Query 046742
Match_columns 769
No_of_seqs 364 out of 3736
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 06:33:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 7.7E-42 2.6E-46 384.8 22.6 291 59-367 131-471 (549)
2 1vt4_I APAF-1 related killer D 100.0 7.5E-36 2.6E-40 338.3 17.0 280 57-360 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-33 4.6E-38 352.4 27.1 297 52-366 120-451 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 8.8E-32 3E-36 307.8 21.6 292 52-363 120-448 (591)
5 4fmz_A Internalin; leucine ric 99.9 1.3E-23 4.5E-28 223.5 18.6 293 389-734 41-345 (347)
6 2id5_A Lingo-1, leucine rich r 99.9 3.1E-22 1.1E-26 222.7 23.4 298 375-735 16-333 (477)
7 3vq2_A TLR4, TOLL-like recepto 99.9 3.1E-22 1.1E-26 229.9 22.8 150 375-526 16-169 (606)
8 2z81_A CD282 antigen, TOLL-lik 99.9 3.3E-22 1.1E-26 226.8 22.6 166 378-551 13-183 (549)
9 4fmz_A Internalin; leucine ric 99.9 9.1E-22 3.1E-26 209.3 21.9 296 375-722 49-344 (347)
10 2z63_A TOLL-like receptor 4, v 99.9 8.7E-22 3E-26 224.5 21.9 149 374-525 11-164 (570)
11 3o6n_A APL1; leucine-rich repe 99.9 1.1E-21 3.6E-26 212.3 21.3 307 389-752 42-364 (390)
12 3bz5_A Internalin-J, INLJ; leu 99.9 3.6E-22 1.2E-26 219.4 17.3 146 389-554 39-184 (457)
13 3v47_A TOLL-like receptor 5B a 99.9 2.8E-22 9.7E-27 221.7 16.5 336 374-738 14-411 (455)
14 1o6v_A Internalin A; bacterial 99.9 1.8E-21 6.1E-26 215.6 21.4 256 377-662 53-319 (466)
15 4ecn_A Leucine-rich repeat pro 99.9 8.3E-22 2.8E-26 230.2 18.9 310 387-721 443-816 (876)
16 3t6q_A CD180 antigen; protein- 99.9 2.9E-21 9.9E-26 221.8 22.5 169 375-551 17-190 (606)
17 1o6v_A Internalin A; bacterial 99.9 3E-21 1E-25 213.8 21.5 243 390-662 44-297 (466)
18 4eco_A Uncharacterized protein 99.9 6.8E-22 2.3E-26 227.1 16.2 320 388-734 202-599 (636)
19 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-21 4E-26 215.4 17.2 258 374-669 46-303 (457)
20 3rgz_A Protein brassinosteroid 99.9 7.9E-22 2.7E-26 232.0 16.4 323 381-738 189-554 (768)
21 3oja_B Anopheles plasmodium-re 99.9 3.4E-21 1.2E-25 220.0 21.0 305 390-751 49-369 (597)
22 4eco_A Uncharacterized protein 99.9 3.7E-22 1.3E-26 229.3 13.1 300 407-734 198-578 (636)
23 3rgz_A Protein brassinosteroid 99.9 7.1E-22 2.4E-26 232.4 14.6 68 627-705 488-556 (768)
24 3vq2_A TLR4, TOLL-like recepto 99.9 3E-21 1E-25 221.7 19.1 143 377-521 39-192 (606)
25 2z7x_B TOLL-like receptor 1, v 99.9 1E-20 3.6E-25 212.9 22.0 143 396-551 4-149 (520)
26 4ecn_A Leucine-rich repeat pro 99.9 1.8E-21 6.1E-26 227.4 15.1 290 410-734 444-818 (876)
27 2z7x_B TOLL-like receptor 1, v 99.9 8.4E-21 2.9E-25 213.7 19.5 141 374-522 4-150 (520)
28 3j0a_A TOLL-like receptor 5; m 99.9 1.2E-20 4.2E-25 224.2 21.6 173 373-551 7-185 (844)
29 3o6n_A APL1; leucine-rich repe 99.8 2.1E-20 7E-25 202.2 19.2 294 375-722 50-350 (390)
30 2id5_A Lingo-1, leucine rich r 99.8 1.5E-20 5.3E-25 209.0 18.6 280 396-736 15-310 (477)
31 3t6q_A CD180 antigen; protein- 99.8 1.1E-20 3.8E-25 216.9 17.9 137 387-525 52-194 (606)
32 1ziw_A TOLL-like receptor 3; i 99.8 1.4E-20 4.9E-25 219.0 18.7 171 374-553 8-184 (680)
33 2z63_A TOLL-like receptor 4, v 99.8 1.4E-20 4.7E-25 214.6 18.1 134 387-522 47-189 (570)
34 3v47_A TOLL-like receptor 5B a 99.8 1.9E-20 6.5E-25 207.0 18.4 322 396-736 14-385 (455)
35 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 4.4E-20 1.5E-24 209.6 20.8 142 373-522 34-181 (562)
36 3oja_B Anopheles plasmodium-re 99.8 4E-20 1.4E-24 211.1 19.2 294 375-722 56-356 (597)
37 4fcg_A Uncharacterized protein 99.8 3.3E-20 1.1E-24 194.9 15.7 108 413-523 80-196 (328)
38 3j0a_A TOLL-like receptor 5; m 99.8 2.2E-19 7.4E-24 213.5 23.6 152 395-553 7-161 (844)
39 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 4.9E-19 1.7E-23 201.0 23.6 146 393-552 32-181 (562)
40 2z81_A CD282 antigen, TOLL-lik 99.8 1.4E-19 4.7E-24 205.3 18.1 159 387-553 45-209 (549)
41 1xku_A Decorin; proteoglycan, 99.8 3.1E-19 1.1E-23 188.2 19.0 242 391-661 30-272 (330)
42 1ziw_A TOLL-like receptor 3; i 99.8 2.3E-19 8E-24 208.8 19.3 329 395-736 7-395 (680)
43 1ogq_A PGIP-2, polygalacturona 99.8 5.8E-20 2E-24 191.8 12.7 135 392-527 50-191 (313)
44 2z80_A TOLL-like receptor 2, v 99.8 8.2E-20 2.8E-24 194.5 12.4 273 397-737 36-316 (353)
45 2ft3_A Biglycan; proteoglycan, 99.8 4.2E-19 1.4E-23 187.3 17.3 294 392-732 33-330 (332)
46 4fcg_A Uncharacterized protein 99.8 2.7E-19 9.3E-24 187.9 15.4 226 436-718 79-308 (328)
47 4g8a_A TOLL-like receptor 4; l 99.8 2.2E-18 7.6E-23 199.0 23.3 147 375-524 36-187 (635)
48 4g8a_A TOLL-like receptor 4; l 99.8 4.4E-18 1.5E-22 196.5 20.2 126 375-502 57-189 (635)
49 3zyi_A Leucine-rich repeat-con 99.7 1.3E-17 4.3E-22 183.9 17.7 236 375-662 59-300 (452)
50 1jl5_A Outer protein YOPM; leu 99.7 2.9E-17 9.8E-22 180.2 20.1 141 392-554 111-251 (454)
51 2z66_A Variable lymphocyte rec 99.7 1.4E-17 4.7E-22 173.5 16.5 125 396-523 11-139 (306)
52 2ft3_A Biglycan; proteoglycan, 99.7 1.8E-17 6E-22 174.8 17.0 246 414-706 33-282 (332)
53 3zyj_A Leucine-rich repeat-con 99.7 1.7E-17 5.8E-22 182.1 17.4 236 375-662 48-289 (440)
54 1ogq_A PGIP-2, polygalacturona 99.7 1.1E-17 3.6E-22 174.6 14.3 247 414-733 50-302 (313)
55 3zyi_A Leucine-rich repeat-con 99.7 2.2E-17 7.4E-22 182.0 17.4 243 394-734 56-302 (452)
56 3zyj_A Leucine-rich repeat-con 99.7 3.7E-17 1.3E-21 179.4 18.0 243 394-734 45-291 (440)
57 1xku_A Decorin; proteoglycan, 99.7 1.5E-16 5.1E-21 167.6 21.2 246 414-705 31-280 (330)
58 3g06_A SSPH2 (leucine-rich rep 99.7 1.2E-16 4.2E-21 180.6 20.9 74 629-721 221-294 (622)
59 3o53_A Protein LRIM1, AGAP0063 99.7 3.5E-18 1.2E-22 178.8 7.8 285 394-725 12-300 (317)
60 2z66_A Variable lymphocyte rec 99.7 4.6E-17 1.6E-21 169.5 15.1 146 375-523 12-163 (306)
61 1ozn_A Reticulon 4 receptor; N 99.7 3.1E-17 1.1E-21 168.9 12.4 128 393-521 33-164 (285)
62 2z80_A TOLL-like receptor 2, v 99.7 2.6E-16 9E-21 167.3 18.4 272 411-743 28-310 (353)
63 1jl5_A Outer protein YOPM; leu 99.7 3.8E-16 1.3E-20 171.3 19.5 272 392-736 131-410 (454)
64 3g06_A SSPH2 (leucine-rich rep 99.7 4.8E-16 1.6E-20 175.8 20.7 253 373-698 43-295 (622)
65 1ozn_A Reticulon 4 receptor; N 99.7 2E-16 6.8E-21 162.8 15.5 217 395-662 14-235 (285)
66 3o53_A Protein LRIM1, AGAP0063 99.7 9.1E-17 3.1E-21 168.0 11.8 239 415-735 11-250 (317)
67 3oja_A Leucine-rich immune mol 99.7 2.1E-16 7.3E-21 175.0 14.8 237 411-719 31-270 (487)
68 2qen_A Walker-type ATPase; unk 99.7 1.2E-15 4E-20 162.2 17.4 287 55-360 11-348 (350)
69 3oja_A Leucine-rich immune mol 99.7 8.4E-17 2.9E-21 178.3 8.7 241 390-701 32-276 (487)
70 2xwt_C Thyrotropin receptor; s 99.7 4.8E-16 1.6E-20 155.4 13.3 103 415-520 32-140 (239)
71 1h6u_A Internalin H; cell adhe 99.7 5.6E-16 1.9E-20 161.1 13.9 149 388-552 37-185 (308)
72 1p9a_G Platelet glycoprotein I 99.6 4.6E-16 1.6E-20 160.0 12.4 150 389-548 7-156 (290)
73 1h6u_A Internalin H; cell adhe 99.6 1.4E-15 4.7E-20 158.1 14.4 201 400-662 27-227 (308)
74 2o6q_A Variable lymphocyte rec 99.6 1.9E-15 6.4E-20 154.1 14.9 166 375-549 21-190 (270)
75 2o6q_A Variable lymphocyte rec 99.6 2.2E-15 7.4E-20 153.6 14.3 146 394-548 18-165 (270)
76 2fna_A Conserved hypothetical 99.6 1.1E-14 3.9E-19 155.0 20.2 283 56-359 13-355 (357)
77 2xwt_C Thyrotropin receptor; s 99.6 1.5E-15 5.3E-20 151.7 12.1 211 426-724 23-239 (239)
78 2z62_A TOLL-like receptor 4, v 99.6 3.9E-15 1.3E-19 152.4 14.6 218 376-641 13-236 (276)
79 1z7x_W Ribonuclease inhibitor; 99.6 1.1E-16 3.9E-21 177.0 3.1 207 392-601 3-237 (461)
80 3rfs_A Internalin B, repeat mo 99.6 1.9E-15 6.4E-20 154.2 11.7 154 387-550 36-191 (272)
81 1wwl_A Monocyte differentiatio 99.6 1.5E-16 5.2E-21 165.9 3.5 248 391-701 42-309 (312)
82 3ogk_B Coronatine-insensitive 99.6 4.4E-16 1.5E-20 178.1 7.2 199 390-598 162-385 (592)
