase (AAA+ 97.5 0.0017 3.8E-08 69.7 13.7 165 60-259 21-192 (398)
184 KOG3665 ZYG-1-like serine/thre 97.5 8.9E-05 1.9E-09 84.6 4.0 102 393-496 123-231 (699)
185 COG1223 Predicted ATPase (AAA+ 97.4 0.0015 3.2E-08 62.8 11.3 170 56-253 121-319 (368)
186 KOG2982 Uncharacterized conser 97.4 5.1E-05 1.1E-09 74.0 1.5 97 396-495 49-156 (418)
187 KOG0744 AAA+-type ATPase [Post 97.4 0.00091 2E-08 66.3 9.9 83 76-170 176-261 (423)
188 KOG4579 Leucine-rich repeat (L 97.4 3E-05 6.5E-10 66.8 -0.3 87 393-481 54-142 (177)
189 KOG0733 Nuclear AAA ATPase (VC 97.4 0.0042 9.1E-08 67.0 15.3 146 60-228 515-693 (802)
190 PF00448 SRP54: SRP54-type pro 97.4 0.00056 1.2E-08 65.7 8.2 89 77-168 1-92 (196)
191 KOG0730 AAA+-type ATPase [Post 97.4 0.0027 5.8E-08 69.3 13.7 171 56-253 434-637 (693)
192 PRK07261 topology modulation p 97.4 0.00063 1.4E-08 64.0 8.1 67 79-170 2-68 (171)
193 KOG0991 Replication factor C, 97.4 0.00045 9.8E-09 65.1 6.7 64 56-120 27-90 (333)
194 PRK06871 DNA polymerase III su 97.4 0.006 1.3E-07 63.2 15.6 175 63-256 9-200 (325)
195 CHL00195 ycf46 Ycf46; Provisio 97.4 0.0011 2.5E-08 72.5 10.9 173 56-253 228-429 (489)
196 PRK08181 transposase; Validate 97.3 0.00044 9.5E-09 69.6 7.0 78 70-170 101-178 (269)
197 PRK12377 putative replication 97.3 0.0016 3.6E-08 64.7 10.8 75 76-170 100-174 (248)
198 KOG0741 AAA+-type ATPase [Post 97.3 0.0024 5.2E-08 67.5 12.1 160 76-263 537-716 (744)
199 TIGR01243 CDC48 AAA family ATP 97.3 0.0027 5.9E-08 74.5 14.3 171 56-253 453-657 (733)
200 TIGR02640 gas_vesic_GvpN gas v 97.3 0.0056 1.2E-07 62.1 14.7 55 64-126 10-64 (262)
201 COG2812 DnaX DNA polymerase II 97.3 0.002 4.3E-08 70.1 11.9 184 56-255 16-216 (515)
202 KOG1514 Origin recognition com 97.3 0.01 2.2E-07 65.3 17.0 195 57-259 397-621 (767)
203 PF02562 PhoH: PhoH-like prote 97.3 0.00039 8.5E-09 66.4 5.6 128 61-197 5-156 (205)
204 PF13177 DNA_pol3_delta2: DNA 97.3 0.0011 2.3E-08 61.7 8.5 42 60-101 1-43 (162)
205 KOG2035 Replication factor C, 97.3 0.0012 2.5E-08 64.2 8.7 210 56-282 13-261 (351)
206 PRK12608 transcription termina 97.3 0.0024 5.1E-08 66.5 11.6 105 64-170 119-231 (380)
207 TIGR01243 CDC48 AAA family ATP 97.3 0.0021 4.6E-08 75.5 12.7 171 57-254 179-382 (733)
208 PRK08116 hypothetical protein; 97.3 0.00043 9.2E-09 70.2 6.0 102 78-197 115-221 (268)
209 TIGR00763 lon ATP-dependent pr 97.3 0.0032 7E-08 74.1 13.9 46 56-101 320-371 (775)
210 KOG0728 26S proteasome regulat 97.2 0.01 2.2E-07 56.7 14.2 176 59-261 149-365 (404)
211 COG0466 Lon ATP-dependent Lon 97.2 0.0037 7.9E-08 69.0 12.7 158 56-228 323-509 (782)
212 PF07693 KAP_NTPase: KAP famil 97.2 0.007 1.5E-07 63.9 14.6 41 61-101 1-44 (325)
213 KOG0736 Peroxisome assembly fa 97.2 0.0096 2.1E-07 66.1 15.2 142 56-221 672-850 (953)
214 PRK06526 transposase; Provisio 97.1 0.00036 7.9E-09 69.9 3.7 74 76-170 97-170 (254)
215 KOG0743 AAA+-type ATPase [Post 97.1 0.086 1.9E-06 55.6 20.9 152 78-266 236-417 (457)
216 smart00763 AAA_PrkA PrkA AAA d 97.1 0.0015 3.3E-08 67.6 8.2 45 57-101 52-102 (361)
217 PRK06090 DNA polymerase III su 97.1 0.015 3.2E-07 60.1 15.4 176 62-259 9-201 (319)
218 PRK09183 transposase/IS protei 97.1 0.00069 1.5E-08 68.3 5.4 25 77-101 102-126 (259)
219 PRK10787 DNA-binding ATP-depen 97.1 0.0032 7E-08 73.4 11.6 157 56-227 322-506 (784)
220 KOG1909 Ran GTPase-activating 97.1 0.0002 4.3E-09 71.8 1.4 132 391-523 91-254 (382)
221 KOG1644 U2-associated snRNP A' 97.1 0.00096 2.1E-08 61.8 5.5 102 414-519 42-149 (233)
222 PRK07993 DNA polymerase III su 97.0 0.013 2.8E-07 61.4 14.5 178 62-257 8-202 (334)
223 COG0542 clpA ATP-binding subun 97.0 0.003 6.5E-08 71.6 10.3 158 55-227 169-346 (786)
224 PF08423 Rad51: Rad51; InterP 97.0 0.0051 1.1E-07 61.9 10.9 91 77-169 38-143 (256)
225 TIGR02639 ClpA ATP-dependent C 97.0 0.0057 1.2E-07 71.7 12.9 46 56-101 454-508 (731)
226 PRK09361 radB DNA repair and r 97.0 0.0032 6.9E-08 62.5 9.2 45 76-124 22-66 (225)
227 KOG0735 AAA+-type ATPase [Post 97.0 0.0048 1E-07 67.7 10.7 160 76-259 430-616 (952)
228 KOG0731 AAA+-type ATPase conta 97.0 0.011 2.3E-07 66.8 13.7 174 56-256 311-521 (774)
229 PF13207 AAA_17: AAA domain; P 97.0 0.00064 1.4E-08 60.0 3.4 23 79-101 1-23 (121)
230 COG1484 DnaC DNA replication p 96.9 0.0044 9.6E-08 62.2 9.6 91 60-170 87-178 (254)
231 COG1875 NYN ribonuclease and A 96.9 0.0016 3.4E-08 65.9 6.3 131 60-195 228-386 (436)
232 cd01393 recA_like RecA is a b 96.9 0.0077 1.7E-07 59.8 11.4 92 76-169 18-124 (226)
233 PHA00729 NTP-binding motif con 96.9 0.004 8.6E-08 60.3 8.8 35 67-101 7-41 (226)
234 cd01123 Rad51_DMC1_radA Rad51_ 96.9 0.0061 1.3E-07 61.0 10.7 92 76-169 18-125 (235)
235 PRK10865 protein disaggregatio 96.9 0.0055 1.2E-07 72.6 11.5 46 56-101 568-622 (857)
236 PRK00771 signal recognition pa 96.9 0.0071 1.5E-07 65.3 11.1 89 76-168 94-184 (437)
237 COG0542 clpA ATP-binding subun 96.9 0.0022 4.9E-08 72.6 7.5 105 56-171 491-605 (786)
238 PRK07952 DNA replication prote 96.9 0.0075 1.6E-07 59.9 10.3 89 64-171 84-174 (244)
239 COG0470 HolB ATPase involved i 96.8 0.0048 1E-07 65.2 9.6 144 57-218 2-172 (325)
240 cd01394 radB RadB. The archaea 96.8 0.009 2E-07 58.9 10.8 42 76-120 18-59 (218)
241 PRK04132 replication factor C 96.8 0.017 3.6E-07 67.2 14.2 153 82-256 569-728 (846)
242 PF03215 Rad17: Rad17 cell cyc 96.8 0.004 8.6E-08 68.8 8.9 55 56-115 19-78 (519)
243 TIGR02012 tigrfam_recA protein 96.8 0.0032 7E-08 64.8 7.6 87 76-170 54-144 (321)
244 PRK06964 DNA polymerase III su 96.8 0.041 8.8E-07 57.5 15.8 92 158-260 131-226 (342)
245 TIGR02237 recomb_radB DNA repa 96.8 0.005 1.1E-07 60.3 8.7 89 76-169 11-107 (209)
246 TIGR03346 chaperone_ClpB ATP-d 96.8 0.0039 8.6E-08 74.1 9.2 60 56-118 565-633 (852)
247 cd00983 recA RecA is a bacter 96.8 0.0034 7.3E-08 64.7 7.4 87 76-170 54-144 (325)
248 PRK05541 adenylylsulfate kinas 96.8 0.0038 8.2E-08 59.2 7.4 36 76-114 6-41 (176)
249 PRK10733 hflB ATP-dependent me 96.8 0.0099 2.1E-07 68.3 12.0 150 58-230 154-338 (644)
250 TIGR03345 VI_ClpV1 type VI sec 96.8 0.003 6.6E-08 74.5 7.8 46 56-101 566-620 (852)
251 PRK10867 signal recognition pa 96.8 0.0094 2E-07 64.2 10.8 91 76-168 99-192 (433)
252 KOG2004 Mitochondrial ATP-depe 96.7 0.01 2.2E-07 65.4 10.8 157 57-228 412-597 (906)
253 PRK09354 recA recombinase A; P 96.7 0.0047 1E-07 64.1 7.9 87 76-170 59-149 (349)
254 PLN00020 ribulose bisphosphate 96.7 0.0039 8.4E-08 64.2 7.1 27 75-101 146-172 (413)
255 TIGR02238 recomb_DMC1 meiotic 96.7 0.012 2.6E-07 60.9 10.8 59 76-136 95-157 (313)
256 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.0054 1.2E-07 56.1 7.3 117 78-198 3-139 (159)
257 KOG0727 26S proteasome regulat 96.7 0.03 6.5E-07 53.7 12.3 157 60-240 159-352 (408)
258 TIGR00959 ffh signal recogniti 96.7 0.012 2.6E-07 63.4 10.9 91 77-169 99-192 (428)
259 PTZ00494 tuzin-like protein; P 96.7 0.27 5.7E-06 51.9 19.9 163 55-227 370-544 (664)
260 KOG0734 AAA+-type ATPase conta 96.7 0.016 3.4E-07 61.7 11.2 43 59-101 307-361 (752)
261 PRK06696 uridine kinase; Valid 96.7 0.0027 5.8E-08 62.8 5.5 42 60-101 2-46 (223)
262 PRK08939 primosomal protein Dn 96.6 0.01 2.2E-07 61.3 9.8 90 60-170 135-228 (306)
263 KOG3665 ZYG-1-like serine/thre 96.6 0.0012 2.6E-08 75.5 3.3 138 413-551 121-261 (699)
264 cd03115 SRP The signal recogni 96.6 0.007 1.5E-07 57.2 8.0 89 79-170 2-93 (173)
265 COG0464 SpoVK ATPases of the A 96.6 0.034 7.3E-07 62.4 14.7 152 57-231 243-427 (494)
266 PRK14974 cell division protein 96.6 0.014 3.1E-07 60.7 10.7 92 76-170 139-233 (336)
267 PRK04296 thymidine kinase; Pro 96.6 0.0026 5.6E-08 61.0 4.9 114 78-199 3-118 (190)
268 KOG2739 Leucine-rich acidic nu 96.6 0.001 2.2E-08 64.4 2.0 32 393-424 44-75 (260)
269 cd01120 RecA-like_NTPases RecA 96.6 0.012 2.7E-07 54.7 9.4 39 79-120 1-39 (165)
270 KOG1969 DNA replication checkp 96.6 0.0043 9.4E-08 68.3 6.8 73 76-171 325-399 (877)
271 COG4608 AppF ABC-type oligopep 96.5 0.011 2.4E-07 58.1 8.7 122 76-202 38-175 (268)
272 TIGR03499 FlhF flagellar biosy 96.5 0.0099 2.2E-07 60.9 8.9 88 76-168 193-281 (282)
273 KOG2123 Uncharacterized conser 96.5 0.00021 4.6E-09 69.1 -3.2 54 393-448 20-73 (388)
274 PF10236 DAP3: Mitochondrial r 96.5 0.11 2.5E-06 53.8 16.4 49 208-256 258-306 (309)
275 PLN03187 meiotic recombination 96.5 0.022 4.8E-07 59.4 11.2 60 76-136 125-187 (344)
276 TIGR03877 thermo_KaiC_1 KaiC d 96.5 0.017 3.8E-07 57.6 10.1 49 76-129 20-68 (237)
277 KOG1947 Leucine rich repeat pr 96.5 0.00059 1.3E-08 76.5 -0.6 113 411-523 185-308 (482)
278 CHL00095 clpC Clp protease ATP 96.5 0.0088 1.9E-07 71.0 9.1 46 56-101 509-563 (821)
279 cd01133 F1-ATPase_beta F1 ATP 96.5 0.014 2.9E-07 58.6 9.0 92 77-171 69-175 (274)
280 TIGR01425 SRP54_euk signal rec 96.5 0.018 4E-07 61.6 10.5 26 76-101 99-124 (429)
281 PRK11889 flhF flagellar biosyn 96.5 0.025 5.3E-07 59.3 11.1 89 76-169 240-330 (436)
282 KOG2739 Leucine-rich acidic nu 96.5 0.0019 4.1E-08 62.6 2.7 109 411-522 40-155 (260)
283 KOG0735 AAA+-type ATPase [Post 96.4 0.081 1.8E-06 58.5 15.2 171 58-255 669-872 (952)
284 KOG0652 26S proteasome regulat 96.4 0.041 8.9E-07 53.0 11.5 190 50-263 162-391 (424)
285 KOG1947 Leucine rich repeat pr 96.4 0.00087 1.9E-08 75.2 0.4 36 461-496 268-306 (482)
286 PF00154 RecA: recA bacterial 96.4 0.041 8.9E-07 56.6 12.4 96 68-171 41-143 (322)
287 TIGR02239 recomb_RAD51 DNA rep 96.4 0.019 4.2E-07 59.6 10.2 59 76-135 95-156 (316)
288 cd01121 Sms Sms (bacterial rad 96.4 0.013 2.8E-07 62.2 9.0 94 67-169 70-168 (372)
289 PRK11034 clpA ATP-dependent Cl 96.4 0.0032 6.9E-08 72.9 4.8 46 56-101 458-512 (758)
290 PRK08233 hypothetical protein; 96.4 0.011 2.5E-07 56.3 8.0 25 77-101 3-27 (182)
291 COG1102 Cmk Cytidylate kinase 96.4 0.0089 1.9E-07 53.5 6.4 44 79-136 2-45 (179)
292 cd01131 PilT Pilus retraction 96.4 0.0025 5.4E-08 61.6 3.3 109 78-199 2-111 (198)
293 COG2884 FtsE Predicted ATPase 96.4 0.008 1.7E-07 55.4 6.2 26 76-101 27-52 (223)
294 PF13306 LRR_5: Leucine rich r 96.4 0.012 2.5E-07 52.5 7.4 112 393-512 13-128 (129)
295 PRK06067 flagellar accessory p 96.4 0.025 5.3E-07 56.5 10.4 88 76-169 24-130 (234)
296 PRK14722 flhF flagellar biosyn 96.4 0.013 2.8E-07 61.7 8.5 88 77-169 137-225 (374)
297 PRK04301 radA DNA repair and r 96.3 0.036 7.8E-07 58.0 11.8 66 67-134 90-161 (317)
298 KOG2123 Uncharacterized conser 96.3 0.00022 4.9E-09 68.9 -4.2 67 382-448 31-98 (388)
299 PRK15455 PrkA family serine pr 96.3 0.0047 1E-07 67.4 5.2 46 56-101 76-127 (644)
300 PTZ00035 Rad51 protein; Provis 96.3 0.036 7.9E-07 58.1 11.7 67 67-135 106-178 (337)
301 KOG0729 26S proteasome regulat 96.3 0.024 5.2E-07 54.8 9.1 43 59-101 180-235 (435)
302 PF00485 PRK: Phosphoribulokin 96.3 0.036 7.9E-07 53.4 10.8 82 79-163 1-87 (194)
303 COG0572 Udk Uridine kinase [Nu 96.3 0.011 2.5E-07 56.4 7.0 79 76-160 7-85 (218)
304 COG0563 Adk Adenylate kinase a 96.3 0.0092 2E-07 56.2 6.2 23 79-101 2-24 (178)
305 PRK12723 flagellar biosynthesi 96.3 0.023 5.1E-07 60.3 9.9 90 76-169 173-264 (388)
306 PF01695 IstB_IS21: IstB-like 96.3 0.0086 1.9E-07 56.6 6.0 75 76-171 46-120 (178)
307 PRK13765 ATP-dependent proteas 96.3 0.0077 1.7E-07 68.1 6.6 80 50-134 25-104 (637)
308 PRK08699 DNA polymerase III su 96.2 0.058 1.2E-06 56.3 12.6 25 77-101 21-45 (325)
309 PF12775 AAA_7: P-loop contain 96.2 0.0076 1.6E-07 61.2 5.9 57 66-126 23-79 (272)
310 PRK06921 hypothetical protein; 96.2 0.023 5E-07 57.5 9.4 38 76-115 116-153 (266)
311 PRK06547 hypothetical protein; 96.2 0.0068 1.5E-07 56.9 5.1 34 68-101 6-39 (172)
312 PRK12727 flagellar biosynthesi 96.2 0.028 6E-07 61.3 10.2 89 76-169 349-438 (559)
313 KOG0737 AAA+-type ATPase [Post 96.2 0.087 1.9E-06 54.0 13.0 51 56-109 92-156 (386)
314 PRK13531 regulatory ATPase Rav 96.2 0.0075 1.6E-07 65.0 5.8 44 56-101 20-63 (498)
315 COG2607 Predicted ATPase (AAA+ 96.2 0.029 6.4E-07 53.7 9.0 48 54-101 58-109 (287)
316 TIGR00064 ftsY signal recognit 96.2 0.028 6.1E-07 57.1 9.7 91 76-169 71-164 (272)
317 COG1618 Predicted nucleotide k 96.2 0.0055 1.2E-07 54.8 3.9 24 78-101 6-29 (179)
318 COG0465 HflB ATP-dependent Zn 96.2 0.057 1.2E-06 59.8 12.6 172 56-254 150-356 (596)
319 COG1066 Sms Predicted ATP-depe 96.2 0.037 7.9E-07 57.5 10.2 96 65-170 79-179 (456)
320 KOG0726 26S proteasome regulat 96.1 0.081 1.8E-06 52.0 11.9 43 59-101 188-243 (440)
321 COG1419 FlhF Flagellar GTP-bin 96.1 0.046 1E-06 57.2 11.1 87 77-168 203-290 (407)
322 TIGR02236 recomb_radA DNA repa 96.1 0.052 1.1E-06 56.7 11.8 58 76-135 94-155 (310)
323 TIGR03881 KaiC_arch_4 KaiC dom 96.1 0.041 9E-07 54.7 10.5 41 76-119 19-59 (229)
324 PRK12726 flagellar biosynthesi 96.1 0.051 1.1E-06 56.8 11.2 90 76-170 205-296 (407)
325 TIGR00708 cobA cob(I)alamin ad 96.1 0.025 5.5E-07 52.4 8.1 119 77-198 5-141 (173)
326 PRK04328 hypothetical protein; 96.1 0.029 6.2E-07 56.4 9.3 41 76-119 22-62 (249)
327 PF13481 AAA_25: AAA domain; P 96.1 0.03 6.6E-07 53.9 9.2 42 78-119 33-81 (193)
328 PRK06835 DNA replication prote 96.1 0.025 5.4E-07 58.9 9.0 46 77-131 183-228 (329)
329 PRK10463 hydrogenase nickel in 96.1 0.022 4.7E-07 57.5 8.1 32 70-101 97-128 (290)
330 PTZ00088 adenylate kinase 1; P 96.1 0.007 1.5E-07 59.6 4.5 23 79-101 8-30 (229)
331 PRK12724 flagellar biosynthesi 96.0 0.021 4.6E-07 60.6 8.1 58 77-136 223-281 (432)
332 KOG0739 AAA+-type ATPase [Post 96.0 0.1 2.2E-06 51.6 12.0 170 56-253 133-335 (439)
333 PRK09270 nucleoside triphospha 96.0 0.024 5.2E-07 56.3 8.3 27 75-101 31-57 (229)
334 PF13238 AAA_18: AAA domain; P 96.0 0.0054 1.2E-07 54.6 3.3 22 80-101 1-22 (129)
335 PLN03186 DNA repair protein RA 96.0 0.048 1E-06 57.0 10.7 58 76-135 122-183 (342)
336 TIGR00764 lon_rel lon-related 96.0 0.017 3.7E-07 65.6 7.8 80 50-134 12-91 (608)
337 PF01583 APS_kinase: Adenylyls 96.0 0.0066 1.4E-07 55.3 3.5 36 77-115 2-37 (156)
338 TIGR01359 UMP_CMP_kin_fam UMP- 96.0 0.0076 1.6E-07 57.6 4.2 23 79-101 1-23 (183)
339 PRK08972 fliI flagellum-specif 96.0 0.017 3.6E-07 61.7 7.0 90 76-170 161-263 (444)
340 PRK04040 adenylate kinase; Pro 95.9 0.031 6.8E-07 53.3 8.3 24 78-101 3-26 (188)
341 PRK07667 uridine kinase; Provi 95.9 0.0097 2.1E-07 57.3 4.9 37 65-101 3-41 (193)
342 PRK07132 DNA polymerase III su 95.9 0.23 5.1E-06 50.9 15.1 167 65-258 5-184 (299)
343 cd02027 APSK Adenosine 5'-phos 95.9 0.027 5.9E-07 51.6 7.5 23 79-101 1-23 (149)
344 TIGR00390 hslU ATP-dependent p 95.9 0.017 3.6E-07 61.1 6.7 75 56-133 12-104 (441)
345 cd02019 NK Nucleoside/nucleoti 95.9 0.0069 1.5E-07 47.1 2.9 23 79-101 1-23 (69)
346 TIGR02858 spore_III_AA stage I 95.9 0.034 7.4E-07 56.1 8.6 127 65-199 98-231 (270)
347 KOG2170 ATPase of the AAA+ sup 95.9 0.026 5.5E-07 56.0 7.3 44 58-101 84-134 (344)
348 COG0468 RecA RecA/RadA recombi 95.9 0.04 8.8E-07 55.4 9.0 90 76-169 59-151 (279)
349 PRK05703 flhF flagellar biosyn 95.9 0.046 9.9E-07 59.3 10.2 87 77-168 221-308 (424)
350 cd03214 ABC_Iron-Siderophores_ 95.8 0.022 4.7E-07 54.3 6.7 120 76-199 24-160 (180)
351 COG5238 RNA1 Ran GTPase-activa 95.8 0.017 3.7E-07 56.1 5.8 14 627-640 240-253 (388)
352 PF13671 AAA_33: AAA domain; P 95.8 0.0078 1.7E-07 54.8 3.5 23 79-101 1-23 (143)
353 PF07724 AAA_2: AAA domain (Cd 95.8 0.013 2.8E-07 54.9 5.0 42 77-121 3-45 (171)
354 PRK00889 adenylylsulfate kinas 95.8 0.03 6.5E-07 53.0 7.6 25 77-101 4-28 (175)
355 PF06309 Torsin: Torsin; Inte 95.8 0.016 3.4E-07 50.2 4.9 45 57-101 26-77 (127)
356 COG0541 Ffh Signal recognition 95.8 0.076 1.7E-06 55.8 10.7 90 65-157 79-179 (451)
357 PF08433 KTI12: Chromatin asso 95.8 0.026 5.6E-07 57.1 7.1 24 78-101 2-25 (270)
358 PRK05922 type III secretion sy 95.8 0.028 6E-07 60.3 7.7 91 76-170 156-258 (434)
359 PRK05986 cob(I)alamin adenolsy 95.8 0.031 6.6E-07 52.6 7.1 120 76-198 21-159 (191)
360 PRK05201 hslU ATP-dependent pr 95.7 0.024 5.1E-07 60.0 7.0 78 56-133 15-107 (443)
361 TIGR00554 panK_bact pantothena 95.7 0.055 1.2E-06 55.1 9.4 27 75-101 60-86 (290)
362 PF07728 AAA_5: AAA domain (dy 95.7 0.022 4.7E-07 51.6 5.9 42 80-127 2-43 (139)
363 COG1428 Deoxynucleoside kinase 95.7 0.019 4.1E-07 54.2 5.5 49 77-131 4-52 (216)
364 PRK06002 fliI flagellum-specif 95.7 0.046 1E-06 58.7 9.1 89 77-170 165-265 (450)
365 PRK06762 hypothetical protein; 95.7 0.0096 2.1E-07 55.8 3.6 25 77-101 2-26 (166)
366 TIGR03575 selen_PSTK_euk L-ser 95.7 0.036 7.8E-07 57.7 8.0 22 80-101 2-23 (340)
367 TIGR00235 udk uridine kinase. 95.7 0.026 5.6E-07 55.1 6.7 26 76-101 5-30 (207)
368 TIGR00150 HI0065_YjeE ATPase, 95.7 0.02 4.4E-07 50.6 5.3 39 63-101 6-46 (133)
369 PRK05480 uridine/cytidine kina 95.7 0.01 2.2E-07 58.1 3.8 27 75-101 4-30 (209)
370 PRK10416 signal recognition pa 95.7 0.11 2.3E-06 54.1 11.4 26 76-101 113-138 (318)
371 PF00006 ATP-synt_ab: ATP synt 95.6 0.053 1.2E-06 52.7 8.6 86 78-170 16-116 (215)
372 TIGR03498 FliI_clade3 flagella 95.6 0.026 5.6E-07 60.5 7.0 91 76-170 139-241 (418)
373 cd01124 KaiC KaiC is a circadi 95.6 0.04 8.6E-07 52.8 7.8 44 80-128 2-45 (187)
374 CHL00206 ycf2 Ycf2; Provisiona 95.6 0.091 2E-06 65.0 12.0 27 75-101 1628-1654(2281)
375 PRK11823 DNA repair protein Ra 95.6 0.042 9.1E-07 60.1 8.7 95 66-169 67-166 (446)
376 PRK12678 transcription termina 95.6 0.03 6.6E-07 61.0 7.3 91 78-170 417-514 (672)
377 PRK08533 flagellar accessory p 95.6 0.076 1.7E-06 52.6 9.8 49 76-129 23-71 (230)
378 PRK14527 adenylate kinase; Pro 95.6 0.017 3.6E-07 55.6 5.0 26 76-101 5-30 (191)
379 TIGR03878 thermo_KaiC_2 KaiC d 95.6 0.053 1.2E-06 54.8 8.8 40 76-118 35-74 (259)
380 COG4088 Predicted nucleotide k 95.6 0.011 2.5E-07 54.9 3.5 24 78-101 2-25 (261)
381 PRK05342 clpX ATP-dependent pr 95.6 0.034 7.4E-07 59.8 7.6 46 56-101 71-132 (412)
382 cd03247 ABCC_cytochrome_bd The 95.6 0.037 8E-07 52.6 7.1 26 76-101 27-52 (178)
383 PF00625 Guanylate_kin: Guanyl 95.5 0.02 4.4E-07 54.6 5.4 38 77-117 2-39 (183)
384 PTZ00301 uridine kinase; Provi 95.5 0.011 2.4E-07 57.3 3.5 25 77-101 3-27 (210)
385 PF03205 MobB: Molybdopterin g 95.5 0.017 3.8E-07 52.0 4.5 39 78-118 1-39 (140)
386 PF00910 RNA_helicase: RNA hel 95.5 0.0092 2E-07 51.2 2.5 22 80-101 1-22 (107)
387 KOG3347 Predicted nucleotide k 95.5 0.02 4.3E-07 50.5 4.5 70 78-160 8-77 (176)
388 KOG1532 GTPase XAB1, interacts 95.5 0.068 1.5E-06 52.1 8.5 61 76-139 18-89 (366)
389 PRK03839 putative kinase; Prov 95.5 0.011 2.5E-07 56.2 3.3 23 79-101 2-24 (180)
390 TIGR02030 BchI-ChlI magnesium 95.5 0.022 4.7E-07 59.5 5.7 46 56-101 4-49 (337)
391 cd02025 PanK Pantothenate kina 95.5 0.063 1.4E-06 52.7 8.6 23 79-101 1-23 (220)
392 PRK09519 recA DNA recombinatio 95.5 0.042 9E-07 63.2 8.2 95 67-169 47-148 (790)
393 PRK03846 adenylylsulfate kinas 95.4 0.045 9.7E-07 53.0 7.4 27 75-101 22-48 (198)
394 PRK06217 hypothetical protein; 95.4 0.025 5.3E-07 54.0 5.5 23 79-101 3-25 (183)
395 PRK08927 fliI flagellum-specif 95.4 0.042 9.1E-07 59.0 7.6 90 76-170 157-259 (442)
396 PF00560 LRR_1: Leucine Rich R 95.4 0.0058 1.3E-07 35.2 0.7 17 464-480 2-18 (22)
397 PRK14721 flhF flagellar biosyn 95.4 0.077 1.7E-06 56.9 9.6 61 76-137 190-251 (420)
398 TIGR00416 sms DNA repair prote 95.4 0.059 1.3E-06 59.0 8.9 51 65-118 80-132 (454)
399 COG1121 ZnuC ABC-type Mn/Zn tr 95.4 0.04 8.7E-07 54.3 6.8 120 78-199 31-201 (254)
400 TIGR02655 circ_KaiC circadian 95.4 0.084 1.8E-06 58.7 10.2 99 65-169 249-363 (484)
401 PF06745 KaiC: KaiC; InterPro 95.4 0.028 6E-07 55.8 5.8 89 76-170 18-126 (226)
402 PRK06995 flhF flagellar biosyn 95.4 0.093 2E-06 57.3 10.1 59 77-136 256-315 (484)
403 cd03223 ABCD_peroxisomal_ALDP 95.3 0.075 1.6E-06 49.7 8.2 26 76-101 26-51 (166)
404 PF07726 AAA_3: ATPase family 95.3 0.012 2.6E-07 51.1 2.5 28 80-110 2-29 (131)
405 PRK00131 aroK shikimate kinase 95.3 0.016 3.5E-07 54.8 3.7 25 77-101 4-28 (175)
406 PRK14723 flhF flagellar biosyn 95.3 0.09 1.9E-06 60.3 10.1 88 77-169 185-273 (767)
407 TIGR01360 aden_kin_iso1 adenyl 95.3 0.015 3.3E-07 55.7 3.6 26 76-101 2-27 (188)
408 PRK13407 bchI magnesium chelat 95.3 0.022 4.8E-07 59.3 4.8 46 56-101 8-53 (334)
409 cd01135 V_A-ATPase_B V/A-type 95.3 0.094 2E-06 52.5 9.0 95 77-171 69-178 (276)
410 PRK05973 replicative DNA helic 95.3 0.12 2.5E-06 51.0 9.6 49 76-129 63-111 (237)
411 cd00544 CobU Adenosylcobinamid 95.3 0.1 2.3E-06 48.7 8.8 79 80-168 2-82 (169)
412 PF03308 ArgK: ArgK protein; 95.3 0.031 6.8E-07 54.8 5.5 59 64-123 14-74 (266)
413 cd03216 ABC_Carb_Monos_I This 95.2 0.022 4.8E-07 53.1 4.3 113 76-198 25-143 (163)
414 COG3640 CooC CO dehydrogenase 95.2 0.028 6.1E-07 53.8 4.9 50 79-137 2-51 (255)
415 PF13245 AAA_19: Part of AAA d 95.2 0.041 8.8E-07 43.6 5.1 26 76-101 9-34 (76)
416 PRK00625 shikimate kinase; Pro 95.2 0.015 3.3E-07 54.5 3.2 23 79-101 2-24 (173)
417 PRK05800 cobU adenosylcobinami 95.2 0.072 1.6E-06 49.9 7.6 83 79-169 3-86 (170)
418 PF03193 DUF258: Protein of un 95.2 0.027 5.8E-07 51.6 4.5 36 63-101 24-59 (161)
419 KOG1970 Checkpoint RAD17-RFC c 95.1 0.21 4.6E-06 53.8 11.6 49 61-114 87-142 (634)
420 CHL00081 chlI Mg-protoporyphyr 95.1 0.027 5.8E-07 58.9 4.7 46 56-101 17-62 (350)
421 cd01129 PulE-GspE PulE/GspE Th 95.1 0.086 1.9E-06 53.4 8.3 104 59-175 62-165 (264)
422 PRK15453 phosphoribulokinase; 95.1 0.11 2.3E-06 52.2 8.6 80 76-158 4-89 (290)
423 cd00046 DEXDc DEAD-like helica 95.1 0.063 1.4E-06 48.2 6.8 53 79-133 2-54 (144)
424 TIGR01351 adk adenylate kinase 95.1 0.027 5.8E-07 55.1 4.5 22 80-101 2-23 (210)
425 COG1124 DppF ABC-type dipeptid 95.1 0.028 6.1E-07 54.2 4.4 26 76-101 32-57 (252)
426 cd03228 ABCC_MRP_Like The MRP 95.0 0.046 9.9E-07 51.5 5.9 26 76-101 27-52 (171)
427 TIGR03574 selen_PSTK L-seryl-t 95.0 0.063 1.4E-06 54.1 7.2 22 80-101 2-23 (249)
428 KOG0780 Signal recognition par 95.0 0.16 3.6E-06 52.1 9.8 59 75-136 99-158 (483)
429 COG0714 MoxR-like ATPases [Gen 95.0 0.055 1.2E-06 57.0 7.0 67 56-130 24-90 (329)
430 TIGR02322 phosphon_PhnN phosph 95.0 0.021 4.5E-07 54.3 3.5 24 78-101 2-25 (179)
431 PRK05439 pantothenate kinase; 95.0 0.17 3.7E-06 52.0 10.2 27 75-101 84-110 (311)
432 PRK05688 fliI flagellum-specif 95.0 0.066 1.4E-06 57.7 7.5 90 76-170 167-269 (451)
433 COG1703 ArgK Putative periplas 95.0 0.038 8.3E-07 54.9 5.2 63 67-130 39-103 (323)
434 PF03969 AFG1_ATPase: AFG1-lik 95.0 0.035 7.6E-07 58.6 5.3 78 75-169 60-137 (362)
435 cd01136 ATPase_flagellum-secre 95.0 0.13 2.8E-06 53.3 9.2 90 76-170 68-170 (326)
436 cd00071 GMPK Guanosine monopho 94.9 0.024 5.2E-07 51.0 3.6 22 80-101 2-23 (137)
437 PF06414 Zeta_toxin: Zeta toxi 94.9 0.05 1.1E-06 52.7 6.0 91 75-170 13-103 (199)
438 PF13306 LRR_5: Leucine rich r 94.9 0.072 1.6E-06 47.3 6.6 103 410-519 8-112 (129)
439 PRK09099 type III secretion sy 94.9 0.1 2.2E-06 56.3 8.8 92 76-171 162-265 (441)
440 PRK00279 adk adenylate kinase; 94.9 0.036 7.7E-07 54.5 5.0 23 79-101 2-24 (215)
441 PRK07721 fliI flagellum-specif 94.9 0.072 1.6E-06 57.7 7.6 92 75-170 156-259 (438)
442 KOG1051 Chaperone HSP104 and r 94.9 0.091 2E-06 60.9 8.7 102 56-171 562-672 (898)
443 PF00158 Sigma54_activat: Sigm 94.9 0.052 1.1E-06 50.7 5.7 58 58-118 1-60 (168)
444 cd00227 CPT Chloramphenicol (C 94.9 0.023 5E-07 53.7 3.4 24 78-101 3-26 (175)
445 TIGR02902 spore_lonB ATP-depen 94.9 0.041 8.9E-07 61.7 5.9 46 56-101 65-110 (531)
446 PRK12597 F0F1 ATP synthase sub 94.9 0.068 1.5E-06 57.9 7.3 93 76-170 142-248 (461)
447 cd02024 NRK1 Nicotinamide ribo 94.9 0.02 4.3E-07 54.3 2.9 23 79-101 1-23 (187)
448 cd02023 UMPK Uridine monophosp 94.8 0.019 4.2E-07 55.6 2.9 23 79-101 1-23 (198)
449 PRK14529 adenylate kinase; Pro 94.8 0.094 2E-06 51.2 7.5 84 79-171 2-88 (223)
450 PRK08149 ATP synthase SpaL; Va 94.8 0.14 2.9E-06 55.1 9.3 90 76-170 150-252 (428)
451 PF05970 PIF1: PIF1-like helic 94.8 0.063 1.4E-06 57.3 6.9 38 64-101 9-46 (364)
452 COG1224 TIP49 DNA helicase TIP 94.8 0.068 1.5E-06 54.3 6.5 55 54-109 37-96 (450)
453 PRK13947 shikimate kinase; Pro 94.8 0.025 5.5E-07 53.3 3.4 23 79-101 3-25 (171)
454 COG0396 sufC Cysteine desulfur 94.7 0.072 1.6E-06 51.0 6.2 26 76-101 29-54 (251)
455 cd02021 GntK Gluconate kinase 94.7 0.022 4.8E-07 52.3 2.9 23 79-101 1-23 (150)
456 PRK06936 type III secretion sy 94.7 0.079 1.7E-06 56.9 7.2 90 76-170 161-263 (439)
457 PF08298 AAA_PrkA: PrkA AAA do 94.7 0.053 1.1E-06 55.8 5.7 46 56-101 61-112 (358)
458 PRK13949 shikimate kinase; Pro 94.7 0.028 6.1E-07 52.7 3.4 23 79-101 3-25 (169)
459 PLN02165 adenylate isopentenyl 94.7 0.029 6.3E-07 57.7 3.8 29 73-101 39-67 (334)
460 PRK14528 adenylate kinase; Pro 94.7 0.042 9.2E-07 52.5 4.7 24 78-101 2-25 (186)
461 PRK09280 F0F1 ATP synthase sub 94.7 0.14 3E-06 55.4 9.0 92 77-170 144-249 (463)
462 cd02020 CMPK Cytidine monophos 94.7 0.024 5.2E-07 51.8 2.9 23 79-101 1-23 (147)
463 PLN02924 thymidylate kinase 94.7 0.13 2.9E-06 50.3 8.2 53 77-131 16-68 (220)
464 cd03222 ABC_RNaseL_inhibitor T 94.7 0.079 1.7E-06 49.9 6.4 26 76-101 24-49 (177)
465 PF13086 AAA_11: AAA domain; P 94.7 0.066 1.4E-06 53.3 6.3 35 65-101 7-41 (236)
466 PF14532 Sigma54_activ_2: Sigm 94.7 0.036 7.9E-07 50.0 4.0 43 59-101 1-45 (138)
467 PRK14737 gmk guanylate kinase; 94.7 0.03 6.5E-07 53.3 3.6 26 76-101 3-28 (186)
468 COG0467 RAD55 RecA-superfamily 94.6 0.072 1.6E-06 54.1 6.5 52 75-131 21-72 (260)
469 TIGR03305 alt_F1F0_F1_bet alte 94.6 0.12 2.7E-06 55.6 8.4 92 77-170 138-243 (449)
470 cd01132 F1_ATPase_alpha F1 ATP 94.6 0.13 2.8E-06 51.5 8.0 88 77-171 69-173 (274)
471 PRK12339 2-phosphoglycerate ki 94.6 0.032 7E-07 53.6 3.7 25 77-101 3-27 (197)
472 TIGR00041 DTMP_kinase thymidyl 94.6 0.15 3.3E-06 49.1 8.5 24 78-101 4-27 (195)
473 PRK10751 molybdopterin-guanine 94.6 0.032 6.9E-07 51.9 3.5 26 76-101 5-30 (173)
474 COG1116 TauB ABC-type nitrate/ 94.6 0.029 6.2E-07 54.6 3.2 26 76-101 28-53 (248)
475 cd02029 PRK_like Phosphoribulo 94.5 0.14 3.1E-06 50.8 7.9 79 79-160 1-85 (277)
476 PRK14530 adenylate kinase; Pro 94.5 0.031 6.7E-07 54.9 3.4 24 78-101 4-27 (215)
477 TIGR01313 therm_gnt_kin carboh 94.5 0.025 5.5E-07 52.8 2.7 22 80-101 1-22 (163)
478 TIGR03263 guanyl_kin guanylate 94.5 0.03 6.5E-07 53.3 3.2 24 78-101 2-25 (180)
479 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.5 0.16 3.4E-06 46.2 7.8 26 76-101 25-50 (144)
480 TIGR01650 PD_CobS cobaltochela 94.5 0.099 2.1E-06 53.8 7.0 63 56-126 45-107 (327)
481 COG0003 ArsA Predicted ATPase 94.5 0.055 1.2E-06 55.8 5.2 49 77-128 2-50 (322)
482 KOG0738 AAA+-type ATPase [Post 94.5 0.23 5E-06 51.2 9.3 45 57-101 213-269 (491)
483 COG3598 RepA RecA-family ATPas 94.4 0.18 3.9E-06 50.6 8.3 59 79-137 91-157 (402)
484 cd00464 SK Shikimate kinase (S 94.4 0.031 6.8E-07 51.5 3.1 22 80-101 2-23 (154)
485 COG0194 Gmk Guanylate kinase [ 94.4 0.038 8.3E-07 51.1 3.5 25 77-101 4-28 (191)
486 PRK13948 shikimate kinase; Pro 94.4 0.044 9.6E-07 51.8 4.1 26 76-101 9-34 (182)
487 cd02028 UMPK_like Uridine mono 94.4 0.028 6.2E-07 53.2 2.9 23 79-101 1-23 (179)
488 TIGR01420 pilT_fam pilus retra 94.4 0.038 8.2E-07 58.4 4.1 88 76-175 121-211 (343)
489 TIGR03496 FliI_clade1 flagella 94.4 0.17 3.8E-06 54.3 9.1 90 76-170 136-238 (411)
490 PF02456 Adeno_IVa2: Adenoviru 94.4 0.32 7E-06 48.6 10.0 169 79-262 89-297 (369)
491 TIGR01039 atpD ATP synthase, F 94.4 0.18 3.9E-06 54.4 9.0 94 76-171 142-249 (461)
492 PRK09435 membrane ATPase/prote 94.4 0.26 5.7E-06 51.3 10.0 36 66-101 43-80 (332)
493 PF06068 TIP49: TIP49 C-termin 94.4 0.076 1.7E-06 54.8 5.9 47 55-101 23-74 (398)
494 PF10923 DUF2791: P-loop Domai 94.4 0.32 6.9E-06 52.0 10.7 80 55-137 23-113 (416)
495 PRK05057 aroK shikimate kinase 94.4 0.039 8.5E-07 51.9 3.6 25 77-101 4-28 (172)
496 TIGR01026 fliI_yscN ATPase Fli 94.4 0.1 2.3E-06 56.5 7.3 91 76-170 162-264 (440)
497 PRK07594 type III secretion sy 94.4 0.16 3.4E-06 54.7 8.5 90 76-170 154-256 (433)
498 COG4240 Predicted kinase [Gene 94.4 0.19 4.1E-06 47.8 7.8 84 75-160 48-134 (300)
499 TIGR00073 hypB hydrogenase acc 94.3 0.046 9.9E-07 53.3 4.2 32 70-101 15-46 (207)
500 PRK00300 gmk guanylate kinase; 94.3 0.04 8.7E-07 53.7 3.8 25 77-101 5-29 (205)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-85 Score=743.94 Aligned_cols=744 Identities=42% Similarity=0.715 Sum_probs=616.9
Q ss_pred CccCCCCCCchhhhhhhHHHHHHHHHHHHHHhcccCceeeec-cCCCCccccCCCCCC--CCchHHHHHHHHHhccCCcc
Q 046742 2 LNIGGFCSKNCQSNYKFGKKVAKYLQVVATLKGEIFFEVVAE-RIPEPTVEERPIPQT--LGLESTFDEVWRCLGEEHVG 78 (769)
Q Consensus 2 ~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--vGr~~~~~~l~~~L~~~~~~ 78 (769)
.|+.++|..+...-|.+++++.+..++++.+..++.+..++. ..+.+.++.++.... ||.+..++++.+.|.+++..
T Consensus 101 ~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~ 180 (889)
T KOG4658|consen 101 LCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETMLEKLWNRLMEDDVG 180 (889)
T ss_pred HhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccHHHHHHHHHHHhccCCCC
Confidence 477789999999999999999999999999988877766654 233334444444434 99999999999999988889
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHcc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSR 158 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 158 (769)
+++|+||||+||||||++++++...++++|+.++||.||++++...++++|++.++..+..+.....++.+..+.+.|++
T Consensus 181 iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~ 260 (889)
T KOG4658|consen 181 IVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEG 260 (889)
T ss_pred EEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999448999999999999999999999999999999877666666678999999999999
Q ss_pred CCEEEEEecccCcccccccCCCCCCCCCCcEEEEeeccCCcccc-ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCC
Q 046742 159 KKFVLLLDDIWNRVDLEKLGIPPMNTNGSSKIVFTTRSAGGCGL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQ 237 (769)
Q Consensus 159 k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~iivTtR~~~v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~ 237 (769)
|||+|||||||+..+|+.++.++|...+||+|++|||+.+||.. +++...++++.|+.+|||++|++.++.......+.
T Consensus 261 krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~ 340 (889)
T KOG4658|consen 261 KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPD 340 (889)
T ss_pred CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccccccc
Confidence 99999999999999999999999999899999999999999987 77788999999999999999999999876566667
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHhcCCCChhHHHHHHHHHHhc-ccCCCChh---------------h-hhhHHhhhc
Q 046742 238 IPELAEIVAKECDGLPLALITIGRAMAFKKTPQEWKDAIQVLRRS-ASEFPGMD---------------E-IKSCFLYCC 300 (769)
Q Consensus 238 ~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~-~~~~~~~~---------------~-~k~cfl~~s 300 (769)
+.++|++++++|+|+|||++++|+.|+.|.++++|+.+.+.+.+. ..+.++++ . +|.||+|||
T Consensus 341 i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLyca 420 (889)
T KOG4658|consen 341 IEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCA 420 (889)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999887665 33333322 2 999999999
Q ss_pred CCCCCCccchhHHHHHHhhcCccccch-------hHhHHHHHHHHhhcccccC----CCceEEhHHHHHHHHHHHhhhcc
Q 046742 301 LFPEDCDISKIDLIDCWIGEGFFDEYD-------RGYTIIGDLLRACLLEEVN----DNNVKLHDVIRDMGLWIASEVEK 369 (769)
Q Consensus 301 ~fp~~~~i~~~~li~~w~a~g~~~~~~-------~~~~~~~~L~~~sll~~~~----~~~~~mhdl~~~~~~~~~~~~~~ 369 (769)
+||+++.|+++.++.+|+||||+...+ .|++++.+|++++|+...+ ...|+|||++|++|.+++++.+.
T Consensus 421 lFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~ 500 (889)
T KOG4658|consen 421 LFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGK 500 (889)
T ss_pred cCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccc
Confidence 999999999999999999999998732 8999999999999998753 47999999999999999998888
Q ss_pred ccceEEEecCCccccCCCCCcceeEEEEeecccccccccCCCCCCCccEEEccCCC--CcccchhhhcCCCcceEEEecC
Q 046742 370 EKESFFVQAGARLTEAPETGKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNN--LKVITDGFFQFMPSLKVLNLSN 447 (769)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~L~~ 447 (769)
.+++.++.++.+..+.+....+...|++++++|.+..++.-..++.|++|-+.+|. +..++..+|..|+.|++|||++
T Consensus 501 ~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~ 580 (889)
T KOG4658|consen 501 QEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSG 580 (889)
T ss_pred cccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCC
Confidence 78888888887888888888899999999999999988888888999999999995 8899999999999999999999
Q ss_pred CCCCccccccccCCcCCCEEeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccc
Q 046742 448 NQSLKQLPSGISRLVSLQHLNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVE 527 (769)
Q Consensus 448 ~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 527 (769)
|..+..+|.+|++|.+||||+++++.+..+|.++++|++|.+|++..+..+..+|. ....|++|++|.+..-. ..
T Consensus 581 ~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~----~~ 655 (889)
T KOG4658|consen 581 NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA----LS 655 (889)
T ss_pred CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccc----cc
Confidence 99999999999999999999999999999999999999999999999887777654 36669999999998532 34
Q ss_pred hhhhHHHHhhcCcCCcEEEEEeccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceE
Q 046742 528 NCEVLMEEVLLMENLNVLGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEEL 607 (769)
Q Consensus 528 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l 607 (769)
.....+.++..+++|+.+.+...+...+..+....++......+.+..+ .......++..+.+|++|.|.+|...+..
T Consensus 656 ~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~--~~~~~~~~~~~l~~L~~L~i~~~~~~e~~ 733 (889)
T KOG4658|consen 656 NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC--SKRTLISSLGSLGNLEELSILDCGISEIV 733 (889)
T ss_pred cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc--ccceeecccccccCcceEEEEcCCCchhh
Confidence 4556678888999999998876665444555555555555555554331 11112234678899999999999876532
Q ss_pred EeccccccccccccccCcc-ccccccEEEEecCcCCcccccccccCCccEEEEeecCcchhhcccccCCccccccCCccc
Q 046742 608 KIEIGNIQQNVCVSQVHGF-QFHSLYYVVVSDCNKLRNLSWLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPF 686 (769)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l 686 (769)
..+... .... .|+++..+.+.+|..++.+.|....|+|+.|.+.+|+.++++.+......-. ......|
T Consensus 734 -~~~~~~--------~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l-~~~i~~f 803 (889)
T KOG4658|consen 734 -IEWEES--------LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLEL-KELILPF 803 (889)
T ss_pred -cccccc--------cchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhc-ccEEecc
Confidence 222111 0111 2778999999999999999999999999999999999999887643222100 0012345
Q ss_pred ccccee-cccccccccccCCCCCCCCCccEEEecCCCCCCCCCCCCCC-CCCc--ceEEEehhhhhcccccCcccccccc
Q 046742 687 ARLELL-ILETLPKLKSIYPNALPFLHLKEIKVSNCPELKKLPLDSNS-AKGH--KIVIRGEESWWEELQWENQATQDVF 762 (769)
Q Consensus 687 ~~L~~L-~l~~c~~L~~~~~~~~~~~~L~~L~i~~c~~L~~L~l~~n~-~~~~--~~~i~~~~~w~~~l~~~~~~~~~~~ 762 (769)
.++..+ .+.+.+.+.++.+....++.|+.+.+..||+|..+|+..-. +.+. ......+.+|.++++|.++..+-.+
T Consensus 804 ~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 804 NKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred cccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 666666 57777777777777777888999999999999999996433 2221 2222345689999999998777655
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.9e-60 Score=573.10 Aligned_cols=662 Identities=20% Similarity=0.284 Sum_probs=462.7
Q ss_pred hHHHHHHHHHHHHHHhccc--Cc-------eeeeccCC--CCccccCCCCCCCCchHHHHHHHHHhc--cCCccEEEEEc
Q 046742 18 FGKKVAKYLQVVATLKGEI--FF-------EVVAERIP--EPTVEERPIPQTLGLESTFDEVWRCLG--EEHVGIIGLYG 84 (769)
Q Consensus 18 ~~~~i~~~~~~~~~~~~~~--~~-------~~~~~~~~--~~~~~~~~~~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G 84 (769)
..+++++++.+++++.+-. .. +.++..+. ....+....+.+|||+++++++..+|. .++.++|+|+|
T Consensus 135 ~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G 214 (1153)
T PLN03210 135 EKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWG 214 (1153)
T ss_pred HHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEc
Confidence 4567888888887775421 00 11111110 111233344789999999999999884 35788999999
Q ss_pred CCCCcHHHHHHHHHhhccCCCCCCcEEEEEEe---Ccc-----------cc-HHHHHHHHHHHhCCCCcccccccHHHHH
Q 046742 85 MGEVGKTTLLTRINNKFSNTPNGFDFVIWVVL---SRD-----------LQ-IDRLQENIARKIGLYDQSWKNKRLEIKA 149 (769)
Q Consensus 85 ~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~---~~~-----------~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 149 (769)
|||+||||||+++|++. ...|+..+|+.. ... .. ...++++++..+..... ..... .
T Consensus 215 ~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~-~~~~~----~ 286 (1153)
T PLN03210 215 SSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKD-IKIYH----L 286 (1153)
T ss_pred CCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCC-cccCC----H
Confidence 99999999999999987 578888888752 110 00 12344444444322110 01111 2
Q ss_pred HHHHHHHccCCEEEEEecccCcccccccCCCCCCCCCCcEEEEeeccCCccccccccceEEcCCCCHHHHHHHHHhhhCC
Q 046742 150 ADIFKILSRKKFVLLLDDIWNRVDLEKLGIPPMNTNGSSKIVFTTRSAGGCGLMEAHRIFKVKCLEHKEAWELFQMKVGR 229 (769)
Q Consensus 150 ~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~iivTtR~~~v~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~ 229 (769)
..+++.++++|+||||||||+..+++.+.....+.++|++||||||+..++..++...+|+++.++.++||+||++.|+.
T Consensus 287 ~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 287 GAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred HHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 45778899999999999999998888887665666789999999999999876667789999999999999999999987
Q ss_pred CccCCCCCHHHHHHHHHHHcCCchhHHHHHHHHhcCCCChhHHHHHHHHHHhc---------ccCCCChhh--hhhHHhh
Q 046742 230 ETLESHLQIPELAEIVAKECDGLPLALITIGRAMAFKKTPQEWKDAIQVLRRS---------ASEFPGMDE--IKSCFLY 298 (769)
Q Consensus 230 ~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~---------~~~~~~~~~--~k~cfl~ 298 (769)
.. ..+..+.+++++|+++|+|+|||++++|++|+. ++..+|+.++++++.. ..++++++. .|.||++
T Consensus 367 ~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ 444 (1153)
T PLN03210 367 KN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRH 444 (1153)
T ss_pred CC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhhe
Confidence 65 334567899999999999999999999999997 5789999999887753 224555532 7999999
Q ss_pred hcCCCCCCccchhHHHHHHhhcCccccchhHhHHHHHHHHhhcccccCCCceEEhHHHHHHHHHHHhhhc--cccceEEE
Q 046742 299 CCLFPEDCDISKIDLIDCWIGEGFFDEYDRGYTIIGDLLRACLLEEVNDNNVKLHDVIRDMGLWIASEVE--KEKESFFV 376 (769)
Q Consensus 299 ~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~L~~~sll~~~~~~~~~mhdl~~~~~~~~~~~~~--~~~~~~~~ 376 (769)
+|+|+.+..++ .+..|++.+... +...+..|+++||++.. ...+.|||++|+||++++++.. +.++.++.
T Consensus 445 ia~ff~~~~~~---~v~~~l~~~~~~----~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~ 516 (1153)
T PLN03210 445 IACLFNGEKVN---DIKLLLANSDLD----VNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLV 516 (1153)
T ss_pred ehhhcCCCCHH---HHHHHHHhcCCC----chhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEe
Confidence 99999887654 366777765443 22348899999999875 4679999999999999987642 12222222
Q ss_pred ecC---------C---c----------cccC----CCCCcc-------------------------------eeEEEEee
Q 046742 377 QAG---------A---R----------LTEA----PETGKW-------------------------------QVIRRMSL 399 (769)
Q Consensus 377 ~~~---------~---~----------~~~~----~~~~~~-------------------------------~~l~~L~l 399 (769)
... . . ..+. ..+.++ .++|.|.+
T Consensus 517 ~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~ 596 (1153)
T PLN03210 517 DAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRW 596 (1153)
T ss_pred CHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEe
Confidence 110 0 0 0000 001111 24666666
Q ss_pred cccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCC-CCcccc
Q 046742 400 MENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLT-NIKELP 478 (769)
Q Consensus 400 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~-~l~~lp 478 (769)
.++.++.+|......+|+.|++.+|.+..++.+ +..+++|++|+|++|..++.+| .++.+++|++|++++| .+..+|
T Consensus 597 ~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp 674 (1153)
T PLN03210 597 DKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELP 674 (1153)
T ss_pred cCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccc
Confidence 666666666655678888888888888887766 6778899999998887778888 4778889999999887 577889
Q ss_pred hhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEeccchhhhhh
Q 046742 479 EELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTSSHALSKF 558 (769)
Q Consensus 479 ~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 558 (769)
..++++++|+.|++++|..++.+|.. + ++++|+.|++++|......+. ..++|+.|+++.+....++..
T Consensus 675 ~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~---------~~~nL~~L~L~~n~i~~lP~~ 743 (1153)
T PLN03210 675 SSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPD---------ISTNISWLDLDETAIEEFPSN 743 (1153)
T ss_pred hhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCcccccc---------ccCCcCeeecCCCcccccccc
Confidence 88999999999999998888888875 3 788999999988875544431 135677777766655444432
Q ss_pred hcccccccccceeeecccCCCcccc----ccC--cccccCCCeEEEeccCCcceEEeccccccccccccccCcccccccc
Q 046742 559 LSSHRIQSYILHLRLELLEDSRSLN----VLP--LANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSLY 632 (769)
Q Consensus 559 ~~~~~~~~~l~~L~l~~~~~~~~~~----~~~--l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 632 (769)
.. ..++..|.+.++....... ..+ ....++|++|++++|+.+..+|.+.. .+++|+
T Consensus 744 ~~----l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~--------------~L~~L~ 805 (1153)
T PLN03210 744 LR----LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ--------------NLHKLE 805 (1153)
T ss_pred cc----ccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh--------------CCCCCC
Confidence 21 1234444443322111100 000 11235677777777766665554332 356777
Q ss_pred EEEEecCcCCcccccccccCCccEEEEeecCcchhhcccc------------cCCccccccCCccccccceecccccccc
Q 046742 633 YVVVSDCNKLRNLSWLGLAPNLLTIDILRCPEIEEISGQY------------SGEVPEMMRNLNPFARLELLILETLPKL 700 (769)
Q Consensus 633 ~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~------------~~~~~~~~~~~~~l~~L~~L~l~~c~~L 700 (769)
.|++++|.+++.+|....+++|+.|++++|..+..++... ...+| ..+..+++|+.|++++|+++
T Consensus 806 ~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP---~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 806 HLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVP---WWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred EEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccCh---HHHhcCCCCCEEECCCCCCc
Confidence 7777777777666654466777777777776665443210 01122 24567899999999999999
Q ss_pred cccCCCCCCCCCccEEEecCCCCCCCCCCCC
Q 046742 701 KSIYPNALPFLHLKEIKVSNCPELKKLPLDS 731 (769)
Q Consensus 701 ~~~~~~~~~~~~L~~L~i~~c~~L~~L~l~~ 731 (769)
..++.....++.|+.+++++|++|+.+++.+
T Consensus 883 ~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~ 913 (1153)
T PLN03210 883 QRVSLNISKLKHLETVDFSDCGALTEASWNG 913 (1153)
T ss_pred CccCcccccccCCCeeecCCCcccccccCCC
Confidence 9999988889999999999999999877654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.5e-41 Score=350.08 Aligned_cols=265 Identities=34% Similarity=0.603 Sum_probs=212.2
Q ss_pred chHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCc
Q 046742 61 LESTFDEVWRCLGE--EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQ 138 (769)
Q Consensus 61 r~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 138 (769)
||.++++|.+.|.+ ++.++|+|+||||+||||||++++++. ..+.+|+.++|+.++...+..+++.+|+++++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 79999999999987 789999999999999999999999995 357999999999999998999999999999987754
Q ss_pred cc-ccccHHHHHHHHHHHHccCCEEEEEecccCcccccccCCCCCCCCCCcEEEEeeccCCccccccc-cceEEcCCCCH
Q 046742 139 SW-KNKRLEIKAADIFKILSRKKFVLLLDDIWNRVDLEKLGIPPMNTNGSSKIVFTTRSAGGCGLMEA-HRIFKVKCLEH 216 (769)
Q Consensus 139 ~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~iivTtR~~~v~~~~~~-~~~~~l~~l~~ 216 (769)
.. ...+.++....+.+.++++++||||||||+..+|+.+...++....|++||||||+..++..... ...+++++|+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33 45678889999999999999999999999999998888777777779999999999988776554 67899999999
Q ss_pred HHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHHHhcCCCChhHHHHHHHHHHhcccCCCC--------
Q 046742 217 KEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGRAMAFKKTPQEWKDAIQVLRRSASEFPG-------- 288 (769)
Q Consensus 217 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~~-------- 288 (769)
+||++||++.++...........+.+++|+++|+|+|+|++++|++|+.+.+..+|+.+++++.....+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999987655233455678899999999999999999999997655778999999887765433221
Q ss_pred -------hhh-hhhHHhhhcCCCCCCccchhHHHHHHhhcCccccc
Q 046742 289 -------MDE-IKSCFLYCCLFPEDCDISKIDLIDCWIGEGFFDEY 326 (769)
Q Consensus 289 -------~~~-~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~ 326 (769)
++. +|.||+|||+||+++.|+++.++++|+++|++...
T Consensus 240 l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 240 LELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 111 89999999999999999999999999999998764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=3.1e-21 Score=234.50 Aligned_cols=321 Identities=22% Similarity=0.240 Sum_probs=173.0
Q ss_pred cceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEec
Q 046742 390 KWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNL 469 (769)
Q Consensus 390 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 469 (769)
.+++|++|++++|.+........+++|++|++++|.+....+..++.+++|++|+|++|...+.+|..++++.+|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 34456666666665543323344556666666666555333333566666666666666444556666666666666666
Q ss_pred cCCCCc-ccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEE
Q 046742 470 SLTNIK-ELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGIN 548 (769)
Q Consensus 470 ~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 548 (769)
++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+....+ ..+..+++|+.|.++
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p------~~l~~l~~L~~L~L~ 268 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIP------SSLGNLKNLQYLFLY 268 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceeccccC------hhHhCCCCCCEEECc
Confidence 666555 45666666666666666666544455554 5666666666666665544333 345556666666665
Q ss_pred eccchh-hhhhhcccccccccceeeecccCCCccccccC--cccccCCCeEEEeccCCcceEEeccccccccccccccCc
Q 046742 549 LTSSHA-LSKFLSSHRIQSYILHLRLELLEDSRSLNVLP--LANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHG 625 (769)
Q Consensus 549 ~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 625 (769)
.+.... .+..+ ....+++.|.+.++ ......| +.++++|+.|+++++.....++..+
T Consensus 269 ~n~l~~~~p~~l---~~l~~L~~L~Ls~n---~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~-------------- 328 (968)
T PLN00113 269 QNKLSGPIPPSI---FSLQKLISLDLSDN---SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL-------------- 328 (968)
T ss_pred CCeeeccCchhH---hhccCcCEEECcCC---eeccCCChhHcCCCCCcEEECCCCccCCcCChhH--------------
Confidence 443321 11111 01123333333322 1111111 3455666666665543322221111
Q ss_pred cccccccEEEEecCcCCcccc-cccccCCccEEEEeecCcchhhccc----------------ccCCccccccCCccccc
Q 046742 626 FQFHSLYYVVVSDCNKLRNLS-WLGLAPNLLTIDILRCPEIEEISGQ----------------YSGEVPEMMRNLNPFAR 688 (769)
Q Consensus 626 ~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~l~~~----------------~~~~~~~~~~~~~~l~~ 688 (769)
..+++|+.|++++|.....++ .++.+++|+.|+++++..-..++.. ..+..| ..+..+++
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p---~~~~~~~~ 405 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP---KSLGACRS 405 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC---HHHhCCCC
Confidence 235667777776664333333 3556666777766654322111110 011112 23456788
Q ss_pred cceecccccccccccCCCCCCCCCccEEEecC-------------CCCCCCCCCCCCCCCCcceE
Q 046742 689 LELLILETLPKLKSIYPNALPFLHLKEIKVSN-------------CPELKKLPLDSNSAKGHKIV 740 (769)
Q Consensus 689 L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~-------------c~~L~~L~l~~n~~~~~~~~ 740 (769)
|+.|++++|.-...+|.....+++|+.|++++ +++|+.|++++|.+.+..+.
T Consensus 406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~ 470 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470 (968)
T ss_pred CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc
Confidence 88888888765556666666778888888764 57788888888887765544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=6.7e-21 Score=231.53 Aligned_cols=344 Identities=19% Similarity=0.226 Sum_probs=227.9
Q ss_pred CcceeEEEEeeccccccc-ccC-CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCE
Q 046742 389 GKWQVIRRMSLMENQVQS-LSK-IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQH 466 (769)
Q Consensus 389 ~~~~~l~~L~l~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 466 (769)
..+++|++|++++|.+.. +|. +.++++|++|++++|.+....+..++++++|++|++++|.....+|..++++.+|++
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 456788999999888763 443 678889999999999876555555888999999999998666778888999999999
Q ss_pred EeccCCCCc-ccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEE
Q 046742 467 LNLSLTNIK-ELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVL 545 (769)
Q Consensus 467 L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L 545 (769)
|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+....+ ..+..+++|+.|
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p------~~l~~l~~L~~L 289 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIP------PSIFSLQKLISL 289 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCc------hhHhhccCcCEE
Confidence 999998887 68888999999999999988765677776 8889999999998887665544 456677888888
Q ss_pred EEEeccchh-hhhhhcccccccccceeeecccCCCccccccC--cccccCCCeEEEeccCCcceEEecc-----------
Q 046742 546 GINLTSSHA-LSKFLSSHRIQSYILHLRLELLEDSRSLNVLP--LANIKNLESLGFRNCEKLEELKIEI----------- 611 (769)
Q Consensus 546 ~l~~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l~~l~~~~----------- 611 (769)
+++.+.... ++..+. ...+++.|.+.+ +......+ +..+++|+.|++++|.....++...
T Consensus 290 ~Ls~n~l~~~~p~~~~---~l~~L~~L~l~~---n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L 363 (968)
T PLN00113 290 DLSDNSLSGEIPELVI---QLQNLEILHLFS---NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL 363 (968)
T ss_pred ECcCCeeccCCChhHc---CCCCCcEEECCC---CccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEEC
Confidence 887665432 221111 112344444433 22222222 5567778888877654332222211
Q ss_pred --ccccccccccccCccccccccEEEEecCcCCcccc-cccccCCccEEEEeecCcchhhcccccCCccccccCCccccc
Q 046742 612 --GNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLS-WLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFAR 688 (769)
Q Consensus 612 --~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~ 688 (769)
+.+....+ .....+++|+.|++.++.....++ .+..+++|+.|++++|..-..+ | ..+..+++
T Consensus 364 s~n~l~~~~p---~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~--------p---~~~~~l~~ 429 (968)
T PLN00113 364 STNNLTGEIP---EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL--------P---SEFTKLPL 429 (968)
T ss_pred CCCeeEeeCC---hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC--------C---hhHhcCCC
Confidence 11100000 000124566777776664333333 3566778888888765422222 2 24667899
Q ss_pred cceecccccccccccCCCCCCCCCccEEEecCC------------CCCCCCCCCCCCCCCcceEEEehhhhhcccccCcc
Q 046742 689 LELLILETLPKLKSIYPNALPFLHLKEIKVSNC------------PELKKLPLDSNSAKGHKIVIRGEESWWEELQWENQ 756 (769)
Q Consensus 689 L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~c------------~~L~~L~l~~n~~~~~~~~i~~~~~w~~~l~~~~~ 756 (769)
|+.|+++++.-...++.....+++|+.|++++| ++|+.|++++|++++..+...+...-...|....|
T Consensus 430 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 509 (968)
T PLN00113 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509 (968)
T ss_pred CCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCC
Confidence 999999996655555555667899999999876 46888999999998766543333333445555555
Q ss_pred ccc
Q 046742 757 ATQ 759 (769)
Q Consensus 757 ~~~ 759 (769)
...
T Consensus 510 ~l~ 512 (968)
T PLN00113 510 KLS 512 (968)
T ss_pred cce
Confidence 433
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=2.5e-18 Score=209.11 Aligned_cols=323 Identities=19% Similarity=0.304 Sum_probs=205.1
Q ss_pred eeEEEEeecccccccc----cCCCCCCCccEEEccCCCC-------cccchhhhcCC-CcceEEEecCCCCCcccccccc
Q 046742 392 QVIRRMSLMENQVQSL----SKIPSCPSLITLFLNNNNL-------KVITDGFFQFM-PSLKVLNLSNNQSLKQLPSGIS 459 (769)
Q Consensus 392 ~~l~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~~~~-------~~~~~~~~~~l-~~L~~L~L~~~~~~~~lp~~i~ 459 (769)
..++.+++....+..+ ..+.++++|+.|.+..+.. ..+|.+ |..+ .+|++|++.++ .++.+|..+
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~-~l~~lP~~f- 608 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKY-PLRCMPSNF- 608 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCC-CCCCCCCcC-
Confidence 4667766654444332 1267788888888865532 134444 3344 46888888887 677888776
Q ss_pred CCcCCCEEeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcC
Q 046742 460 RLVSLQHLNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLM 539 (769)
Q Consensus 460 ~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l 539 (769)
...+|+.|++++|++..+|..+..+++|+.|++++|..++.+|. ++.+++|++|++.+|.....+| ..+..+
T Consensus 609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp------~si~~L 680 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELP------SSIQYL 680 (1153)
T ss_pred CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccc------hhhhcc
Confidence 46788888888888888888888888888888888777777876 7788888888888877665555 456677
Q ss_pred cCCcEEEEEecc-chhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccc--ccc-
Q 046742 540 ENLNVLGINLTS-SHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIG--NIQ- 615 (769)
Q Consensus 540 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~--~~~- 615 (769)
++|+.|+++.+. ...++... ...+|..|.+.++..... .| ...++|++|+++++. ++.+|.... .+.
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i----~l~sL~~L~Lsgc~~L~~---~p-~~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~ 751 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGI----NLKSLYRLNLSGCSRLKS---FP-DISTNISWLDLDETA-IEEFPSNLRLENLDE 751 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcC----CCCCCCEEeCCCCCCccc---cc-cccCCcCeeecCCCc-ccccccccccccccc
Confidence 788888777543 22222211 123455555544432222 11 113466666665543 333332210 000
Q ss_pred ------------ccc-cccccCccccccccEEEEecCcCCccccc-ccccCCccEEEEeecCcchhhcccccCCcccccc
Q 046742 616 ------------QNV-CVSQVHGFQFHSLYYVVVSDCNKLRNLSW-LGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMR 681 (769)
Q Consensus 616 ------------~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~ 681 (769)
... .........+++|+.|++++|+.+..+|. ++.+++|+.|++++|..++.++..
T Consensus 752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~---------- 821 (1153)
T PLN03210 752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG---------- 821 (1153)
T ss_pred ccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC----------
Confidence 000 00000112357899999999988887764 788999999999999998877541
Q ss_pred CCccccccceeccccccccc--------------------ccCCCCCCCCCccEEEecCCCCCCCCCCCCCCC-CCcceE
Q 046742 682 NLNPFARLELLILETLPKLK--------------------SIYPNALPFLHLKEIKVSNCPELKKLPLDSNSA-KGHKIV 740 (769)
Q Consensus 682 ~~~~l~~L~~L~l~~c~~L~--------------------~~~~~~~~~~~L~~L~i~~c~~L~~L~l~~n~~-~~~~~~ 740 (769)
. .+++|+.|++++|..+. .+|.....+++|+.|++++|++|+.++...+.+ +.+.+.
T Consensus 822 -~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 822 -I-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899 (1153)
T ss_pred -C-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence 1 34555555555555544 444445567899999999999999999876553 344555
Q ss_pred EEehhh
Q 046742 741 IRGEES 746 (769)
Q Consensus 741 i~~~~~ 746 (769)
+.+|..
T Consensus 900 l~~C~~ 905 (1153)
T PLN03210 900 FSDCGA 905 (1153)
T ss_pred cCCCcc
Confidence 666643
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=9.4e-21 Score=196.55 Aligned_cols=313 Identities=24% Similarity=0.360 Sum_probs=208.7
Q ss_pred ceEEEecCCccccCCC-CCcceeEEEEeeccccccccc-CCCCCCCccEEEccCCCCc--ccchhhhcCCCcceEEEecC
Q 046742 372 ESFFVQAGARLTEAPE-TGKWQVIRRMSLMENQVQSLS-KIPSCPSLITLFLNNNNLK--VITDGFFQFMPSLKVLNLSN 447 (769)
Q Consensus 372 ~~~~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~L~~ 447 (769)
-.|+.-+...+..+|+ +..+.+|++|++..|++..+. .++.++.||.+.+..|+++ ++|+. +-.+..|.+||||.
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSH 112 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecch
Confidence 3667767767766653 567889999999999887654 4788999999999999775 78888 45599999999999
Q ss_pred CCCCccccccccCCcCCCEEeccCCCCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeecccccccc
Q 046742 448 NQSLKQLPSGISRLVSLQHLNLSLTNIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEV 526 (769)
Q Consensus 448 ~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 526 (769)
| .+++.|..+..-+++-+|+|++|+|..+|.. +-+|+.|-+|++++|. +..+|+. +..|.+|++|.+++|++...