83 2z62_A TOLL-like receptor 4, v 99.6 8.5E-15 2.9E-19 149.8 16.0 212 398-661 13-233 (276)
84 3rfs_A Internalin B, repeat mo 99.6 4.6E-15 1.6E-19 151.3 13.6 169 375-551 46-216 (272)
85 1w5s_A Origin recognition comp 99.6 1E-14 3.5E-19 158.7 14.8 288 56-345 22-371 (412)
86 4ay9_X Follicle-stimulating ho 99.6 1E-14 3.4E-19 154.7 13.2 238 397-661 14-255 (350)
87 1h6t_A Internalin B; cell adhe 99.6 1E-14 3.4E-19 150.2 12.8 172 386-602 40-211 (291)
88 2ast_B S-phase kinase-associat 99.6 2.1E-15 7.2E-20 159.2 7.9 124 394-520 49-178 (336)
89 1p9a_G Platelet glycoprotein I 99.6 1.2E-14 4.2E-19 149.4 13.0 168 375-553 15-185 (290)
90 3m19_A Variable lymphocyte rec 99.6 2.4E-14 8E-19 144.2 13.8 170 375-553 19-192 (251)
91 4ay9_X Follicle-stimulating ho 99.5 5.8E-14 2E-18 148.8 16.9 238 417-720 12-255 (350)
92 3m19_A Variable lymphocyte rec 99.5 3.1E-14 1.1E-18 143.3 13.9 175 393-602 15-190 (251)
93 4ezg_A Putative uncharacterize 99.5 1.9E-14 6.5E-19 139.0 11.6 152 389-552 41-193 (197)
94 2ast_B S-phase kinase-associat 99.5 3.6E-15 1.2E-19 157.5 6.4 126 416-550 49-178 (336)
95 3ogk_B Coronatine-insensitive 99.5 4.4E-15 1.5E-19 169.8 7.2 306 390-722 190-524 (592)
96 3e6j_A Variable lymphocyte rec 99.5 8E-14 2.8E-18 138.0 13.6 145 377-524 26-173 (229)
97 1m9s_A Internalin B; cell inva 99.5 3.1E-14 1.1E-18 160.8 11.2 152 387-554 38-189 (605)
98 2p1m_B Transport inhibitor res 99.5 4.2E-15 1.5E-19 170.0 3.1 329 392-735 105-494 (594)
99 4ezg_A Putative uncharacterize 99.5 8.7E-14 3E-18 134.3 11.8 144 375-522 49-193 (197)
100 1z7x_W Ribonuclease inhibitor; 99.5 3.3E-15 1.1E-19 165.2 1.9 313 391-736 55-412 (461)
101 1h6t_A Internalin B; cell adhe 99.5 2.2E-13 7.6E-18 140.1 14.7 164 374-553 50-213 (291)
102 2ca6_A RAN GTPase-activating p 99.5 1.5E-14 5.3E-19 155.7 6.3 156 394-552 11-199 (386)
103 2v9t_B SLIT homolog 2 protein 99.5 1.7E-13 5.8E-18 134.7 13.1 129 392-522 32-164 (220)
104 1m9s_A Internalin B; cell inva 99.5 8.6E-14 2.9E-18 157.2 11.8 140 393-548 22-161 (605)
105 2p1m_B Transport inhibitor res 99.5 1.4E-14 4.7E-19 165.8 4.8 82 390-472 154-245 (594)
106 1wwl_A Monocyte differentiatio 99.5 3.4E-14 1.2E-18 148.0 7.4 34 591-640 274-307 (312)
107 1xeu_A Internalin C; cellular 99.5 9.9E-14 3.4E-18 140.4 10.4 154 383-553 32-185 (263)
108 2v9t_B SLIT homolog 2 protein 99.5 2.3E-13 7.8E-18 133.7 12.3 150 395-552 14-164 (220)
109 4glp_A Monocyte differentiatio 99.5 8.3E-14 2.8E-18 145.0 9.4 153 393-549 65-233 (310)
110 2o6s_A Variable lymphocyte rec 99.5 6E-13 2.1E-17 129.6 14.9 144 378-524 15-162 (208)
111 2v70_A SLIT-2, SLIT homolog 2 99.5 2.8E-13 9.7E-18 133.0 12.1 127 394-522 34-165 (220)
112 3goz_A Leucine-rich repeat-con 99.4 2.3E-13 8E-18 144.9 9.9 262 397-698 3-295 (362)
113 2v70_A SLIT-2, SLIT homolog 2 99.4 7E-13 2.4E-17 130.2 12.4 149 395-552 14-165 (220)
114 1xeu_A Internalin C; cellular 99.4 6.6E-14 2.3E-18 141.7 5.1 167 390-602 17-183 (263)
115 2o6s_A Variable lymphocyte rec 99.4 5.9E-13 2E-17 129.7 11.7 147 395-550 10-158 (208)
116 1a9n_A U2A', U2A'; complex (nu 99.4 2.4E-13 8.2E-18 128.6 7.8 127 391-521 18-151 (176)
117 2ell_A Acidic leucine-rich nuc 99.4 4.1E-13 1.4E-17 126.0 8.8 130 392-524 24-161 (168)
118 2xot_A Amphoterin-induced prot 99.4 7.5E-13 2.6E-17 140.8 11.9 169 375-552 23-201 (361)
119 3e6j_A Variable lymphocyte rec 99.4 1.1E-12 3.9E-17 129.6 12.4 149 394-552 21-171 (229)
120 2ca6_A RAN GTPase-activating p 99.4 2.1E-13 7.2E-18 146.8 7.2 239 390-662 30-313 (386)
121 2je0_A Acidic leucine-rich nuc 99.4 4.7E-13 1.6E-17 122.7 8.5 124 392-518 17-148 (149)
122 2v1u_A Cell division control p 99.4 6.4E-12 2.2E-16 135.2 17.0 284 56-344 19-350 (387)
123 2qby_B CDC6 homolog 3, cell di 99.4 9.5E-12 3.3E-16 133.7 17.8 219 56-280 20-271 (384)
124 2qby_A CDC6 homolog 1, cell di 99.3 2.6E-12 8.8E-17 138.3 11.4 222 56-279 20-272 (386)
125 1fnn_A CDC6P, cell division co 99.3 4.4E-11 1.5E-15 128.7 20.8 286 56-345 17-351 (389)
126 4glp_A Monocyte differentiatio 99.3 1.7E-12 6E-17 134.9 9.2 134 389-523 114-264 (310)
127 1w8a_A SLIT protein; signaling 99.3 5.9E-12 2E-16 120.7 11.0 129 395-525 11-141 (192)
128 1a9n_A U2A', U2A'; complex (nu 99.3 3.8E-12 1.3E-16 120.3 9.4 146 402-554 7-154 (176)
129 2o6r_A Variable lymphocyte rec 99.3 1.3E-11 4.5E-16 116.6 13.1 130 394-526 9-140 (177)
130 2wfh_A SLIT homolog 2 protein 99.3 1.2E-11 4.2E-16 118.5 12.9 125 395-523 13-139 (193)
131 3goz_A Leucine-rich repeat-con 99.3 2E-12 7E-17 137.6 7.6 271 418-737 2-299 (362)
132 3cvr_A Invasion plasmid antige 99.3 8.2E-12 2.8E-16 139.4 12.3 134 393-553 60-193 (571)
133 1njg_A DNA polymerase III subu 99.3 2.2E-11 7.5E-16 121.8 13.3 196 56-263 23-231 (250)
134 2xot_A Amphoterin-induced prot 99.3 1.2E-11 4E-16 131.6 11.5 154 395-554 21-177 (361)
135 2ell_A Acidic leucine-rich nuc 99.2 3.8E-11 1.3E-15 112.4 12.4 128 375-504 29-165 (168)
136 2chg_A Replication factor C sm 99.2 4E-11 1.4E-15 118.0 12.6 184 56-260 17-204 (226)
137 4b8c_D Glucose-repressible alc 99.2 1.4E-11 4.7E-16 142.8 9.9 114 410-527 220-333 (727)
138 1dce_A Protein (RAB geranylger 99.2 5.3E-12 1.8E-16 141.7 5.8 138 396-546 427-566 (567)
139 1dce_A Protein (RAB geranylger 99.2 2.3E-11 7.8E-16 136.5 10.6 121 393-517 442-567 (567)
140 2je0_A Acidic leucine-rich nuc 99.2 2.9E-11 1E-15 110.7 9.4 130 411-547 14-147 (149)
141 1ds9_A Outer arm dynein; leuci 99.2 6.3E-13 2.2E-17 128.3 -4.4 132 410-546 44-180 (198)
142 2wfh_A SLIT homolog 2 protein 99.2 1.1E-10 3.7E-15 111.8 11.0 121 375-497 15-138 (193)
143 3cvr_A Invasion plasmid antige 99.2 9.9E-11 3.4E-15 130.6 12.0 157 378-557 67-224 (571)
144 1w8a_A SLIT protein; signaling 99.2 1E-10 3.5E-15 112.0 10.3 124 375-500 13-141 (192)
145 4b8c_D Glucose-repressible alc 99.1 5.2E-11 1.8E-15 138.0 8.9 151 392-553 173-329 (727)
146 2o6r_A Variable lymphocyte rec 99.1 1.7E-10 5.9E-15 108.9 10.8 123 377-501 14-140 (177)
147 3g39_A Variable lymphocyte rec 99.1 5.3E-10 1.8E-14 104.6 11.7 102 417-523 12-115 (170)
148 2r9u_A Variable lymphocyte rec 99.1 4.1E-10 1.4E-14 105.8 10.2 101 417-522 15-117 (174)
149 2r9u_A Variable lymphocyte rec 99.0 6.9E-10 2.4E-14 104.2 10.5 105 395-502 15-121 (174)
150 1sxj_B Activator 1 37 kDa subu 99.0 4.8E-10 1.6E-14 117.2 10.2 184 56-261 21-211 (323)
151 3g39_A Variable lymphocyte rec 99.0 8E-10 2.7E-14 103.4 9.8 102 394-497 11-114 (170)
152 1ds9_A Outer arm dynein; leuci 99.0 9.2E-12 3.1E-16 120.1 -5.4 126 388-516 44-180 (198)
153 1iqp_A RFCS; clamp loader, ext 98.9 2.4E-09 8.3E-14 112.0 9.9 185 55-261 24-213 (327)
154 3te6_A Regulatory protein SIR3 98.9 8.3E-09 2.8E-13 105.2 11.9 168 58-228 22-212 (318)
155 3sb4_A Hypothetical leucine ri 98.8 1.9E-08 6.4E-13 105.3 12.9 283 391-727 24-326 (329)
156 3sb4_A Hypothetical leucine ri 98.8 1.1E-08 3.8E-13 107.0 11.1 79 391-471 48-157 (329)
157 2chq_A Replication factor C sm 98.8 2.7E-08 9.1E-13 103.6 13.0 180 55-259 16-203 (319)
158 2ifg_A High affinity nerve gro 98.8 1.3E-08 4.6E-13 107.3 10.4 98 398-496 14-114 (347)
159 1hqc_A RUVB; extended AAA-ATPa 98.8 1.6E-07 5.5E-12 97.9 18.4 177 54-263 10-214 (324)
160 1jr3_A DNA polymerase III subu 98.8 4.4E-08 1.5E-12 104.4 13.2 195 55-260 15-221 (373)
161 4fdw_A Leucine rich hypothetic 98.7 2.1E-07 7E-12 99.6 17.2 103 410-519 132-235 (401)
162 2ifg_A High affinity nerve gro 98.7 4.3E-08 1.5E-12 103.4 11.3 103 417-524 11-117 (347)
163 1jbk_A CLPB protein; beta barr 98.7 2.5E-08 8.6E-13 95.2 8.3 152 55-223 21-194 (195)
164 3pfi_A Holliday junction ATP-d 98.7 2.8E-06 9.5E-11 89.0 23.6 261 55-357 28-325 (338)
165 3h4m_A Proteasome-activating n 98.6 6E-07 2.1E-11 91.6 15.6 177 56-259 17-230 (285)
166 3bos_A Putative DNA replicatio 98.6 2.7E-08 9.3E-13 98.9 4.4 173 55-260 27-217 (242)
167 1d2n_A N-ethylmaleimide-sensit 98.5 2.7E-06 9.1E-11 86.0 18.4 196 56-282 33-264 (272)
168 1sxj_A Activator 1 95 kDa subu 98.5 4.3E-07 1.5E-11 100.6 12.4 188 55-260 38-253 (516)
169 3un9_A NLR family member X1; l 98.5 4E-08 1.4E-12 104.1 3.8 156 393-553 73-252 (372)
170 3pvs_A Replication-associated 98.5 1.6E-06 5.5E-11 93.6 16.2 177 54-259 24-214 (447)
171 1sxj_D Activator 1 41 kDa subu 98.5 2.1E-07 7.2E-12 98.3 9.1 193 55-259 36-234 (353)
172 4fdw_A Leucine rich hypothetic 98.5 3.5E-06 1.2E-10 90.1 18.5 142 393-549 136-280 (401)
173 2qz4_A Paraplegin; AAA+, SPG7, 98.5 2.6E-06 8.8E-11 85.6 15.6 180 56-260 6-222 (262)
174 2z4s_A Chromosomal replication 98.5 3.8E-07 1.3E-11 98.7 9.9 182 56-258 105-304 (440)
175 1xwi_A SKD1 protein; VPS4B, AA 98.4 1.2E-05 4.2E-10 83.0 20.7 181 56-261 12-224 (322)
176 3uk6_A RUVB-like 2; hexameric 98.4 8.4E-07 2.9E-11 94.2 12.2 197 55-259 43-302 (368)
177 3d8b_A Fidgetin-like protein 1 98.4 6E-06 2.1E-10 86.8 18.5 180 56-262 84-297 (357)
178 3eie_A Vacuolar protein sortin 98.4 5.9E-06 2E-10 85.7 17.0 179 56-261 18-229 (322)
179 3b9p_A CG5977-PA, isoform A; A 98.4 1.5E-05 5.1E-10 81.7 18.6 179 56-261 21-234 (297)
180 1sxj_E Activator 1 40 kDa subu 98.4 4.6E-07 1.6E-11 95.7 7.3 195 55-259 13-236 (354)
181 3syl_A Protein CBBX; photosynt 98.3 1.5E-06 5.1E-11 89.8 10.3 152 57-229 32-219 (309)
182 3vfd_A Spastin; ATPase, microt 98.3 1.3E-05 4.5E-10 85.4 17.9 181 56-262 115-328 (389)
183 3un9_A NLR family member X1; l 98.3 1.3E-07 4.4E-12 100.2 2.0 131 392-524 101-253 (372)
184 2qp9_X Vacuolar protein sortin 98.3 1.1E-05 3.6E-10 84.8 16.4 179 56-260 51-261 (355)
185 3u61_B DNA polymerase accessor 98.3 3.1E-06 1.1E-10 88.0 12.1 181 54-261 24-218 (324)
186 2p65_A Hypothetical protein PF 98.3 2.5E-06 8.7E-11 80.5 10.0 47 55-101 21-67 (187)
187 4fs7_A Uncharacterized protein 98.3 1.1E-05 3.6E-10 86.5 15.9 39 480-520 157-195 (394)
188 1l8q_A Chromosomal replication 98.2 4.1E-06 1.4E-10 87.1 11.3 174 56-255 11-203 (324)
189 1a5t_A Delta prime, HOLB; zinc 98.2 9.8E-06 3.4E-10 84.4 14.1 171 61-259 7-204 (334)
190 1sxj_C Activator 1 40 kDa subu 98.2 4.3E-06 1.5E-10 87.5 11.3 173 56-256 25-208 (340)
191 4b4t_J 26S protease regulatory 98.2 4.4E-05 1.5E-09 79.7 18.4 170 57-253 149-354 (405)
192 2zan_A Vacuolar protein sortin 98.2 3.5E-05 1.2E-09 83.4 18.5 181 56-261 134-346 (444)
193 3cf0_A Transitional endoplasmi 98.2 2.6E-05 8.7E-10 79.9 15.5 173 56-255 15-223 (301)
194 3pxg_A Negative regulator of g 98.2 1.1E-05 3.8E-10 88.0 13.3 151 55-229 179-340 (468)
195 4b4t_I 26S protease regulatory 98.1 0.00013 4.5E-09 76.4 19.4 170 57-253 183-388 (437)
196 4b4t_L 26S protease subunit RP 98.1 7.9E-05 2.7E-09 79.2 18.1 170 57-253 182-387 (437)
197 4b4t_M 26S protease regulatory 98.1 4.7E-05 1.6E-09 80.8 15.9 170 57-253 182-387 (434)
198 4b4t_H 26S protease regulatory 98.1 0.00013 4.3E-09 77.3 18.0 170 57-253 210-415 (467)
199 4gt6_A Cell surface protein; l 98.0 0.00017 5.7E-09 77.1 18.3 99 416-518 66-168 (394)
200 1qvr_A CLPB protein; coiled co 98.0 1.2E-05 4.1E-10 94.8 9.7 156 55-227 169-345 (854)
201 2r62_A Cell division protease 98.0 1.2E-05 4E-10 81.1 7.9 173 55-254 10-219 (268)
202 4b4t_K 26S protease regulatory 97.9 0.00034 1.2E-08 74.2 19.0 170 57-253 173-379 (428)
203 2gno_A DNA polymerase III, gam 97.9 1.9E-05 6.3E-10 80.6 9.1 147 60-227 1-152 (305)
204 3n70_A Transport activator; si 97.9 8.2E-06 2.8E-10 73.5 5.0 45 57-101 2-48 (145)
205 1lv7_A FTSH; alpha/beta domain 97.9 0.00017 5.8E-09 71.9 15.2 177 56-259 12-224 (257)
206 3hu3_A Transitional endoplasmi 97.9 6.7E-05 2.3E-09 81.8 12.9 177 56-259 204-414 (489)
207 3e4g_A ATP synthase subunit S, 97.9 1.3E-05 4.5E-10 73.6 6.2 38 414-451 61-98 (176)
208 3pxi_A Negative regulator of g 97.9 7.7E-05 2.6E-09 86.9 13.9 151 55-229 179-340 (758)
209 2ra8_A Uncharacterized protein 97.9 1.2E-05 4.1E-10 84.2 5.9 20 208-227 37-57 (362)
210 3rw6_A Nuclear RNA export fact 97.8 4.2E-06 1.4E-10 83.1 1.8 59 436-496 168-231 (267)
211 1io0_A Tropomodulin; LRR prote 97.8 1.3E-05 4.5E-10 75.5 4.9 110 410-522 32-163 (185)
212 2ce7_A Cell division protein F 97.8 0.00027 9.2E-09 76.3 15.5 171 56-253 16-221 (476)
213 3e4g_A ATP synthase subunit S, 97.8 1.9E-05 6.4E-10 72.6 5.5 88 438-525 61-154 (176)
214 1r6b_X CLPA protein; AAA+, N-t 97.8 0.00015 5E-09 84.7 14.2 156 55-227 185-362 (758)
215 2c9o_A RUVB-like 1; hexameric 97.7 0.00013 4.5E-09 79.3 12.0 46 56-101 37-87 (456)
216 2ra8_A Uncharacterized protein 97.7 1.1E-05 3.9E-10 84.4 3.2 13 484-496 251-263 (362)
217 1ofh_A ATP-dependent HSL prote 97.7 0.00013 4.6E-09 74.9 11.2 46 56-101 15-74 (310)
218 1in4_A RUVB, holliday junction 97.7 0.0036 1.2E-07 64.8 21.7 193 54-280 23-251 (334)
219 2w58_A DNAI, primosome compone 97.7 0.00012 3.9E-09 70.1 9.5 59 55-116 24-90 (202)
220 1io0_A Tropomodulin; LRR prote 97.7 7.1E-05 2.4E-09 70.5 7.2 119 431-553 29-164 (185)
221 3rw6_A Nuclear RNA export fact 97.6 8.3E-05 2.9E-09 73.7 7.3 78 412-491 168-257 (267)
222 3ec2_A DNA replication protein 97.5 0.00013 4.5E-09 68.3 7.4 46 56-101 10-62 (180)
223 4fcw_A Chaperone protein CLPB; 97.5 0.00016 5.5E-09 74.4 7.8 60 56-118 17-85 (311)
224 3cf2_A TER ATPase, transitiona 97.5 0.00068 2.3E-08 77.6 13.4 170 57-253 205-407 (806)
225 4fs7_A Uncharacterized protein 97.4 0.0017 5.8E-08 69.2 15.0 103 410-518 158-261 (394)
226 2x8a_A Nuclear valosin-contain 97.4 0.0024 8.3E-08 63.9 14.5 149 56-228 10-192 (274)
227 1ixz_A ATP-dependent metallopr 97.4 0.0015 5E-08 64.9 12.9 170 56-253 16-221 (254)
228 4h09_A Hypothetical leucine ri 97.4 0.0077 2.6E-07 63.6 19.2 120 392-519 46-167 (379)
229 3t15_A Ribulose bisphosphate c 97.4 0.0015 5.1E-08 66.3 12.9 26 76-101 35-60 (293)
230 1iy2_A ATP-dependent metallopr 97.3 0.0013 4.5E-08 66.3 12.3 170 56-253 40-245 (278)
231 3m6a_A ATP-dependent protease 97.3 0.0021 7.3E-08 71.1 14.3 156 57-227 82-266 (543)
232 3pxi_A Negative regulator of g 97.2 0.00013 4.3E-09 85.0 3.8 145 56-227 491-675 (758)
233 1ypw_A Transitional endoplasmi 97.2 0.0011 3.9E-08 77.0 11.3 170 56-253 204-407 (806)
234 3co5_A Putative two-component 97.2 0.00027 9.4E-09 63.2 4.7 45 57-101 5-51 (143)
235 2dhr_A FTSH; AAA+ protein, hex 97.2 0.0033 1.1E-07 68.3 13.8 167 56-253 31-236 (499)
236 4gt6_A Cell surface protein; l 97.1 0.0099 3.4E-07 63.2 16.9 120 393-519 65-191 (394)
237 1n0w_A DNA repair protein RAD5 96.9 0.0037 1.3E-07 61.4 10.7 93 76-170 23-130 (243)
238 2cvh_A DNA repair and recombin 96.8 0.0031 1E-07 60.9 9.0 88 76-170 19-116 (220)
239 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00066 2.3E-08 68.3 4.0 71 77-170 123-193 (331)
240 3hr8_A Protein RECA; alpha and 96.8 0.0029 9.9E-08 65.4 8.9 88 76-171 60-151 (356)
241 2kjq_A DNAA-related protein; s 96.7 0.0013 4.5E-08 59.1 4.5 53 59-117 21-73 (149)
242 3dm5_A SRP54, signal recogniti 96.6 0.0076 2.6E-07 63.9 10.6 26 76-101 99-124 (443)
243 2z43_A DNA repair and recombin 96.6 0.0077 2.6E-07 62.0 10.5 92 76-169 106-213 (324)
244 3io5_A Recombination and repai 96.6 0.0063 2.1E-07 61.0 9.1 87 79-171 30-123 (333)
245 4h09_A Hypothetical leucine ri 96.6 0.0089 3E-07 63.1 11.1 104 410-518 236-341 (379)
246 2zr9_A Protein RECA, recombina 96.6 0.0057 1.9E-07 63.4 9.2 87 76-170 60-150 (349)
247 1v5w_A DMC1, meiotic recombina 96.5 0.012 4.2E-07 60.9 11.6 92 76-169 121-229 (343)
248 2qgz_A Helicase loader, putati 96.5 0.0016 5.6E-08 66.4 4.8 46 56-101 124-176 (308)
249 1r6b_X CLPA protein; AAA+, N-t 96.5 0.0021 7.1E-08 74.9 6.2 46 56-101 458-512 (758)
250 1u94_A RECA protein, recombina 96.5 0.0055 1.9E-07 63.6 8.7 87 76-170 62-152 (356)
251 2b8t_A Thymidine kinase; deoxy 96.5 0.00074 2.5E-08 64.9 1.8 113 77-198 12-127 (223)