T Consensus 113 N-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL~hf- 188 (1255)
T KOG0444|consen 113 N-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPLNHF- 188 (1255)
T ss_pred h-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChhhHH-
Confidence 9 8999999999999999999999999999987 6789999999999996 8999998 99999999999998765332
Q ss_pred chhhhHHHHhhcCcCCcEEEEEeccchhhhhhhcccccccccceeeecccCCCccccccC--cccccCCCeEEEeccCCc
Q 046742 527 ENCEVLMEEVLLMENLNVLGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLP--LANIKNLESLGFRNCEKL 604 (769)
Q Consensus 527 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l 604 (769)
.+..+.+++.|+.|.++...- .+.++........++..+.++ . .++..+| +-++++|..|+++++ .+
T Consensus 189 -----QLrQLPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS---~-N~Lp~vPecly~l~~LrrLNLS~N-~i 257 (1255)
T KOG0444|consen 189 -----QLRQLPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLS---E-NNLPIVPECLYKLRNLRRLNLSGN-KI 257 (1255)
T ss_pred -----HHhcCccchhhhhhhcccccc-hhhcCCCchhhhhhhhhcccc---c-cCCCcchHHHhhhhhhheeccCcC-ce
Confidence 234555666677776664321 222222222212222222222 1 1222233 456788888888874 45
Q ss_pred ceEEeccccccccccccccCccccccccEEEEecCcCCccccc-ccccCCccEEEEeec---------------------
Q 046742 605 EELKIEIGNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLSW-LGLAPNLLTIDILRC--------------------- 662 (769)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-l~~l~~L~~L~l~~c--------------------- 662 (769)
+.+..... ...+|++|+++.+ .|+.+|. +..++.|+.|.+.+.
T Consensus 258 teL~~~~~--------------~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 258 TELNMTEG--------------EWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFH 322 (1255)
T ss_pred eeeeccHH--------------HHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHH
Confidence 54443322 2445555665554 4444432 444444444433221
Q ss_pred ---CcchhhcccccCCccccccCCccccccceecccccccccccCCCCCCCCCccEEEecCCCCCCCC
Q 046742 663 ---PEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKLKSIYPNALPFLHLKEIKVSNCPELKKL 727 (769)
Q Consensus 663 ---~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~c~~L~~L 727 (769)
+.++.+ |+ .+..+++|+.|.|++ +.|-++|....-++.|+.|++.+.|+|..-
T Consensus 323 aanN~LElV--------PE---glcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 323 AANNKLELV--------PE---GLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred hhccccccC--------ch---hhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCC
Confidence 122222 11 444556666666643 667777766666777777777777777643
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=3.7e-19 Score=183.83 Aligned_cols=130 Identities=21% Similarity=0.351 Sum_probs=70.3
Q ss_pred cceeEEEEeecccccccccCCCCCC-CccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccc-cccCCcCCCEE
Q 046742 390 KWQVIRRMSLMENQVQSLSKIPSCP-SLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPS-GISRLVSLQHL 467 (769)
Q Consensus 390 ~~~~l~~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L 467 (769)
.+++|+.+++..|.++.+|.+...+ +|..|+|.+|.+..+....+..++.|++||||.| .+..+|. ++..-.++++|
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKL 178 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEE
Confidence 3445555555555555555554433 3555666665555555555555555566666555 4444443 24444555555
Q ss_pred eccCCCCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccc
Q 046742 468 NLSLTNIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCH 521 (769)
Q Consensus 468 ~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 521 (769)
+|++|.|+.+-.. +..+.+|..|.++.|. +..+|...+.+|++|+.|++..|.
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred eeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccc
Confidence 6655555544332 4455555555555554 455555555555555555555544
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=3.5e-20 Score=192.39 Aligned_cols=300 Identities=20% Similarity=0.310 Sum_probs=211.4
Q ss_pred CCcceeEEEEeecccccccccC-CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCC-ccccccccCCcCCC
Q 046742 388 TGKWQVIRRMSLMENQVQSLSK-IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSL-KQLPSGISRLVSLQ 465 (769)
Q Consensus 388 ~~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~~lp~~i~~l~~L~ 465 (769)
...++.++.|-+....+..+|. +..+.+|..|.+++|.+..+... ++.++.||.+++..|..- ..+|..|.+|..|.
T Consensus 28 v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt 106 (1255)
T KOG0444|consen 28 VEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLT 106 (1255)
T ss_pred HHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhccccccCCCCchhcccccce
Confidence 3456789999998888888876 78899999999999999888665 889999999999998432 35899999999999
Q ss_pred EEeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEE
Q 046742 466 HLNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVL 545 (769)
Q Consensus 466 ~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L 545 (769)
.|+|++|++++.|.++..-+++-.|++++|+ +..+|..++-+|+.|-.|++++|.+-.. | ..+..|.+|++|
T Consensus 107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~L-P------PQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEML-P------PQIRRLSMLQTL 178 (1255)
T ss_pred eeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhc-C------HHHHHHhhhhhh
Confidence 9999999999999999999999999999996 8999999999999999999998776433 3 456778888999
Q ss_pred EEEeccchhhhhhhcccccccccceeeecccCCCcc-cccc--CcccccCCCeEEEeccCCcceEEeccccccccccccc
Q 046742 546 GINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRS-LNVL--PLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQ 622 (769)
Q Consensus 546 ~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~--~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 622 (769)
.++.+...-.. .+...++.+|++....+... +... ++..+.+|..++++. .++..+|.-..
T Consensus 179 ~Ls~NPL~hfQ-----LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly---------- 242 (1255)
T KOG0444|consen 179 KLSNNPLNHFQ-----LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLY---------- 242 (1255)
T ss_pred hcCCChhhHHH-----HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHh----------
Confidence 88876653221 12222344444333332221 1122 255677888888864 45554443322
Q ss_pred cCccccccccEEEEecCcCCcccc-cccccCCccEEEEeecCcchhhccc-----------------ccCCccccccCCc
Q 046742 623 VHGFQFHSLYYVVVSDCNKLRNLS-WLGLAPNLLTIDILRCPEIEEISGQ-----------------YSGEVPEMMRNLN 684 (769)
Q Consensus 623 ~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~l~~~-----------------~~~~~~~~~~~~~ 684 (769)
.+++|+.|+++++ .++.+. ..+.-.+|++|+++. ++++.++.. .+.++|+ .++
T Consensus 243 ----~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS---GIG 313 (1255)
T KOG0444|consen 243 ----KLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS---GIG 313 (1255)
T ss_pred ----hhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCcc---chh
Confidence 3688999999987 566664 356667889998876 455555431 0122232 344
Q ss_pred cccccceecccccccccccCCCCCCCCCccEEEecCCCCCCCCCCCCCC
Q 046742 685 PFARLELLILETLPKLKSIYPNALPFLHLKEIKVSNCPELKKLPLDSNS 733 (769)
Q Consensus 685 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~c~~L~~L~l~~n~ 733 (769)
++..|+.++.++ ++|+-+|.+. ..|++|+.|.++.|+
T Consensus 314 KL~~Levf~aan-N~LElVPEgl-----------cRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 314 KLIQLEVFHAAN-NKLELVPEGL-----------CRCVKLQKLKLDHNR 350 (1255)
T ss_pred hhhhhHHHHhhc-cccccCchhh-----------hhhHHHHHhcccccc
Confidence 455555555555 4555555543 346666666666665
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.73 E-value=6.2e-19 Score=182.21 Aligned_cols=308 Identities=20% Similarity=0.231 Sum_probs=135.2
Q ss_pred ccccCCCCCcce-eEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc-cc
Q 046742 381 RLTEAPETGKWQ-VIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL-PS 456 (769)
Q Consensus 381 ~~~~~~~~~~~~-~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~ 456 (769)
.+..+|.+...+ ++++|++..|.++++.. +..++.||+|+|+.|.+..++...|..-.++++|+|++| .++.+ -.
T Consensus 113 ~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~ 191 (873)
T KOG4194|consen 113 ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETG 191 (873)
T ss_pred hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccc
Confidence 344444443332 35555555555544432 344455555555555555555444444445555555555 23222 23
Q ss_pred cccCCcCCCEEeccCCCCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHH
Q 046742 457 GISRLVSLQHLNLSLTNIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEE 535 (769)
Q Consensus 457 ~i~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 535 (769)
.|..+.+|-.|.|+.|.++.+|.. +.+|++|+.|++..|. ++.+.-..+.+|.+|+.|.+..|.+..... ..
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~D------G~ 264 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDD------GA 264 (873)
T ss_pred cccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccC------cc
Confidence 344444555555555555555543 3335555555555553 333322224555555555555444322211 11
Q ss_pred hhcCcCCcEEEEEeccchhhhhhhcccccccccceeeecccCCCcc--ccccCcccccCCCeEEEeccCCcceEEecccc
Q 046742 536 VLLMENLNVLGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRS--LNVLPLANIKNLESLGFRNCEKLEELKIEIGN 613 (769)
Q Consensus 536 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 613 (769)
+-.+.+++.|++..+.......- ..-.|..|+..++..+.. .....+..+++|+.|+++. ..++.++.+...
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g-----~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEG-----WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFR 338 (873)
T ss_pred eeeecccceeecccchhhhhhcc-----cccccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCChhHHH
Confidence 23344444444444333222110 000111111111111111 1111233334444444433 223333222211
Q ss_pred ccccccccccCccccccccEEEEecCcCCcccc--cccccCCccEEEEeecCcchhhcccccCCccccccCCccccccce
Q 046742 614 IQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLS--WLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLEL 691 (769)
Q Consensus 614 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~ 691 (769)
.++.|++|.++.+ .+.++. .+..+.+|++|++.+.. + .+.+-+....+.++++|+.
T Consensus 339 -------------~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~-l-------s~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 339 -------------VLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNE-L-------SWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred -------------HHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCe-E-------EEEEecchhhhccchhhhh
Confidence 1344455555443 333331 13344555555554311 1 0111111124556777777
Q ss_pred ecccccccccccCCCCCCCCCccEEEecCCCCCCCCCCCCCCCC
Q 046742 692 LILETLPKLKSIYPNALPFLHLKEIKVSNCPELKKLPLDSNSAK 735 (769)
Q Consensus 692 L~l~~c~~L~~~~~~~~~~~~L~~L~i~~c~~L~~L~l~~n~~~ 735 (769)
|.+.+ +++++++.. .+++.+.|+.|++++|-+-
T Consensus 397 L~l~g-Nqlk~I~kr----------Afsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 397 LRLTG-NQLKSIPKR----------AFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred eeecC-ceeeecchh----------hhccCcccceecCCCCcce
Confidence 77777 677777653 3567888888888888754
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.63 E-value=1.2e-17 Score=165.41 Aligned_cols=118 Identities=34% Similarity=0.549 Sum_probs=105.2
Q ss_pred CCCCcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCC
Q 046742 386 PETGKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQ 465 (769)
Q Consensus 386 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 465 (769)
++++.+.++..|.+..|.+..+|.|++|+.|..|++..|.++-+|.....++++|.+|||..| .+++.|..++.+.+|+
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLE 278 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhh
Confidence 567778888889999999999999999999999999999999999888889999999999999 8999999999999999
Q ss_pred EEeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccc
Q 046742 466 HLNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLI 506 (769)
Q Consensus 466 ~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i 506 (769)
+||+++|.|+.+|.++|++ .|+.|-+.||+ ++.+-.+.+
T Consensus 279 rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii 317 (565)
T KOG0472|consen 279 RLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREII 317 (565)
T ss_pred hhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHH
Confidence 9999999999999999999 99999999987 555554433
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.59 E-value=1.9e-18 Score=171.11 Aligned_cols=128 Identities=24% Similarity=0.378 Sum_probs=90.2
Q ss_pred CcceeEEEEeecccccccccC-CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcccccccc-CCcCCCE
Q 046742 389 GKWQVIRRMSLMENQVQSLSK-IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGIS-RLVSLQH 466 (769)
Q Consensus 389 ~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~-~l~~L~~ 466 (769)
-.++.+.+++...|.+..+|. +..+.+|.-|++..|.+..+|. |+++..|..|.+..| .++.+|.+.+ ++.+|.+
T Consensus 180 i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe--f~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 180 IAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE--FPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLV 256 (565)
T ss_pred HHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC--CCccHHHHHHHhccc-HHHhhHHHHhccccccee
Confidence 345667777777777766654 6667777777777777777763 677777777777777 6677776655 6777777
Q ss_pred EeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeecccc
Q 046742 467 LNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHY 522 (769)
Q Consensus 467 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 522 (769)
||++.|+++++|..+..+++|.+||+++|. +..+|.+ +++| .|+.|-+.+|++
T Consensus 257 LDLRdNklke~Pde~clLrsL~rLDlSNN~-is~Lp~s-Lgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 257 LDLRDNKLKEVPDEICLLRSLERLDLSNND-ISSLPYS-LGNL-HLKFLALEGNPL 309 (565)
T ss_pred eeccccccccCchHHHHhhhhhhhcccCCc-cccCCcc-cccc-eeeehhhcCCch
Confidence 777777777777777777777777777765 6667766 6777 677777776654
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=4e-14 Score=159.98 Aligned_cols=133 Identities=23% Similarity=0.235 Sum_probs=91.0
Q ss_pred ceEEEecCCccccCCCCCcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCC
Q 046742 372 ESFFVQAGARLTEAPETGKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSL 451 (769)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 451 (769)
...+..+...+..+|..- ..+++.|++.+|.++.+|.. .++|++|++++|.++.+|.. .++|++|++++| .+
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-~L 274 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-PL 274 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCC-ch
Confidence 444444555566555421 24688888888888877754 47888888888888877652 467888888888 56
Q ss_pred ccccccccCCcCCCEEeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccc
Q 046742 452 KQLPSGISRLVSLQHLNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYF 523 (769)
Q Consensus 452 ~~lp~~i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 523 (769)
..+|... .+|+.|++++|+++.+|.. +++|+.|++++|. +..+|.. ..+|+.|++++|.+.
T Consensus 275 ~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 275 THLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLT 335 (788)
T ss_pred hhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC----cccccccccccCccc
Confidence 6777532 4677888888888888753 4678888888885 5666652 235667777776553
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.52 E-value=4.9e-16 Score=169.69 Aligned_cols=102 Identities=29% Similarity=0.408 Sum_probs=86.4
Q ss_pred eeEEEEeecccccccccC-CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEecc
Q 046742 392 QVIRRMSLMENQVQSLSK-IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLS 470 (769)
Q Consensus 392 ~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~ 470 (769)
-+|..|++++|.+..+|. +..+.+|+.|+++.|.+..+|.. .+++++|++|+|.+| .+..+|.++..+++|++|+++
T Consensus 45 v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhcccccccc
Confidence 359999999999988876 78889999999999999999865 888999999999999 889999999999999999999
Q ss_pred CCCCcccchhhhcCCCCcEEecCCC
Q 046742 471 LTNIKELPEELKALVNLKCLNLDYT 495 (769)
Q Consensus 471 ~~~l~~lp~~~~~l~~L~~L~l~~~ 495 (769)
+|++..+|.-+..++.+..+..++|
T Consensus 123 ~N~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hhccCCCchhHHhhhHHHHHhhhcc
Confidence 9999988876655555544444444
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=1.6e-15 Score=133.33 Aligned_cols=165 Identities=24% Similarity=0.377 Sum_probs=126.7
Q ss_pred ccccCCCCCcceeEEEEeecccccccccC-CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcccccccc
Q 046742 381 RLTEAPETGKWQVIRRMSLMENQVQSLSK-IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGIS 459 (769)
Q Consensus 381 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~ 459 (769)
...+++.+...+++++|.++.|.++.+|. +..+.+|++|++++|.++++|.. ++.++.|+.|++.-| .+..+|..|+
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfg 99 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFG 99 (264)
T ss_pred cHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccC
Confidence 34455666777788888888888877655 78888888888888888888877 778888888888877 6777888888
Q ss_pred CCcCCCEEeccCCCCc--ccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhh
Q 046742 460 RLVSLQHLNLSLTNIK--ELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVL 537 (769)
Q Consensus 460 ~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 537 (769)
.++-|++|++.+|++. .+|-++..++-|+.|++++|. .+-+|.. ++++++||.|.+.+|..++. | ++++
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll~l-p------keig 170 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLLSL-P------KEIG 170 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchhhC-c------HHHH
Confidence 8888888888888776 588778888888888888886 5777777 78888888888887765543 2 5677
Q ss_pred cCcCCcEEEEEeccchhhh
Q 046742 538 LMENLNVLGINLTSSHALS 556 (769)
Q Consensus 538 ~l~~L~~L~l~~~~~~~~~ 556 (769)
.++.|+.|.+..+....++
T Consensus 171 ~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 171 DLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred HHHHHHHHhcccceeeecC
Confidence 7777777777765554444
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=4.5e-15 Score=130.48 Aligned_cols=168 Identities=26% Similarity=0.402 Sum_probs=137.6
Q ss_pred ccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCCCCcccchhhhcC
Q 046742 405 QSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNIKELPEELKAL 484 (769)
Q Consensus 405 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~~~~l 484 (769)
..++.+.+++++..|.+++|.++.+|+. +..+++|++|++++| .++++|.+++.+++|+.|+++-|++.-+|.++|.+
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 3456677889999999999999999998 788999999999999 89999999999999999999999999999999999
Q ss_pred CCCcEEecCCCcCcC-ccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEeccchhhhhhhcccc
Q 046742 485 VNLKCLNLDYTKSLC-RIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTSSHALSKFLSSHR 563 (769)
Q Consensus 485 ~~L~~L~l~~~~~l~-~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 563 (769)
+.|+.|++.+|+.-+ .+|.. +-.|+.|+.|++++|.+- .+| .+++.+++|++|.+.-+....+++-
T Consensus 102 p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe-~lp------~dvg~lt~lqil~lrdndll~lpke----- 168 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFE-ILP------PDVGKLTNLQILSLRDNDLLSLPKE----- 168 (264)
T ss_pred chhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCcc-cCC------hhhhhhcceeEEeeccCchhhCcHH-----
Confidence 999999999997555 45554 788999999999987652 333 5678999999999886665544431
Q ss_pred cccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEecc
Q 046742 564 IQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEI 611 (769)
Q Consensus 564 ~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~ 611 (769)
++.++.|++|+|.+ ..++.+|...
T Consensus 169 -----------------------ig~lt~lrelhiqg-nrl~vlppel 192 (264)
T KOG0617|consen 169 -----------------------IGDLTRLRELHIQG-NRLTVLPPEL 192 (264)
T ss_pred -----------------------HHHHHHHHHHhccc-ceeeecChhh
Confidence 45567788888877 4566555443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.42 E-value=5.9e-13 Score=151.63 Aligned_cols=116 Identities=28% Similarity=0.439 Sum_probs=74.5
Q ss_pred EEEEeecccccccccC-CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCC
Q 046742 394 IRRMSLMENQVQSLSK-IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLT 472 (769)
Q Consensus 394 l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 472 (769)
...|.+.++.++.+|. ++ +.|+.|++++|.++.+|...+ ++|++|++++| .++.+|..+. .+|+.|++++|
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcCC
Confidence 4556666666666654 22 467777777777777766532 46777777777 5666776543 36777777777
Q ss_pred CCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccc
Q 046742 473 NIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYF 523 (769)
Q Consensus 473 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 523 (769)
.+..+|..+. .+|+.|++++|+ +..+|.. + ..+|+.|++++|.+.
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l--~~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNK-ISCLPEN-L--PEELRYLSVYDNSIR 296 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCc-cCccccc-c--CCCCcEEECCCCccc
Confidence 7777776653 467777777664 5566654 2 246777777776543
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.41 E-value=1.2e-14 Score=159.02 Aligned_cols=238 Identities=21% Similarity=0.266 Sum_probs=145.3
Q ss_pred ceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEecc
Q 046742 391 WQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLS 470 (769)
Q Consensus 391 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~ 470 (769)
+.+++.+....|.+..+. -.-++|+.|+.+.|.+..+... ..-.+|++++++.| .+..+|+.++.+.+|+.+++.
T Consensus 198 ~~~l~~l~c~rn~ls~l~--~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSELE--ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHN-NLSNLPEWIGACANLEALNAN 272 (1081)
T ss_pred ccchhhhhhhhcccceEE--ecCcchheeeeccCcceeeccc--cccccceeeecchh-hhhcchHHHHhcccceEeccc
Confidence 334555555555544331 2346778888888877755443 23467999999998 788889888999999999999
Q ss_pred CCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCc-CCcEEEEEe
Q 046742 471 LTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLME-NLNVLGINL 549 (769)
Q Consensus 471 ~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~ 549 (769)
+|.+..+|..+...++|+.|.+..|. +..+|+. ...+++|++|++..|.+....... +..+. .|+.++.+.
T Consensus 273 ~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~-le~~~sL~tLdL~~N~L~~lp~~~------l~v~~~~l~~ln~s~ 344 (1081)
T KOG0618|consen 273 HNRLVALPLRISRITSLVSLSAAYNE-LEYIPPF-LEGLKSLRTLDLQSNNLPSLPDNF------LAVLNASLNTLNVSS 344 (1081)
T ss_pred chhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCc-ccccceeeeeeehhccccccchHH------HhhhhHHHHHHhhhh
Confidence 99999999999999999999999886 7888886 777999999999888765443311 11111 133333333
Q ss_pred ccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccCccccc
Q 046742 550 TSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFH 629 (769)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 629 (769)
+....++..- ......+..|.+.+- ..++-...++.++++|+.|+++. ..+..+|..... .+.
T Consensus 345 n~l~~lp~~~--e~~~~~Lq~LylanN-~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~-------------kle 407 (1081)
T KOG0618|consen 345 NKLSTLPSYE--ENNHAALQELYLANN-HLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLR-------------KLE 407 (1081)
T ss_pred cccccccccc--chhhHHHHHHHHhcC-cccccchhhhccccceeeeeecc-cccccCCHHHHh-------------chH
Confidence 3322222110 011112233333221 11222224477788888888876 456656554432 355
Q ss_pred cccEEEEecCcCCccccc-ccccCCccEEEE
Q 046742 630 SLYYVVVSDCNKLRNLSW-LGLAPNLLTIDI 659 (769)
Q Consensus 630 ~L~~L~l~~c~~l~~l~~-l~~l~~L~~L~l 659 (769)
.|++|+++++ +|+.++. +..++.|++|..
T Consensus 408 ~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 408 ELEELNLSGN-KLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HhHHHhcccc-hhhhhhHHHHhhhhhHHHhh
Confidence 6666666665 4554432 334444554444
No 19
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.38 E-value=3.7e-11 Score=130.61 Aligned_cols=287 Identities=13% Similarity=0.075 Sum_probs=164.5
Q ss_pred CCCCCchHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGE----EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIAR 131 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 131 (769)
+.++||++++++|...+.+ ...+.+.|+|++|+|||++++.++++.. .....-..+++++....+...++..+++
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~-~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE-EIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 6789999999999998843 3456788999999999999999999872 2222335677888777788899999999
Q ss_pred HhCCCCcccccccHHHHHHHHHHHHc--cCCEEEEEecccCcc------cccccCCCCCCC-CCCcEEEEeeccCCcccc
Q 046742 132 KIGLYDQSWKNKRLEIKAADIFKILS--RKKFVLLLDDIWNRV------DLEKLGIPPMNT-NGSSKIVFTTRSAGGCGL 202 (769)
Q Consensus 132 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~~~~~~~-~~~~~iivTtR~~~v~~~ 202 (769)
++..........+.++....+.+.+. ++..+||||+++... .+..+...+... +.+..+|.++....+...
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~ 188 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYI 188 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhh
Confidence 98652211133456667777777775 356899999998642 122221111111 113336666665543222
Q ss_pred cc-------ccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHc----CCchhHHHHHHHHh--c--C-C
Q 046742 203 ME-------AHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKEC----DGLPLALITIGRAM--A--F-K 266 (769)
Q Consensus 203 ~~-------~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~----~g~Plai~~~~~~l--~--~-~ 266 (769)
.. ....+.+++++.++..+++...+...- ....-..+.++.+++.+ |..+.|+..+-... + . .
T Consensus 189 l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~-~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 189 LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF-YPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc-ccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 11 124679999999999999988763211 00011134444444444 55777777664321 1 1 1
Q ss_pred --CChhHHHHHHHHHHhc--ccCCCChhhhhhHHhhhcC--CC-CCCccchhHHHHH--Hhhc--Cccc-cchhHhHHHH
Q 046742 267 --KTPQEWKDAIQVLRRS--ASEFPGMDEIKSCFLYCCL--FP-EDCDISKIDLIDC--WIGE--GFFD-EYDRGYTIIG 334 (769)
Q Consensus 267 --~~~~~w~~~l~~l~~~--~~~~~~~~~~k~cfl~~s~--fp-~~~~i~~~~li~~--w~a~--g~~~-~~~~~~~~~~ 334 (769)
-+.+..+.+++.+... ...+..+...+..+++.-+ .. ....+...++... .+++ |.-. ......+++.
T Consensus 268 ~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~ 347 (394)
T PRK00411 268 RKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYIN 347 (394)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHH
Confidence 2556666666655322 1123333334444444321 11 1123344443322 1221 2211 1124556777
Q ss_pred HHHHhhcccc
Q 046742 335 DLLRACLLEE 344 (769)
Q Consensus 335 ~L~~~sll~~ 344 (769)
.|.+.+++..
T Consensus 348 ~L~~~glI~~ 357 (394)
T PRK00411 348 KLDMLGIINT 357 (394)
T ss_pred HHHhcCCeEE
Confidence 7777777764
No 20
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.37 E-value=5.3e-11 Score=144.35 Aligned_cols=288 Identities=15% Similarity=0.195 Sum_probs=178.5
Q ss_pred ccccCCCCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc-cccHHHHHH
Q 046742 49 TVEERPIPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR-DLQIDRLQE 127 (769)
Q Consensus 49 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~ 127 (769)
..||+..+.+|-|+.-++++.+. ...+++.|+|++|.||||++.++.++. + .++|+.+.. +.+...+..
T Consensus 7 ~~~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~ 76 (903)
T PRK04841 7 LSRPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFAS 76 (903)
T ss_pred cCCCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHH
Confidence 34555667888898776666432 456899999999999999999998653 2 489999864 446666777
Q ss_pred HHHHHhCCCCcc-----------cccccHHHHHHHHHHHHc--cCCEEEEEecccCccc--cc-ccCCCCCCCCCCcEEE
Q 046742 128 NIARKIGLYDQS-----------WKNKRLEIKAADIFKILS--RKKFVLLLDDIWNRVD--LE-KLGIPPMNTNGSSKIV 191 (769)
Q Consensus 128 ~i~~~l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~--~~-~~~~~~~~~~~~~~ii 191 (769)
.++..+...... ....+.......+...+. +.+++|||||++...+ .. .+...+.....+.++|
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv 156 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLV 156 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEE
Confidence 777776421110 011222333444444443 5789999999976431 11 2221222334567888
Q ss_pred EeeccCCcccc--cc-ccceEEcC----CCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHHHhc
Q 046742 192 FTTRSAGGCGL--ME-AHRIFKVK----CLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGRAMA 264 (769)
Q Consensus 192 vTtR~~~v~~~--~~-~~~~~~l~----~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~ 264 (769)
||||....... .. .....++. +|+.+|+.++|....+..- ..+.+..+++.|+|.|+++..++..+.
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 99998532211 11 12345565 9999999999987765322 256788999999999999999987765
Q ss_pred CCCC-hh--HH-------HHHHHHHHhc-ccCCCChhhhhhHHhhhcCCCCCCccchhHHHHHHhhcCccccchhHhHHH
Q 046742 265 FKKT-PQ--EW-------KDAIQVLRRS-ASEFPGMDEIKSCFLYCCLFPEDCDISKIDLIDCWIGEGFFDEYDRGYTII 333 (769)
Q Consensus 265 ~~~~-~~--~w-------~~~l~~l~~~-~~~~~~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~ 333 (769)
.... .. .| ..+.+.+... ...++ +..+..+...|+++ .+ +.+ +... +. +.+.+.+.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~--~~~~~~l~~~a~~~-~~--~~~-l~~~-----l~-~~~~~~~~L 298 (903)
T PRK04841 231 QNNSSLHDSARRLAGINASHLSDYLVEEVLDNVD--LETRHFLLRCSVLR-SM--NDA-LIVR-----VT-GEENGQMRL 298 (903)
T ss_pred hCCCchhhhhHhhcCCCchhHHHHHHHHHHhcCC--HHHHHHHHHhcccc-cC--CHH-HHHH-----Hc-CCCcHHHHH
Confidence 4321 11 01 1111111111 12222 22888888899886 33 322 2221 11 122456789
Q ss_pred HHHHHhhcccc-c--CCCceEEhHHHHHHHHHHH
Q 046742 334 GDLLRACLLEE-V--NDNNVKLHDVIRDMGLWIA 364 (769)
Q Consensus 334 ~~L~~~sll~~-~--~~~~~~mhdl~~~~~~~~~ 364 (769)
..|.+.+++.. . +...|..|++++++.+...
T Consensus 299 ~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 299 EELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 99999999753 2 2347889999999988765
No 21
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.33 E-value=1.7e-12 Score=130.54 Aligned_cols=195 Identities=19% Similarity=0.177 Sum_probs=103.7
Q ss_pred CCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHH---------HH
Q 046742 58 TLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQ---------EN 128 (769)
Q Consensus 58 ~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~---------~~ 128 (769)
|+||++|+++|.+++..+..+.+.|+|+.|+|||+|++++.+.. +..-..++|+............ ..
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~---~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL---KEKGYKVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC---T--EECCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh---hhcCCcEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 79999999999999987777899999999999999999999987 2221234455443332221111 11
Q ss_pred HHHHhCC--CCcc------cccccHHHHHHHHHHHHc--cCCEEEEEecccCcc-ccc-------cc---CCCCCCCCCC
Q 046742 129 IARKIGL--YDQS------WKNKRLEIKAADIFKILS--RKKFVLLLDDIWNRV-DLE-------KL---GIPPMNTNGS 187 (769)
Q Consensus 129 i~~~l~~--~~~~------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~~~-------~~---~~~~~~~~~~ 187 (769)
+.+.+.. +... ............+.+.+. +++++||+||++... ... .+ ...... ..+
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCC
Confidence 1122211 1000 011223333444444443 356999999997655 111 11 111112 233
Q ss_pred cEEEEeeccCCccc--------cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHH
Q 046742 188 SKIVFTTRSAGGCG--------LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALIT 258 (769)
Q Consensus 188 ~~iivTtR~~~v~~--------~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 258 (769)
..+|+++.+..+.. .......+.+++|+.+++++++....... ... +...+..++|+..+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 44555544332221 12334459999999999999999865433 111 22367779999999999998864
No 22
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.31 E-value=3.9e-10 Score=115.82 Aligned_cols=182 Identities=15% Similarity=0.196 Sum_probs=115.1
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHH
Q 046742 74 EEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIF 153 (769)
Q Consensus 74 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 153 (769)
+.+.+.++|+|++|+||||+++.+++.. .. +.. .++|+. ....+..+++..++..++.... ..+.......+.
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~ 112 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKLV-NTRVDAEDLLRMVAADFGLETE---GRDKAALLRELE 112 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeeee-CCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHH
Confidence 3456689999999999999999999987 21 221 223432 3344677889999999887542 222223333333
Q ss_pred HH-----HccCCEEEEEecccCcc--cccccCC---CCCCCCCCcEEEEeeccCCcccc--------c--cccceEEcCC
Q 046742 154 KI-----LSRKKFVLLLDDIWNRV--DLEKLGI---PPMNTNGSSKIVFTTRSAGGCGL--------M--EAHRIFKVKC 213 (769)
Q Consensus 154 ~~-----l~~k~~LlVlDdv~~~~--~~~~~~~---~~~~~~~~~~iivTtR~~~v~~~--------~--~~~~~~~l~~ 213 (769)
+. ..+++.++|+||++... .++.+.. ..........|++|.... .... . +....+++++
T Consensus 113 ~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~ 191 (269)
T TIGR03015 113 DFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGP 191 (269)
T ss_pred HHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCC
Confidence 32 25688999999998753 2333321 111122233455655432 1100 0 1234678999
Q ss_pred CCHHHHHHHHHhhhCCCccC-CCCCHHHHHHHHHHHcCCchhHHHHHHHHh
Q 046742 214 LEHKEAWELFQMKVGRETLE-SHLQIPELAEIVAKECDGLPLALITIGRAM 263 (769)
Q Consensus 214 l~~~~a~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 263 (769)
++.+|..+++...+...... ...-..+..+.|++.++|.|..|+.++..+
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999999998876433211 112336889999999999999999998776
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=7.4e-12 Score=142.75 Aligned_cols=239 Identities=24% Similarity=0.262 Sum_probs=150.3
Q ss_pred EecCCccccCCCCCcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcccc
Q 046742 376 VQAGARLTEAPETGKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLP 455 (769)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp 455 (769)
......+..+|.. -.++++.|++.+|.++.+|... +.+|++|++++|.++.+|... ..+|+.|+|++| .+..+|
T Consensus 184 ~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N-~L~~LP 257 (754)
T PRK15370 184 RLKILGLTTIPAC-IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATL---PDTIQEMELSIN-RITELP 257 (754)
T ss_pred EeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhh---hccccEEECcCC-ccCcCC
Confidence 3344455555531 1246788888888887776522 357888888888888777652 246888888888 566777
Q ss_pred ccccCCcCCCEEeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHH
Q 046742 456 SGISRLVSLQHLNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEE 535 (769)
Q Consensus 456 ~~i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 535 (769)
..+. .+|++|++++|++..+|..+. .+|+.|++++|+ +..+|.. + ..+|+.|++++|.+..
T Consensus 258 ~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-l--p~sL~~L~Ls~N~Lt~----------- 318 (754)
T PRK15370 258 ERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-L--PSGITHLNVQSNSLTA----------- 318 (754)
T ss_pred hhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-c--hhhHHHHHhcCCcccc-----------
Confidence 7654 478888888888887776553 478888888875 5666653 2 1345555555443211
Q ss_pred hhcCcCCcEEEEEeccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEecccccc
Q 046742 536 VLLMENLNVLGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQ 615 (769)
Q Consensus 536 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 615 (769)
.|..-.++|+.|++++|. ++.+|..
T Consensus 319 -------------------------------------------------LP~~l~~sL~~L~Ls~N~-Lt~LP~~----- 343 (754)
T PRK15370 319 -------------------------------------------------LPETLPPGLKTLEAGENA-LTSLPAS----- 343 (754)
T ss_pred -------------------------------------------------CCccccccceeccccCCc-cccCChh-----
Confidence 000112467777777753 4434321
Q ss_pred ccccccccCccccccccEEEEecCcCCcccccccccCCccEEEEeecCcchhhcccccCCccccccCCccccccceeccc
Q 046742 616 QNVCVSQVHGFQFHSLYYVVVSDCNKLRNLSWLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILE 695 (769)
Q Consensus 616 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 695 (769)
..++|+.|++++| +++.+|. ...++|+.|++++| .+..++. .+ .+.|+.|+++
T Consensus 344 -----------l~~sL~~L~Ls~N-~L~~LP~-~lp~~L~~LdLs~N-~Lt~LP~-----------~l--~~sL~~LdLs 396 (754)
T PRK15370 344 -----------LPPELQVLDVSKN-QITVLPE-TLPPTITTLDVSRN-ALTNLPE-----------NL--PAALQIMQAS 396 (754)
T ss_pred -----------hcCcccEEECCCC-CCCcCCh-hhcCCcCEEECCCC-cCCCCCH-----------hH--HHHHHHHhhc
Confidence 1368999999988 5666653 23578999999986 4555533 11 2468899999
Q ss_pred ccccccccCCCCC----CCCCccEEEecCCC
Q 046742 696 TLPKLKSIYPNAL----PFLHLKEIKVSNCP 722 (769)
Q Consensus 696 ~c~~L~~~~~~~~----~~~~L~~L~i~~c~ 722 (769)
+ +++..+|.... .++.+..|.+.+.|
T Consensus 397 ~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 397 R-NNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred c-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 8 67777775322 23556666666543
No 24
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.29 E-value=9.9e-10 Score=118.18 Aligned_cols=289 Identities=12% Similarity=0.114 Sum_probs=160.4
Q ss_pred CCCCCchHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCC---cEEEEEEeCccccHHHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGE----EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGF---DFVIWVVLSRDLQIDRLQEN 128 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~~ 128 (769)
+.++||++++++|..++.+ ...+.+.|+|++|+|||++++.+++......... -..+|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 5789999999999999853 3456789999999999999999998762111111 24678888777778889999
Q ss_pred HHHHh---CCCCcccccccHHHHHHHHHHHHc--cCCEEEEEecccCcc--c---ccccCCCC-CCC--CCCcEEEEeec
Q 046742 129 IARKI---GLYDQSWKNKRLEIKAADIFKILS--RKKFVLLLDDIWNRV--D---LEKLGIPP-MNT--NGSSKIVFTTR 195 (769)
Q Consensus 129 i~~~l---~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--~---~~~~~~~~-~~~--~~~~~iivTtR 195 (769)
|++++ +...+. ...+.++....+.+.+. +++++||||+++... . +..+.... ... +.+..+|.++.
T Consensus 95 i~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 95 LANQLRGSGEEVPT-TGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHhhcCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 99988 332211 22344555666666664 567899999998652 1 22221110 111 12344555555
Q ss_pred cCCcccccc-------ccceEEcCCCCHHHHHHHHHhhhCCC--ccCCCCCHHHHHHHHHHHcCCchhHH-HHHHHHh--
Q 046742 196 SAGGCGLME-------AHRIFKVKCLEHKEAWELFQMKVGRE--TLESHLQIPELAEIVAKECDGLPLAL-ITIGRAM-- 263 (769)
Q Consensus 196 ~~~v~~~~~-------~~~~~~l~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~~~g~Plai-~~~~~~l-- 263 (769)
.......+. ....+.+++++.++..+++..++... ....+.+..+.+..++....|.|..+ ..+-...
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 443211111 12468999999999999999887421 11122222344555666667887443 3322111
Q ss_pred --cC---CCChhHHHHHHHHHHhc--ccCCCChhhhhhHHhhh-cC--CCCCCccchhHHHHHH--hhcCc-cccc--hh
Q 046742 264 --AF---KKTPQEWKDAIQVLRRS--ASEFPGMDEIKSCFLYC-CL--FPEDCDISKIDLIDCW--IGEGF-FDEY--DR 328 (769)
Q Consensus 264 --~~---~~~~~~w~~~l~~l~~~--~~~~~~~~~~k~cfl~~-s~--fp~~~~i~~~~li~~w--~a~g~-~~~~--~~ 328 (769)
.. .-+.+..+.+.+.+... ...+.+++..+..+++. +. -.++..+...++...+ +++.+ +.+. ..
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 333 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIEKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDPLTQRR 333 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 11 13445555555544322 11122222222222221 10 0123334555555422 12211 1111 15
Q ss_pred HhHHHHHHHHhhccccc
Q 046742 329 GYTIIGDLLRACLLEEV 345 (769)
Q Consensus 329 ~~~~~~~L~~~sll~~~ 345 (769)
..+++..|...|++...
T Consensus 334 ~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 334 ISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHHHHHhcCCeEEE
Confidence 56677788888888653
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.28 E-value=1.4e-11 Score=139.55 Aligned_cols=259 Identities=20% Similarity=0.154 Sum_probs=172.9
Q ss_pred EEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCCC
Q 046742 394 IRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTN 473 (769)
Q Consensus 394 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~ 473 (769)
-..|+++++.++.+|.-. ..+|+.|++.+|.++.+|.. +++|++|++++| .++.+|.. ..+|+.|++++|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL----PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC----CCCCcEEEecCC-ccCcccCc---ccccceeeccCCc
Confidence 456788899998888722 25899999999999998763 589999999999 77788854 4688999999999
Q ss_pred CcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEeccch
Q 046742 474 IKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTSSH 553 (769)
Q Consensus 474 l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 553 (769)
++.+|.. ..+|+.|++++|. +..+|.. +++|+.|++++|.+... +. ...+|+.|.+..+...
T Consensus 274 L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~----p~~L~~LdLS~N~L~~L-p~---------lp~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 274 LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLASL-PA---------LPSELCKLWAYNNQLT 335 (788)
T ss_pred hhhhhhc---hhhcCEEECcCCc-ccccccc----ccccceeECCCCccccC-CC---------CcccccccccccCccc
Confidence 9988863 3678899999996 7788863 47899999999876542 21 1134555666655554
Q ss_pred hhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccCccccccccE
Q 046742 554 ALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSLYY 633 (769)
Q Consensus 554 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 633 (769)
.++.+ ..+|..|.+++. .... .| ...++|+.|+++++ .+..+|. ...+|+.
T Consensus 336 ~LP~l------p~~Lq~LdLS~N---~Ls~-LP-~lp~~L~~L~Ls~N-~L~~LP~-----------------l~~~L~~ 386 (788)
T PRK15387 336 SLPTL------PSGLQELSVSDN---QLAS-LP-TLPSELYKLWAYNN-RLTSLPA-----------------LPSGLKE 386 (788)
T ss_pred ccccc------ccccceEecCCC---ccCC-CC-CCCcccceehhhcc-ccccCcc-----------------cccccce
Confidence 44321 234555555432 1111 11 01245666666553 3333321 1346888
Q ss_pred EEEecCcCCcccccccccCCccEEEEeecCcchhhcccccCCccccccCCccccccceecccccccccccCCCCCCCCCc
Q 046742 634 VVVSDCNKLRNLSWLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKLKSIYPNALPFLHL 713 (769)
Q Consensus 634 L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~L 713 (769)
|+++++ .++.+|.. .++|+.|+++++ .+..++. .+.+|+.|++++ ++++++|..
T Consensus 387 LdLs~N-~Lt~LP~l--~s~L~~LdLS~N-~LssIP~--------------l~~~L~~L~Ls~-NqLt~LP~s------- 440 (788)
T PRK15387 387 LIVSGN-RLTSLPVL--PSELKELMVSGN-RLTSLPM--------------LPSGLLSLSVYR-NQLTRLPES------- 440 (788)
T ss_pred EEecCC-cccCCCCc--ccCCCEEEccCC-cCCCCCc--------------chhhhhhhhhcc-CcccccChH-------
Confidence 888876 55666543 467888888874 3444322 124577788887 667777653
Q ss_pred cEEEecCCCCCCCCCCCCCCCCCcc
Q 046742 714 KEIKVSNCPELKKLPLDSNSAKGHK 738 (769)
Q Consensus 714 ~~L~i~~c~~L~~L~l~~n~~~~~~ 738 (769)
+.++++|+.|++++|.+++..
T Consensus 441 ----l~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 441 ----LIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred ----HhhccCCCeEECCCCCCCchH
Confidence 456778888888999888754
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.27 E-value=3.7e-12 Score=147.46 Aligned_cols=315 Identities=23% Similarity=0.284 Sum_probs=185.4
Q ss_pred cCCCCCcceeEEEEeecccc--cccccC--CCCCCCccEEEccCC-CCcccchhhhcCCCcceEEEecCCCCCccccccc
Q 046742 384 EAPETGKWQVIRRMSLMENQ--VQSLSK--IPSCPSLITLFLNNN-NLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGI 458 (769)
Q Consensus 384 ~~~~~~~~~~l~~L~l~~~~--~~~~~~--~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i 458 (769)
.++....++.++.|-+..|. +..++. +..++.||+|++++| .+.++|.. ++.+-+||||+++++ .+..+|..+
T Consensus 537 ~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t-~I~~LP~~l 614 (889)
T KOG4658|consen 537 HIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT-GISHLPSGL 614 (889)
T ss_pred hccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC-CccccchHH
Confidence 34444455579999998885 566666 788999999999988 56778776 899999999999999 889999999
Q ss_pred cCCcCCCEEeccCCC-CcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhh
Q 046742 459 SRLVSLQHLNLSLTN-IKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVL 537 (769)
Q Consensus 459 ~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 537 (769)
++|..|.+|++..+. +..+|.....|.+|++|.+.... .......++.+.+|++|....+..... ..++.+.
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s~-----~~~e~l~ 687 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISSV-----LLLEDLL 687 (889)
T ss_pred HHHHhhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecchh-----HhHhhhh
Confidence 999999999999985 44556666779999999997654 122222255556666665554322211 1112222
Q ss_pred cCcCCcEEEEEec-cchhhhhhhcccccccccceeeecccCCCccccc----cCcc-cccCCCeEEEeccCCcceEEecc
Q 046742 538 LMENLNVLGINLT-SSHALSKFLSSHRIQSYILHLRLELLEDSRSLNV----LPLA-NIKNLESLGFRNCEKLEELKIEI 611 (769)
Q Consensus 538 ~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~----~~l~-~l~~L~~L~l~~~~~l~~l~~~~ 611 (769)
.++.|..+..... ................+++.|++.++........ .... .++++..+.+.+|..++. ..|
T Consensus 688 ~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~--l~~ 765 (889)
T KOG4658|consen 688 GMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD--LTW 765 (889)
T ss_pred hhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc--cch
Confidence 2222221111110 0011222223334445778888877766432210 0011 245667777777777663 222
Q ss_pred ccccccccccccCccccccccEEEEecCcCCccccc-ccccCCccEEEEeecCcchhhc-ccccCCccccccCCcccccc
Q 046742 612 GNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLSW-LGLAPNLLTIDILRCPEIEEIS-GQYSGEVPEMMRNLNPFARL 689 (769)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-l~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~~~~~~~~~l~~L 689 (769)
.. ..++|+.|.+..|+.++.+.+ ...+..++.+.+ .+..++.+. ....++.+.....--.+++|
T Consensus 766 ~~-------------f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~-~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l 831 (889)
T KOG4658|consen 766 LL-------------FAPHLTSLSLVSCRLLEDIIPKLKALLELKELIL-PFNKLEGLRMLCSLGGLPQLYWLPLSFLKL 831 (889)
T ss_pred hh-------------ccCcccEEEEecccccccCCCHHHHhhhcccEEe-cccccccceeeecCCCCceeEecccCccch
Confidence 22 358999999999988877643 333444443222 222222221 11111111111111223446
Q ss_pred ceecccccccccccCCCCCCCCCccEEEecCC-CCCCCCCCC
Q 046742 690 ELLILETLPKLKSIYPNALPFLHLKEIKVSNC-PELKKLPLD 730 (769)
Q Consensus 690 ~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~c-~~L~~L~l~ 730 (769)
+.+.++.||++.+ +|.+.++.+.+| +++..+|-.
T Consensus 832 ~~~~ve~~p~l~~-------~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 832 EELIVEECPKLGK-------LPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred hheehhcCccccc-------CccccccceeccccceeecCCc
Confidence 6666666666655 455666677786 777766654
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.26 E-value=2.2e-13 Score=135.49 Aligned_cols=148 Identities=26% Similarity=0.330 Sum_probs=125.7
Q ss_pred eEEEecCCccccCCCCCcceeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCC
Q 046742 373 SFFVQAGARLTEAPETGKWQVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQS 450 (769)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 450 (769)
..+...+.++.++|..- ......+.+..|.++.+|+ |..+++||.|+|++|.|+.|.++.|.+++.|..|-+.++..
T Consensus 49 ~~VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred ceEEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 34555677777776422 2367788899999999987 89999999999999999999999999999999888888558
Q ss_pred Ccccccc-ccCCcCCCEEeccCCCCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeecccc
Q 046742 451 LKQLPSG-ISRLVSLQHLNLSLTNIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHY 522 (769)
Q Consensus 451 ~~~lp~~-i~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 522 (769)
++++|.. |++|..|+.|.+.-|++..++.. +..|++|..|.+.+|. +..++.+.+..+..++++.+..|.+
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCcc
Confidence 9999974 89999999999999999976655 8999999999999996 7889987799999999999887664
No 28
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.16 E-value=3.6e-09 Score=116.59 Aligned_cols=296 Identities=16% Similarity=0.177 Sum_probs=192.7
Q ss_pred CCCccccCCCCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHH
Q 046742 46 PEPTVEERPIPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDR 124 (769)
Q Consensus 46 ~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ 124 (769)
+...++|.+....|-|..-.+.+.+ ..+.+.+.|..|+|.||||++.+.+... ..-..+.|++...+ .+...
T Consensus 9 ~sk~~~P~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~r 81 (894)
T COG2909 9 PSKLVRPVRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPAR 81 (894)
T ss_pred ccccCCCCCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHH
Confidence 3444555556777888866655544 2478899999999999999999998743 33346899998765 47888
Q ss_pred HHHHHHHHhCCCCc-----------ccccccHHHHHHHHHHHHcc--CCEEEEEecccCccc--c-cccCCCCCCCCCCc
Q 046742 125 LQENIARKIGLYDQ-----------SWKNKRLEIKAADIFKILSR--KKFVLLLDDIWNRVD--L-EKLGIPPMNTNGSS 188 (769)
Q Consensus 125 ~~~~i~~~l~~~~~-----------~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~--~-~~~~~~~~~~~~~~ 188 (769)
+++.++.+++...+ ..+..+...+.+.+...+.. ++..+||||..-..+ + ..+...+....++-
T Consensus 82 F~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l 161 (894)
T COG2909 82 FLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENL 161 (894)
T ss_pred HHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCe
Confidence 99988888863221 11334455556666665553 689999999864422 1 12222234455678
Q ss_pred EEEEeeccCCcccc--c-cccceEEc----CCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHH
Q 046742 189 KIVFTTRSAGGCGL--M-EAHRIFKV----KCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGR 261 (769)
Q Consensus 189 ~iivTtR~~~v~~~--~-~~~~~~~l----~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 261 (769)
.+|||||+..-... + -....+++ =.|+.+|+.++|....+..- .+..++.+.+..+|-+-|+..++=
T Consensus 162 ~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 162 TLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred EEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHH
Confidence 99999998754221 1 12233333 36889999999988764332 256688999999999999999987
Q ss_pred HhcCCCChhHHHHHH--------HHHHhc-ccCCCChhhhhhHHhhhcCCCCCCccchhHHHHHHhhcCccccchhHhHH
Q 046742 262 AMAFKKTPQEWKDAI--------QVLRRS-ASEFPGMDEIKSCFLYCCLFPEDCDISKIDLIDCWIGEGFFDEYDRGYTI 332 (769)
Q Consensus 262 ~l~~~~~~~~w~~~l--------~~l~~~-~~~~~~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~ 332 (769)
.++++.+.+.-...+ +.+... .+.++.. +|..++-+|+++.- -.+++..- .+.+.+...
T Consensus 236 a~~~~~~~~q~~~~LsG~~~~l~dYL~eeVld~Lp~~--l~~FLl~~svl~~f----~~eL~~~L------tg~~ng~am 303 (894)
T COG2909 236 ALRNNTSAEQSLRGLSGAASHLSDYLVEEVLDRLPPE--LRDFLLQTSVLSRF----NDELCNAL------TGEENGQAM 303 (894)
T ss_pred HccCCCcHHHHhhhccchHHHHHHHHHHHHHhcCCHH--HHHHHHHHHhHHHh----hHHHHHHH------hcCCcHHHH
Confidence 777444433322211 111111 1222222 78888888887531 12344332 222257778
Q ss_pred HHHHHHhhccccc---CCCceEEhHHHHHHHHHHHhh
Q 046742 333 IGDLLRACLLEEV---NDNNVKLHDVIRDMGLWIASE 366 (769)
Q Consensus 333 ~~~L~~~sll~~~---~~~~~~mhdl~~~~~~~~~~~ 366 (769)
+++|.+++||-.. ....|+.|.++.++.+.-...
T Consensus 304 Le~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 304 LEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 9999999999643 578999999999998765543
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.14 E-value=3.4e-09 Score=110.85 Aligned_cols=267 Identities=15% Similarity=0.096 Sum_probs=147.4
Q ss_pred CCCCCchHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLG-----EEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIA 130 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~-----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 130 (769)
..|||+++.+++|..++. ......+.++|++|+|||+||+.+++.. ...+ ..+..+.......+ ...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchhH-HHHH
Confidence 568999999999999885 2345678899999999999999999987 2222 12222111122222 2222
Q ss_pred HHhCCCC----cccccccHHHHHHHHHHHHccCCEEEEEecccCcccccccCCCCCCCCCCcEEEEeeccCCccccc--c
Q 046742 131 RKIGLYD----QSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVDLEKLGIPPMNTNGSSKIVFTTRSAGGCGLM--E 204 (769)
Q Consensus 131 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~iivTtR~~~v~~~~--~ 204 (769)
..++... +..+..+ ....+.+...+.+.+..+|+|+..+...+.. .++ +.+-|..||+...+.... +
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhh
Confidence 3332111 0000001 1223445556666666677776544433321 121 244555677765443221 1
Q ss_pred ccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHHHhc------CC--CChhHHHHHH
Q 046742 205 AHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGRAMA------FK--KTPQEWKDAI 276 (769)
Q Consensus 205 ~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~------~~--~~~~~w~~~l 276 (769)
-...+++++++.++..+++.+.+..... .-..+.++.|++.|+|.|-.+..++..+. .. -+.+..+.++
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l 226 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKAL 226 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 2346799999999999999988764331 22257788999999999977655554321 11 2444444555
Q ss_pred HHHHhcccCCCChhh-hhhHHh-hhcCCCCCCccchhHHHHHHhhcCccccchhHhHHHH-HHHHhhcccccCCC
Q 046742 277 QVLRRSASEFPGMDE-IKSCFL-YCCLFPEDCDISKIDLIDCWIGEGFFDEYDRGYTIIG-DLLRACLLEEVNDN 348 (769)
Q Consensus 277 ~~l~~~~~~~~~~~~-~k~cfl-~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~-~L~~~sll~~~~~~ 348 (769)
..+... ..++.. .+..+. ..+.+..+ ++....+. .-+-.+...+...++ .|++.+|+.....+
T Consensus 227 ~~l~~~---~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia-----~~lg~~~~~~~~~~e~~Li~~~li~~~~~g 292 (305)
T TIGR00635 227 EMLMID---ELGLDEIDRKLLSVLIEQFQGG-PVGLKTLA-----AALGEDADTIEDVYEPYLLQIGFLQRTPRG 292 (305)
T ss_pred HHhCCC---CCCCCHHHHHHHHHHHHHhCCC-cccHHHHH-----HHhCCCcchHHHhhhHHHHHcCCcccCCch
Confidence 443222 222222 222222 23434322 33333333 222233336667778 69999999765433
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.14 E-value=2.7e-09 Score=112.21 Aligned_cols=267 Identities=13% Similarity=0.051 Sum_probs=145.7
Q ss_pred CCCCCCchHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHH
Q 046742 55 IPQTLGLESTFDEVWRCLGE-----EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENI 129 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 129 (769)
...|+||++.++.+..++.. ...+.+.|+|++|+|||++|+.+++.. . ..+ .++..+.. .....+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~---~~~~~~~~-~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-G--VNI---RITSGPAL-EKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCe---EEEecccc-cChHHHHHH
Confidence 36789999999999887742 345678899999999999999999997 2 222 12222211 111222333
Q ss_pred HHHhCCCCcccccccH----HHHHHHHHHHHccCCEEEEEecccCcccccccCCCCCCCCCCcEEEEeeccCCcccccc-
Q 046742 130 ARKIGLYDQSWKNKRL----EIKAADIFKILSRKKFVLLLDDIWNRVDLEKLGIPPMNTNGSSKIVFTTRSAGGCGLME- 204 (769)
Q Consensus 130 ~~~l~~~~~~~~~~~~----~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~iivTtR~~~v~~~~~- 204 (769)
+..+....- .--.+. ....+.+...+.+.+..+|+|+..+...+.. .++ +.+-|..|++...+.....
T Consensus 97 l~~l~~~~v-l~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 97 LTNLEEGDV-LFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HHhcccCCE-EEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHHHH
Confidence 333321110 000000 1122334455555566666666543322211 111 2345556776554432211
Q ss_pred -ccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHHHhc------CC--CChhHHHHH
Q 046742 205 -AHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGRAMA------FK--KTPQEWKDA 275 (769)
Q Consensus 205 -~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~------~~--~~~~~w~~~ 275 (769)
-...+++++++.++..+++.+.+...... -..+.++.|++.|+|.|-.+..+...+. .+ -+.+.-+..
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~ 246 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVE---IDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKA 246 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 12468999999999999999887654422 2357889999999999976655554321 11 223333333
Q ss_pred HHHHHhcccCCCChhhhhhHHh-hhcCCCCCCccchhHHHHHHhhcCccccchhHhHHHH-HHHHhhcccccC
Q 046742 276 IQVLRRSASEFPGMDEIKSCFL-YCCLFPEDCDISKIDLIDCWIGEGFFDEYDRGYTIIG-DLLRACLLEEVN 346 (769)
Q Consensus 276 l~~l~~~~~~~~~~~~~k~cfl-~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~-~L~~~sll~~~~ 346 (769)
++.+......++.. .+..+. ....|+.+ ++..+.+. .-+-.+.....+.++ .|++.+|++...
T Consensus 247 l~~~~~~~~~l~~~--~~~~l~~~~~~~~~~-~~~~~~~a-----~~lg~~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 247 LDMLGVDELGLDEM--DRKYLRTIIEKFGGG-PVGLDTLA-----AALGEERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred HHHhCCCcCCCCHH--HHHHHHHHHHHcCCC-ceeHHHHH-----HHHCCCcchHHHHhhHHHHHcCCcccCC
Confidence 43332222222221 333332 44445544 34444432 223333335666777 899999997653
No 31
>PF05729 NACHT: NACHT domain
Probab=99.08 E-value=7.1e-10 Score=104.73 Aligned_cols=141 Identities=13% Similarity=0.176 Sum_probs=89.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCC----CcEEEEEEeCccccHH---HHHHHHHHHhCCCCcccccccHHHHHH
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNG----FDFVIWVVLSRDLQID---RLQENIARKIGLYDQSWKNKRLEIKAA 150 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 150 (769)
+++.|+|.+|+||||+++.++.+... ... +..++|+......... .+...+..+.... ......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE-EEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES-----IAPIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh-cCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc-----hhhhHH---
Confidence 57899999999999999999988732 222 4567777766544332 3444444443321 111111
Q ss_pred HHHHH-HccCCEEEEEecccCcccc---------cccC-CCCCC-CCCCcEEEEeeccCCc---cccccccceEEcCCCC
Q 046742 151 DIFKI-LSRKKFVLLLDDIWNRVDL---------EKLG-IPPMN-TNGSSKIVFTTRSAGG---CGLMEAHRIFKVKCLE 215 (769)
Q Consensus 151 ~l~~~-l~~k~~LlVlDdv~~~~~~---------~~~~-~~~~~-~~~~~~iivTtR~~~v---~~~~~~~~~~~l~~l~ 215 (769)
.+... -+.+++++|+|++++...- ..+. ..+.. ..++++++||+|.... .........+++.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 11122 2468999999999865331 1111 11121 2468999999998765 2233344679999999
Q ss_pred HHHHHHHHHhhh
Q 046742 216 HKEAWELFQMKV 227 (769)
Q Consensus 216 ~~~a~~l~~~~~ 227 (769)
+++..+++.+..
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999997764
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.2e-10 Score=108.05 Aligned_cols=104 Identities=31% Similarity=0.457 Sum_probs=27.3
Q ss_pred cceeEEEEeecccccccccCCC-CCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccc-cCCcCCCEE
Q 046742 390 KWQVIRRMSLMENQVQSLSKIP-SCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGI-SRLVSLQHL 467 (769)
Q Consensus 390 ~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i-~~l~~L~~L 467 (769)
...+++.|++.+|.++.+..+. .+.+|++|++++|.++.++. +..+++|++|++++| .++.++..+ ..+++|+.|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCcCCEE
Confidence 3335566666666666555554 35566666666666665543 555666666666666 444554333 245666666
Q ss_pred eccCCCCcccc--hhhhcCCCCcEEecCCCc
Q 046742 468 NLSLTNIKELP--EELKALVNLKCLNLDYTK 496 (769)
Q Consensus 468 ~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~ 496 (769)
++++|+|..+- ..++.+++|+.|++.+|+
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 66666555332 234455556666655554
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.04 E-value=5.7e-12 Score=125.59 Aligned_cols=120 Identities=23% Similarity=0.364 Sum_probs=99.6
Q ss_pred cccccccccCCCCC-CCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcc-ccccccCCcCCCEEeccC-CCCcc
Q 046742 400 MENQVQSLSKIPSC-PSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQ-LPSGISRLVSLQHLNLSL-TNIKE 476 (769)
Q Consensus 400 ~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-lp~~i~~l~~L~~L~l~~-~~l~~ 476 (769)
.+.+++++|. ++ ..-..+.|..|.|+.+|+..|+.+++||.||||.| .++. -|..|..+..|-.|-+-+ |+|++
T Consensus 54 r~~GL~eVP~--~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 54 RGKGLTEVPA--NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred cCCCcccCcc--cCCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 3445555553 22 34567899999999999999999999999999999 5554 588899999988887766 89999
Q ss_pred cchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccc
Q 046742 477 LPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYF 523 (769)
Q Consensus 477 lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 523 (769)
+|++ +++|..|+.|.+.-|+ +..++..++..|++|..|.+++|.+.
T Consensus 131 l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhh
Confidence 9987 8999999999998886 78888888999999999999987653
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=6.2e-10 Score=103.42 Aligned_cols=141 Identities=26% Similarity=0.361 Sum_probs=55.2
Q ss_pred cccccccccCCCCCCCccEEEccCCCCcccchhhhc-CCCcceEEEecCCCCCccccccccCCcCCCEEeccCCCCcccc
Q 046742 400 MENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQ-FMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNIKELP 478 (769)
Q Consensus 400 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp 478 (769)
..+.+...+.+.++.+++.|+|.+|.++.+.. ++ .+.+|++|++++| .++.++ .+..+.+|+.|++++|.|++++
T Consensus 5 t~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 5 TANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp -------------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-C
T ss_pred cccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccc
Confidence 34556666777888899999999999988864 55 5889999999999 787776 5788999999999999999997
Q ss_pred hhh-hcCCCCcEEecCCCcCcCccCc-ccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEE
Q 046742 479 EEL-KALVNLKCLNLDYTKSLCRIPR-HLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGIN 548 (769)
Q Consensus 479 ~~~-~~l~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 548 (769)
..+ ..+++|++|++++|+ +.++.. ..+..+++|+.|++.+|+..... .....-+..+++|+.|+-.
T Consensus 81 ~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~---~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKK---NYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGST---THHHHHHHH-TT-SEETTE
T ss_pred cchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchh---hHHHHHHHHcChhheeCCE
Confidence 766 479999999999997 554433 33778999999999998875432 2333456677888877654
No 35
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.98 E-value=4.4e-09 Score=106.39 Aligned_cols=174 Identities=21% Similarity=0.248 Sum_probs=110.0
Q ss_pred cCCCCCCCCchHHHH---HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHH
Q 046742 52 ERPIPQTLGLESTFD---EVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQEN 128 (769)
Q Consensus 52 ~~~~~~~vGr~~~~~---~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 128 (769)
|+..+.+||.+.-+. -|.+++..+......+|||+|+||||||+.++... ...|. .++...+
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~-----~~sAv~~------- 84 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFE-----ALSAVTS------- 84 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceE-----Eeccccc-------
Confidence 334456777776653 35667777888888899999999999999999987 34443 2222222
Q ss_pred HHHHhCCCCcccccccHHHHHHHHHH-HHccCCEEEEEecccCc--ccccccCCCCCCCCCCcEEEE--eeccCCc---c
Q 046742 129 IARKIGLYDQSWKNKRLEIKAADIFK-ILSRKKFVLLLDDIWNR--VDLEKLGIPPMNTNGSSKIVF--TTRSAGG---C 200 (769)
Q Consensus 129 i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~iiv--TtR~~~v---~ 200 (769)
..+++.+..+.-++ ...+++.+|++|+|+.- .+-+.+ +|..-+|.-|+| ||-++.. .
T Consensus 85 ------------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ 149 (436)
T COG2256 85 ------------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNP 149 (436)
T ss_pred ------------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecH
Confidence 22233333333322 33488999999999753 333333 444556766666 6666543 1
Q ss_pred ccccccceEEcCCCCHHHHHHHHHhhhCCCccC---CCC-CHHHHHHHHHHHcCCchhH
Q 046742 201 GLMEAHRIFKVKCLEHKEAWELFQMKVGRETLE---SHL-QIPELAEIVAKECDGLPLA 255 (769)
Q Consensus 201 ~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~---~~~-~~~~~~~~i~~~~~g~Pla 255 (769)
.......++++++|+.++..+++.+.+-..... ... -.++..+.+++.++|--.+
T Consensus 150 ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 150 ALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred HHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 122455789999999999999999954322111 111 1245777888888876543
No 36
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.98 E-value=2.8e-08 Score=110.39 Aligned_cols=205 Identities=15% Similarity=0.044 Sum_probs=125.1
Q ss_pred CCCCCchHHHHHHHHHhcc----CC-ccEEEEEcCCCCcHHHHHHHHHhhccCC--CCCC--cEEEEEEeCccccHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGE----EH-VGIIGLYGMGEVGKTTLLTRINNKFSNT--PNGF--DFVIWVVLSRDLQIDRLQ 126 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~----~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~--~~~f--~~~~wv~~~~~~~~~~~~ 126 (769)
+.+.|||+|+++|...|.. .+ ..++.|+|++|+|||+.++.|...+... .... -.+++|++..-.+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 5678999999999988853 22 3567899999999999999998876211 1111 236788888777889999
Q ss_pred HHHHHHhCCCCcccccccHHHHHHHHHHHHcc---CCEEEEEecccCccc-----ccccCCCCCCCCCCcEEEE--eecc
Q 046742 127 ENIARKIGLYDQSWKNKRLEIKAADIFKILSR---KKFVLLLDDIWNRVD-----LEKLGIPPMNTNGSSKIVF--TTRS 196 (769)
Q Consensus 127 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~---k~~LlVlDdv~~~~~-----~~~~~~~~~~~~~~~~iiv--TtR~ 196 (769)
..|++++....+. ......+....+.+.+.. ...+||||+|+.... +-.+... + ...+++|+| +|..
T Consensus 835 qvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~-~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 835 QVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-P-TKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-h-hccCCeEEEEEecCc
Confidence 9999988533221 233344555666655522 245999999975421 1111111 1 123444444 3433
Q ss_pred CCcccc----cc---ccceEEcCCCCHHHHHHHHHhhhCCCc-cCCCCCHHHHHHHHHHHcCCchhHHHHHHHHh
Q 046742 197 AGGCGL----ME---AHRIFKVKCLEHKEAWELFQMKVGRET-LESHLQIPELAEIVAKECDGLPLALITIGRAM 263 (769)
Q Consensus 197 ~~v~~~----~~---~~~~~~l~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 263 (769)
.++... +. ....+..+|++.++..+++..++.... .-.+..++-+|+.++...|-.-.||.++-.+.
T Consensus 912 lDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 222111 11 123467799999999999999886422 11122233344445555566777777765444
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.88 E-value=1.3e-09 Score=115.06 Aligned_cols=42 Identities=24% Similarity=0.180 Sum_probs=17.3
Q ss_pred hcCCCcceEEEecCCCCCccccccccCCcC---CCEEeccCCCCc
Q 046742 434 FQFMPSLKVLNLSNNQSLKQLPSGISRLVS---LQHLNLSLTNIK 475 (769)
Q Consensus 434 ~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~---L~~L~l~~~~l~ 475 (769)
+..+++|+.|++++|......+..+..+.+ |++|++++|.+.
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 334445555555544222223333332322 555555544443
No 38
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.83 E-value=4e-08 Score=106.61 Aligned_cols=178 Identities=16% Similarity=0.165 Sum_probs=108.0
Q ss_pred CCCCCCCCchHHHHH---HHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHH
Q 046742 53 RPIPQTLGLESTFDE---VWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENI 129 (769)
Q Consensus 53 ~~~~~~vGr~~~~~~---l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 129 (769)
+..+.+||++..+.. +.+++.....+.+.++|++|+||||+|+.+++.. ...| +.++....-...++++
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~i 80 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREV 80 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHH
Confidence 334678999998777 8888887777889999999999999999999986 2333 2222211111111122
Q ss_pred HHHhCCCCcccccccHHHHHHHHHHH-HccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEE--eeccCC--cc-c
Q 046742 130 ARKIGLYDQSWKNKRLEIKAADIFKI-LSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVF--TTRSAG--GC-G 201 (769)
Q Consensus 130 ~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iiv--TtR~~~--v~-~ 201 (769)
. +...+. ..+++.+|++|+++... ..+.+...+. .+..+++ ||.+.. +. .
T Consensus 81 i-------------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 81 I-------------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPA 138 (413)
T ss_pred H-------------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHH
Confidence 1 111111 13578899999998642 2222222221 2344444 334332 11 1
Q ss_pred cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHH
Q 046742 202 LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIG 260 (769)
Q Consensus 202 ~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 260 (769)
.......+++.+++.++..+++.+.+.........-..+..+.+++.++|.+..+..+.
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 11233678999999999999999876432111112235778889999999997664443
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=98.82 E-value=2.3e-08 Score=99.07 Aligned_cols=152 Identities=15% Similarity=0.172 Sum_probs=91.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKI 155 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 155 (769)
..+.+.|+|++|+|||+|++.+++... .....+.|+.+.... .... .+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~~---~~~~-----------------------~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKSQ---YFSP-----------------------AVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHhh---hhhH-----------------------HHHhh
Confidence 446789999999999999999999872 122345676553110 0000 11112
Q ss_pred HccCCEEEEEecccCc---ccccc-cCCCCCC-CCCCcEEEE-eecc---------CCccccccccceEEcCCCCHHHHH
Q 046742 156 LSRKKFVLLLDDIWNR---VDLEK-LGIPPMN-TNGSSKIVF-TTRS---------AGGCGLMEAHRIFKVKCLEHKEAW 220 (769)
Q Consensus 156 l~~k~~LlVlDdv~~~---~~~~~-~~~~~~~-~~~~~~iiv-TtR~---------~~v~~~~~~~~~~~l~~l~~~~a~ 220 (769)
+. +.-+||+||++.. .+|+. +...+.. ...|..+|| |++. +++...+.....+++++++.++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 22 2348999999864 22331 1111111 123445554 4443 233444444568899999999999
Q ss_pred HHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHH
Q 046742 221 ELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIG 260 (769)
Q Consensus 221 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 260 (769)
+++++.+...... -.++..+.|++.+.|..-.+..+-
T Consensus 168 ~iL~~~a~~~~l~---l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 168 IVLQRNAYQRGIE---LSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHHHHcCCC---CCHHHHHHHHHhccCCHHHHHHHH
Confidence 9999888644322 236788889999887765554443
No 40
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.81 E-value=3.7e-08 Score=98.22 Aligned_cols=173 Identities=16% Similarity=0.129 Sum_probs=105.4
Q ss_pred CCCC--CchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHh
Q 046742 56 PQTL--GLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKI 133 (769)
Q Consensus 56 ~~~v--Gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 133 (769)
+.|+ +.+..++.+.+++.....+.|.|+|+.|+|||++|+.+++... ......+++++..-.. ..
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~------~~---- 81 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ------AD---- 81 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH------hH----
Confidence 4555 3566788888887666677899999999999999999998872 2223455665433211 00
Q ss_pred CCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc----ccccCCCCCC-CCCCcEEEEeeccCCc---------
Q 046742 134 GLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD----LEKLGIPPMN-TNGSSKIVFTTRSAGG--------- 199 (769)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~~~~~~-~~~~~~iivTtR~~~v--------- 199 (769)
..+.+.+++ .-+||+||++.... .+.+...+.. ...+..+|+|++....
T Consensus 82 ----------------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L 144 (226)
T TIGR03420 82 ----------------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDL 144 (226)
T ss_pred ----------------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHH
Confidence 011111222 23899999975431 1222211111 1223478888875321
Q ss_pred cccccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHH
Q 046742 200 CGLMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGR 261 (769)
Q Consensus 200 ~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 261 (769)
.........+++++++.++...++...+..... .-..+..+.+++.+.|.|..+..+..
T Consensus 145 ~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 145 RTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL---QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 111122357899999999999999876532221 12256778888889999987766643
No 41
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.81 E-value=5.1e-08 Score=96.68 Aligned_cols=174 Identities=16% Similarity=0.167 Sum_probs=114.1
Q ss_pred CCCCCchHHHHH---HHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHH
Q 046742 56 PQTLGLESTFDE---VWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARK 132 (769)
Q Consensus 56 ~~~vGr~~~~~~---l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 132 (769)
..+||.+..+.+ |.+++.+++.+.+.+||++|+||||||+.++..- +.+- ..||..+....-..-.+.|.++
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHH
Confidence 455777665443 5666677889999999999999999999999986 2222 6788877765555555555544
Q ss_pred hCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCc--ccccccCCCCCCCCCCcEEEE--eeccCCc---cccccc
Q 046742 133 IGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNR--VDLEKLGIPPMNTNGSSKIVF--TTRSAGG---CGLMEA 205 (769)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~iiv--TtR~~~v---~~~~~~ 205 (769)
-.. ...+.++|.+|.+|+|..- .+-+.+ +|...+|.-++| ||-++.. ......
T Consensus 213 aq~-----------------~~~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSR 272 (554)
T KOG2028|consen 213 AQN-----------------EKSLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSR 272 (554)
T ss_pred HHH-----------------HHhhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhc
Confidence 321 1234578999999999743 333333 556666776666 6777654 122344
Q ss_pred cceEEcCCCCHHHHHHHHHhhhC---CCcc---C-CCC---CHHHHHHHHHHHcCCchh
Q 046742 206 HRIFKVKCLEHKEAWELFQMKVG---RETL---E-SHL---QIPELAEIVAKECDGLPL 254 (769)
Q Consensus 206 ~~~~~l~~l~~~~a~~l~~~~~~---~~~~---~-~~~---~~~~~~~~i~~~~~g~Pl 254 (769)
..++.|++|..++...++.+... .... . .++ -...+.+.++..|.|-..