252 1xp8_A RECA protein, recombina 96.5 0.0068 2.3E-07 63.1 9.2 87 76-170 73-163 (366)
253 3cf2_A TER ATPase, transitiona 96.4 0.012 4.1E-07 67.4 11.2 170 56-252 477-682 (806)
254 1g5t_A COB(I)alamin adenosyltr 96.3 0.003 1E-07 58.7 4.6 117 78-198 29-164 (196)
255 2bjv_A PSP operon transcriptio 96.3 0.0042 1.4E-07 61.9 6.0 46 56-101 6-53 (265)
256 2i1q_A DNA repair and recombin 96.2 0.014 4.6E-07 60.1 9.7 93 76-169 97-214 (322)
257 3kl4_A SRP54, signal recogniti 96.2 0.02 6.7E-07 60.8 10.9 90 77-169 97-189 (433)
258 1qvr_A CLPB protein; coiled co 96.2 0.0025 8.6E-08 75.0 4.4 45 57-101 559-612 (854)
259 2xxa_A Signal recognition part 96.2 0.023 7.8E-07 60.6 11.0 105 62-168 76-192 (433)
260 4a74_A DNA repair and recombin 96.1 0.028 9.5E-07 54.4 10.9 58 77-135 25-85 (231)
261 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.016 5.4E-07 56.3 8.7 39 77-118 23-61 (235)
262 1j8m_F SRP54, signal recogniti 96.0 0.025 8.6E-07 57.0 10.3 90 77-169 98-190 (297)
263 3ice_A Transcription terminati 96.0 0.005 1.7E-07 63.3 4.9 97 68-171 164-273 (422)
264 3lda_A DNA repair protein RAD5 96.0 0.029 1E-06 59.0 11.0 93 76-169 177-283 (400)
265 1rz3_A Hypothetical protein rb 96.0 0.0065 2.2E-07 57.7 5.5 42 60-101 2-46 (201)
266 1ojl_A Transcriptional regulat 96.0 0.0083 2.8E-07 61.1 6.3 46 56-101 2-49 (304)
267 1jr3_D DNA polymerase III, del 95.9 0.018 6E-07 59.9 8.8 164 68-258 9-183 (343)
268 2ffh_A Protein (FFH); SRP54, s 95.9 0.043 1.5E-06 58.0 11.6 89 77-168 98-189 (425)
269 1pzn_A RAD51, DNA repair and r 95.9 0.024 8.3E-07 58.7 9.4 93 76-170 130-242 (349)
270 2px0_A Flagellar biosynthesis 95.8 0.02 6.8E-07 57.8 8.4 86 76-167 104-190 (296)
271 3e70_C DPA, signal recognition 95.8 0.046 1.6E-06 55.9 11.1 57 76-135 128-185 (328)
272 1qhx_A CPT, protein (chloramph 95.8 0.0058 2E-07 56.6 3.8 24 78-101 4-27 (178)
273 1vma_A Cell division protein F 95.7 0.033 1.1E-06 56.4 9.5 105 62-169 81-196 (306)
274 2r44_A Uncharacterized protein 95.7 0.0076 2.6E-07 62.3 5.0 44 56-101 27-70 (331)
275 1sky_E F1-ATPase, F1-ATP synth 95.7 0.027 9.2E-07 59.9 8.8 52 78-131 152-204 (473)
276 2ck3_D ATP synthase subunit be 95.7 0.069 2.4E-06 56.6 11.8 64 68-133 143-208 (482)
277 3c8u_A Fructokinase; YP_612366 95.6 0.0095 3.2E-07 56.9 4.8 39 63-101 6-46 (208)
278 3bh0_A DNAB-like replicative h 95.6 0.043 1.5E-06 56.1 9.9 52 76-132 67-118 (315)
279 3nbx_X ATPase RAVA; AAA+ ATPas 95.5 0.01 3.6E-07 64.4 5.3 44 56-101 22-65 (500)
280 3kb2_A SPBC2 prophage-derived 95.5 0.0069 2.3E-07 55.7 3.4 24 78-101 2-25 (173)
281 3hws_A ATP-dependent CLP prote 95.5 0.016 5.5E-07 60.7 6.3 45 57-101 16-75 (363)
282 2p5t_B PEZT; postsegregational 95.4 0.012 4.2E-07 58.0 4.9 26 76-101 31-56 (253)
283 2orw_A Thymidine kinase; TMTK, 95.4 0.00078 2.7E-08 63.0 -3.6 24 78-101 4-27 (184)
284 3vaa_A Shikimate kinase, SK; s 95.3 0.0094 3.2E-07 56.4 3.7 26 76-101 24-49 (199)
285 2dr3_A UPF0273 protein PH0284; 95.3 0.032 1.1E-06 54.6 7.7 39 77-118 23-61 (247)
286 1ex7_A Guanylate kinase; subst 95.3 0.0074 2.5E-07 56.1 2.8 24 78-101 2-25 (186)
287 3trf_A Shikimate kinase, SK; a 95.3 0.0095 3.2E-07 55.6 3.5 25 77-101 5-29 (185)
288 3sr0_A Adenylate kinase; phosp 95.3 0.036 1.2E-06 52.5 7.6 23 79-101 2-24 (206)
289 1g8p_A Magnesium-chelatase 38 95.3 0.0077 2.6E-07 62.8 3.1 46 56-101 24-69 (350)
290 1um8_A ATP-dependent CLP prote 95.3 0.021 7.2E-07 60.1 6.5 46 56-101 21-96 (376)
291 3lw7_A Adenylate kinase relate 95.3 0.0096 3.3E-07 54.9 3.4 23 78-101 2-24 (179)
292 2hf9_A Probable hydrogenase ni 95.2 0.016 5.5E-07 56.0 5.1 40 62-101 23-62 (226)
293 1kgd_A CASK, peripheral plasma 95.2 0.011 3.7E-07 55.0 3.6 24 78-101 6-29 (180)
294 3umf_A Adenylate kinase; rossm 95.2 0.059 2E-06 51.4 8.8 27 75-101 27-53 (217)
295 4a1f_A DNAB helicase, replicat 95.2 0.12 4.2E-06 52.8 11.6 51 77-132 46-96 (338)
296 2j37_W Signal recognition part 95.2 0.11 3.9E-06 56.1 11.9 26 76-101 100-125 (504)
297 1kag_A SKI, shikimate kinase I 95.1 0.0096 3.3E-07 54.8 3.0 24 78-101 5-28 (173)
298 3uie_A Adenylyl-sulfate kinase 95.1 0.012 4.1E-07 55.7 3.8 27 75-101 23-49 (200)
299 2z0h_A DTMP kinase, thymidylat 95.1 0.043 1.5E-06 51.6 7.6 23 79-101 2-24 (197)
300 4eun_A Thermoresistant glucoki 95.1 0.012 4.1E-07 55.8 3.7 27 75-101 27-53 (200)
301 1ly1_A Polynucleotide kinase; 95.1 0.012 4E-07 54.6 3.6 23 78-100 3-25 (181)
302 2yvu_A Probable adenylyl-sulfa 95.1 0.013 4.4E-07 54.7 3.7 26 76-101 12-37 (186)
303 1zp6_A Hypothetical protein AT 95.1 0.013 4.4E-07 55.0 3.7 25 77-101 9-33 (191)
304 3t61_A Gluconokinase; PSI-biol 95.0 0.011 3.6E-07 56.2 3.0 25 77-101 18-42 (202)
305 2rhm_A Putative kinase; P-loop 95.0 0.014 4.7E-07 54.8 3.7 25 77-101 5-29 (193)
306 2ga8_A Hypothetical 39.9 kDa p 95.0 0.025 8.5E-07 57.9 5.6 43 59-101 2-48 (359)
307 1nks_A Adenylate kinase; therm 94.9 0.013 4.5E-07 55.0 3.4 24 78-101 2-25 (194)
308 3tau_A Guanylate kinase, GMP k 94.9 0.016 5.4E-07 55.3 3.9 26 76-101 7-32 (208)
309 3iij_A Coilin-interacting nucl 94.9 0.013 4.4E-07 54.4 3.1 25 77-101 11-35 (180)
310 1ls1_A Signal recognition part 94.9 0.074 2.5E-06 53.6 9.0 89 77-168 98-189 (295)
311 2wsm_A Hydrogenase expression/ 94.9 0.019 6.4E-07 55.3 4.5 41 61-101 14-54 (221)
312 1kht_A Adenylate kinase; phosp 94.9 0.014 4.8E-07 54.6 3.5 24 78-101 4-27 (192)
313 2qor_A Guanylate kinase; phosp 94.9 0.013 4.5E-07 55.6 3.3 26 76-101 11-36 (204)
314 1tue_A Replication protein E1; 94.8 0.025 8.6E-07 52.8 4.8 43 59-101 39-82 (212)
315 2plr_A DTMP kinase, probable t 94.8 0.035 1.2E-06 52.9 6.2 24 78-101 5-28 (213)
316 1odf_A YGR205W, hypothetical 3 94.8 0.025 8.7E-07 56.8 5.1 27 75-101 29-55 (290)
317 2ze6_A Isopentenyl transferase 94.8 0.015 5.3E-07 57.3 3.4 24 78-101 2-25 (253)
318 1via_A Shikimate kinase; struc 94.7 0.014 4.7E-07 53.9 2.9 23 79-101 6-28 (175)
319 1fx0_B ATP synthase beta chain 94.7 0.1 3.6E-06 55.5 9.8 101 68-170 155-277 (498)
320 2c95_A Adenylate kinase 1; tra 94.7 0.018 6.1E-07 54.2 3.6 26 76-101 8-33 (196)
321 1y63_A LMAJ004144AAA protein; 94.7 0.021 7.1E-07 53.2 3.9 24 77-100 10-33 (184)
322 3cmu_A Protein RECA, recombina 94.7 0.054 1.9E-06 67.7 8.5 87 75-169 1425-1515(2050)
323 3hjn_A DTMP kinase, thymidylat 94.7 0.069 2.4E-06 50.2 7.6 51 79-132 2-52 (197)
324 1g41_A Heat shock protein HSLU 94.6 0.028 9.5E-07 59.7 5.3 46 56-101 15-74 (444)
325 1ukz_A Uridylate kinase; trans 94.6 0.021 7.1E-07 54.2 3.9 26 76-101 14-39 (203)
326 1zuh_A Shikimate kinase; alpha 94.6 0.018 6.2E-07 52.7 3.4 25 77-101 7-31 (168)
327 1gvn_B Zeta; postsegregational 94.6 0.028 9.5E-07 56.5 5.1 26 76-101 32-57 (287)
328 3ney_A 55 kDa erythrocyte memb 94.6 0.021 7.2E-07 53.5 3.8 26 76-101 18-43 (197)
329 1tev_A UMP-CMP kinase; ploop, 94.6 0.019 6.4E-07 54.0 3.5 25 77-101 3-27 (196)
330 3a00_A Guanylate kinase, GMP k 94.6 0.016 5.6E-07 54.0 3.1 24 78-101 2-25 (186)
331 1zu4_A FTSY; GTPase, signal re 94.6 0.098 3.4E-06 53.3 9.1 25 77-101 105-129 (320)
332 1cr0_A DNA primase/helicase; R 94.6 0.12 4.1E-06 52.2 9.8 53 76-132 34-86 (296)
333 2jaq_A Deoxyguanosine kinase; 94.6 0.018 6.2E-07 54.5 3.5 23 79-101 2-24 (205)
334 1knq_A Gluconate kinase; ALFA/ 94.6 0.02 6.7E-07 52.8 3.6 25 77-101 8-32 (175)
335 2iyv_A Shikimate kinase, SK; t 94.6 0.014 5E-07 54.3 2.7 24 78-101 3-26 (184)
336 3tr0_A Guanylate kinase, GMP k 94.6 0.022 7.4E-07 54.1 3.9 25 77-101 7-31 (205)
337 3tqc_A Pantothenate kinase; bi 94.6 0.12 4.2E-06 52.4 9.6 26 76-101 91-116 (321)
338 3rfe_A Platelet glycoprotein I 94.5 0.055 1.9E-06 47.0 6.0 13 465-477 34-46 (130)
339 2bwj_A Adenylate kinase 5; pho 94.5 0.02 6.8E-07 54.0 3.5 25 77-101 12-36 (199)
340 3tlx_A Adenylate kinase 2; str 94.5 0.036 1.2E-06 54.2 5.3 42 60-101 10-53 (243)
341 1e6c_A Shikimate kinase; phosp 94.4 0.018 6.1E-07 53.0 2.9 24 78-101 3-26 (173)