T Consensus 273 C~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 273 CRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred cceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 57899999999999999988442 2111 1 111 123566778888887654
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.75 E-value=1.7e-09 Score=104.20 Aligned_cols=135 Identities=24% Similarity=0.411 Sum_probs=108.3
Q ss_pred CCcceeEEEEeecccccccccC-CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCE
Q 046742 388 TGKWQVIRRMSLMENQVQSLSK-IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQH 466 (769)
Q Consensus 388 ~~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 466 (769)
...|+.|+.++++.|.++.+.. ..-.+.+|.|++++|.+..+.. +..+++|+.||||+| .+.++...-.+|-+.+.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEee
Confidence 4567789999999999888765 3456889999999999888865 788999999999999 66666655567788889
Q ss_pred EeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCc-ccccCCcccceeeeeccccccccc
Q 046742 467 LNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPR-HLISNFSMLYILRIVDCHYFEEVE 527 (769)
Q Consensus 467 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~ 527 (769)
|.|++|.|..+ +++++|.+|..||+++|+ +..+.. .-|++|+.|+++.+.+|++...+.
T Consensus 357 L~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 357 LKLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred eehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 99999998887 578999999999999986 454432 228899999999999888755543
No 43
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.74 E-value=2e-07 Score=108.98 Aligned_cols=294 Identities=13% Similarity=0.151 Sum_probs=162.1
Q ss_pred CCCCchHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc---cHHHHHHHHH
Q 046742 57 QTLGLESTFDEVWRCLGE---EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL---QIDRLQENIA 130 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~---~~~~~~~~i~ 130 (769)
.++||+.+++.|...+.+ ....++.|.|.+|||||+++.+|.....+.++.|-...+-...... ...+.+++++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 368999999999998854 4566999999999999999999999984333333322222222222 2334444444
Q ss_pred HHhC-------------------CCCc-------------c-------cccccHHHHHH-----HHHHHH-ccCCEEEEE
Q 046742 131 RKIG-------------------LYDQ-------------S-------WKNKRLEIKAA-----DIFKIL-SRKKFVLLL 165 (769)
Q Consensus 131 ~~l~-------------------~~~~-------------~-------~~~~~~~~~~~-----~l~~~l-~~k~~LlVl 165 (769)
.++. ..+. . ......+.+.. .+.... +.++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 4441 1000 0 00011111111 111222 346999999
Q ss_pred ecccCc--ccc---cccCCCCCC-CCCCcEEEE--eeccC--CccccccccceEEcCCCCHHHHHHHHHhhhCCCccCCC
Q 046742 166 DDIWNR--VDL---EKLGIPPMN-TNGSSKIVF--TTRSA--GGCGLMEAHRIFKVKCLEHKEAWELFQMKVGRETLESH 235 (769)
Q Consensus 166 Ddv~~~--~~~---~~~~~~~~~-~~~~~~iiv--TtR~~--~v~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~ 235 (769)
||+.-. ..+ +.+...... .-....|.. |.+.. ++-........+.|.||+..+...+.....+...
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~---- 236 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK---- 236 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----
Confidence 999421 111 111111100 000111222 22221 1112223457899999999999999999887643
Q ss_pred CCHHHHHHHHHHHcCCchhHHHHHHHHhcCC------CChhHHHHHH-------------HHHHhcccCCCChhhhhhHH
Q 046742 236 LQIPELAEIVAKECDGLPLALITIGRAMAFK------KTPQEWKDAI-------------QVLRRSASEFPGMDEIKSCF 296 (769)
Q Consensus 236 ~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~------~~~~~w~~~l-------------~~l~~~~~~~~~~~~~k~cf 296 (769)
....+..+.|.++..|+|+-+..+-..+... .+...|..-. +.+......+++. .+.-.
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~--t~~Vl 314 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGT--TREVL 314 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHH--HHHHH
Confidence 3346889999999999999999998887653 3334443221 2222223333322 56666
Q ss_pred hhhcCCCCCCccchhHHHHHHhhcCccccchhHhHHHHHHHHhhccccc-------CCC---ceEEhHHHHHHHHH
Q 046742 297 LYCCLFPEDCDISKIDLIDCWIGEGFFDEYDRGYTIIGDLLRACLLEEV-------NDN---NVKLHDVIRDMGLW 362 (769)
Q Consensus 297 l~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~L~~~sll~~~-------~~~---~~~mhdl~~~~~~~ 362 (769)
-..|++...++. ..+...+-. ....++...++.|.+..++-.. ... +-..|+++++.+..
T Consensus 315 ~~AA~iG~~F~l--~~La~l~~~----~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~ 384 (849)
T COG3899 315 KAAACIGNRFDL--DTLAALAED----SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYN 384 (849)
T ss_pred HHHHHhCccCCH--HHHHHHHhh----chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhc
Confidence 667777666653 334333321 1112455556666665555321 112 33788888887753
No 44
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.70 E-value=3.5e-07 Score=86.79 Aligned_cols=178 Identities=19% Similarity=0.187 Sum_probs=96.4
Q ss_pred cCCCCCCCCchHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHH
Q 046742 52 ERPIPQTLGLESTFDEVWRCLG-----EEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQ 126 (769)
Q Consensus 52 ~~~~~~~vGr~~~~~~l~~~L~-----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 126 (769)
|..-.+|||.++.++.+.-++. .+....+.+|||+|+||||||.-+++.. ...|. +.+...-....++
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~~dl- 92 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKAGDL- 92 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SCHHH-
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhHHHH-
Confidence 3445789999999998766553 2456678899999999999999999998 34442 3332111111111
Q ss_pred HHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc---------cccccCCC-CCCCC-----------
Q 046742 127 ENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV---------DLEKLGIP-PMNTN----------- 185 (769)
Q Consensus 127 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~~~~~-~~~~~----------- 185 (769)
..++.. + +++-+|.+|+++... .++..... ....+
T Consensus 93 ~~il~~-----------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 93 AAILTN-----------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp HHHHHT--------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred HHHHHh-----------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 111111 1 234467778776421 01111000 00111
Q ss_pred CCcEEEEeeccCCccccccc-cc-eEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHHHh
Q 046742 186 GSSKIVFTTRSAGGCGLMEA-HR-IFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGRAM 263 (769)
Q Consensus 186 ~~~~iivTtR~~~v~~~~~~-~~-~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 263 (769)
+-+-|=.|||..-+..-+.. .. ..+++..+.+|-.+++.+.+..-+.. -.++.+.+|++.+.|-|--..-+-+.+
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~---i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE---IDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E---E-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 12344468887665433332 23 34899999999999999877544322 236889999999999997666555444
No 45
>PTZ00202 tuzin; Provisional
Probab=98.69 E-value=1.4e-06 Score=90.23 Aligned_cols=166 Identities=14% Similarity=0.124 Sum_probs=103.0
Q ss_pred cCCCCCCCCchHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHH
Q 046742 52 ERPIPQTLGLESTFDEVWRCLGE---EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQEN 128 (769)
Q Consensus 52 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 128 (769)
|...+.|+||++++..+...|.+ +..++++|+|++|+|||||++.+.... . ...++++.. +.+++++.
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~-----~~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G-----MPAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C-----ceEEEECCC---CHHHHHHH
Confidence 44568899999999999999964 234588999999999999999999876 2 113333333 67999999
Q ss_pred HHHHhCCCCcccccccHHHHHHHHHHHH-c-cCCEEEEEecccCccccccc---CCCCCCCCCCcEEEEeeccCCcc--c
Q 046742 129 IARKIGLYDQSWKNKRLEIKAADIFKIL-S-RKKFVLLLDDIWNRVDLEKL---GIPPMNTNGSSKIVFTTRSAGGC--G 201 (769)
Q Consensus 129 i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~~~~~~---~~~~~~~~~~~~iivTtR~~~v~--~ 201 (769)
++++|+.+.......-.+.+.+.+.+.- . +++.+||+-==+. .++... ...+..+..-|.|++----+.+- .
T Consensus 329 LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg-~~l~rvyne~v~la~drr~ch~v~evpleslt~~~ 407 (550)
T PTZ00202 329 VVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREG-SSLQRVYNEVVALACDRRLCHVVIEVPLESLTIAN 407 (550)
T ss_pred HHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCC-CcHHHHHHHHHHHHccchhheeeeeehHhhcchhc
Confidence 9999998532211122233444443332 2 5667777653211 111111 11122333446677643333221 1
Q ss_pred -cccccceEEcCCCCHHHHHHHHHhhh
Q 046742 202 -LMEAHRIFKVKCLEHKEAWELFQMKV 227 (769)
Q Consensus 202 -~~~~~~~~~l~~l~~~~a~~l~~~~~ 227 (769)
....-..|-+++|+.++|.++.++..
T Consensus 408 ~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 408 TLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred ccCccceeEecCCCCHHHHHHHHhhcc
Confidence 11233678999999999999987764
No 46
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.69 E-value=2.4e-07 Score=98.53 Aligned_cols=196 Identities=11% Similarity=0.087 Sum_probs=109.4
Q ss_pred CCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCc-EEEEEEeCccccH-HHHHH---HHH
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFD-FVIWVVLSRDLQI-DRLQE---NIA 130 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~-~~~~~---~i~ 130 (769)
+.++|++..++.+.+++..+..+.+.++|+.|+||||+|+.+++... ...+. ..+.++++...+. ...+. ...
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFDQGKKYLVEDPRFA 92 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhhcchhhhhcCcchh
Confidence 67899999999999999877767788999999999999999999872 12222 2344443321100 00000 000
Q ss_pred HHhCCCCcccccccHHHHHHHHHHHH-----ccCCEEEEEecccCccc--ccccCCCCCCCCCCcEEEEeeccCC-cccc
Q 046742 131 RKIGLYDQSWKNKRLEIKAADIFKIL-----SRKKFVLLLDDIWNRVD--LEKLGIPPMNTNGSSKIVFTTRSAG-GCGL 202 (769)
Q Consensus 131 ~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~iivTtR~~~-v~~~ 202 (769)
..++.. ........+.....+.... .+.+-+||+||++.... ...+...+......+++|+|+.+.. +...
T Consensus 93 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 93 HFLGTD-KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hhhhhh-hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchh
Confidence 000000 0000001111111111111 13445899999975421 2222211222234567777765432 2111
Q ss_pred c-cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHH
Q 046742 203 M-EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALI 257 (769)
Q Consensus 203 ~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 257 (769)
. .....+++.+++.++..+++.+.+...... -..+.++.+++.++|.+-.+.
T Consensus 172 L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 172 IRSRCLPLFFRAPTDDELVDVLESIAEAEGVD---YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hcCCceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 1 223578999999999999998876544322 226788889999988765543
No 47
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.68 E-value=1.7e-08 Score=106.66 Aligned_cols=158 Identities=23% Similarity=0.246 Sum_probs=105.7
Q ss_pred eEEEEeeccccccc-------c-cCCCCCCCccEEEccCCCCcccchhhhcCCCc---ceEEEecCCCCCc----ccccc
Q 046742 393 VIRRMSLMENQVQS-------L-SKIPSCPSLITLFLNNNNLKVITDGFFQFMPS---LKVLNLSNNQSLK----QLPSG 457 (769)
Q Consensus 393 ~l~~L~l~~~~~~~-------~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~L~~~~~~~----~lp~~ 457 (769)
+++++++.++.+.. + ..+..+++|+.|++++|.+....+..+..+.. |++|++++|.... .+...
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 46777777665542 1 12456889999999999886544444544444 9999999984331 23345
Q ss_pred ccCC-cCCCEEeccCCCCc-----ccchhhhcCCCCcEEecCCCcCcC----ccCcccccCCcccceeeeeccccccccc
Q 046742 458 ISRL-VSLQHLNLSLTNIK-----ELPEELKALVNLKCLNLDYTKSLC----RIPRHLISNFSMLYILRIVDCHYFEEVE 527 (769)
Q Consensus 458 i~~l-~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~l~----~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 527 (769)
+..+ ++|+.|++++|.++ .++..+..+++|++|++++|.... .++.. +..+++|++|++++|.+....
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~- 209 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG-LKANCNLEVLDLNNNGLTDEG- 209 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH-HHhCCCCCEEeccCCccChHH-
Confidence 6667 89999999999877 355567778899999999987432 22322 455679999999988754321
Q ss_pred hhhhHHHHhhcCcCCcEEEEEeccch
Q 046742 528 NCEVLMEEVLLMENLNVLGINLTSSH 553 (769)
Q Consensus 528 ~~~~~~~~l~~l~~L~~L~l~~~~~~ 553 (769)
.......+..+++|+.|+++.+...
T Consensus 210 -~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 210 -ASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred -HHHHHHHhcccCCCCEEecCCCcCc
Confidence 1223344566788888888765543
No 48
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.68 E-value=3.4e-07 Score=101.70 Aligned_cols=193 Identities=16% Similarity=0.158 Sum_probs=112.0
Q ss_pred CCCCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHH--
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARK-- 132 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-- 132 (769)
..+||.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++.+ .-....+. .....-...+.|...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL-nCe~~~~~-------~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL-NCETGVTS-------QPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCccCCCC-------CCCcccHHHHHHhcCCC
Confidence 56799999999999999876644 55799999999999999999876 21111100 000000111111100
Q ss_pred ---hCCCCcccccccHHHHHHHHHHH----HccCCEEEEEecccCccc--ccccCCCCCCCCCCcEEEEeeccCC-ccc-
Q 046742 133 ---IGLYDQSWKNKRLEIKAADIFKI----LSRKKFVLLLDDIWNRVD--LEKLGIPPMNTNGSSKIVFTTRSAG-GCG- 201 (769)
Q Consensus 133 ---l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~iivTtR~~~-v~~- 201 (769)
+.+.. ......+++.+.+... ..++.-++|||+++.... +..+...+.....+.++|+||++.. +..
T Consensus 88 ~DviEIDA--as~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~T 165 (830)
T PRK07003 88 VDYVEMDA--ASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVT 165 (830)
T ss_pred ceEEEecc--cccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccch
Confidence 00000 0011122222222111 124556899999986532 3333222323334677787777643 221
Q ss_pred cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch-hHHHHHHH
Q 046742 202 LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP-LALITIGR 261 (769)
Q Consensus 202 ~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~ 261 (769)
.......|++.+++.++..+.+.+.+..+... -..+..+.|++.++|.. -++..+-.
T Consensus 166 IrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~---id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 166 VLSRCLQFNLKQMPAGHIVSHLERILGEERIA---FEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred hhhheEEEecCCcCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 12334679999999999999999987654422 22677889999998865 46555433
No 49
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.4e-06 Score=91.57 Aligned_cols=197 Identities=15% Similarity=0.156 Sum_probs=127.3
Q ss_pred CCCCCchHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGE----EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIAR 131 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 131 (769)
..+.+|+++++++...|.. ..+.-+.|+|..|+|||+.++.++..........+ .+.|++....+..+++..|++
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 3478999999999988843 34445899999999999999999999832222222 789999999999999999999
Q ss_pred HhCCCCcccccccHHHHHHHHHHHHc--cCCEEEEEecccCccccc-----ccCCCCCCCCCCcEEEE--eeccCC----
Q 046742 132 KIGLYDQSWKNKRLEIKAADIFKILS--RKKFVLLLDDIWNRVDLE-----KLGIPPMNTNGSSKIVF--TTRSAG---- 198 (769)
Q Consensus 132 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~-----~~~~~~~~~~~~~~iiv--TtR~~~---- 198 (769)
+++... .......+....+.+.+. ++.+++|||+++....-. .+.. .+... +++|++ .+-+..
T Consensus 96 ~~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r-~~~~~-~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 96 KLGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLR-APGEN-KVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HcCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHh-hcccc-ceeEEEEEEeccHHHHHH
Confidence 996222 145566677777777775 478999999997643221 2211 11111 444443 333222
Q ss_pred ----ccccccccceEEcCCCCHHHHHHHHHhhhCC---CccCCCCCHHHHHHHH-HHHcCCchhHHHHH
Q 046742 199 ----GCGLMEAHRIFKVKCLEHKEAWELFQMKVGR---ETLESHLQIPELAEIV-AKECDGLPLALITI 259 (769)
Q Consensus 199 ----v~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~---~~~~~~~~~~~~~~~i-~~~~~g~Plai~~~ 259 (769)
+...++. ..+..+|-+.+|-.+++..++.. .. ......-+++..+ ++..|-.-.|+..+
T Consensus 172 ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~-~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 172 LDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAG-VIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCC-CcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 1222222 23789999999999999988742 22 2223333444444 44444455555554
No 50
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=3.9e-07 Score=103.28 Aligned_cols=179 Identities=16% Similarity=0.128 Sum_probs=109.6
Q ss_pred CCCCCchHHHHHHHHHhccCCccEE-EEEcCCCCcHHHHHHHHHhhccCCCCC-------------------CcEEEEEE
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGII-GLYGMGEVGKTTLLTRINNKFSNTPNG-------------------FDFVIWVV 115 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~vv-~I~G~gGiGKTtLa~~~~~~~~~~~~~-------------------f~~~~wv~ 115 (769)
..+||.+..++.|.+++..++.... .++|+.|+||||+|+.+++.+- -... |.-+++++
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln-ce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN-CEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc-CccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 6679999999999999988776654 7999999999999999999872 1111 11112221
Q ss_pred eCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHH-HHccCCEEEEEecccCc--ccccccCCCCCCCCCCcEEEE
Q 046742 116 LSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFK-ILSRKKFVLLLDDIWNR--VDLEKLGIPPMNTNGSSKIVF 192 (769)
Q Consensus 116 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~iiv 192 (769)
......+ .+..++.+.+.. ...+++-++|||+++.. ..++.+...+-....+.++|+
T Consensus 95 Aas~~kV--------------------DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 95 AASRTKV--------------------DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred cccccCH--------------------HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 1110111 111222222211 12467779999999764 233333222222233556666
Q ss_pred eecc-CCcccc-ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHH
Q 046742 193 TTRS-AGGCGL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALIT 258 (769)
Q Consensus 193 TtR~-~~v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 258 (769)
+|.+ ..+... ......|++.+++.++..+.+.+.+..... .-..+.++.|++.++|.|..+..
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI---~~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL---PFEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 5554 333221 223468999999999999999887754321 12257788999999998864433
No 51
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=5.5e-07 Score=95.87 Aligned_cols=179 Identities=15% Similarity=0.129 Sum_probs=106.4
Q ss_pred CCCCCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHhhccCCCCCC-------------------cEEEEE
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHV-GIIGLYGMGEVGKTTLLTRINNKFSNTPNGF-------------------DFVIWV 114 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f-------------------~~~~wv 114 (769)
...++|.+..++.+.+.+..++. +.+.++|+.|+||||+|+.+++.. .-.... ....++
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l-~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~ 93 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL-NCQNGITSNPCRKCIICKEIEKGLCLDLIEI 93 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHhcCCCCceEEe
Confidence 36779999999999999987654 456899999999999999999886 211100 011122
Q ss_pred EeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEE
Q 046742 115 VLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVF 192 (769)
Q Consensus 115 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iiv 192 (769)
+.+..... +.++++.+.+... ...+++-++|+|+++... .++.+...+.....+.++|+
T Consensus 94 ~~~~~~~v-~~ir~i~~~~~~~------------------p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl 154 (363)
T PRK14961 94 DAASRTKV-EEMREILDNIYYS------------------PSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFIL 154 (363)
T ss_pred cccccCCH-HHHHHHHHHHhcC------------------cccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 11110111 1111222111100 012455699999998653 23333222333334566777
Q ss_pred eeccC-Ccccc-ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHH
Q 046742 193 TTRSA-GGCGL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLAL 256 (769)
Q Consensus 193 TtR~~-~v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 256 (769)
+|.+. .+... .+....+++.+++.++..+.+.+.+..... .-..+.++.|++.++|.|..+
T Consensus 155 ~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 155 ATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred EcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 66543 23221 122467899999999999998887644331 122567888999999988543
No 52
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.65 E-value=9.5e-10 Score=115.00 Aligned_cols=125 Identities=26% Similarity=0.381 Sum_probs=69.3
Q ss_pred EEEEeecccccccccC-CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCC
Q 046742 394 IRRMSLMENQVQSLSK-IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLT 472 (769)
Q Consensus 394 l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 472 (769)
....+++.|.+..+|. ...|..|..+.+..|.+..+|.. +..+..|.+|||+.| .+..+|..++.|+ |+.|-+++|
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecC
Confidence 3444555555555543 34455555555555555555554 455555666666655 4555555555554 555555666
Q ss_pred CCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccc
Q 046742 473 NIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYF 523 (769)
Q Consensus 473 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 523 (769)
+++.+|..++.+..|..|+.+.|. +.++|.. ++++.+|+.|.+..|++.
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~ 202 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE 202 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh
Confidence 666666555555555566555554 4555554 555555555555555443
No 53
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.63 E-value=2.2e-07 Score=85.58 Aligned_cols=123 Identities=19% Similarity=0.088 Sum_probs=74.1
Q ss_pred CCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCc
Q 046742 59 LGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQ 138 (769)
Q Consensus 59 vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 138 (769)
+||+..+.++...+..+..+.+.|+|++|+|||++|+.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 48899999999999876678899999999999999999999872 222346666654433222111111000
Q ss_pred ccccccHHHHHHHHHHHHccCCEEEEEecccCc-----ccccccCCCCCC---CCCCcEEEEeeccCC
Q 046742 139 SWKNKRLEIKAADIFKILSRKKFVLLLDDIWNR-----VDLEKLGIPPMN---TNGSSKIVFTTRSAG 198 (769)
Q Consensus 139 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~~~~~~~~---~~~~~~iivTtR~~~ 198 (769)
............++.++|+||++.. ..+......... ...+..||+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111222356789999999853 122222111111 135678888888654
No 54
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.61 E-value=9.8e-07 Score=93.13 Aligned_cols=179 Identities=13% Similarity=0.124 Sum_probs=106.8
Q ss_pred CCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEe--CccccHHHHHHHHHHH
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVL--SRDLQIDRLQENIARK 132 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~ 132 (769)
-..++|+++.++.+..++.....+.+.|+|+.|+||||+|+.+++... ...+. ..++.+ +....... ..+.+..
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~-~~~i~~~~~~~~~~~~-~~~~i~~ 91 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWR-ENFLELNASDERGIDV-IRNKIKE 91 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCccc-cceEEeccccccchHH-HHHHHHH
Confidence 366899999999999999877777789999999999999999999862 12221 112222 22111111 1111111
Q ss_pred hCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc--ccccCCCCCCCCCCcEEEEeeccC-Ccccc-ccccce
Q 046742 133 IGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD--LEKLGIPPMNTNGSSKIVFTTRSA-GGCGL-MEAHRI 208 (769)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~iivTtR~~-~v~~~-~~~~~~ 208 (769)
+....+ .....+-++|+|+++.... ...+...+......+++|+++... .+... ......
T Consensus 92 ~~~~~~----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 92 FARTAP----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HHhcCC----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 110000 0012356899999875421 222222222223346677766432 22111 123457
Q ss_pred EEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHH
Q 046742 209 FKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLAL 256 (769)
Q Consensus 209 ~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 256 (769)
+++.+++.++....+.+.+...... -..+.++.+++.++|.+.-+
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~~---i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGIE---ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 8999999999999998877544321 22677889999999987653
No 55
>PLN03025 replication factor C subunit; Provisional
Probab=98.61 E-value=3.8e-07 Score=95.55 Aligned_cols=181 Identities=15% Similarity=0.140 Sum_probs=107.4
Q ss_pred CCCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCc-EEEEEEeCccccHHHHHHHHHHH
Q 046742 54 PIPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFD-FVIWVVLSRDLQIDRLQENIARK 132 (769)
Q Consensus 54 ~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~ 132 (769)
....++|.++.++.|..++..+..+.+.++|++|+||||+|+.+++... ...|. .++-++.+...+.. .++++++.
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~-~vr~~i~~ 87 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGID-VVRNKIKM 87 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHH-HHHHHHHH
Confidence 3356799999999999988877777788999999999999999999862 12222 12222222222222 22222222
Q ss_pred hCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc--ccccCCCCCCCCCCcEEEEeeccC-Cccccc-cccce
Q 046742 133 IGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD--LEKLGIPPMNTNGSSKIVFTTRSA-GGCGLM-EAHRI 208 (769)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~iivTtR~~-~v~~~~-~~~~~ 208 (769)
+..... ..-.++.-++|+|+++.... ...+...+......+++++++... .+.... .....
T Consensus 88 ~~~~~~---------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 88 FAQKKV---------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHhccc---------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 110000 00013466999999986521 222211121223456677766543 221111 22357
Q ss_pred EEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhH
Q 046742 209 FKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLA 255 (769)
Q Consensus 209 ~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 255 (769)
+++.+++.++..+.+.+.+......- ..+..+.|++.++|-.-.
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi~i---~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKVPY---VPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHH
Confidence 89999999999999988875544222 256788899999887643
No 56
>PF13173 AAA_14: AAA domain
Probab=98.61 E-value=9.6e-08 Score=85.40 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=80.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKIL 156 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 156 (769)
.+++.|.|+-|+||||++++++.+. . ....+++++........... .+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~~~~~~------------------~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRDRRLAD------------------PD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHHHHHhh------------------hh-hHHHHHHhh
Confidence 3689999999999999999999987 2 33456777665543211000 00 223333333
Q ss_pred ccCCEEEEEecccCcccccccCCCCCCCCCCcEEEEeeccCCcccc------ccccceEEcCCCCHHHH
Q 046742 157 SRKKFVLLLDDIWNRVDLEKLGIPPMNTNGSSKIVFTTRSAGGCGL------MEAHRIFKVKCLEHKEA 219 (769)
Q Consensus 157 ~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~iivTtR~~~v~~~------~~~~~~~~l~~l~~~~a 219 (769)
..++.+++||+|....+|......+.+..++.+|++|+.+...... .+....++|.||+..|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 3477899999998887777665555555567899999887654321 22345789999998774
No 57
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=8.8e-09 Score=104.71 Aligned_cols=156 Identities=21% Similarity=0.192 Sum_probs=105.5
Q ss_pred ceeEEEEeeccccccccc---CCCCCCCccEEEccCCCCcccc--hhhhcCCCcceEEEecCCCCCcccccc--ccCCcC
Q 046742 391 WQVIRRMSLMENQVQSLS---KIPSCPSLITLFLNNNNLKVIT--DGFFQFMPSLKVLNLSNNQSLKQLPSG--ISRLVS 463 (769)
Q Consensus 391 ~~~l~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~lp~~--i~~l~~ 463 (769)
+++|+.+++.+..+...+ ....|++++.|+|++|-+..+. ..+...+++|+.|+|+.|. +...-.+ -..+.+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhh
Confidence 346777888777766554 4678999999999999665433 2346789999999999984 3222211 235788
Q ss_pred CCEEeccCCCCc--ccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcC
Q 046742 464 LQHLNLSLTNIK--ELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMEN 541 (769)
Q Consensus 464 L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 541 (769)
|+.|.++.|.++ ++-.....+++|..|++..|..+..-... ..-+..|++|++++|++..... ...+..++.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~-----~~~~~~l~~ 272 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQ-----GYKVGTLPG 272 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccccc-----ccccccccc
Confidence 999999999887 45555667899999999988533222111 3457789999999888765431 123455666
Q ss_pred CcEEEEEeccch
Q 046742 542 LNVLGINLTSSH 553 (769)
Q Consensus 542 L~~L~l~~~~~~ 553 (769)
|+.|+++.++..
T Consensus 273 L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 273 LNQLNLSSTGIA 284 (505)
T ss_pred hhhhhccccCcc
Confidence 666666644433
No 58
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.59 E-value=1.1e-07 Score=85.66 Aligned_cols=117 Identities=21% Similarity=0.247 Sum_probs=79.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCC--CCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNT--PNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIF 153 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 153 (769)
+.+++.|+|++|+|||++++++++..... ...-..++|+.+....+...+...++++++..... ..+.++..+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 34688999999999999999999986210 00034577999998889999999999999876532 356777778888
Q ss_pred HHHccCCE-EEEEecccCc-c--cccccCCCCCCCCCCcEEEEeecc
Q 046742 154 KILSRKKF-VLLLDDIWNR-V--DLEKLGIPPMNTNGSSKIVFTTRS 196 (769)
Q Consensus 154 ~~l~~k~~-LlVlDdv~~~-~--~~~~~~~~~~~~~~~~~iivTtR~ 196 (769)
+.+...+. +||+||++.. . .++.+.... + ..+.++|+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 88877655 9999999765 2 122221111 1 556778877765
No 59
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=5e-07 Score=99.33 Aligned_cols=190 Identities=13% Similarity=0.066 Sum_probs=108.2
Q ss_pred CCCCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhC
Q 046742 56 PQTLGLESTFDEVWRCLGEEHV-GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIG 134 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 134 (769)
..+||.+...+.|.+++..++. +.+.++|+.|+||||+|+.+++.+ .-..... . ...+.-...+.+...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L-nC~~~~~------~-~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL-NCETGVT------S-TPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCcCCC------C-CCCccCHHHHHHhcCCC
Confidence 5679999999999999987664 466899999999999999999886 2111000 0 00000011111110000
Q ss_pred CCC---cccccccHHHHHHHHH----HHHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeeccCC-cc-ccc
Q 046742 135 LYD---QSWKNKRLEIKAADIF----KILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTRSAG-GC-GLM 203 (769)
Q Consensus 135 ~~~---~~~~~~~~~~~~~~l~----~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR~~~-v~-~~~ 203 (769)
... +.......++..+.+. ....++.-++|+|+|+... ....+...+.....+.++|++|.+.. +. ...
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl 166 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVI 166 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHH
Confidence 000 0000111222211111 1123566799999998642 23333222222234567777776532 21 112
Q ss_pred cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHH
Q 046742 204 EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLAL 256 (769)
Q Consensus 204 ~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 256 (769)
.....+++.+++.++..+.+.+.+...... ...+....|++.++|-+..+
T Consensus 167 SRCq~feFkpLs~eEI~k~L~~Il~kEgI~---id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 167 SRCLQFTLRPLAVDEITKHLGAILEKEQIA---ADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred HhhheeeccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 345689999999999999998887554421 22567888999999977544
No 60
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=1.4e-06 Score=91.19 Aligned_cols=178 Identities=13% Similarity=0.132 Sum_probs=113.1
Q ss_pred CCCCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHhhcc---CCCCCCcEEEEEEe-CccccHHHHHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGEEHV-GIIGLYGMGEVGKTTLLTRINNKFS---NTPNGFDFVIWVVL-SRDLQIDRLQENIA 130 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~---~~~~~f~~~~wv~~-~~~~~~~~~~~~i~ 130 (769)
..++|.+..++++.+++..++. +...++|+.|+||||+|+.++..+- ....+.|...|... +.....++ ++++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 4578999999999999987654 4567999999999999999998651 12345665555442 22223333 33333
Q ss_pred HHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCc--ccccccCCCCCCCCCCcEEEEeeccCCcc-cc-cccc
Q 046742 131 RKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNR--VDLEKLGIPPMNTNGSSKIVFTTRSAGGC-GL-MEAH 206 (769)
Q Consensus 131 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~iivTtR~~~v~-~~-~~~~ 206 (769)
+.+.... ..+++-++|+|+++.. .....+.-.+.....++.+|++|.+.+.. .. ....
T Consensus 83 ~~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 83 EEVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 3332211 1245667778877543 33444433344444577888888655421 11 2234
Q ss_pred ceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHH
Q 046742 207 RIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITI 259 (769)
Q Consensus 207 ~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 259 (769)
..+++.+++.++....+.+..... ..+.++.++..++|.|..+...
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYNDI-------KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhcCC-------CHHHHHHHHHHcCCCHHHHHHH
Confidence 688999999999998887654311 1455778899999998765433
No 61
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.56 E-value=1.5e-07 Score=90.63 Aligned_cols=45 Identities=24% Similarity=0.313 Sum_probs=32.7
Q ss_pred CCCCchHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 57 QTLGLESTFDEVWRCLG---EEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~---~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.||||+++++++...+. ....+.+.|+|++|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999993 2456789999999999999999999988
No 62
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.56 E-value=5.1e-09 Score=109.64 Aligned_cols=132 Identities=31% Similarity=0.387 Sum_probs=59.7
Q ss_pred CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCCCCcccchhhhcCCCCcE
Q 046742 410 IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNIKELPEELKALVNLKC 489 (769)
Q Consensus 410 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~ 489 (769)
+.++..|.+|+++.|.+..+|.. +..|+ |++|-+++| .++.+|..++.+.+|..|+.+.|.+..+|..++.+.+|+.
T Consensus 117 i~~L~~lt~l~ls~NqlS~lp~~-lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQLSHLPDG-LCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRD 193 (722)
T ss_pred hhhhhHHHHhhhccchhhcCChh-hhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHH
Confidence 34444455555555544444443 22222 455555554 4444555555444555555555555555555555555555
Q ss_pred EecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEeccchh
Q 046742 490 LNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTSSHA 554 (769)
Q Consensus 490 L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 554 (769)
|+++.|+ +..+|.+ +. .-.|..||++.|++. .+| -.+..|+.|+.|-+..+....
T Consensus 194 l~vrRn~-l~~lp~E-l~-~LpLi~lDfScNkis-~iP------v~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 194 LNVRRNH-LEDLPEE-LC-SLPLIRLDFSCNKIS-YLP------VDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HHHhhhh-hhhCCHH-Hh-CCceeeeecccCcee-ecc------hhhhhhhhheeeeeccCCCCC
Confidence 5554443 3444444 22 222444444433322 122 234444444544444444433
No 63
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=1.1e-06 Score=96.45 Aligned_cols=195 Identities=16% Similarity=0.080 Sum_probs=108.9
Q ss_pred CCCCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhC
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIG 134 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 134 (769)
..++|.+..++.|.+++..+... .+.++|++|+||||+|+.+++.+ .-.+.+...+|.|.+.. .+......-...++
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~-~i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCL-AVRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhH-HHhcCCCCceEEec
Confidence 56799999999999999876654 55899999999999999999887 21122222233321110 00000000000000
Q ss_pred CCCcccccccHHHHHHHHHH-HHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeecc-CCccccc-cccceE
Q 046742 135 LYDQSWKNKRLEIKAADIFK-ILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTRS-AGGCGLM-EAHRIF 209 (769)
Q Consensus 135 ~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR~-~~v~~~~-~~~~~~ 209 (769)
... .....+..++...+.. -+.+++-++|+|+++... .+..+...+.....++.+|+++.. ..+.... .....+
T Consensus 92 ~~~-~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~ 170 (504)
T PRK14963 92 AAS-NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHF 170 (504)
T ss_pred ccc-cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEE
Confidence 000 0001111111111111 123456799999997542 233343333333344555555543 3332222 234679
Q ss_pred EcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHH
Q 046742 210 KVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLAL 256 (769)
Q Consensus 210 ~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 256 (769)
++.+++.++..+.+.+.+...+... ..+.++.|++.++|.+--+
T Consensus 171 ~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 171 RFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDA 214 (504)
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 9999999999999998875443211 2577899999999988544
No 64
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=8e-07 Score=97.49 Aligned_cols=194 Identities=13% Similarity=0.112 Sum_probs=109.4
Q ss_pred CCCCCchHHHHHHHHHhccCCccE-EEEEcCCCCcHHHHHHHHHhhccCCCCC--CcEEEEEEeCccccHHHHHHHHHH-
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGI-IGLYGMGEVGKTTLLTRINNKFSNTPNG--FDFVIWVVLSRDLQIDRLQENIAR- 131 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~v-v~I~G~gGiGKTtLa~~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~- 131 (769)
..+||.+..++.|.+++..++... +.++|+.|+||||+|+.+++.+- -.+. -.... +.....-...+.|..
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn-C~~p~~~~g~~----~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN-CTGADGEGGIT----AQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCccccccCC----CCCCcccHHHHHHHcC
Confidence 567999999999999998776554 58899999999999999998872 1000 00000 000000011111110
Q ss_pred ----HhCCCCcccccccHHHHHHHHHHH----HccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeec-cCCcc
Q 046742 132 ----KIGLYDQSWKNKRLEIKAADIFKI----LSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTR-SAGGC 200 (769)
Q Consensus 132 ----~l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR-~~~v~ 200 (769)
.+.+... .....+++.+.+... ..++.-++|||+++... .+..+...+..-..++++|++|. ...+.
T Consensus 91 ~hpDviEIdAa--s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 91 RFVDYIEMDAA--SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred CCCcceEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 0000000 111122222222111 23566799999998652 33333222322234555555544 44443
Q ss_pred cc-ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHH
Q 046742 201 GL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITI 259 (769)
Q Consensus 201 ~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 259 (769)
.. ......+.+..++.++..+.+.+.+..+... ...+..+.|++.++|.|.....+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~---~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA---HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 2234679999999999999998877544311 12456788999999999644433
No 65
>PRK04195 replication factor C large subunit; Provisional
Probab=98.53 E-value=1e-06 Score=97.67 Aligned_cols=177 Identities=18% Similarity=0.221 Sum_probs=108.9
Q ss_pred CCCCCCCchHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHH
Q 046742 54 PIPQTLGLESTFDEVWRCLGE----EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENI 129 (769)
Q Consensus 54 ~~~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 129 (769)
....++|+++.++++.+|+.. ...+.+.|+|++|+||||+|+.+++++ . ++ .+-++.+...+.. .+..+
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-~----~~-~ielnasd~r~~~-~i~~~ 84 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-G----WE-VIELNASDQRTAD-VIERV 84 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-C----CC-EEEEcccccccHH-HHHHH
Confidence 346689999999999999864 126789999999999999999999987 1 23 2333444332222 22333
Q ss_pred HHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc------ccccCCCCCCCCCCcEEEEeeccCC-ccc-
Q 046742 130 ARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD------LEKLGIPPMNTNGSSKIVFTTRSAG-GCG- 201 (769)
Q Consensus 130 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~~~~~~~~~~~~~~iivTtR~~~-v~~- 201 (769)
+....... .....++-+||+|+++.... ...+...+. ..+..||+|+.+.. ...
T Consensus 85 i~~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 85 AGEAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLR 146 (482)
T ss_pred HHHhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchh
Confidence 32221110 00113677999999986422 222211111 12344666665432 111
Q ss_pred -cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHH
Q 046742 202 -LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALIT 258 (769)
Q Consensus 202 -~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 258 (769)
.......+++.+++.++....+.+.+....... ..+..+.|++.++|-.-.+..
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i---~~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC---DDEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 112346789999999999999988875544222 257789999999887655443
No 66
>PRK08727 hypothetical protein; Validated
Probab=98.53 E-value=6.3e-07 Score=89.04 Aligned_cols=168 Identities=11% Similarity=0.080 Sum_probs=98.2
Q ss_pred CCCCC-chHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhC
Q 046742 56 PQTLG-LESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIG 134 (769)
Q Consensus 56 ~~~vG-r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 134 (769)
+.|++ -...+..+...........+.|+|++|+|||.|++.+++... +.. ..+++++..+ ....+.+
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~--~~~-~~~~y~~~~~------~~~~~~~--- 86 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE--QAG-RSSAYLPLQA------AAGRLRD--- 86 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH--HcC-CcEEEEeHHH------hhhhHHH---
Confidence 45654 444455554444444446799999999999999999998873 122 2455665321 1111111
Q ss_pred CCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc---ccc-ccCCCCCC-CCCCcEEEEeeccCCc---------c
Q 046742 135 LYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV---DLE-KLGIPPMN-TNGSSKIVFTTRSAGG---------C 200 (769)
Q Consensus 135 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~-~~~~~~~~-~~~~~~iivTtR~~~v---------~ 200 (769)
..+.+ .+.-+||+||++... .++ .+...+.. ...|..||+|++...- .
T Consensus 87 -----------------~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 87 -----------------ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred -----------------HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHH
Confidence 11122 223489999997432 121 11111111 1235569999985321 1
Q ss_pred ccccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHH
Q 046742 201 GLMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLAL 256 (769)
Q Consensus 201 ~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 256 (769)
..+.....+++++++.++-.+++++++..... .-..+..+.|++.++|-.-.+
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l---~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRGL---ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhCCCCHHHH
Confidence 22223458899999999999999987654332 222677888888887665444
No 67
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.4e-06 Score=94.97 Aligned_cols=187 Identities=17% Similarity=0.162 Sum_probs=108.8
Q ss_pred CCCCCCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHhhccCCCCC--C-----------------cEEEE
Q 046742 54 PIPQTLGLESTFDEVWRCLGEEHV-GIIGLYGMGEVGKTTLLTRINNKFSNTPNG--F-----------------DFVIW 113 (769)
Q Consensus 54 ~~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~--f-----------------~~~~w 113 (769)
.-+.+||.+.....|.+.+..+.. +.+.++|++|+||||+|+.+++.. .-... + ..++.
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l-~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL-NCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-ccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 336789999999999998887766 457899999999999999999876 21110 0 01122
Q ss_pred EEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCc--ccccccCCCCCCCCCCcEEE
Q 046742 114 VVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNR--VDLEKLGIPPMNTNGSSKIV 191 (769)
Q Consensus 114 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~ii 191 (769)
++.+...+... ++++.+.... ....+++-++|+|+++.. ...+.+...+........+|
T Consensus 91 l~aa~~~gid~-iR~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~I 151 (472)
T PRK14962 91 LDAASNRGIDE-IRKIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFV 151 (472)
T ss_pred EeCcccCCHHH-HHHHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEE
Confidence 22211111111 1122211110 012346679999999754 22333322232222344444
Q ss_pred Eeecc-CCcccc-ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcC-CchhHHHHHHHHh
Q 046742 192 FTTRS-AGGCGL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECD-GLPLALITIGRAM 263 (769)
Q Consensus 192 vTtR~-~~v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~Plai~~~~~~l 263 (769)
++|.+ ..+... ......+++.+++.++....+.+.+...... -..+..+.|++.++ +.+.++..+..+.
T Consensus 152 lattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~---i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 152 LATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE---IDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44443 223221 2234678999999999999998887543311 22567788888775 5567777776543
No 68
>PF14516 AAA_35: AAA-like domain
Probab=98.51 E-value=4.1e-05 Score=80.37 Aligned_cols=202 Identities=15% Similarity=0.150 Sum_probs=121.6
Q ss_pred CCCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-----ccHHHHH--
Q 046742 54 PIPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-----LQIDRLQ-- 126 (769)
Q Consensus 54 ~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~-- 126 (769)
.++.+|+|...-+++.+.+.+++ ..+.|.|+-.+|||+|...+.+... +..+. ++++++..- .+.++++
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~G-~~~~I~apRq~GKTSll~~l~~~l~--~~~~~-~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQPG-SYIRIKAPRQMGKTSLLLRLLERLQ--QQGYR-CVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcCC-CEEEEECcccCCHHHHHHHHHHHHH--HCCCE-EEEEEeecCCCcccCCHHHHHHH
Confidence 34566899977888888887644 5888999999999999999998883 23443 457776542 2455444
Q ss_pred --HHHHHHhCCCCcc---cc--cccHHHHHHHHHHHH-c--cCCEEEEEecccCccccc----ccCCCC----C-----C
Q 046742 127 --ENIARKIGLYDQS---WK--NKRLEIKAADIFKIL-S--RKKFVLLLDDIWNRVDLE----KLGIPP----M-----N 183 (769)
Q Consensus 127 --~~i~~~l~~~~~~---~~--~~~~~~~~~~l~~~l-~--~k~~LlVlDdv~~~~~~~----~~~~~~----~-----~ 183 (769)
..+.+++++..+- +. ..........+.+.+ . +++.+|+||+|+..-+.. .+...+ . .
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 4445555544310 10 111222223333332 2 589999999998542211 111100 0 0
Q ss_pred CCCCcEEEEe-eccCCc-cc----cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHH
Q 046742 184 TNGSSKIVFT-TRSAGG-CG----LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALI 257 (769)
Q Consensus 184 ~~~~~~iivT-tR~~~v-~~----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 257 (769)
....-++++. +..... .. -......++|++|+.+|..+|+.+....-. ....++|...+||+|..+.
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHHH
Confidence 0111122222 211111 11 122345789999999999999887643221 3349999999999999999
Q ss_pred HHHHHhcCC
Q 046742 258 TIGRAMAFK 266 (769)
Q Consensus 258 ~~~~~l~~~ 266 (769)
.++..+..+
T Consensus 238 ~~~~~l~~~ 246 (331)
T PF14516_consen 238 KACYLLVEE 246 (331)
T ss_pred HHHHHHHHc
Confidence 999999763
No 69
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.51 E-value=1e-06 Score=87.74 Aligned_cols=171 Identities=16% Similarity=0.172 Sum_probs=100.0
Q ss_pred CCCC-Cc-hHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHh
Q 046742 56 PQTL-GL-ESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKI 133 (769)
Q Consensus 56 ~~~v-Gr-~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 133 (769)
+.|+ |. ...+..+.++......+.+.|+|+.|+|||+|++.+++... ..-..+.++.+..... .
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~---~-------- 87 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW---F-------- 87 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh---h--------
Confidence 3444 63 33455555655555557899999999999999999998862 1223456665432100 0
Q ss_pred CCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCc---cccccc-CCCCCC--CCCCcEEEEeeccCC---------
Q 046742 134 GLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNR---VDLEKL-GIPPMN--TNGSSKIVFTTRSAG--------- 198 (769)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~~-~~~~~~--~~~~~~iivTtR~~~--------- 198 (769)
...+.+.+.. --+|++||++.. ..|+.. ...+.. ...+.++|+||+...
T Consensus 88 ---------------~~~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~ 151 (235)
T PRK08084 88 ---------------VPEVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPD 151 (235)
T ss_pred ---------------hHHHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHH
Confidence 0011112211 137899999653 222211 111111 112247899988542
Q ss_pred ccccccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHH
Q 046742 199 GCGLMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITI 259 (769)
Q Consensus 199 v~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 259 (769)
+..++.....+++++++.++-.+++++++..... .-.++..+.|++.+.|..-.+..+
T Consensus 152 L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~---~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 152 LASRLDWGQIYKLQPLSDEEKLQALQLRARLRGF---ELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhhcCCHHHHHHH
Confidence 1223344578999999999999999886643321 223678888888888666554433
No 70
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=1.6e-06 Score=95.40 Aligned_cols=184 Identities=15% Similarity=0.111 Sum_probs=109.2
Q ss_pred CCCCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHhhccCCC---C---------------CCcEEEEEEe
Q 046742 56 PQTLGLESTFDEVWRCLGEEHV-GIIGLYGMGEVGKTTLLTRINNKFSNTP---N---------------GFDFVIWVVL 116 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~---~---------------~f~~~~wv~~ 116 (769)
..+||.+..++.|...+..++. +.+.++|+.|+||||+|+.+++.+.... . .|.-.++++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 5679999999999999987654 4477999999999999999998761100 0 1111222221
Q ss_pred CccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHH-HHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEe
Q 046742 117 SRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFK-ILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFT 193 (769)
Q Consensus 117 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivT 193 (769)
...... .+..++.+.+.. -..+++-++|+|+++... ..+.+...+.....++.+|++
T Consensus 96 as~~gv--------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 96 ASRTGV--------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred ccccCH--------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 111111 112222222221 123567799999997542 233332223222345556654
Q ss_pred ecc-CCcccc-ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch-hHHHHHHHH
Q 046742 194 TRS-AGGCGL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP-LALITIGRA 262 (769)
Q Consensus 194 tR~-~~v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~~ 262 (769)
|.+ ..+... ......+++.+++.++..+.+.+.+...+. ....+..+.|++.++|-+ .|+..+-.+
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 443 333322 233568999999999999888886654331 122567788999999966 455555433
No 71
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=8.4e-07 Score=94.91 Aligned_cols=190 Identities=13% Similarity=0.065 Sum_probs=109.3
Q ss_pred CCCCCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHh
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKI 133 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 133 (769)
...+||.+..+..|..++..++.+ .+.++|+.|+||||+|+.++..+ .-...... ..+..... ...+....
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L-nce~~~~~---~pCg~C~s----C~~i~~g~ 88 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL-NCENPIGN---EPCNECTS----CLEITKGI 88 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc-CcccccCc---cccCCCcH----HHHHHccC
Confidence 356799999999999999877754 57899999999999999999987 21111000 00110001 11111110
Q ss_pred C-----CCC-cccccccHHHHHHHHHH-HHccCCEEEEEecccCc--ccccccCCCCCCCCCCcEEEEeec-cCCcccc-
Q 046742 134 G-----LYD-QSWKNKRLEIKAADIFK-ILSRKKFVLLLDDIWNR--VDLEKLGIPPMNTNGSSKIVFTTR-SAGGCGL- 202 (769)
Q Consensus 134 ~-----~~~-~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~iivTtR-~~~v~~~- 202 (769)
. +.. ......+..++.+.+.. ...++.-++|+|+++.. ..++.+...+.....+..+|++|. ...+...
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 0 000 00011122222222221 12356679999999854 234444322322223455554444 3444322
Q ss_pred ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhH
Q 046742 203 MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLA 255 (769)
Q Consensus 203 ~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 255 (769)
......|.+.+++.++..+.+.+.+...+.. -..+....|++.++|.+.-
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~---~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ---YDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCChHHH
Confidence 2234679999999999999998887554321 2267789999999999853
No 72
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=3e-06 Score=89.36 Aligned_cols=199 Identities=12% Similarity=0.036 Sum_probs=110.4
Q ss_pred cCCCCCCCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhcc-CCCCCCcE-EE-EEEeCccccHHHHHH
Q 046742 52 ERPIPQTLGLESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFS-NTPNGFDF-VI-WVVLSRDLQIDRLQE 127 (769)
Q Consensus 52 ~~~~~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~-~~~~~f~~-~~-wv~~~~~~~~~~~~~ 127 (769)
|+....++|.+...+.+.+.+..++.+ .+.++|+.|+||+|+|..++..+- +....... .. -.+.. ....-...+
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~c~ 93 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPVAR 93 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChHHH
Confidence 334567899999999999999887655 588999999999999999988761 11011000 00 00000 000001111
Q ss_pred HHHHHhCCCC---------cc----cccccHHHHHHHHHHHHc-----cCCEEEEEecccCcc--cccccCCCCCCCCCC
Q 046742 128 NIARKIGLYD---------QS----WKNKRLEIKAADIFKILS-----RKKFVLLLDDIWNRV--DLEKLGIPPMNTNGS 187 (769)
Q Consensus 128 ~i~~~l~~~~---------~~----~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~ 187 (769)
.+.. ..-++ +. .....+++ +..+.+.+. +++.++|+|+++... ....+...+.....+
T Consensus 94 ~i~~-~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 94 RIAA-GAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHc-cCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111 00000 00 01112333 223333332 456799999997542 222222112222235
Q ss_pred cEEEEeeccCC-cccc-ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHH
Q 046742 188 SKIVFTTRSAG-GCGL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIG 260 (769)
Q Consensus 188 ~~iivTtR~~~-v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 260 (769)
+.+|++|.+.+ +... ......+.+.+++.++..+++.+...... .+....+++.++|.|.....+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 56666666553 3221 23346899999999999999987643211 2333788999999998665543
No 73
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.50 E-value=1.3e-08 Score=98.18 Aligned_cols=134 Identities=22% Similarity=0.217 Sum_probs=105.7
Q ss_pred CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCCCCcccchhhhcCCCCcE
Q 046742 410 IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNIKELPEELKALVNLKC 489 (769)
Q Consensus 410 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~ 489 (769)
...+..|.+|++++|.++.+..+ ..-.+.+++|++|.| .+..+.+ +..|++|+.|+|++|.++++--.-.+|.|.+.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDES-VKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhh-hhhccceeEEecccc-ceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 35677899999999999888776 677899999999999 5655553 78899999999999999888666678899999
Q ss_pred EecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEeccchh
Q 046742 490 LNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTSSHA 554 (769)
Q Consensus 490 L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 554 (769)
|.+++|. +.++.. +++|-+|..||+.+|++-.. .....+++|+.|.++.+..+....
T Consensus 357 L~La~N~-iE~LSG--L~KLYSLvnLDl~~N~Ie~l-----deV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 357 LKLAQNK-IETLSG--LRKLYSLVNLDLSSNQIEEL-----DEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eehhhhh-Hhhhhh--hHhhhhheeccccccchhhH-----HHhcccccccHHHHHhhcCCCccc
Confidence 9999996 666655 78899999999998875322 123456778888877777665543
No 74
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.48 E-value=1.7e-06 Score=98.84 Aligned_cols=171 Identities=19% Similarity=0.229 Sum_probs=99.8
Q ss_pred CCCCCCCchHHHH---HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHH
Q 046742 54 PIPQTLGLESTFD---EVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIA 130 (769)
Q Consensus 54 ~~~~~vGr~~~~~---~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 130 (769)
..+.+||++..+. .+.+.+..+..+.+.++|++|+||||+|+.+++.. ...|. .++... ...
T Consensus 26 tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i-------- 90 (725)
T PRK13341 26 TLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGV-------- 90 (725)
T ss_pred cHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhh--------
Confidence 3356899999885 56777777777788999999999999999999886 33331 111110 000
Q ss_pred HHhCCCCcccccccHHHHHHHHHHHH--ccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEe--eccCC--ccc-
Q 046742 131 RKIGLYDQSWKNKRLEIKAADIFKIL--SRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFT--TRSAG--GCG- 201 (769)
Q Consensus 131 ~~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivT--tR~~~--v~~- 201 (769)
.+..+......+.+ .+++.+|||||++... ..+.+...+ ..+..++++ |.+.. +..
T Consensus 91 ------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 91 ------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred ------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhH
Confidence 11111222222222 2467799999997542 233332211 234445553 33321 111
Q ss_pred cccccceEEcCCCCHHHHHHHHHhhhCCCc----cCCCCCHHHHHHHHHHHcCCchh
Q 046742 202 LMEAHRIFKVKCLEHKEAWELFQMKVGRET----LESHLQIPELAEIVAKECDGLPL 254 (769)
Q Consensus 202 ~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~~~~~i~~~~~g~Pl 254 (769)
.......+++++++.++...++.+.+.... .....-..+..+.|++.+.|.--
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 112245799999999999999988764110 01112235677888998887654
No 75
>PLN03150 hypothetical protein; Provisional
Probab=98.47 E-value=3.7e-07 Score=104.18 Aligned_cols=105 Identities=25% Similarity=0.349 Sum_probs=67.5
Q ss_pred ccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCCCCc-ccchhhhcCCCCcEEecCC
Q 046742 416 LITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNIK-ELPEELKALVNLKCLNLDY 494 (769)
Q Consensus 416 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~ 494 (769)
++.|+|++|.+....+..+..+++|+.|+|++|...+.+|..++.+.+|+.|++++|++. .+|..+++|++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566677777666444444666777777777777544566766777777777777777666 5666677777777777777
Q ss_pred CcCcCccCcccccC-Ccccceeeeeccc
Q 046742 495 TKSLCRIPRHLISN-FSMLYILRIVDCH 521 (769)
Q Consensus 495 ~~~l~~~p~~~i~~-L~~L~~L~l~~~~ 521 (769)
|.....+|.. ++. +.++..+++.+|.
T Consensus 500 N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChH-HhhccccCceEEecCCc
Confidence 7655566665 333 3455566666554
No 76
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=1.7e-06 Score=96.70 Aligned_cols=193 Identities=14% Similarity=0.116 Sum_probs=108.7
Q ss_pred CCCCCCchHHHHHHHHHhccCCccE-EEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHH-
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVGI-IGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARK- 132 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~v-v~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~- 132 (769)
...+||.+..++.|.+.+..++.+. +.++|+.|+||||+|+.+++.+- -...+. ......-...+.|...
T Consensus 15 f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~-c~~~~~-------~~pCg~C~~C~~i~~g~ 86 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN-CETGIT-------ATPCGECDNCREIEQGR 86 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh-hccCCC-------CCCCCCCHHHHHHHcCC
Confidence 3677999999999999998776654 57899999999999999998871 111000 0000111111111110
Q ss_pred ----hCCCCc-ccccccHHHHHHHHHH-HHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeecc-CCcccc-
Q 046742 133 ----IGLYDQ-SWKNKRLEIKAADIFK-ILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTRS-AGGCGL- 202 (769)
Q Consensus 133 ----l~~~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR~-~~v~~~- 202 (769)
+.+... .....+..++++.+.. -..++.-++|||+++... ..+.+.-.+-.-..+.++|++|.+ ..+...
T Consensus 87 ~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 87 FVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHH
Confidence 000000 0011112222222211 134667799999998542 233332222222234555555444 444322
Q ss_pred ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHH
Q 046742 203 MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALIT 258 (769)
Q Consensus 203 ~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 258 (769)
......|++.+++.++..+.+.+.+..... ....+..+.|++.++|.+..+..
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i---~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQI---PFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 223568999999999999999887643321 11256678899999998864433
No 77
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.46 E-value=1.8e-07 Score=71.28 Aligned_cols=60 Identities=42% Similarity=0.615 Sum_probs=39.4
Q ss_pred CCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcccc-ccccCCcCCCEEeccCCCC
Q 046742 414 PSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLP-SGISRLVSLQHLNLSLTNI 474 (769)
Q Consensus 414 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~l 474 (769)
++|++|++++|.++.+++..|..+++|++|++++| .++.+| ..+.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 35667777777777777666777777777777766 444444 3566677777777766653
No 78
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.46 E-value=2.8e-06 Score=96.21 Aligned_cols=204 Identities=11% Similarity=0.030 Sum_probs=114.6
Q ss_pred CCCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCC---cEEEEEEeCcc---ccHHHHHH
Q 046742 54 PIPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGF---DFVIWVVLSRD---LQIDRLQE 127 (769)
Q Consensus 54 ~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f---~~~~wv~~~~~---~~~~~~~~ 127 (769)
..+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.. .....+ ...-|+.+... .+...+..
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 346779999999999888876667789999999999999999998765 222222 11234433211 11221111
Q ss_pred H---------------HHHHhCCCCc----------------ccccccHHHHHHHHHHHHccCCEEEEEecccCc--ccc
Q 046742 128 N---------------IARKIGLYDQ----------------SWKNKRLEIKAADIFKILSRKKFVLLLDDIWNR--VDL 174 (769)
Q Consensus 128 ~---------------i~~~l~~~~~----------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~ 174 (769)
. .+...+.... ..... ....+..+.+.++++++.++-|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccc
Confidence 1 1111111100 00111 122456677777777777776665543 335
Q ss_pred cccCCCCCCCCCCcEEEE--eeccCCc-cccc-cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcC
Q 046742 175 EKLGIPPMNTNGSSKIVF--TTRSAGG-CGLM-EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECD 250 (769)
Q Consensus 175 ~~~~~~~~~~~~~~~iiv--TtR~~~v-~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 250 (769)
+.+...+....+...+++ ||++... ...+ .....+.+.+++.+|.++++.+.+...... -..+..+.|.+.++
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~---ls~eal~~L~~ys~ 386 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH---LAAGVEELIARYTI 386 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHCCC
Confidence 555444444444444554 5564432 1111 123467899999999999999877543211 11455666666665
Q ss_pred CchhHHHHHHHH
Q 046742 251 GLPLALITIGRA 262 (769)
Q Consensus 251 g~Plai~~~~~~ 262 (769)
.-+.+++.++..
T Consensus 387 ~gRraln~L~~~ 398 (615)
T TIGR02903 387 EGRKAVNILADV 398 (615)
T ss_pred cHHHHHHHHHHH
Confidence 545666555443
No 79
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=2e-06 Score=93.29 Aligned_cols=180 Identities=16% Similarity=0.116 Sum_probs=109.0
Q ss_pred CCCCCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhcc-CCC-----------------CCCcEEEEEE
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFS-NTP-----------------NGFDFVIWVV 115 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~-~~~-----------------~~f~~~~wv~ 115 (769)
...+||.+..++.|.+.+..++.+ .+.++|+.|+||||+|+.++..+- ... +.+.-++.++
T Consensus 12 f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid 91 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID 91 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe
Confidence 366799999999999998877655 688999999999999999987541 000 0111123333
Q ss_pred eCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEe
Q 046742 116 LSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFT 193 (769)
Q Consensus 116 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivT 193 (769)
.+...+.++ ++++.+..... -+.++.-++|+|+++... .++.+...+.....++++|++
T Consensus 92 aas~~~vdd-IR~Iie~~~~~------------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 92 AASNTSVDD-IKVILENSCYL------------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred cccCCCHHH-HHHHHHHHHhc------------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 322222221 22222221100 012456689999997542 233332223233345666666
Q ss_pred ecc-CCcccc-ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHH
Q 046742 194 TRS-AGGCGL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLAL 256 (769)
Q Consensus 194 tR~-~~v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 256 (769)
|.. ..+... ......+++.+++.++..+.+.+.+...... -..+.++.|++.++|.+..+
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~---i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE---HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 543 333222 2234678999999999999999887654421 22567789999999887543
No 80
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=4e-06 Score=91.74 Aligned_cols=194 Identities=14% Similarity=0.077 Sum_probs=108.3
Q ss_pred CCCCCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcE-EEEEEeCccccHHHHHHHHHHH
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHV-GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDF-VIWVVLSRDLQIDRLQENIARK 132 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~ 132 (769)
-..+||.+..+..|...+..++. +.+.++|+.|+||||+|+.+++.+ .-...... --+..+. .-.....+...
T Consensus 20 f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~L-nc~~~~~~~~~~~~C~----~C~~C~~i~~~ 94 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV-NCSALITENTTIKTCE----QCTNCISFNNH 94 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh-cCccccccCcCcCCCC----CChHHHHHhcC
Confidence 35669999999999998876654 578899999999999999999887 21111000 0000000 00011111100
Q ss_pred hC-----CCC-cccccccHHHHHHHHHH-HHccCCEEEEEecccCc--ccccccCCCCCCCCCCcEEEE-eeccCCcccc
Q 046742 133 IG-----LYD-QSWKNKRLEIKAADIFK-ILSRKKFVLLLDDIWNR--VDLEKLGIPPMNTNGSSKIVF-TTRSAGGCGL 202 (769)
Q Consensus 133 l~-----~~~-~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~iiv-TtR~~~v~~~ 202 (769)
.. +.. ......+..+.++.... -+.+++-++|+|+++.. ..+..+...+......+.+|+ ||+...+...
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHH
Confidence 00 000 00011122222222111 12356779999999864 234444333333334556655 4444444322
Q ss_pred c-cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHH
Q 046742 203 M-EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLAL 256 (769)
Q Consensus 203 ~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 256 (769)
. .....+++.+++.++..+.+.+.+...... ...+..+.|++.++|.+..+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~---ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLK---TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 2 234578999999999999999888654421 12567788999999877433
No 81
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.44 E-value=5.4e-07 Score=89.42 Aligned_cols=93 Identities=22% Similarity=0.199 Sum_probs=63.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc--ccHHHHHHHH-----HHHhCCCCcccccccHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD--LQIDRLQENI-----ARKIGLYDQSWKNKRLEIK 148 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i-----~~~l~~~~~~~~~~~~~~~ 148 (769)
.-..++|+|++|+|||||++++++.. .. .+|+.++|+.+... .+..++++.+ +..++.+.. ....-....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~-~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-TK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPE-RHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHH-HHHHHHHHH
Confidence 34578999999999999999999998 33 48999999997776 6899999998 333332110 000111122
Q ss_pred HHHHHHH-HccCCEEEEEecccCc
Q 046742 149 AADIFKI-LSRKKFVLLLDDIWNR 171 (769)
Q Consensus 149 ~~~l~~~-l~~k~~LlVlDdv~~~ 171 (769)
.+..... -.++++++++|++...
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHh
Confidence 2222222 2478999999999653
No 82
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=2e-06 Score=94.75 Aligned_cols=178 Identities=14% Similarity=0.108 Sum_probs=107.1
Q ss_pred CCCCCchHHHHHHHHHhccCCccE-EEEEcCCCCcHHHHHHHHHhhccCCCC-------------------CCcEEEEEE
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGI-IGLYGMGEVGKTTLLTRINNKFSNTPN-------------------GFDFVIWVV 115 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~v-v~I~G~gGiGKTtLa~~~~~~~~~~~~-------------------~f~~~~wv~ 115 (769)
..+||.+..++.|.+++..++.+. +.++|+.|+||||+|+.++..+ .-.. .+.-++.++
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l-~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL-NCEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh-cCCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 567999999999999998776654 6899999999999999999876 2111 111122332
Q ss_pred eCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEe
Q 046742 116 LSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFT 193 (769)
Q Consensus 116 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivT 193 (769)
......+++ .+++++.+... -..++.-++|+|+|+... ....+...+.....++++|++
T Consensus 95 aas~~~v~~-iR~l~~~~~~~------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 95 AASRTKVED-TRELLDNIPYA------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred ccccCCHHH-HHHHHHHHhhc------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 222212221 12222222110 113556689999998642 333332222222345666665
Q ss_pred eccC-Ccccc-ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHH
Q 046742 194 TRSA-GGCGL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLAL 256 (769)
Q Consensus 194 tR~~-~v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 256 (769)
|.+. .+... ......+++.+++.++....+.+.+...+.. -..+..+.|++.++|.+..+
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~---~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE---FENAALDLLARAANGSVRDA 217 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHH
Confidence 5433 33221 2234568999999999888887776544311 12566788999999987544
No 83
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.43 E-value=1.7e-07 Score=102.05 Aligned_cols=121 Identities=31% Similarity=0.480 Sum_probs=71.2
Q ss_pred Eeeccccc-ccccCCCCCCCccEEEccCCCCcccchhhhcCCC-cceEEEecCCCCCccccccccCCcCCCEEeccCCCC
Q 046742 397 MSLMENQV-QSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMP-SLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNI 474 (769)
Q Consensus 397 L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l 474 (769)
+....+.+ .........+.+..|++.+|.+..+++. ...++ +|+.|++++| .+..+|..+..+++|+.|+++.|++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchh
Confidence 44444444 3333344445666666666666666553 33332 6666666666 5666655666666666666666666
Q ss_pred cccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccc
Q 046742 475 KELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCH 521 (769)
Q Consensus 475 ~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 521 (769)
.++|...+.+++|+.|++++|. +..+|.. +..+..|++|.+++|.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~-~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNK-ISDLPPE-IELLSALEELDLSNNS 220 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCc-cccCchh-hhhhhhhhhhhhcCCc
Confidence 6666655566666666666665 5666653 3445556666666553
No 84
>PRK09087 hypothetical protein; Validated
Probab=98.43 E-value=4.4e-06 Score=82.26 Aligned_cols=161 Identities=14% Similarity=0.070 Sum_probs=96.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKI 155 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 155 (769)
..+.+.|+|++|+|||+|++.++... . ..+++. ..+..++...+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~-------~~~i~~------~~~~~~~~~~~---------------------- 86 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-D-------ALLIHP------NEIGSDAANAA---------------------- 86 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-C-------CEEecH------HHcchHHHHhh----------------------
Confidence 34679999999999999999988765 1 123321 11111111111
Q ss_pred HccCCEEEEEecccCcc-cccccCCCCCC-CCCCcEEEEeecc---------CCccccccccceEEcCCCCHHHHHHHHH
Q 046742 156 LSRKKFVLLLDDIWNRV-DLEKLGIPPMN-TNGSSKIVFTTRS---------AGGCGLMEAHRIFKVKCLEHKEAWELFQ 224 (769)
Q Consensus 156 l~~k~~LlVlDdv~~~~-~~~~~~~~~~~-~~~~~~iivTtR~---------~~v~~~~~~~~~~~l~~l~~~~a~~l~~ 224 (769)
.+ -+|++||++... +-+++...+.. ...|..||+|++. +++...+.....+++++++.++-.++++
T Consensus 87 -~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 87 -AE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred -hc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 11 278889996432 11112111111 1235678888874 2233344556789999999999999999
Q ss_pred hhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHHHh-------cCCCChhHHHHHHHH
Q 046742 225 MKVGRETLESHLQIPELAEIVAKECDGLPLALITIGRAM-------AFKKTPQEWKDAIQV 278 (769)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l-------~~~~~~~~w~~~l~~ 278 (769)
+.+...... -.++..+.|++.+.|..-++..+-..+ .++-+....+++++.
T Consensus 164 ~~~~~~~~~---l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~ 221 (226)
T PRK09087 164 KLFADRQLY---VDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLNE 221 (226)
T ss_pred HHHHHcCCC---CCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 988543322 236888889999888877665433222 122455666666553
No 85
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=7.3e-08 Score=98.19 Aligned_cols=64 Identities=23% Similarity=0.322 Sum_probs=33.2
Q ss_pred CCCCCccEEEccCCCCcccch-hhhcCCCcceEEEecCCCCCcc---ccccccCCcCCCEEeccCCCCc
Q 046742 411 PSCPSLITLFLNNNNLKVITD-GFFQFMPSLKVLNLSNNQSLKQ---LPSGISRLVSLQHLNLSLTNIK 475 (769)
Q Consensus 411 ~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~---lp~~i~~l~~L~~L~l~~~~l~ 475 (769)
++++.|+...|.++.+..++. .....|++++.||||.| .+.. +-..+..|++|+.|+++.|++.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccccc
Confidence 556667777776665544432 22455666666666666 2221 1222344555555555555443
No 86
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=3.9e-06 Score=93.67 Aligned_cols=193 Identities=12% Similarity=0.118 Sum_probs=108.4
Q ss_pred CCCCCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhccCCCCC--CcEEEEEEeCccccHHHHHHHHHH
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFSNTPNG--FDFVIWVVLSRDLQIDRLQENIAR 131 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~ 131 (769)
-..+||.+..+..|.+++..++.. .+.++|+.|+||||+|+.+++.+ .-.+. ....-. ...+.-...+.|..
T Consensus 15 f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L-nC~~~~~~~~~~~----~pCg~C~~C~~i~~ 89 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL-NCQGPDGQGGITA----TPCGVCQACRDIDS 89 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCCCcccccCCCC----CCCCccHHHHHHHc
Confidence 367799999999999999877664 56899999999999999998876 11110 000000 00011111121110
Q ss_pred H-----hCCCCcccccccHHHHHHHHHHH----HccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeecc-CCc
Q 046742 132 K-----IGLYDQSWKNKRLEIKAADIFKI----LSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTRS-AGG 199 (769)
Q Consensus 132 ~-----l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR~-~~v 199 (769)
. +.+.. ......++..+.+... ..++.-++|||+|+... .+..+...+.....++++|++|.+ ..+
T Consensus 90 g~h~D~~elda--as~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 90 GRFVDYTELDA--ASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred CCCCceeecCc--ccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 0 00000 0111122222222110 12445689999998642 333333333333345566665543 333
Q ss_pred cc-cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHH
Q 046742 200 CG-LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALI 257 (769)
Q Consensus 200 ~~-~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 257 (769)
.. .......+++.+++.++..+.+.+.+...+.. ...+..+.|++.++|.+..+.
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~---ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP---AEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 22 22334689999999999999998877554421 125678889999998775443
No 87
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.42 E-value=5.5e-06 Score=88.82 Aligned_cols=182 Identities=13% Similarity=0.128 Sum_probs=108.7
Q ss_pred CCCCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHhhccCC-CC------------------CCcEEEEEE
Q 046742 56 PQTLGLESTFDEVWRCLGEEHV-GIIGLYGMGEVGKTTLLTRINNKFSNT-PN------------------GFDFVIWVV 115 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~------------------~f~~~~wv~ 115 (769)
..+||.++.++.+.+++..+.. +.+.++|+.|+||||+|+.++...... .. +++. ++++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 5679999999999999977654 467789999999999999998876211 11 2222 2332
Q ss_pred eCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEe
Q 046742 116 LSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFT 193 (769)
Q Consensus 116 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivT 193 (769)
.....+. +.++++.+.+... -+.+++-++|+|+++... ....+...+.....++.+|++
T Consensus 93 ~~~~~~~-~~~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 93 AASNNGV-DDIREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred ccccCCH-HHHHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 2211111 1122222222110 012455689999986542 233332223222345666666
Q ss_pred eccCC-cccc-ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHH
Q 046742 194 TRSAG-GCGL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIG 260 (769)
Q Consensus 194 tR~~~-v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 260 (769)
|.+.. +... ......+++.+++.++..+++...+...... -..+.++.+++.++|.|..+....
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~---i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK---IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCChHHHHHHH
Confidence 65433 2211 1234578999999999999998876543311 125788899999999986554443
No 88
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=2.3e-06 Score=95.08 Aligned_cols=179 Identities=13% Similarity=0.124 Sum_probs=107.0
Q ss_pred CCCCCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhccCCCCCC-------------------cEEEEE
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFSNTPNGF-------------------DFVIWV 114 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f-------------------~~~~wv 114 (769)
...+||.+..+..|.+++..++.+ .+.++|+.|+||||+|+.++..+ .-.... .-++.+
T Consensus 15 FddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L-nC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL-NCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh-cccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 356799999999999999877654 57899999999999999998876 111110 001111
Q ss_pred EeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHH-HHccCCEEEEEecccCccc--ccccCCCCCCCCCCcEEE
Q 046742 115 VLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFK-ILSRKKFVLLLDDIWNRVD--LEKLGIPPMNTNGSSKIV 191 (769)
Q Consensus 115 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~ii 191 (769)
+....... .++.+++..... -..+++-++|+|+++.... ...+...+.....++++|
T Consensus 94 daAs~~gV--------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fI 153 (709)
T PRK08691 94 DAASNTGI--------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (709)
T ss_pred eccccCCH--------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEE
Confidence 11111111 111111111110 1235667999999975432 222222222223456677
Q ss_pred EeeccCC-cccc-ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHH
Q 046742 192 FTTRSAG-GCGL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALI 257 (769)
Q Consensus 192 vTtR~~~-v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 257 (769)
++|.+.. +... .+....+.+.+++.++..+.+.+.+...... -..+.++.|++.++|.+.-+.