342 2j41_A Guanylate kinase; GMP, 94.4 0.025 8.5E-07 53.7 3.9 25 77-101 6-30 (207)
343 1cke_A CK, MSSA, protein (cyti 94.4 0.021 7.1E-07 55.2 3.4 24 78-101 6-29 (227)
344 1pgv_A TMD-1, tropomodulin TMD 94.4 0.078 2.7E-06 49.4 7.1 64 411-475 38-111 (197)
345 3l0o_A Transcription terminati 94.4 0.019 6.6E-07 58.9 3.2 52 67-119 164-216 (427)
346 2bdt_A BH3686; alpha-beta prot 94.4 0.023 7.7E-07 53.2 3.5 24 78-101 3-26 (189)
347 2vli_A Antibiotic resistance p 94.4 0.016 5.5E-07 53.8 2.5 25 77-101 5-29 (183)
348 3cm0_A Adenylate kinase; ATP-b 94.4 0.022 7.6E-07 53.0 3.4 24 78-101 5-28 (186)
349 1uf9_A TT1252 protein; P-loop, 94.4 0.026 8.7E-07 53.4 3.9 26 75-100 6-31 (203)
350 1ye8_A Protein THEP1, hypothet 94.3 0.025 8.4E-07 52.3 3.5 23 79-101 2-24 (178)
351 1ypw_A Transitional endoplasmi 94.3 0.0059 2E-07 70.9 -0.9 46 56-101 477-535 (806)
352 3asz_A Uridine kinase; cytidin 94.3 0.025 8.6E-07 54.0 3.7 26 76-101 5-30 (211)
353 2cdn_A Adenylate kinase; phosp 94.3 0.026 8.9E-07 53.4 3.8 26 76-101 19-44 (201)
354 2yhs_A FTSY, cell division pro 94.3 0.12 4.1E-06 55.4 9.1 26 76-101 292-317 (503)
355 1lvg_A Guanylate kinase, GMP k 94.3 0.02 7E-07 54.0 2.9 24 78-101 5-28 (198)
356 3a4m_A L-seryl-tRNA(SEC) kinas 94.3 0.026 8.8E-07 56.0 3.8 25 77-101 4-28 (260)
357 3rfe_A Platelet glycoprotein I 94.2 0.058 2E-06 46.8 5.6 34 415-448 32-65 (130)
358 2pt5_A Shikimate kinase, SK; a 94.2 0.025 8.6E-07 51.6 3.4 23 79-101 2-24 (168)
359 2qt1_A Nicotinamide riboside k 94.2 0.028 9.4E-07 53.5 3.8 26 76-101 20-45 (207)
360 2if2_A Dephospho-COA kinase; a 94.2 0.024 8.3E-07 53.7 3.4 23 78-101 2-24 (204)
361 1qf9_A UMP/CMP kinase, protein 94.2 0.025 8.6E-07 52.9 3.5 25 77-101 6-30 (194)
362 2wwf_A Thymidilate kinase, put 94.2 0.027 9.1E-07 53.8 3.7 25 77-101 10-34 (212)
363 3fwy_A Light-independent proto 94.2 0.026 8.8E-07 57.5 3.7 41 75-118 46-86 (314)
364 1uj2_A Uridine-cytidine kinase 94.2 0.028 9.6E-07 55.4 3.8 27 75-101 20-46 (252)
365 2bbw_A Adenylate kinase 4, AK4 94.2 0.027 9.2E-07 55.3 3.7 25 77-101 27-51 (246)
366 1nn5_A Similar to deoxythymidy 94.2 0.029 9.8E-07 53.6 3.8 25 77-101 9-33 (215)
367 1zd8_A GTP:AMP phosphotransfer 94.2 0.027 9.3E-07 54.5 3.6 25 77-101 7-31 (227)
368 1xjc_A MOBB protein homolog; s 94.1 0.029 1E-06 51.0 3.5 26 76-101 3-28 (169)
369 1jjv_A Dephospho-COA kinase; P 94.1 0.026 9E-07 53.6 3.4 22 78-99 3-24 (206)
370 2pbr_A DTMP kinase, thymidylat 94.1 0.027 9.3E-07 52.8 3.4 23 79-101 2-24 (195)
371 2grj_A Dephospho-COA kinase; T 94.1 0.029 1E-06 52.5 3.6 24 78-101 13-36 (192)
372 4akg_A Glutathione S-transfera 94.1 0.2 6.8E-06 65.0 12.0 198 78-320 1268-1507(2695)
373 3k1j_A LON protease, ATP-depen 94.1 0.05 1.7E-06 61.1 6.0 45 55-101 40-84 (604)
374 1zak_A Adenylate kinase; ATP:A 94.0 0.026 8.9E-07 54.4 3.2 26 76-101 4-29 (222)
375 2r6a_A DNAB helicase, replicat 94.0 0.29 9.8E-06 52.7 11.8 51 76-130 202-252 (454)
376 3fb4_A Adenylate kinase; psych 94.0 0.028 9.6E-07 53.8 3.4 23 79-101 2-24 (216)
377 2v54_A DTMP kinase, thymidylat 94.0 0.033 1.1E-06 52.7 3.8 25 77-101 4-28 (204)
378 3dl0_A Adenylate kinase; phosp 94.0 0.03 1E-06 53.6 3.6 23 79-101 2-24 (216)
379 4e22_A Cytidylate kinase; P-lo 94.0 0.03 1E-06 55.2 3.6 25 77-101 27-51 (252)
380 4gp7_A Metallophosphoesterase; 94.0 0.025 8.6E-07 51.9 2.9 22 77-98 9-30 (171)
381 1aky_A Adenylate kinase; ATP:A 94.0 0.032 1.1E-06 53.7 3.7 25 77-101 4-28 (220)
382 1znw_A Guanylate kinase, GMP k 93.9 0.033 1.1E-06 52.9 3.5 25 77-101 20-44 (207)
383 2q6t_A DNAB replication FORK h 93.8 0.24 8E-06 53.3 10.5 51 77-131 200-250 (444)
384 1z6g_A Guanylate kinase; struc 93.7 0.032 1.1E-06 53.5 3.2 25 77-101 23-47 (218)
385 1q57_A DNA primase/helicase; d 93.7 0.19 6.4E-06 55.1 9.7 52 77-132 242-293 (503)
386 2qe7_A ATP synthase subunit al 93.7 0.14 4.9E-06 54.5 8.2 98 68-170 152-265 (502)
387 1s96_A Guanylate kinase, GMP k 93.7 0.042 1.4E-06 52.7 3.8 26 76-101 15-40 (219)
388 1htw_A HI0065; nucleotide-bind 93.6 0.041 1.4E-06 49.6 3.5 27 75-101 31-57 (158)
389 1m7g_A Adenylylsulfate kinase; 93.6 0.059 2E-06 51.4 4.9 27 75-101 23-49 (211)
390 2jeo_A Uridine-cytidine kinase 93.6 0.042 1.4E-06 53.8 3.9 26 76-101 24-49 (245)
391 1gtv_A TMK, thymidylate kinase 93.6 0.021 7.1E-07 54.6 1.6 23 79-101 2-24 (214)
392 3cmu_A Protein RECA, recombina 93.6 0.12 4E-06 64.8 8.4 96 67-170 370-472 (2050)
393 3end_A Light-independent proto 93.6 0.053 1.8E-06 55.2 4.7 44 73-119 37-80 (307)
394 3aez_A Pantothenate kinase; tr 93.6 0.043 1.5E-06 55.8 3.9 27 75-101 88-114 (312)
395 1rj9_A FTSY, signal recognitio 93.5 0.046 1.6E-06 55.3 4.0 26 76-101 101-126 (304)
396 3iqw_A Tail-anchored protein t 93.5 0.094 3.2E-06 53.8 6.4 53 70-125 9-61 (334)
397 3a8t_A Adenylate isopentenyltr 93.5 0.044 1.5E-06 55.7 3.7 25 77-101 40-64 (339)
398 3exa_A TRNA delta(2)-isopenten 93.5 0.046 1.6E-06 54.8 3.8 25 77-101 3-27 (322)
399 3r20_A Cytidylate kinase; stru 93.5 0.042 1.4E-06 53.0 3.4 25 77-101 9-33 (233)
400 2r9v_A ATP synthase subunit al 93.5 0.13 4.3E-06 55.0 7.3 98 68-170 165-278 (515)
401 3d3q_A TRNA delta(2)-isopenten 93.4 0.043 1.5E-06 56.0 3.6 24 78-101 8-31 (340)
402 2pez_A Bifunctional 3'-phospho 93.3 0.051 1.7E-06 50.2 3.7 25 77-101 5-29 (179)
403 3io3_A DEHA2D07832P; chaperone 93.3 0.087 3E-06 54.3 5.8 54 70-124 11-64 (348)
404 1vht_A Dephospho-COA kinase; s 93.3 0.052 1.8E-06 52.0 3.9 23 77-99 4-26 (218)
405 3nwj_A ATSK2; P loop, shikimat 93.3 0.038 1.3E-06 54.1 2.9 25 77-101 48-72 (250)
406 2f6r_A COA synthase, bifunctio 93.3 0.048 1.6E-06 54.6 3.7 24 76-99 74-97 (281)
407 2v3c_C SRP54, signal recogniti 93.3 0.032 1.1E-06 59.5 2.4 25 77-101 99-123 (432)
408 3tif_A Uncharacterized ABC tra 93.2 0.064 2.2E-06 52.0 4.4 35 76-114 30-64 (235)
409 3crm_A TRNA delta(2)-isopenten 93.2 0.048 1.7E-06 55.2 3.6 24 78-101 6-29 (323)
410 4eaq_A DTMP kinase, thymidylat 93.2 0.093 3.2E-06 50.7 5.5 26 76-101 25-50 (229)
411 3cmw_A Protein RECA, recombina 93.2 0.12 4.2E-06 63.8 7.7 87 76-170 382-472 (1706)
412 2onk_A Molybdate/tungstate ABC 93.2 0.085 2.9E-06 51.3 5.2 26 75-101 23-48 (240)
413 3oaa_A ATP synthase subunit al 93.2 0.29 9.9E-06 52.1 9.4 97 68-170 152-265 (513)
414 1np6_A Molybdopterin-guanine d 93.2 0.057 2E-06 49.5 3.7 25 77-101 6-30 (174)
415 1e4v_A Adenylate kinase; trans 93.1 0.049 1.7E-06 52.1 3.4 23 79-101 2-24 (214)
416 3vr4_D V-type sodium ATPase su 93.1 0.17 5.8E-06 53.4 7.6 93 78-170 152-259 (465)
417 3ake_A Cytidylate kinase; CMP 93.1 0.051 1.7E-06 51.6 3.4 24 78-101 3-26 (208)
418 3be4_A Adenylate kinase; malar 93.1 0.049 1.7E-06 52.2 3.4 24 78-101 6-29 (217)
419 2xb4_A Adenylate kinase; ATP-b 93.1 0.051 1.7E-06 52.3 3.4 23 79-101 2-24 (223)
420 1ak2_A Adenylate kinase isoenz 93.1 0.058 2E-06 52.3 3.8 25 77-101 16-40 (233)
421 1sq5_A Pantothenate kinase; P- 93.0 0.085 2.9E-06 53.6 5.2 27 75-101 78-104 (308)
422 3gqb_B V-type ATP synthase bet 93.0 0.13 4.3E-06 54.3 6.5 92 78-170 148-262 (464)
423 3foz_A TRNA delta(2)-isopenten 93.0 0.057 2E-06 54.0 3.7 26 76-101 9-34 (316)
424 2qmh_A HPR kinase/phosphorylas 93.0 0.048 1.6E-06 50.6 2.9 24 78-101 35-58 (205)
425 2f1r_A Molybdopterin-guanine d 93.0 0.036 1.2E-06 50.7 2.0 24 78-101 3-26 (171)
426 1g8f_A Sulfate adenylyltransfe 92.9 0.09 3.1E-06 56.9 5.4 45 57-101 373-419 (511)
427 3p32_A Probable GTPase RV1496/ 92.9 0.11 3.6E-06 54.1 5.8 37 65-101 65-103 (355)
428 2pcj_A ABC transporter, lipopr 92.9 0.077 2.6E-06 51.1 4.3 25 77-101 30-54 (224)
429 2i3b_A HCR-ntpase, human cance 92.9 0.05 1.7E-06 50.8 2.9 23 79-101 3-25 (189)
430 2c61_A A-type ATP synthase non 92.9 0.16 5.6E-06 53.8 7.1 101 69-169 143-259 (469)
431 3lnc_A Guanylate kinase, GMP k 92.8 0.038 1.3E-06 53.6 2.2 25 77-101 27-52 (231)
432 3v9p_A DTMP kinase, thymidylat 92.8 0.12 4.1E-06 49.6 5.6 25 77-101 25-49 (227)
433 3lv8_A DTMP kinase, thymidylat 92.8 0.14 4.7E-06 49.5 6.0 52 77-130 27-78 (236)
434 2ehv_A Hypothetical protein PH 92.8 0.058 2E-06 52.9 3.4 23 77-99 30-52 (251)
435 3gfo_A Cobalt import ATP-bindi 92.7 0.081 2.8E-06 52.6 4.4 25 77-101 34-58 (275)
436 1b0u_A Histidine permease; ABC 92.7 0.082 2.8E-06 52.2 4.4 26 76-101 31-56 (262)
437 4gzl_A RAS-related C3 botulinu 92.7 0.065 2.2E-06 50.7 3.5 42 60-101 13-54 (204)
438 4tmk_A Protein (thymidylate ki 92.6 0.14 4.7E-06 48.7 5.7 52 78-131 4-55 (213)
439 3b9q_A Chloroplast SRP recepto 92.6 0.07 2.4E-06 53.9 3.8 25 77-101 100-124 (302)
440 2og2_A Putative signal recogni 92.6 0.12 4.1E-06 53.4 5.5 25 77-101 157-181 (359)
441 1fx0_A ATP synthase alpha chai 92.5 0.13 4.4E-06 55.0 5.7 87 78-170 164-266 (507)
442 2r8r_A Sensor protein; KDPD, P 92.5 0.097 3.3E-06 49.8 4.3 38 78-118 7-44 (228)
443 2ck3_A ATP synthase subunit al 92.5 0.21 7.2E-06 53.4 7.3 103 68-170 152-273 (510)
444 2ff7_A Alpha-hemolysin translo 92.4 0.095 3.2E-06 51.2 4.4 25 77-101 35-59 (247)
445 4edh_A DTMP kinase, thymidylat 92.4 0.18 6.2E-06 47.9 6.2 32 78-111 7-38 (213)
446 1a7j_A Phosphoribulokinase; tr 92.4 0.037 1.3E-06 55.7 1.4 26 76-101 4-29 (290)
447 3cmw_A Protein RECA, recombina 92.4 0.18 6.2E-06 62.3 7.7 87 76-170 1430-1520(1706)
448 3zvl_A Bifunctional polynucleo 92.4 0.067 2.3E-06 56.9 3.5 27 75-101 256-282 (416)
449 2olj_A Amino acid ABC transpor 92.4 0.096 3.3E-06 51.7 4.4 26 76-101 49-74 (263)
450 1ji0_A ABC transporter; ATP bi 92.3 0.1 3.4E-06 50.9 4.4 25 77-101 32-56 (240)
451 1sgw_A Putative ABC transporte 92.3 0.087 3E-06 50.2 3.8 25 77-101 35-59 (214)
452 3bgw_A DNAB-like replicative h 92.3 0.29 9.9E-06 52.3 8.3 50 77-131 197-246 (444)
453 2pze_A Cystic fibrosis transme 92.2 0.1 3.6E-06 50.3 4.4 26 76-101 33-58 (229)
454 4g1u_C Hemin import ATP-bindin 92.2 0.092 3.1E-06 51.9 4.0 26 76-101 36-61 (266)
455 2ixe_A Antigen peptide transpo 92.2 0.1 3.6E-06 51.7 4.4 26 76-101 44-69 (271)
456 1g6h_A High-affinity branched- 92.2 0.11 3.6E-06 51.3 4.4 25 77-101 33-57 (257)
457 1pgv_A TMD-1, tropomodulin TMD 92.2 0.14 4.9E-06 47.6 5.0 117 434-551 37-168 (197)
458 1oix_A RAS-related protein RAB 92.2 0.082 2.8E-06 49.4 3.4 25 77-101 29-53 (191)
459 1vpl_A ABC transporter, ATP-bi 92.1 0.11 3.7E-06 51.1 4.4 26 76-101 40-65 (256)
460 3ld9_A DTMP kinase, thymidylat 92.1 0.14 4.8E-06 48.9 5.1 56 75-131 19-74 (223)
461 3b85_A Phosphate starvation-in 92.1 0.058 2E-06 51.2 2.3 23 78-100 23-45 (208)
462 3mfy_A V-type ATP synthase alp 92.1 0.45 1.5E-05 51.2 9.2 58 68-130 217-276 (588)
463 1ltq_A Polynucleotide kinase; 92.0 0.083 2.8E-06 53.5 3.6 24 78-101 3-26 (301)
464 2ged_A SR-beta, signal recogni 92.0 0.16 5.4E-06 47.3 5.3 26 76-101 47-72 (193)
465 1yrb_A ATP(GTP)binding protein 92.0 0.089 3.1E-06 52.0 3.7 26 76-101 13-38 (262)
466 3upu_A ATP-dependent DNA helic 92.0 0.19 6.4E-06 54.3 6.5 41 60-101 29-69 (459)
467 1u0j_A DNA replication protein 92.0 0.16 5.6E-06 49.6 5.4 37 65-101 90-128 (267)
468 2cbz_A Multidrug resistance-as 92.0 0.073 2.5E-06 51.7 2.9 26 76-101 30-55 (237)
469 4hlc_A DTMP kinase, thymidylat 91.9 0.25 8.5E-06 46.6 6.5 49 78-130 3-51 (205)
470 3llm_A ATP-dependent RNA helic 91.9 0.56 1.9E-05 45.3 9.3 102 66-170 67-187 (235)
471 2d2e_A SUFC protein; ABC-ATPas 91.8 0.09 3.1E-06 51.6 3.4 24 77-100 29-52 (250)
472 2ihy_A ABC transporter, ATP-bi 91.8 0.12 4.1E-06 51.5 4.4 26 76-101 46-71 (279)
473 2fz4_A DNA repair protein RAD2 91.8 1.5 5.3E-05 42.2 12.3 38 61-101 95-132 (237)
474 2yz2_A Putative ABC transporte 91.8 0.12 4.2E-06 51.1 4.4 26 76-101 32-57 (266)
475 2ocp_A DGK, deoxyguanosine kin 91.8 0.1 3.5E-06 50.8 3.8 25 77-101 2-26 (241)
476 1q3t_A Cytidylate kinase; nucl 91.8 0.11 3.7E-06 50.5 3.9 26 76-101 15-40 (236)
477 2wji_A Ferrous iron transport 91.7 0.094 3.2E-06 47.5 3.2 23 78-100 4-26 (165)
478 3f9v_A Minichromosome maintena 91.7 0.055 1.9E-06 60.4 1.9 46 56-101 295-351 (595)
479 2dyk_A GTP-binding protein; GT 91.7 0.11 3.6E-06 46.7 3.5 24 78-101 2-25 (161)
480 3eph_A TRNA isopentenyltransfe 91.7 0.091 3.1E-06 54.7 3.3 24 78-101 3-26 (409)
481 2zu0_C Probable ATP-dependent 91.6 0.095 3.2E-06 51.9 3.4 25 76-100 45-69 (267)
482 2v9p_A Replication protein E1; 91.6 0.11 3.8E-06 52.2 3.8 27 75-101 124-150 (305)
483 2f9l_A RAB11B, member RAS onco 91.6 0.1 3.6E-06 49.0 3.5 24 78-101 6-29 (199)
484 3vr4_A V-type sodium ATPase ca 91.6 0.52 1.8E-05 50.9 9.1 58 68-130 222-281 (600)
485 1nlf_A Regulatory protein REPA 91.5 0.098 3.3E-06 52.3 3.4 25 77-101 30-54 (279)
486 2zej_A Dardarin, leucine-rich 91.5 0.079 2.7E-06 49.1 2.4 22 79-100 4-25 (184)
487 3fvq_A Fe(3+) IONS import ATP- 91.4 0.16 5.5E-06 52.3 4.9 35 76-114 29-63 (359)
488 1mv5_A LMRA, multidrug resista 91.4 0.089 3E-06 51.3 2.9 26 76-101 27-52 (243)
489 2qi9_C Vitamin B12 import ATP- 91.4 0.12 3.9E-06 50.6 3.6 25 77-101 26-50 (249)
490 1svm_A Large T antigen; AAA+ f 91.4 0.12 4.1E-06 53.8 3.9 27 75-101 167-193 (377)
491 2eyu_A Twitching motility prot 91.4 0.12 4.2E-06 50.9 3.8 27 75-101 23-49 (261)
492 2ghi_A Transport protein; mult 91.2 0.095 3.3E-06 51.7 2.9 26 76-101 45-70 (260)
493 1cp2_A CP2, nitrogenase iron p 91.2 0.16 5.3E-06 50.4 4.5 38 78-118 2-39 (269)
494 3tqf_A HPR(Ser) kinase; transf 91.2 0.13 4.6E-06 46.3 3.5 23 78-100 17-39 (181)
495 3nh6_A ATP-binding cassette SU 91.2 0.12 4.1E-06 52.1 3.6 26 76-101 79-104 (306)
496 2ce2_X GTPase HRAS; signaling 91.1 0.11 3.9E-06 46.6 3.2 23 79-101 5-27 (166)
497 3cr8_A Sulfate adenylyltranfer 91.1 0.17 5.8E-06 55.6 5.0 42 60-101 350-393 (552)
498 1p9r_A General secretion pathw 91.1 0.34 1.2E-05 51.2 7.1 34 67-101 158-191 (418)
499 2wjg_A FEOB, ferrous iron tran 91.0 0.13 4.5E-06 47.6 3.5 23 78-100 8-30 (188)
500 1tq4_A IIGP1, interferon-induc 91.0 0.15 5.2E-06 53.7 4.3 26 76-101 68-93 (413)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=7.7e-42 Score=384.81 Aligned_cols=291 Identities=14% Similarity=0.148 Sum_probs=230.5
Q ss_pred CCchHHHHHHHHHhccC---CccEEEEEcCCCCcHHHHHHHHHh--hccCCCCCCcEEEEEEeCccc--cHHHHHHHHHH
Q 046742 59 LGLESTFDEVWRCLGEE---HVGIIGLYGMGEVGKTTLLTRINN--KFSNTPNGFDFVIWVVLSRDL--QIDRLQENIAR 131 (769)
Q Consensus 59 vGr~~~~~~l~~~L~~~---~~~vv~I~G~gGiGKTtLa~~~~~--~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~ 131 (769)
|||++++++|.++|..+ ..++|+|+||||+||||||+++|+ +. +++.+|+.++||+++... +...++.+|++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 59999999999999643 678999999999999999999998 34 557899999999999875 78999999999
Q ss_pred HhCCCCc-----ccccccHHHHHHHHHHHHccC-CEEEEEecccCcccccccCCCCCCCCCCcEEEEeeccCCcccccc-
Q 046742 132 KIGLYDQ-----SWKNKRLEIKAADIFKILSRK-KFVLLLDDIWNRVDLEKLGIPPMNTNGSSKIVFTTRSAGGCGLME- 204 (769)
Q Consensus 132 ~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~iivTtR~~~v~~~~~- 204 (769)
+++.... .....+.+.....+++.++++ |+||||||||+..++ .+ + ..+||+||||||+..++..+.
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~-~~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A-QELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H-HHTTCEEEEEESBGGGGGGCCS
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----c-ccCCCEEEEEcCCHHHHHHcCC
Confidence 9976421 112335677789999999996 999999999997654 22 1 126899999999999987665
Q ss_pred ccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHHHhcCCCChhHHHHHHHHHHhc--
Q 046742 205 AHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGRAMAFKKTPQEWKDAIQVLRRS-- 282 (769)
Q Consensus 205 ~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~-- 282 (769)
....|+|++|+.++||+||.+.++... .++...+++++|+++|+|+||||+++|+.++.+ + |+++ +.+...