T Consensus 154 LaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~---id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 154 LATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA---YEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred EEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHhCCCHHHHH
Confidence 6665432 2211 1233568889999999999999887654422 125678899999999885443
No 89
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.41 E-value=2.1e-06 Score=91.77 Aligned_cols=169 Identities=20% Similarity=0.254 Sum_probs=97.8
Q ss_pred CCCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 57 QTLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
.+.|+++.+++|.+.+.. ...+.+.++|++|+|||++|+.+++.. ...| +.+.. .
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~----~ 190 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG----S 190 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----H
Confidence 457999999999887731 134568999999999999999999987 2333 22211 1
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHH-ccCCEEEEEecccCcc----------------cccccCCCCC--CC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKIL-SRKKFVLLLDDIWNRV----------------DLEKLGIPPM--NT 184 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~~~~~~~--~~ 184 (769)
.+... ..+ .. ......+.+.. ...+.+|+|||++... .+..+...+. ..
T Consensus 191 ~l~~~---~~g--------~~-~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 191 ELVRK---YIG--------EG-ARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred HHHHH---hhh--------HH-HHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 11111 010 11 11122222222 3467899999987531 0111111111 12
Q ss_pred CCCcEEEEeeccCCc-----cccccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 185 NGSSKIVFTTRSAGG-----CGLMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 185 ~~~~~iivTtR~~~v-----~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
..+.+||.||...+. ....+-...++++..+.++..++|+..+......... ....+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~----~~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV----DLEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC----CHHHHHHHcCCCC
Confidence 346678888875432 1111234578999999999999998877543322111 2466777777764
No 90
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=4.8e-06 Score=88.58 Aligned_cols=172 Identities=12% Similarity=0.048 Sum_probs=101.6
Q ss_pred CCCCCchHHHHHHHHHhccCC----------ccEEEEEcCCCCcHHHHHHHHHhhccCCC------------------CC
Q 046742 56 PQTLGLESTFDEVWRCLGEEH----------VGIIGLYGMGEVGKTTLLTRINNKFSNTP------------------NG 107 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~----------~~vv~I~G~gGiGKTtLa~~~~~~~~~~~------------------~~ 107 (769)
..++|.+..++.|.+++..+. .+.+.++|+.|+|||++|+.++...--.. .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 457899999999999997653 45688999999999999999988651000 01
Q ss_pred CcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHH-----ccCCEEEEEecccCcc--cccccCCC
Q 046742 108 FDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKIL-----SRKKFVLLLDDIWNRV--DLEKLGIP 180 (769)
Q Consensus 108 f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~ 180 (769)
.+ +.++.... .....++.. .+.+.+ .+++-++|+|+++... ....+...
T Consensus 85 pD-~~~i~~~~----------------------~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~ 140 (394)
T PRK07940 85 PD-VRVVAPEG----------------------LSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKA 140 (394)
T ss_pred CC-EEEecccc----------------------ccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHH
Confidence 11 11111100 011122221 122221 2455688899998642 11222111
Q ss_pred CCCCCCCcEEEEeeccC-Ccccc-ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHH
Q 046742 181 PMNTNGSSKIVFTTRSA-GGCGL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALIT 258 (769)
Q Consensus 181 ~~~~~~~~~iivTtR~~-~v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 258 (769)
+.....+..+|++|.+. .+... ......+.+.+++.++..+.+.+..+. ..+.+..+++.++|.|.....
T Consensus 141 LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~--------~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 141 VEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV--------DPETARRAARASQGHIGRARR 212 (394)
T ss_pred hhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC--------CHHHHHHHHHHcCCCHHHHHH
Confidence 22223345566655553 33322 223468999999999999988754321 146678899999999975544
Q ss_pred H
Q 046742 259 I 259 (769)
Q Consensus 259 ~ 259 (769)
+
T Consensus 213 l 213 (394)
T PRK07940 213 L 213 (394)
T ss_pred H
Confidence 4
No 91
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.40 E-value=1.9e-08 Score=101.75 Aligned_cols=107 Identities=21% Similarity=0.181 Sum_probs=54.0
Q ss_pred CCccEEEccCCCCccc--chhhhcCCCcceEEEecCCCCCccc-ccc-ccCCcCCCEEeccCC-CCcc--cchhhhcCCC
Q 046742 414 PSLITLFLNNNNLKVI--TDGFFQFMPSLKVLNLSNNQSLKQL-PSG-ISRLVSLQHLNLSLT-NIKE--LPEELKALVN 486 (769)
Q Consensus 414 ~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~l-p~~-i~~l~~L~~L~l~~~-~l~~--lp~~~~~l~~ 486 (769)
..|+.|.+.||.-... .-.+...++++..|++.+|..+++- -.+ -..+.+|++|++..| .++. +-.....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4567777777732111 1223456777777777777544331 112 234666777777764 4442 2222345667
Q ss_pred CcEEecCCCcCcCccC-cccccCCcccceeeeecc
Q 046742 487 LKCLNLDYTKSLCRIP-RHLISNFSMLYILRIVDC 520 (769)
Q Consensus 487 L~~L~l~~~~~l~~~p-~~~i~~L~~L~~L~l~~~ 520 (769)
|.+|+++.|..+..-. .....++..++.+...+|
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 7777777665433200 011334444455444444
No 92
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=3.6e-06 Score=92.65 Aligned_cols=196 Identities=14% Similarity=0.053 Sum_probs=106.1
Q ss_pred CCCCCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHh
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHV-GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKI 133 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 133 (769)
-..++|++..++.+.+++..++. +.+.++|+.|+||||+|+.++..+. -.+ |... ...+.-...+.+....
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~-C~~------~~~~-~~Cg~C~sCr~i~~~~ 86 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN-CLN------PKDG-DCCNSCSVCESINTNQ 86 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CCC------CCCC-CCCcccHHHHHHHcCC
Confidence 36679999999999999976554 4688999999999999999998862 111 1110 0001111111111110
Q ss_pred CCCC---cccccccHHHH---HHHHHH-HHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEee-ccCCcccc-
Q 046742 134 GLYD---QSWKNKRLEIK---AADIFK-ILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTT-RSAGGCGL- 202 (769)
Q Consensus 134 ~~~~---~~~~~~~~~~~---~~~l~~-~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTt-R~~~v~~~- 202 (769)
.... +.......++. ...+.. -..+++-++|+|+++... ....+...+.....++.+|++| ....+...
T Consensus 87 h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 87 SVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTI 166 (605)
T ss_pred CCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHH
Confidence 0000 00000111111 111111 112344579999997542 2333322222222345555544 33333221
Q ss_pred ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchh-HHHHHHH
Q 046742 203 MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPL-ALITIGR 261 (769)
Q Consensus 203 ~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 261 (769)
......+++.+++.++....+.+.+...... -..+.++.+++.++|.+. |+..+-.
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~---Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKIK---IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2234678999999999999998877543311 125678889999999664 4444443
No 93
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=5e-06 Score=89.66 Aligned_cols=197 Identities=12% Similarity=0.058 Sum_probs=107.7
Q ss_pred CCCCCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEe-CccccHHHHHHHHHHH
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVL-SRDLQIDRLQENIARK 132 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~ 132 (769)
...++|.+..++.|.+++..++.+ .+.++|+.|+||||+|+.++..+ .-...+....|... ......-...+.+...
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l-~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh-cCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 367799999999999999877665 47899999999999999999887 21111111111100 0000011111111110
Q ss_pred hCCCC---cccccccHHHHHHHHHHHH-----ccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEee-ccCCccc
Q 046742 133 IGLYD---QSWKNKRLEIKAADIFKIL-----SRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTT-RSAGGCG 201 (769)
Q Consensus 133 l~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTt-R~~~v~~ 201 (769)
..... +.......++..+ +.+.+ .+++-++|+|+++... .++.+...+......+.+|++| +...+..
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHH
Confidence 00000 0000011222222 22222 3456689999997543 3333322233333455665555 3333322
Q ss_pred cc-cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHH
Q 046742 202 LM-EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLAL 256 (769)
Q Consensus 202 ~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 256 (769)
.. .....+++.+++.++..+.+...+..... .-..+.++.+++.++|.+--+
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~---~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGI---SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 21 23457899999999999888887643321 122678899999999977533
No 94
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.36 E-value=3.9e-06 Score=83.53 Aligned_cols=171 Identities=12% Similarity=0.051 Sum_probs=97.4
Q ss_pred CCCC-CchHH-HHHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHH
Q 046742 56 PQTL-GLEST-FDEVWRCLGE-EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARK 132 (769)
Q Consensus 56 ~~~v-Gr~~~-~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 132 (769)
+.|+ |..++ +..+.++... ...+.+.|+|+.|+|||+||+.+++... .... ...+++..... ..
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~-~~~~i~~~~~~------~~---- 84 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS--YGGR-NARYLDAASPL------LA---- 84 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCCC-cEEEEehHHhH------HH----
Confidence 5555 55444 4444444432 3456788999999999999999998762 1222 34455432211 00
Q ss_pred hCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc--ccccCCCCCC-CCCCc-EEEEeeccCCccc-------
Q 046742 133 IGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD--LEKLGIPPMN-TNGSS-KIVFTTRSAGGCG------- 201 (769)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~~~~~~~-~~~~~-~iivTtR~~~v~~------- 201 (769)
+ ... ...-++|+||++.... ...+...+.. ...+. .+|+|++......
T Consensus 85 ~--------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~ 143 (227)
T PRK08903 85 F--------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLR 143 (227)
T ss_pred H--------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHH
Confidence 0 011 2234788999975422 1122111211 11233 4666666432211
Q ss_pred -cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHHHh
Q 046742 202 -LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGRAM 263 (769)
Q Consensus 202 -~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 263 (769)
.+.....++++++++++-..++.+.+..... .-.++..+.+++...|.+..+..+...+
T Consensus 144 sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v---~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 144 TRLGWGLVYELKPLSDADKIAALKAAAAERGL---QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHhcCeEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1122368899999998877777765433221 1226788889999999998877666554
No 95
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=9.7e-06 Score=87.03 Aligned_cols=178 Identities=14% Similarity=0.169 Sum_probs=103.6
Q ss_pred CCCCCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHhhccCC-----CCCCcEE-EEEEeCccccHHHHHH
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHV-GIIGLYGMGEVGKTTLLTRINNKFSNT-----PNGFDFV-IWVVLSRDLQIDRLQE 127 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~-----~~~f~~~-~wv~~~~~~~~~~~~~ 127 (769)
-..++|.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.+++..... ...|... +-++.....+. +..+
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i~ 94 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DDIR 94 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HHHH
Confidence 36679999999999999987654 478899999999999999998876210 0112111 11111111111 1122
Q ss_pred HHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEee-ccCCcccc-c
Q 046742 128 NIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTT-RSAGGCGL-M 203 (769)
Q Consensus 128 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTt-R~~~v~~~-~ 203 (769)
++++.+... -..+++-++|+|+++... .+..+...+.....++.+|+++ ....+... .
T Consensus 95 ~l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 95 NLIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 222222110 012455689999987542 2333322222222344555554 33333221 2
Q ss_pred cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchh
Q 046742 204 EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPL 254 (769)
Q Consensus 204 ~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 254 (769)
+....++..+++.++....+.+.+...+... ..+.++.+++.++|.+-
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i---~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKF---EDDALHIIAQKADGALR 204 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHH
Confidence 2345789999999999999988775443211 25788889999998665
No 96
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=7e-06 Score=91.22 Aligned_cols=183 Identities=15% Similarity=0.127 Sum_probs=108.3
Q ss_pred CCCCCchHHHHHHHHHhccCCccE-EEEEcCCCCcHHHHHHHHHhhccCCCC-------------------CCcEEEEEE
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGI-IGLYGMGEVGKTTLLTRINNKFSNTPN-------------------GFDFVIWVV 115 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~v-v~I~G~gGiGKTtLa~~~~~~~~~~~~-------------------~f~~~~wv~ 115 (769)
..+||.+..++.+.+++..++.+. +.++|+.|+||||+|+.++..+ .-.. .|.-.++++
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l-~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL-NCETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 567999999999999998776654 5799999999999999999876 1111 011122222
Q ss_pred eCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc--ccccCCCCCCCCCCcEEEEe
Q 046742 116 LSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD--LEKLGIPPMNTNGSSKIVFT 193 (769)
Q Consensus 116 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~iivT 193 (769)
.......+ .++++.+..... -..+++-++|+|+++.... ...+...+.....++.+|++
T Consensus 95 ~~~~~~vd-~ir~l~~~~~~~------------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~ 155 (527)
T PRK14969 95 AASNTQVD-AMRELLDNAQYA------------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILA 155 (527)
T ss_pred ccccCCHH-HHHHHHHHHhhC------------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEE
Confidence 11111111 112222221100 1135667999999976532 33332222222345566665
Q ss_pred eccC-Ccccc-ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchh-HHHHHHH
Q 046742 194 TRSA-GGCGL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPL-ALITIGR 261 (769)
Q Consensus 194 tR~~-~v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 261 (769)
|.+. .+... ......+++.+++.++..+.+.+.+...+.. ...+.++.|++.++|.+. |+..+-.
T Consensus 156 t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~---~~~~al~~la~~s~Gslr~al~lldq 223 (527)
T PRK14969 156 TTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP---FDATALQLLARAAAGSMRDALSLLDQ 223 (527)
T ss_pred eCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5443 33222 2234678999999999999888877543311 125667889999999775 4444433
No 97
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.34 E-value=8.6e-06 Score=78.37 Aligned_cols=161 Identities=14% Similarity=0.061 Sum_probs=91.8
Q ss_pred HHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHhhccCCC-------------------CCCcEEEEEEeCccccHHHHH
Q 046742 67 EVWRCLGEEHV-GIIGLYGMGEVGKTTLLTRINNKFSNTP-------------------NGFDFVIWVVLSRDLQIDRLQ 126 (769)
Q Consensus 67 ~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~~~ 126 (769)
.+.+.+..+.. +.+.++|+.|+||||+|+.++....... .+.+. .++.......-.+.+
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH
Confidence 45666666655 5688999999999999999988862110 11111 122111110001111
Q ss_pred HHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeeccC-Ccccc-
Q 046742 127 ENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTRSA-GGCGL- 202 (769)
Q Consensus 127 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR~~-~v~~~- 202 (769)
+++.+.+... -..+.+-++|+||++... ..+.+...+......+.+|++|++. .+...
T Consensus 82 ~~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i 143 (188)
T TIGR00678 82 RELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTI 143 (188)
T ss_pred HHHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHH
Confidence 1222222110 012456689999997642 2333322233333455666666543 22221
Q ss_pred ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhH
Q 046742 203 MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLA 255 (769)
Q Consensus 203 ~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 255 (769)
......+++.+++.++..+.+.+. + . ..+.++.+++.++|.|..
T Consensus 144 ~sr~~~~~~~~~~~~~~~~~l~~~-g--i------~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 144 RSRCQVLPFPPLSEEALLQWLIRQ-G--I------SEEAAELLLALAGGSPGA 187 (188)
T ss_pred HhhcEEeeCCCCCHHHHHHHHHHc-C--C------CHHHHHHHHHHcCCCccc
Confidence 123468999999999999999886 1 1 156789999999998853
No 98
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=4.3e-06 Score=87.70 Aligned_cols=200 Identities=13% Similarity=0.043 Sum_probs=112.2
Q ss_pred cCCCCCCCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhccCCC-CCCcEEEEEEeCccccHHHHHHHH
Q 046742 52 ERPIPQTLGLESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFSNTP-NGFDFVIWVVLSRDLQIDRLQENI 129 (769)
Q Consensus 52 ~~~~~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i 129 (769)
|+....++|.++..+.+...+..++.+ .+.|+|+.|+||||+|..++..+-... ..+.... ...........+.+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHHH
Confidence 345577899999999999999876644 588999999999999999999872100 0011110 00011111223333
Q ss_pred HHH-------hCCCC-cc----cccccHHHHHHHHHHHHc-----cCCEEEEEecccCccc--ccccCCCCCCCCCCcE-
Q 046742 130 ARK-------IGLYD-QS----WKNKRLEIKAADIFKILS-----RKKFVLLLDDIWNRVD--LEKLGIPPMNTNGSSK- 189 (769)
Q Consensus 130 ~~~-------l~~~~-~~----~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~- 189 (769)
... +..+. .. ......++.. .+.+.+. ++.-++|+|+++.... ...+...+.....+..
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 221 00000 00 0112234332 3444432 4667999999986421 2222111111122334
Q ss_pred EEEeeccCCccccc-cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHH
Q 046742 190 IVFTTRSAGGCGLM-EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIG 260 (769)
Q Consensus 190 iivTtR~~~v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 260 (769)
|++|++...+.... .....+++.+++.++..+++.+...... -..+.+..+++.++|.|.....+.
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44454443332221 2336899999999999999987432111 124567889999999998665444
No 99
>PLN03150 hypothetical protein; Provisional
Probab=98.32 E-value=1.5e-06 Score=99.34 Aligned_cols=110 Identities=25% Similarity=0.380 Sum_probs=93.4
Q ss_pred eEEEEeeccccccc-ccC-CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEecc
Q 046742 393 VIRRMSLMENQVQS-LSK-IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLS 470 (769)
Q Consensus 393 ~l~~L~l~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~ 470 (769)
.++.|++.+|.+.. +|. +..+++|+.|+|++|.+....+..++.+++|++|+|++|...+.+|..+++|.+|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 58899999998864 333 7889999999999999985555558999999999999997777899999999999999999
Q ss_pred CCCCc-ccchhhhcC-CCCcEEecCCCcCcCccC
Q 046742 471 LTNIK-ELPEELKAL-VNLKCLNLDYTKSLCRIP 502 (769)
Q Consensus 471 ~~~l~-~lp~~~~~l-~~L~~L~l~~~~~l~~~p 502 (769)
+|++. .+|..++.+ .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99988 899988764 578899999987665554
No 100
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=7.8e-06 Score=91.50 Aligned_cols=196 Identities=13% Similarity=0.099 Sum_probs=109.8
Q ss_pred CCCCCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhccCCCCCCc--EEEEEEeCccccHHHHHHHHHH
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFSNTPNGFD--FVIWVVLSRDLQIDRLQENIAR 131 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~ 131 (769)
...+||.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++.+ .-..... ...+-.+ ..-...+.|..
T Consensus 23 f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L-~c~~~~~~~~~~~~~c----g~c~~C~~i~~ 97 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL-NYEGPDGDGGPTIDLC----GVGEHCQAIME 97 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh-CcCCccccCCCccccC----cccHHHHHHhc
Confidence 356799999999999999877644 68899999999999999999886 1111000 0000000 00111111111
Q ss_pred HhCCCC---cccccccHHHHHHHHHHH-----HccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEee-ccCCcc
Q 046742 132 KIGLYD---QSWKNKRLEIKAADIFKI-----LSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTT-RSAGGC 200 (769)
Q Consensus 132 ~l~~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTt-R~~~v~ 200 (769)
.-.... +.......+++.+ +.+. +.+++-++|+|+++... ..+.+...+..-..++++|++| ....+.
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCCceEEecccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 110000 0001111222221 1111 22455689999997553 2333322232233456666555 333332
Q ss_pred ccc-cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHH
Q 046742 201 GLM-EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITI 259 (769)
Q Consensus 201 ~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 259 (769)
... .....+++.+++.++....+.+.+...... -..+.++.|++.++|.+..+...
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~---i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE---VEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 222 234678999999999999998887544311 12577889999999998655433
No 101
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.32 E-value=4.3e-07 Score=98.89 Aligned_cols=156 Identities=25% Similarity=0.335 Sum_probs=123.5
Q ss_pred CCCCcceeEEEEeecccccccccCCCCCC--CccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcC
Q 046742 386 PETGKWQVIRRMSLMENQVQSLSKIPSCP--SLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVS 463 (769)
Q Consensus 386 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 463 (769)
......+.+..|++.+|.+..++...... +|+.|++++|.+..++.. +..+++|+.|++++| .+.++|...+.+..
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~ 187 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSN 187 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhh
Confidence 33444568999999999999998866654 899999999999988643 788999999999999 88899988889999
Q ss_pred CCEEeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCc
Q 046742 464 LQHLNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLN 543 (769)
Q Consensus 464 L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~ 543 (769)
|+.|++++|++..+|..++.+..|+.|.+++|.. ...+.. +.++.++..|.+.+|..... ...+..+++++
T Consensus 188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~-~~~~~~l~~l~l~~n~~~~~-------~~~~~~l~~l~ 258 (394)
T COG4886 188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNSI-IELLSS-LSNLKNLSGLELSNNKLEDL-------PESIGNLSNLE 258 (394)
T ss_pred hhheeccCCccccCchhhhhhhhhhhhhhcCCcc-eecchh-hhhcccccccccCCceeeec-------cchhccccccc
Confidence 9999999999999999888888999999999963 344443 78888888888776654332 13345566666
Q ss_pred EEEEEeccc
Q 046742 544 VLGINLTSS 552 (769)
Q Consensus 544 ~L~l~~~~~ 552 (769)
.|+++.+..
T Consensus 259 ~L~~s~n~i 267 (394)
T COG4886 259 TLDLSNNQI 267 (394)
T ss_pred eeccccccc
Confidence 666664443
No 102
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.31 E-value=5.2e-07 Score=68.67 Aligned_cols=56 Identities=38% Similarity=0.640 Sum_probs=29.8
Q ss_pred cceEEEecCCCCCccccc-cccCCcCCCEEeccCCCCcccchh-hhcCCCCcEEecCCC
Q 046742 439 SLKVLNLSNNQSLKQLPS-GISRLVSLQHLNLSLTNIKELPEE-LKALVNLKCLNLDYT 495 (769)
Q Consensus 439 ~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~ 495 (769)
+|++|++++| .+..+|. .+..+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555555555 4444442 345555555555555555555432 455555555555555
No 103
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=7.8e-06 Score=90.60 Aligned_cols=196 Identities=13% Similarity=0.118 Sum_probs=110.0
Q ss_pred CCCCCchHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhC
Q 046742 56 PQTLGLESTFDEVWRCLGEEH-VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIG 134 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 134 (769)
..+||.+..++.|.+++..++ .+.+.++|+.|+||||+|+.+++.+ .-....+. ...+.-...+.+.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L-~C~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKAL-NCETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhc-cccCCCCC-------CCCcccHHHHHHhcCCC
Confidence 567999999999999998765 4677789999999999999999887 21110000 00011111111111000
Q ss_pred CCC---cccccccHHHHHHHHHHH-----HccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeecc-CCcccc-
Q 046742 135 LYD---QSWKNKRLEIKAADIFKI-----LSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTRS-AGGCGL- 202 (769)
Q Consensus 135 ~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR~-~~v~~~- 202 (769)
... +.......++.. .+.+. ..+++-++|+|+++... ....+...+........+|++|.+ ..+...
T Consensus 88 pDv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 88 VDVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 000 000001111111 12111 23566799999997642 233332222222234556665554 333222
Q ss_pred ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch-hHHHHHHHHh
Q 046742 203 MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP-LALITIGRAM 263 (769)
Q Consensus 203 ~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~~l 263 (769)
......+++.+++.++..+.+...+...... -..+.++.|++.++|.+ .|+..+...+
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi~---id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVD---YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1234578999999999999998876543311 22577889999999954 6777776544
No 104
>PRK05642 DNA replication initiation factor; Validated
Probab=98.30 E-value=1.1e-05 Score=80.22 Aligned_cols=150 Identities=17% Similarity=0.258 Sum_probs=89.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILS 157 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 157 (769)
..+.|+|+.|+|||.|++.+++... ..-..++|++.. ++... ...+.+.++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~------~~~~~--------------------~~~~~~~~~ 96 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLA------ELLDR--------------------GPELLDNLE 96 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHH------HHHhh--------------------hHHHHHhhh
Confidence 5789999999999999999998762 112346777532 22211 012233333
Q ss_pred cCCEEEEEecccCc---ccccc-cCCCCCC-CCCCcEEEEeeccCCc---------cccccccceEEcCCCCHHHHHHHH
Q 046742 158 RKKFVLLLDDIWNR---VDLEK-LGIPPMN-TNGSSKIVFTTRSAGG---------CGLMEAHRIFKVKCLEHKEAWELF 223 (769)
Q Consensus 158 ~k~~LlVlDdv~~~---~~~~~-~~~~~~~-~~~~~~iivTtR~~~v---------~~~~~~~~~~~l~~l~~~~a~~l~ 223 (769)
+-. +||+||+... ..++. +...+.. ...|..||+|++...- ..++.....+++++++.++-.+++
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 323 6788999633 22222 2111111 1235678888875321 122233467899999999999999
Q ss_pred HhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHH
Q 046742 224 QMKVGRETLESHLQIPELAEIVAKECDGLPLALITIG 260 (769)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 260 (769)
++++..... .-.++..+.|++.+.|-.-.+..+-
T Consensus 176 ~~ka~~~~~---~l~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 176 QLRASRRGL---HLTDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHcCC---CCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 866543221 1226778888888887765554433
No 105
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.29 E-value=1.3e-05 Score=77.79 Aligned_cols=176 Identities=19% Similarity=0.182 Sum_probs=104.4
Q ss_pred CCCCCCCchHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHH
Q 046742 54 PIPQTLGLESTFDEVWRCLGE-----EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQEN 128 (769)
Q Consensus 54 ~~~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 128 (769)
.-..|||.++..++|.=++.. +..-.|.++||+|.||||||.-+++.+ . ..+ -+.-+....-..-+..
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-g--vn~----k~tsGp~leK~gDlaa 96 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-G--VNL----KITSGPALEKPGDLAA 96 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-c--CCe----EecccccccChhhHHH
Confidence 346789999999998777743 456689999999999999999999998 2 222 1111111111111111
Q ss_pred HHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc---------cccccCCCC-CCCCCC-----------
Q 046742 129 IARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV---------DLEKLGIPP-MNTNGS----------- 187 (769)
Q Consensus 129 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~~~~~~-~~~~~~----------- 187 (769)
++..+ + ..=++.+|+++... ..+.+.... ...+++
T Consensus 97 iLt~L-----------------------e-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 97 ILTNL-----------------------E-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred HHhcC-----------------------C-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 22122 1 22245566665321 111111110 111222
Q ss_pred cEEEEeeccCCccccccc--cceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHHHh
Q 046742 188 SKIVFTTRSAGGCGLMEA--HRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGRAM 263 (769)
Q Consensus 188 ~~iivTtR~~~v~~~~~~--~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 263 (769)
.-|=.|||...+..-++. .-+.+++..+.+|-.++..+.+..-+... .++.+.+|++...|-|.-..-+-+..
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i---~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI---DEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC---ChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 233458887765433322 23579999999999999999875433222 26789999999999997665554443
No 106
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.26 E-value=3.5e-06 Score=82.60 Aligned_cols=192 Identities=15% Similarity=0.136 Sum_probs=116.7
Q ss_pred ccCCCCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEE-EEEeCccccHHHHHHHH
Q 046742 51 EERPIPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVI-WVVLSRDLQIDRLQENI 129 (769)
Q Consensus 51 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i 129 (769)
.|+....++|.+..+.-|.+.+.....++...+||+|.|||+-|+.++..+ .-.+.|.+++ -.+++...... +.++
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGis-vvr~- 107 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGIS-VVRE- 107 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhccccccccc-chhh-
Confidence 344456779999999999999987778889999999999999999999887 3345555433 23444433222 0000
Q ss_pred HHHhCCCCcccccccHHHHHHHHHHHHc--cCC-EEEEEecccCc--ccccccCCCCCCCCCCcEEEEeecc-CCccc-c
Q 046742 130 ARKIGLYDQSWKNKRLEIKAADIFKILS--RKK-FVLLLDDIWNR--VDLEKLGIPPMNTNGSSKIVFTTRS-AGGCG-L 202 (769)
Q Consensus 130 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~-~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~iivTtR~-~~v~~-~ 202 (769)
...+............. -++ -++|||+++.. +.|..++..+......++.++.+.. ..+-. .
T Consensus 108 -----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 108 -----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred -----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 11111111110100000 123 48999999865 3466554444444445555544332 22211 1
Q ss_pred ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch-hHHHHH
Q 046742 203 MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP-LALITI 259 (769)
Q Consensus 203 ~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~ 259 (769)
......|+.++|..++...-++.++..++...+ .+..+.|++.++|-= -|+.++
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 223457899999999999999999876663322 577888999998754 344444
No 107
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.6e-05 Score=88.53 Aligned_cols=197 Identities=12% Similarity=0.060 Sum_probs=108.5
Q ss_pred CCCCCchHHHHHHHHHhccCCccE-EEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHh-
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGI-IGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKI- 133 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~v-v~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l- 133 (769)
..+||.+..++.|.+++..++... +.++|+.|+||||+|+.++..+-- .+..+ +-.+ +.-...+.+...-
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c-~~~~~---~~pC----g~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC-AQGPT---ATPC----GVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-ccCCC---CCcc----cccHHHHHhhcccC
Confidence 667999999999999998876555 679999999999999999987611 11000 0000 0001111111000
Q ss_pred ------CCCCcc-cccccHHHHHHHHHH-HHccCCEEEEEecccCc--ccccccCCCCCCCCCCcEEEEee-ccCCcccc
Q 046742 134 ------GLYDQS-WKNKRLEIKAADIFK-ILSRKKFVLLLDDIWNR--VDLEKLGIPPMNTNGSSKIVFTT-RSAGGCGL 202 (769)
Q Consensus 134 ------~~~~~~-~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~iivTt-R~~~v~~~ 202 (769)
.+.... ....+..++.+.+.. -..+++-++|+|+++.. .....+...+.....+..+|++| ....+...
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~T 164 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPT 164 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHH
Confidence 000000 001111111111111 12345669999999754 22333322232223355555544 43333322
Q ss_pred -ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchh-HHHHHHHHh
Q 046742 203 -MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPL-ALITIGRAM 263 (769)
Q Consensus 203 -~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~~l 263 (769)
......+++.+++.++..+.+.+.+...... -..+.+..|++.++|-+- ++..+-.++
T Consensus 165 I~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~---i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 165 IRSRTHHYPFRLLPPRTMRALIARICEQEGVV---VDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2234679999999999999988877544311 125677889999999774 555554443
No 108
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.25 E-value=5.4e-06 Score=81.33 Aligned_cols=161 Identities=16% Similarity=0.133 Sum_probs=94.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKIL 156 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 156 (769)
...+.|+|+.|+|||.|.+++++.... ...-..++++ +.+++...+...+... . ...+++.+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~-~~~~~~v~y~------~~~~f~~~~~~~~~~~-------~----~~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQK-QHPGKRVVYL------SAEEFIREFADALRDG-------E----IEEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH-HCTTS-EEEE------EHHHHHHHHHHHHHTT-------S----HHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh-ccccccceee------cHHHHHHHHHHHHHcc-------c----chhhhhhh
Confidence 356899999999999999999998721 1122246666 5666777777665321 1 23344555
Q ss_pred ccCCEEEEEecccCccc---cccc-CCCCC-CCCCCcEEEEeeccCCc---------cccccccceEEcCCCCHHHHHHH
Q 046742 157 SRKKFVLLLDDIWNRVD---LEKL-GIPPM-NTNGSSKIVFTTRSAGG---------CGLMEAHRIFKVKCLEHKEAWEL 222 (769)
Q Consensus 157 ~~k~~LlVlDdv~~~~~---~~~~-~~~~~-~~~~~~~iivTtR~~~v---------~~~~~~~~~~~l~~l~~~~a~~l 222 (769)
++ -=+|++||++.... +++. ...+. ....|.+||+|++...- ..++...-.+++++++.++-.++
T Consensus 96 ~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 RS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp CT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred hc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 53 33889999975422 2211 11110 01235689999965321 12233456899999999999999
Q ss_pred HHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHH
Q 046742 223 FQMKVGRETLESHLQIPELAEIVAKECDGLPLALITI 259 (769)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 259 (769)
+.+.+...... -.++.++.+++.+.+..-.+..+
T Consensus 175 l~~~a~~~~~~---l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 175 LQKKAKERGIE---LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHTT-----S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHHhCCC---CcHHHHHHHHHhhcCCHHHHHHH
Confidence 99988654422 23677788888776555444333
No 109
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=1.7e-05 Score=89.31 Aligned_cols=189 Identities=11% Similarity=0.059 Sum_probs=104.5
Q ss_pred CCCCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhC
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIG 134 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 134 (769)
..+||.+..++.|.+++..++.. .+.++|+.|+||||+|+.++..+- -....+ .+ ..-...... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln-C~~~~~--~~-------~pC~~C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN-CSHKTD--LL-------EPCQECIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccccCC--CC-------CchhHHHHh---hc
Confidence 56799999999999999876544 567899999999999999998761 111000 00 000000000 00
Q ss_pred CCCc-----c---cccccHHHHHHHHHH-HHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEE-EeeccCCcccc
Q 046742 135 LYDQ-----S---WKNKRLEIKAADIFK-ILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIV-FTTRSAGGCGL 202 (769)
Q Consensus 135 ~~~~-----~---~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~ii-vTtR~~~v~~~ 202 (769)
...+ . ....+..++.+.+.. -..+++-++|+|+++... .+..+...+.....++.+| +|++...+...
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0000 0 001111222222111 123566799999997542 2333322222222344444 45444444322
Q ss_pred -ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchh-HHHHHH
Q 046742 203 -MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPL-ALITIG 260 (769)
Q Consensus 203 -~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 260 (769)
......+++.+++.++..+.+...+...... ...+.++.+++.++|-+. |+..+-
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~---id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENIS---YEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2334689999999999999988766443311 125668889999998764 444433
No 110
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.6e-05 Score=89.09 Aligned_cols=200 Identities=14% Similarity=0.075 Sum_probs=107.9
Q ss_pred CCCCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEE-eCccccHHHHHHHHHHHh
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVV-LSRDLQIDRLQENIARKI 133 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l 133 (769)
..+||.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++.+ .-....+.-.|.. +....+.-...+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L-~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh-CCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 56799999999999999876654 47899999999999999999887 2111111001111 000011111111111100
Q ss_pred CCCC---cccccccHHHHHHHHHH----HHccCCEEEEEecccCccc--ccccCCCCCCCCCCcEEEEee-ccCCcccc-
Q 046742 134 GLYD---QSWKNKRLEIKAADIFK----ILSRKKFVLLLDDIWNRVD--LEKLGIPPMNTNGSSKIVFTT-RSAGGCGL- 202 (769)
Q Consensus 134 ~~~~---~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~iivTt-R~~~v~~~- 202 (769)
.... +.......+++...+.. -..+++-++|+|+++.... .+.+...+..-...+.+|++| +...+...
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 0000 00011112222222111 1234566899999876532 333322222222345555544 33333221
Q ss_pred ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchh-HHHHH
Q 046742 203 MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPL-ALITI 259 (769)
Q Consensus 203 ~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 259 (769)
......+++.+++.++....+.+.+...... -..+.++.+++.++|..- ++..+
T Consensus 175 ~SRc~~vef~~l~~~ei~~~L~~i~~~egi~---I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 175 ASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ---IDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HhhceEEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHHHHHHHH
Confidence 2345679999999999998888766433211 126778899999999554 44433
No 111
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.23 E-value=2.5e-05 Score=83.86 Aligned_cols=169 Identities=19% Similarity=0.239 Sum_probs=96.2
Q ss_pred CCCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 57 QTLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
.+.|+++.++++.+.+.. ..++.|.++|++|+|||++|+.+++.. ... |+.+.. .
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~----~ 199 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG----S 199 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----H
Confidence 346999999999887631 245678999999999999999999987 222 222221 1
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHH-ccCCEEEEEecccCcc------------c----ccccCCCCC--CC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKIL-SRKKFVLLLDDIWNRV------------D----LEKLGIPPM--NT 184 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~~~~~~~--~~ 184 (769)
.+. ... ..... .....+.+.. ...+.+|+|||++... . +..+...+. ..
T Consensus 200 ~l~----~~~-------~g~~~-~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 200 ELV----QKF-------IGEGA-RLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred HHh----Hhh-------ccchH-HHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 111 111 01111 1222222222 3467899999997531 0 111111111 12
Q ss_pred CCCcEEEEeeccCCcccc-----ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 185 NGSSKIVFTTRSAGGCGL-----MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 185 ~~~~~iivTtR~~~v~~~-----~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
..+..||.||...+.... ..-...+++++.+.++-.++|+..+.......... ...+++.+.|.-
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 235667777765433211 12345789999999999999998775433222222 455666666544
No 112
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=2e-05 Score=91.40 Aligned_cols=179 Identities=12% Similarity=0.135 Sum_probs=106.9
Q ss_pred CCCCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhccCCCC---------------------CCcEEEE
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFSNTPN---------------------GFDFVIW 113 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~~~---------------------~f~~~~w 113 (769)
..+||.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++.+--... +++ +++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v~e 93 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-VTE 93 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-EEE
Confidence 56799999999999999877655 4789999999999999999988721100 011 112
Q ss_pred EEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHH---HH-HHHHccCCEEEEEecccCcc--cccccCCCCCCCCCC
Q 046742 114 VVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAA---DI-FKILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGS 187 (769)
Q Consensus 114 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~---~l-~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~ 187 (769)
++.... ..++++.+ .+ ..-..++.-++|||+++... ....+...+..-..+
T Consensus 94 idaas~-----------------------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~ 150 (824)
T PRK07764 94 IDAASH-----------------------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEH 150 (824)
T ss_pred eccccc-----------------------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCC
Confidence 211111 11222221 11 11123556689999998652 233332223223345
Q ss_pred cEEEEeecc-CCcccc-ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchh-HHHHHHH
Q 046742 188 SKIVFTTRS-AGGCGL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPL-ALITIGR 261 (769)
Q Consensus 188 ~~iivTtR~-~~v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 261 (769)
+.+|++|.+ ..+... ......|++..++.++..+++.+.+...... ...+....|++.++|.+. ++..+-.
T Consensus 151 ~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~---id~eal~lLa~~sgGdlR~Al~eLEK 224 (824)
T PRK07764 151 LKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP---VEPGVLPLVIRAGGGSVRDSLSVLDQ 224 (824)
T ss_pred eEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 566655543 334322 2234678999999999999998876443311 125567889999999774 3333333
No 113
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=2.7e-05 Score=85.32 Aligned_cols=183 Identities=14% Similarity=0.144 Sum_probs=107.6
Q ss_pred CCCCCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhccCC-CCC----------------Cc-EEEEEE
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFSNT-PNG----------------FD-FVIWVV 115 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~-~~~----------------f~-~~~wv~ 115 (769)
-..+||.+...+.|...+..++.+ +..++|+.|+||||+|+.++..+-.. ... ++ .++.++
T Consensus 13 fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eld 92 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMD 92 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEec
Confidence 356799999999999999877665 45799999999999999998876110 000 11 112221
Q ss_pred eCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEe
Q 046742 116 LSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFT 193 (769)
Q Consensus 116 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivT 193 (769)
.......++ ++++++..... -..+++-++|+|+++... ....+...+.....++++|++
T Consensus 93 aas~~gId~-IRelie~~~~~------------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ 153 (535)
T PRK08451 93 AASNRGIDD-IRELIEQTKYK------------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILA 153 (535)
T ss_pred cccccCHHH-HHHHHHHHhhC------------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEE
Confidence 111111111 11111111100 012455689999997542 223332222222345666766
Q ss_pred eccC-Cccc-cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHH
Q 046742 194 TRSA-GGCG-LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITI 259 (769)
Q Consensus 194 tR~~-~v~~-~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 259 (769)
|.+. .+.. .......+++.+++.++..+.+.+.+...+.. -..+.++.|++.++|.+.-+..+
T Consensus 154 ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~---i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 154 TTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS---YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHHH
Confidence 6543 2221 12234688999999999999998877554321 12578889999999988554433
No 114
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.21 E-value=6.7e-06 Score=83.52 Aligned_cols=154 Identities=14% Similarity=0.078 Sum_probs=80.6
Q ss_pred CCCCchHHHHHHHHHhc---------------cCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcccc
Q 046742 57 QTLGLESTFDEVWRCLG---------------EEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQ 121 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~---------------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 121 (769)
.++|.+..+++|.+... .+....+.++|++|+||||+|+.+++.+... +......++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecHH--
Confidence 47888888877754431 1234567899999999999999998875211 11111123333221
Q ss_pred HHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc----------cccccCCCCCCCCCCcEEE
Q 046742 122 IDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV----------DLEKLGIPPMNTNGSSKIV 191 (769)
Q Consensus 122 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~~~~~~~~~~~~ii 191 (769)
++.. .. .........+.+ +.. ..-+|++|+++... .++.+...+........+|
T Consensus 84 --~l~~----~~-------~g~~~~~~~~~~-~~a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vi 147 (261)
T TIGR02881 84 --DLVG----EY-------IGHTAQKTREVI-KKA--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLI 147 (261)
T ss_pred --Hhhh----hh-------ccchHHHHHHHH-Hhc--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEE
Confidence 1111 11 001111111112 221 23488999997521 2222222222223334555
Q ss_pred EeeccCCcc------ccc--cccceEEcCCCCHHHHHHHHHhhhCC
Q 046742 192 FTTRSAGGC------GLM--EAHRIFKVKCLEHKEAWELFQMKVGR 229 (769)
Q Consensus 192 vTtR~~~v~------~~~--~~~~~~~l~~l~~~~a~~l~~~~~~~ 229 (769)
+++...+.. ... +-...+++++++.++-.+++++.+..
T Consensus 148 la~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred ecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 555433220 001 11246899999999999999888754
No 115
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=0.0001 Score=76.64 Aligned_cols=197 Identities=15% Similarity=0.123 Sum_probs=119.3
Q ss_pred CCCCCCchHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHH
Q 046742 55 IPQTLGLESTFDEVWRCLGE----EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIA 130 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 130 (769)
.+..+||+.|+..+.+++.. +..+.+.|.|-+|.|||.+...++.+... ...--.++.+++..-.....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~-~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSK-SSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhh-hcccceeEEEeeccccchHHHHHHHH
Confidence 46779999999999999853 56778999999999999999999998721 11112457777766556667777777
Q ss_pred HHh--CCCCcccccccHHHHHHHHHHHHcc--CCEEEEEecccCcc-----cccccCCCCCCCCCCcEEEEeeccC--Cc
Q 046742 131 RKI--GLYDQSWKNKRLEIKAADIFKILSR--KKFVLLLDDIWNRV-----DLEKLGIPPMNTNGSSKIVFTTRSA--GG 199 (769)
Q Consensus 131 ~~l--~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~-----~~~~~~~~~~~~~~~~~iivTtR~~--~v 199 (769)
..+ ....+ . ...+....+.+...+ ..+|+|+|+++... .+-.+ ..++ .-.++++|+.---. +.
T Consensus 228 ~~~~q~~~s~---~-~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~l-Fewp-~lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 228 SSLLQDLVSP---G-TGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTL-FEWP-KLPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHhcCC---c-hhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeee-hhcc-cCCcceeeeeeehhhhhH
Confidence 666 11111 1 113444555555544 35899999987531 12211 1122 23455555432111 10
Q ss_pred ----ccc-----ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHH
Q 046742 200 ----CGL-----MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIG 260 (769)
Q Consensus 200 ----~~~-----~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 260 (769)
... .-....+..+|.+.++..++|+.+...... .......++.+++++.|.---+..+-
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t--~~~~~~Aie~~ArKvaa~SGDlRkaL 369 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST--SIFLNAAIELCARKVAAPSGDLRKAL 369 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc--cccchHHHHHHHHHhccCchhHHHHH
Confidence 111 113356788999999999999999865541 22233455566666655444443333
No 116
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=3.2e-05 Score=84.32 Aligned_cols=181 Identities=14% Similarity=0.122 Sum_probs=105.3
Q ss_pred CCCCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHhhccCCC--------------------CCCcEEEEE
Q 046742 56 PQTLGLESTFDEVWRCLGEEHV-GIIGLYGMGEVGKTTLLTRINNKFSNTP--------------------NGFDFVIWV 114 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~--------------------~~f~~~~wv 114 (769)
..++|.+..++.+.+++..++. +.+.++|+.|+||||+|+.++..+-... .+++ .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEe
Confidence 6779999999999999987665 4578999999999999999998762110 0111 1111
Q ss_pred EeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEE
Q 046742 115 VLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVF 192 (769)
Q Consensus 115 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iiv 192 (769)
........+ .++++.+.+. .....+++-++|+|+++... ..+.+...+.....+..+|+
T Consensus 96 ~g~~~~gid-~ir~i~~~l~------------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 96 DGASHRGIE-DIRQINETVL------------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred eccccCCHH-HHHHHHHHHH------------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEE
Confidence 111111111 1111111111 01123566789999987542 22222222222223555666
Q ss_pred eec-cCCcccc-ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchh-HHHHH
Q 046742 193 TTR-SAGGCGL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPL-ALITI 259 (769)
Q Consensus 193 TtR-~~~v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 259 (769)
+|. ...+... ......+++.+++.++....+.+.+...+.. -..+.++.+++.++|.+. |+..+
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~---i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE---TSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 553 3333222 2234678999999999999888776443211 225778899999999664 44444
No 117
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.18 E-value=7.6e-05 Score=71.81 Aligned_cols=182 Identities=18% Similarity=0.199 Sum_probs=109.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHH
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFK 154 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 154 (769)
++.+++.|+|.-|.|||.+++.+.... . + -+...-+-..+..+...+...++..+............++....+.+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~-~--~-d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASL-N--E-DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhc-C--C-CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 566799999999999999999666655 1 1 12222122233456778888888888763221122234444444544
Q ss_pred HH-ccCC-EEEEEecccCcc--cccccCCCC--C-CCCCCcEEEEeeccCCccc---------cccccce-EEcCCCCHH
Q 046742 155 IL-SRKK-FVLLLDDIWNRV--DLEKLGIPP--M-NTNGSSKIVFTTRSAGGCG---------LMEAHRI-FKVKCLEHK 217 (769)
Q Consensus 155 ~l-~~k~-~LlVlDdv~~~~--~~~~~~~~~--~-~~~~~~~iivTtR~~~v~~---------~~~~~~~-~~l~~l~~~ 217 (769)
.. ++++ ..++.||..+.. .++.++... . ++...-+|+..-. +++.. ....... |++.|++.+
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gq-p~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQ-PKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCC-cccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 44 3566 899999987642 222221111 1 1111112333221 11111 1112233 899999999
Q ss_pred HHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHH
Q 046742 218 EAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGR 261 (769)
Q Consensus 218 ~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 261 (769)
+...++...+.......+--..+....|+....|.|.+|+.++-
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999988886654333334467889999999999999988763
No 118
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.18 E-value=1.3e-05 Score=94.10 Aligned_cols=183 Identities=16% Similarity=0.148 Sum_probs=102.3
Q ss_pred CCCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCC--CC-CCcEEEE-EEeCccccHHHHHHHH
Q 046742 54 PIPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNT--PN-GFDFVIW-VVLSRDLQIDRLQENI 129 (769)
Q Consensus 54 ~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--~~-~f~~~~w-v~~~~~~~~~~~~~~i 129 (769)
..+++|||++++.+++..|......-+.++|++|+||||+|+.++++.... .. -.+..+| ++.+. +.
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------l~--- 255 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------LQ--- 255 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh------hh---
Confidence 346789999999999999987766677899999999999999999987210 10 0112222 22211 00
Q ss_pred HHHhCCCCcccccccHHHHHHHHHHHHc--cCCEEEEEecccCcc---------cccccCCCCCCCCCCcEEEEeeccCC
Q 046742 130 ARKIGLYDQSWKNKRLEIKAADIFKILS--RKKFVLLLDDIWNRV---------DLEKLGIPPMNTNGSSKIVFTTRSAG 198 (769)
Q Consensus 130 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~~~~~~~~~~~~~~iivTtR~~~ 198 (769)
-.. . ...+.++.+..+.+.+. +++.+|++|+++... +...+..+....+ .-++|-||...+
T Consensus 256 -----ag~-~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~IgaTT~~e 327 (852)
T TIGR03345 256 -----AGA-S-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIAATTWAE 327 (852)
T ss_pred -----ccc-c-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEEecCHHH
Confidence 000 0 11122223333333332 468999999986532 1111222221221 245555555432
Q ss_pred cc-------ccccccceEEcCCCCHHHHHHHHHhhhCCCcc-CCCCCHHHHHHHHHHHcCCch
Q 046742 199 GC-------GLMEAHRIFKVKCLEHKEAWELFQMKVGRETL-ESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 199 v~-------~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 253 (769)
.. ...+....+.+++++.+++.+++......... ..-.-..+....+++.+.+..
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 21 11123468999999999999997554422110 011122566677777776544
No 119
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.17 E-value=6.1e-06 Score=85.35 Aligned_cols=90 Identities=20% Similarity=0.242 Sum_probs=60.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc--cHHHHHHHHHHHhCCCCcccccccH------HHHH
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL--QIDRLQENIARKIGLYDQSWKNKRL------EIKA 149 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~------~~~~ 149 (769)
....|+|++|+||||||+++++... ..+|+.++||.+.+.. ...++++++...+-. ...+.... ....
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~--st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVA--STFDEPAERHVQVAEMVI 245 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEE--ECCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999983 3489999999988876 778888888621110 11111111 1111
Q ss_pred HHHHHH-HccCCEEEEEecccCc
Q 046742 150 ADIFKI-LSRKKFVLLLDDIWNR 171 (769)
Q Consensus 150 ~~l~~~-l~~k~~LlVlDdv~~~ 171 (769)
+..... -.+++++|++|++...
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHHH
Confidence 111221 2579999999998643
No 120
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=3.9e-05 Score=86.91 Aligned_cols=192 Identities=13% Similarity=0.094 Sum_probs=107.6
Q ss_pred CCCCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhC
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIG 134 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 134 (769)
..+||.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++.+ .-..... .....+.....+.+.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l-~c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV-NCTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh-cCCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 67799999999999999876544 56799999999999999999886 1111000 0001111222233322111
Q ss_pred CCC---cccccccHHHHHHHHHHHH-----ccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeecc-CCcccc-
Q 046742 135 LYD---QSWKNKRLEIKAADIFKIL-----SRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTRS-AGGCGL- 202 (769)
Q Consensus 135 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR~-~~v~~~- 202 (769)
... +.......++.. .+.+.+ .+++-++|+|+++... ..+.+...+.....++.+|+++.+ ..+...
T Consensus 89 ~d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 89 VDVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CeEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 100 000011122211 111211 2456699999997542 233332222222335566665543 222221
Q ss_pred ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHH
Q 046742 203 MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALIT 258 (769)
Q Consensus 203 ~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 258 (769)
......+++.+++.++....+.+.+...+.. -..+.++.+++.++|.+..+..
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~---i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGIN---LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 1223578899999999999888877544311 1257788999999998864433
No 121
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.5e-07 Score=91.18 Aligned_cols=85 Identities=26% Similarity=0.305 Sum_probs=57.9
Q ss_pred CcceEEEecCCCCCc--cccccccCCcCCCEEeccCCCCc-ccchhhhcCCCCcEEecCCCcCcCccCc-ccccCCcccc
Q 046742 438 PSLKVLNLSNNQSLK--QLPSGISRLVSLQHLNLSLTNIK-ELPEELKALVNLKCLNLDYTKSLCRIPR-HLISNFSMLY 513 (769)
Q Consensus 438 ~~L~~L~L~~~~~~~--~lp~~i~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~ 513 (769)
..|++||||+. .++ .+..-+..+.+|+.|.+.++.+. .+-..+.+=.+|+.|+++.|..++.... -.+++++.|+
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 35888888877 332 23344567788888888888777 4666677778888888888765554322 2356677777
Q ss_pred eeeeeccccc
Q 046742 514 ILRIVDCHYF 523 (769)
Q Consensus 514 ~L~l~~~~~~ 523 (769)
.|+++.|...
T Consensus 264 ~LNlsWc~l~ 273 (419)
T KOG2120|consen 264 ELNLSWCFLF 273 (419)
T ss_pred hcCchHhhcc
Confidence 7777776544
No 122
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.15 E-value=2.3e-05 Score=85.39 Aligned_cols=184 Identities=13% Similarity=0.098 Sum_probs=110.3
Q ss_pred CCchHH--HHHHHHHhccC--CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhC
Q 046742 59 LGLEST--FDEVWRCLGEE--HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIG 134 (769)
Q Consensus 59 vGr~~~--~~~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 134 (769)
+|.... ......+...+ ....+.|+|..|+|||.|++.+++.... ...-..++++ +.+++...+...++
T Consensus 119 ~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv------~~~~f~~~~~~~l~ 191 (450)
T PRK14087 119 IGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYM------SGDEFARKAVDILQ 191 (450)
T ss_pred CCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEE------EHHHHHHHHHHHHH
Confidence 576443 33334443332 2346889999999999999999997621 1112234555 45567777776654
Q ss_pred CCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc---c-ccccCCCCCC-CCCCcEEEEeeccCC---------cc
Q 046742 135 LYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV---D-LEKLGIPPMN-TNGSSKIVFTTRSAG---------GC 200 (769)
Q Consensus 135 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~-~~~~~~~~~~-~~~~~~iivTtR~~~---------v~ 200 (769)
.. ......+++.++. .-+||+||+.... . .+.+...+.. ...|..||+|+.... +.
T Consensus 192 ~~---------~~~~~~~~~~~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~ 261 (450)
T PRK14087 192 KT---------HKEIEQFKNEICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLI 261 (450)
T ss_pred Hh---------hhHHHHHHHHhcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHH
Confidence 21 0123344444443 3478899996432 1 1222211211 123446888876431 12
Q ss_pred ccccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHH
Q 046742 201 GLMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIG 260 (769)
Q Consensus 201 ~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 260 (769)
.++...-.+.+++++.++-.+++++.+...... ..-.++..+.|++.+.|.|-.+.-+.
T Consensus 262 SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 262 TRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHhCCceeccCCcCHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 233345678899999999999999988543311 12336888999999999998776554
No 123
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.14 E-value=3.7e-05 Score=76.89 Aligned_cols=197 Identities=19% Similarity=0.219 Sum_probs=118.0
Q ss_pred CCCCCchH---HHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHhhccCCCC---CCcEEEEEEeCccccHHHHH
Q 046742 56 PQTLGLES---TFDEVWRCLGE---EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPN---GFDFVIWVVLSRDLQIDRLQ 126 (769)
Q Consensus 56 ~~~vGr~~---~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~---~f~~~~wv~~~~~~~~~~~~ 126 (769)
+..||-.. .+++|.+.+.. .+.+-+.|+|.+|.|||++++++...+....+ .--.++.|.....++...++
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 44565432 34455555543 35667999999999999999999987732111 11257788888999999999
Q ss_pred HHHHHHhCCCCcccccccHHHHHHHHHHHHcc-CCEEEEEecccCcc--------c-ccccCCCCCCCCCCcEEEEeecc
Q 046742 127 ENIARKIGLYDQSWKNKRLEIKAADIFKILSR-KKFVLLLDDIWNRV--------D-LEKLGIPPMNTNGSSKIVFTTRS 196 (769)
Q Consensus 127 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~--------~-~~~~~~~~~~~~~~~~iivTtR~ 196 (769)
..|+.+++.+.. ...........+.+.++. +.-+||+|++.+.- + +..+ -.+...-.=+-|.+-|+.
T Consensus 114 ~~IL~~lgaP~~--~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 114 SAILEALGAPYR--PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHhCcccC--CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH-HHHhhccCCCeEEeccHH
Confidence 999999998764 233444445555555654 44599999997631 1 1111 111122222344454543
Q ss_pred C--------CccccccccceEEcCCCCH-HHHHHHHHhh---hCCCccCCCCCHHHHHHHHHHHcCCchhHHHHH
Q 046742 197 A--------GGCGLMEAHRIFKVKCLEH-KEAWELFQMK---VGRETLESHLQIPELAEIVAKECDGLPLALITI 259 (769)
Q Consensus 197 ~--------~v~~~~~~~~~~~l~~l~~-~~a~~l~~~~---~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 259 (769)
. +++. ...++.++.... ++...|+... +.-.. ...-...++++.|...++|+.--+..+
T Consensus 191 A~~al~~D~QLa~---RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 191 AYRALRTDPQLAS---RFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHHhccCHHHHh---ccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 2 2222 234566666654 3445554332 22111 233455789999999999998655444
No 124
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.13 E-value=1.8e-05 Score=79.97 Aligned_cols=165 Identities=18% Similarity=0.174 Sum_probs=106.4
Q ss_pred CCCCCchHHHHHHHHHhccCC---ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGEEH---VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARK 132 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~---~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 132 (769)
+.+-+|+.++..+..++.+.. +..|.|+|.+|.|||.+++++.+.. .. ..+|+++-+.++...++..|+.+
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n~-----~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-NL-----ENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-CC-----cceeeehHHhccHHHHHHHHHHH
Confidence 567799999999999997643 3456899999999999999999987 22 25899999999999999999999
Q ss_pred hCCCCc-cc-ccc---cHHHHHHHHHH--HHc--cCCEEEEEecccCcccccccCCC----CC--CCCCCcEEEEeeccC
Q 046742 133 IGLYDQ-SW-KNK---RLEIKAADIFK--ILS--RKKFVLLLDDIWNRVDLEKLGIP----PM--NTNGSSKIVFTTRSA 197 (769)
Q Consensus 133 l~~~~~-~~-~~~---~~~~~~~~l~~--~l~--~k~~LlVlDdv~~~~~~~~~~~~----~~--~~~~~~~iivTtR~~ 197 (769)
.+..+. +. ... ........+.+ ... ++.++||||+++...|.+....+ +. -..+...|+...-..
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~ 159 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSC 159 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecccc
Confidence 863332 11 111 11222223333 222 35899999999887665544211 00 111233333322211
Q ss_pred --Cccccccc--cceEEcCCCCHHHHHHHHHhh
Q 046742 198 --GGCGLMEA--HRIFKVKCLEHKEAWELFQMK 226 (769)
Q Consensus 198 --~v~~~~~~--~~~~~l~~l~~~~a~~l~~~~ 226 (769)
.....++. ..++..+..+.+|..+++.+-
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 11211222 345688999999999998654
No 125
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=4.9e-05 Score=85.83 Aligned_cols=177 Identities=12% Similarity=0.148 Sum_probs=106.8
Q ss_pred CCCCCchHHHHHHHHHhccCCccE-EEEEcCCCCcHHHHHHHHHhhccC--------------------CCCCCcEEEEE
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGI-IGLYGMGEVGKTTLLTRINNKFSN--------------------TPNGFDFVIWV 114 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~v-v~I~G~gGiGKTtLa~~~~~~~~~--------------------~~~~f~~~~wv 114 (769)
..+||.+..++.|.+++..+.... +.++|+.|+||||+|+.++..+.- ...+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 567999999999999998776554 779999999999999999887610 0112331 222
Q ss_pred EeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEE
Q 046742 115 VLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVF 192 (769)
Q Consensus 115 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iiv 192 (769)
+.......+ .++++++++.... ..+++-++|+|+++... ..+.+...+..-..++.+|+
T Consensus 96 d~~~~~~vd-~Ir~li~~~~~~P------------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 96 DAASNNSVD-DIRNLIEQVRIPP------------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred cccccCCHH-HHHHHHHHHhhCc------------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 222111111 1222222221110 12455688999987653 23333222322233555555
Q ss_pred ee-ccCCcccc-ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhH
Q 046742 193 TT-RSAGGCGL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLA 255 (769)
Q Consensus 193 Tt-R~~~v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 255 (769)
+| +...+... ......+++.+++.++....+.+.+...+.. ...+.++.|++.++|-.--
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~---i~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT---AEPEALNVIAQKADGGMRD 218 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHH
Confidence 44 44444332 2345679999999999999998877544321 1246788999999996653
No 126
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.12 E-value=2.6e-05 Score=82.07 Aligned_cols=147 Identities=15% Similarity=0.139 Sum_probs=84.4
Q ss_pred CCCCCCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHH
Q 046742 54 PIPQTLGLESTFDEVWRCLGEEHV-GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARK 132 (769)
Q Consensus 54 ~~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 132 (769)
....++|.++..+++..++..+.. +++.++|++|+|||++|+.+++.. ... ...++.+. .....+...+...
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~~ 91 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTRF 91 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHHH
Confidence 346779999999999999987654 466669999999999999999876 222 23344433 1211111111111
Q ss_pred hCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc--c-ccccCCCCCCCCCCcEEEEeeccCCcc-cc-ccccc
Q 046742 133 IGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV--D-LEKLGIPPMNTNGSSKIVFTTRSAGGC-GL-MEAHR 207 (769)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~-~~~~~~~~~~~~~~~~iivTtR~~~v~-~~-~~~~~ 207 (769)
... ..+.+.+-++|+||++... + ...+...+.....++++|+||...... .. .+...
T Consensus 92 ~~~------------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 92 AST------------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHh------------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 000 0011345689999997541 1 122221122234567888888654311 11 12234
Q ss_pred eEEcCCCCHHHHHHHHHh
Q 046742 208 IFKVKCLEHKEAWELFQM 225 (769)
Q Consensus 208 ~~~l~~l~~~~a~~l~~~ 225 (769)
.+.++..+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 677778888887766544
No 127
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.11 E-value=1.3e-05 Score=93.56 Aligned_cols=158 Identities=16% Similarity=0.202 Sum_probs=91.7
Q ss_pred CCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccC--CCCCC-cEEEEEEeCccccHHHHHHHHHH
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSN--TPNGF-DFVIWVVLSRDLQIDRLQENIAR 131 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~--~~~~f-~~~~wv~~~~~~~~~~~~~~i~~ 131 (769)
.++++||+++++++++.|......-+.++|++|+|||++|+.++++... +...+ +..+|. + +...+..
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a---- 251 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLA---- 251 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhh----
Confidence 3578999999999999997766667789999999999999999998721 11111 233332 1 1111111
Q ss_pred HhCCCCcccccccHHHHHHHHHHHHc-cCCEEEEEecccCcc----------cccccCCCCCCCCCCcEEEEeeccCCcc
Q 046742 132 KIGLYDQSWKNKRLEIKAADIFKILS-RKKFVLLLDDIWNRV----------DLEKLGIPPMNTNGSSKIVFTTRSAGGC 200 (769)
Q Consensus 132 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~----------~~~~~~~~~~~~~~~~~iivTtR~~~v~ 200 (769)
... ...+.++.+..+.+.+. .++.+|++|+++... +...+..+....+ .-++|-+|...+..
T Consensus 252 ~~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaTt~~e~~ 324 (731)
T TIGR02639 252 GTK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGSTTYEEYK 324 (731)
T ss_pred hcc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEecCHHHHH
Confidence 000 11233344444444443 467899999987431 1122211111111 23444444432210
Q ss_pred -------ccccccceEEcCCCCHHHHHHHHHhhhC
Q 046742 201 -------GLMEAHRIFKVKCLEHKEAWELFQMKVG 228 (769)
Q Consensus 201 -------~~~~~~~~~~l~~l~~~~a~~l~~~~~~ 228 (769)
...+....+++++++.++..+++++...
T Consensus 325 ~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 325 NHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred HHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHH
Confidence 0112345799999999999999987553
No 128
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=6.2e-05 Score=85.05 Aligned_cols=195 Identities=14% Similarity=0.068 Sum_probs=106.9
Q ss_pred CCCCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhC
Q 046742 56 PQTLGLESTFDEVWRCLGEEHV-GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIG 134 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 134 (769)
..++|.+..++.|..++..++. +.+.++|+.|+||||+|+.++..+- -..... .. ......-...+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~-c~~~~~-~~----~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN-CLNSDK-PT----PEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc-CCCcCC-CC----CCCCcccHHHHHHhcCCC
Confidence 5679999999999999987653 5778999999999999999999872 111100 00 001111122222221111
Q ss_pred CCC---cccccccHHHHHHHHHHH----HccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeeccC-Ccccc-c
Q 046742 135 LYD---QSWKNKRLEIKAADIFKI----LSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTRSA-GGCGL-M 203 (769)
Q Consensus 135 ~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR~~-~v~~~-~ 203 (769)
... ........++..+.+... ..+++-++|+|+++... ....+...+..-.....+|++|.+. .+... .
T Consensus 90 ~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred ccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH
Confidence 000 000111122222222111 12455689999998542 2333322222222344555554433 23221 1
Q ss_pred cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHH
Q 046742 204 EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITI 259 (769)
Q Consensus 204 ~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 259 (769)
.....+++..++.++....+.+.+...... -..+.+..|++.++|.+..+..+
T Consensus 170 SRc~~~~f~~l~~~ei~~~L~~ia~kegi~---is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 170 SRCQRFDFRRIPLEAMVQHLSEIAEKESIE---IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 234578889999999988888776543311 12467889999999987654433
No 129
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.11 E-value=5.6e-05 Score=80.75 Aligned_cols=170 Identities=15% Similarity=0.159 Sum_probs=95.9
Q ss_pred CCCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 57 QTLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
.+.|.+..+++|.+.+.- ...+.|.++|++|+|||++|+.+++.. ...| +.+. . .
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f---i~i~--~----s 213 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF---IRVV--G----S 213 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEe--h----H
Confidence 346888889888877631 245678899999999999999999986 2333 2221 1 1
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc------------c----ccccCCCCC--CCC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV------------D----LEKLGIPPM--NTN 185 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~~~~~~~--~~~ 185 (769)
.+ .... ...........+.......+.+|+||+++... . +..+...+. ...
T Consensus 214 ~l----~~k~-------~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 214 EF----VQKY-------LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred HH----HHHh-------cchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 11 1111 01111112222222334578999999986421 0 111111111 122
Q ss_pred CCcEEEEeeccCCccc-----cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 186 GSSKIVFTTRSAGGCG-----LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 186 ~~~~iivTtR~~~v~~-----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
.+..||+||...+... ..+-...++++..+.++..++|+..........+.+ ...+++.+.|+-
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 4567788877554321 112345689999999998889887765433222222 445566666554
No 130
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=6.6e-05 Score=82.42 Aligned_cols=181 Identities=13% Similarity=0.102 Sum_probs=103.8
Q ss_pred CCCCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhccCC-CCC-----------------CcEEEEEEe
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFSNT-PNG-----------------FDFVIWVVL 116 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~-~~~-----------------f~~~~wv~~ 116 (769)
..++|.+..++.+.+++..+... ...++|+.|+||||+|+.++...... ... +...++++.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 56799999999999999876554 45689999999999999999876110 000 111122211
Q ss_pred CccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHH-HHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEe
Q 046742 117 SRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFK-ILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFT 193 (769)
Q Consensus 117 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivT 193 (769)
+.....+ +...+.+.+.. -..+++-++|+|+++... ..+.+...+.....+..+|++
T Consensus 96 as~~gvd--------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~ 155 (486)
T PRK14953 96 ASNRGID--------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILC 155 (486)
T ss_pred ccCCCHH--------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 1111111 11111111111 123566799999997542 233332222222234455554
Q ss_pred e-ccCCcccc-ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHH
Q 046742 194 T-RSAGGCGL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITI 259 (769)
Q Consensus 194 t-R~~~v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 259 (769)
| +...+... ......+.+.+++.++....+.+.+...... ...+.++.+++.++|.+..+...
T Consensus 156 tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~---id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 156 TTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE---YEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred ECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 4 33333221 1234578999999999999888876543311 12567788999999977544333
No 131
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.08 E-value=2.9e-05 Score=82.26 Aligned_cols=69 Identities=19% Similarity=0.156 Sum_probs=57.0
Q ss_pred CCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQE 127 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 127 (769)
..+++.++.++.+...|... +.|.++|++|+|||++|+.+++.. .....++.+.||.++...+..+++.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhc
Confidence 45688899999999988753 567789999999999999999988 3345678899999998877776664
No 132
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.08 E-value=4.5e-05 Score=83.08 Aligned_cols=176 Identities=18% Similarity=0.179 Sum_probs=103.5
Q ss_pred CCchHHH--HHHHHHhccC-CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCC-cEEEEEEeCccccHHHHHHHHHHHhC
Q 046742 59 LGLESTF--DEVWRCLGEE-HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGF-DFVIWVVLSRDLQIDRLQENIARKIG 134 (769)
Q Consensus 59 vGr~~~~--~~l~~~L~~~-~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~ 134 (769)
+|-.... ....++...+ ....+.|+|++|+|||.|++.+++... +... ..++|++ .+++..++...+.
T Consensus 109 ~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~------~~~f~~~~~~~~~ 180 (440)
T PRK14088 109 VGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYIT------SEKFLNDLVDSMK 180 (440)
T ss_pred cCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEE------HHHHHHHHHHHHh
Confidence 4754433 3344444333 234689999999999999999999872 1222 2466764 3456666666553
Q ss_pred CCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc---c-cccCCCCCC-CCCCcEEEEeeccC-C--------cc
Q 046742 135 LYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD---L-EKLGIPPMN-TNGSSKIVFTTRSA-G--------GC 200 (769)
Q Consensus 135 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~-~~~~~~~~~-~~~~~~iivTtR~~-~--------v~ 200 (769)
.. .. ..+.+.++.+.-+|++||++.... . +++...+.. ...|..||+||... . +.
T Consensus 181 ~~-------~~----~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~ 249 (440)
T PRK14088 181 EG-------KL----NEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLV 249 (440)
T ss_pred cc-------cH----HHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHh
Confidence 21 11 223334444456899999974311 1 122111111 11244688887532 1 12
Q ss_pred ccccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHH
Q 046742 201 GLMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLAL 256 (769)
Q Consensus 201 ~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 256 (769)
..+.....+++++.+.+.-.+++++.+...... -.++..+.|++.+.|.--.+
T Consensus 250 SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~---l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 250 SRFQMGLVAKLEPPDEETRKKIARKMLEIEHGE---LPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred hHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHhccccCHHHH
Confidence 223344578999999999999999887543322 23678888999888765433
No 133
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.07 E-value=1.2e-05 Score=83.61 Aligned_cols=91 Identities=19% Similarity=0.225 Sum_probs=61.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc--ccHHHHHHHHHHHh-----CCCCccccccc-HHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD--LQIDRLQENIARKI-----GLYDQSWKNKR-LEIK 148 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l-----~~~~~~~~~~~-~~~~ 148 (769)
-..++|+|++|+|||||++.+++.+. ..+|+..+|+.+.+. .++.++++.+...+ +.+.. .... ....
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~--~~~~va~~v 243 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAS--RHVQVAEMV 243 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChH--HHHHHHHHH
Confidence 34688999999999999999999983 347999999998866 68999999985432 22110 1011 1111
Q ss_pred HHHHHHH-HccCCEEEEEecccCc
Q 046742 149 AADIFKI-LSRKKFVLLLDDIWNR 171 (769)
Q Consensus 149 ~~~l~~~-l~~k~~LlVlDdv~~~ 171 (769)
.+..... -++++++|++|++...
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHH
Confidence 2222222 2579999999999653
No 134
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.04 E-value=5.9e-05 Score=82.03 Aligned_cols=177 Identities=19% Similarity=0.173 Sum_probs=101.8
Q ss_pred CCchHHH--HHHHHHhccC--CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhC
Q 046742 59 LGLESTF--DEVWRCLGEE--HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIG 134 (769)
Q Consensus 59 vGr~~~~--~~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 134 (769)
+|.+... ..+.++.... ....+.|+|+.|+|||.|++.+++... ....-..+++++ ..++..++...+.
T Consensus 114 ~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~------~~~~~~~~~~~~~ 186 (405)
T TIGR00362 114 VGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVS------SEKFTNDFVNALR 186 (405)
T ss_pred cCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEE------HHHHHHHHHHHHH
Confidence 5765542 2233333332 234688999999999999999999873 111112456663 3444555555543
Q ss_pred CCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc---c-cccCCCCCC-CCCCcEEEEeeccCC---------cc
Q 046742 135 LYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD---L-EKLGIPPMN-TNGSSKIVFTTRSAG---------GC 200 (769)
Q Consensus 135 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~-~~~~~~~~~-~~~~~~iivTtR~~~---------v~ 200 (769)
.. . ...+.+.+++ .-+|||||++.... . +.+...+.. ...+..+|+|+.... +.
T Consensus 187 ~~-------~----~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~ 254 (405)
T TIGR00362 187 NN-------K----MEEFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLR 254 (405)
T ss_pred cC-------C----HHHHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhh
Confidence 11 1 1223333433 23888999975321 1 111111110 113456788776421 22
Q ss_pred ccccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHH
Q 046742 201 GLMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALI 257 (769)
Q Consensus 201 ~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 257 (769)
..+.....+++++.+.++-.+++.+.+....... .++..+.|++.+.|..-.+.
T Consensus 255 SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l---~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 255 SRFEWGLVVDIEPPDLETRLAILQKKAEEEGLEL---PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred hhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHH
Confidence 2333345789999999999999999886543222 26788889998888766443
No 135
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.03 E-value=3.6e-05 Score=78.78 Aligned_cols=154 Identities=12% Similarity=0.046 Sum_probs=80.2
Q ss_pred CCCCchHHHHHHHHHhc---------c------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcccc
Q 046742 57 QTLGLESTFDEVWRCLG---------E------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQ 121 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~---------~------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 121 (769)
.++|-++.+++|.++.. . .....+.++|++|+|||++|+.++..... .+.....-|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH---
Confidence 45787777777655431 0 11225789999999999999888776621 12111112443332
Q ss_pred HHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCc-----------ccccccCCCCCCCCCCcEE
Q 046742 122 IDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNR-----------VDLEKLGIPPMNTNGSSKI 190 (769)
Q Consensus 122 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~~~~~~~~~~~~i 190 (769)
.++. ..+.. .........+.+ . ..-+|+||+++.. +..+.+...+.....+.+|
T Consensus 99 -~~l~----~~~~g-------~~~~~~~~~~~~-a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~v 163 (284)
T TIGR02880 99 -DDLV----GQYIG-------HTAPKTKEILKR-A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVV 163 (284)
T ss_pred -HHHh----Hhhcc-------cchHHHHHHHHH-c--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEE
Confidence 1222 11111 011111122222 2 2358899999632 1112222222233345566
Q ss_pred EEeeccCCcccc--c------cccceEEcCCCCHHHHHHHHHhhhCC
Q 046742 191 VFTTRSAGGCGL--M------EAHRIFKVKCLEHKEAWELFQMKVGR 229 (769)
Q Consensus 191 ivTtR~~~v~~~--~------~~~~~~~l~~l~~~~a~~l~~~~~~~ 229 (769)
|+++.....-.. . +-...+++++++.+|..+++...+..