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l~ 356 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKLE 356 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHHH
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHhh
Confidence 446799999999999999999987543 245678899999999999999999999999764 2 5443 333221
Q ss_pred -----------ccCCCChhh-hhhHHh-----------hhcCCCCCCccchhHHHHHHhhc--Cccccch------hHhH
Q 046742 283 -----------ASEFPGMDE-IKSCFL-----------YCCLFPEDCDISKIDLIDCWIGE--GFFDEYD------RGYT 331 (769)
Q Consensus 283 -----------~~~~~~~~~-~k~cfl-----------~~s~fp~~~~i~~~~li~~w~a~--g~~~~~~------~~~~ 331 (769)
..+++.++. +|.||+ |||+||+++.|+ ++.|+|+ ||+...+ .+.+
T Consensus 357 ~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~ 432 (549)
T 2a5y_B 357 SRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD 432 (549)
T ss_dssp HHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH
T ss_pred cccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH
Confidence 123444443 899999 999999999998 8899999 8886532 3445
Q ss_pred HHHHHHHhhccccc---CCCceEEhHHHHHHHHHHHhhh
Q 046742 332 IIGDLLRACLLEEV---NDNNVKLHDVIRDMGLWIASEV 367 (769)
Q Consensus 332 ~~~~L~~~sll~~~---~~~~~~mhdl~~~~~~~~~~~~ 367 (769)
++++|+++||++.. ...+|+|||++|++|+.++...
T Consensus 433 ~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 433 RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 99999999999875 3457999999999999877553
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=7.5e-36 Score=338.26 Aligned_cols=280 Identities=17% Similarity=0.209 Sum_probs=220.7
Q ss_pred CCCCchHHHHHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcE-EEEEEeCccccHHHHHHHHHHHhC
Q 046742 57 QTLGLESTFDEVWRCLGE-EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDF-VIWVVLSRDLQIDRLQENIARKIG 134 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~ 134 (769)
..|||++++++|.++|.+ ++.++|+|+||||+||||||++++++. ++..+|+. ++|++++..++...++..+++.++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 349999999999999976 567899999999999999999999875 44677885 999999998888888888877543
Q ss_pred CCC-----cc----cccccHHHHHHHHHHHH---ccCCEEEEEecccCcccccccCCCCCCCCCCcEEEEeeccCCcccc
Q 046742 135 LYD-----QS----WKNKRLEIKAADIFKIL---SRKKFVLLLDDIWNRVDLEKLGIPPMNTNGSSKIVFTTRSAGGCGL 202 (769)
Q Consensus 135 ~~~-----~~----~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~iivTtR~~~v~~~ 202 (769)
... .. ....+.+.....+++.+ .++|+||||||||+.+.|+.+. .||+||||||++.++..
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~ 280 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF 280 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHh
Confidence 211 00 01224556667777766 6799999999999988887652 68999999999988754
Q ss_pred ccccceEEcC------CCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHHHhcCC-CChhHHHH-
Q 046742 203 MEAHRIFKVK------CLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGRAMAFK-KTPQEWKD- 274 (769)
Q Consensus 203 ~~~~~~~~l~------~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~-~~~~~w~~- 274 (769)
+.....++++ +|+.+||++||.+..+.. ..++..+ .|+|+||||.++|++|+.+ .+.+.|+.
T Consensus 281 l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~ 350 (1221)
T 1vt4_I 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV 350 (1221)
T ss_dssp HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC
T ss_pred cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC
Confidence 4444456676 999999999999985432 1233333 3999999999999999876 36778864
Q ss_pred ----HHHHHHhcccCCCChhhh-hhHHhhhcCCCCCCccchhHHHHHHhhcCccccchhHhHHHHHHHHhhccccc-CCC
Q 046742 275 ----AIQVLRRSASEFPGMDEI-KSCFLYCCLFPEDCDISKIDLIDCWIGEGFFDEYDRGYTIIGDLLRACLLEEV-NDN 348 (769)
Q Consensus 275 ----~l~~l~~~~~~~~~~~~~-k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~L~~~sll~~~-~~~ 348 (769)
+...+..++..++.. . |+||++||+||+++.|+.+.++.+|+++| ...+..++++|+++||++.. ...
T Consensus 351 ~~~~I~aaLelSYd~Lp~e--elK~cFL~LAIFPed~~I~~elLa~LW~aeG----eedAe~~L~eLvdRSLLq~d~~~~ 424 (1221)
T 1vt4_I 351 NCDKLTTIIESSLNVLEPA--EYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----KSDVMVVVNKLHKYSLVEKQPKES 424 (1221)
T ss_dssp SCHHHHHHHHHHHHHSCTT--HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----SHHHHHHHHHHHTSSSSSBCSSSS
T ss_pred ChhHHHHHHHHHHHhCCHH--HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----HHHHHHHHHHHHhhCCEEEeCCCC
Confidence 444555566556543 6 99999999999999999999999999987 22577899999999999875 457
Q ss_pred ceEEhHHHHHHH
Q 046742 349 NVKLHDVIRDMG 360 (769)
Q Consensus 349 ~~~mhdl~~~~~ 360 (769)
.|+|||++++++
T Consensus 425 rYrMHDLllELr 436 (1221)
T 1vt4_I 425 TISIPSIYLELK 436 (1221)
T ss_dssp EEBCCCHHHHHH
T ss_pred EEEehHHHHHHh
Confidence 899999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-33 Score=352.35 Aligned_cols=297 Identities=19% Similarity=0.262 Sum_probs=236.1
Q ss_pred cCCCCCCCCchHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHhhccCCCC-CCcEEEEEEeCccc--cHHHHH
Q 046742 52 ERPIPQTLGLESTFDEVWRCLG--EEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPN-GFDFVIWVVLSRDL--QIDRLQ 126 (769)
Q Consensus 52 ~~~~~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~-~f~~~~wv~~~~~~--~~~~~~ 126 (769)
|++.+.||||++++++|.++|. +++.++|+|+||||+||||||++++++...... .++.++|++++... +....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 3455789999999999999995 357889999999999999999999998522233 55788899998843 455567
Q ss_pred HHHHHHhCCCCc--ccccccHHHHHHHHHHHHccC--CEEEEEecccCcccccccCCCCCCCCCCcEEEEeeccCCcccc
Q 046742 127 ENIARKIGLYDQ--SWKNKRLEIKAADIFKILSRK--KFVLLLDDIWNRVDLEKLGIPPMNTNGSSKIVFTTRSAGGCGL 202 (769)
Q Consensus 127 ~~i~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~iivTtR~~~v~~~ 202 (769)
..++..+..... .....+.++....+++.+.++ |+||||||||+..++..+ ++|++||||||++.++..
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHh
Confidence 778887765331 123456788888999999877 999999999998777654 468999999999998743
Q ss_pred -ccccceEEcCC-CCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHHHhcCCCChhHHHHHHHHHH
Q 046742 203 -MEAHRIFKVKC-LEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGRAMAFKKTPQEWKDAIQVLR 280 (769)
Q Consensus 203 -~~~~~~~~l~~-l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~~l~ 280 (769)
......+.+++ |+.+||++||...++... +...+.+++|+++|+|+||||+++|++|+.+. ..|+..++.+.
T Consensus 273 ~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~ 346 (1249)
T 3sfz_A 273 VMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQ 346 (1249)
T ss_dssp CCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHH
T ss_pred hcCCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHh
Confidence 45567899996 999999999999885433 34467799999999999999999999998643 46888888776
Q ss_pred hcccC-CC-------------------Chh-hhhhHHhhhcCCCCCCccchhHHHHHHhhcCccccchhHhHHHHHHHHh
Q 046742 281 RSASE-FP-------------------GMD-EIKSCFLYCCLFPEDCDISKIDLIDCWIGEGFFDEYDRGYTIIGDLLRA 339 (769)
Q Consensus 281 ~~~~~-~~-------------------~~~-~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~L~~~ 339 (769)
..... +. .++ ..|.||+|||+||+++.|+.+.++.+|.+++ ..+.+++.+|+++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~-----~~~~~~l~~L~~~ 421 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLET-----EEVEDILQEFVNK 421 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH-----HHHHHHHHHHHHT
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCH-----HHHHHHHHHHHhc
Confidence 54211 00 000 1899999999999999999999999997653 3678899999999
Q ss_pred hcccccCCC---ceEEhHHHHHHHHHHHhh
Q 046742 340 CLLEEVNDN---NVKLHDVIRDMGLWIASE 366 (769)
Q Consensus 340 sll~~~~~~---~~~mhdl~~~~~~~~~~~ 366 (769)
||++..... +|+||+++|++++..+.+
T Consensus 422 sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 422 SLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp TSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred cceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence 999876333 599999999999887654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.98 E-value=8.8e-32 Score=307.84 Aligned_cols=292 Identities=18% Similarity=0.273 Sum_probs=220.5
Q ss_pred cCCCCCCCCchHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHhhccCC-CCCC-cEEEEEEeCcccc--HHHH
Q 046742 52 ERPIPQTLGLESTFDEVWRCLGE--EHVGIIGLYGMGEVGKTTLLTRINNKFSNT-PNGF-DFVIWVVLSRDLQ--IDRL 125 (769)
Q Consensus 52 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~~f-~~~~wv~~~~~~~--~~~~ 125 (769)
|++.+.||||+.++++|.++|.. ++.++|+|+||||+||||||++++++. .. ..+| +.++|++++.... +...
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQDKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESCCHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCCchHHHHHH
Confidence 34557899999999999999973 567899999999999999999999875 22 4567 5899999876521 2233
Q ss_pred HHHHHHHhCCCC--cccccccHHHHHHHHHHHHcc--CCEEEEEecccCcccccccCCCCCCCCCCcEEEEeeccCCccc
Q 046742 126 QENIARKIGLYD--QSWKNKRLEIKAADIFKILSR--KKFVLLLDDIWNRVDLEKLGIPPMNTNGSSKIVFTTRSAGGCG 201 (769)
Q Consensus 126 ~~~i~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~iivTtR~~~v~~ 201 (769)
+..++..++... ......+.+.....+.+.+.+ +++||||||||+...+..+ +.|++||||||+..++.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHH
Confidence 333445555211 112345667778888888876 7899999999987666543 45899999999998765
Q ss_pred cccccceEEc---CCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHHHhcCCCChhHHHHHHHH
Q 046742 202 LMEAHRIFKV---KCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGRAMAFKKTPQEWKDAIQV 278 (769)
Q Consensus 202 ~~~~~~~~~l---~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~~ 278 (769)
.+. ...+++ ++|+.+||+++|...++... ....+.+.+|+++|+|+|+||..+|++++.+. ..|.+.++.
T Consensus 272 ~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~ 344 (591)
T 1z6t_A 272 SVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQ 344 (591)
T ss_dssp TCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHH
T ss_pred hcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHH
Confidence 433 234444 68999999999999887532 12246789999999999999999999998642 368888887
Q ss_pred HHhcccC-C-------------------CChh-hhhhHHhhhcCCCCCCccchhHHHHHHhhcCccccchhHhHHHHHHH
Q 046742 279 LRRSASE-F-------------------PGMD-EIKSCFLYCCLFPEDCDISKIDLIDCWIGEGFFDEYDRGYTIIGDLL 337 (769)
Q Consensus 279 l~~~~~~-~-------------------~~~~-~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~L~ 337 (769)
+...... + +.++ ..|.||+++|+||+++.|+...++..|.+++ ..+...+.+|+
T Consensus 345 l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~-----~~~~~~l~~L~ 419 (591)
T 1z6t_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMET-----EEVEDILQEFV 419 (591)
T ss_dssp HHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH-----HHHHHHHHHHH
T ss_pred HHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCH-----HHHHHHHHHHH
Confidence 7643211 0 0111 1899999999999999999999999996542 25677899999
Q ss_pred Hhhccccc---CCCceEEhHHHHHHHHHH
Q 046742 338 RACLLEEV---NDNNVKLHDVIRDMGLWI 363 (769)
Q Consensus 338 ~~sll~~~---~~~~~~mhdl~~~~~~~~ 363 (769)
++||++.. ....|.||++++++++..