T Consensus 164 I~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 164 ILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred EEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 666543211000 0 11357899999999999999887654
No 136
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.02 E-value=3.7e-07 Score=98.53 Aligned_cols=126 Identities=28% Similarity=0.410 Sum_probs=76.4
Q ss_pred CCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCCCCcccchh-hhcCCCCcEEec
Q 046742 414 PSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNIKELPEE-LKALVNLKCLNL 492 (769)
Q Consensus 414 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l 492 (769)
..|.+.+.++|.+.-+..+ +.-++.|+.|||+.| .+.+.. .+..|.+|++|||++|.+..+|.- ...+ +|+.|++
T Consensus 164 n~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDES-LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHHhHHHH-HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeee
Confidence 3455556666666555433 666777788888877 444443 666777777888888777777653 2223 3777777
Q ss_pred CCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEecc
Q 046742 493 DYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTS 551 (769)
Q Consensus 493 ~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 551 (769)
++|. ++.+-. +.+|.+|+.||+++|-+.+.- .+.-|..|..|+.|++..+.
T Consensus 240 rnN~-l~tL~g--ie~LksL~~LDlsyNll~~hs-----eL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 240 RNNA-LTTLRG--IENLKSLYGLDLSYNLLSEHS-----ELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred cccH-HHhhhh--HHhhhhhhccchhHhhhhcch-----hhhHHHHHHHHHHHhhcCCc
Confidence 7775 555544 677777777777776543321 12234444555555555443
No 137
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=5.8e-05 Score=85.03 Aligned_cols=196 Identities=12% Similarity=0.107 Sum_probs=105.9
Q ss_pred CCCCCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHh
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKI 133 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 133 (769)
-..+||.+..+..|.+++..++.+ .+.++|+.|+||||+|+.++..+ .-.+..+. ...+.-...+.|...-
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l-~c~~~~~~-------~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKAL-NCEQGLTA-------EPCNVCPPCVEITEGR 86 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh-cCCCCCCC-------CCCCccHHHHHHhcCC
Confidence 367799999999999999877654 46799999999999999999886 11111000 0000000111110000
Q ss_pred C-----CCCc-ccccccHHHHHHHHHH-HHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEee-ccCCcccc-
Q 046742 134 G-----LYDQ-SWKNKRLEIKAADIFK-ILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTT-RSAGGCGL- 202 (769)
Q Consensus 134 ~-----~~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTt-R~~~v~~~- 202 (769)
. +... .....+..++.+.+.. -..++.-++|+|+++... ....+...+..-..++.+|++| ....+...
T Consensus 87 ~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 87 SVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 0 0000 0001111111111110 112455689999997542 2333322222222355555544 43434322
Q ss_pred ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch-hHHHHHHH
Q 046742 203 MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP-LALITIGR 261 (769)
Q Consensus 203 ~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~ 261 (769)
......+++.+++.++....+...+...+.. -..+.++.|++.++|.. .++..+-.
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~---i~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGIS---ISDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2234578999999999998888776544311 12577888999999865 45555433
No 138
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.00013 Score=81.59 Aligned_cols=190 Identities=13% Similarity=0.050 Sum_probs=105.8
Q ss_pred CCCCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhC
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIG 134 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 134 (769)
..+||.+..+++|..++..+..+ .+.++|+.|+||||+|+.+++.+ .-...... ..+. .-...+.+...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L-~c~~~~~~---~pC~----~C~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCL-NCVNGPTP---MPCG----ECSSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh-ccccCCCC---CCCc----cchHHHHHHcCCC
Confidence 56799999999999999876554 57799999999999999999986 21111000 0000 0000011110000
Q ss_pred CC---CcccccccHHHHHHH---HHH-HHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeecc-CCcccc-c
Q 046742 135 LY---DQSWKNKRLEIKAAD---IFK-ILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTRS-AGGCGL-M 203 (769)
Q Consensus 135 ~~---~~~~~~~~~~~~~~~---l~~-~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR~-~~v~~~-~ 203 (769)
.. .+.......+..... +.. -..+++-++|+|+++... .++.+...+......+.+|++|.. ..+... .
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~ 167 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIK 167 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHH
Confidence 00 000001112222211 111 123566789999997553 334443333333345566655543 233221 1
Q ss_pred cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHH
Q 046742 204 EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLAL 256 (769)
Q Consensus 204 ~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 256 (769)
.....++..+++.++..+.+.+.+..... .-..+.++.|++.++|.+..+
T Consensus 168 SRc~~~~f~~l~~~el~~~L~~i~~~egi---~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 168 SRCQHFNFRLLSLEKIYNMLKKVCLEDQI---KYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HhceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 23456899999999999998887644331 122677888999999987544
No 139
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.01 E-value=3.7e-07 Score=92.64 Aligned_cols=85 Identities=21% Similarity=0.251 Sum_probs=35.6
Q ss_pred CCCCCccEEEccCCC-Ccccc-hhhhcCCCcceEEEecCCCCCcccc--ccccCCcCCCEEeccCC-CCcc--cchhhhc
Q 046742 411 PSCPSLITLFLNNNN-LKVIT-DGFFQFMPSLKVLNLSNNQSLKQLP--SGISRLVSLQHLNLSLT-NIKE--LPEELKA 483 (769)
Q Consensus 411 ~~~~~L~~L~l~~~~-~~~~~-~~~~~~l~~L~~L~L~~~~~~~~lp--~~i~~l~~L~~L~l~~~-~l~~--lp~~~~~ 483 (769)
..|+++..|.+.+|. ++... ..+-..+++|++|+|..|..++..- .....+++|.+|++++| .|+. +-.-...
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 345555555555552 11111 1112345555555555553333311 12233555555555555 2321 2222333
Q ss_pred CCCCcEEecCCC
Q 046742 484 LVNLKCLNLDYT 495 (769)
Q Consensus 484 l~~L~~L~l~~~ 495 (769)
+.+++.+.+++|
T Consensus 241 ~~~l~~~~~kGC 252 (483)
T KOG4341|consen 241 CKELEKLSLKGC 252 (483)
T ss_pred chhhhhhhhccc
Confidence 444444444444
No 140
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.01 E-value=5.2e-05 Score=81.53 Aligned_cols=169 Identities=17% Similarity=0.168 Sum_probs=94.3
Q ss_pred CCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHH
Q 046742 58 TLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDR 124 (769)
Q Consensus 58 ~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 124 (769)
+.|.+..+++|.+.+.- ...+.|.++|++|+|||++|+.+++.. ...| +.+... .
T Consensus 185 IgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f-----i~V~~s----e 252 (438)
T PTZ00361 185 IGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF-----LRVVGS----E 252 (438)
T ss_pred hcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE-----EEEecc----h
Confidence 36899999998887731 234568899999999999999999987 3333 222111 1
Q ss_pred HHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc----------------ccccCCCCC--CCCC
Q 046742 125 LQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD----------------LEKLGIPPM--NTNG 186 (769)
Q Consensus 125 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~~~--~~~~ 186 (769)
+.. .. ...........+.......+.+|+||+++.... +..+...+. ....
T Consensus 253 L~~----k~-------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 253 LIQ----KY-------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred hhh----hh-------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 111 11 111111122222223345678999999864210 001111111 1123
Q ss_pred CcEEEEeeccCCccc-----cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 187 SSKIVFTTRSAGGCG-----LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 187 ~~~iivTtR~~~v~~-----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
+.+||+||...+... ...-...++++..+.++..++|...+.......... ...++..+.|+-
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvd----l~~la~~t~g~s 389 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVD----LEEFIMAKDELS 389 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcC----HHHHHHhcCCCC
Confidence 567887877544322 113356789999999999999998765433222222 344455554443
No 141
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.99 E-value=6.9e-05 Score=82.53 Aligned_cols=199 Identities=18% Similarity=0.119 Sum_probs=111.6
Q ss_pred CCchHH--HHHHHHHhccC--CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhC
Q 046742 59 LGLEST--FDEVWRCLGEE--HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIG 134 (769)
Q Consensus 59 vGr~~~--~~~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 134 (769)
+|.... .....++...+ ....+.|+|+.|+|||+|++.+++... ....-..+++++ ..++..++...+.
T Consensus 126 ~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~------~~~~~~~~~~~~~ 198 (450)
T PRK00149 126 VGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVT------SEKFTNDFVNALR 198 (450)
T ss_pred cCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEE------HHHHHHHHHHHHH
Confidence 465443 33444444332 235688999999999999999999872 111123455663 3344444554442
Q ss_pred CCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc----ccccCCCCCC-CCCCcEEEEeeccCC---------cc
Q 046742 135 LYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD----LEKLGIPPMN-TNGSSKIVFTTRSAG---------GC 200 (769)
Q Consensus 135 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~~~~~~-~~~~~~iivTtR~~~---------v~ 200 (769)
.. . ...+.+.++. .-+|||||++.... .+.+...+.. ...|..||+|+.... +.
T Consensus 199 ~~-------~----~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~ 266 (450)
T PRK00149 199 NN-------T----MEEFKEKYRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLR 266 (450)
T ss_pred cC-------c----HHHHHHHHhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 11 1 1233344442 44899999964311 1122111110 112445788776532 12
Q ss_pred ccccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHH----HHHHH---hcCCCChhHHH
Q 046742 201 GLMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALI----TIGRA---MAFKKTPQEWK 273 (769)
Q Consensus 201 ~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~----~~~~~---l~~~~~~~~w~ 273 (769)
..+.....+++++.+.++-.+++++.+..... .-..+..+.|++.+.|..-.+. .+..+ ....-+.+..+
T Consensus 267 SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~---~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~ 343 (450)
T PRK00149 267 SRFEWGLTVDIEPPDLETRIAILKKKAEEEGI---DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAK 343 (450)
T ss_pred hHhcCCeeEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHH
Confidence 23334457899999999999999998754321 1236788999999988776433 22221 11223555556
Q ss_pred HHHHHH
Q 046742 274 DAIQVL 279 (769)
Q Consensus 274 ~~l~~l 279 (769)
++++.+
T Consensus 344 ~~l~~~ 349 (450)
T PRK00149 344 EALKDL 349 (450)
T ss_pred HHHHHh
Confidence 665543
No 142
>CHL00181 cbbX CbbX; Provisional
Probab=97.99 E-value=5.6e-05 Score=77.27 Aligned_cols=154 Identities=14% Similarity=0.106 Sum_probs=81.2
Q ss_pred CCCCchHHHHHHHHHhc--------c-------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcccc
Q 046742 57 QTLGLESTFDEVWRCLG--------E-------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQ 121 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~--------~-------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 121 (769)
.++|-+..+++|.++.. . .....+.++|++|+||||+|+.+++.... .+.-...-|+.++..
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~~~-- 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVTRD-- 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEecHH--
Confidence 46787777776554431 0 12234789999999999999999887521 111111124444422
Q ss_pred HHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCc-----------ccccccCCCCCCCCCCcEE
Q 046742 122 IDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNR-----------VDLEKLGIPPMNTNGSSKI 190 (769)
Q Consensus 122 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~~~~~~~~~~~~i 190 (769)
++.... .+. . .... ..+.+.. ..-+|+||+++.. +..+.+...+.....+.+|
T Consensus 101 --~l~~~~---~g~-----~---~~~~-~~~l~~a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~v 164 (287)
T CHL00181 101 --DLVGQY---IGH-----T---APKT-KEVLKKA--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVV 164 (287)
T ss_pred --HHHHHH---hcc-----c---hHHH-HHHHHHc--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEE
Confidence 222211 111 0 1111 1122222 2349999999642 1112222222233345667
Q ss_pred EEeeccCCccc--------cccccceEEcCCCCHHHHHHHHHhhhCC
Q 046742 191 VFTTRSAGGCG--------LMEAHRIFKVKCLEHKEAWELFQMKVGR 229 (769)
Q Consensus 191 ivTtR~~~v~~--------~~~~~~~~~l~~l~~~~a~~l~~~~~~~ 229 (769)
|+++....... .-+-...+++++++.+|..+++.+.+..
T Consensus 165 I~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 165 IFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred EEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 77765332210 0012357899999999999999888754
No 143
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.98 E-value=4.4e-06 Score=85.74 Aligned_cols=271 Identities=19% Similarity=0.179 Sum_probs=160.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCC-cEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGF-DFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFK 154 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 154 (769)
..+-+.++|+|||||||++.++.+ . ...| +.+.++....-.+...+.-..+..++.+.. +-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-----~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-----PGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhcccccc-----cchHHHHHHHH
Confidence 347899999999999999999999 4 2344 466677777777788888877877776542 22333445566
Q ss_pred HHccCCEEEEEecccCccc-ccccCCCCCCCCCCcEEEEeeccCCccccccccceEEcCCCCHH-HHHHHHHhhhCCCc-
Q 046742 155 ILSRKKFVLLLDDIWNRVD-LEKLGIPPMNTNGSSKIVFTTRSAGGCGLMEAHRIFKVKCLEHK-EAWELFQMKVGRET- 231 (769)
Q Consensus 155 ~l~~k~~LlVlDdv~~~~~-~~~~~~~~~~~~~~~~iivTtR~~~v~~~~~~~~~~~l~~l~~~-~a~~l~~~~~~~~~- 231 (769)
...+++.++|+||..+..+ -......+......-.|+.|+|.... +.......+++++.. ++.++|...+....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 7778899999999865422 11111112222334568889997653 334567788888865 78888877664322
Q ss_pred -cCCCCCHHHHHHHHHHHcCCchhHHHHHHHHhcCCCChhHH----HHHHHHHHhc--------ccCCCChhh-------
Q 046742 232 -LESHLQIPELAEIVAKECDGLPLALITIGRAMAFKKTPQEW----KDAIQVLRRS--------ASEFPGMDE------- 291 (769)
Q Consensus 232 -~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w----~~~l~~l~~~--------~~~~~~~~~------- 291 (769)
..-...-.....+|.+..+|.|++|..+++..+. ....+- .+-...+... .....++.-
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~s-l~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRS-LSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHh-cCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 1122233677889999999999999999988765 222211 1111111111 000000000
Q ss_pred -hhhHHhhhcCCCCCCccchhHHHHHHhhcCccc--cchhHhHHHHHHHHhhccccc---CCCceEEhHHHHHHHHHH
Q 046742 292 -IKSCFLYCCLFPEDCDISKIDLIDCWIGEGFFD--EYDRGYTIIGDLLRACLLEEV---NDNNVKLHDVIRDMGLWI 363 (769)
Q Consensus 292 -~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~--~~~~~~~~~~~L~~~sll~~~---~~~~~~mhdl~~~~~~~~ 363 (769)
.+..|--++.|...+... ...|.+-|-.. +.-.+...+-.++++++.... +...++.-+-.+.++...
T Consensus 240 we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 240 WERALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAE 313 (414)
T ss_pred HHHHHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 455566667777666544 23344444333 111455566677788777542 233444444444444433
No 144
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.00033 Score=70.63 Aligned_cols=192 Identities=17% Similarity=0.250 Sum_probs=113.6
Q ss_pred CchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHH
Q 046742 60 GLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQ 126 (769)
Q Consensus 60 Gr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 126 (769)
|-++.+++|.+.+.- +.++-|.+||++|.|||-||++|+++- .. -|+.+..+
T Consensus 155 GL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~A-----tFIrvvgS------- 219 (406)
T COG1222 155 GLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DA-----TFIRVVGS------- 219 (406)
T ss_pred CHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---Cc-----eEEEeccH-------
Confidence 789999999998742 456788999999999999999999986 33 34444433
Q ss_pred HHHHHH-hCCCCcccccccHHHHHHHHHHHHc-cCCEEEEEecccCcc------------c----ccccCCCCC--CCCC
Q 046742 127 ENIARK-IGLYDQSWKNKRLEIKAADIFKILS-RKKFVLLLDDIWNRV------------D----LEKLGIPPM--NTNG 186 (769)
Q Consensus 127 ~~i~~~-l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~------------~----~~~~~~~~~--~~~~ 186 (769)
++.+. ++-. ..+...+.+..+ ..+.+|.+|.++... + +-++...+. +...
T Consensus 220 -ElVqKYiGEG---------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 -ELVQKYIGEG---------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred -HHHHHHhccc---------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 12222 2211 122333344333 468999999986420 1 111212222 1234
Q ss_pred CcEEEEeeccCCccc-----cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchh----HHH
Q 046742 187 SSKIVFTTRSAGGCG-----LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPL----ALI 257 (769)
Q Consensus 187 ~~~iivTtR~~~v~~-----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl----ai~ 257 (769)
+.|||.+|...++.. -.+-+..++++.-+.+.-.++|+-+...-....+-+ .+.+++.+.|.-- |+.
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlkaic 365 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLKAIC 365 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHHHHH
Confidence 579998887666532 223456788887777777778887775544333333 4566677777653 455
Q ss_pred HHHHHhc--CCC---ChhHHHHHHHHHH
Q 046742 258 TIGRAMA--FKK---TPQEWKDAIQVLR 280 (769)
Q Consensus 258 ~~~~~l~--~~~---~~~~w~~~l~~l~ 280 (769)
+=|++++ ..+ +.+.+.++.+...
T Consensus 366 tEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 366 TEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 5555543 222 3444555444433
No 145
>PRK06620 hypothetical protein; Validated
Probab=97.98 E-value=4.2e-05 Score=74.66 Aligned_cols=154 Identities=10% Similarity=0.005 Sum_probs=87.3
Q ss_pred CCCc--hHHHHHHHHHhccC--Cc--cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHH
Q 046742 58 TLGL--ESTFDEVWRCLGEE--HV--GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIAR 131 (769)
Q Consensus 58 ~vGr--~~~~~~l~~~L~~~--~~--~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 131 (769)
+||. +.....+.++-... .. +.+.|+|++|+|||+|++.+++.. .. .++. ....
T Consensus 19 vvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~---------- 78 (214)
T PRK06620 19 IVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF---------- 78 (214)
T ss_pred EecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh----------
Confidence 3566 23355555554321 12 568999999999999999988775 11 1221 0000
Q ss_pred HhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcccccccCCCCC-CCCCCcEEEEeeccCCc-------cccc
Q 046742 132 KIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVDLEKLGIPPM-NTNGSSKIVFTTRSAGG-------CGLM 203 (769)
Q Consensus 132 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~-~~~~~~~iivTtR~~~v-------~~~~ 203 (769)
. . +..+ ..-++++||++..++. .+...+. -...|..||+|++.... ..++
T Consensus 79 ----~----~------------~~~~-~~d~lliDdi~~~~~~-~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl 136 (214)
T PRK06620 79 ----N----E------------EILE-KYNAFIIEDIENWQEP-ALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRI 136 (214)
T ss_pred ----c----h------------hHHh-cCCEEEEeccccchHH-HHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHH
Confidence 0 0 0111 2347888999743221 1111110 01235678998885432 1122
Q ss_pred cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHH
Q 046742 204 EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLAL 256 (769)
Q Consensus 204 ~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 256 (769)
.....+++++++.++-..++++.+...... -.++..+.|++.+.|---.+
T Consensus 137 ~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~---l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 137 KSVLSILLNSPDDELIKILIFKHFSISSVT---ISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred hCCceEeeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHccCCHHHH
Confidence 334579999999999888888876532211 22677788888776554433
No 146
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.0002 Score=80.41 Aligned_cols=190 Identities=14% Similarity=0.099 Sum_probs=103.5
Q ss_pred CCCCCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHh
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKI 133 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 133 (769)
-..+||.+..++.+.+++..++.+ .+.++|+.|+||||+|+.++... .-...-+ ....+.-...+.+....
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal-~c~~~~~-------~~pC~~C~~C~~i~~g~ 86 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAV-NCLNPPD-------GEPCNECEICKAITNGS 86 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCCCCCC-------CCCCCccHHHHHHhcCC
Confidence 367899999999999999876544 46779999999999999998876 2111000 00001111111111110
Q ss_pred CCCC---cccccccHHHHHHHHHHH-----HccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEee-ccCCcccc
Q 046742 134 GLYD---QSWKNKRLEIKAADIFKI-----LSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTT-RSAGGCGL 202 (769)
Q Consensus 134 ~~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTt-R~~~v~~~ 202 (769)
.... +.......++.. .+.+. ..++.-++|+|+++... .+..+...+.....+..+|++| ....+...
T Consensus 87 ~~dv~eidaas~~~vd~ir-~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 87 LMDVIEIDAASNNGVDEIR-DIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCeEEeeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 0000 000001112111 11111 23456689999997542 2333322222222344455444 33333222
Q ss_pred -ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHH
Q 046742 203 -MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLAL 256 (769)
Q Consensus 203 -~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 256 (769)
.+....+++.+++.++..+.+...+...+.. -..+.++.|++.++|-+..+
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~---i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIE---YEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 2234578999999999999988877543311 12567888999998877543
No 147
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.94 E-value=6.7e-05 Score=88.50 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=89.2
Q ss_pred CCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccC--CCCC-Cc-EEEEEEeCccccHHHHHHHHH
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSN--TPNG-FD-FVIWVVLSRDLQIDRLQENIA 130 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~--~~~~-f~-~~~wv~~~~~~~~~~~~~~i~ 130 (769)
..++|||+.++.++++.|......-+.++|++|+|||++|+.++.+... +... .. .+++++.+. ++..
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~ag-- 248 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LVAG-- 248 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hhhc--
Confidence 4678999999999999998766667779999999999999999998721 0000 01 223332221 1110
Q ss_pred HHhCCCCcccccccHHHHHHHHHHHH--ccCCEEEEEecccCcc---------cccccCCCCCCCCCCcEEEEeeccCCc
Q 046742 131 RKIGLYDQSWKNKRLEIKAADIFKIL--SRKKFVLLLDDIWNRV---------DLEKLGIPPMNTNGSSKIVFTTRSAGG 199 (769)
Q Consensus 131 ~~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~~~~~~~~~~~~~~iivTtR~~~v 199 (769)
.. ...+.++.+..+.+.+ .+++.+|++|+++... +...+..+....+ .-++|-||...+.
T Consensus 249 ----~~----~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e~ 319 (857)
T PRK10865 249 ----AK----YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEY 319 (857)
T ss_pred ----cc----hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHHH
Confidence 00 1122233333333332 2468999999987542 1222222222222 2455555544432
Q ss_pred c-------ccccccceEEcCCCCHHHHHHHHHhhh
Q 046742 200 C-------GLMEAHRIFKVKCLEHKEAWELFQMKV 227 (769)
Q Consensus 200 ~-------~~~~~~~~~~l~~l~~~~a~~l~~~~~ 227 (769)
. ...+....+.+...+.++..+++....
T Consensus 320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1 011223467777779999999886654
No 148
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.94 E-value=4.1e-05 Score=90.47 Aligned_cols=178 Identities=20% Similarity=0.215 Sum_probs=99.1
Q ss_pred CCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccC--CCCCC-cEEEEEEeCccccHHHHHHHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSN--TPNGF-DFVIWVVLSRDLQIDRLQENIARK 132 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~--~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~ 132 (769)
.+++||+++++++++.|......-+.++|++|+|||++|..++.+... +.... +..+|. + +...++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a----- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA----- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc-----
Confidence 567999999999999998766566779999999999999999998721 11111 234442 1 2221111
Q ss_pred hCCCCcccccccHHHHHHHHHHHHc-cCCEEEEEecccCcc---------cccccCCCCCCCCCCcEEEEeeccCCccc-
Q 046742 133 IGLYDQSWKNKRLEIKAADIFKILS-RKKFVLLLDDIWNRV---------DLEKLGIPPMNTNGSSKIVFTTRSAGGCG- 201 (769)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~---------~~~~~~~~~~~~~~~~~iivTtR~~~v~~- 201 (769)
+.. ...+.++.+..+.+.+. .++.+|++|+++... +...+..+....+ .-++|.+|...+...
T Consensus 249 -g~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 249 -GTK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKH 322 (821)
T ss_pred -cCC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHH
Confidence 110 11233444444444433 468999999996321 1122211111122 245555555443211
Q ss_pred ------cccccceEEcCCCCHHHHHHHHHhhhCC--CccCCCCCHHHHHHHHHHHcC
Q 046742 202 ------LMEAHRIFKVKCLEHKEAWELFQMKVGR--ETLESHLQIPELAEIVAKECD 250 (769)
Q Consensus 202 ------~~~~~~~~~l~~l~~~~a~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~~~ 250 (769)
.......+.+...+.++...++...... ...... -..+....+++.++
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~-i~deal~~i~~ls~ 378 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLS-ISDKALEAAAKLSD 378 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhh
Confidence 1123456888999999988887654311 000011 12455566666654
No 149
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.94 E-value=9.3e-05 Score=87.72 Aligned_cols=156 Identities=13% Similarity=0.160 Sum_probs=90.1
Q ss_pred CCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCC----CcEEEEEEeCccccHHHHHHHHH
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNG----FDFVIWVVLSRDLQIDRLQENIA 130 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~ 130 (769)
..++|||+.++.+++..|......-+.++|++|+|||++|..++.+... ... ....+|.- ++..++.
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~~p~~l~~~~~~~l-----~~~~l~a--- 242 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN-GDVPESLKNKRLLAL-----DMGALIA--- 242 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc-cCCchhhcCCeEEEe-----eHHHHhh---
Confidence 3668999999999999997766667779999999999999999998721 110 11222321 1111110
Q ss_pred HHhCCCCcccccccHHHHHHHHHHHHc--cCCEEEEEecccCcc---------cccccCCCCCCCCCCcEEEEeeccCCc
Q 046742 131 RKIGLYDQSWKNKRLEIKAADIFKILS--RKKFVLLLDDIWNRV---------DLEKLGIPPMNTNGSSKIVFTTRSAGG 199 (769)
Q Consensus 131 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~~~~~~~~~~~~~~iivTtR~~~v 199 (769)
+.. ...+.+..+..+.+.+. +++.+|++|+++... +...+..+....+ .-++|-+|...+.
T Consensus 243 ---~~~----~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~e~ 314 (852)
T TIGR03346 243 ---GAK----YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLDEY 314 (852)
T ss_pred ---cch----hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHHHH
Confidence 000 11223333344444432 468999999997432 1122222222222 2345544443332
Q ss_pred c-------ccccccceEEcCCCCHHHHHHHHHhhh
Q 046742 200 C-------GLMEAHRIFKVKCLEHKEAWELFQMKV 227 (769)
Q Consensus 200 ~-------~~~~~~~~~~l~~l~~~~a~~l~~~~~ 227 (769)
. ...+....+.++..+.++..+++....
T Consensus 315 r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 315 RKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1 111233568899999999999987654
No 150
>PRK10536 hypothetical protein; Provisional
Probab=97.93 E-value=9e-05 Score=72.66 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=43.9
Q ss_pred CCCCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEE
Q 046742 53 RPIPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWV 114 (769)
Q Consensus 53 ~~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv 114 (769)
.....+.+|......+..++.+. ..|.++|++|+|||+||..++.+. -..+.|+.++-.
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~-l~~~~~~kIiI~ 110 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA-LIHKDVDRIIVT 110 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH-HhcCCeeEEEEe
Confidence 33355578999999999988764 489999999999999999998864 113446544443
No 151
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.91 E-value=6.9e-05 Score=86.31 Aligned_cols=156 Identities=18% Similarity=0.211 Sum_probs=90.4
Q ss_pred CCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCC---CcEEEEEEeCccccHHHHHHHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNG---FDFVIWVVLSRDLQIDRLQENIARK 132 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~~ 132 (769)
++++||++++.++++.|......-+.++|++|+|||++|+.+++........ .+..+|.. +...++.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~lla----- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSLLA----- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHHhc-----
Confidence 5679999999999999987555566799999999999999999875211111 13344421 1111110
Q ss_pred hCCCCcccccccHHHHHHHHHHHH-ccCCEEEEEecccCc----------ccccccCCCCCCCCCCcEEEEeeccCCccc
Q 046742 133 IGLYDQSWKNKRLEIKAADIFKIL-SRKKFVLLLDDIWNR----------VDLEKLGIPPMNTNGSSKIVFTTRSAGGCG 201 (769)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~~~~~~~~~~~~~~iivTtR~~~v~~ 201 (769)
+.. ...+.+.....+.+.+ +.++.+|++|+++.. .+...+..++... ..-++|-+|...++..
T Consensus 256 -G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 256 -GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSN 329 (758)
T ss_pred -ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHH
Confidence 000 1123333444444444 346789999999743 1121121122112 1234554444333210
Q ss_pred -------cccccceEEcCCCCHHHHHHHHHhhh
Q 046742 202 -------LMEAHRIFKVKCLEHKEAWELFQMKV 227 (769)
Q Consensus 202 -------~~~~~~~~~l~~l~~~~a~~l~~~~~ 227 (769)
..+....+.+++.+.+++.+++....
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11233579999999999999998764
No 152
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.90 E-value=8.6e-05 Score=80.67 Aligned_cols=151 Identities=13% Similarity=0.083 Sum_probs=89.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILS 157 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 157 (769)
..+.|+|+.|+|||+|++.+++.... . ...+++++ .+.+...+...+... . ...+++.++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~--~-~~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE--S-GGKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH--c-CCCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHHcc
Confidence 56889999999999999999998731 1 23345653 344555555554311 1 123444443
Q ss_pred cCCEEEEEecccCccc----ccccCCCCCC-CCCCcEEEEeeccC---------CccccccccceEEcCCCCHHHHHHHH
Q 046742 158 RKKFVLLLDDIWNRVD----LEKLGIPPMN-TNGSSKIVFTTRSA---------GGCGLMEAHRIFKVKCLEHKEAWELF 223 (769)
Q Consensus 158 ~k~~LlVlDdv~~~~~----~~~~~~~~~~-~~~~~~iivTtR~~---------~v~~~~~~~~~~~l~~l~~~~a~~l~ 223 (769)
. .-+|++||++.... .+++...+.. ...|..||+||... .+..++.....+.+.+++.++-..++
T Consensus 202 ~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 N-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred c-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 3 34888899865321 1122111110 11245688887542 11222333467899999999999999
Q ss_pred HhhhCCCccCCCCCHHHHHHHHHHHcCCc
Q 046742 224 QMKVGRETLESHLQIPELAEIVAKECDGL 252 (769)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 252 (769)
++.+...... -..+..+.|++.+.|.
T Consensus 281 ~~k~~~~~~~---l~~evl~~la~~~~~d 306 (445)
T PRK12422 281 ERKAEALSIR---IEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHcCCC---CCHHHHHHHHHhcCCC
Confidence 9887554311 2256777777776644
No 153
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.6e-05 Score=55.33 Aligned_cols=34 Identities=44% Similarity=0.632 Sum_probs=15.4
Q ss_pred CCCEEeccCCCCcccchhhhcCCCCcEEecCCCc
Q 046742 463 SLQHLNLSLTNIKELPEELKALVNLKCLNLDYTK 496 (769)
Q Consensus 463 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~ 496 (769)
+|++|++++|+|+++|..+++|++|+.|++++|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 3444444444444444444444444444444443
No 154
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.88 E-value=8.1e-05 Score=81.26 Aligned_cols=161 Identities=11% Similarity=0.102 Sum_probs=89.3
Q ss_pred CCCCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCC---CCCcEEEEEEeCcc
Q 046742 56 PQTLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTP---NGFDFVIWVVLSRD 119 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~ 119 (769)
..+.|.+..++++.+.+.. ...+-+.++|++|+|||++|+.+++... .. .......|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~-~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA-QRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc-cccccccCCceeEEeccch
Confidence 4457899999999887631 2345688999999999999999999872 11 01223445544432
Q ss_pred ccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHH-ccCCEEEEEecccCcc---------cc-----cccCCCCCC-
Q 046742 120 LQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKIL-SRKKFVLLLDDIWNRV---------DL-----EKLGIPPMN- 183 (769)
Q Consensus 120 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~-----~~~~~~~~~- 183 (769)
. + +...... ............++.. .+++++|+||+++... +. ..+...+..
T Consensus 261 e----L----l~kyvGe----te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 261 E----L----LNKYVGE----TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred h----h----cccccch----HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 1 1 1110000 0111111112222211 2478999999997431 11 122111211
Q ss_pred -CCCCcEEEEeeccCCccc-----cccccceEEcCCCCHHHHHHHHHhhhCC
Q 046742 184 -TNGSSKIVFTTRSAGGCG-----LMEAHRIFKVKCLEHKEAWELFQMKVGR 229 (769)
Q Consensus 184 -~~~~~~iivTtR~~~v~~-----~~~~~~~~~l~~l~~~~a~~l~~~~~~~ 229 (769)
...+..||.||...+... ..+-+..++++..+.++..++|++.+..
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 123444555665443211 1123456899999999999999988643
No 155
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=2e-05 Score=54.78 Aligned_cols=41 Identities=39% Similarity=0.592 Sum_probs=34.4
Q ss_pred CcceEEEecCCCCCccccccccCCcCCCEEeccCCCCcccch
Q 046742 438 PSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNIKELPE 479 (769)
Q Consensus 438 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~ 479 (769)
++|++|++++| .++++|..+++|++|++|++++|+++++|.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 57999999999 788899889999999999999999987753
No 156
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.85 E-value=2.3e-06 Score=73.42 Aligned_cols=109 Identities=21% Similarity=0.357 Sum_probs=80.8
Q ss_pred EEEEeecccccccccC----CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEec
Q 046742 394 IRRMSLMENQVQSLSK----IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNL 469 (769)
Q Consensus 394 l~~L~l~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 469 (769)
+..++++++.+-.++. +....+|...++++|.++++|+.+..+.+.++.|+|++| .+.++|.++..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccc
Confidence 3445555665544333 456677778888888888888887777778888888888 77888888888888888888
Q ss_pred cCCCCcccchhhhcCCCCcEEecCCCcCcCccCcc
Q 046742 470 SLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRH 504 (769)
Q Consensus 470 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~ 504 (769)
+.|.+...|+-+..|.+|-.|+..+|. ...+|-.
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 888888888887778888888877764 4555543
No 157
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.81 E-value=5e-07 Score=97.57 Aligned_cols=129 Identities=24% Similarity=0.324 Sum_probs=99.2
Q ss_pred cceeEEEEeecccccccccC-CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcccccc-ccCCcCCCEE
Q 046742 390 KWQVIRRMSLMENQVQSLSK-IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSG-ISRLVSLQHL 467 (769)
Q Consensus 390 ~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L 467 (769)
.|..|...++++|.+..+-. +.-++.|+.|+|++|.+++.. ++..|++|++|||++| .+..+|.. ...+. |+.|
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhh-heee
Confidence 35578888888888765533 455788999999999988875 4888999999999999 77777752 33344 9999
Q ss_pred eccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccc
Q 046742 468 NLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYF 523 (769)
Q Consensus 468 ~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 523 (769)
++++|.++++ .++.+|.+|+.||+++|-....-.-..++.|..|..|++.+|++.
T Consensus 238 ~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 238 NLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9999999888 578999999999999985332211122677888999999988763
No 158
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=1.9e-06 Score=83.59 Aligned_cols=130 Identities=20% Similarity=0.142 Sum_probs=73.1
Q ss_pred eEEEEeecccccccc--c-CCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccc--cccCCcCCCEE
Q 046742 393 VIRRMSLMENQVQSL--S-KIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPS--GISRLVSLQHL 467 (769)
Q Consensus 393 ~l~~L~l~~~~~~~~--~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~--~i~~l~~L~~L 467 (769)
.+++|++++..++.- . -++.|..|+.|.+.|+.+..-...-+.+-.+|+.|||+.|..+++... -+.++..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 577888877665431 1 146677777777777766544344456667777777777766654322 34667777777
Q ss_pred eccCCCCc-c-cchhhhc-CCCCcEEecCCCcCc--CccCcccccCCcccceeeeecccc
Q 046742 468 NLSLTNIK-E-LPEELKA-LVNLKCLNLDYTKSL--CRIPRHLISNFSMLYILRIVDCHY 522 (769)
Q Consensus 468 ~l~~~~l~-~-lp~~~~~-l~~L~~L~l~~~~~l--~~~p~~~i~~L~~L~~L~l~~~~~ 522 (769)
++++|.+. + +...+.+ -.+|..|+++|+... .+--.....++++|.+||+++|..
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence 77777544 1 1111222 235666677666310 000011234566666666665543
No 159
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.79 E-value=3.4e-06 Score=92.05 Aligned_cols=105 Identities=27% Similarity=0.431 Sum_probs=66.3
Q ss_pred CCcceeEEEEeecccccccccC-CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCE
Q 046742 388 TGKWQVIRRMSLMENQVQSLSK-IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQH 466 (769)
Q Consensus 388 ~~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 466 (769)
+..++++..+++.+|.+..+.. +..+++|++|++++|.++.+.. +..++.|+.|++++| .+..++ .+..+..|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhcc-CCccchhhhc
Confidence 3444566777777777766666 6667777777777776666655 556666777777776 454444 3334666667
Q ss_pred EeccCCCCcccchh-hhcCCCCcEEecCCCc
Q 046742 467 LNLSLTNIKELPEE-LKALVNLKCLNLDYTK 496 (769)
Q Consensus 467 L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 496 (769)
+++++|.+..++.. ...+.+|+.+.+.+|.
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 77777666665543 4666666666666664
No 160
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.77 E-value=0.00055 Score=72.06 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=91.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCc--EEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFD--FVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIF 153 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 153 (769)
....+.|+|..|.|||-|++++.+... .... .++.+ +.+....++..++.. ...+.++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~---~~~~~a~v~y~------~se~f~~~~v~a~~~-----------~~~~~Fk 171 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEAL---ANGPNARVVYL------TSEDFTNDFVKALRD-----------NEMEKFK 171 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHH---hhCCCceEEec------cHHHHHHHHHHHHHh-----------hhHHHHH
Confidence 367899999999999999999999872 3332 34444 455555555555431 1244555
Q ss_pred HHHccCCEEEEEecccCccc----ccccCCCCCC-CCCCcEEEEeeccCC---------ccccccccceEEcCCCCHHHH
Q 046742 154 KILSRKKFVLLLDDIWNRVD----LEKLGIPPMN-TNGSSKIVFTTRSAG---------GCGLMEAHRIFKVKCLEHKEA 219 (769)
Q Consensus 154 ~~l~~k~~LlVlDdv~~~~~----~~~~~~~~~~-~~~~~~iivTtR~~~---------v~~~~~~~~~~~l~~l~~~~a 219 (769)
+.. .-=++++||++-... -+++...+.. ...|-.||+|++... +..++...-.+++.+.+.+..
T Consensus 172 ~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 172 EKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred Hhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 555 333888999874321 1222221211 122338999987532 223344567899999999999
Q ss_pred HHHHHhhhCCCccCCCCCHHHHHHHHHHHc
Q 046742 220 WELFQMKVGRETLESHLQIPELAEIVAKEC 249 (769)
Q Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ 249 (769)
..++.+.+.......+ ++...-|++..
T Consensus 250 ~aiL~kka~~~~~~i~---~ev~~~la~~~ 276 (408)
T COG0593 250 LAILRKKAEDRGIEIP---DEVLEFLAKRL 276 (408)
T ss_pred HHHHHHHHHhcCCCCC---HHHHHHHHHHh
Confidence 9999997755443332 45555555544
No 161
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.75 E-value=0.00012 Score=82.19 Aligned_cols=51 Identities=16% Similarity=0.181 Sum_probs=42.0
Q ss_pred ccCCCCCCCCchHHHHHHHHHhccC-----CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 51 EERPIPQTLGLESTFDEVWRCLGEE-----HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 51 ~~~~~~~~vGr~~~~~~l~~~L~~~-----~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.|.....++|.++.++++..++... ..++++|+|++|+||||+++.++...
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444567899999999999999652 33569999999999999999999876
No 162
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.75 E-value=0.00064 Score=75.86 Aligned_cols=171 Identities=15% Similarity=0.113 Sum_probs=94.2
Q ss_pred CCCCCchHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 56 PQTLGLESTFDEVWRCLG---E---------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
..++|.++..+++.+++. . ...+-+.++|++|+|||++|+.++... ... ++.++..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~-----~~~i~~~---- 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVP-----FFSISGS---- 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCC-----eeeccHH----
Confidence 456898888777766553 1 234468899999999999999999886 222 2222211
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc----------------ccccCCCCC--CCC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD----------------LEKLGIPPM--NTN 185 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~~~--~~~ 185 (769)
++... ..+ .........+.......+.+|+|||++.... +..+...+. ...
T Consensus 123 ~~~~~---~~g--------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DFVEM---FVG--------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHHH---Hhc--------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 11110 011 1112222333333345678999999965310 011111111 122
Q ss_pred CCcEEEEeeccCCc-----cccccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 186 GSSKIVFTTRSAGG-----CGLMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 186 ~~~~iivTtR~~~v-----~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
.+..||.||...+. ....+-+..+.++..+.++-.++++..+....... ......+++.+.|.-
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~----~~~l~~la~~t~G~s 260 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP----DVDLKAVARRTPGFS 260 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc----chhHHHHHHhCCCCC
Confidence 34455556654432 11112346789999999999999988765432111 223457788877743
No 163
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.75 E-value=0.00019 Score=79.48 Aligned_cols=157 Identities=20% Similarity=0.183 Sum_probs=94.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKIL 156 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 156 (769)
...+.|+|..|+|||.|+..+++........ ..++++ +..++..++...+.. .. ...+++.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g-~~V~Yi------taeef~~el~~al~~-------~~----~~~f~~~y 375 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPG-TRVRYV------SSEEFTNEFINSIRD-------GK----GDSFRRRY 375 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCC-CeEEEe------eHHHHHHHHHHHHHh-------cc----HHHHHHHh
Confidence 3458999999999999999999987211112 245666 345555555544421 11 12233344
Q ss_pred ccCCEEEEEecccCccc---cc-ccCCCCCC-CCCCcEEEEeeccC---------CccccccccceEEcCCCCHHHHHHH
Q 046742 157 SRKKFVLLLDDIWNRVD---LE-KLGIPPMN-TNGSSKIVFTTRSA---------GGCGLMEAHRIFKVKCLEHKEAWEL 222 (769)
Q Consensus 157 ~~k~~LlVlDdv~~~~~---~~-~~~~~~~~-~~~~~~iivTtR~~---------~v~~~~~~~~~~~l~~l~~~~a~~l 222 (769)
++ -=+|||||++.... ++ .+...+.. ...+..|||||+.. .+...+...-.+++++.+.+.-.++
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 33 24788899975421 11 12111111 12345688888753 1233344566889999999999999
Q ss_pred HHhhhCCCccCCCCCHHHHHHHHHHHcCCchhH
Q 046742 223 FQMKVGRETLESHLQIPELAEIVAKECDGLPLA 255 (769)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 255 (769)
+.+++....... ..++++.|++.+.+..-.
T Consensus 455 L~kka~~r~l~l---~~eVi~yLa~r~~rnvR~ 484 (617)
T PRK14086 455 LRKKAVQEQLNA---PPEVLEFIASRISRNIRE 484 (617)
T ss_pred HHHHHHhcCCCC---CHHHHHHHHHhccCCHHH
Confidence 999876544222 267788888887755433
No 164
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.00044 Score=72.04 Aligned_cols=95 Identities=9% Similarity=0.038 Sum_probs=57.7
Q ss_pred cCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeeccCC-cccc-ccccceEEcCCCCHHHHHHHHHhhhCCCccC
Q 046742 158 RKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTRSAG-GCGL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLE 233 (769)
Q Consensus 158 ~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR~~~-v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~ 233 (769)
+++-++|+|+++... ....+.-.+..-..++.+|+||.+.+ +... ......+.+.+++.+++.+.+.+.....
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~--- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES--- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC---
Confidence 344566789998642 22222111222224566777776653 3322 2334679999999999999997754211
Q ss_pred CCCCHHHHHHHHHHHcCCchhHHHHH
Q 046742 234 SHLQIPELAEIVAKECDGLPLALITI 259 (769)
Q Consensus 234 ~~~~~~~~~~~i~~~~~g~Plai~~~ 259 (769)
..+.+..++..++|.|..+..+
T Consensus 182 ----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 ----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1445677889999999765444
No 165
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.72 E-value=0.0014 Score=63.71 Aligned_cols=50 Identities=16% Similarity=0.277 Sum_probs=40.1
Q ss_pred cCCCCCCCCchHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 52 ERPIPQTLGLESTFDEVWRCLG----EEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 52 ~~~~~~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+.+.+.++|.|...+.|.+-.. .....-|.++|..|+|||++++.+.+.+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 3344678999999999876553 3445568899999999999999999987
No 166
>CHL00176 ftsH cell division protein; Validated
Probab=97.71 E-value=0.00094 Score=75.67 Aligned_cols=169 Identities=15% Similarity=0.116 Sum_probs=96.0
Q ss_pred CCCCCchHHHHHHHHHh---cc---------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 56 PQTLGLESTFDEVWRCL---GE---------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L---~~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
..++|.++..+++.+.+ .. ...+-|.++|++|+|||++|+.++... ... |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----
Confidence 45678887777765554 22 124468899999999999999999986 222 2222211
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc----------------cccccCCCCC--CCC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV----------------DLEKLGIPPM--NTN 185 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~~~~~~~--~~~ 185 (769)
++... ..+ .........+.+.....+.+|+|||++... .+..+...+. ...
T Consensus 251 ~f~~~---~~g--------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFVEM---FVG--------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHHHH---hhh--------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 11110 001 111222333444445678999999996431 0111211111 123
Q ss_pred CCcEEEEeeccCCccc-----cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCC
Q 046742 186 GSSKIVFTTRSAGGCG-----LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDG 251 (769)
Q Consensus 186 ~~~~iivTtR~~~v~~-----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 251 (769)
.+..||.||...+... ..+-...+.++..+.++-.++++..+.... .........+++.+.|
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~----~~~d~~l~~lA~~t~G 386 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK----LSPDVSLELIARRTPG 386 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc----cchhHHHHHHHhcCCC
Confidence 4555666666543211 112346788999999999999988875432 1123445677887777
No 167
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.0008 Score=69.72 Aligned_cols=197 Identities=13% Similarity=0.099 Sum_probs=106.5
Q ss_pred CCCCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHhhccCCC------------CCCcEEEEEEeCccccH
Q 046742 56 PQTLGLESTFDEVWRCLGEEHV-GIIGLYGMGEVGKTTLLTRINNKFSNTP------------NGFDFVIWVVLSRDLQI 122 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~~~------------~~f~~~~wv~~~~~~~~ 122 (769)
..++|.++.++.+.+.+..++. +...++|+.|+||+++|..++..+--.. ....-..|+.-....+-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 4678999999999999987764 7888999999999999999988751110 01111233321100000
Q ss_pred HHHHHHHHHHhCCCCcccccccHHHHHHHHHHHH-----ccCCEEEEEecccCccc--ccccCCCCCCCCCCcEEEEeec
Q 046742 123 DRLQENIARKIGLYDQSWKNKRLEIKAADIFKIL-----SRKKFVLLLDDIWNRVD--LEKLGIPPMNTNGSSKIVFTTR 195 (769)
Q Consensus 123 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~iivTtR 195 (769)
..+-..-++..+...........++. ..+.+.+ .+++-++|+|+++.... ...+.-.+-.-.+..-|++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~ 162 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPS 162 (314)
T ss_pred cccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence 00000111111111100011122222 2233333 35667999999975432 1112111111112333444444
Q ss_pred cCCccccc-cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHH
Q 046742 196 SAGGCGLM-EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITI 259 (769)
Q Consensus 196 ~~~v~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 259 (769)
...+.... .....+++.+++.++..+.+.+...... .......++..++|.|..+..+
T Consensus 163 ~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 163 PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 44443322 3456899999999999999988753221 1112467899999999755443
No 168
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.67 E-value=0.00012 Score=66.48 Aligned_cols=88 Identities=20% Similarity=0.098 Sum_probs=49.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILS 157 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 157 (769)
..+.|+|++|+||||+|+.++.... .....++.+..+........... ........ ...........+.+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLL-LIIVGGKK---ASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHH-hhhhhccC---CCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999982 22234566655443322222111 11111100 11222233334444444
Q ss_pred cC-CEEEEEecccCcc
Q 046742 158 RK-KFVLLLDDIWNRV 172 (769)
Q Consensus 158 ~k-~~LlVlDdv~~~~ 172 (769)
.. ..++++|+++...
T Consensus 76 ~~~~~viiiDei~~~~ 91 (148)
T smart00382 76 KLKPDVLILDEITSLL 91 (148)
T ss_pred hcCCCEEEEECCcccC
Confidence 43 4899999998653
No 169
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.67 E-value=0.002 Score=67.56 Aligned_cols=201 Identities=14% Similarity=0.191 Sum_probs=125.7
Q ss_pred chHHHHHHHHHhccCCccEEEEEcCCCCcHHHHH-HHHHhhccCCCCCCcEEEEEEeCcc---ccHHHHHHHHHHHhCCC
Q 046742 61 LESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLL-TRINNKFSNTPNGFDFVIWVVLSRD---LQIDRLQENIARKIGLY 136 (769)
Q Consensus 61 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa-~~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~ 136 (769)
|.+.+++|..||.+..-..|+|.||-|+||+.|+ .++..+. +. +..++|.+- .+-..++..++.++|--
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r---~~----vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR---KN----VLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC---CC----EEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 6778999999999888889999999999999999 7777764 11 677776542 23455666666665421
Q ss_pred C----------------------cccccccHHHHHHHHHH----HHcc--------------------------CCEEEE
Q 046742 137 D----------------------QSWKNKRLEIKAADIFK----ILSR--------------------------KKFVLL 164 (769)
Q Consensus 137 ~----------------------~~~~~~~~~~~~~~l~~----~l~~--------------------------k~~LlV 164 (769)
+ ...-..+.+.....+.+ .|++ ++=++|
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1 11112233322222211 1110 145899
Q ss_pred EecccCccc--------ccccCCCCCCCCCCcEEEEeeccCCccc----cc--cccceEEcCCCCHHHHHHHHHhhhCCC
Q 046742 165 LDDIWNRVD--------LEKLGIPPMNTNGSSKIVFTTRSAGGCG----LM--EAHRIFKVKCLEHKEAWELFQMKVGRE 230 (769)
Q Consensus 165 lDdv~~~~~--------~~~~~~~~~~~~~~~~iivTtR~~~v~~----~~--~~~~~~~l~~l~~~~a~~l~~~~~~~~ 230 (769)
+||.....+ +.++...+. ..+-..||++|-+..... .+ .....+.|...+.+-|..+....+...
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 999864321 111111121 223356888887654432 22 245678999999999999999988654
Q ss_pred ccC-------------C----CCCHHHHHHHHHHHcCCchhHHHHHHHHhcCCCCh
Q 046742 231 TLE-------------S----HLQIPELAEIVAKECDGLPLALITIGRAMAFKKTP 269 (769)
Q Consensus 231 ~~~-------------~----~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~ 269 (769)
... . .....+-.+..++..||==.-+..+++.++...++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 233 TEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 210 0 01244556778889999999999999999875444
No 170
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=0.00013 Score=76.60 Aligned_cols=81 Identities=21% Similarity=0.395 Sum_probs=57.1
Q ss_pred ceeEEEEeecccccccccCCCCCCCccEEEccCC-CCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEec
Q 046742 391 WQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNN-NLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNL 469 (769)
Q Consensus 391 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 469 (769)
+.++++|++++|.++.+|.++ .+|++|.+++| .++.+|.. + .++|++|++++|..+..+|.. |+.|++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRSLEI 119 (426)
T ss_pred hcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc------cceEEe
Confidence 346788999988888887543 36999999886 55566543 3 358999999998777777754 566667
Q ss_pred cCCC---Ccccchhhh
Q 046742 470 SLTN---IKELPEELK 482 (769)
Q Consensus 470 ~~~~---l~~lp~~~~ 482 (769)
.++. +..+|.++.
T Consensus 120 ~~n~~~~L~~LPssLk 135 (426)
T PRK15386 120 KGSATDSIKNVPNGLT 135 (426)
T ss_pred CCCCCcccccCcchHh
Confidence 6654 556776543
No 171
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.63 E-value=0.00018 Score=64.55 Aligned_cols=69 Identities=23% Similarity=0.101 Sum_probs=41.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHcc-
Q 046742 80 IGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSR- 158 (769)
Q Consensus 80 v~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~- 158 (769)
|.|+|++|+|||++|+.+++.. .. ..+.++.+.-.+. ........+...+.+.-..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~---~~~~i~~~~~~~~-----------------~~~~~~~~i~~~~~~~~~~~ 57 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GF---PFIEIDGSELISS-----------------YAGDSEQKIRDFFKKAKKSA 57 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TS---EEEEEETTHHHTS-----------------STTHHHHHHHHHHHHHHHTS
T ss_pred CEEECcCCCCeeHHHHHHHhhc---cc---ccccccccccccc-----------------cccccccccccccccccccc
Confidence 5799999999999999999997 21 2345544332100 0122222333333333223
Q ss_pred CCEEEEEecccCc
Q 046742 159 KKFVLLLDDIWNR 171 (769)
Q Consensus 159 k~~LlVlDdv~~~ 171 (769)
++.+|++||++..
T Consensus 58 ~~~vl~iDe~d~l 70 (132)
T PF00004_consen 58 KPCVLFIDEIDKL 70 (132)
T ss_dssp TSEEEEEETGGGT
T ss_pred cceeeeeccchhc
Confidence 3799999999753
No 172
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0017 Score=67.02 Aligned_cols=178 Identities=12% Similarity=0.052 Sum_probs=94.6
Q ss_pred hHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcE-----EEEEEeCccccHHHHHHHHHHHhCC
Q 046742 62 ESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDF-----VIWVVLSRDLQIDRLQENIARKIGL 135 (769)
Q Consensus 62 ~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~-----~~wv~~~~~~~~~~~~~~i~~~l~~ 135 (769)
+...+.+...+..++.+ .+.++|+.|+||+++|..++..+-- .+...+ .-|+..+..+|+..+. ..
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC-~~~~~~~~c~~c~~~~~g~HPD~~~i~-------~~ 81 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA-SGPDPAAAQRTRQLIAAGTHPDLQLVS-------FI 81 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC-CCCCCCCcchHHHHHhcCCCCCEEEEe-------cC
Confidence 44566777777766544 5889999999999999999887611 110000 0000000000000000 00
Q ss_pred CCccc----ccccHHHHHHHHHHHH-----ccCCEEEEEecccCccc-----ccccCCCCCCCCCCcEEEEeecc-CCcc
Q 046742 136 YDQSW----KNKRLEIKAADIFKIL-----SRKKFVLLLDDIWNRVD-----LEKLGIPPMNTNGSSKIVFTTRS-AGGC 200 (769)
Q Consensus 136 ~~~~~----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~-----~~~~~~~~~~~~~~~~iivTtR~-~~v~ 200 (769)
+.... ....++++. .+.+.+ .+++-++|+|+++.... +-++ +..-..++.+|++|.+ ..+.
T Consensus 82 p~~~~~k~~~~I~idqIR-~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKt---LEEPp~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 82 PNRTGDKLRTEIVIEQVR-EISQKLALTPQYGIAQVVIVDPADAINRAACNALLKT---LEEPSPGRYLWLISAQPARLP 157 (319)
T ss_pred CCcccccccccccHHHHH-HHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHH---hhCCCCCCeEEEEECChhhCc
Confidence 00000 011122222 222222 24566999999976421 2222 2122235666666654 3443
Q ss_pred ccc-cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHH
Q 046742 201 GLM-EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIG 260 (769)
Q Consensus 201 ~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 260 (769)
... .....+.+.+++.+++.+.+... +.. .+.+..++..++|.|+.+..+.
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~~~-~~~--------~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLLAQ-GVS--------ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHHHc-CCC--------hHHHHHHHHHcCCCHHHHHHHh
Confidence 322 33467899999999999988753 111 3346788999999998665443
No 173
>PRK08118 topology modulation protein; Reviewed
Probab=97.55 E-value=0.00018 Score=67.34 Aligned_cols=36 Identities=31% Similarity=0.505 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEE
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIW 113 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~w 113 (769)
..|.|+|++|+||||||+.+++...-..-+|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 368899999999999999999997222356777776
No 174
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.54 E-value=0.00016 Score=75.84 Aligned_cols=135 Identities=19% Similarity=0.323 Sum_probs=85.8
Q ss_pred CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCC-CCcccchhhhcCCCCc
Q 046742 410 IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLT-NIKELPEELKALVNLK 488 (769)
Q Consensus 410 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~ 488 (769)
+..+.+++.|++++|.++.+|. + ..+|+.|++++|..+..+|..+ ..+|++|++++| .+..+|.+ |+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cc
Confidence 4567899999999999988873 2 3479999999998888888766 368999999998 78888864 55
Q ss_pred EEecCCC--cCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcC-cCCcEEEEEeccchhhhhhhcccccc
Q 046742 489 CLNLDYT--KSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLM-ENLNVLGINLTSSHALSKFLSSHRIQ 565 (769)
Q Consensus 489 ~L~l~~~--~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~ 565 (769)
.|++..+ ..+..+|.+ |+.|.+.+++....... . ..+ ++|+.|.+..+....++ ..++
T Consensus 116 ~L~L~~n~~~~L~~LPss-------Lk~L~I~~~n~~~~~~l-----p--~~LPsSLk~L~Is~c~~i~LP-----~~LP 176 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNG-------LTSLSINSYNPENQARI-----D--NLISPSLKTLSLTGCSNIILP-----EKLP 176 (426)
T ss_pred eEEeCCCCCcccccCcch-------Hhheecccccccccccc-----c--cccCCcccEEEecCCCcccCc-----cccc
Confidence 5556543 234556653 55665543221100000 0 012 56777777655433222 1234
Q ss_pred cccceeeecc
Q 046742 566 SYILHLRLEL 575 (769)
Q Consensus 566 ~~l~~L~l~~ 575 (769)
.+++.|.+..
T Consensus 177 ~SLk~L~ls~ 186 (426)
T PRK15386 177 ESLQSITLHI 186 (426)
T ss_pred ccCcEEEecc
Confidence 5677777644
No 175
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.54 E-value=0.00011 Score=67.90 Aligned_cols=82 Identities=32% Similarity=0.506 Sum_probs=50.6
Q ss_pred eEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccc--cccCCcCCCEEecc
Q 046742 393 VIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPS--GISRLVSLQHLNLS 470 (769)
Q Consensus 393 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~--~i~~l~~L~~L~l~ 470 (769)
....+++.+|++..++.++.+++|.+|.+.+|.++.+.+..-..+++|.+|.|++| .+..+-+ -+..++.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence 34566777777777777777777777777777777776665555666777777776 4433321 13344555555555
Q ss_pred CCCCc
Q 046742 471 LTNIK 475 (769)
Q Consensus 471 ~~~l~ 475 (769)
+|.++
T Consensus 122 ~Npv~ 126 (233)
T KOG1644|consen 122 GNPVE 126 (233)
T ss_pred CCchh
Confidence 55444
No 176
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.53 E-value=1.3e-05 Score=87.39 Aligned_cols=142 Identities=23% Similarity=0.308 Sum_probs=106.7
Q ss_pred EEecCCccccCCC-CCcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcc
Q 046742 375 FVQAGARLTEAPE-TGKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQ 453 (769)
Q Consensus 375 ~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 453 (769)
+...+..+..+.. ...+.+|++|++++|.+..+..+..++.|+.|++++|.++.+.. +..++.|+.+++++| .+..
T Consensus 100 l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n-~i~~ 176 (414)
T KOG0531|consen 100 LDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYN-RIVD 176 (414)
T ss_pred eeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC--CccchhhhcccCCcc-hhhh
Confidence 4445556666666 77788999999999999999999999999999999999998876 677999999999999 5656
Q ss_pred cccc-ccCCcCCCEEeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcc--cceeeeeccccc
Q 046742 454 LPSG-ISRLVSLQHLNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSM--LYILRIVDCHYF 523 (769)
Q Consensus 454 lp~~-i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~--L~~L~l~~~~~~ 523 (769)
+... ...+.+|+.+.+.+|.+..+. .+..+..+..+++..|. +..+-. +..+.. |+.+++.+|.+.
T Consensus 177 ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~-i~~~~~--l~~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 177 IENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNK-ISKLEG--LNELVMLHLRELYLSGNRIS 245 (414)
T ss_pred hhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccccc-ceeccC--cccchhHHHHHHhcccCccc
Confidence 6543 578899999999999887653 34455555555777665 232221 223333 788888876653
No 177
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0019 Score=69.56 Aligned_cols=169 Identities=15% Similarity=0.127 Sum_probs=95.5
Q ss_pred CCCCCchHHHHHHHHHhcc------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 56 PQTLGLESTFDEVWRCLGE------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
..+=|.+..+.++.+++.. ..++-|.++||+|+|||.||+.++.+. . -. |+.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~--vP-----f~~isAp---- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-G--VP-----FLSISAP---- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-C--Cc-----eEeecch----
Confidence 3445889999988887732 245678899999999999999999998 2 22 3333322
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc--------c------------ccccCCCCCC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV--------D------------LEKLGIPPMN 183 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~------------~~~~~~~~~~ 183 (769)
+|...+ ..++.+.+.+.+.+....-++++++|+++-.. + ++.+... ..
T Consensus 258 ----eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~-~~ 325 (802)
T KOG0733|consen 258 ----EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNE-KT 325 (802)
T ss_pred ----hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccc-cc
Confidence 111111 33445555555556666789999999997431 1 1111111 11
Q ss_pred CCCCcEEEE-eeccCCccc----cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCc
Q 046742 184 TNGSSKIVF-TTRSAGGCG----LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGL 252 (769)
Q Consensus 184 ~~~~~~iiv-TtR~~~v~~----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 252 (769)
.+.+.-||- |+|-..+-. ..+-+.-|.+.--++..-.+++...+..-......+ .++|++.+-|.
T Consensus 326 ~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d----~~qlA~lTPGf 395 (802)
T KOG0733|consen 326 KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD----FKQLAKLTPGF 395 (802)
T ss_pred CCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC----HHHHHhcCCCc
Confidence 123322332 445433311 112345577777777777777776664333222333 44555655554
No 178
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.50 E-value=0.00032 Score=68.58 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=30.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEe
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVL 116 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 116 (769)
-.++|+|..|+||||++..+.... ...|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 467899999999999999999887 678888877754
No 179
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=2.2e-05 Score=76.47 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=28.7
Q ss_pred cCCccccccceecccccccccccCCCCCCCCCccEEEecCCCCCCCCCCC
Q 046742 681 RNLNPFARLELLILETLPKLKSIYPNALPFLHLKEIKVSNCPELKKLPLD 730 (769)
Q Consensus 681 ~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~c~~L~~L~l~ 730 (769)
+.+..|+.|.-|.+.+.|-+..+... -=+.|-|..+++++.|+=+
T Consensus 243 D~Ln~f~~l~dlRv~~~Pl~d~l~~~-----err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 243 DALNGFPQLVDLRVSENPLSDPLRGG-----ERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred HHHcCCchhheeeccCCcccccccCC-----cceEEEEeeccceEEecCc
Confidence 45677888888877776665554432 2244567777777777654
No 180
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.48 E-value=3.6e-05 Score=76.89 Aligned_cols=162 Identities=16% Similarity=0.113 Sum_probs=96.3
Q ss_pred CCcceeEEEEeeccccccc-----c-cCCCCCCCccEEEccCC----CCcccch------hhhcCCCcceEEEecCCCCC
Q 046742 388 TGKWQVIRRMSLMENQVQS-----L-SKIPSCPSLITLFLNNN----NLKVITD------GFFQFMPSLKVLNLSNNQSL 451 (769)
Q Consensus 388 ~~~~~~l~~L~l~~~~~~~-----~-~~~~~~~~L~~L~l~~~----~~~~~~~------~~~~~l~~L~~L~L~~~~~~ 451 (769)
......+..+++++|.+.. + +.+.+-+.|+..++++- ....+|+ ..+..+++|++||||.|-.-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3445578888888887632 1 11455567888777765 1123332 22455678888888888433
Q ss_pred cccc----ccccCCcCCCEEeccCCCCcccc--------------hhhhcCCCCcEEecCCCcCcCccCcc----cccCC
Q 046742 452 KQLP----SGISRLVSLQHLNLSLTNIKELP--------------EELKALVNLKCLNLDYTKSLCRIPRH----LISNF 509 (769)
Q Consensus 452 ~~lp----~~i~~l~~L~~L~l~~~~l~~lp--------------~~~~~l~~L~~L~l~~~~~l~~~p~~----~i~~L 509 (769)
...+ .-+..+..|++|.|.+|.+...- +-++.-++|+.+....|. +.+-+.. .+...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSH 184 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhc
Confidence 3333 23556788888888888765221 123445677777777775 5554432 24556
Q ss_pred cccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEeccc
Q 046742 510 SMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTSS 552 (769)
Q Consensus 510 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 552 (769)
+.|+.+.+..|.+-.. ........+..+++|+.|+++-+..
T Consensus 185 ~~leevr~~qN~I~~e--G~~al~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPE--GVTALAEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred cccceEEEecccccCc--hhHHHHHHHHhCCcceeeecccchh
Confidence 6777777776654322 1123345567777777777775443
No 181
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.47 E-value=0.00096 Score=66.67 Aligned_cols=169 Identities=15% Similarity=0.156 Sum_probs=101.7
Q ss_pred CCCCCchHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccH-HHHHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGE----EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQI-DRLQENIA 130 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~ 130 (769)
..++|-.++..++..++.+ +...-|.|+||.|.|||+|......+..+..++ ..-|...+.... .-.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHHHH
Confidence 5679999999999999864 456678899999999999988887774222333 334444433222 12344444
Q ss_pred HHh----CCCCcccccccHHHHHHHHHHHHcc------CCEEEEEecccCccc-------ccccCCCCCCCCCCcEEEEe
Q 046742 131 RKI----GLYDQSWKNKRLEIKAADIFKILSR------KKFVLLLDDIWNRVD-------LEKLGIPPMNTNGSSKIVFT 193 (769)
Q Consensus 131 ~~l----~~~~~~~~~~~~~~~~~~l~~~l~~------k~~LlVlDdv~~~~~-------~~~~~~~~~~~~~~~~iivT 193 (769)
+++ ..... ...+..+..+++.+.|+. -+++.|+|+++--.. +.-+...-....+-|-|-+|
T Consensus 101 rql~~e~~~~~k--~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 101 RQLALELNRIVK--SFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHhhhhe--eecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 444 32221 333444555666666643 358999998864211 11111111223455777789
Q ss_pred eccCCc-------cccccccceEEcCCCCHHHHHHHHHhhhCC
Q 046742 194 TRSAGG-------CGLMEAHRIFKVKCLEHKEAWELFQMKVGR 229 (769)
Q Consensus 194 tR~~~v-------~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~ 229 (769)
||-.-+ -....--.++-++.++-++..+++++.+.-
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~v 221 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLSV 221 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhcC
Confidence 996422 122222345677888899999999887743
No 182
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.46 E-value=0.0018 Score=68.01 Aligned_cols=160 Identities=8% Similarity=-0.024 Sum_probs=83.9
Q ss_pred CCC-chHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCC
Q 046742 58 TLG-LESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGL 135 (769)
Q Consensus 58 ~vG-r~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 135 (769)
++| .+..++.+.+.+..++.+ ...++|+.|+||||+|+.+++..-- .+..... .+ +.-...+.+... ..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c-~~~~~~~---~c----g~C~~c~~~~~~-~h 77 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC-LERNGVE---PC----GTCTNCKRIDSG-NH 77 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCC---CC----CcCHHHHHHhcC-CC
Confidence 456 777888888888776544 5589999999999999999887611 1100000 00 000000100000 00
Q ss_pred CC-----cccccccHHHHHHHHHHH----HccCCEEEEEecccCccc--ccccCCCCCCCCCCcEEEEeeccC-Cccccc
Q 046742 136 YD-----QSWKNKRLEIKAADIFKI----LSRKKFVLLLDDIWNRVD--LEKLGIPPMNTNGSSKIVFTTRSA-GGCGLM 203 (769)
Q Consensus 136 ~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~iivTtR~~-~v~~~~ 203 (769)
++ ........++..+.+... ..+++-++|+|+++.... ...+...+..-..++.+|++|.+. .+....
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 00 000111122222222111 234556899999875432 222222232233456677666653 333222
Q ss_pred -cccceEEcCCCCHHHHHHHHHhh
Q 046742 204 -EAHRIFKVKCLEHKEAWELFQMK 226 (769)
Q Consensus 204 -~~~~~~~l~~l~~~~a~~l~~~~ 226 (769)
.....+++.+++.++..+.+...
T Consensus 158 rSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 158 LSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HhhceeeeCCCCCHHHHHHHHHHc
Confidence 33467999999999998888653
No 183
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.45 E-value=0.0017 Score=69.74 Aligned_cols=165 Identities=20% Similarity=0.173 Sum_probs=98.6
Q ss_pred CchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc-cHHHHHHHHHHHhCCCCc
Q 046742 60 GLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL-QIDRLQENIARKIGLYDQ 138 (769)
Q Consensus 60 Gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~ 138 (769)
.|...+.++.+.+..... ++.|.|+=++||||+++.+..... +. ++++..-+.. +...+ .+..
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~---~~---~iy~~~~d~~~~~~~l-~d~~-------- 84 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL---EE---IIYINFDDLRLDRIEL-LDLL-------- 84 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC---cc---eEEEEecchhcchhhH-HHHH--------
Confidence 344556666666654433 999999999999999987777762 22 4555433221 11111 1111
Q ss_pred ccccccHHHHHHHHHHHHccCCEEEEEecccCcccccccCCCCCCCCCCcEEEEeeccCCcccc------ccccceEEcC
Q 046742 139 SWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVDLEKLGIPPMNTNGSSKIVFTTRSAGGCGL------MEAHRIFKVK 212 (769)
Q Consensus 139 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~iivTtR~~~v~~~------~~~~~~~~l~ 212 (769)
..+.+.-..++..++||.|....+|+.....+.+.++. +|++|+-+...... .+....+++-
T Consensus 85 -----------~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~ 152 (398)
T COG1373 85 -----------RAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELY 152 (398)
T ss_pred -----------HHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEEC
Confidence 11111111277899999999999988876666666555 78888776544221 1335678999
Q ss_pred CCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHH
Q 046742 213 CLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITI 259 (769)
Q Consensus 213 ~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 259 (769)
||+..|-..+-. ...... ..+..-+-.-..||.|-++..-
T Consensus 153 PlSF~Efl~~~~-----~~~~~~--~~~~~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 153 PLSFREFLKLKG-----EEIEPS--KLELLFEKYLETGGFPESVKAD 192 (398)
T ss_pred CCCHHHHHhhcc-----cccchh--HHHHHHHHHHHhCCCcHHHhCc
Confidence 999999877654 000000 1111223333568999877553
No 184
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.45 E-value=8.9e-05 Score=84.60 Aligned_cols=102 Identities=25% Similarity=0.366 Sum_probs=60.9
Q ss_pred eEEEEeeccccccc--ccC--CCCCCCccEEEccCCCCccc-chhhhcCCCcceEEEecCCCCCccccccccCCcCCCEE
Q 046742 393 VIRRMSLMENQVQS--LSK--IPSCPSLITLFLNNNNLKVI-TDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHL 467 (769)
Q Consensus 393 ~l~~L~l~~~~~~~--~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 467 (769)
+|++|++++...-. .+. ..-+|.|+.|.+.+-.+..- ......++++|+.||+|++ .++.+ ..+++|++||.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHH
Confidence 78888887754311 111 24567777777776544211 1222456677777777777 56555 467777777777
Q ss_pred eccCCCCcccc--hhhhcCCCCcEEecCCCc
Q 046742 468 NLSLTNIKELP--EELKALVNLKCLNLDYTK 496 (769)
Q Consensus 468 ~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~ 496 (769)
.+++=.+..-. ..+.+|++|+.||++...
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 77665554322 345667777777776654
No 185
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.44 E-value=0.0015 Score=62.75 Aligned_cols=170 Identities=13% Similarity=0.153 Sum_probs=100.9
Q ss_pred CCCCCchHHHHH---HHHHhccC------CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHH
Q 046742 56 PQTLGLESTFDE---VWRCLGEE------HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQ 126 (769)
Q Consensus 56 ~~~vGr~~~~~~---l~~~L~~~------~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 126 (769)
+.+||.|+...+ |++.|.++ .++-|..+|++|.|||-+|+.+++.. .-.| +-| ...+++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~---l~v------kat~li 188 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL---LLV------KATELI 188 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce---EEe------chHHHH
Confidence 455898887665 56677652 46789999999999999999999987 2222 222 122222
Q ss_pred HHHHHHhCCCCcccccccHHHHHHHHHHHHc-cCCEEEEEecccCcc----------c----ccccCCCCC--CCCCCcE
Q 046742 127 ENIARKIGLYDQSWKNKRLEIKAADIFKILS-RKKFVLLLDDIWNRV----------D----LEKLGIPPM--NTNGSSK 189 (769)
Q Consensus 127 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~----------~----~~~~~~~~~--~~~~~~~ 189 (769)
. +.. .+....+..+.++.+ .-++++.+|.++... | ...+...+. ..+.|..
T Consensus 189 G---ehV---------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 189 G---EHV---------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred H---HHh---------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 2 222 223334455555443 368999999876421 1 112211121 2456777
Q ss_pred EEEeeccCCccccc---cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 190 IVFTTRSAGGCGLM---EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 190 iivTtR~~~v~~~~---~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
.|-.|.+.++.... +-..-++..--+++|-.+++...+..-. .....-.+.++.+.+|+.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P----lpv~~~~~~~~~~t~g~S 319 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP----LPVDADLRYLAAKTKGMS 319 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC----CccccCHHHHHHHhCCCC
Confidence 77777776654321 1234577777788999999888774322 112233666777777764
No 186
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=5.1e-05 Score=73.96 Aligned_cols=97 Identities=24% Similarity=0.286 Sum_probs=59.5
Q ss_pred EEeecccccccccCC----CCCCCccEEEccCCCCcccc--hhhhcCCCcceEEEecCCCCC---ccccccccCCcCCCE
Q 046742 396 RMSLMENQVQSLSKI----PSCPSLITLFLNNNNLKVIT--DGFFQFMPSLKVLNLSNNQSL---KQLPSGISRLVSLQH 466 (769)
Q Consensus 396 ~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~---~~lp~~i~~l~~L~~ 466 (769)
.+.+.++.+.....+ ..++.++.|+|.+|.+.... ..++.+||+|++|+|+.|... +.+| -.+.+|+.
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~ 125 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRV 125 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEE
Confidence 444555555433221 45677888888888776433 234677888888888877322 2233 34567788
Q ss_pred EeccCCCCc--ccchhhhcCCCCcEEecCCC
Q 046742 467 LNLSLTNIK--ELPEELKALVNLKCLNLDYT 495 (769)
Q Consensus 467 L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~ 495 (769)
|-|.++.+. ..-..+..++.++.|+++.|
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 888777554 44445666777777766666
No 187
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00091 Score=66.31 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=49.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccC-CCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSN-TPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFK 154 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 154 (769)
..++|.++||+|.|||+|.+++++.++- ..+.|....-+.+.. ..++.. .++- .++-...+-.++.+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSK---WFsE-----SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSK---WFSE-----SGKLVAKMFQKIQE 243 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHH---HHhh-----hhhHHHHHHHHHHH
Confidence 3568899999999999999999998832 223333333333222 122221 1211 23445555666666
Q ss_pred HHccCC--EEEEEecccC
Q 046742 155 ILSRKK--FVLLLDDIWN 170 (769)
Q Consensus 155 ~l~~k~--~LlVlDdv~~ 170 (769)
.+.++. +.+.+|+|++
T Consensus 244 Lv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHhCCCcEEEEEeHHHHH
Confidence 666554 4566888864
No 188
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.41 E-value=3e-05 Score=66.77 Aligned_cols=87 Identities=29% Similarity=0.419 Sum_probs=78.9
Q ss_pred eEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEecc
Q 046742 393 VIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLS 470 (769)
Q Consensus 393 ~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~ 470 (769)
++...++++|.++.+|. ..+++.+++|++++|.+..+|.. +..++.|+.|++++| .+...|.-+..|.+|-+|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcCC
Confidence 78889999999999887 36778999999999999999988 899999999999999 788889888889999999999
Q ss_pred CCCCcccchhh
Q 046742 471 LTNIKELPEEL 481 (769)
Q Consensus 471 ~~~l~~lp~~~ 481 (769)
+|.+.++|-++
T Consensus 132 ~na~~eid~dl 142 (177)
T KOG4579|consen 132 ENARAEIDVDL 142 (177)
T ss_pred CCccccCcHHH
Confidence 99999888763
No 189
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0042 Score=66.96 Aligned_cols=146 Identities=14% Similarity=0.068 Sum_probs=87.0
Q ss_pred CchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHH
Q 046742 60 GLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQ 126 (769)
Q Consensus 60 Gr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 126 (769)
|.++...++...+.. ..+.-|.++||+|+|||-||++|++.. +-.| +.+....
T Consensus 515 aL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGPE------ 580 (802)
T KOG0733|consen 515 ALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGPE------ 580 (802)
T ss_pred cHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCHH------
Confidence 455555666555532 235578899999999999999999997 3444 4443331
Q ss_pred HHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc-------------cccccCCCCC--CCCCCcEEE
Q 046742 127 ENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV-------------DLEKLGIPPM--NTNGSSKIV 191 (769)
Q Consensus 127 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~~~~~~~--~~~~~~~ii 191 (769)
++... ..++.......+++.=..-+++|.||.++... .+..+..-+. ....|.-||
T Consensus 581 --LlNkY-------VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~vi 651 (802)
T KOG0733|consen 581 --LLNKY-------VGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVI 651 (802)
T ss_pred --HHHHH-------hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEE
Confidence 11111 22333333444444444579999999987531 1222222222 233465666
Q ss_pred EeeccCCcc-----ccccccceEEcCCCCHHHHHHHHHhhhC
Q 046742 192 FTTRSAGGC-----GLMEAHRIFKVKCLEHKEAWELFQMKVG 228 (769)
Q Consensus 192 vTtR~~~v~-----~~~~~~~~~~l~~l~~~~a~~l~~~~~~ 228 (769)
-.|..+++- +-.+-+..+-++.-+.+|-.++++....
T Consensus 652 aATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 652 AATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred eecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence 666655542 2223456778888889999999988876
No 190
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.40 E-value=0.00056 Score=65.68 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=56.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCCccc-ccccHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYDQSW-KNKRLEIKAADIFK 154 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 154 (769)
+++++++|+.|+||||.+.+++..+. .+ -..+..++.... ....+-++..++.++++.... ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~-~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK-LK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH-HT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh-hc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 46899999999999999999888873 22 345677776543 356777888888888653211 22234444444444
Q ss_pred HHccCC-EEEEEecc
Q 046742 155 ILSRKK-FVLLLDDI 168 (769)
Q Consensus 155 ~l~~k~-~LlVlDdv 168 (769)
.++.++ =++++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 444443 37777765
No 191
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0027 Score=69.29 Aligned_cols=171 Identities=18% Similarity=0.119 Sum_probs=91.4
Q ss_pred CCCCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccH
Q 046742 56 PQTLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQI 122 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 122 (769)
..+=|.|+...+|.+.+.- +.++-|.++||+|+|||++|+.+++.. .-.|- .+...
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nFl-----svkgp--- 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNFL-----SVKGP--- 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCee-----eccCH---
Confidence 3344688777777766531 456789999999999999999999987 44442 22221
Q ss_pred HHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc-------------ccccCCCCCCC-CCCc
Q 046742 123 DRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD-------------LEKLGIPPMNT-NGSS 188 (769)
Q Consensus 123 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~~~~~-~~~~ 188 (769)
+++. . +...+...+.+.+.+.=+--+.++.||+++...- +..+...+... ..+.
T Consensus 503 -EL~s----k-------~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 503 -ELFS----K-------YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred -HHHH----H-------hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 0100 0 0112222222222222233568888888764310 11111112111 1123
Q ss_pred EEEE--eeccCCc----cccccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 189 KIVF--TTRSAGG----CGLMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 189 ~iiv--TtR~~~v----~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
.+|+ |-|...+ .+-.+-+..+.++.-+.+.-.++|+..+..-.....-+ .+++++++.|.-
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vd----l~~La~~T~g~S 637 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVD----LEELAQATEGYS 637 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcccc----HHHHHHHhccCC
Confidence 3333 2332222 11113456788888888888999999886544333333 345555555554
No 192
>PRK07261 topology modulation protein; Provisional
Probab=97.37 E-value=0.00063 Score=64.00 Aligned_cols=67 Identities=19% Similarity=0.362 Sum_probs=41.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHcc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSR 158 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 158 (769)
.|+|+|++|+||||||+++.....-..-+.|...|-.. +...+.++....+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 58899999999999999998876111123445555211 1223344555556666666
Q ss_pred CCEEEEEecccC
Q 046742 159 KKFVLLLDDIWN 170 (769)
Q Consensus 159 k~~LlVlDdv~~ 170 (769)
.+ .|+|+...
T Consensus 59 ~~--wIidg~~~ 68 (171)
T PRK07261 59 HD--WIIDGNYS 68 (171)
T ss_pred CC--EEEcCcch
Confidence 55 57777643
No 193
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.36 E-value=0.00045 Score=65.07 Aligned_cols=64 Identities=17% Similarity=0.114 Sum_probs=49.1
Q ss_pred CCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL 120 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 120 (769)
...||-|+.++++.-...+.+.+-+.|.||+|+||||-+..+++.+- -..+-+.+.-.+.|.+.
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL-G~~~ke~vLELNASdeR 90 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL-GDSYKEAVLELNASDER 90 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHh-ChhhhhHhhhccCcccc
Confidence 56799999999998888888889999999999999999999998872 11223344444444443
No 194
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.35 E-value=0.006 Score=63.17 Aligned_cols=175 Identities=10% Similarity=0.020 Sum_probs=93.5
Q ss_pred HHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHhhccC-CCC--CCcEE----EEEEeCccccHHHHHHHHHHHhC
Q 046742 63 STFDEVWRCLGEEHV-GIIGLYGMGEVGKTTLLTRINNKFSN-TPN--GFDFV----IWVVLSRDLQIDRLQENIARKIG 134 (769)
Q Consensus 63 ~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~~~~~~~~-~~~--~f~~~----~wv~~~~~~~~~~~~~~i~~~l~ 134 (769)
...+.+.+.+..++. +...++|+.|+||+++|+.++..+-- ... ...+. .++..+..+|+..+
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------- 79 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------- 79 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE---------
Confidence 345667777776654 56678999999999999999887611 100 00000 00000111111000
Q ss_pred CCCcccccccHHHHHHHHHHHH-----ccCCEEEEEecccCccc--ccccCCCCCCCCCCcEEEEeeccC-Ccccc-ccc
Q 046742 135 LYDQSWKNKRLEIKAADIFKIL-----SRKKFVLLLDDIWNRVD--LEKLGIPPMNTNGSSKIVFTTRSA-GGCGL-MEA 205 (769)
Q Consensus 135 ~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~iivTtR~~-~v~~~-~~~ 205 (769)
.........+++..+ +.+.+ .+++-++|+|+++.... -..+.-.+-.-..++.+|++|.+. .+... ...
T Consensus 80 -~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 80 -EPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred -ccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 000001112333322 22222 24566889999986532 122211122223355666666654 44433 233
Q ss_pred cceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHH
Q 046742 206 HRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLAL 256 (769)
Q Consensus 206 ~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 256 (769)
...+.+.+++.+++.+.+....... .+.+...++.++|.|..+
T Consensus 158 C~~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred ceEEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 5689999999999999988764211 223667788999999644
No 195
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.35 E-value=0.0011 Score=72.49 Aligned_cols=173 Identities=14% Similarity=0.050 Sum_probs=91.8
Q ss_pred CCCCCchHHHHHHHHHhc---c-------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHH
Q 046742 56 PQTLGLESTFDEVWRCLG---E-------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRL 125 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~---~-------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 125 (769)
..+.|.+..++.+.+... . ...+-|.++|++|+|||.+|+.+++.. .-.| +-++.+ .+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~l 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------KL 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------Hh
Confidence 345687776666654221 0 235678899999999999999999987 2222 122211 11
Q ss_pred HHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc--------------ccccCCCCCCCCCCcEEE
Q 046742 126 QENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD--------------LEKLGIPPMNTNGSSKIV 191 (769)
Q Consensus 126 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~~~~~~~~~~~~~~ii 191 (769)
+. .. ...+...+...+...-...+++|++|+++..-. +..+...+.....+.-||
T Consensus 296 ~~----~~-------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 296 FG----GI-------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred cc----cc-------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 11 00 111122222222222234789999999974210 000111111122334455
Q ss_pred EeeccCCc-----cccccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 192 FTTRSAGG-----CGLMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 192 vTtR~~~v-----~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
.||.+.+. ....+-+..+.++.-+.++-.++|+..+....... ......+.+++.+.|.-
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~--~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKS--WKKYDIKKLSKLSNKFS 429 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCc--ccccCHHHHHhhcCCCC
Confidence 56665432 12223456788999999999999988775432111 01223566677776655
No 196
>PRK08181 transposase; Validated
Probab=97.35 E-value=0.00044 Score=69.63 Aligned_cols=78 Identities=24% Similarity=0.283 Sum_probs=46.9
Q ss_pred HHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHH
Q 046742 70 RCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKA 149 (769)
Q Consensus 70 ~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 149 (769)
+|+.. ...+.++|++|+|||.||..+++... ...+ .++|+ +..+++..+..... ..+.+.
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~--~~g~-~v~f~------~~~~L~~~l~~a~~-------~~~~~~-- 160 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALI--ENGW-RVLFT------RTTDLVQKLQVARR-------ELQLES-- 160 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHH--HcCC-ceeee------eHHHHHHHHHHHHh-------CCcHHH--
Confidence 45542 34588999999999999999998873 2222 34565 34556665544321 112222
Q ss_pred HHHHHHHccCCEEEEEecccC
Q 046742 150 ADIFKILSRKKFVLLLDDIWN 170 (769)
Q Consensus 150 ~~l~~~l~~k~~LlVlDdv~~ 170 (769)
+.+.+. +.=||||||+..
T Consensus 161 --~l~~l~-~~dLLIIDDlg~ 178 (269)
T PRK08181 161 --AIAKLD-KFDLLILDDLAY 178 (269)
T ss_pred --HHHHHh-cCCEEEEecccc
Confidence 222222 334999999953
No 197
>PRK12377 putative replication protein; Provisional
Probab=97.33 E-value=0.0016 Score=64.66 Aligned_cols=75 Identities=21% Similarity=0.170 Sum_probs=46.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKI 155 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 155 (769)
+...+.++|+.|+|||.||..+++... .....+++++ ..+++..+...... ..... .+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~------~~~l~~~l~~~~~~------~~~~~----~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVT------VPDVMSRLHESYDN------GQSGE----KFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEE------HHHHHHHHHHHHhc------cchHH----HHHHH
Confidence 346789999999999999999999983 2223356663 34455555444321 11111 22223
Q ss_pred HccCCEEEEEecccC
Q 046742 156 LSRKKFVLLLDDIWN 170 (769)
Q Consensus 156 l~~k~~LlVlDdv~~ 170 (769)
+ .+-=||||||+..
T Consensus 161 l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 161 L-CKVDLLVLDEIGI 174 (248)
T ss_pred h-cCCCEEEEcCCCC
Confidence 3 3455999999943
No 198
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0024 Score=67.51 Aligned_cols=160 Identities=18% Similarity=0.118 Sum_probs=92.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKI 155 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 155 (769)
+...+.+.|++|+|||+||.+++..- .|..+--++ .+++ .+.. .......+...+.+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiS------pe~m-------iG~s----EsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIIS------PEDM-------IGLS----ESAKCAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeC------hHHc-------cCcc----HHHHHHHHHHHHHHh
Confidence 34457789999999999999999863 455433331 1111 1111 111222333444455
Q ss_pred HccCCEEEEEecccCcccccccCCC---------------CCCCCCCcEEEEeeccCCccccccc----cceEEcCCCCH
Q 046742 156 LSRKKFVLLLDDIWNRVDLEKLGIP---------------PMNTNGSSKIVFTTRSAGGCGLMEA----HRIFKVKCLEH 216 (769)
Q Consensus 156 l~~k~~LlVlDdv~~~~~~~~~~~~---------------~~~~~~~~~iivTtR~~~v~~~~~~----~~~~~l~~l~~ 216 (769)
.+..--.||+||++..-||-.++.. .|+.++.--|+-||....+.+.++- ...++++.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 5667789999999887776665432 2233333444457776777665542 34689999987
Q ss_pred -HHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHHHh
Q 046742 217 -KEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGRAM 263 (769)
Q Consensus 217 -~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 263 (769)
++..+.++..-.- .+......+++...++ +-.+|+.+-.++
T Consensus 675 ~~~~~~vl~~~n~f----sd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 675 GEQLLEVLEELNIF----SDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred hHHHHHHHHHccCC----CcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 7888887765311 1223345555555555 334455444444
No 199
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.32 E-value=0.0027 Score=74.52 Aligned_cols=171 Identities=15% Similarity=0.113 Sum_probs=95.0
Q ss_pred CCCCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccH
Q 046742 56 PQTLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQI 122 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 122 (769)
..+.|.+..+++|.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~~--- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRGP--- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEehH---
Confidence 4457888888888776531 234568899999999999999999987 2333 222211
Q ss_pred HHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc--------------ccccCCCCCC--CCC
Q 046742 123 DRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD--------------LEKLGIPPMN--TNG 186 (769)
Q Consensus 123 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~~~~~~~~--~~~ 186 (769)
++ .... .......+...+...-...+.+|+||+++.... ...+...+.. ...
T Consensus 522 -~l----~~~~-------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 522 -EI----LSKW-------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred -HH----hhcc-------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 11 1111 112222222223333345679999999864210 1111111111 223
Q ss_pred CcEEEEeeccCCccc-----cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 187 SSKIVFTTRSAGGCG-----LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 187 ~~~iivTtR~~~v~~-----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
+..||.||...+... ..+-+..+.++..+.++-.++|+............ ..+.+++.+.|.-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~----~l~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV----DLEELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC----CHHHHHHHcCCCC
Confidence 445555665544321 11335678899999999999997665433211221 2456777777654
No 200
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.31 E-value=0.0056 Score=62.07 Aligned_cols=55 Identities=24% Similarity=0.213 Sum_probs=35.6
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHH
Q 046742 64 TFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQ 126 (769)
Q Consensus 64 ~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 126 (769)
-++++..++..+ ..|.+.|++|+|||++|+.++... ... .+.+++....+..+++
T Consensus 10 l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~~---~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DRP---VMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CCC---EEEEeCCccCCHHHHh
Confidence 344555555433 356699999999999999999865 222 3455655554544444
No 201
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.30 E-value=0.002 Score=70.07 Aligned_cols=184 Identities=14% Similarity=0.153 Sum_probs=109.9
Q ss_pred CCCCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhccCCC----CCCcEEEEEEeCccccHHHHHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFSNTP----NGFDFVIWVVLSRDLQIDRLQENIA 130 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~ 130 (769)
+++||.+.....|.+.+..++.. .-...|+-|+||||+|+-++..+ .=. ..+...+-. .++|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~Akal-NC~~~~~~ePC~~C~~-----------Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKAL-NCENGPTAEPCGKCIS-----------CKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHh-cCCCCCCCCcchhhhh-----------hHhhh
Confidence 56799999999999999877644 34578999999999999999876 211 111111111 12222
Q ss_pred HH--hCCCC-cccccccHHHHHHHHHHHH-----ccCCEEEEEecccC--cccccccCCCCCCCCCCcEEEEeeccC-Cc
Q 046742 131 RK--IGLYD-QSWKNKRLEIKAADIFKIL-----SRKKFVLLLDDIWN--RVDLEKLGIPPMNTNGSSKIVFTTRSA-GG 199 (769)
Q Consensus 131 ~~--l~~~~-~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~~~~~~~~~~~~~~iivTtR~~-~v 199 (769)
.- .++.. +......+++..+ +.+.. +++--+.|+|+|+- ...+..+.--+-.-..+.+.|+.|++. .+
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~-i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIRE-IIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred cCCcccchhhhhhhccChHHHHH-HHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 11 00000 0001112222221 22222 34555999999973 344554433333333456666666654 33
Q ss_pred c-ccccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhH
Q 046742 200 C-GLMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLA 255 (769)
Q Consensus 200 ~-~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 255 (769)
. ......+.|.+..++.++....+...+..+.... ..+....|++..+|...-
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~---e~~aL~~ia~~a~Gs~RD 216 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI---EEDALSLIARAAEGSLRD 216 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHhcCCcc---CHHHHHHHHHHcCCChhh
Confidence 2 2334557899999999999999999987666333 267778888888886653
No 202
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.29 E-value=0.01 Score=65.32 Aligned_cols=195 Identities=15% Similarity=0.044 Sum_probs=118.3
Q ss_pred CCCCchHHHHHHHHHhc----c-CCccEEEEEcCCCCcHHHHHHHHHhhccC-----CCCCCcEEEEEEeCccccHHHHH
Q 046742 57 QTLGLESTFDEVWRCLG----E-EHVGIIGLYGMGEVGKTTLLTRINNKFSN-----TPNGFDFVIWVVLSRDLQIDRLQ 126 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~----~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-----~~~~f~~~~wv~~~~~~~~~~~~ 126 (769)
.+=+||.|..+|-+.+. + ...+.+.|.|-+|+|||..+..|.+.+.+ .-..|+ .+.|+.-.-....+++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHH
Confidence 34589999999988874 2 33448999999999999999999986621 123454 3566666667899999
Q ss_pred HHHHHHhCCCCcccccccHHHHHHHHHHHHc-----cCCEEEEEecccCc-----ccccccCCCCCCCCCCcEEEEeecc
Q 046742 127 ENIARKIGLYDQSWKNKRLEIKAADIFKILS-----RKKFVLLLDDIWNR-----VDLEKLGIPPMNTNGSSKIVFTTRS 196 (769)
Q Consensus 127 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~-----~~~~~~~~~~~~~~~~~~iivTtR~ 196 (769)
..|..++.... ..-....+.+..++. .+..++++|+++.. +.+..+.. ....+++|++|-+=.
T Consensus 476 ~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fd--Wpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 476 EKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFD--WPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhc--CCcCCCCceEEEEec
Confidence 99999997643 233344444555443 35689999998643 22222211 123456666654321
Q ss_pred --CCccccc--------cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHH
Q 046742 197 --AGGCGLM--------EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITI 259 (769)
Q Consensus 197 --~~v~~~~--------~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 259 (769)
-++.+.+ -....+...|.+.++-.++...++.....-.....+=++++|+...|..-.|+.+.
T Consensus 549 NTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred ccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 1111110 12346788889999988888777654431122222334445555555555554444
No 203
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.29 E-value=0.00039 Score=66.40 Aligned_cols=128 Identities=15% Similarity=0.140 Sum_probs=62.7
Q ss_pred chHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc----c---------ccHHHHHH
Q 046742 61 LESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR----D---------LQIDRLQE 127 (769)
Q Consensus 61 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~----~---------~~~~~~~~ 127 (769)
+..+....++.|. ...+|.+.|++|+|||.||.+.+-+. -..+.|+.++++.-.- + ......+.
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTTH
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 4455556666666 44699999999999999999998766 3358888888874211 1 01111122
Q ss_pred HHHHHhCCCCcccccccHHHHHHHH------HHHHccC---CEEEEEecccCc--ccccccCCCCCCCCCCcEEEEeecc
Q 046742 128 NIARKIGLYDQSWKNKRLEIKAADI------FKILSRK---KFVLLLDDIWNR--VDLEKLGIPPMNTNGSSKIVFTTRS 196 (769)
Q Consensus 128 ~i~~~l~~~~~~~~~~~~~~~~~~l------~~~l~~k---~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~iivTtR~ 196 (769)
-+.+.+..-. .....+...+.= ..+++|+ ..++|+|++.+. +++..+ +-..+.|||+|++--.
T Consensus 82 p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 82 PIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEEEE--
T ss_pred HHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEEecCc
Confidence 2222222110 111111111100 1233443 469999999875 345554 2334678999998554
Q ss_pred C
Q 046742 197 A 197 (769)
Q Consensus 197 ~ 197 (769)
.
T Consensus 156 ~ 156 (205)
T PF02562_consen 156 S 156 (205)
T ss_dssp -
T ss_pred e
Confidence 3
No 204
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.29 E-value=0.0011 Score=61.74 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=34.0
Q ss_pred CchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 60 GLESTFDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 60 Gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
|.++..+.|.+.+..++.+ .+.++|+.|+||+++|..++..+
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 6677888888888776654 57899999999999999998876
No 205
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.28 E-value=0.0012 Score=64.16 Aligned_cols=210 Identities=11% Similarity=0.114 Sum_probs=118.8
Q ss_pred CCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccC---CCCCCcEEEEEEeCcc-------------
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSN---TPNGFDFVIWVVLSRD------------- 119 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~------------- 119 (769)
+...++++.-+++.+...+.+.+...++|++|.||-|.+-.+.+++=. .+-.-+..-|.+.+..
T Consensus 13 ~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred hhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 456788888888888888777889999999999998877776665511 0112233444432221
Q ss_pred --------ccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCE-EEEEecccCc--ccccccCCCCCCCCCCc
Q 046742 120 --------LQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKF-VLLLDDIWNR--VDLEKLGIPPMNTNGSS 188 (769)
Q Consensus 120 --------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~--~~~~~~~~~~~~~~~~~ 188 (769)
..-.-+.+++++.+.-.. ..+ .-.++.| ++|+-.+++. +.-..++.-.......+
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~------qie--------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQ------QIE--------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhc------chh--------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 001123333333332111 000 0012344 6666666643 12222221122234567
Q ss_pred EEEEeeccCC--ccccccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHHHhc--
Q 046742 189 KIVFTTRSAG--GCGLMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGRAMA-- 264 (769)
Q Consensus 189 ~iivTtR~~~--v~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~-- 264 (769)
|+|+...+-+ +...-...-.+++...+++|....+.+.+..+....+ .+++.+|+++++|.=.-.-.+-..++
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 8887544322 1111112346899999999999999999877664433 78999999999886543322222221
Q ss_pred CC--------CChhHHHHHHHHHHhc
Q 046742 265 FK--------KTPQEWKDAIQVLRRS 282 (769)
Q Consensus 265 ~~--------~~~~~w~~~l~~l~~~ 282 (769)
+. -+..+|+-++.++...
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHHH
Confidence 11 2446798888776654
No 206
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.28 E-value=0.0024 Score=66.48 Aligned_cols=105 Identities=15% Similarity=0.121 Sum_probs=64.1
Q ss_pred HHHHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcE-EEEEEeCc-cccHHHHHHHHHHHhCCCCc--
Q 046742 64 TFDEVWRCLGE-EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDF-VIWVVLSR-DLQIDRLQENIARKIGLYDQ-- 138 (769)
Q Consensus 64 ~~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~~~-- 138 (769)
...++++.+.. ..-..+.|+|..|+|||||++++++... .++-+. ++|+-+.. .....++.+.+...+.....
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 34456777753 2334668999999999999999999873 223333 46666554 45788888888876654221
Q ss_pred c-cccccHHHHHHHHHHHH--ccCCEEEEEecccC
Q 046742 139 S-WKNKRLEIKAADIFKIL--SRKKFVLLLDDIWN 170 (769)
Q Consensus 139 ~-~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~ 170 (769)
. ............+-+++ ++++++||+|++..
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 0 01111111122222222 47899999999854
No 207
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.27 E-value=0.0021 Score=75.46 Aligned_cols=171 Identities=15% Similarity=0.099 Sum_probs=92.7
Q ss_pred CCCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 57 QTLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
.+.|.+..++++.+++.- ...+.|.++|++|+|||++|+.+++.. ...| +.++.+
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~------ 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP------ 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH------
Confidence 357999999999887631 234568899999999999999999987 2222 223211
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc-------------ccccCCCCCC-CCCCcE
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD-------------LEKLGIPPMN-TNGSSK 189 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~~~~-~~~~~~ 189 (769)
.+.. .. ...........+.......+.+|+|||++.... ...+...+.. ...+..
T Consensus 247 ~i~~----~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 EIMS----KY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred HHhc----cc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 1110 00 111122223333333445678999999864210 1111111111 122334
Q ss_pred EEE-eeccCC-ccccc----cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchh
Q 046742 190 IVF-TTRSAG-GCGLM----EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPL 254 (769)
Q Consensus 190 iiv-TtR~~~-v~~~~----~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 254 (769)
+++ ||...+ +-... .-...+.++..+.++-.++++.......... ....+.+++.+.|.--
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~----d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE----DVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc----ccCHHHHHHhCCCCCH
Confidence 444 444322 11111 1234678888899988888886543222111 2235677888877653
No 208
>PRK08116 hypothetical protein; Validated
Probab=97.27 E-value=0.00043 Score=70.16 Aligned_cols=102 Identities=21% Similarity=0.169 Sum_probs=57.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILS 157 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 157 (769)
..+.++|..|+|||.||..+++.+. .....+++++ ..+++..+....... ...+ ...+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~----~~~~----~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSS----GKED----ENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhcc----cccc----HHHHHHHhc
Confidence 4588999999999999999999983 2223456663 455666665554321 1111 222334444
Q ss_pred cCCEEEEEecccCc--ccccc--cCCCCCC-CCCCcEEEEeeccC
Q 046742 158 RKKFVLLLDDIWNR--VDLEK--LGIPPMN-TNGSSKIVFTTRSA 197 (769)
Q Consensus 158 ~k~~LlVlDdv~~~--~~~~~--~~~~~~~-~~~~~~iivTtR~~ 197 (769)
+-. ||||||+... .+|.. +...+.. ...+..+|+||...
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 444 8999999432 22221 1111111 12345688888743
No 209
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.25 E-value=0.0032 Score=74.13 Aligned_cols=46 Identities=26% Similarity=0.311 Sum_probs=37.9
Q ss_pred CCCCCchHHHHHHHHHhcc------CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGE------EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+|.++.+++|.+++.. ...+++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3467999999999887631 234578999999999999999999987
No 210
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.01 Score=56.72 Aligned_cols=176 Identities=12% Similarity=0.163 Sum_probs=98.8
Q ss_pred C-CchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHH
Q 046742 59 L-GLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDR 124 (769)
Q Consensus 59 v-Gr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 124 (769)
| |.+..+.+|.+.+.- .+++-|.++|++|.|||-||+.|+++-. ..|+.++...-..+
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~--------c~firvsgselvqk 220 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--------CTFIRVSGSELVQK 220 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc--------eEEEEechHHHHHH
Confidence 5 567778888877631 3567889999999999999999999851 45667766522221
Q ss_pred HHHHHHHHhCCCCcccccccHHHHHHHHHHHH----ccCCEEEEEecccCcc------------ccc----ccCCCCC--
Q 046742 125 LQENIARKIGLYDQSWKNKRLEIKAADIFKIL----SRKKFVLLLDDIWNRV------------DLE----KLGIPPM-- 182 (769)
Q Consensus 125 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVlDdv~~~~------------~~~----~~~~~~~-- 182 (769)
.+.+ ....+++.+ ..-+.+|..|++++.. +.+ ++...+.
T Consensus 221 ~ige-------------------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgf 281 (404)
T KOG0728|consen 221 YIGE-------------------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGF 281 (404)
T ss_pred Hhhh-------------------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccc
Confidence 1110 011122211 2356788889887531 111 1111221
Q ss_pred CCCCCcEEEEeeccCCccc-----cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHH
Q 046742 183 NTNGSSKIVFTTRSAGGCG-----LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALI 257 (769)
Q Consensus 183 ~~~~~~~iivTtR~~~v~~-----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 257 (769)
...++-+||++|..-++.. -.+-+..++.++-+++.-.++++-..-.-+...--.+..+|+++.-..|---.++.
T Consensus 282 eatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vc 361 (404)
T KOG0728|consen 282 EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVC 361 (404)
T ss_pred ccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhh
Confidence 2245678888776655532 22345678889988888888887655333322223344444444333333333444
Q ss_pred HHHH
Q 046742 258 TIGR 261 (769)
Q Consensus 258 ~~~~ 261 (769)
+=|+
T Consensus 362 teag 365 (404)
T KOG0728|consen 362 TEAG 365 (404)
T ss_pred hhhh
Confidence 4444
No 211
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0037 Score=69.03 Aligned_cols=158 Identities=19% Similarity=0.176 Sum_probs=88.5
Q ss_pred CCCCCchHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLG------EEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENI 129 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 129 (769)
.+-.|.++..++|+++|. +-.-+++.++||+|+|||+|++.++... ...|- =+.++.-.|..++-..=
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkfv---R~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKFV---RISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCEE---EEecCccccHHHhcccc
Confidence 344899999999999983 1244799999999999999999999998 33332 22333333333221110
Q ss_pred HHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc------------------cccccCCCCCC-CCCCcEE
Q 046742 130 ARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV------------------DLEKLGIPPMN-TNGSSKI 190 (769)
Q Consensus 130 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------------~~~~~~~~~~~-~~~~~~i 190 (769)
--.+| .=+...+..+++ .+.+.=+++||.++... +-..|...... .-.=|+|
T Consensus 397 RTYIG--------amPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 397 RTYIG--------AMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ccccc--------cCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 00111 111112222222 23456688999986421 11111111100 0011334
Q ss_pred E-Eeecc-CC-c-cccccccceEEcCCCCHHHHHHHHHhhhC
Q 046742 191 V-FTTRS-AG-G-CGLMEAHRIFKVKCLEHKEAWELFQMKVG 228 (769)
Q Consensus 191 i-vTtR~-~~-v-~~~~~~~~~~~l~~l~~~~a~~l~~~~~~ 228 (769)
+ |||-| -+ + +..++...++++.+.+++|-.++-++++.
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 4 44443 22 2 23445668999999999999998887763
No 212
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.19 E-value=0.007 Score=63.95 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=33.8
Q ss_pred chHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 61 LESTFDEVWRCLGE---EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 61 r~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
|+...+.|.+.+.+ +...+|+|.|.-|+|||++.+.+.+.+
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34556677777765 467799999999999999999999998
No 213
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0096 Score=66.09 Aligned_cols=142 Identities=16% Similarity=0.087 Sum_probs=85.4
Q ss_pred CCCCCchHHHHHHHHHhcc---------C---CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 56 PQTLGLESTFDEVWRCLGE---------E---HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~---------~---~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
+++=|.|+.+.+|.+.+.- . ...-|.++|++|+|||-+|++|+-+.+ .-|+.|....
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs--------L~FlSVKGPE--- 740 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS--------LNFLSVKGPE--- 740 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--------eeEEeecCHH---
Confidence 5556899999999888742 1 244688999999999999999999973 4566665541
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc-----------c--------ccccCCCCCC-
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV-----------D--------LEKLGIPPMN- 183 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~--------~~~~~~~~~~- 183 (769)
++... ...+.+...+.+.+.=...+++|.||++++.. . +.++. -+.+
T Consensus 741 -----LLNMY-------VGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELD-gls~~ 807 (953)
T KOG0736|consen 741 -----LLNMY-------VGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELD-GLSDS 807 (953)
T ss_pred -----HHHHH-------hcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhh-cccCC
Confidence 11111 12233334444444444689999999997631 1 22221 1222
Q ss_pred CCCCcEEEEeeccCCccc-----cccccceEEcCCCCHHHHHH
Q 046742 184 TNGSSKIVFTTRSAGGCG-----LMEAHRIFKVKCLEHKEAWE 221 (769)
Q Consensus 184 ~~~~~~iivTtR~~~v~~-----~~~~~~~~~l~~l~~~~a~~ 221 (769)
...+.-||=+|..+++.+ -.+-++-+.+++=+.++.+.
T Consensus 808 ~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~ 850 (953)
T KOG0736|consen 808 SSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKL 850 (953)
T ss_pred CCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHH
Confidence 334555555666555532 12234556777766666554
No 214
>PRK06526 transposase; Provisional
Probab=97.12 E-value=0.00036 Score=69.85 Aligned_cols=74 Identities=20% Similarity=0.273 Sum_probs=43.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKI 155 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 155 (769)
+...+.|+|++|+|||+||..++.... ...+. +.|+ +..+++..+...... .... ..+.+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~--~~g~~-v~f~------t~~~l~~~l~~~~~~-------~~~~---~~l~~- 156 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRAC--QAGHR-VLFA------TAAQWVARLAAAHHA-------GRLQ---AELVK- 156 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHH--HCCCc-hhhh------hHHHHHHHHHHHHhc-------CcHH---HHHHH-
Confidence 345688999999999999999998863 22333 3443 444555555433211 1111 11222
Q ss_pred HccCCEEEEEecccC
Q 046742 156 LSRKKFVLLLDDIWN 170 (769)
Q Consensus 156 l~~k~~LlVlDdv~~ 170 (769)
+ .+.-+||+||+..
T Consensus 157 l-~~~dlLIIDD~g~ 170 (254)
T PRK06526 157 L-GRYPLLIVDEVGY 170 (254)
T ss_pred h-ccCCEEEEccccc
Confidence 2 2345899999964
No 215
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.086 Score=55.58 Aligned_cols=152 Identities=16% Similarity=0.105 Sum_probs=83.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILS 157 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 157 (769)
|--.++||+|.|||+++.++|+.+. |+. +=+..+.-.+-.+ ++.++.. .
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~-----ydI-ydLeLt~v~~n~d-Lr~LL~~------------------------t 284 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN-----YDI-YDLELTEVKLDSD-LRHLLLA------------------------T 284 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC-----Cce-EEeeeccccCcHH-HHHHHHh------------------------C
Confidence 3457999999999999999999972 432 2222211111111 2211111 1
Q ss_pred cCCEEEEEecccCccc-----------ccc---------cCCCCC--CCCC-CcEEEE-eeccCCcc-----ccccccce
Q 046742 158 RKKFVLLLDDIWNRVD-----------LEK---------LGIPPM--NTNG-SSKIVF-TTRSAGGC-----GLMEAHRI 208 (769)
Q Consensus 158 ~k~~LlVlDdv~~~~~-----------~~~---------~~~~~~--~~~~-~~~iiv-TtR~~~v~-----~~~~~~~~ 208 (769)
..+-+||+.|++-.-+ .+. +...+. +... +=|||| ||...+-. +..+-+..
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 3466788888763211 110 111111 1111 235655 66655432 22234457
Q ss_pred EEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHH-HHhcCC
Q 046742 209 FKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIG-RAMAFK 266 (769)
Q Consensus 209 ~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~-~~l~~~ 266 (769)
+.|+.=+.+....|+.+.++.+. ...++.+|.+...|.-+.=..++ .+|.++
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~~------~h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIEE------DHRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCCC------CcchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 89999999999999999987643 13566666666666655444444 445554
No 216
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.12 E-value=0.0015 Score=67.59 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=40.1
Q ss_pred CCCCchHHHHHHHHHhcc------CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 57 QTLGLESTFDEVWRCLGE------EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.++|.++.++++++++.. ...++++++|++|+||||||..+++.+
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999953 245789999999999999999999988
No 217
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.11 E-value=0.015 Score=60.12 Aligned_cols=176 Identities=10% Similarity=0.001 Sum_probs=92.7
Q ss_pred hHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCC---
Q 046742 62 ESTFDEVWRCLGEEH-VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYD--- 137 (769)
Q Consensus 62 ~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--- 137 (769)
+...+++.+.+..++ .+.+.++|+.|+||+++|+.++...--...... .++ .-...+.+... .-++
T Consensus 9 ~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~-----~Cg----~C~sC~~~~~g-~HPD~~~ 78 (319)
T PRK06090 9 VPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE-----ACG----FCHSCELMQSG-NHPDLHV 78 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-----CCC----CCHHHHHHHcC-CCCCEEE
Confidence 344566777776665 446889999999999999999887611000000 000 00001111000 0000
Q ss_pred ---c-ccccccHHHHHHHHHHHH-----ccCCEEEEEecccCccc--ccccCCCCCCCCCCcEEEEeecc-CCccccc-c
Q 046742 138 ---Q-SWKNKRLEIKAADIFKIL-----SRKKFVLLLDDIWNRVD--LEKLGIPPMNTNGSSKIVFTTRS-AGGCGLM-E 204 (769)
Q Consensus 138 ---~-~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~iivTtR~-~~v~~~~-~ 204 (769)
. ......+++..+ +.+.+ .++.-++|+|+++.... ...+.-.+..-..++.+|++|.+ ..+.... .
T Consensus 79 i~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 79 IKPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred EecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 0 001122333322 22222 24456899999976421 12221112222234556655554 3443332 3
Q ss_pred ccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHH
Q 046742 205 AHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITI 259 (769)
Q Consensus 205 ~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 259 (769)
....+.+.+++.+++.+.+..... + .+..+++.++|.|+.+..+
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~~------~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 158 RCQQWVVTPPSTAQAMQWLKGQGI------T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred cceeEeCCCCCHHHHHHHHHHcCC------c-----hHHHHHHHcCCCHHHHHHH
Confidence 346789999999999998865311 0 2356789999999876554
No 218
>PRK09183 transposase/IS protein; Provisional
Probab=97.09 E-value=0.00069 Score=68.34 Aligned_cols=25 Identities=32% Similarity=0.274 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+.|+|++|+|||+||..++...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3467799999999999999998875
No 219
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.09 E-value=0.0032 Score=73.42 Aligned_cols=157 Identities=18% Similarity=0.140 Sum_probs=86.3
Q ss_pred CCCCCchHHHHHHHHHhcc------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGE------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENI 129 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 129 (769)
...+|.++.+++|.++|.. ....++.++|++|+||||+|+.++... ...|.. +..+...+...+...-
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~~---i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYVR---MALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEE---EEcCCCCCHHHhccch
Confidence 4568999999999988852 244589999999999999999999887 233322 2333333332222211
Q ss_pred HHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc------ccccCCCC---------------CCCCCCc
Q 046742 130 ARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD------LEKLGIPP---------------MNTNGSS 188 (769)
Q Consensus 130 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~~~~~~---------------~~~~~~~ 188 (769)
....+ .........+.+. ....-+++||+++.... ...+...+ +..-.+.
T Consensus 396 ~~~~g--------~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 396 RTYIG--------SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hccCC--------CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 11111 0111112222221 22334788999864311 01111001 1112344
Q ss_pred EEEEeeccCCccc-cccccceEEcCCCCHHHHHHHHHhhh
Q 046742 189 KIVFTTRSAGGCG-LMEAHRIFKVKCLEHKEAWELFQMKV 227 (769)
Q Consensus 189 ~iivTtR~~~v~~-~~~~~~~~~l~~l~~~~a~~l~~~~~ 227 (769)
-+|.|+....+.. ..+....+.+.+++.+|-.++.++.+
T Consensus 467 ~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 467 MFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 4455665443321 12334678999999999999887765
No 220
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.09 E-value=0.0002 Score=71.76 Aligned_cols=132 Identities=23% Similarity=0.319 Sum_probs=69.1
Q ss_pred ceeEEEEeecccccc--cccC----CCCCCCccEEEccCCCCcccchhh-------------hcCCCcceEEEecCCCCC
Q 046742 391 WQVIRRMSLMENQVQ--SLSK----IPSCPSLITLFLNNNNLKVITDGF-------------FQFMPSLKVLNLSNNQSL 451 (769)
Q Consensus 391 ~~~l~~L~l~~~~~~--~~~~----~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~l~~L~~L~L~~~~~~ 451 (769)
+++++.++|+.|-+. .++. +..+..|+.|+|.+|.+....... ..+-+.||++...+| .+
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rl 169 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RL 169 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-cc
Confidence 346777777777542 1222 355677777777777554222211 233456666666666 33
Q ss_pred cccc-----ccccCCcCCCEEeccCCCCc-----ccchhhhcCCCCcEEecCCCcCcCccC---cccccCCcccceeeee
Q 046742 452 KQLP-----SGISRLVSLQHLNLSLTNIK-----ELPEELKALVNLKCLNLDYTKSLCRIP---RHLISNFSMLYILRIV 518 (769)
Q Consensus 452 ~~lp-----~~i~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~l~~~p---~~~i~~L~~L~~L~l~ 518 (769)
..-+ ..+...+.|+.+.+..|.|. -+-..+..+++|+.||+++|.+..... ...+..+++|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 3322 23444556666666666544 123345566666666666664322111 1124555566666666
Q ss_pred ccccc
Q 046742 519 DCHYF 523 (769)
Q Consensus 519 ~~~~~ 523 (769)
+|.+.
T Consensus 250 dcll~ 254 (382)
T KOG1909|consen 250 DCLLE 254 (382)
T ss_pred ccccc
Confidence 66543
No 221
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.07 E-value=0.00096 Score=61.83 Aligned_cols=102 Identities=22% Similarity=0.294 Sum_probs=72.7
Q ss_pred CCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcccccccc-CCcCCCEEeccCCCCcccch--hhhcCCCCcEE
Q 046742 414 PSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGIS-RLVSLQHLNLSLTNIKELPE--ELKALVNLKCL 490 (769)
Q Consensus 414 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~-~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L 490 (769)
...-.+++++|.+..++. |..++.|.+|.|++| .+..+...+. .+++|..|.+.+|+|.++-. -+..+++|++|
T Consensus 42 d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 456678889998877765 788899999999998 5555544443 45678999999988876533 25678888888
Q ss_pred ecCCCcCcCcc---CcccccCCcccceeeeec
Q 046742 491 NLDYTKSLCRI---PRHLISNFSMLYILRIVD 519 (769)
Q Consensus 491 ~l~~~~~l~~~---p~~~i~~L~~L~~L~l~~ 519 (769)
.+-+|+. ..- -..++.++++|+.||...
T Consensus 119 tll~Npv-~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPV-EHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCch-hcccCceeEEEEecCcceEeehhh
Confidence 8888762 222 234567777788887763
No 222
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.013 Score=61.38 Aligned_cols=178 Identities=10% Similarity=0.034 Sum_probs=94.1
Q ss_pred hHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHhhcc-CCCCC--CcEE----EEEEeCccccHHHHHHHHHHHh
Q 046742 62 ESTFDEVWRCLGEEH-VGIIGLYGMGEVGKTTLLTRINNKFS-NTPNG--FDFV----IWVVLSRDLQIDRLQENIARKI 133 (769)
Q Consensus 62 ~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~-~~~~~--f~~~----~wv~~~~~~~~~~~~~~i~~~l 133 (769)
+...+++.+.+..++ .+...++|+.|+||+++|..++..+- ..... -.+. .++..+..+|+..+.
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~------- 80 (334)
T PRK07993 8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT------- 80 (334)
T ss_pred hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe-------
Confidence 345667777777655 44677999999999999999988761 11110 0000 000011111110000
Q ss_pred CCCCcccccccHHHHHHHHHHHH-----ccCCEEEEEecccCccc--ccccCCCCCCCCCCcEEEEeeccC-Ccccc-cc
Q 046742 134 GLYDQSWKNKRLEIKAADIFKIL-----SRKKFVLLLDDIWNRVD--LEKLGIPPMNTNGSSKIVFTTRSA-GGCGL-ME 204 (769)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~iivTtR~~-~v~~~-~~ 204 (769)
+........+++..+ +.+.+ .+++-++|+|+++.... -..+.-.+..-..++.+|++|.+. .+... .+
T Consensus 81 --p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 81 --PEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred --cccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 000001122333332 22222 25666999999976432 111111121222355566666554 44433 23
Q ss_pred ccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHH
Q 046742 205 AHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALI 257 (769)
Q Consensus 205 ~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 257 (769)
....+.+.+++.+++.+.+.+..+.+ .+.+..+++.++|.|....
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~~~~--------~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 158 RCRLHYLAPPPEQYALTWLSREVTMS--------QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccccCCCCCHHHHHHHHHHccCCC--------HHHHHHHHHHcCCCHHHHH
Confidence 34578999999999999886542211 3447788999999996443
No 223
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.003 Score=71.64 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=93.0
Q ss_pred CCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccC--CCCCC-cEEEEEEeCccccHHHHHHHHHH
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSN--TPNGF-DFVIWVVLSRDLQIDRLQENIAR 131 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~--~~~~f-~~~~wv~~~~~~~~~~~~~~i~~ 131 (769)
.++++||++|+.++++.|....-.--.++|.+|+|||++|.-++.+.-. +.... +..++- .++..+
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-----LD~g~L------ 237 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-----LDLGSL------ 237 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-----ecHHHH------
Confidence 4677999999999999997533233358999999999999999998721 11111 111111 011111
Q ss_pred HhCCCCcccccccHHHHHHHHHHHHc-cCCEEEEEecccCcc--------ccc--ccCCCCCCCCCCcEEEEeeccCCc-
Q 046742 132 KIGLYDQSWKNKRLEIKAADIFKILS-RKKFVLLLDDIWNRV--------DLE--KLGIPPMNTNGSSKIVFTTRSAGG- 199 (769)
Q Consensus 132 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~--------~~~--~~~~~~~~~~~~~~iivTtR~~~v- 199 (769)
.... . ...+.+++...+.+.++ .++++|++|.++..- ..+ .+.-|-...+.--.|-.||-++.-
T Consensus 238 -vAGa--k-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk 313 (786)
T COG0542 238 -VAGA--K-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRK 313 (786)
T ss_pred -hccc--c-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHH
Confidence 1111 1 34556677777766665 358999999986531 122 221111122222234445544311
Q ss_pred -----cccccccceEEcCCCCHHHHHHHHHhhh
Q 046742 200 -----CGLMEAHRIFKVKCLEHKEAWELFQMKV 227 (769)
Q Consensus 200 -----~~~~~~~~~~~l~~l~~~~a~~l~~~~~ 227 (769)
+...+..+.+.+...+.+++..++....
T Consensus 314 ~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 314 YIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 1122456789999999999999987654
No 224
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.03 E-value=0.0051 Score=61.90 Aligned_cols=91 Identities=24% Similarity=0.260 Sum_probs=55.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCC----CCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcc-------cccccH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNT----PNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQS-------WKNKRL 145 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 145 (769)
-.+.=|+|++|+|||+|+.+++-.. .. .+.=..++|++....+..+.+. +|+++.+...+. ....+.
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~-~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNV-QLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT-TSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CcEEEEEEecccccchHHHHHHHHh-hcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 4578899999999999999987654 21 1223479999988888887765 466665432210 011222
Q ss_pred H---HHHHHHHHHHcc-CCEEEEEeccc
Q 046742 146 E---IKAADIFKILSR-KKFVLLLDDIW 169 (769)
Q Consensus 146 ~---~~~~~l~~~l~~-k~~LlVlDdv~ 169 (769)
+ +.+..+...+.+ +--|||+|.+-
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHhhccccceEEEEecchH
Confidence 3 333333333433 33488888873
No 225
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.02 E-value=0.0057 Score=71.67 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=37.5
Q ss_pred CCCCCchHHHHHHHHHhcc-------C--CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGE-------E--HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~-------~--~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++|.++.++.+.+.+.. + ...++.++|+.|+|||++|+.++..+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 5568999999998888742 1 23367899999999999999999987
No 226
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.00 E-value=0.0032 Score=62.51 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=34.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDR 124 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 124 (769)
.-.++.|+|++|+|||++|.+++.... ..-..++|++.. ..+.+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHH
Confidence 346899999999999999999998762 223568899877 444443
No 227
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0048 Score=67.66 Aligned_cols=160 Identities=14% Similarity=0.092 Sum_probs=88.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc--cHHHHHHHHHHHhCCCCcccccccHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL--QIDRLQENIARKIGLYDQSWKNKRLEIKAADIF 153 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 153 (769)
..+-|.|.|+.|+|||+||+.+++.+. ......+..|++++-. .++.+++.+-. .+-
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~-------------------vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNN-------------------VFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHHH-------------------HHH
Confidence 345688999999999999999999984 5566667777776632 23333332222 123
Q ss_pred HHHccCCEEEEEecccCcc--------cccc----cCCCC----C-CCCCCcE--EEEeeccCC-----ccccccccceE
Q 046742 154 KILSRKKFVLLLDDIWNRV--------DLEK----LGIPP----M-NTNGSSK--IVFTTRSAG-----GCGLMEAHRIF 209 (769)
Q Consensus 154 ~~l~~k~~LlVlDdv~~~~--------~~~~----~~~~~----~-~~~~~~~--iivTtR~~~-----v~~~~~~~~~~ 209 (769)
+.+.-.+-++||||++-.. ++.. +...+ . -...+.+ +|.|..... +....--....
T Consensus 489 e~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~ 568 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVI 568 (952)
T ss_pred HHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEE
Confidence 3445678899999986321 1110 00000 0 0112333 333443321 11111233467
Q ss_pred EcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCc-hhHHHHH
Q 046742 210 KVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGL-PLALITI 259 (769)
Q Consensus 210 ~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~ 259 (769)
++.++...+-.++++........ ....+..+-+..+|+|. |.-+.++
T Consensus 569 ~L~ap~~~~R~~IL~~~~s~~~~---~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 569 ALPAPAVTRRKEILTTIFSKNLS---DITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred ecCCcchhHHHHHHHHHHHhhhh---hhhhHHHHHHHHhcCCccchhHHHH
Confidence 89999988888887766533221 11233444478888764 4444433
No 228
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.011 Score=66.80 Aligned_cols=174 Identities=14% Similarity=0.135 Sum_probs=101.1
Q ss_pred CCCCCchHHHHHHH---HHhcc---------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 56 PQTLGLESTFDEVW---RCLGE---------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 56 ~~~vGr~~~~~~l~---~~L~~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
.++.|-|+..++|+ ++|.. .-++-|.++||+|+|||-||++++... .+ =|+.++.+.-++
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-gV-------PF~svSGSEFvE 382 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-GV-------PFFSVSGSEFVE 382 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-CC-------ceeeechHHHHH
Confidence 45678776666554 45543 135568899999999999999999987 22 244555442111
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHH-ccCCEEEEEecccCccc-----------------ccccCCCCCCC-
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKIL-SRKKFVLLLDDIWNRVD-----------------LEKLGIPPMNT- 184 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~-----------------~~~~~~~~~~~- 184 (769)
.+... . ..++..+.... ...+.++.+|+++...- +..+.......
T Consensus 383 --------~~~g~-------~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 383 --------MFVGV-------G-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred --------Hhccc-------c-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 11110 0 11222233322 24678999998764211 12221111111
Q ss_pred -CCCcEEEEeeccCCccc-----cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHH
Q 046742 185 -NGSSKIVFTTRSAGGCG-----LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLAL 256 (769)
Q Consensus 185 -~~~~~iivTtR~~~v~~-----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 256 (769)
..+..++-+|+..++.+ -.+-+..+.++.-+...-.++|+.++...... .+..++.+ |+...-|++=|.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 22333334555555532 12335678888899999999999888665522 34466777 999999988554
No 229
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.96 E-value=0.00064 Score=60.00 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+|+|.|++|+||||+|+.+++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 230
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.95 E-value=0.0044 Score=62.15 Aligned_cols=91 Identities=21% Similarity=0.217 Sum_probs=56.1
Q ss_pred CchHHHHHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCc
Q 046742 60 GLESTFDEVWRCLGE-EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQ 138 (769)
Q Consensus 60 Gr~~~~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 138 (769)
++...+.++.+.... ++..-+.++|++|+|||.||.+++++.. +..+ .+.++ +..+++.++.......
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~-sv~f~------~~~el~~~Lk~~~~~~-- 155 (254)
T COG1484 87 IDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL--KAGI-SVLFI------TAPDLLSKLKAAFDEG-- 155 (254)
T ss_pred hhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH--HcCC-eEEEE------EHHHHHHHHHHHHhcC--
Confidence 445555555443321 2556788999999999999999999983 3333 34555 5667777777665421
Q ss_pred ccccccHHHHHHHHHHHHccCCEEEEEecccC
Q 046742 139 SWKNKRLEIKAADIFKILSRKKFVLLLDDIWN 170 (769)
Q Consensus 139 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 170 (769)
....++.+.+. +-=||||||+-.
T Consensus 156 --------~~~~~l~~~l~-~~dlLIiDDlG~ 178 (254)
T COG1484 156 --------RLEEKLLRELK-KVDLLIIDDIGY 178 (254)
T ss_pred --------chHHHHHHHhh-cCCEEEEecccC
Confidence 11222333222 223899999854
No 231
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.95 E-value=0.0016 Score=65.92 Aligned_cols=131 Identities=14% Similarity=0.175 Sum_probs=72.2
Q ss_pred CchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEE-EEE---EeCcc---------ccHHHHH
Q 046742 60 GLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFV-IWV---VLSRD---------LQIDRLQ 126 (769)
Q Consensus 60 Gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~-~wv---~~~~~---------~~~~~~~ 126 (769)
+|..+..--+++|.++....|.+.|.+|.|||.||....=...-.+..|..+ +.- .++++ ..+.-=.
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWm 307 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWM 307 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchH
Confidence 4666666678889999999999999999999988776543221123445433 222 12221 1222222
Q ss_pred HHHHHHhCCCCcccccccHHHHHHHHH----------HHHccC---CEEEEEecccCc--ccccccCCCCCCCCCCcEEE
Q 046742 127 ENIARKIGLYDQSWKNKRLEIKAADIF----------KILSRK---KFVLLLDDIWNR--VDLEKLGIPPMNTNGSSKIV 191 (769)
Q Consensus 127 ~~i~~~l~~~~~~~~~~~~~~~~~~l~----------~~l~~k---~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~ii 191 (769)
+.|.+.+..-... .... +..++.+. .+++++ +-++|+|++.+. .++..+ +-..+.|+|||
T Consensus 308 q~i~DnLE~L~~~-~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---ltR~G~GsKIV 382 (436)
T COG1875 308 QAIFDNLEVLFSP-NEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LTRAGEGSKIV 382 (436)
T ss_pred HHHHhHHHHHhcc-cccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HHhccCCCEEE
Confidence 3333333211100 1011 22222221 233454 459999999875 344444 34567899999
Q ss_pred Eeec
Q 046742 192 FTTR 195 (769)
Q Consensus 192 vTtR 195 (769)
.|--
T Consensus 383 l~gd 386 (436)
T COG1875 383 LTGD 386 (436)
T ss_pred EcCC
Confidence 8864
No 232
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.94 E-value=0.0077 Score=59.82 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=55.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCC----CCcEEEEEEeCccccHHHHHHHHHHHhCCCCc-------cccccc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPN----GFDFVIWVVLSRDLQIDRLQENIARKIGLYDQ-------SWKNKR 144 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~~ 144 (769)
.-.++.|+|++|+|||++|.+++.... ..+ .=..++|++....++...+. ++++....... -....+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~-~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ-LPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh-cccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCC
Confidence 356899999999999999999987751 111 11567899887766654443 33333221100 012234
Q ss_pred HHHHHHHHHHHHc---c-CCEEEEEeccc
Q 046742 145 LEIKAADIFKILS---R-KKFVLLLDDIW 169 (769)
Q Consensus 145 ~~~~~~~l~~~l~---~-k~~LlVlDdv~ 169 (769)
.++....+.+... . +.-++|+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 4555555555433 3 44589999874
No 233
>PHA00729 NTP-binding motif containing protein
Probab=96.94 E-value=0.004 Score=60.30 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=28.6
Q ss_pred HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 67 EVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 67 ~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
++.+.+...+...|+|+|.+|+||||||..++++.
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555555666689999999999999999999986
No 234
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.94 E-value=0.0061 Score=60.98 Aligned_cols=92 Identities=17% Similarity=0.241 Sum_probs=53.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCC----CCcEEEEEEeCccccHHHHHHHHHHHhCCCCcc----------cc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPN----GFDFVIWVVLSRDLQIDRLQENIARKIGLYDQS----------WK 141 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----------~~ 141 (769)
.-.++.|+|++|+|||++|.+++... .... .-..++|++....++...+. ++++..+..... ..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCC
Confidence 34689999999999999999998654 1122 13578999887766554433 344443321100 01
Q ss_pred cccHHHHHHHHHHHHcc--CCEEEEEeccc
Q 046742 142 NKRLEIKAADIFKILSR--KKFVLLLDDIW 169 (769)
Q Consensus 142 ~~~~~~~~~~l~~~l~~--k~~LlVlDdv~ 169 (769)
..+.......+.+.+.. +.-++|+|-+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 11222333444444433 45688888874
No 235
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.91 E-value=0.0055 Score=72.61 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=37.3
Q ss_pred CCCCCchHHHHHHHHHhcc-------CC--ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGE-------EH--VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~-------~~--~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++|.+..++.+.+.+.. ++ ..++.++|+.|+|||++|+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999998888742 11 2478899999999999999999876
No 236
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.88 E-value=0.0071 Score=65.30 Aligned_cols=89 Identities=22% Similarity=0.187 Sum_probs=52.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCCccc-ccccHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYDQSW-KNKRLEIKAADIF 153 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 153 (769)
.+.+|.++|++|+||||.|..++..+. . ..+ .+.-|++... +...+.++.++++++++.... ...+....+....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-K-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-H-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 367899999999999999999998873 2 223 3444544332 234555666777776543211 1233333333334
Q ss_pred HHHccCCEEEEEecc
Q 046742 154 KILSRKKFVLLLDDI 168 (769)
Q Consensus 154 ~~l~~k~~LlVlDdv 168 (769)
+.+.+. -++|+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 444443 46777876
No 237
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0022 Score=72.62 Aligned_cols=105 Identities=20% Similarity=0.318 Sum_probs=65.4
Q ss_pred CCCCCchHHHHHHHHHhcc-------C--CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGE-------E--HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQ 126 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~-------~--~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 126 (769)
..++|.++.++.+.+.+.. + ..++....||.|+|||.||++++..+ .+.=+..+-+++|.....
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~Ek---- 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEK---- 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHH----
Confidence 5679999999999998842 2 34467789999999999999999988 222234444444433111
Q ss_pred HHHHHHhCCCCcccccccHHHHHHHHHHHHccCCE-EEEEecccCc
Q 046742 127 ENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKF-VLLLDDIWNR 171 (769)
Q Consensus 127 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~ 171 (769)
..+.+-+|.+ ++....+ + --.+-+..+.++| ++.||+|+..
T Consensus 564 HsVSrLIGaP-PGYVGye--e-GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 564 HSVSRLIGAP-PGYVGYE--E-GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHHhCCC-CCCceec--c-ccchhHhhhcCCCeEEEechhhhc
Confidence 1122223332 2211111 1 3345667778887 8889999743
No 238
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.86 E-value=0.0075 Score=59.85 Aligned_cols=89 Identities=16% Similarity=0.199 Sum_probs=52.4
Q ss_pred HHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccc
Q 046742 64 TFDEVWRCLGE--EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWK 141 (769)
Q Consensus 64 ~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 141 (769)
.+..+.++..+ .+...+.++|.+|+|||+||..+++... ..-..++++ +..+++..+-..... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~i------t~~~l~~~l~~~~~~-----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLII------TVADIMSAMKDTFSN-----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEE------EHHHHHHHHHHHHhh-----c
Confidence 45555555543 2335788999999999999999999873 222345666 345555555444321 1
Q ss_pred cccHHHHHHHHHHHHccCCEEEEEecccCc
Q 046742 142 NKRLEIKAADIFKILSRKKFVLLLDDIWNR 171 (769)
Q Consensus 142 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 171 (769)
..+.+ .+.+.+. +.=+||+||+...
T Consensus 150 ~~~~~----~~l~~l~-~~dlLvIDDig~~ 174 (244)
T PRK07952 150 ETSEE----QLLNDLS-NVDLLVIDEIGVQ 174 (244)
T ss_pred cccHH----HHHHHhc-cCCEEEEeCCCCC
Confidence 11111 2333344 3348888998643
No 239
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.85 E-value=0.0048 Score=65.15 Aligned_cols=144 Identities=12% Similarity=0.032 Sum_probs=82.0
Q ss_pred CCCCchHHHHHHHHHhcc-CCccE-EEEEcCCCCcHHHHHHHHHhhccCCCC------------------CCcEEEEEEe
Q 046742 57 QTLGLESTFDEVWRCLGE-EHVGI-IGLYGMGEVGKTTLLTRINNKFSNTPN------------------GFDFVIWVVL 116 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~~-~~~~v-v~I~G~gGiGKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~ 116 (769)
.++|-+....++..+..+ ++.+. +.++|+.|+||||+|..+++.+-.... ....+..++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 357778888888888874 43444 999999999999999999998721100 1123444444
Q ss_pred Ccccc---HHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc--ccccCCCCCCCCCCcEEE
Q 046742 117 SRDLQ---IDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD--LEKLGIPPMNTNGSSKIV 191 (769)
Q Consensus 117 ~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~ii 191 (769)
+.... ..+.++++.+....... .++.-++|+|+++.... -..+...+......+.+|
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~------------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL------------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC------------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEE
Confidence 44433 34444444444432210 35677999999986532 222211122233456777
Q ss_pred EeeccC-Cccccc-cccceEEcCCCCHHH
Q 046742 192 FTTRSA-GGCGLM-EAHRIFKVKCLEHKE 218 (769)
Q Consensus 192 vTtR~~-~v~~~~-~~~~~~~l~~l~~~~ 218 (769)
++|... .+.... .....+++.+.+..+
T Consensus 144 l~~n~~~~il~tI~SRc~~i~f~~~~~~~ 172 (325)
T COG0470 144 LITNDPSKILPTIRSRCQRIRFKPPSRLE 172 (325)
T ss_pred EEcCChhhccchhhhcceeeecCCchHHH
Confidence 777633 332212 233466777744333
No 240
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.83 E-value=0.009 Score=58.91 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=31.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL 120 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 120 (769)
.-.++.|.|.+|+||||+|.+++.... ..-..++|++....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~ 59 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLS 59 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCC
Confidence 356889999999999999999998862 223357788765443
No 241
>PRK04132 replication factor C small subunit; Provisional
Probab=96.83 E-value=0.017 Score=67.17 Aligned_cols=153 Identities=10% Similarity=0.035 Sum_probs=92.1
Q ss_pred EEc--CCCCcHHHHHHHHHhhccCCCCCC-cEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHcc
Q 046742 82 LYG--MGEVGKTTLLTRINNKFSNTPNGF-DFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSR 158 (769)
Q Consensus 82 I~G--~gGiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 158 (769)
+.| |.++||||+|..+++++ -. +.+ ..++-++.+...+... ++++++......+ . -..
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l-~g-~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~--~--------------~~~ 629 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALAREL-FG-ENWRHNFLELNASDERGINV-IREKVKEFARTKP--I--------------GGA 629 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhh-hc-ccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCC--c--------------CCC
Confidence 447 88999999999999986 11 222 2456677776545443 3333333211000 0 012
Q ss_pred CCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeeccCC-cccc-ccccceEEcCCCCHHHHHHHHHhhhCCCccCC
Q 046742 159 KKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTRSAG-GCGL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLES 234 (769)
Q Consensus 159 k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR~~~-v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~ 234 (769)
+.-++|+|+++... ....+...+......+++|+++.+.. +... ......+++.+++.++..+.+.+.+.......
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i 709 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL 709 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 45799999998753 33333222222234566776665543 2222 22346899999999999998887765433111
Q ss_pred CCCHHHHHHHHHHHcCCchhHH
Q 046742 235 HLQIPELAEIVAKECDGLPLAL 256 (769)
Q Consensus 235 ~~~~~~~~~~i~~~~~g~Plai 256 (769)
..+....|++.++|-+..+
T Consensus 710 ---~~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 710 ---TEEGLQAILYIAEGDMRRA 728 (846)
T ss_pred ---CHHHHHHHHHHcCCCHHHH
Confidence 2567889999999988543
No 242
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.83 E-value=0.004 Score=68.80 Aligned_cols=55 Identities=25% Similarity=0.367 Sum_probs=42.9
Q ss_pred CCCCCchHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEE
Q 046742 56 PQTLGLESTFDEVWRCLGE-----EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVV 115 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 115 (769)
.+++--...++++.+||.+ ...+++.++||+|+||||.++.+++.+ .|+.+-|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 4455566778889999964 235689999999999999999999986 256677864
No 243
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.83 E-value=0.0032 Score=64.75 Aligned_cols=87 Identities=18% Similarity=0.141 Sum_probs=56.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcc---cccccHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQS---WKNKRLEIKAADI 152 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 152 (769)
.-+++-|+|++|+||||||.+++.... ..-..++|++....++.. .+++++...+. .+..+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 456889999999999999999888762 223457788776655442 35555543221 1233455555555
Q ss_pred HHHHc-cCCEEEEEecccC
Q 046742 153 FKILS-RKKFVLLLDDIWN 170 (769)
Q Consensus 153 ~~~l~-~k~~LlVlDdv~~ 170 (769)
...++ +..-++|+|-|..
T Consensus 126 ~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHhhccCCcEEEEcchhh
Confidence 55554 3456999999753
No 244
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.82 E-value=0.041 Score=57.52 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=53.7
Q ss_pred cCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeecc-CCcccc-ccccceEEcCCCCHHHHHHHHHhhhCCCccC
Q 046742 158 RKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTRS-AGGCGL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLE 233 (769)
Q Consensus 158 ~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR~-~~v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~ 233 (769)
++.-++|+|+++... ....+.-.+..-..++.+|++|.+ ..+... ......+.+.+++.++..+.+.... ..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~-~~--- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG-VA--- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-CC---
Confidence 455688999997652 222221112222345555555544 444433 2334689999999999999987641 11
Q ss_pred CCCCHHHHHHHHHHHcCCchhHHHHHH
Q 046742 234 SHLQIPELAEIVAKECDGLPLALITIG 260 (769)
Q Consensus 234 ~~~~~~~~~~~i~~~~~g~Plai~~~~ 260 (769)
. .+.++..++|.|..+..+.
T Consensus 207 ---~----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 207 ---D----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred ---h----HHHHHHHcCCCHHHHHHHH
Confidence 0 2335778899997554443
No 245
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.81 E-value=0.005 Score=60.29 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=52.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHh-C---CCC---cccccccHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKI-G---LYD---QSWKNKRLEIK 148 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-~---~~~---~~~~~~~~~~~ 148 (769)
.-.++.|+|++|+|||++|.+++.... ..-..++|++... ++...+.+ +++.. . ... +.....+....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 346899999999999999999988762 2345789998875 45444433 22221 0 000 00011122233
Q ss_pred HHHHHHHHcc-CCEEEEEeccc
Q 046742 149 AADIFKILSR-KKFVLLLDDIW 169 (769)
Q Consensus 149 ~~~l~~~l~~-k~~LlVlDdv~ 169 (769)
...+.+.+.. +.-++|+|.+.
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcH
Confidence 4444444443 45588888874
No 246
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.79 E-value=0.0039 Score=74.12 Aligned_cols=60 Identities=18% Similarity=0.286 Sum_probs=43.8
Q ss_pred CCCCCchHHHHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc
Q 046742 56 PQTLGLESTFDEVWRCLGEE---------HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR 118 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 118 (769)
..++|.+..++.+.+.+... ...++.++|+.|+|||++|+.++.... ..-...+.++++.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~---~~~~~~i~~d~s~ 633 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF---DDEDAMVRIDMSE 633 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc---CCCCcEEEEechh
Confidence 46789999999998888531 134688999999999999999999872 2222344455544
No 247
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.79 E-value=0.0034 Score=64.67 Aligned_cols=87 Identities=18% Similarity=0.122 Sum_probs=55.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcc---cccccHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQS---WKNKRLEIKAADI 152 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 152 (769)
.-+++-|+|++|+||||||.+++.... ..-..++|++....++.. .+++++...+. ....+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~---~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQ---KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 456888999999999999999887762 223457899877665543 34445432211 1223455555555
Q ss_pred HHHHcc-CCEEEEEecccC
Q 046742 153 FKILSR-KKFVLLLDDIWN 170 (769)
Q Consensus 153 ~~~l~~-k~~LlVlDdv~~ 170 (769)
...++. ..-++|+|-|..
T Consensus 126 ~~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHHHhccCCCEEEEcchHh
Confidence 555543 456899998753
No 248
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.79 E-value=0.0038 Score=59.23 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=28.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEE
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWV 114 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv 114 (769)
...+|.+.|+.|+||||+|+.++..+ ...+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 34689999999999999999999988 3345555555
No 249
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.78 E-value=0.0099 Score=68.31 Aligned_cols=150 Identities=15% Similarity=0.084 Sum_probs=81.6
Q ss_pred CCCchHHHHHHHHHh---cc---------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHH
Q 046742 58 TLGLESTFDEVWRCL---GE---------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRL 125 (769)
Q Consensus 58 ~vGr~~~~~~l~~~L---~~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 125 (769)
+.|.+...+++.+.+ .+ .-.+-|.++|++|+|||++|+.++... ...| +.+..+ ++
T Consensus 154 i~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~------~~ 221 (644)
T PRK10733 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGS------DF 221 (644)
T ss_pred HcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehH------Hh
Confidence 457776666665544 22 113458899999999999999999987 2233 222211 11
Q ss_pred HHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc----------------ccccCCCCC--CCCCC
Q 046742 126 QENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD----------------LEKLGIPPM--NTNGS 187 (769)
Q Consensus 126 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~~~--~~~~~ 187 (769)
.. + ..+ .........+...-...+.+|++|+++.... +..+...+. ....+
T Consensus 222 ~~-~--~~g--------~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~ 290 (644)
T PRK10733 222 VE-M--FVG--------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290 (644)
T ss_pred HH-h--hhc--------ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC
Confidence 11 0 011 1112222233333345678999999875310 111111111 11234
Q ss_pred cEEEEeeccCCcccc-----ccccceEEcCCCCHHHHHHHHHhhhCCC
Q 046742 188 SKIVFTTRSAGGCGL-----MEAHRIFKVKCLEHKEAWELFQMKVGRE 230 (769)
Q Consensus 188 ~~iivTtR~~~v~~~-----~~~~~~~~l~~l~~~~a~~l~~~~~~~~ 230 (769)
.-+|.||...+.... .+-+..+.++..+.++-.++++......
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV 338 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC
Confidence 445556665543221 1234678888889888888888776543
No 250
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.76 E-value=0.003 Score=74.52 Aligned_cols=46 Identities=17% Similarity=0.318 Sum_probs=37.7
Q ss_pred CCCCCchHHHHHHHHHhcc-------C--CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGE-------E--HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~-------~--~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++|.++.++.+.+.+.. + ...++.++|+.|+|||.+|+.++..+
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 5668999999999888732 1 23468899999999999999998887
No 251
>PRK10867 signal recognition particle protein; Provisional
Probab=96.75 E-value=0.0094 Score=64.20 Aligned_cols=91 Identities=14% Similarity=0.129 Sum_probs=47.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc-cHHHHHHHHHHHhCCCCcc-cccccHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL-QIDRLQENIARKIGLYDQS-WKNKRLEIKAADIF 153 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~ 153 (769)
.+.+|.++|++|+||||.|..++..+. .... ..+..|++.... ...+-++..++..+++.-. ....+.........
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~-~~~G-~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLK-KKKK-KKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HhcC-CcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 367899999999999999999988762 1212 234445443322 2223334445555543211 01223444443333
Q ss_pred HHHccCCE-EEEEecc
Q 046742 154 KILSRKKF-VLLLDDI 168 (769)
Q Consensus 154 ~~l~~k~~-LlVlDdv 168 (769)
+..+.+.+ ++|+|-.
T Consensus 177 ~~a~~~~~DvVIIDTa 192 (433)
T PRK10867 177 EEAKENGYDVVIVDTA 192 (433)
T ss_pred HHHHhcCCCEEEEeCC
Confidence 33333333 5555554
No 252
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.01 Score=65.42 Aligned_cols=157 Identities=15% Similarity=0.160 Sum_probs=86.4
Q ss_pred CCCCchHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHH
Q 046742 57 QTLGLESTFDEVWRCLG------EEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIA 130 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 130 (769)
.-.|.++..++|++++. .-+-+++..+||+|+|||++|+.++..+ . ..|- =+.++.-.+..++-..--
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL-n--RkFf---RfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL-N--RKFF---RFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh-C--CceE---EEeccccccHHhhcccce
Confidence 44799999999999883 2355799999999999999999999998 2 2221 224444444443322111
Q ss_pred HHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc---------cccccCC---------CCCCC-CCCcEEE
Q 046742 131 RKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV---------DLEKLGI---------PPMNT-NGSSKIV 191 (769)
Q Consensus 131 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~~~~---------~~~~~-~~~~~ii 191 (769)
-..+ .=+..++..++. .+...=|+.||+|+..- .+-++.. .+.+. -.=|+|+
T Consensus 486 TYVG--------AMPGkiIq~LK~-v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 486 TYVG--------AMPGKIIQCLKK-VKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred eeec--------cCChHHHHHHHh-hCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 1111 111122222222 22344588889986421 1111111 11010 0125565
Q ss_pred E-eeccC-C-c-cccccccceEEcCCCCHHHHHHHHHhhhC
Q 046742 192 F-TTRSA-G-G-CGLMEAHRIFKVKCLEHKEAWELFQMKVG 228 (769)
Q Consensus 192 v-TtR~~-~-v-~~~~~~~~~~~l~~l~~~~a~~l~~~~~~ 228 (769)
+ .|-|. + + ....+....|+|.+...+|-..+-.+++.
T Consensus 557 FicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred EEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhh
Confidence 4 33321 1 1 12234557899999999998888776653
No 253
>PRK09354 recA recombinase A; Provisional
Probab=96.72 E-value=0.0047 Score=64.13 Aligned_cols=87 Identities=16% Similarity=0.125 Sum_probs=57.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcc---cccccHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQS---WKNKRLEIKAADI 152 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 152 (769)
.-+++-|+|++|+||||||.+++.... ..-..++|++....++.. .+++++...+. .+..+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~---~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 456888999999999999999987762 233567899887766642 45555543221 1233455555555
Q ss_pred HHHHcc-CCEEEEEecccC
Q 046742 153 FKILSR-KKFVLLLDDIWN 170 (769)
Q Consensus 153 ~~~l~~-k~~LlVlDdv~~ 170 (769)
...++. ..-++|+|-|..
T Consensus 131 ~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHhhcCCCCEEEEeChhh
Confidence 555543 456899999753
No 254
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.71 E-value=0.0039 Score=64.19 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=24.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+..++|+|++|+|||.+|+.++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 346689999999999999999999998
No 255
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.70 E-value=0.012 Score=60.91 Aligned_cols=59 Identities=24% Similarity=0.366 Sum_probs=42.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCC----CCCcEEEEEEeCccccHHHHHHHHHHHhCCC
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTP----NGFDFVIWVVLSRDLQIDRLQENIARKIGLY 136 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 136 (769)
.-+++-|+|++|+|||+++.+++-.. ... +.-..++|++....++.+++.+ ++++++..
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~-~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d 157 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTA-QLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVD 157 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHH-hcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 34578899999999999999987543 111 1224789999888888877654 56666543
No 256
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.69 E-value=0.0054 Score=56.08 Aligned_cols=117 Identities=21% Similarity=0.193 Sum_probs=60.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEE---eCccccHHHHHHHHHHHhCC---CC-cccccccHH----
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVV---LSRDLQIDRLQENIARKIGL---YD-QSWKNKRLE---- 146 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i~~~l~~---~~-~~~~~~~~~---- 146 (769)
+.|-|++..|.||||+|...+-+.. ...+. +.++. .........+++.+- .+.. .. ..+...+.+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~--~~g~~-v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL--GHGYR-VGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--HCCCe-EEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 5778888899999999999988863 23333 44433 322233344444331 0100 00 000111111
Q ss_pred ---HHHHHHHHHHccCCE-EEEEecccCc-----ccccccCCCCCCCCCCcEEEEeeccCC
Q 046742 147 ---IKAADIFKILSRKKF-VLLLDDIWNR-----VDLEKLGIPPMNTNGSSKIVFTTRSAG 198 (769)
Q Consensus 147 ---~~~~~l~~~l~~k~~-LlVlDdv~~~-----~~~~~~~~~~~~~~~~~~iivTtR~~~ 198 (769)
+.....++.+....| |+|||++-.. .+.+.+...+.....+..||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 122233344444444 9999997432 122223222334455678999999864
No 257
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.03 Score=53.67 Aligned_cols=157 Identities=15% Similarity=0.236 Sum_probs=84.1
Q ss_pred CchHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHH
Q 046742 60 GLESTFDEVWRCLG-------------EEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQ 126 (769)
Q Consensus 60 Gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 126 (769)
|.+-...++.+... =+.++-|.++|++|+|||-||++|+++- ...| +.+-.. ++.
T Consensus 159 gld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t---~a~f-----irvvgs----efv 226 (408)
T KOG0727|consen 159 GLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAF-----IRVVGS----EFV 226 (408)
T ss_pred cchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc---chhe-----eeeccH----HHH
Confidence 66666777766652 1467788999999999999999999986 3444 333222 111
Q ss_pred HHHHHHhCCCCcccccccHHHHHHHHHHHH-ccCCEEEEEecccCcc------------ccc----ccCCCCC--CCCCC
Q 046742 127 ENIARKIGLYDQSWKNKRLEIKAADIFKIL-SRKKFVLLLDDIWNRV------------DLE----KLGIPPM--NTNGS 187 (769)
Q Consensus 127 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~~~----~~~~~~~--~~~~~ 187 (769)
+ +.++... .+...+.+.. .+-+.++.+|+++... +.+ ++..... +...+
T Consensus 227 q---kylgegp---------rmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~n 294 (408)
T KOG0727|consen 227 Q---KYLGEGP---------RMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTN 294 (408)
T ss_pred H---HHhccCc---------HHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccc
Confidence 1 1233211 1222233332 3457888899886421 111 1111111 23446
Q ss_pred cEEEEeeccCCc-----cccccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHH
Q 046742 188 SKIVFTTRSAGG-----CGLMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPE 240 (769)
Q Consensus 188 ~~iivTtR~~~v-----~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~ 240 (769)
.+||+.|...+- ..-.+-+..++.+--+..+-.-.|......-......++++
T Consensus 295 vkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~ 352 (408)
T KOG0727|consen 295 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLED 352 (408)
T ss_pred eEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHH
Confidence 788887664432 22223345677764455555556666655444333333333
No 258
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.68 E-value=0.012 Score=63.44 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=51.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCCcc-cccccHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYDQS-WKNKRLEIKAADIFK 154 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 154 (769)
+.++.++|++|+||||.|..++..+. .+..+ .+.-|++... +...+-+...++..+++... ....++.+......+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~-~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK-KKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-HhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 56899999999999999999988751 11222 3445554432 22334444455555544311 122334444444444
Q ss_pred HHccCCE-EEEEeccc
Q 046742 155 ILSRKKF-VLLLDDIW 169 (769)
Q Consensus 155 ~l~~k~~-LlVlDdv~ 169 (769)
.+..+.+ ++|+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 4444444 77777654
No 259
>PTZ00494 tuzin-like protein; Provisional
Probab=96.68 E-value=0.27 Score=51.87 Aligned_cols=163 Identities=11% Similarity=0.068 Sum_probs=100.7
Q ss_pred CCCCCCchHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHH
Q 046742 55 IPQTLGLESTFDEVWRCLGE---EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIAR 131 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 131 (769)
...+|.|+.|-..+.+.|.+ ..++++++.|.-|+|||+|.+...... .+ ..++|++... ++-++.+.+
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-~~-----paV~VDVRg~---EDtLrsVVK 440 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-GV-----ALVHVDVGGT---EDTLRSVVR 440 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-CC-----CeEEEEecCC---cchHHHHHH
Confidence 36789999998888888854 468899999999999999999988775 22 3578887765 445677888
Q ss_pred HhCCCCcccccccHHHHHHHHHHH---HccCCEEEEEe--cccCccc-ccccCCCCCCCCCCcEEEEeeccCCcc--c-c
Q 046742 132 KIGLYDQSWKNKRLEIKAADIFKI---LSRKKFVLLLD--DIWNRVD-LEKLGIPPMNTNGSSKIVFTTRSAGGC--G-L 202 (769)
Q Consensus 132 ~l~~~~~~~~~~~~~~~~~~l~~~---l~~k~~LlVlD--dv~~~~~-~~~~~~~~~~~~~~~~iivTtR~~~v~--~-~ 202 (769)
+++.+....-..-++.+.+..+.. ..++.=+||+- +-.+..- +.+ ...+..+..-|.|++----+.+- . .
T Consensus 441 ALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE-~vaLacDrRlCHvv~EVplESLT~~n~~ 519 (664)
T PTZ00494 441 ALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGE-VVSLVSDCQACHIVLAVPMKALTPLNVS 519 (664)
T ss_pred HhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHH-HHHHHccchhheeeeechHhhhchhhcc
Confidence 888764332333344444444433 23444455543 2222110 111 11122333446676543322221 0 1
Q ss_pred ccccceEEcCCCCHHHHHHHHHhhh
Q 046742 203 MEAHRIFKVKCLEHKEAWELFQMKV 227 (769)
Q Consensus 203 ~~~~~~~~l~~l~~~~a~~l~~~~~ 227 (769)
...-..|.+++|+.++|.++.++..
T Consensus 520 LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 520 SRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred CccceeEecCCcCHHHHHHHHhccc
Confidence 1234678999999999999987765
No 260
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.016 Score=61.70 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=34.8
Q ss_pred CCch---HHHHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 59 LGLE---STFDEVWRCLGEE---------HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 59 vGr~---~~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
-|-| +|+++|+++|.++ =++-|.++|++|.|||-||++++...
T Consensus 307 kG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 307 KGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4654 5677788888762 24578899999999999999999987
No 261
>PRK06696 uridine kinase; Validated
Probab=96.66 E-value=0.0027 Score=62.79 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=35.6
Q ss_pred CchHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 60 GLESTFDEVWRCLGE---EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 60 Gr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.|++.+++|.+.+.. ++..+|+|.|.+|+||||+|+.++..+
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 467778888877743 567799999999999999999999987
No 262
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.65 E-value=0.01 Score=61.29 Aligned_cols=90 Identities=23% Similarity=0.259 Sum_probs=55.2
Q ss_pred CchHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCC
Q 046742 60 GLESTFDEVWRCLGE----EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGL 135 (769)
Q Consensus 60 Gr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 135 (769)
+|........+++.. ...+-+.|+|+.|+|||.||..+++... ...+. +.++. ...++.++......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~-v~~~~------~~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVS-STLLH------FPEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCC-EEEEE------HHHHHHHHHHHHhc
Confidence 455555555566642 2346789999999999999999999983 23343 45553 44566666655431
Q ss_pred CCcccccccHHHHHHHHHHHHccCCEEEEEecccC
Q 046742 136 YDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWN 170 (769)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 170 (769)
.+... ..+.+. +-=||||||+..
T Consensus 206 -------~~~~~----~l~~l~-~~dlLiIDDiG~ 228 (306)
T PRK08939 206 -------GSVKE----KIDAVK-EAPVLMLDDIGA 228 (306)
T ss_pred -------CcHHH----HHHHhc-CCCEEEEecCCC
Confidence 11222 222222 345899999854
No 263
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.64 E-value=0.0012 Score=75.53 Aligned_cols=138 Identities=21% Similarity=0.199 Sum_probs=90.4
Q ss_pred CCCccEEEccCCCC--cccchhhhcCCCcceEEEecCCCCC-ccccccccCCcCCCEEeccCCCCcccchhhhcCCCCcE
Q 046742 413 CPSLITLFLNNNNL--KVITDGFFQFMPSLKVLNLSNNQSL-KQLPSGISRLVSLQHLNLSLTNIKELPEELKALVNLKC 489 (769)
Q Consensus 413 ~~~L~~L~l~~~~~--~~~~~~~~~~l~~L~~L~L~~~~~~-~~lp~~i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~ 489 (769)
-.+|+.|+++|... ...+...-..+|+|+.|.+++-... .++-.-..++++|..||+|+++++.+ .++++|++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 35788888888632 2334444456889999999885332 22333446788899999999999888 78999999999
Q ss_pred EecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEecc
Q 046742 490 LNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTS 551 (769)
Q Consensus 490 L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 551 (769)
|.+++=.....-.-..+-+|++|+.||+|.-.......-....++.-..|++|+.|+++...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 98876543221111126788999999998654333222222333444457888888888544
No 264
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.63 E-value=0.007 Score=57.24 Aligned_cols=89 Identities=19% Similarity=0.111 Sum_probs=46.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCCcc-cccccHHHHHHH-HHHH
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYDQS-WKNKRLEIKAAD-IFKI 155 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~-l~~~ 155 (769)
++.++|++|+||||+++.++.... ...+ .++.++.... ....+.+...++..+.+... ....+..+.... +...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~--~~g~-~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK--KKGK-KVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--HCCC-cEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998872 1222 3444443322 22333344444444432111 122334443333 3333
Q ss_pred HccCCEEEEEecccC
Q 046742 156 LSRKKFVLLLDDIWN 170 (769)
Q Consensus 156 l~~k~~LlVlDdv~~ 170 (769)
..+..-++|+|..-.
T Consensus 79 ~~~~~d~viiDt~g~ 93 (173)
T cd03115 79 REENFDVVIVDTAGR 93 (173)
T ss_pred HhCCCCEEEEECccc
Confidence 333433666777543
No 265
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.034 Score=62.40 Aligned_cols=152 Identities=16% Similarity=0.144 Sum_probs=87.5
Q ss_pred CCCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 57 QTLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
...|.+...+.+.+.+.- ...+.+.++|++|+|||.||++++... ...|-.+. ..
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~-----~~---- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVK-----GS---- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEee-----CH----
Confidence 335666666666555521 245578899999999999999999976 34443221 11
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc-------------ccccCCCCC--CCCCCc
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD-------------LEKLGIPPM--NTNGSS 188 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~~~--~~~~~~ 188 (769)
. +.. .+.......+...+...-+..+..|.+|+++.... ...+...+. ....+.
T Consensus 311 ~----l~s-------k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v 379 (494)
T COG0464 311 E----LLS-------KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379 (494)
T ss_pred H----Hhc-------cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCce
Confidence 0 110 11223333334444444457889999999875311 111211221 222333
Q ss_pred EEEEeeccCCccc-----cccccceEEcCCCCHHHHHHHHHhhhCCCc
Q 046742 189 KIVFTTRSAGGCG-----LMEAHRIFKVKCLEHKEAWELFQMKVGRET 231 (769)
Q Consensus 189 ~iivTtR~~~v~~-----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~ 231 (769)
.||-||....... ..+-...+.++.-+.++..++|+.......
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~ 427 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKK 427 (494)
T ss_pred EEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccC
Confidence 3444444443322 113356789999999999999999886433
No 266
>PRK14974 cell division protein FtsY; Provisional
Probab=96.62 E-value=0.014 Score=60.68 Aligned_cols=92 Identities=21% Similarity=0.158 Sum_probs=50.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCCcc-cccccHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYDQS-WKNKRLEIKAADIF 153 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~ 153 (769)
+..+|+++|+.|+||||.+..++..+. ...+ .++.+..... .....-++..++.++.+... ....+....+....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK--KNGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 357899999999999999999988772 2233 3444543322 22334455566777654311 12223333222222
Q ss_pred HHHc-cCCEEEEEecccC
Q 046742 154 KILS-RKKFVLLLDDIWN 170 (769)
Q Consensus 154 ~~l~-~k~~LlVlDdv~~ 170 (769)
+... ...=++++|-+..
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 2222 2223888998753
No 267
>PRK04296 thymidine kinase; Provisional
Probab=96.61 E-value=0.0026 Score=61.04 Aligned_cols=114 Identities=13% Similarity=0.006 Sum_probs=62.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILS 157 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 157 (769)
.++.|+|+.|.||||+|..++.+.. .+-..++.+. ...+.......++.+++...........++....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 4678999999999999999999872 2223333332 1112222233455566543321112334444444544 23
Q ss_pred cCCEEEEEecccCc--ccccccCCCCCCCCCCcEEEEeeccCCc
Q 046742 158 RKKFVLLLDDIWNR--VDLEKLGIPPMNTNGSSKIVFTTRSAGG 199 (769)
Q Consensus 158 ~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~iivTtR~~~v 199 (769)
++.-+||+|.+.-. +++.++...+ ...|..|++|.++.+.
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 34458999998532 2122221111 2356789999887553
No 268
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.60 E-value=0.001 Score=64.40 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=15.9
Q ss_pred eEEEEeecccccccccCCCCCCCccEEEccCC
Q 046742 393 VIRRMSLMENQVQSLSKIPSCPSLITLFLNNN 424 (769)
Q Consensus 393 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 424 (769)
.+..+++.+..++.+..++.+++|+.|.++.|
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDN 75 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCC
Confidence 44555555444444444444555555555544
No 269
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.60 E-value=0.012 Score=54.74 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL 120 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 120 (769)
++.|+|++|+||||++..++.... ..-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA---TKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH---hcCCEEEEEECCcch
Confidence 367999999999999999998872 233467788766543
No 270
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.58 E-value=0.0043 Score=68.34 Aligned_cols=73 Identities=25% Similarity=0.326 Sum_probs=54.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKI 155 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 155 (769)
..++..++|++|+||||||.-++++. .|. ++=|+.+...+...+-..|...+.... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GYs-VvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GYS-VVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cce-EEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 45689999999999999999999885 232 678888888777777766666654321 1
Q ss_pred H--ccCCEEEEEecccCc
Q 046742 156 L--SRKKFVLLLDDIWNR 171 (769)
Q Consensus 156 l--~~k~~LlVlDdv~~~ 171 (769)
+ .+++.-||+|+++..
T Consensus 382 l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cccCCCcceEEEecccCC
Confidence 1 267888999998764
No 271
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.54 E-value=0.011 Score=58.14 Aligned_cols=122 Identities=15% Similarity=0.058 Sum_probs=68.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc-----cccHHHHHHHHHHHhCCCCcc-----cccccH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR-----DLQIDRLQENIARKIGLYDQS-----WKNKRL 145 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~-----~~~~~~ 145 (769)
.-.+++|+|.+|+||||+++.+..-. ... .+.+++.... .....+-..++++..+..... ..-..-
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---EPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---CCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 44689999999999999999999876 222 3334443222 223445566667776644321 011122
Q ss_pred HHHHHHHHHHHccCCEEEEEecccCccc------ccccCCCCCCCCCCcEEEEeeccCCcccc
Q 046742 146 EIKAADIFKILSRKKFVLLLDDIWNRVD------LEKLGIPPMNTNGSSKIVFTTRSAGGCGL 202 (769)
Q Consensus 146 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~~~~~~~~~~~~~~iivTtR~~~v~~~ 202 (769)
+...-.+.+.+.-++-++|.|+.-+.-| ...+...+ ....|-..+..|-+-.++..
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dl-q~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDL-QEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHH-HHHhCCeEEEEEEEHHhhhh
Confidence 2233345667778899999998644321 11111111 11234556777776665443
No 272
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.53 E-value=0.0099 Score=60.86 Aligned_cols=88 Identities=22% Similarity=0.234 Sum_probs=48.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc-cHHHHHHHHHHHhCCCCcccccccHHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL-QIDRLQENIARKIGLYDQSWKNKRLEIKAADIFK 154 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 154 (769)
..++++|+|++|+||||++..++..+. ....-..+..|+..... .....+..-.+.++.+.. ...+...+...+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~-~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~- 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV-LEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALD- 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHH-
Confidence 346899999999999999999988762 12111345666654422 223333444445554432 2223333333333
Q ss_pred HHccCCEEEEEecc
Q 046742 155 ILSRKKFVLLLDDI 168 (769)
Q Consensus 155 ~l~~k~~LlVlDdv 168 (769)
.+.+ .=++++|..
T Consensus 269 ~~~~-~d~vliDt~ 281 (282)
T TIGR03499 269 RLRD-KDLILIDTA 281 (282)
T ss_pred HccC-CCEEEEeCC
Confidence 3333 347777753
No 273
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.00021 Score=69.11 Aligned_cols=54 Identities=22% Similarity=0.275 Sum_probs=23.3
Q ss_pred eEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCC
Q 046742 393 VIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNN 448 (769)
Q Consensus 393 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 448 (769)
+++.|+++++++..+.-..+++.|.+|.|+-|.++.+.+ |..|++|+.|.|..|
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN 73 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN 73 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc
Confidence 344444444444444333444444444444444443333 334444444444443
No 274
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.49 E-value=0.11 Score=53.80 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=35.0
Q ss_pred eEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHH
Q 046742 208 IFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLAL 256 (769)
Q Consensus 208 ~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 256 (769)
++++++++.+|+..++.-.....-.......+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999877654432222333556677777779999544
No 275
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.49 E-value=0.022 Score=59.42 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=42.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccC---CCCCCcEEEEEEeCccccHHHHHHHHHHHhCCC
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSN---TPNGFDFVIWVVLSRDLQIDRLQENIARKIGLY 136 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 136 (769)
.-.+.-|+|++|+|||+|+.+++-.... ..+.-..++|++....+..+++.+ +++.++..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 3457789999999999999998754310 112234789999988888887655 56666543
No 276
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.49 E-value=0.017 Score=57.62 Aligned_cols=49 Identities=16% Similarity=0.100 Sum_probs=35.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENI 129 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 129 (769)
.-.++.|.|++|+|||++|.+++.... ..-..++|++... +.+++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHHH
Confidence 456899999999999999999877641 2234578887654 455555553
No 277
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.47 E-value=0.00059 Score=76.54 Aligned_cols=113 Identities=25% Similarity=0.268 Sum_probs=69.0
Q ss_pred CCCCCccEEEccCCC-Cccc-chhhhcCCCcceEEEecCC-CCCcccc----ccccCCcCCCEEeccCCC-Ccc--cchh
Q 046742 411 PSCPSLITLFLNNNN-LKVI-TDGFFQFMPSLKVLNLSNN-QSLKQLP----SGISRLVSLQHLNLSLTN-IKE--LPEE 480 (769)
Q Consensus 411 ~~~~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~L~~~-~~~~~lp----~~i~~l~~L~~L~l~~~~-l~~--lp~~ 480 (769)
..++.|+.|.+.++. +... -......+++|+.|+++++ ......+ .....+.+|+.|+++++. ++. +..-
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 347888888888873 3331 1234677888999998873 2222222 233456788888888876 553 2222
Q ss_pred hhcCCCCcEEecCCCcCcCccC-cccccCCcccceeeeeccccc
Q 046742 481 LKALVNLKCLNLDYTKSLCRIP-RHLISNFSMLYILRIVDCHYF 523 (769)
Q Consensus 481 ~~~l~~L~~L~l~~~~~l~~~p-~~~i~~L~~L~~L~l~~~~~~ 523 (769)
...+++|+.|.+.+|..++... .....++++|++|++++|...
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 2347788888877776433221 122455777888888877655
No 278
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.47 E-value=0.0088 Score=71.00 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=37.5
Q ss_pred CCCCCchHHHHHHHHHhcc-------CC--ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGE-------EH--VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~-------~~--~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++|.++.++.+.+.+.. .+ ..++.++|+.|+|||+||+.+++.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 5678999999999888742 11 2356789999999999999999987
No 279
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.46 E-value=0.014 Score=58.55 Aligned_cols=92 Identities=18% Similarity=0.314 Sum_probs=55.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCC-cEEEEEEeCcc-ccHHHHHHHHHHHhCCCCc----cccccc-HH---
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGF-DFVIWVVLSRD-LQIDRLQENIARKIGLYDQ----SWKNKR-LE--- 146 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~~~~~~-~~--- 146 (769)
-..++|.|.+|+|||||++++++... ..| +.++++-++.. ....++.+++.+.-.+... .....+ ..
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~---~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIA---KAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHH---hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 34788999999999999999999872 233 45566666554 3566777776654221110 001111 11
Q ss_pred --HHHHHHHHHH---ccCCEEEEEecccCc
Q 046742 147 --IKAADIFKIL---SRKKFVLLLDDIWNR 171 (769)
Q Consensus 147 --~~~~~l~~~l---~~k~~LlVlDdv~~~ 171 (769)
...-.+-+++ +++.+|+++||+-..
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 1122233444 378999999998543
No 280
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.46 E-value=0.018 Score=61.61 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+.+|.++|+.|+||||.|..++..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998877
No 281
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.46 E-value=0.025 Score=59.27 Aligned_cols=89 Identities=18% Similarity=0.160 Sum_probs=50.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc-cHHHHHHHHHHHhCCCCcccccccHHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL-QIDRLQENIARKIGLYDQSWKNKRLEIKAADIFK 154 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 154 (769)
+.++|+|+|++|+||||++..++..+. ...+ .+..++..... ...+-++..++.++++.. ...+...+...+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~--~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH--HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 457999999999999999999998772 2222 34455554432 233333444445554431 12344444444433
Q ss_pred HHcc-CCEEEEEeccc
Q 046742 155 ILSR-KKFVLLLDDIW 169 (769)
Q Consensus 155 ~l~~-k~~LlVlDdv~ 169 (769)
.-.. +.=++++|-.-
T Consensus 315 lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 315 FKEEARVDYILIDTAG 330 (436)
T ss_pred HHhccCCCEEEEeCcc
Confidence 3221 23477788764
No 282
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.45 E-value=0.0019 Score=62.63 Aligned_cols=109 Identities=30% Similarity=0.289 Sum_probs=81.4
Q ss_pred CCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCC--CCCccccccccCCcCCCEEeccCCCCcccc--hhhhcCCC
Q 046742 411 PSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNN--QSLKQLPSGISRLVSLQHLNLSLTNIKELP--EELKALVN 486 (769)
Q Consensus 411 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~--~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp--~~~~~l~~ 486 (769)
..+..|..|.+.++.++.+.. |..|++|++|.++.| +....++-...++++|++|++++|+|..+. ..+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 456677777788887776654 778999999999999 556667766777799999999999887421 23677888
Q ss_pred CcEEecCCCcCcCccC---cccccCCcccceeeeecccc
Q 046742 487 LKCLNLDYTKSLCRIP---RHLISNFSMLYILRIVDCHY 522 (769)
Q Consensus 487 L~~L~l~~~~~l~~~p---~~~i~~L~~L~~L~l~~~~~ 522 (769)
|..|++.+|.... +- ..++.-+++|.+|+-.+...
T Consensus 118 L~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence 9999999886332 32 23466688999998876543
No 283
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.081 Score=58.53 Aligned_cols=171 Identities=16% Similarity=0.060 Sum_probs=94.8
Q ss_pred CCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHH
Q 046742 58 TLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDR 124 (769)
Q Consensus 58 ~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 124 (769)
+-|..+..+-+.+.+.- .-..-|.++|++|+|||-||-+++.... .-++.+....
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~--------~~fisvKGPE---- 736 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN--------LRFISVKGPE---- 736 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC--------eeEEEecCHH----
Confidence 34666666666666631 1233588999999999999999998761 3456665542
Q ss_pred HHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc-------------cccccCCCCC--CCCCCcE
Q 046742 125 LQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV-------------DLEKLGIPPM--NTNGSSK 189 (769)
Q Consensus 125 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~~~~~~~--~~~~~~~ 189 (769)
++... .+.+.+.....+.+.-..++++|.||+.++.. ....+...+. .+-.|.-
T Consensus 737 ----lL~Ky-------IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~ 805 (952)
T KOG0735|consen 737 ----LLSKY-------IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVY 805 (952)
T ss_pred ----HHHHH-------hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEE
Confidence 22111 12233334444444445699999999987631 1223322222 2234555
Q ss_pred EEEeeccCCc-----cccccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhH
Q 046742 190 IVFTTRSAGG-----CGLMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLA 255 (769)
Q Consensus 190 iivTtR~~~v-----~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 255 (769)
|+-+|..+++ .+-.+-++.+.-+.-++.|-.++|+.....-.... ....+.++.+.+|.--|
T Consensus 806 i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~----~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 806 ILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDT----DVDLECLAQKTDGFTGA 872 (952)
T ss_pred EEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcc----ccchHHHhhhcCCCchh
Confidence 5543333333 22222344455566677888888877654222111 23356677777776643
No 284
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.041 Score=53.02 Aligned_cols=190 Identities=14% Similarity=0.121 Sum_probs=96.2
Q ss_pred cccCCCCCC---CCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEE
Q 046742 50 VEERPIPQT---LGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIW 113 (769)
Q Consensus 50 ~~~~~~~~~---vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~w 113 (769)
++.+|+..+ -|-+..++++.+.+.- ..++-|..+|++|.|||-+|++.+..- ...|-
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT---~aTFL---- 234 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT---NATFL---- 234 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc---cchHH----
Confidence 344444443 4789999999888731 245578899999999999999988775 22221
Q ss_pred EEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHc-cCCEEEEEecccCcc------------c----ccc
Q 046742 114 VVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILS-RKKFVLLLDDIWNRV------------D----LEK 176 (769)
Q Consensus 114 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~------------~----~~~ 176 (769)
++..--+-++.+.+ -..+........+ ..+.+|.+|.++... + .-+
T Consensus 235 ----------KLAgPQLVQMfIGd-------GAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLE 297 (424)
T KOG0652|consen 235 ----------KLAGPQLVQMFIGD-------GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLE 297 (424)
T ss_pred ----------HhcchHHHhhhhcc-------hHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHH
Confidence 11111111222211 1111111222222 457899999875320 0 111
Q ss_pred cCCCCCC--CCCCcEEEEeeccCCcc-----ccccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHc
Q 046742 177 LGIPPMN--TNGSSKIVFTTRSAGGC-----GLMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKEC 249 (769)
Q Consensus 177 ~~~~~~~--~~~~~~iivTtR~~~v~-----~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ 249 (769)
+...+.. .....+||..|..-++. ...+-+..++.+--+++.-..+++-+.-.-+...+..++++++.--..-
T Consensus 298 LLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFN 377 (424)
T KOG0652|consen 298 LLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFN 377 (424)
T ss_pred HHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccC
Confidence 1122222 22356788777655553 2233445677666665555556655554333334445555544322222
Q ss_pred CCchhHHHHHHHHh
Q 046742 250 DGLPLALITIGRAM 263 (769)
Q Consensus 250 ~g~Plai~~~~~~l 263 (769)
|--=.|+.+=|+++
T Consensus 378 GAQcKAVcVEAGMi 391 (424)
T KOG0652|consen 378 GAQCKAVCVEAGMI 391 (424)
T ss_pred chhheeeehhhhHH
Confidence 22223444445544
No 285
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.43 E-value=0.00087 Score=75.19 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=15.9
Q ss_pred CcCCCEEeccCCC-Cc--ccchhhhcCCCCcEEecCCCc
Q 046742 461 LVSLQHLNLSLTN-IK--ELPEELKALVNLKCLNLDYTK 496 (769)
Q Consensus 461 l~~L~~L~l~~~~-l~--~lp~~~~~l~~L~~L~l~~~~ 496 (769)
+++|+.|.+.+|. ++ .+-.-...+++|++|++++|.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4455555544443 33 222223344455555555544
No 286
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.42 E-value=0.041 Score=56.56 Aligned_cols=96 Identities=16% Similarity=0.121 Sum_probs=57.6
Q ss_pred HHHHhccC---CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCccc---c
Q 046742 68 VWRCLGEE---HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSW---K 141 (769)
Q Consensus 68 l~~~L~~~---~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~ 141 (769)
|-..|... .-+++-|+|+.|+||||||.++.... +..-..++|++.....+.. .++++++..+.. +
T Consensus 41 LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~ 112 (322)
T PF00154_consen 41 LDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQ 112 (322)
T ss_dssp HHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE
T ss_pred cchhhccCccccCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhh-----HHHhcCccccceEEec
Confidence 44445433 35689999999999999999998876 2233568999987776554 445566543321 2
Q ss_pred cccHHHHHHHHHHHHccCC-EEEEEecccCc
Q 046742 142 NKRLEIKAADIFKILSRKK-FVLLLDDIWNR 171 (769)
Q Consensus 142 ~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~ 171 (769)
....++....+.+.++... -++|+|-|...
T Consensus 113 P~~~E~al~~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 113 PDTGEQALWIAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp -SSHHHHHHHHHHHHHTTSESEEEEE-CTT-
T ss_pred CCcHHHHHHHHHHHhhcccccEEEEecCccc
Confidence 3344555566666665443 48899987543
No 287
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.42 E-value=0.019 Score=59.60 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=40.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccC---CCCCCcEEEEEEeCccccHHHHHHHHHHHhCC
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSN---TPNGFDFVIWVVLSRDLQIDRLQENIARKIGL 135 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 135 (769)
...++.|+|.+|+|||+|+.+++..... ..+.-..++|++....+..+. +.++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 3568899999999999999998764310 111223679999887766665 4445666554
No 288
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.41 E-value=0.013 Score=62.20 Aligned_cols=94 Identities=23% Similarity=0.282 Sum_probs=54.4
Q ss_pred HHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCccc---c
Q 046742 67 EVWRCLGE--EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSW---K 141 (769)
Q Consensus 67 ~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~ 141 (769)
++-+.|.. ..-.++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++ ..-++.++...+.. .
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~ 143 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLA 143 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEc
Confidence 44444533 2345889999999999999999998872 22246778876433 3333 22344555433221 1
Q ss_pred cccHHHHHHHHHHHHccCCEEEEEeccc
Q 046742 142 NKRLEIKAADIFKILSRKKFVLLLDDIW 169 (769)
Q Consensus 142 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 169 (769)
..+.+.+.+.+. ..+.-++|+|.+.
T Consensus 144 e~~le~I~~~i~---~~~~~lVVIDSIq 168 (372)
T cd01121 144 ETNLEDILASIE---ELKPDLVIIDSIQ 168 (372)
T ss_pred cCcHHHHHHHHH---hcCCcEEEEcchH
Confidence 223333333332 2356688899874
No 289
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.41 E-value=0.0032 Score=72.87 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=38.1
Q ss_pred CCCCCchHHHHHHHHHhcc--------C-CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGE--------E-HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~--------~-~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++|.++.++.|.+.+.. . ....+.++|+.|+|||++|+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999888852 1 23468899999999999999999987
No 290
>PRK08233 hypothetical protein; Provisional
Probab=96.41 E-value=0.011 Score=56.29 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|+|.|++|+||||+|..++..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999999987
No 291
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.41 E-value=0.0089 Score=53.50 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=35.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCC
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLY 136 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 136 (769)
+|.|.|++|+||||+|+.+++++ .. . +| +.-.+++++++..++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~-gl--~-----~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL-GL--K-----LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh-CC--c-----ee------eccHHHHHHHHHcCCC
Confidence 68999999999999999999998 11 1 12 4457899999998864
No 292
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.39 E-value=0.0025 Score=61.62 Aligned_cols=109 Identities=10% Similarity=0.086 Sum_probs=57.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEE-EEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHH
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIW-VVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKIL 156 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 156 (769)
+.|.|+|+.|+||||++..+..... ......++ +.......... ...+..+-. ...+.....+.++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~---~~~~~~i~t~e~~~E~~~~~-~~~~i~q~~------vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN---KNKTHHILTIEDPIEFVHES-KRSLINQRE------VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh---hcCCcEEEEEcCCccccccC-ccceeeecc------cCCCccCHHHHHHHHh
Confidence 5789999999999999999888762 22232333 32211110000 000111101 0112233455667777
Q ss_pred ccCCEEEEEecccCcccccccCCCCCCCCCCcEEEEeeccCCc
Q 046742 157 SRKKFVLLLDDIWNRVDLEKLGIPPMNTNGSSKIVFTTRSAGG 199 (769)
Q Consensus 157 ~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~iivTtR~~~v 199 (769)
+..+=++++|++.+.+........ ...|..++.|+-..++
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSA 111 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcH
Confidence 777779999999766544332111 1224446666655443
No 293
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.39 E-value=0.008 Score=55.38 Aligned_cols=26 Identities=31% Similarity=0.276 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-..+.|+|++|.||||+.+.+|...
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 33578999999999999999999876
No 294
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.38 E-value=0.012 Score=52.49 Aligned_cols=112 Identities=23% Similarity=0.421 Sum_probs=38.1
Q ss_pred eEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccc-cccCCcCCCEEec
Q 046742 393 VIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPS-GISRLVSLQHLNL 469 (769)
Q Consensus 393 ~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l 469 (769)
+++.+.+.. .+..+.. +.++..|+.+.+.++ +..++...|..++.|+.+.+.++ +..++. .+..+.+|+.+.+
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEEE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--cccccccccccccccccccc
Confidence 444444432 3333322 445555555555443 55555555555555555555432 222222 3344555555555
Q ss_pred cCCCCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCccc
Q 046742 470 SLTNIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSML 512 (769)
Q Consensus 470 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L 512 (769)
..+ +..++.. +.++ +|+.+.+..+ +..++...+.++++|
T Consensus 89 ~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 89 PSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp TTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred Ccc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 443 4444333 3333 5555554432 344444444444433
No 295
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.36 E-value=0.025 Score=56.48 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=55.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcc----------------
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQS---------------- 139 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------------- 139 (769)
...++.|+|.+|+|||++|.+++.... ..=..++|+..... .+++.+++ ++++.....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 456899999999999999999976641 22346888887653 45555553 333321110
Q ss_pred --cccccHHHHHHHHHHHHcc-CCEEEEEeccc
Q 046742 140 --WKNKRLEIKAADIFKILSR-KKFVLLLDDIW 169 (769)
Q Consensus 140 --~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 169 (769)
....+.+.....+.+.+.. +.-++|+|.+.
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0122345566666666654 55589999875
No 296
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.013 Score=61.74 Aligned_cols=88 Identities=19% Similarity=0.165 Sum_probs=52.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKI 155 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 155 (769)
..+++++|+.|+||||++.+++.... .+.....+..+..... ....+-++..++.++.+.. ...+.......+ ..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~--~~~~~~~l~~~l-~~ 212 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH--AVKDGGDLQLAL-AE 212 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE--ecCCcccHHHHH-HH
Confidence 46999999999999999999998762 1222234566654432 3455566666677776442 112222222222 33
Q ss_pred HccCCEEEEEeccc
Q 046742 156 LSRKKFVLLLDDIW 169 (769)
Q Consensus 156 l~~k~~LlVlDdv~ 169 (769)
+.++ =++++|..-
T Consensus 213 l~~~-DlVLIDTaG 225 (374)
T PRK14722 213 LRNK-HMVLIDTIG 225 (374)
T ss_pred hcCC-CEEEEcCCC
Confidence 4454 456689874
No 297
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.33 E-value=0.036 Score=58.03 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=44.6
Q ss_pred HHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHhhccCCCC----CCcEEEEEEeCccccHHHHHHHHHHHhC
Q 046742 67 EVWRCLGE--EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPN----GFDFVIWVVLSRDLQIDRLQENIARKIG 134 (769)
Q Consensus 67 ~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 134 (769)
.+.+.|.. ....++-|+|++|+|||+++.+++... .... .=..++||+....++.+.+.+ +++.++
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 34444432 245688899999999999999998775 2111 114789999888777766554 445544
No 298
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.00022 Score=68.94 Aligned_cols=67 Identities=27% Similarity=0.509 Sum_probs=31.2
Q ss_pred cccCCCCCcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccch-hhhcCCCcceEEEecCC
Q 046742 382 LTEAPETGKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITD-GFFQFMPSLKVLNLSNN 448 (769)
Q Consensus 382 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~ 448 (769)
+.++.-..+++.|+.|+|+-|.++.+..+..|.+|+.|+|..|.|..+.. ..+.++++||+|-|..|
T Consensus 31 L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 31 LDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred ccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 33333333444455555555555555555555555555555554443321 11344444454444444
No 299
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.32 E-value=0.0047 Score=67.38 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=40.6
Q ss_pred CCCCCchHHHHHHHHHh------ccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCL------GEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L------~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++|.++.+++|++.| .+...+++.++||+|+||||||+.++.-+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 35689999999999998 23566799999999999999999999987
No 300
>PTZ00035 Rad51 protein; Provisional
Probab=96.32 E-value=0.036 Score=58.10 Aligned_cols=67 Identities=25% Similarity=0.330 Sum_probs=43.8
Q ss_pred HHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHhhccCC----CCCCcEEEEEEeCccccHHHHHHHHHHHhCC
Q 046742 67 EVWRCLGE--EHVGIIGLYGMGEVGKTTLLTRINNKFSNT----PNGFDFVIWVVLSRDLQIDRLQENIARKIGL 135 (769)
Q Consensus 67 ~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 135 (769)
.+-++|.. ..-.++.|+|++|+|||||+.+++-.. .. .+.-..++|++....++.++ +.++++.++.
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~ 178 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGL 178 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCC
Confidence 34444433 235688999999999999999987654 21 11234677998877666665 4445666554
No 301
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.024 Score=54.77 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=36.2
Q ss_pred CCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 59 LGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 59 vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
=|-.+.+++|.+...- +.++-|.++|++|.|||-+|++|+++-
T Consensus 180 ggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 180 GGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 3788889999887742 456678899999999999999999986
No 302
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.29 E-value=0.036 Score=53.41 Aligned_cols=82 Identities=18% Similarity=0.190 Sum_probs=45.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCc---EEEEEEeCccccHHHHHHHHHHHh--CCCCcccccccHHHHHHHHH
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKFSNTPNGFD---FVIWVVLSRDLQIDRLQENIARKI--GLYDQSWKNKRLEIKAADIF 153 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~~~l~ 153 (769)
||+|.|++|+||||+|+.+...+. . .... ....+............. ..... ..........+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~-~-~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN-K-RGIPAMEMDIILSLDDFYDDYHLRD-RKGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT-T-CTTTCCCSEEEEEGGGGBHHHHHHH-HHHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-c-cCcCccceeEEEeecccccccchhh-HhhccccccCCCCccccCHHHHHHHHH
Confidence 699999999999999999999883 1 2222 233333222221111111 11111 11112235567777777777
Q ss_pred HHHccCCEEE
Q 046742 154 KILSRKKFVL 163 (769)
Q Consensus 154 ~~l~~k~~Ll 163 (769)
...+++.+-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666665443
No 303
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.011 Score=56.44 Aligned_cols=79 Identities=18% Similarity=0.160 Sum_probs=46.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKI 155 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 155 (769)
++-+|+|.|.+|+||||+|+.++..+ +...-.+ ++..... ...-.....+......+....-+.+-..+.+...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~~~~--I~~D~YY-k~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEKVVV--ISLDDYY-KDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCcceE--eeccccc-cchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 34689999999999999999999998 3232111 2111110 1111111222222222333556677777888888
Q ss_pred HccCC
Q 046742 156 LSRKK 160 (769)
Q Consensus 156 l~~k~ 160 (769)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88876
No 304
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.26 E-value=0.0092 Score=56.19 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.|.|.|++|+||||+|+.+++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999997
No 305
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.023 Score=60.32 Aligned_cols=90 Identities=13% Similarity=0.131 Sum_probs=54.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCC-CCCcEEEEEEeCccc-cHHHHHHHHHHHhCCCCcccccccHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTP-NGFDFVIWVVLSRDL-QIDRLQENIARKIGLYDQSWKNKRLEIKAADIF 153 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 153 (769)
..++|.++|+.|+||||.+..++..+.... ..-..+..++..... ....-++..++.++.+.. ...+.+.....+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 357899999999999999999998762111 122345556655432 233336666666766432 2334444444443
Q ss_pred HHHccCCEEEEEeccc
Q 046742 154 KILSRKKFVLLLDDIW 169 (769)
Q Consensus 154 ~~l~~k~~LlVlDdv~ 169 (769)
+. .+.-++++|.+.
T Consensus 251 ~~--~~~DlVLIDTaG 264 (388)
T PRK12723 251 QS--KDFDLVLVDTIG 264 (388)
T ss_pred Hh--CCCCEEEEcCCC
Confidence 32 345688899874
No 306
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.26 E-value=0.0086 Score=56.59 Aligned_cols=75 Identities=25% Similarity=0.380 Sum_probs=43.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKI 155 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 155 (769)
...-+.++|+.|+|||.||..+++... ...+. +.|+ +..+++..+-..-. ...... +.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~--~~g~~-v~f~------~~~~L~~~l~~~~~-------~~~~~~----~~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI--RKGYS-VLFI------TASDLLDELKQSRS-------DGSYEE----LLKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH--HTT---EEEE------EHHHHHHHHHCCHC-------CTTHCH----HHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc--cCCcc-eeEe------ecCceecccccccc-------ccchhh----hcCc
Confidence 345789999999999999999998873 23333 5666 45556665543211 111112 2233
Q ss_pred HccCCEEEEEecccCc
Q 046742 156 LSRKKFVLLLDDIWNR 171 (769)
Q Consensus 156 l~~k~~LlVlDdv~~~ 171 (769)
+. +-=||||||+...
T Consensus 106 l~-~~dlLilDDlG~~ 120 (178)
T PF01695_consen 106 LK-RVDLLILDDLGYE 120 (178)
T ss_dssp HH-TSSCEEEETCTSS
T ss_pred cc-cccEeccccccee
Confidence 33 2348889998643
No 307
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.25 E-value=0.0077 Score=68.13 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=60.6
Q ss_pred cccCCCCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHH
Q 046742 50 VEERPIPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENI 129 (769)
Q Consensus 50 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 129 (769)
+++.....++|.++.++.|...+... +.+.++|++|+||||+|+.+++.+. ...++..+|+.-+.. +...+++.+
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~np~~-~~~~~~~~v 99 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPNPED-PNNPKIRTV 99 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeCCCc-chHHHHHHH
Confidence 34445577899999999988877655 4788999999999999999998872 344677888766443 677777777
Q ss_pred HHHhC
Q 046742 130 ARKIG 134 (769)
Q Consensus 130 ~~~l~ 134 (769)
+..++
T Consensus 100 ~~~~G 104 (637)
T PRK13765 100 PAGKG 104 (637)
T ss_pred HHhcC
Confidence 76554
No 308
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.25 E-value=0.058 Score=56.30 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+.+.++|+.|+||||+|+.++...
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 4467899999999999999998876
No 309
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.24 E-value=0.0076 Score=61.17 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=35.0
Q ss_pred HHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHH
Q 046742 66 DEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQ 126 (769)
Q Consensus 66 ~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 126 (769)
..+++.+...+. -|.++|+.|+|||++++.+.... . ...| .+.-++.+...+...++
T Consensus 23 ~~ll~~l~~~~~-pvLl~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~q 79 (272)
T PF12775_consen 23 SYLLDLLLSNGR-PVLLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQLQ 79 (272)
T ss_dssp HHHHHHHHHCTE-EEEEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHHH
T ss_pred HHHHHHHHHcCC-cEEEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHHH
Confidence 345555554544 55799999999999999998876 2 2222 23445555544444433
No 310
>PRK06921 hypothetical protein; Provisional
Probab=96.24 E-value=0.023 Score=57.53 Aligned_cols=38 Identities=29% Similarity=0.266 Sum_probs=28.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEE
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVV 115 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 115 (769)
....+.++|..|+|||.||..+++... ...-..++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEE
Confidence 456789999999999999999999872 22123456665
No 311
>PRK06547 hypothetical protein; Provisional
Probab=96.22 E-value=0.0068 Score=56.87 Aligned_cols=34 Identities=21% Similarity=0.130 Sum_probs=28.1
Q ss_pred HHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 68 VWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 68 l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+...+......+|+|.|++|+||||+|+.++...
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344555778899999999999999999999875
No 312
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.21 E-value=0.028 Score=61.31 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=48.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc-cHHHHHHHHHHHhCCCCcccccccHHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL-QIDRLQENIARKIGLYDQSWKNKRLEIKAADIFK 154 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 154 (769)
...+|+|+|++|+||||++..++..+. .++....+..++..... .....+....+.+++... ...+...+...+ +
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la-~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL-~ 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFA-AQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLL-E 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHH-H
Confidence 357999999999999999999988762 22222345555543321 222223333334443221 122333333333 3
Q ss_pred HHccCCEEEEEeccc
Q 046742 155 ILSRKKFVLLLDDIW 169 (769)
Q Consensus 155 ~l~~k~~LlVlDdv~ 169 (769)
.+.+ .=+||+|..-
T Consensus 425 ~l~~-~DLVLIDTaG 438 (559)
T PRK12727 425 RLRD-YKLVLIDTAG 438 (559)
T ss_pred Hhcc-CCEEEecCCC
Confidence 3333 4488888864
No 313
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.087 Score=53.96 Aligned_cols=51 Identities=27% Similarity=0.183 Sum_probs=38.4
Q ss_pred CCCCCchHHHHHHHHHhcc--------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCc
Q 046742 56 PQTLGLESTFDEVWRCLGE--------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFD 109 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~--------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~ 109 (769)
..+-|-+..++++.+...= ...+-|.++||+|+|||-+|+.++.+. ...|-
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fI 156 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA---GANFI 156 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc---CCCcc
Confidence 3345778888888776521 245578899999999999999999997 55554
No 314
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.19 E-value=0.0075 Score=64.97 Aligned_cols=44 Identities=11% Similarity=0.043 Sum_probs=38.5
Q ss_pred CCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++||++.++.+...+..+ ..|.|.|++|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 45799999999998888755 467799999999999999999976
No 315
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.19 E-value=0.029 Score=53.70 Aligned_cols=48 Identities=17% Similarity=0.321 Sum_probs=37.5
Q ss_pred CCCCCCCchHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 54 PIPQTLGLESTFDEVWRCLG----EEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 54 ~~~~~vGr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
....++|-|...+.+.+--. .-...-|.++|.-|+|||+|++++.+.+
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 34566898888888866443 2344568899999999999999999988
No 316
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.18 E-value=0.028 Score=57.05 Aligned_cols=91 Identities=21% Similarity=0.157 Sum_probs=50.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc-cHHHHHHHHHHHhCCCCcc-cccccHHHH-HHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL-QIDRLQENIARKIGLYDQS-WKNKRLEIK-AADI 152 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~l 152 (769)
..++++++|++|+||||.+..++..+. ..-..+.+++..... ...+-+...++..+.+... ....+.... ...+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~---~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK---KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 457999999999999999999998872 222356666655321 1223333344555533210 011222222 2333
Q ss_pred HHHHccCCEEEEEeccc
Q 046742 153 FKILSRKKFVLLLDDIW 169 (769)
Q Consensus 153 ~~~l~~k~~LlVlDdv~ 169 (769)
.....+..=++|+|-.-
T Consensus 148 ~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHCCCCEEEEeCCC
Confidence 33333444578888764
No 317
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.18 E-value=0.0055 Score=54.78 Aligned_cols=24 Identities=42% Similarity=0.443 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..|+|.|++|+||||+++.+++.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468999999999999999999988
No 318
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.057 Score=59.84 Aligned_cols=172 Identities=13% Similarity=0.093 Sum_probs=89.7
Q ss_pred CCCCCchHHHHHHHHH---hccC---------CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 56 PQTLGLESTFDEVWRC---LGEE---------HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~---L~~~---------~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
...-|.++..+++.+. |.++ -++-|.++|++|.|||.||++++... .+ ..| ..|.+.-++
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~V-PFf------~iSGS~FVe 221 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GV-PFF------SISGSDFVE 221 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CC-Cce------eccchhhhh
Confidence 4557988877766554 4442 24568899999999999999999997 33 222 222221111
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc----------------cccccCCCCCCC--C
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV----------------DLEKLGIPPMNT--N 185 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~~~~~~~~~--~ 185 (769)
.+ .........+.+.+..+.-++++++|.++... -+.++..-.... +
T Consensus 222 --------mf-------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 222 --------MF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred --------hh-------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 11 11112223344445555667999999886421 122221112222 2
Q ss_pred CCcEEEEeeccCCccc-----cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchh
Q 046742 186 GSSKIVFTTRSAGGCG-----LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPL 254 (769)
Q Consensus 186 ~~~~iivTtR~~~v~~-----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 254 (769)
.|..|+..|...+|.. -.+-+..+.++..+...-.++++-++........-++. .|++.+-|.-.
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~----~iAr~tpGfsG 356 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLK----KIARGTPGFSG 356 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHH----HHhhhCCCccc
Confidence 3333333344444432 12334556666666666666776555433322222222 27777766654
No 319
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.037 Score=57.48 Aligned_cols=96 Identities=24% Similarity=0.306 Sum_probs=59.8
Q ss_pred HHHHHHHhccC--CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcc---
Q 046742 65 FDEVWRCLGEE--HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQS--- 139 (769)
Q Consensus 65 ~~~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--- 139 (769)
+.++-+.|... .-.+|.|-|-+|||||||..+++.++. ..- .+.+|+..... .+ .+--++.+++..+.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES~--~Q-iklRA~RL~~~~~~l~l 151 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEESL--QQ-IKLRADRLGLPTNNLYL 151 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcCH--HH-HHHHHHHhCCCccceEE
Confidence 44555666542 345889999999999999999999982 222 67888655542 22 23345667654432
Q ss_pred cccccHHHHHHHHHHHHccCCEEEEEecccC
Q 046742 140 WKNKRLEIKAADIFKILSRKKFVLLLDDIWN 170 (769)
Q Consensus 140 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 170 (769)
....+.+.....+.+ .++-++|+|-+..
T Consensus 152 ~aEt~~e~I~~~l~~---~~p~lvVIDSIQT 179 (456)
T COG1066 152 LAETNLEDIIAELEQ---EKPDLVVIDSIQT 179 (456)
T ss_pred ehhcCHHHHHHHHHh---cCCCEEEEeccce
Confidence 123333333333322 5778999998854
No 320
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.081 Score=52.03 Aligned_cols=43 Identities=30% Similarity=0.314 Sum_probs=36.0
Q ss_pred CCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 59 LGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 59 vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
=|-|+.+.+|.+...- ..++-|.++|.+|.|||-||++|++.-
T Consensus 188 GGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT 243 (440)
T KOG0726|consen 188 GGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT 243 (440)
T ss_pred ccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc
Confidence 3789999999888741 245678899999999999999999986
No 321
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.14 E-value=0.046 Score=57.18 Aligned_cols=87 Identities=21% Similarity=0.161 Sum_probs=51.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKI 155 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 155 (769)
.++|+++||.|+||||-...++.++ .....-..+..++.... .....-++.-++-++++.. ...+..+....+..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~--vv~~~~el~~ai~~- 278 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--VVYSPKELAEAIEA- 278 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE--EecCHHHHHHHHHH-
Confidence 6899999999999986555555555 21233345667766553 3556666667777777653 33444444443333
Q ss_pred HccCCEEEEEecc
Q 046742 156 LSRKKFVLLLDDI 168 (769)
Q Consensus 156 l~~k~~LlVlDdv 168 (769)
+++.. ++.+|-+
T Consensus 279 l~~~d-~ILVDTa 290 (407)
T COG1419 279 LRDCD-VILVDTA 290 (407)
T ss_pred hhcCC-EEEEeCC
Confidence 33443 4444654
No 322
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.14 E-value=0.052 Score=56.74 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=41.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCC----CCCcEEEEEEeCccccHHHHHHHHHHHhCC
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTP----NGFDFVIWVVLSRDLQIDRLQENIARKIGL 135 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 135 (769)
...++-|+|++|+|||+++.+++... ... ..-..++||+....++.+.+. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 35688899999999999999998775 211 111378999988877777654 44555543
No 323
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.12 E-value=0.041 Score=54.68 Aligned_cols=41 Identities=22% Similarity=0.135 Sum_probs=30.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD 119 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 119 (769)
.-..+.|.|.+|+|||++|.+++.... ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC
Confidence 456899999999999999999876541 12346788876443
No 324
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.11 E-value=0.051 Score=56.75 Aligned_cols=90 Identities=17% Similarity=0.074 Sum_probs=54.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc-cHHHHHHHHHHHhCCCCcccccccHHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL-QIDRLQENIARKIGLYDQSWKNKRLEIKAADIFK 154 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 154 (769)
+.++++++|+.|+||||++..++.... .+ . ..+.+++..... ....-++..++.++.+.. ...+..+....+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~-~~-g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL-KQ-N-RTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-Hc-C-CeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 467899999999999999999988762 12 2 346677765543 234445555666655332 23445555444433
Q ss_pred HHc-cCCEEEEEecccC
Q 046742 155 ILS-RKKFVLLLDDIWN 170 (769)
Q Consensus 155 ~l~-~k~~LlVlDdv~~ 170 (769)
.-. +..=++++|-.-.
T Consensus 280 l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 280 MTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHhcCCCCEEEEECCCC
Confidence 221 3345788887643
No 325
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.10 E-value=0.025 Score=52.38 Aligned_cols=119 Identities=17% Similarity=0.171 Sum_probs=62.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcE--EEEEEeCccccHHHHHHHHHH---HhCCCCccccccc-------
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDF--VIWVVLSRDLQIDRLQENIAR---KIGLYDQSWKNKR------- 144 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~i~~---~l~~~~~~~~~~~------- 144 (769)
.+.|-|++..|.||||.|..++.+.. ...+.+ +=|+...........+..+.- +.+... .+...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~-~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL--GHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGF-TWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH--HCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCC-eecCCCcHHHHHH
Confidence 36788888899999999999988872 233332 124443322233334433200 001100 011111
Q ss_pred HHHHHHHHHHHHccCCE-EEEEecccCc-----ccccccCCCCCCCCCCcEEEEeeccCC
Q 046742 145 LEIKAADIFKILSRKKF-VLLLDDIWNR-----VDLEKLGIPPMNTNGSSKIVFTTRSAG 198 (769)
Q Consensus 145 ~~~~~~~l~~~l~~k~~-LlVlDdv~~~-----~~~~~~~~~~~~~~~~~~iivTtR~~~ 198 (769)
..+..+..++.+...+| ++|||++-.. -+.+++...+.....+..||+|-|+..
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 22233334445555555 9999997432 122223222334455678999999763
No 326
>PRK04328 hypothetical protein; Provisional
Probab=96.10 E-value=0.029 Score=56.43 Aligned_cols=41 Identities=15% Similarity=0.057 Sum_probs=30.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD 119 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 119 (769)
.-.++.|.|.+|+|||+||.+++.... ..-..++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~---~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEEeeCC
Confidence 456899999999999999999877641 22345788876553
No 327
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.10 E-value=0.03 Score=53.92 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=28.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCC-------CcEEEEEEeCcc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNG-------FDFVIWVVLSRD 119 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~-------f~~~~wv~~~~~ 119 (769)
.++.|+|++|+||||++.+++......... -..++|+.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488899999999999999998877321111 136788876655
No 328
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.09 E-value=0.025 Score=58.92 Aligned_cols=46 Identities=28% Similarity=0.293 Sum_probs=32.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIAR 131 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 131 (769)
...+.++|+.|+|||.||..+++... ...+ .+++++ ..+++..+..
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~--~~g~-~V~y~t------~~~l~~~l~~ 228 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL--DRGK-SVIYRT------ADELIEILRE 228 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH--HCCC-eEEEEE------HHHHHHHHHH
Confidence 36799999999999999999999873 2223 456663 4445554443
No 329
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.07 E-value=0.022 Score=57.54 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=27.4
Q ss_pred HHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 70 RCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 70 ~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+++.+.+..+|.|.|.+|+|||||+..+...+
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33344678899999999999999999999987
No 330
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.05 E-value=0.007 Score=59.60 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.|.|.|++|+||||+|+.+++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 331
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.04 E-value=0.021 Score=60.57 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=34.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCC
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLY 136 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~ 136 (769)
..+++++|++|+||||++.+++... .....+ .+..++.... ......++..++.++.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~-~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp 281 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY-FLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMP 281 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCC
Confidence 3579999999999999999998754 112222 3344443332 12334444445555543
No 332
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.1 Score=51.57 Aligned_cols=170 Identities=16% Similarity=0.206 Sum_probs=89.1
Q ss_pred CCCCCchHHHHHHHHHhc----------cC--CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 56 PQTLGLESTFDEVWRCLG----------EE--HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~----------~~--~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
..+.|.|...+.|.+... .. .-+-|.++|++|.|||-||++|+-.. .. -|..++..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nS-----TFFSvSSS---- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NS-----TFFSVSSS---- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CC-----ceEEeehH----
Confidence 344688888888887662 12 24568899999999999999999987 22 23344433
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHc-cCCEEEEEecccCc---------ccccc----cCCCCC---CCCC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILS-RKKFVLLLDDIWNR---------VDLEK----LGIPPM---NTNG 186 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~---------~~~~~----~~~~~~---~~~~ 186 (769)
++. -+.++- .+.++..+.+..+ +|+.+|.+|+|+.. +.-.. +..... ....
T Consensus 201 DLv---SKWmGE---------SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~ 268 (439)
T KOG0739|consen 201 DLV---SKWMGE---------SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDND 268 (439)
T ss_pred HHH---HHHhcc---------HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCC
Confidence 111 122221 2233334444333 58899999999742 11111 111121 2223
Q ss_pred CcEEEEeeccCCccccc---cccceEEcCCCCHHHHHH-HHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 187 SSKIVFTTRSAGGCGLM---EAHRIFKVKCLEHKEAWE-LFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 187 ~~~iivTtR~~~v~~~~---~~~~~~~l~~l~~~~a~~-l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
|.-|+=.|..+=+.... +-...|.+ ||.+..|.. +|+-.++... ..-.+.-.++++++..|.-
T Consensus 269 gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp---~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTP---HVLTEQDFKELARKTEGYS 335 (439)
T ss_pred ceEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCc---cccchhhHHHHHhhcCCCC
Confidence 33333344433222211 11122333 455555554 5655555432 2233455677777777654
No 333
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.02 E-value=0.024 Score=56.26 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=24.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+..+|+|.|+.|.|||||++.++...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999887
No 334
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.02 E-value=0.0054 Score=54.63 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 046742 80 IGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 80 v~I~G~gGiGKTtLa~~~~~~~ 101 (769)
|+|.|++|+||||+|+++....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999984
No 335
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.01 E-value=0.048 Score=57.03 Aligned_cols=58 Identities=26% Similarity=0.371 Sum_probs=42.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCC----CCCcEEEEEEeCccccHHHHHHHHHHHhCC
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTP----NGFDFVIWVVLSRDLQIDRLQENIARKIGL 135 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 135 (769)
...++-|+|.+|+|||+++.+++-.. ... +.-..++|++....+..+++. ++++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~-~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTC-QLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHh-hcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 34578899999999999999888553 111 122378999999888887764 56666654
No 336
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.99 E-value=0.017 Score=65.57 Aligned_cols=80 Identities=18% Similarity=0.161 Sum_probs=55.2
Q ss_pred cccCCCCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHH
Q 046742 50 VEERPIPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENI 129 (769)
Q Consensus 50 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 129 (769)
+|+...+.++|.++.++.+...+... +.+.++|++|+||||+|+.+++.+. ...|...+++.-+. .+...+++.+
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n~~-~~~~~~~~~v 86 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPNPE-DPNMPRIVEV 86 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeCCC-CCchHHHHHH
Confidence 44455578899999998888877654 3566999999999999999999872 23344344443332 2445556666
Q ss_pred HHHhC
Q 046742 130 ARKIG 134 (769)
Q Consensus 130 ~~~l~ 134 (769)
+..++
T Consensus 87 ~~~~g 91 (608)
T TIGR00764 87 PAGEG 91 (608)
T ss_pred HHhhc
Confidence 66554
No 337
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.96 E-value=0.0066 Score=55.27 Aligned_cols=36 Identities=25% Similarity=0.138 Sum_probs=27.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEE
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVV 115 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 115 (769)
..+|.|+|.+|+||||||+++...+. ..-..+++++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~---~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLF---ARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH---HTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEec
Confidence 35899999999999999999999982 3334566664
No 338
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.96 E-value=0.0076 Score=57.61 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+|.|+|++|+||||+|+.++..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999986
No 339
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.95 E-value=0.017 Score=61.74 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=53.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCCc----ccccccH-H---
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYDQ----SWKNKRL-E--- 146 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~-~--- 146 (769)
.-..++|+|..|+|||||++.++... . .+.++.+-++.. ....++..+++..-++... .....+. .
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~-~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----T-ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----C-CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 34578999999999999999998754 2 245555656554 3456666666544222110 0011111 1
Q ss_pred --HHHHHHHHHH--ccCCEEEEEecccC
Q 046742 147 --IKAADIFKIL--SRKKFVLLLDDIWN 170 (769)
Q Consensus 147 --~~~~~l~~~l--~~k~~LlVlDdv~~ 170 (769)
..+-.+-+++ +++++|+++||+-.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 1111233333 57999999999854
No 340
>PRK04040 adenylate kinase; Provisional
Probab=95.95 E-value=0.031 Score=53.33 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+|+|+|++|+||||+++.++..+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999987
No 341
>PRK07667 uridine kinase; Provisional
Probab=95.94 E-value=0.0097 Score=57.28 Aligned_cols=37 Identities=24% Similarity=0.472 Sum_probs=29.5
Q ss_pred HHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 65 FDEVWRCLGE--EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 65 ~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.++|.+.+.. +...+|+|.|++|+||||+|..+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556666643 345689999999999999999999987
No 342
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.94 E-value=0.23 Score=50.95 Aligned_cols=167 Identities=14% Similarity=0.082 Sum_probs=90.8
Q ss_pred HHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHhhcc-------CCCCCCcEEEEEEe-CccccHHHHHHHHHHHhCC
Q 046742 65 FDEVWRCLGEEHVG-IIGLYGMGEVGKTTLLTRINNKFS-------NTPNGFDFVIWVVL-SRDLQIDRLQENIARKIGL 135 (769)
Q Consensus 65 ~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~~~~~~~-------~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~ 135 (769)
++.+.+.+..++.+ +..++|..|.||+++|..+++..- ....+-+.+.+++. +.....+++ +++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhcc
Confidence 45566666665544 555899999999999999988751 00111112333321 111222222 233333321
Q ss_pred CCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc--ccccCCCCCCCCCCcEEEEeecc-CCcccc-ccccceEEc
Q 046742 136 YDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD--LEKLGIPPMNTNGSSKIVFTTRS-AGGCGL-MEAHRIFKV 211 (769)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~iivTtR~-~~v~~~-~~~~~~~~l 211 (769)
.. .-.+++-++|+|+++...+ ...+.-.+..-..++.+|++|.+ ..+... ......+++
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f 146 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNV 146 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEEC
Confidence 11 0014677899999865432 22222222222345666665543 333332 234578999
Q ss_pred CCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHH
Q 046742 212 KCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALIT 258 (769)
Q Consensus 212 ~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 258 (769)
.++++++..+.+... + . ..+.+..++...+|.-.|+..
T Consensus 147 ~~l~~~~l~~~l~~~-~-~-------~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 147 KEPDQQKILAKLLSK-N-K-------EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCHHHHHHHHHHc-C-C-------ChhHHHHHHHHcCCHHHHHHH
Confidence 999999999887654 1 1 134566777777773344444
No 343
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.93 E-value=0.027 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+|.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999987
No 344
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.92 E-value=0.017 Score=61.08 Aligned_cols=75 Identities=15% Similarity=0.178 Sum_probs=48.8
Q ss_pred CCCCCchHHHHHHHHHhcc--------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCC---cEEEEEEeC-
Q 046742 56 PQTLGLESTFDEVWRCLGE--------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGF---DFVIWVVLS- 117 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~--------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f---~~~~wv~~~- 117 (769)
..+||.++.+..+.-.+.. -..+.|.++|++|+|||++|+.++... ...| +...++..+
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l---~~~fi~vdat~~~e~g~ 88 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFTEVGY 88 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEeecceeecCCc
Confidence 4578999888888655532 124678999999999999999999987 2333 222222221
Q ss_pred ccccHHHHHHHHHHHh
Q 046742 118 RDLQIDRLQENIARKI 133 (769)
Q Consensus 118 ~~~~~~~~~~~i~~~l 133 (769)
...+.+.+++.+....
T Consensus 89 vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 89 VGRDVESMVRDLTDAA 104 (441)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 2235666666665543
No 345
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.89 E-value=0.0069 Score=47.09 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+|+|.|..|+||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999985
No 346
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.89 E-value=0.034 Score=56.14 Aligned_cols=127 Identities=18% Similarity=0.059 Sum_probs=66.5
Q ss_pred HHHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCC-CCcc---
Q 046742 65 FDEVWRCLGE-EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGL-YDQS--- 139 (769)
Q Consensus 65 ~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~--- 139 (769)
.++++..+.+ ....-++|+|+.|+||||+.+.++.... .....+++....- ...+-..+++..... +...
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v-~~~d~~~ei~~~~~~~~q~~~~~ 172 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKV-GIVDERSEIAGCVNGVPQHDVGI 172 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEe-ecchhHHHHHHHhcccccccccc
Confidence 3444444433 3456789999999999999999998872 2233344421111 111111233332221 1110
Q ss_pred -cccccHHHHHHHHHHHHc-cCCEEEEEecccCcccccccCCCCCCCCCCcEEEEeeccCCc
Q 046742 140 -WKNKRLEIKAADIFKILS-RKKFVLLLDDIWNRVDLEKLGIPPMNTNGSSKIVFTTRSAGG 199 (769)
Q Consensus 140 -~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~iivTtR~~~v 199 (769)
.+..+-......+...+. ..+=++|+|++...+.+..+...+ ..|..||+||-+..+
T Consensus 173 r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 173 RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDV 231 (270)
T ss_pred cccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHH
Confidence 011111111223444443 467899999987665555443322 246678888886544
No 347
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.88 E-value=0.026 Score=55.98 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=33.3
Q ss_pred CCCchHHHHHHHHHhcc-------CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 58 TLGLESTFDEVWRCLGE-------EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 58 ~vGr~~~~~~l~~~L~~-------~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
++|..-..+.++..+.. .++-+++.+|++|+||.-+++.+++..
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 35665555556555532 355689999999999999999999987
No 348
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.88 E-value=0.04 Score=55.43 Aligned_cols=90 Identities=16% Similarity=0.106 Sum_probs=55.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhC---CCCcccccccHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIG---LYDQSWKNKRLEIKAADI 152 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~---~~~~~~~~~~~~~~~~~l 152 (769)
.-+++=|+|+.|.||||+|.+++-.. +..-..++|++....++.+.+..-....+. ...+ .......+.++.+
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~-~~~e~q~~i~~~~ 134 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQP-DTGEQQLEIAEKL 134 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecC-CCHHHHHHHHHHH
Confidence 45578899999999999999988876 333347899999888887765443222121 1111 1222233334444
Q ss_pred HHHHccCCEEEEEeccc
Q 046742 153 FKILSRKKFVLLLDDIW 169 (769)
Q Consensus 153 ~~~l~~k~~LlVlDdv~ 169 (769)
.+....+--|+|+|.+-
T Consensus 135 ~~~~~~~i~LvVVDSva 151 (279)
T COG0468 135 ARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHhccCCCCEEEEecCc
Confidence 44433434588888874
No 349
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.88 E-value=0.046 Score=59.28 Aligned_cols=87 Identities=22% Similarity=0.219 Sum_probs=49.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc-cHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL-QIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKI 155 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 155 (769)
.++++++|++|+||||++..++..+ .....-..+..|+..... .....++.-++.++++.. ...+.++....+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 4589999999999999999988776 201222346667655432 122333344455554432 22333444444433
Q ss_pred HccCCEEEEEecc
Q 046742 156 LSRKKFVLLLDDI 168 (769)
Q Consensus 156 l~~k~~LlVlDdv 168 (769)
+. ..=++|+|..
T Consensus 297 ~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 LR-DCDVILIDTA 308 (424)
T ss_pred hC-CCCEEEEeCC
Confidence 23 3457888965
No 350
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.84 E-value=0.022 Score=54.25 Aligned_cols=120 Identities=18% Similarity=0.144 Sum_probs=61.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc--cccHHH------HHHHHHHHhCCCCc---ccc-cc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR--DLQIDR------LQENIARKIGLYDQ---SWK-NK 143 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~------~~~~i~~~l~~~~~---~~~-~~ 143 (769)
.-.+++|.|+.|.|||||++.++... ....+.+++.... ..+... ..-++++.+++... ... -.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 34589999999999999999999876 2223334443211 111111 11224555554321 011 11
Q ss_pred cHHHHHHHHHHHHccCCEEEEEecccCccc---ccccCCCCCC--CCCCcEEEEeeccCCc
Q 046742 144 RLEIKAADIFKILSRKKFVLLLDDIWNRVD---LEKLGIPPMN--TNGSSKIVFTTRSAGG 199 (769)
Q Consensus 144 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~~~~--~~~~~~iivTtR~~~v 199 (769)
.-+...-.+-+.+-..+-++++|+.-..-| .+.+...+.. ...+..||++|.+.+.
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 122333334555666778999998754322 1111111111 1115567888876553
No 351
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.84 E-value=0.017 Score=56.15 Aligned_cols=14 Identities=21% Similarity=0.468 Sum_probs=10.1
Q ss_pred ccccccEEEEecCc
Q 046742 627 QFHSLYYVVVSDCN 640 (769)
Q Consensus 627 ~~~~L~~L~l~~c~ 640 (769)
.++.|+.|.+.+|-
T Consensus 240 ~W~~lrEL~lnDCl 253 (388)
T COG5238 240 EWNLLRELRLNDCL 253 (388)
T ss_pred ccchhhhccccchh
Confidence 35668888888883
No 352
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.83 E-value=0.0078 Score=54.78 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+|.++|++|+||||+|+.++...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57899999999999999999886
No 353
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.82 E-value=0.013 Score=54.91 Aligned_cols=42 Identities=21% Similarity=0.120 Sum_probs=32.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCC-CCCcEEEEEEeCcccc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTP-NGFDFVIWVVLSRDLQ 121 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~~~~ 121 (769)
..++.+.|+.|+|||.+|+.+++.+ . +.....+-++++....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l---~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELL---FVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHH---T-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHh---ccCCccchHHHhhhcccc
Confidence 3578899999999999999999998 3 4555666677666544
No 354
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.80 E-value=0.03 Score=52.98 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|+|+|++|+||||+|+.++...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999987
No 355
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.78 E-value=0.016 Score=50.23 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=33.1
Q ss_pred CCCCchHHHHHHHHHh----cc---CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 57 QTLGLESTFDEVWRCL----GE---EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L----~~---~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.++|..-..+.+.+.+ .. +.+-|++.+|++|+|||.+++.+++.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3566665555555555 32 356689999999999999999998884
No 356
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.78 E-value=0.076 Score=55.75 Aligned_cols=90 Identities=18% Similarity=0.194 Sum_probs=54.6
Q ss_pred HHHHHHHhcc---------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeC-ccccHHHHHHHHHHHhC
Q 046742 65 FDEVWRCLGE---------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLS-RDLQIDRLQENIARKIG 134 (769)
Q Consensus 65 ~~~l~~~L~~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~ 134 (769)
.++|.+.|.. ..+.||..+|.-|.||||-|..+++.+.. ..+. +.-|.+. ..+...+-++.++++.+
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk--~~~k-vllVaaD~~RpAA~eQL~~La~q~~ 155 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK--KGKK-VLLVAADTYRPAAIEQLKQLAEQVG 155 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH--cCCc-eEEEecccCChHHHHHHHHHHHHcC
Confidence 4556666642 24678999999999999999999999832 3333 3333332 33456677788888887
Q ss_pred CCCccc-ccccHHHHHHHHHHHHc
Q 046742 135 LYDQSW-KNKRLEIKAADIFKILS 157 (769)
Q Consensus 135 ~~~~~~-~~~~~~~~~~~l~~~l~ 157 (769)
.+.-.. ...++.+.+..-.+..+
T Consensus 156 v~~f~~~~~~~Pv~Iak~al~~ak 179 (451)
T COG0541 156 VPFFGSGTEKDPVEIAKAALEKAK 179 (451)
T ss_pred CceecCCCCCCHHHHHHHHHHHHH
Confidence 654221 23344444444333333
No 357
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.75 E-value=0.026 Score=57.06 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+.|.|+|.+|+||||+|+++...+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468899999999999999999987
No 358
>PRK05922 type III secretion system ATPase; Validated
Probab=95.75 E-value=0.028 Score=60.29 Aligned_cols=91 Identities=15% Similarity=0.169 Sum_probs=50.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcc----cccccH------
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQS----WKNKRL------ 145 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~------ 145 (769)
.-..++|.|..|+|||||++.++... .....++-............+.+........... ....+.
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 34578999999999999999999775 2222232222233334455665555443321100 011111
Q ss_pred HHHHHHHHHHH--ccCCEEEEEecccC
Q 046742 146 EIKAADIFKIL--SRKKFVLLLDDIWN 170 (769)
Q Consensus 146 ~~~~~~l~~~l--~~k~~LlVlDdv~~ 170 (769)
...+-.+-+++ +++++|+++||+-.
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 11122233444 47899999999854
No 359
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.75 E-value=0.031 Score=52.65 Aligned_cols=120 Identities=17% Similarity=0.181 Sum_probs=62.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcE--EEEEEeCccccHHHHHHHHH--HH--hCCCCccccccc-----
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDF--VIWVVLSRDLQIDRLQENIA--RK--IGLYDQSWKNKR----- 144 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~i~--~~--l~~~~~~~~~~~----- 144 (769)
....|.|+|..|-||||.|..++-+.. ...+.+ +=|+.......-...+..+- .. .+... .+...+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~--g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~-~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV--GHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGF-TWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH--HCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCC-cccCCCcHHHH
Confidence 346889999999999999999988863 223322 22333222223334443321 00 01100 011111
Q ss_pred --HHHHHHHHHHHHccCCE-EEEEecccCc-----ccccccCCCCCCCCCCcEEEEeeccCC
Q 046742 145 --LEIKAADIFKILSRKKF-VLLLDDIWNR-----VDLEKLGIPPMNTNGSSKIVFTTRSAG 198 (769)
Q Consensus 145 --~~~~~~~l~~~l~~k~~-LlVlDdv~~~-----~~~~~~~~~~~~~~~~~~iivTtR~~~ 198 (769)
..+..+..++.+...+| ++|||++-.. -+.+++...+.....+..||+|-|+..
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 22233334455555555 9999997432 122222222334455678999999763
No 360
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.75 E-value=0.024 Score=59.99 Aligned_cols=78 Identities=13% Similarity=0.110 Sum_probs=50.5
Q ss_pred CCCCCchHHHHHHHHHhcc--------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeC-ccc
Q 046742 56 PQTLGLESTFDEVWRCLGE--------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLS-RDL 120 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~--------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~ 120 (769)
..++|.++.+..+..++.. -..+.|.++|++|+|||++|+.++.......-.++...|...+ ...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 5678999999998877732 0146789999999999999999999872111122222233221 223
Q ss_pred cHHHHHHHHHHHh
Q 046742 121 QIDRLQENIARKI 133 (769)
Q Consensus 121 ~~~~~~~~i~~~l 133 (769)
+.+.+++.+.+..
T Consensus 95 d~e~~ir~L~~~A 107 (443)
T PRK05201 95 DVESIIRDLVEIA 107 (443)
T ss_pred CHHHHHHHHHHHH
Confidence 5666666666544
No 361
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.72 E-value=0.055 Score=55.10 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+.+|+|.|+.|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999998887665
No 362
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.71 E-value=0.022 Score=51.56 Aligned_cols=42 Identities=29% Similarity=0.238 Sum_probs=31.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHH
Q 046742 80 IGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQE 127 (769)
Q Consensus 80 v~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 127 (769)
|.|+|++|+|||+||+.+++.. .. ...-+.++...+..+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hc---ceEEEEecccccccccee
Confidence 6799999999999999999987 22 234457777767776654
No 363
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.70 E-value=0.019 Score=54.17 Aligned_cols=49 Identities=24% Similarity=0.389 Sum_probs=35.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIAR 131 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 131 (769)
..+|+|-||-|+||||||+.+++++ . |. .+.-.+...+-++.++.++-+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l-~----~~-~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL-G----FK-VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh-C----Cc-eeeecccCChHHHHHHHhHHH
Confidence 4689999999999999999999998 2 32 233334455556666666555
No 364
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.69 E-value=0.046 Score=58.74 Aligned_cols=89 Identities=20% Similarity=0.218 Sum_probs=50.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhC-----CCCccccccc-----HH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIG-----LYDQSWKNKR-----LE 146 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-----~~~~~~~~~~-----~~ 146 (769)
-..++|+|+.|+|||||++.++... .....+++....+..++.++......... .-... .... ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qs-d~~~~~r~~~~ 239 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATS-DESPMMRRLAP 239 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcC-CCCHHHHHHHH
Confidence 3578999999999999999888664 22335566654444455555444433321 10000 1101 11
Q ss_pred HHHHHHHHHH--ccCCEEEEEecccC
Q 046742 147 IKAADIFKIL--SRKKFVLLLDDIWN 170 (769)
Q Consensus 147 ~~~~~l~~~l--~~k~~LlVlDdv~~ 170 (769)
...-.+-+++ +++.+|+++||+-.
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchHH
Confidence 1111223333 47899999999854
No 365
>PRK06762 hypothetical protein; Provisional
Probab=95.69 E-value=0.0096 Score=55.83 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|.|+|++|+||||+|+.++..+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999886
No 366
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.68 E-value=0.036 Score=57.65 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 046742 80 IGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 80 v~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+++.|++|+||||+++.+.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999887
No 367
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.67 E-value=0.026 Score=55.11 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+|+|+|++|+||||||+.++...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999999876
No 368
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.67 E-value=0.02 Score=50.64 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 63 STFDEVWRCLGE--EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 63 ~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
++..++-+.|.. ....+|++.|.-|+||||+++.++..+
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 445555555533 334689999999999999999999987
No 369
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.66 E-value=0.01 Score=58.12 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+..+|+|.|++|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999987
No 370
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.66 E-value=0.11 Score=54.12 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+++++|++|+||||++..++..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999999987
No 371
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.65 E-value=0.053 Score=52.66 Aligned_cols=86 Identities=22% Similarity=0.331 Sum_probs=54.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCCc----ccccccH-------
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYDQ----SWKNKRL------- 145 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~------- 145 (769)
..++|.|.+|+|||+|+.++++.. . -+.++++.++.. ....++.+++...-..... .....+.
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~-~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----D-ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----T-TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----c-ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 578899999999999999999986 1 234577777754 4677777777543111110 0011111
Q ss_pred ---HHHHHHHHHHHccCCEEEEEecccC
Q 046742 146 ---EIKAADIFKILSRKKFVLLLDDIWN 170 (769)
Q Consensus 146 ---~~~~~~l~~~l~~k~~LlVlDdv~~ 170 (769)
-..++.+++ +++.+|+|+||+..
T Consensus 91 ~~a~t~AEyfrd--~G~dVlli~Dsltr 116 (215)
T PF00006_consen 91 YTALTIAEYFRD--QGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHH--TTSEEEEEEETHHH
T ss_pred ccchhhhHHHhh--cCCceeehhhhhHH
Confidence 122233333 68999999999843
No 372
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.64 E-value=0.026 Score=60.49 Aligned_cols=91 Identities=23% Similarity=0.282 Sum_probs=52.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCc----ccccc-cHHH---
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQ----SWKNK-RLEI--- 147 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~-~~~~--- 147 (769)
.-..++|.|..|+|||||++.++... .....++.....+.....++..+.+..-++... ..... ....
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~----~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT----DADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC----CCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 33578999999999999999888765 222334444444445566666655444322110 00111 1111
Q ss_pred --HHHHHHHHH--ccCCEEEEEecccC
Q 046742 148 --KAADIFKIL--SRKKFVLLLDDIWN 170 (769)
Q Consensus 148 --~~~~l~~~l--~~k~~LlVlDdv~~ 170 (769)
.+-.+-+++ +++.+|+++||+-.
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 112233444 47899999999854
No 373
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.64 E-value=0.04 Score=52.78 Aligned_cols=44 Identities=25% Similarity=0.129 Sum_probs=30.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHH
Q 046742 80 IGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQEN 128 (769)
Q Consensus 80 v~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 128 (769)
+.|.|++|+|||++|.+++.... ..=..++|++... +.+++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCC--CHHHHHHH
Confidence 67999999999999999988762 1223477886544 34444444
No 374
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.62 E-value=0.091 Score=65.02 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=24.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++-|.++|++|+|||.||+++|.+.
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc
Confidence 456688999999999999999999987
No 375
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.61 E-value=0.042 Score=60.13 Aligned_cols=95 Identities=23% Similarity=0.306 Sum_probs=53.4
Q ss_pred HHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcc---c
Q 046742 66 DEVWRCLGE--EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQS---W 140 (769)
Q Consensus 66 ~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~ 140 (769)
.++-+.|.. ..-.++.|.|.+|+|||||+.+++.... ..-..++|++... +..++... ++.++...+. .
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~ 140 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLL 140 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEe
Confidence 344455543 2345889999999999999999998872 1223578887544 33333322 4555542211 1
Q ss_pred ccccHHHHHHHHHHHHccCCEEEEEeccc
Q 046742 141 KNKRLEIKAADIFKILSRKKFVLLLDDIW 169 (769)
Q Consensus 141 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 169 (769)
...+.+++.+.+.+ .+.-++|+|.+.
T Consensus 141 ~e~~l~~i~~~i~~---~~~~lVVIDSIq 166 (446)
T PRK11823 141 AETNLEAILATIEE---EKPDLVVIDSIQ 166 (446)
T ss_pred CCCCHHHHHHHHHh---hCCCEEEEechh
Confidence 12233333333321 245578888764
No 376
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.60 E-value=0.03 Score=61.03 Aligned_cols=91 Identities=21% Similarity=0.185 Sum_probs=47.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEE-EEEeCcc-ccHHHHHHHHHHHhCC-CCc--ccccccHHHHHHHH
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVI-WVVLSRD-LQIDRLQENIARKIGL-YDQ--SWKNKRLEIKAADI 152 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~-wv~~~~~-~~~~~~~~~i~~~l~~-~~~--~~~~~~~~~~~~~l 152 (769)
....|+|++|+|||||++.+++... ..+-++.+ .+-+... ..+.++.+.+--.+-. ..+ ...........-.+
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999763 12233333 3334433 2344443332100000 000 00111112222223
Q ss_pred HHHH--ccCCEEEEEecccC
Q 046742 153 FKIL--SRKKFVLLLDDIWN 170 (769)
Q Consensus 153 ~~~l--~~k~~LlVlDdv~~ 170 (769)
-+++ .++.+||++|++-.
T Consensus 495 Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHcCCCEEEEEeCchH
Confidence 3444 57899999999853
No 377
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.60 E-value=0.076 Score=52.58 Aligned_cols=49 Identities=24% Similarity=0.305 Sum_probs=33.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENI 129 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 129 (769)
...++.|.|+.|+||||+|.+++.... +.. ..+++++. ..+..++.+++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~~--e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL--QNG-YSVSYVST--QLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEeC--CCCHHHHHHHH
Confidence 345899999999999999988776551 122 34566663 33456666665
No 378
>PRK14527 adenylate kinase; Provisional
Probab=95.60 E-value=0.017 Score=55.63 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+|.|+|++|+||||+|+.++..+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999886
No 379
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.58 E-value=0.053 Score=54.81 Aligned_cols=40 Identities=15% Similarity=0.330 Sum_probs=29.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR 118 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 118 (769)
.-.++.|.|++|+|||++|.+++.... ..-..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 456889999999999999999877652 1223577787754
No 380
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.58 E-value=0.011 Score=54.94 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+.|.+.|++|+||||+|++++..+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 467789999999999999999987
No 381
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.57 E-value=0.034 Score=59.84 Aligned_cols=46 Identities=20% Similarity=0.130 Sum_probs=35.8
Q ss_pred CCCCCchHHHHHHHHHhcc-------C---------CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGE-------E---------HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~-------~---------~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+||.+..++.+...+.. . ..+.+.++|++|+|||++|+.++...
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4568999999988655411 0 13568899999999999999999876
No 382
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.56 E-value=0.037 Score=52.55 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-.+++|.|+.|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34589999999999999999999876
No 383
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.55 E-value=0.02 Score=54.58 Aligned_cols=38 Identities=32% Similarity=0.382 Sum_probs=31.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeC
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLS 117 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 117 (769)
.++++|+|++|+|||||+..+..+. ...|..+++.+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeeccc
Confidence 4789999999999999999999998 5778666665533
No 384
>PTZ00301 uridine kinase; Provisional
Probab=95.53 E-value=0.011 Score=57.28 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|+|.|++|+||||+|+.+...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 3689999999999999999998776
No 385
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.52 E-value=0.017 Score=52.03 Aligned_cols=39 Identities=21% Similarity=0.402 Sum_probs=29.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR 118 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 118 (769)
++|.|+|+.|+|||||++.+.+.+. +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4899999999999999999999983 34566666666655
No 386
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.51 E-value=0.0092 Score=51.16 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 046742 80 IGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 80 v~I~G~gGiGKTtLa~~~~~~~ 101 (769)
|.|+|++|+|||++|..++.++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988877
No 387
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.51 E-value=0.02 Score=50.46 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=44.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILS 157 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 157 (769)
+-|.|.|-+|+||||+|.+++... ..-|+++++-..-..++..-=+.... ..-|.+.+++.+-..+.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~--------~~~~i~isd~vkEn~l~~gyDE~y~c-----~i~DEdkv~D~Le~~m~ 74 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT--------GLEYIEISDLVKENNLYEGYDEEYKC-----HILDEDKVLDELEPLMI 74 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh--------CCceEehhhHHhhhcchhcccccccC-----ccccHHHHHHHHHHHHh
Confidence 457899999999999999999664 13577777654444444332222221 33456666666666665
Q ss_pred cCC
Q 046742 158 RKK 160 (769)
Q Consensus 158 ~k~ 160 (769)
+..
T Consensus 75 ~Gg 77 (176)
T KOG3347|consen 75 EGG 77 (176)
T ss_pred cCC
Confidence 543
No 388
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.51 E-value=0.068 Score=52.12 Aligned_cols=61 Identities=20% Similarity=0.240 Sum_probs=39.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEE---------eCccccHHH--HHHHHHHHhCCCCcc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVV---------LSRDLQIDR--LQENIARKIGLYDQS 139 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~---------~~~~~~~~~--~~~~i~~~l~~~~~~ 139 (769)
++..|.++||+|.||||..+.++.... ..+....-|+ .....++.+ -+++..++.++++.+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~---~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLH---AKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHh---hccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 455788999999999999999998872 2232222222 223334443 357788888776643
No 389
>PRK03839 putative kinase; Provisional
Probab=95.49 E-value=0.011 Score=56.20 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.|.|.|++|+||||+|+.+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999997
No 390
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.49 E-value=0.022 Score=59.50 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=40.4
Q ss_pred CCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+||.++.+..+.-.+.+++...|.|.|..|+||||+++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 6679999999998888877777788899999999999999998665
No 391
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.47 E-value=0.063 Score=52.72 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+|+|.|++|+||||+|+.+...+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 392
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.46 E-value=0.042 Score=63.16 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=61.7
Q ss_pred HHHHHhc-c--CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcc---c
Q 046742 67 EVWRCLG-E--EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQS---W 140 (769)
Q Consensus 67 ~l~~~L~-~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~ 140 (769)
.|-.+|. . ..-+++-|+|++|+||||||.+++.... ..-..++|++....++. ..++++++..+. .
T Consensus 47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~ 118 (790)
T PRK09519 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVS 118 (790)
T ss_pred HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEe
Confidence 3444554 2 2456888999999999999999776652 22245789987776663 367777764321 1
Q ss_pred ccccHHHHHHHHHHHHcc-CCEEEEEeccc
Q 046742 141 KNKRLEIKAADIFKILSR-KKFVLLLDDIW 169 (769)
Q Consensus 141 ~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 169 (769)
.....++....+.+.++. +--++|+|-+.
T Consensus 119 ~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 119 QPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred cCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 333445555556665544 55689999975
No 393
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.44 E-value=0.045 Score=52.97 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
....+|+|+|++|+||||+|+.+...+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999976
No 394
>PRK06217 hypothetical protein; Validated
Probab=95.43 E-value=0.025 Score=54.01 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.|+|.|.+|+||||+|++++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999987
No 395
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.42 E-value=0.042 Score=58.98 Aligned_cols=90 Identities=16% Similarity=0.246 Sum_probs=51.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCCc----cccccc-HH---
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYDQ----SWKNKR-LE--- 146 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~~~~~~-~~--- 146 (769)
.-..++|+|..|+|||||+++++... .. +.++++-++.. ....++..+.+..-++... .....+ ..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~----~~-d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA----DA-DVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc----CC-CEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 44578999999999999999999775 22 34455555443 3455565555443222110 001111 11
Q ss_pred --HHHHHHHHHH--ccCCEEEEEecccC
Q 046742 147 --IKAADIFKIL--SRKKFVLLLDDIWN 170 (769)
Q Consensus 147 --~~~~~l~~~l--~~k~~LlVlDdv~~ 170 (769)
...-.+-+++ +++.+|+++||+-.
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 1112233344 47899999999854
No 396
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.42 E-value=0.0058 Score=35.21 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=7.3
Q ss_pred CCEEeccCCCCcccchh
Q 046742 464 LQHLNLSLTNIKELPEE 480 (769)
Q Consensus 464 L~~L~l~~~~l~~lp~~ 480 (769)
|++|++++|+++.+|.+
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444443
No 397
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.42 E-value=0.077 Score=56.93 Aligned_cols=61 Identities=20% Similarity=0.203 Sum_probs=36.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCC
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYD 137 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~ 137 (769)
...+++++|+.|+||||++..++... ........+..+..... ....+-+...++.++++.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 34689999999999999999988764 11122233444443332 233334555566666543
No 398
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.40 E-value=0.059 Score=59.03 Aligned_cols=51 Identities=27% Similarity=0.321 Sum_probs=35.3
Q ss_pred HHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc
Q 046742 65 FDEVWRCLGE--EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR 118 (769)
Q Consensus 65 ~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 118 (769)
+.++-+.|.. ..-.++.|.|.+|+|||||+.+++..... . -..++|++...
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~-~--g~kvlYvs~EE 132 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAK-N--QMKVLYVSGEE 132 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHh-c--CCcEEEEECcC
Confidence 4455555543 23468899999999999999999887621 1 13577886543
No 399
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.40 E-value=0.04 Score=54.28 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=65.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCC----------C---cEEEEEEeCcc----c--cH----------------
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNG----------F---DFVIWVVLSRD----L--QI---------------- 122 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~----------f---~~~~wv~~~~~----~--~~---------------- 122 (769)
..++|+||-|.|||||.+.+..-.....+. . ..+.||.-... + +.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 689999999999999999998844111110 1 23555531110 0 11
Q ss_pred ------HHHHHHHHHHhCCCC---ccccccc-HHHHHHHHHHHHccCCEEEEEecccC------cccccccCCCCCCCCC
Q 046742 123 ------DRLQENIARKIGLYD---QSWKNKR-LEIKAADIFKILSRKKFVLLLDDIWN------RVDLEKLGIPPMNTNG 186 (769)
Q Consensus 123 ------~~~~~~i~~~l~~~~---~~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~------~~~~~~~~~~~~~~~~ 186 (769)
.+...+.++.+++.. .....-+ -+...-.+-+.|..++=|++||+--. ...+-++...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 234445555555432 1111222 23333345566778888999997422 22233332223322
Q ss_pred CcEEEEeeccCCc
Q 046742 187 SSKIVFTTRSAGG 199 (769)
Q Consensus 187 ~~~iivTtR~~~v 199 (769)
|.-|+++|-+-..
T Consensus 189 g~tIl~vtHDL~~ 201 (254)
T COG1121 189 GKTVLMVTHDLGL 201 (254)
T ss_pred CCEEEEEeCCcHH
Confidence 7789988887654
No 400
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.39 E-value=0.084 Score=58.73 Aligned_cols=99 Identities=17% Similarity=0.086 Sum_probs=57.8
Q ss_pred HHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcc---
Q 046742 65 FDEVWRCLGE--EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQS--- 139 (769)
Q Consensus 65 ~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--- 139 (769)
+..+-+.|.. ..-.++.|.|++|+|||||+.+++.... ..-..++++.... +..++.+.+ +.++.....
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~ 322 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQ 322 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhh
Confidence 3445555543 3456899999999999999999998762 2224466665433 455666553 455542210
Q ss_pred ----------cccccHHHHHHHHHHHHcc-CCEEEEEeccc
Q 046742 140 ----------WKNKRLEIKAADIFKILSR-KKFVLLLDDIW 169 (769)
Q Consensus 140 ----------~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 169 (769)
......+..+..+.+.+.. +.-.+|+|.+.
T Consensus 323 ~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 323 QGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred CCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 0112235555555555543 34466777653
No 401
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.38 E-value=0.028 Score=55.81 Aligned_cols=89 Identities=19% Similarity=0.155 Sum_probs=54.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCC-CcEEEEEEeCccccHHHHHHHHHHHhCCCCc-------------ccc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNG-FDFVIWVVLSRDLQIDRLQENIARKIGLYDQ-------------SWK 141 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------~~~ 141 (769)
...++.|.|++|+|||++|.+++.... .. =..++|++.... .+++.+.+. .++.... ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~---~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL---KNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh---hhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 456899999999999999999776541 11 235788876554 344444433 3332110 001
Q ss_pred -----cccHHHHHHHHHHHHcc-CCEEEEEecccC
Q 046742 142 -----NKRLEIKAADIFKILSR-KKFVLLLDDIWN 170 (769)
Q Consensus 142 -----~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~ 170 (769)
..+.+.....+.+.++. +...+|+|.+..
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~ 126 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSA 126 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECHHH
Confidence 34667777777777665 557999998743
No 402
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.36 E-value=0.093 Score=57.26 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=37.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCC
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLY 136 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~ 136 (769)
..|++++|+.|+||||.+.+++..+. .+.....+..+..... ....+-++..++.+++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~-~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV-MRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH-HhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 46999999999999999999998762 1222223555554432 23344455556666554
No 403
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.33 E-value=0.075 Score=49.74 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-.+++|+|+.|.|||||++.++...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999876
No 404
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.31 E-value=0.012 Score=51.13 Aligned_cols=28 Identities=32% Similarity=0.374 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhccCCCCCCcE
Q 046742 80 IGLYGMGEVGKTTLLTRINNKFSNTPNGFDF 110 (769)
Q Consensus 80 v~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~ 110 (769)
|.|.|.+|+||||+|+.++... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 6799999999999999999998 566654
No 405
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.30 E-value=0.016 Score=54.81 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...|.|+|++|+||||+|+.++..+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999987
No 406
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.30 E-value=0.09 Score=60.32 Aligned_cols=88 Identities=19% Similarity=0.202 Sum_probs=51.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKI 155 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 155 (769)
.++++++|+.|+||||.+.+++..+. .......+..+..... ....+-++...+.++++.. ...+.+++.+.+. .
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~-~ 260 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV-AREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALA-A 260 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH-HHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHH-H
Confidence 46999999999999999999987762 1222234556654432 2344555666666665442 2234444433333 3
Q ss_pred HccCCEEEEEeccc
Q 046742 156 LSRKKFVLLLDDIW 169 (769)
Q Consensus 156 l~~k~~LlVlDdv~ 169 (769)
+.++. ++++|-.-
T Consensus 261 ~~~~D-~VLIDTAG 273 (767)
T PRK14723 261 LGDKH-LVLIDTVG 273 (767)
T ss_pred hcCCC-EEEEeCCC
Confidence 44443 66667654
No 407
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.29 E-value=0.015 Score=55.73 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999876
No 408
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.26 E-value=0.022 Score=59.30 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=39.0
Q ss_pred CCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++|.++.++.+.-.+.+.+.+-+.+.|..|+||||+|+.++.-+
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 5679999999988766655666678899999999999999998776
No 409
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.26 E-value=0.094 Score=52.49 Aligned_cols=95 Identities=13% Similarity=0.101 Sum_probs=58.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccC-CCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCCc-----ccccccHHHH-
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSN-TPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYDQ-----SWKNKRLEIK- 148 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~-~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~- 148 (769)
-..++|.|-.|+|||+|+.++++.... .++.-+.++++-+++. ....++..++.+.-.+... ..........
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 347899999999999999999887610 1233467888887765 4567777777664322110 0011111111
Q ss_pred ----HHHHHHHHc---cCCEEEEEecccCc
Q 046742 149 ----AADIFKILS---RKKFVLLLDDIWNR 171 (769)
Q Consensus 149 ----~~~l~~~l~---~k~~LlVlDdv~~~ 171 (769)
.-.+-++++ ++++|+++||+-..
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 122334442 68999999998543
No 410
>PRK05973 replicative DNA helicase; Provisional
Probab=95.26 E-value=0.12 Score=51.01 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=33.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENI 129 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 129 (769)
.-.++.|.|.+|+|||++|.+++.... .. -..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~-Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--KS-GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--hc-CCeEEEEEEeCC--HHHHHHHH
Confidence 345889999999999999999987762 22 234666655443 44444443
No 411
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.25 E-value=0.1 Score=48.66 Aligned_cols=79 Identities=20% Similarity=0.315 Sum_probs=45.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHcc-
Q 046742 80 IGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSR- 158 (769)
Q Consensus 80 v~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~- 158 (769)
+.|.|.+|+|||++|.+++... . ..++++.-....+.+ +.+.|.+........+... +....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~---~---~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~---E~~~~l~~~l~~~ 71 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL---G---GPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTI---ETPRDLVSALKEL 71 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc---C---CCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEe---ecHHHHHHHHHhc
Confidence 5799999999999999998763 1 245666655555443 4555444433323223222 222233333321
Q ss_pred -CCEEEEEecc
Q 046742 159 -KKFVLLLDDI 168 (769)
Q Consensus 159 -k~~LlVlDdv 168 (769)
+.-.+++|.+
T Consensus 72 ~~~~~VLIDcl 82 (169)
T cd00544 72 DPGDVVLIDCL 82 (169)
T ss_pred CCCCEEEEEcH
Confidence 2337999986
No 412
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.25 E-value=0.031 Score=54.76 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=35.0
Q ss_pred HHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 64 TFDEVWRCLGE--EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 64 ~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
+-.++++.+.. .+..+|+|+|++|+|||||.-.+...+. .+++--.++=|+-+..++--
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~-~~g~~VaVlAVDPSSp~tGG 74 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR-ERGKRVAVLAVDPSSPFTGG 74 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH-HTT--EEEEEE-GGGGCC--
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh-hcCCceEEEEECCCCCCCCC
Confidence 33445554432 4678999999999999999999998883 23333345555544444433
No 413
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.23 E-value=0.022 Score=53.12 Aligned_cols=113 Identities=17% Similarity=0.124 Sum_probs=57.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc--cHHHHHHHHHHHhCCCCcccccccHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL--QIDRLQENIARKIGLYDQSWKNKRLEIKAADIF 153 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 153 (769)
.-.+++|.|+.|.|||||.+.++... ....+.+++....-. +..+. ..+.++... +-..-+...-.+-
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~---qLS~G~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAMVY---QLSVGERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEEEE---ecCHHHHHHHHHH
Confidence 33589999999999999999999876 223444555322111 11111 111111110 1112222333344
Q ss_pred HHHccCCEEEEEecccCccc---ccccCCCCCC-CCCCcEEEEeeccCC
Q 046742 154 KILSRKKFVLLLDDIWNRVD---LEKLGIPPMN-TNGSSKIVFTTRSAG 198 (769)
Q Consensus 154 ~~l~~k~~LlVlDdv~~~~~---~~~~~~~~~~-~~~~~~iivTtR~~~ 198 (769)
+.+-.++-++++|+.-..-| ...+...+.. ..++..||++|.+.+
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 55556778899998754322 1111111111 123556788887754
No 414
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.23 E-value=0.028 Score=53.77 Aligned_cols=50 Identities=26% Similarity=0.468 Sum_probs=34.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCC
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYD 137 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 137 (769)
.|+|+|-||+||||+|..++.++ ..++.|. +.-|+...++++ .+++++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l-~~~~~~~-VLvVDaDpd~nL-------~~~LGve~ 51 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL-LSKGGYN-VLVVDADPDSNL-------PEALGVEE 51 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH-HhcCCce-EEEEeCCCCCCh-------HHhcCCCC
Confidence 68999999999999999977776 2233343 555666655554 35666654
No 415
>PF13245 AAA_19: Part of AAA domain
Probab=95.22 E-value=0.041 Score=43.56 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=19.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+.+++.|.|++|.|||+++.+.....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999996665555444
No 416
>PRK00625 shikimate kinase; Provisional
Probab=95.21 E-value=0.015 Score=54.50 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.|.|+|++|+||||+++.+++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 417
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.19 E-value=0.072 Score=49.86 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=46.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCccccccc-HHHHHHHHHHHHc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKR-LEIKAADIFKILS 157 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~l~~~l~ 157 (769)
++.|.|.+|+||||+|..++.+. . . .++++.... ..-+++.+.|..+....+..|.... ...+...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~-~--~---~~~~iat~~-~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS-G--L---QVLYIATAQ-PFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc-C--C---CcEeCcCCC-CChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 68899999999999999999875 1 1 133443333 3344566666665443333332211 1223333333233
Q ss_pred cCCEEEEEeccc
Q 046742 158 RKKFVLLLDDIW 169 (769)
Q Consensus 158 ~k~~LlVlDdv~ 169 (769)
+ .-++++|.+.
T Consensus 76 ~-~~~VlID~Lt 86 (170)
T PRK05800 76 P-GRCVLVDCLT 86 (170)
T ss_pred C-CCEEEehhHH
Confidence 2 3378889863
No 418
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.18 E-value=0.027 Score=51.60 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=30.1
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 63 STFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 63 ~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+.+++|.+++.+ ++++++|.+|+|||||+..+..+.
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 446677777764 699999999999999999999875
No 419
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.14 E-value=0.21 Score=53.80 Aligned_cols=49 Identities=22% Similarity=0.413 Sum_probs=37.3
Q ss_pred chHHHHHHHHHhc-----cC--CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEE
Q 046742 61 LESTFDEVWRCLG-----EE--HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWV 114 (769)
Q Consensus 61 r~~~~~~l~~~L~-----~~--~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv 114 (769)
....++++..||. .+ +.+++.|+|++|+||||.++.++..+ .+..+=|.
T Consensus 87 HkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-----g~~~~Ew~ 142 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-----GYQLIEWS 142 (634)
T ss_pred hHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-----Cceeeeec
Confidence 3455777888886 33 45699999999999999999999876 24455665
No 420
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.07 E-value=0.027 Score=58.86 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=41.4
Q ss_pred CCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+||.++.+..|...+.+++.+-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 6679999999999998888888888899999999999999997765
No 421
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.06 E-value=0.086 Score=53.36 Aligned_cols=104 Identities=25% Similarity=0.236 Sum_probs=59.2
Q ss_pred CCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCc
Q 046742 59 LGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQ 138 (769)
Q Consensus 59 vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 138 (769)
.|...+..+....+.....+.|.|.|+.|.||||++..+..... ..-..++.+....+.....+ .+....
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iitiEdp~E~~~~~~-----~q~~v~-- 131 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITVEDPVEYQIPGI-----NQVQVN-- 131 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEECCCceecCCCc-----eEEEeC--
Confidence 45544444433433344556899999999999999999887762 22223444433322221110 011111
Q ss_pred ccccccHHHHHHHHHHHHccCCEEEEEecccCccccc
Q 046742 139 SWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVDLE 175 (769)
Q Consensus 139 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~ 175 (769)
........+.++..++..+=.++++++.+.+...
T Consensus 132 ---~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 132 ---EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred ---CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 1111234566677788888899999998775433
No 422
>PRK15453 phosphoribulokinase; Provisional
Probab=95.06 E-value=0.11 Score=52.19 Aligned_cols=80 Identities=15% Similarity=-0.004 Sum_probs=45.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc--cHHHHHHHHH--HHhCCCCcc--cccccHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL--QIDRLQENIA--RKIGLYDQS--WKNKRLEIKA 149 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~--~~l~~~~~~--~~~~~~~~~~ 149 (769)
...+|+|.|.+|+||||+|+.+++.+. ..-.....++..... +..++-..+. +.-+..-+. ....+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~---~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR---RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh---hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 457999999999999999999998762 111123444433221 3333322222 122211111 3556677777
Q ss_pred HHHHHHHcc
Q 046742 150 ADIFKILSR 158 (769)
Q Consensus 150 ~~l~~~l~~ 158 (769)
+.+++..++
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 777776554
No 423
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.05 E-value=0.063 Score=48.18 Aligned_cols=53 Identities=11% Similarity=-0.076 Sum_probs=33.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHh
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKI 133 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 133 (769)
.+.|.|+.|+|||+.+..++.+. ...+....++|+.-. ..-..+....+....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~-~~~~~~~~~lv~~p~-~~l~~~~~~~~~~~~ 54 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL-LDSLKGGQVLVLAPT-RELANQVAERLKELF 54 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH-HhcccCCCEEEEcCc-HHHHHHHHHHHHHHh
Confidence 46799999999999999988876 222344566666433 323334444444443
No 424
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.05 E-value=0.027 Score=55.13 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 046742 80 IGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 80 v~I~G~gGiGKTtLa~~~~~~~ 101 (769)
|.|.|++|+||||+|+.++..+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999999876
No 425
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.05 E-value=0.028 Score=54.19 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-.+++|+|.+|+|||||++.++.-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 34589999999999999999998654
No 426
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.04 E-value=0.046 Score=51.50 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44689999999999999999999876
No 427
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.02 E-value=0.063 Score=54.12 Aligned_cols=22 Identities=36% Similarity=0.526 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 046742 80 IGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 80 v~I~G~gGiGKTtLa~~~~~~~ 101 (769)
|.++|++|+||||+|++++..+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999887
No 428
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.00 E-value=0.16 Score=52.10 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=37.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc-cccHHHHHHHHHHHhCCC
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR-DLQIDRLQENIARKIGLY 136 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 136 (769)
.++.||.++|.-|.||||....+++.++ +..|. +.-|+... ....-+-+.+-+.+.+++
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~k--kkG~K-~~LvcaDTFRagAfDQLkqnA~k~~iP 158 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYK--KKGYK-VALVCADTFRAGAFDQLKQNATKARVP 158 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHH--hcCCc-eeEEeecccccchHHHHHHHhHhhCCe
Confidence 4678999999999999999999888873 34443 23344332 123344444445555444
No 429
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.00 E-value=0.055 Score=57.05 Aligned_cols=67 Identities=22% Similarity=0.177 Sum_probs=49.3
Q ss_pred CCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIA 130 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 130 (769)
..++|+++.+..+...+..+ +.+.+.|++|+|||+||+.++... ... .++|.+.......+++....
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l---~~~---~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL---GLP---FVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh---CCC---eEEEecCCCCCHHHhcCchh
Confidence 44789998888887777644 467799999999999999999998 223 35666666666665554433
No 430
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.99 E-value=0.021 Score=54.34 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+++|+|++|+||||+++.++...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 431
>PRK05439 pantothenate kinase; Provisional
Probab=94.99 E-value=0.17 Score=52.02 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
....+|+|.|.+|+||||+|+.+...+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356689999999999999999998876
No 432
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.98 E-value=0.066 Score=57.70 Aligned_cols=90 Identities=20% Similarity=0.275 Sum_probs=51.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc-cccHHHHHHHHHHHhCCCCc-----ccccccHHH--
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR-DLQIDRLQENIARKIGLYDQ-----SWKNKRLEI-- 147 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~-- 147 (769)
.-..++|+|..|+|||||++.++... . .+.++...+.. .....++...+...-.+... ..+......
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~----~-~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT----E-ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----C-CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 34578999999999999999988754 2 23444433433 33455666665554332210 001111111
Q ss_pred ---HHHHHHHHH--ccCCEEEEEecccC
Q 046742 148 ---KAADIFKIL--SRKKFVLLLDDIWN 170 (769)
Q Consensus 148 ---~~~~l~~~l--~~k~~LlVlDdv~~ 170 (769)
....+-+++ +++++|+++||+-.
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 112233333 47899999999854
No 433
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.96 E-value=0.038 Score=54.93 Aligned_cols=63 Identities=21% Similarity=0.239 Sum_probs=43.2
Q ss_pred HHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHH
Q 046742 67 EVWRCLG--EEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIA 130 (769)
Q Consensus 67 ~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 130 (769)
+++..+. ..+..+|+|+|.+|+|||||.-.+...+ ..+++--.++=|+-+..++--.++.+=.
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGDRi 103 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILGDRI 103 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccccccHh
Confidence 3444442 3567799999999999999999999888 4445545566666666655555544433
No 434
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.96 E-value=0.035 Score=58.62 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=45.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHH
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFK 154 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 154 (769)
..++-+.|+|..|.|||-|.-.+|+.. .++. ..++..+ .-+.++.+.+-+.-+ .... +..+.+
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~l-p~~~--k~R~HFh----~Fm~~vh~~l~~~~~------~~~~----l~~va~ 122 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSL-PIKR--KRRVHFH----EFMLDVHSRLHQLRG------QDDP----LPQVAD 122 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhC-Cccc--ccccccc----HHHHHHHHHHHHHhC------CCcc----HHHHHH
Confidence 356789999999999999999999988 3211 1111100 123333333333221 1122 233445
Q ss_pred HHccCCEEEEEeccc
Q 046742 155 ILSRKKFVLLLDDIW 169 (769)
Q Consensus 155 ~l~~k~~LlVlDdv~ 169 (769)
.+.++..||.||++.
T Consensus 123 ~l~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQ 137 (362)
T ss_pred HHHhcCCEEEEeeee
Confidence 556677799999864
No 435
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.95 E-value=0.13 Score=53.30 Aligned_cols=90 Identities=22% Similarity=0.307 Sum_probs=50.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeC-ccccHHHHHHHHHHHhCCCCc----cccccc-HH---
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLS-RDLQIDRLQENIARKIGLYDQ----SWKNKR-LE--- 146 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~----~~~~~~-~~--- 146 (769)
.-..++|+|..|+|||||++.++... . . +..+..-++ +......+.......-++... .....+ ..
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~-~---~-~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT-T---A-DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC-C---C-CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 34578999999999999999988875 1 1 223333333 344566666665554322110 001111 11
Q ss_pred --HHHHHHHHHH--ccCCEEEEEecccC
Q 046742 147 --IKAADIFKIL--SRKKFVLLLDDIWN 170 (769)
Q Consensus 147 --~~~~~l~~~l--~~k~~LlVlDdv~~ 170 (769)
...-.+-+++ +++.+|+++||+-.
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 1111122333 47899999999754
No 436
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.94 E-value=0.024 Score=51.04 Aligned_cols=22 Identities=50% Similarity=0.690 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 046742 80 IGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 80 v~I~G~gGiGKTtLa~~~~~~~ 101 (769)
|+|+|+.|+|||||++.++...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 6899999999999999999886
No 437
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.93 E-value=0.05 Score=52.68 Aligned_cols=91 Identities=12% Similarity=0.120 Sum_probs=49.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHH
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFK 154 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 154 (769)
+.+.++.+.|.+|.||||++..+...+ . ....+.++...-......+.++...-..............+.+.+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~-~----~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 87 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEF-G----GGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIE 87 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT------TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhc-c----CCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999998886 1 34456665433222222223333322211111133345556667777
Q ss_pred HHccCCEEEEEecccC
Q 046742 155 ILSRKKFVLLLDDIWN 170 (769)
Q Consensus 155 ~l~~k~~LlVlDdv~~ 170 (769)
....+++=+|+|..-.
T Consensus 88 ~a~~~~~nii~E~tl~ 103 (199)
T PF06414_consen 88 YAIENRYNIIFEGTLS 103 (199)
T ss_dssp HHHHCT--EEEE--TT
T ss_pred HHHHcCCCEEEecCCC
Confidence 7777888888898644
No 438
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.93 E-value=0.072 Score=47.31 Aligned_cols=103 Identities=25% Similarity=0.375 Sum_probs=59.5
Q ss_pred CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccc-cccCCcCCCEEeccCCCCcccchh-hhcCCCC
Q 046742 410 IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPS-GISRLVSLQHLNLSLTNIKELPEE-LKALVNL 487 (769)
Q Consensus 410 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L 487 (769)
+.++.+|+.+.+.. .++.+....|..+++|+.+.+..+ +..++. .+.++.+|+.+.+.. .+..++.. +..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 56777888888775 577788777888888888888775 555543 467777788888865 55555544 5568888
Q ss_pred cEEecCCCcCcCccCcccccCCcccceeeeec
Q 046742 488 KCLNLDYTKSLCRIPRHLISNFSMLYILRIVD 519 (769)
Q Consensus 488 ~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 519 (769)
+.+.+..+ +..++...+.++ +|+.+.+..
T Consensus 84 ~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 88888654 566666667776 777776653
No 439
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.93 E-value=0.1 Score=56.31 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=54.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCc----cccccc-HHH---
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQ----SWKNKR-LEI--- 147 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~-~~~--- 147 (769)
.-..++|.|..|+|||||++.++... . .-..+++....+.....++.+.+...-++... .....+ ...
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~-~---~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGT-Q---CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-C---CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 44588999999999999999998765 1 12345555555555677776766654332110 001111 111
Q ss_pred --HHHHHHHHH--ccCCEEEEEecccCc
Q 046742 148 --KAADIFKIL--SRKKFVLLLDDIWNR 171 (769)
Q Consensus 148 --~~~~l~~~l--~~k~~LlVlDdv~~~ 171 (769)
..-.+-+++ +++.+|+++||+-..
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 112233344 478999999998543
No 440
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.92 E-value=0.036 Score=54.47 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.|.|+|++|+||||+|+.++..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999887
No 441
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.91 E-value=0.072 Score=57.69 Aligned_cols=92 Identities=18% Similarity=0.193 Sum_probs=50.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCc----cccccc------
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQ----SWKNKR------ 144 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~------ 144 (769)
..-.+++|+|..|+|||||++.++... ..-..++++...+.....++..+....-..... .....+
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~----~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNT----SADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc----CCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence 445689999999999999999888765 122345555544444555554432221111000 001111
Q ss_pred HHHHHHHHHHHH--ccCCEEEEEecccC
Q 046742 145 LEIKAADIFKIL--SRKKFVLLLDDIWN 170 (769)
Q Consensus 145 ~~~~~~~l~~~l--~~k~~LlVlDdv~~ 170 (769)
.....-.+-+++ +++++|+++||+-.
T Consensus 232 ~~~~a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 232 GAYTATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeChHH
Confidence 111112233344 47899999999843
No 442
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.091 Score=60.90 Aligned_cols=102 Identities=18% Similarity=0.268 Sum_probs=66.6
Q ss_pred CCCCCchHHHHHHHHHhcc------C--CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGE------E--HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQE 127 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~------~--~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 127 (769)
..++|.++.+..|.+.+.. + ..-++.+.|+.|+|||.||++++..+ .+..+..+-++.+.. ..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~------~e 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEF------QE 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhh------hh
Confidence 4557888888888887743 1 34578899999999999999999988 565666566654442 22
Q ss_pred HHHHHhCCCCcccccccHHHHHHHHHHHHccCCE-EEEEecccCc
Q 046742 128 NIARKIGLYDQSWKNKRLEIKAADIFKILSRKKF-VLLLDDIWNR 171 (769)
Q Consensus 128 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~ 171 (769)
+.+..+.+. ..... +....+.+.++.++| ++.||||+..
T Consensus 633 -vskligsp~-gyvG~---e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 -VSKLIGSPP-GYVGK---EEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred -hhhccCCCc-ccccc---hhHHHHHHHHhcCCceEEEEechhhc
Confidence 333333322 22222 223356677777776 7779999753
No 443
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.89 E-value=0.052 Score=50.68 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=38.4
Q ss_pred CCCchHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc
Q 046742 58 TLGLESTFDEVWRCLGE--EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR 118 (769)
Q Consensus 58 ~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 118 (769)
+||....+.++++.+.. ....-|.|+|..|+||+.+|+.+.+.-.+..+.| +-|+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pf---i~vnc~~ 60 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPF---ISVNCAA 60 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-E---EEEETTT
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCe---EEEehhh
Confidence 47888888888887754 3335667999999999999999988652222333 4455554
No 444
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.88 E-value=0.023 Score=53.73 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999999886
No 445
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.87 E-value=0.041 Score=61.71 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=39.0
Q ss_pred CCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++|.+..++.+...+.......|.|+|+.|+|||++|+.+++..
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999988766655677899999999999999997653
No 446
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.87 E-value=0.068 Score=57.94 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=57.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCCc----ccccccH-----
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYDQ----SWKNKRL----- 145 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~----- 145 (769)
.-..++|.|.+|+|||||+.+++.... +.+-+.++++-++.. ....++..++...-.+... .....+.
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 335789999999999999999998862 235677777776654 4566777776654222110 0011111
Q ss_pred -HHHHHHHHHHH---ccCCEEEEEecccC
Q 046742 146 -EIKAADIFKIL---SRKKFVLLLDDIWN 170 (769)
Q Consensus 146 -~~~~~~l~~~l---~~k~~LlVlDdv~~ 170 (769)
...+..+-+++ +++++|+++|++-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 11122234444 37899999999854
No 447
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.86 E-value=0.02 Score=54.29 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999986
No 448
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.84 E-value=0.019 Score=55.58 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+|+|.|++|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 449
>PRK14529 adenylate kinase; Provisional
Probab=94.82 E-value=0.094 Score=51.23 Aligned_cols=84 Identities=17% Similarity=0.171 Sum_probs=46.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCc-EEEE-EEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHH
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKFSNTPNGFD-FVIW-VVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKIL 156 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 156 (769)
.|.|.|++|+||||+|+.++..+ .. .+.. ..++ -.+.........+++++.+- ...+.+.....+.+.+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~-~~-~~is~gdllr~~i~~~t~lg~~i~~~i~~G-------~lvpdei~~~lv~~~l 72 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKY-DL-AHIESGAIFREHIGGGTELGKKAKEYIDRG-------DLVPDDITIPMILETL 72 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CC-CCcccchhhhhhccCCChHHHHHHHHHhcc-------CcchHHHHHHHHHHHH
Confidence 37889999999999999999987 32 2221 1111 11222223334444444432 2233344455555665
Q ss_pred ccC-CEEEEEecccCc
Q 046742 157 SRK-KFVLLLDDIWNR 171 (769)
Q Consensus 157 ~~k-~~LlVlDdv~~~ 171 (769)
.+. ..=+|||..-..
T Consensus 73 ~~~~~~g~iLDGfPRt 88 (223)
T PRK14529 73 KQDGKNGWLLDGFPRN 88 (223)
T ss_pred hccCCCcEEEeCCCCC
Confidence 431 345889987543
No 450
>PRK08149 ATP synthase SpaL; Validated
Probab=94.82 E-value=0.14 Score=55.08 Aligned_cols=90 Identities=13% Similarity=0.209 Sum_probs=51.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc-cccHHHHHHHHHHHhCCCCc----ccccccH-----
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR-DLQIDRLQENIARKIGLYDQ----SWKNKRL----- 145 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~----~~~~~~~----- 145 (769)
.-..++|+|..|+|||||+..++... . -+.++...+.. ..+...+..+.........- .....+.
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~----~-~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS----E-ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC----C-CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 34578999999999999999998764 1 13333344433 33566666666654322110 0011111
Q ss_pred -HHHHHHHHHHH--ccCCEEEEEecccC
Q 046742 146 -EIKAADIFKIL--SRKKFVLLLDDIWN 170 (769)
Q Consensus 146 -~~~~~~l~~~l--~~k~~LlVlDdv~~ 170 (769)
......+-+++ +++++||++||+-.
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 11122233333 47999999999854
No 451
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.82 E-value=0.063 Score=57.34 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=31.4
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 64 TFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 64 ~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+.+++.+.......+.|.|+||+|||++.+.+.+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 45556666665666789999999999999999999988
No 452
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.80 E-value=0.068 Score=54.27 Aligned_cols=55 Identities=18% Similarity=0.125 Sum_probs=42.0
Q ss_pred CCCCCCCchHHHHH---HHHHhccC--CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCc
Q 046742 54 PIPQTLGLESTFDE---VWRCLGEE--HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFD 109 (769)
Q Consensus 54 ~~~~~vGr~~~~~~---l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~ 109 (769)
..+.+||..+..+. +.+++.+. .-+.|.++|++|.|||+||-.+++.+ ...-.|.
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF~ 96 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPFV 96 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh-CCCCCce
Confidence 34778998877665 56677654 35689999999999999999999998 4344553
No 453
>PRK13947 shikimate kinase; Provisional
Probab=94.77 E-value=0.025 Score=53.28 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.|.|+|++|+||||+|+.+++.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 454
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.072 Score=50.97 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.--+.+|.||.|.||||||..+..+.
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34588999999999999999998765
No 455
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.73 E-value=0.022 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36799999999999999998875
No 456
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.72 E-value=0.079 Score=56.88 Aligned_cols=90 Identities=18% Similarity=0.273 Sum_probs=52.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCCc----ccccccHHH---
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYDQ----SWKNKRLEI--- 147 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~~~--- 147 (769)
.-..++|.|..|+|||||...++... . -+.++++-++.. ....++....+..-++... .....+.-.
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-E----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-C----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 44578999999999999999999875 1 245667766554 3455555544332211110 001111111
Q ss_pred ---HHHHHHHHH--ccCCEEEEEecccC
Q 046742 148 ---KAADIFKIL--SRKKFVLLLDDIWN 170 (769)
Q Consensus 148 ---~~~~l~~~l--~~k~~LlVlDdv~~ 170 (769)
....+-+++ +++++|+++|++-.
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 111233333 47999999999854
No 457
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.71 E-value=0.053 Score=55.83 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=41.0
Q ss_pred CCCCCchHHHHHHHHHhcc------CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGE------EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..|+|.++.++++++.+.. .+-+++.++||.|.||||||..+.+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999953 466799999999999999999999887
No 458
>PRK13949 shikimate kinase; Provisional
Probab=94.70 E-value=0.028 Score=52.69 Aligned_cols=23 Identities=35% Similarity=0.312 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.|.|+|+.|+||||+++.++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999997
No 459
>PLN02165 adenylate isopentenyltransferase
Probab=94.70 E-value=0.029 Score=57.73 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=25.2
Q ss_pred ccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 73 GEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 73 ~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
......+|+|+|+.|+||||||..++...
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 44455699999999999999999999986
No 460
>PRK14528 adenylate kinase; Provisional
Probab=94.69 E-value=0.042 Score=52.47 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+.|.|.|++|+||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998876
No 461
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.68 E-value=0.14 Score=55.39 Aligned_cols=92 Identities=18% Similarity=0.305 Sum_probs=55.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCCc----ccccccH-H----
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYDQ----SWKNKRL-E---- 146 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~-~---- 146 (769)
-..++|.|.+|+|||||+.+++.... .++-+.++++-++.. ....+++.++...-..... .....+. .
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34789999999999999999877652 122245677766554 4567777777654322110 0011111 1
Q ss_pred -HHHHHHHHHH---ccCCEEEEEecccC
Q 046742 147 -IKAADIFKIL---SRKKFVLLLDDIWN 170 (769)
Q Consensus 147 -~~~~~l~~~l---~~k~~LlVlDdv~~ 170 (769)
...-.+-+++ +++++|+++|++-.
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 1122234444 57899999999854
No 462
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.67 E-value=0.024 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+|.|.|+.|+||||+|+.++..+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999886
No 463
>PLN02924 thymidylate kinase
Probab=94.66 E-value=0.13 Score=50.32 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=33.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIAR 131 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 131 (769)
...|+|-|+.|+||||+|+.+++.+. . ..+..+.+-..+......+.+++++.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~-~-~g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLK-G-LGVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-h-cCCCceeeeCCCCCChHHHHHHHHHh
Confidence 35799999999999999999999983 2 33444333222222334445555443
No 464
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.66 E-value=0.079 Score=49.95 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34689999999999999999999875
No 465
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.66 E-value=0.066 Score=53.28 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=23.0
Q ss_pred HHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 65 FDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 65 ~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+.+...+.... +..|.|++|.|||+++..+....
T Consensus 7 ~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 7 REAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 444544554332 68899999999998777776665
No 466
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.66 E-value=0.036 Score=50.03 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=33.0
Q ss_pred CCchHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 59 LGLESTFDEVWRCLGE--EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 59 vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
||+...+.++.+.+.. .....|.|+|..|+||+++|+.+...-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 6778888888887754 444567899999999999999988875
No 467
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.65 E-value=0.03 Score=53.34 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+..+|+|+|++|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998875
No 468
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.63 E-value=0.072 Score=54.07 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=39.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHH
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIAR 131 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 131 (769)
+.-+++.|+|.+|+|||++|.++.... ......++||..... .+.+.+...+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH
Confidence 456799999999999999999999987 344778999976664 4444444443
No 469
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.61 E-value=0.12 Score=55.58 Aligned_cols=92 Identities=22% Similarity=0.294 Sum_probs=56.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCCc----ccccccH------
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYDQ----SWKNKRL------ 145 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~------ 145 (769)
-..++|.|.+|+|||+|+.+++.... +.+-+.++++-++.. ....++.+++...-.+... .....+.
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV--GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 34789999999999999999988752 223467888877654 3566777776654222110 0011111
Q ss_pred HHHHHHHHHHH---ccCCEEEEEecccC
Q 046742 146 EIKAADIFKIL---SRKKFVLLLDDIWN 170 (769)
Q Consensus 146 ~~~~~~l~~~l---~~k~~LlVlDdv~~ 170 (769)
...+-.+-+++ +++++|+++||+-.
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 11122234454 36899999999854
No 470
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.61 E-value=0.13 Score=51.54 Aligned_cols=88 Identities=14% Similarity=0.165 Sum_probs=50.4
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHhhccCCCCCCcEE-EEEEeCcc-ccHHHHHHHHHHHhCCCCc----ccccccH----
Q 046742 77 VGIIGLYGMGEVGKTTLL-TRINNKFSNTPNGFDFV-IWVVLSRD-LQIDRLQENIARKIGLYDQ----SWKNKRL---- 145 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa-~~~~~~~~~~~~~f~~~-~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~---- 145 (769)
-..++|.|..|+|||+|| ..+++.. .-+.+ +++-++.. ....++.+++.+.-..... .....+.
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 347889999999999996 4455442 12333 56655554 4566777777654221110 0011111
Q ss_pred ------HHHHHHHHHHHccCCEEEEEecccCc
Q 046742 146 ------EIKAADIFKILSRKKFVLLLDDIWNR 171 (769)
Q Consensus 146 ------~~~~~~l~~~l~~k~~LlVlDdv~~~ 171 (769)
-..++.+++ +++.+|+++||+-..
T Consensus 144 ~a~~~a~aiAE~fr~--~G~~Vlvl~DslTr~ 173 (274)
T cd01132 144 LAPYTGCAMGEYFMD--NGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHH--CCCCEEEEEcChHHH
Confidence 122233333 478999999998654
No 471
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.60 E-value=0.032 Score=53.55 Aligned_cols=25 Identities=28% Similarity=0.220 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999986
No 472
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.60 E-value=0.15 Score=49.11 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..|+|.|+.|+||||+++.+++.+
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987
No 473
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.59 E-value=0.032 Score=51.93 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+++|+|+.|+|||||++.+...+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45689999999999999999999887
No 474
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.57 E-value=0.029 Score=54.58 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.--.|+|+|++|+|||||.+.++.-.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33589999999999999999998654
No 475
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.52 E-value=0.14 Score=50.83 Aligned_cols=79 Identities=13% Similarity=0.046 Sum_probs=44.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc--cHHHHHHHHHHHh--CCCCcc--cccccHHHHHHHH
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL--QIDRLQENIARKI--GLYDQS--WKNKRLEIKAADI 152 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l--~~~~~~--~~~~~~~~~~~~l 152 (769)
+|+|.|.+|+||||+|+.+.+.+. ..+ ..+..++..... +....-..+..+. +..-+. ....+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~-~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA-REG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH-hcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 589999999999999999998772 111 123444433221 2222222222222 111111 2556677777777
Q ss_pred HHHHccCC
Q 046742 153 FKILSRKK 160 (769)
Q Consensus 153 ~~~l~~k~ 160 (769)
+++.+++.
T Consensus 78 ~~L~~g~~ 85 (277)
T cd02029 78 RTYGETGR 85 (277)
T ss_pred HHHHcCCC
Confidence 77766543
No 476
>PRK14530 adenylate kinase; Provisional
Probab=94.51 E-value=0.031 Score=54.93 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+.|+|+|++|+||||+|+.++..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999887
No 477
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.50 E-value=0.025 Score=52.76 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 046742 80 IGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 80 v~I~G~gGiGKTtLa~~~~~~~ 101 (769)
|+|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999987
No 478
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.50 E-value=0.03 Score=53.27 Aligned_cols=24 Identities=29% Similarity=0.330 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
++++|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999999865
No 479
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.50 E-value=0.16 Score=46.24 Aligned_cols=26 Identities=38% Similarity=0.493 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-.+++|+|+.|.|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34689999999999999999998876
No 480
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.48 E-value=0.099 Score=53.80 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=42.7
Q ss_pred CCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQ 126 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 126 (769)
+.++=..+....+..++..+ +.|.|.|++|+||||+|++++... ... .+-|.++...+..+++
T Consensus 45 ~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l---~~~---~~rV~~~~~l~~~Dli 107 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARL---NWP---CVRVNLDSHVSRIDLV 107 (327)
T ss_pred CCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHH---CCC---eEEEEecCCCChhhcC
Confidence 45555556667777777543 468899999999999999999998 222 2345555544444333
No 481
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.46 E-value=0.055 Score=55.84 Aligned_cols=49 Identities=22% Similarity=0.233 Sum_probs=35.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQEN 128 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 128 (769)
.+++.+.|.||+||||+|...+-... .....+.-|......++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999777662 22244666766666666666654
No 482
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.23 Score=51.16 Aligned_cols=45 Identities=16% Similarity=0.086 Sum_probs=31.5
Q ss_pred CCCCchHHHHHHHHHhcc--------C----CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 57 QTLGLESTFDEVWRCLGE--------E----HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~~--------~----~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+.|-++.++-|.+.+.- . .=+-|.++||+|.|||-||++|+-..
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 345666555555554421 1 12357899999999999999999997
No 483
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.44 E-value=0.18 Score=50.63 Aligned_cols=59 Identities=32% Similarity=0.348 Sum_probs=38.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCC-------cEEEEEEeCcc-ccHHHHHHHHHHHhCCCC
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKFSNTPNGF-------DFVIWVVLSRD-LQIDRLQENIARKIGLYD 137 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f-------~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~ 137 (769)
++.|+|.||+||||++..++=.+-.-++-| ..+++|++... .++-.=++.+..+++++.
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 445679999999999988764441112223 35677766543 355566677778887754
No 484
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.44 E-value=0.031 Score=51.53 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 046742 80 IGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 80 v~I~G~gGiGKTtLa~~~~~~~ 101 (769)
|.|+|++|+||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999886
No 485
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.44 E-value=0.038 Score=51.10 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...++|.||+|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578899999999999999999884
No 486
>PRK13948 shikimate kinase; Provisional
Probab=94.44 E-value=0.044 Score=51.82 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
....|+++|+.|+||||+++.+++.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999987
No 487
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.43 E-value=0.028 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+|+|.|.+|+||||+|+.+...+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999987
No 488
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.43 E-value=0.038 Score=58.45 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=51.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHH---HHHHhCCCCcccccccHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQEN---IARKIGLYDQSWKNKRLEIKAADI 152 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~~~~~~~l 152 (769)
....|.|.|+.|.||||+++.+.... .......++.- ... .+..... +..+.. ...+.......+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~ti-Edp--~E~~~~~~~~~i~q~e------vg~~~~~~~~~l 188 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIITI-EDP--IEYVHRNKRSLINQRE------VGLDTLSFANAL 188 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEEE-cCC--hhhhccCccceEEccc------cCCCCcCHHHHH
Confidence 34789999999999999999988876 22333334432 111 1111100 000100 111122345567
Q ss_pred HHHHccCCEEEEEecccCccccc
Q 046742 153 FKILSRKKFVLLLDDIWNRVDLE 175 (769)
Q Consensus 153 ~~~l~~k~~LlVlDdv~~~~~~~ 175 (769)
+..++..+=.|++|++.+.+...
T Consensus 189 ~~~lr~~pd~i~vgEird~~~~~ 211 (343)
T TIGR01420 189 RAALREDPDVILIGEMRDLETVE 211 (343)
T ss_pred HHhhccCCCEEEEeCCCCHHHHH
Confidence 77788888899999997665443
No 489
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.43 E-value=0.17 Score=54.28 Aligned_cols=90 Identities=21% Similarity=0.300 Sum_probs=50.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc-cccHHHHHHHHHHHhCCCCc----ccccccH-H---
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR-DLQIDRLQENIARKIGLYDQ----SWKNKRL-E--- 146 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~----~~~~~~~-~--- 146 (769)
.-..++|.|..|+|||||+..++... .. +..+...++. .....++...+...-.+... .....+. .
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~----~~-~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYT----EA-DVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCC----CC-CEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 34578999999999999999888765 11 2333444444 33455666655543221110 0011111 1
Q ss_pred --HHHHHHHHHH--ccCCEEEEEecccC
Q 046742 147 --IKAADIFKIL--SRKKFVLLLDDIWN 170 (769)
Q Consensus 147 --~~~~~l~~~l--~~k~~LlVlDdv~~ 170 (769)
...-.+-+++ +++++|+++||+-.
T Consensus 211 a~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 211 AAFYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 1111223333 47899999999854
No 490
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=94.43 E-value=0.32 Score=48.60 Aligned_cols=169 Identities=11% Similarity=0.108 Sum_probs=85.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc--ccHHHHHH--HHHHHh-CCCCc------------cc-
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD--LQIDRLQE--NIARKI-GLYDQ------------SW- 140 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~--~i~~~l-~~~~~------------~~- 140 (769)
+.+|+|+.|+|||.|.+.+..-. -+...-+-++||.-..+ +-.+.... ++.+.- ....+ .+
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~-lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~P~Fv 167 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQ-LIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTFRPKFV 167 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcC-cccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeccccccccccce
Confidence 45678999999999999987764 44566677888863221 11222222 222210 00000 00
Q ss_pred ----------ccccHHHHHHHHHHHHccCCEEEEEecccCc----ccccccCCCCCC-------CCCCcEEEEeeccCCc
Q 046742 141 ----------KNKRLEIKAADIFKILSRKKFVLLLDDIWNR----VDLEKLGIPPMN-------TNGSSKIVFTTRSAGG 199 (769)
Q Consensus 141 ----------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----~~~~~~~~~~~~-------~~~~~~iivTtR~~~v 199 (769)
..-+++.-...+.+.-+..++-||+|+..+. ..+..+...+|. ...|-.|+|.--+-..
T Consensus 168 ~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECMe~Lg~~~~is~fFHAlPSKL~~rfp~CTgy~VfVVLHNmnP 247 (369)
T PF02456_consen 168 EMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECMEKLGSHKSISKFFHALPSKLHDRFPKCTGYYVFVVLHNMNP 247 (369)
T ss_pred eecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHHHHhcCCCChhHHHhcCcHHHhhhccCCceeEEEEEeccCCc
Confidence 1112222233455666778999999986542 345555444442 1134444443332211
Q ss_pred cccc-cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHHH
Q 046742 200 CGLM-EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGRA 262 (769)
Q Consensus 200 ~~~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 262 (769)
.... +.... | +-.+......+.-....+.+-|-...+|+|.+|.++-..
T Consensus 248 R~d~gGNI~~-----L---------KiqAK~HIiSp~~~p~QlsRFin~yt~glp~~i~~LLKd 297 (369)
T PF02456_consen 248 RRDIGGNIAN-----L---------KIQAKCHIISPKMHPSQLSRFINNYTKGLPTAISLLLKD 297 (369)
T ss_pred ccccCCCccc-----h---------hhhceeeeecCCCCHHHHHHHHHHhccCCChhHHHHHHH
Confidence 1110 00000 0 001111111233344677888999999999999776643
No 491
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.41 E-value=0.18 Score=54.37 Aligned_cols=94 Identities=17% Similarity=0.277 Sum_probs=56.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCCc----cccccc-HH---
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYDQ----SWKNKR-LE--- 146 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~~~~~~-~~--- 146 (769)
.-..++|.|.+|+|||||+.+++.... .++-..++++-++.. ....+++.++...-.+... .....+ ..
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 334789999999999999999887652 122346777777554 4567777777544222110 001111 11
Q ss_pred --HHHHHHHHHH---ccCCEEEEEecccCc
Q 046742 147 --IKAADIFKIL---SRKKFVLLLDDIWNR 171 (769)
Q Consensus 147 --~~~~~l~~~l---~~k~~LlVlDdv~~~ 171 (769)
...-.+-+++ +++.+|+++||+-..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 1222344555 468999999998543
No 492
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.40 E-value=0.26 Score=51.27 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=28.4
Q ss_pred HHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 66 DEVWRCLG--EEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 66 ~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.++.+.+. .....+|+|.|++|+|||||+..+...+
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444443 3567799999999999999999988887
No 493
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.38 E-value=0.076 Score=54.82 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=35.6
Q ss_pred CCCCCCchHHHHH---HHHHhccCC--ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 55 IPQTLGLESTFDE---VWRCLGEEH--VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 55 ~~~~vGr~~~~~~---l~~~L~~~~--~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+||..+..+. +.+++.+.. -+.|.+.|++|.|||+||..+++.+
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL 74 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL 74 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh
Confidence 3678999887776 466665543 5788999999999999999999998
No 494
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=94.37 E-value=0.32 Score=51.98 Aligned_cols=80 Identities=24% Similarity=0.272 Sum_probs=62.1
Q ss_pred CCCC-CCchHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc-------cHH
Q 046742 55 IPQT-LGLESTFDEVWRCLG---EEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL-------QID 123 (769)
Q Consensus 55 ~~~~-vGr~~~~~~l~~~L~---~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-------~~~ 123 (769)
.+.+ |||+.+++.|.+-|. +++..+-.|.|.=|.|||.+++.+.+... ...| .+..|.++.+. ...
T Consensus 23 l~~~~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~--~~~f-vvs~v~ls~e~~lh~~~g~~~ 99 (416)
T PF10923_consen 23 LDHIAVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERAL--EKGF-VVSEVDLSPERPLHGTGGQLE 99 (416)
T ss_pred CcceeechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHH--HcCC-EEEEEecCCCcccccccccHH
Confidence 3444 999999999988875 46677789999999999999999988862 3445 45677766532 567
Q ss_pred HHHHHHHHHhCCCC
Q 046742 124 RLQENIARKIGLYD 137 (769)
Q Consensus 124 ~~~~~i~~~l~~~~ 137 (769)
.++++|++.+....
T Consensus 100 ~~Yr~l~~nL~t~~ 113 (416)
T PF10923_consen 100 ALYRELMRNLSTKT 113 (416)
T ss_pred HHHHHHHHhcCCCC
Confidence 89999999998654
No 495
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.37 E-value=0.039 Score=51.92 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...|+|+|+.|+||||+|+.++...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3468999999999999999999986
No 496
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=94.37 E-value=0.1 Score=56.49 Aligned_cols=91 Identities=24% Similarity=0.248 Sum_probs=48.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCC-----cccccccHH----
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYD-----QSWKNKRLE---- 146 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~---- 146 (769)
.-..++|.|..|+|||||++.++... .....++-...-+.....++..+....-.+.. .........
T Consensus 162 ~Gq~~~I~G~sG~GKStLl~~I~~~~----~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~ 237 (440)
T TIGR01026 162 KGQRIGIFAGSGVGKSTLLGMIARNT----EADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKG 237 (440)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 34578999999999999999988875 22222222222233345555544443211110 000111111
Q ss_pred -HHHHHHHHHH--ccCCEEEEEecccC
Q 046742 147 -IKAADIFKIL--SRKKFVLLLDDIWN 170 (769)
Q Consensus 147 -~~~~~l~~~l--~~k~~LlVlDdv~~ 170 (769)
..+-.+-+++ +++.+|+++||+-.
T Consensus 238 ~~~a~t~AE~frd~G~~Vll~~DslTr 264 (440)
T TIGR01026 238 AYVATAIAEYFRDQGKDVLLLMDSVTR 264 (440)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 1111222333 47899999999854
No 497
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.37 E-value=0.16 Score=54.69 Aligned_cols=90 Identities=21% Similarity=0.247 Sum_probs=50.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc-cccHHHHHHHHHHHhCCCC-----cccccccHHHH-
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR-DLQIDRLQENIARKIGLYD-----QSWKNKRLEIK- 148 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~- 148 (769)
.-..++|.|..|+|||||++.++... ..+..+++.++. .....+++.+....-.... ...........
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 44588999999999999999888765 123344444443 4455555665443211100 00011111111
Q ss_pred ----HHHHHHHH--ccCCEEEEEecccC
Q 046742 149 ----AADIFKIL--SRKKFVLLLDDIWN 170 (769)
Q Consensus 149 ----~~~l~~~l--~~k~~LlVlDdv~~ 170 (769)
.-.+-+++ +++++|+++||+-.
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 11233344 47899999999854
No 498
>COG4240 Predicted kinase [General function prediction only]
Probab=94.35 E-value=0.19 Score=47.83 Aligned_cols=84 Identities=14% Similarity=0.036 Sum_probs=50.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhC---CCCcccccccHHHHHHH
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIG---LYDQSWKNKRLEIKAAD 151 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~---~~~~~~~~~~~~~~~~~ 151 (769)
+++-+++|.|+-|.||||++..++..+. .++. ..+.-.+..+-.-...-.-.++++.. .........|..-....
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~-~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLA-AKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHH-Hhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 5677999999999999999999999882 2232 34555443332222222233333321 11111256777777777
Q ss_pred HHHHHccCC
Q 046742 152 IFKILSRKK 160 (769)
Q Consensus 152 l~~~l~~k~ 160 (769)
+....+++.
T Consensus 126 Lnai~~g~~ 134 (300)
T COG4240 126 LNAIARGGP 134 (300)
T ss_pred HHHHhcCCC
Confidence 777777763
No 499
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.35 E-value=0.046 Score=53.34 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=28.0
Q ss_pred HHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 70 RCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 70 ~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+.+.+.++++|+++|+.|+|||||..++.+..
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44455789999999999999999999999886
No 500
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.32 E-value=0.04 Score=53.67 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|+|+|++|+||||||+.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999876
Done!