T Consensus 420 ~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 420 NKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred hCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 99999854 234799999999999876
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.3e-23 Score=223.53 Aligned_cols=293 Identities=18% Similarity=0.267 Sum_probs=166.9
Q ss_pred CcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEe
Q 046742 389 GKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLN 468 (769)
Q Consensus 389 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 468 (769)
..++++++|++.++.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++| .+..+| .+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEE
Confidence 3455677777777777777767777777777777777776665 677777777777777 555555 467777777777
Q ss_pred ccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEE
Q 046742 469 LSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGIN 548 (769)
Q Consensus 469 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 548 (769)
+++|.+..+|. +..+++|++|++++|.....++. +..+++|++|++++|......+ +..+++|+.|+++
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--------~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--------IANLTDLYSLSLN 185 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--------GGGCTTCSEEECT
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--------hccCCCCCEEEcc
Confidence 77777777665 77777777777777765555554 6777777777777766543321 5566777777776
Q ss_pred eccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccCcccc
Q 046742 549 LTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQF 628 (769)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 628 (769)
.+....++.+ .....++.|.+.+ +......++..+++|++|++++|. ++.++. ...+
T Consensus 186 ~n~l~~~~~~----~~l~~L~~L~l~~---n~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~---------------~~~l 242 (347)
T 4fmz_A 186 YNQIEDISPL----ASLTSLHYFTAYV---NQITDITPVANMTRLNSLKIGNNK-ITDLSP---------------LANL 242 (347)
T ss_dssp TSCCCCCGGG----GGCTTCCEEECCS---SCCCCCGGGGGCTTCCEEECCSSC-CCCCGG---------------GTTC
T ss_pred CCcccccccc----cCCCccceeeccc---CCCCCCchhhcCCcCCEEEccCCc-cCCCcc---------------hhcC
Confidence 5554443321 1112333333322 222222235566677777776653 222211 1235
Q ss_pred ccccEEEEecCcCCcccccccccCCccEEEEeecCcchhhcccccCCccccccCCccccccceecccccccccccC-CCC
Q 046742 629 HSLYYVVVSDCNKLRNLSWLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKLKSIY-PNA 707 (769)
Q Consensus 629 ~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~-~~~ 707 (769)
++|+.|++++| .++.++.+..+++|++|++++| .++.+ ..+..+++|+.|++++|. +...+ ...
T Consensus 243 ~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~------------~~~~~l~~L~~L~L~~n~-l~~~~~~~l 307 (347)
T 4fmz_A 243 SQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDI------------SVLNNLSQLNSLFLNNNQ-LGNEDMEVI 307 (347)
T ss_dssp TTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCC------------GGGGGCTTCSEEECCSSC-CCGGGHHHH
T ss_pred CCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCC------------hhhcCCCCCCEEECcCCc-CCCcChhHh
Confidence 56666666665 4445555556666666666654 22222 123445566666666542 22222 122
Q ss_pred CCCCCccEEEecC-----------CCCCCCCCCCCCCC
Q 046742 708 LPFLHLKEIKVSN-----------CPELKKLPLDSNSA 734 (769)
Q Consensus 708 ~~~~~L~~L~i~~-----------c~~L~~L~l~~n~~ 734 (769)
..+++|+.|++++ +++|+.|++++|.+
T Consensus 308 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVI 345 (347)
T ss_dssp HTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC--
T ss_pred hccccCCEEEccCCccccccChhhhhccceeehhhhcc
Confidence 2334444444433 45555555555554
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=3.1e-22 Score=222.73 Aligned_cols=298 Identities=23% Similarity=0.283 Sum_probs=198.3
Q ss_pred EEecCCccccCCCCCcceeEEEEeeccccccccc--CCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCc
Q 046742 375 FVQAGARLTEAPETGKWQVIRRMSLMENQVQSLS--KIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLK 452 (769)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 452 (769)
+...+..+..+|.. -.++++.|++++|.++.++ .+.++++|++|++++|.++.+++..|..+++|++|+|++| .++
T Consensus 16 v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~ 93 (477)
T 2id5_A 16 VLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLK 93 (477)
T ss_dssp EECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCC
T ss_pred EEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCC
Confidence 44455566666542 2357899999999998874 3788999999999999999887777899999999999999 666
Q ss_pred cccc-cccCCcCCCEEeccCCCCccc-chhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhh
Q 046742 453 QLPS-GISRLVSLQHLNLSLTNIKEL-PEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCE 530 (769)
Q Consensus 453 ~lp~-~i~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 530 (769)
.+|. .+.++++|++|++++|.+..+ |..+.++++|++|++++|. +..++...+.++++|++|++++|.+....+
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--- 169 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPT--- 169 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCH---
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccCh---
Confidence 7765 478899999999999998865 5568899999999999986 566655558899999999999887655433
Q ss_pred hHHHHhhcCcCCcEEEEEeccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEec
Q 046742 531 VLMEEVLLMENLNVLGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIE 610 (769)
Q Consensus 531 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~ 610 (769)
..+..+++|+.|+++.+....+.. ..+..+++|++|++++|+.+..++..
T Consensus 170 ---~~l~~l~~L~~L~l~~n~i~~~~~---------------------------~~~~~l~~L~~L~l~~~~~~~~~~~~ 219 (477)
T 2id5_A 170 ---EALSHLHGLIVLRLRHLNINAIRD---------------------------YSFKRLYRLKVLEISHWPYLDTMTPN 219 (477)
T ss_dssp ---HHHTTCTTCCEEEEESCCCCEECT---------------------------TCSCSCTTCCEEEEECCTTCCEECTT
T ss_pred ---hHhcccCCCcEEeCCCCcCcEeCh---------------------------hhcccCcccceeeCCCCccccccCcc
Confidence 457788889988888654432211 12345566666666666655544332
Q ss_pred cccccccccccccCccccccccEEEEecCcCCcccc--cccccCCccEEEEeecCcchhhcccccCCccccccCCccccc
Q 046742 611 IGNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLS--WLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFAR 688 (769)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~ 688 (769)
... ..+|+.|++++| .++.++ .+..+++|+.|+++++. ++.+.. ..+..+++
T Consensus 220 ~~~--------------~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~----------~~~~~l~~ 273 (477)
T 2id5_A 220 CLY--------------GLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG----------SMLHELLR 273 (477)
T ss_dssp TTT--------------TCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECT----------TSCTTCTT
T ss_pred ccc--------------CccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccCh----------hhcccccc
Confidence 211 235666666665 344443 24556666666665542 322221 13344555
Q ss_pred cceecccccccccccC-CCCCCCCCccEEEec-------------CCCCCCCCCCCCCCCC
Q 046742 689 LELLILETLPKLKSIY-PNALPFLHLKEIKVS-------------NCPELKKLPLDSNSAK 735 (769)
Q Consensus 689 L~~L~l~~c~~L~~~~-~~~~~~~~L~~L~i~-------------~c~~L~~L~l~~n~~~ 735 (769)
|+.|+|+++ .+..+. .....+++|+.|+++ +|++|+.|++++|.++
T Consensus 274 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 274 LQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCEEECCSS-CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCEEECCCC-ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 666666552 333332 233345555555554 3567777777777664
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=3.1e-22 Score=229.94 Aligned_cols=150 Identities=21% Similarity=0.212 Sum_probs=120.4
Q ss_pred EEecCCccccCCCCCcceeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCc
Q 046742 375 FVQAGARLTEAPETGKWQVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLK 452 (769)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 452 (769)
+...+.+++.+|.. -.+++++|++++|.++.++. +.++++|++|++++|.++.+++..|..+++|++|+|++|....
T Consensus 16 ~~c~~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 16 YQCMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp EECTTSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred eEccCCCcccCCCC-CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc
Confidence 44556666666652 23689999999999888765 7889999999999999998888778999999999999994434
Q ss_pred cccccccCCcCCCEEeccCCCCcccc-hhhhcCCCCcEEecCCCcCcC-ccCcccccCCcccceeeeecccccccc
Q 046742 453 QLPSGISRLVSLQHLNLSLTNIKELP-EELKALVNLKCLNLDYTKSLC-RIPRHLISNFSMLYILRIVDCHYFEEV 526 (769)
Q Consensus 453 ~lp~~i~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~-~~p~~~i~~L~~L~~L~l~~~~~~~~~ 526 (769)
..|..++++.+|++|++++|.+..+| ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+....
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEEC
T ss_pred cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecC
Confidence 44888999999999999999998777 568999999999999987433 46776 889999999999988765543
No 8
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=3.3e-22 Score=226.81 Aligned_cols=166 Identities=22% Similarity=0.310 Sum_probs=130.7
Q ss_pred cCCccccCCCCCcceeEEEEeeccccccccc--CCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcccc
Q 046742 378 AGARLTEAPETGKWQVIRRMSLMENQVQSLS--KIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLP 455 (769)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp 455 (769)
.+..++.+|.. -.+++++|++++|.++.++ .+.++++|++|++++|.++.+++..|..+++|++|++++| .+..+|
T Consensus 13 ~~~~l~~ip~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~ 90 (549)
T 2z81_A 13 RSRSFTSIPSG-LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLS 90 (549)
T ss_dssp TTSCCSSCCSC-CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCC
T ss_pred CCCcccccccc-CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccC
Confidence 44556666653 2368999999999998764 3789999999999999999998888999999999999999 555555
Q ss_pred -ccccCCcCCCEEeccCCCCcc--cchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhH
Q 046742 456 -SGISRLVSLQHLNLSLTNIKE--LPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVL 532 (769)
Q Consensus 456 -~~i~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 532 (769)
..++++++|++|++++|.++. +|..++++++|++|++++|..+..+|...+.++++|++|++++|.+....+
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----- 165 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS----- 165 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-----
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh-----
Confidence 459999999999999999984 567799999999999999987788886568999999999999988765443
Q ss_pred HHHhhcCcCCcEEEEEecc
Q 046742 533 MEEVLLMENLNVLGINLTS 551 (769)
Q Consensus 533 ~~~l~~l~~L~~L~l~~~~ 551 (769)
..+..+++|+.|++..+.
T Consensus 166 -~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 166 -QSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp -TTTTTCSEEEEEEEECSB
T ss_pred -hhhhccccCceEecccCc
Confidence 223344444444444433
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=9.1e-22 Score=209.33 Aligned_cols=296 Identities=16% Similarity=0.234 Sum_probs=231.0
Q ss_pred EEecCCccccCCCCCcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc
Q 046742 375 FVQAGARLTEAPETGKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL 454 (769)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l 454 (769)
+...+..+..++.+..++++++|++++|.++.++.+..+++|++|++++|.++.++. +..+++|++|++++| .+..+
T Consensus 49 L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~i~~~ 125 (347)
T 4fmz_A 49 LVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-NISDI 125 (347)
T ss_dssp EECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-CCCCC
T ss_pred EEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-cccCc
Confidence 444555666777788889999999999999998889999999999999999988854 899999999999999 67777
Q ss_pred cccccCCcCCCEEeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHH
Q 046742 455 PSGISRLVSLQHLNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLME 534 (769)
Q Consensus 455 p~~i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 534 (769)
|. +..+++|++|++++|.....+..+..+++|++|++++|. +..++. +..+++|++|++++|.+....+
T Consensus 126 ~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~~~~------- 194 (347)
T 4fmz_A 126 SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIEDISP------- 194 (347)
T ss_dssp GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCCCCGG-------
T ss_pred hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccccccc-------
Confidence 76 899999999999999555444569999999999999997 566665 7899999999999987654321
Q ss_pred HhhcCcCCcEEEEEeccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccc
Q 046742 535 EVLLMENLNVLGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNI 614 (769)
Q Consensus 535 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~ 614 (769)
+..+++|+.+++..+.......+ .....++.|.+.++ ......++..+++|++|++++|. ++.++ .
T Consensus 195 -~~~l~~L~~L~l~~n~l~~~~~~----~~~~~L~~L~l~~n---~l~~~~~~~~l~~L~~L~l~~n~-l~~~~--~--- 260 (347)
T 4fmz_A 195 -LASLTSLHYFTAYVNQITDITPV----ANMTRLNSLKIGNN---KITDLSPLANLSQLTWLEIGTNQ-ISDIN--A--- 260 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGGG----GGCTTCCEEECCSS---CCCCCGGGTTCTTCCEEECCSSC-CCCCG--G---
T ss_pred -ccCCCccceeecccCCCCCCchh----hcCCcCCEEEccCC---ccCCCcchhcCCCCCEEECCCCc-cCCCh--h---
Confidence 67889999999987766554431 22235666666553 33333337788999999999874 44321 1
Q ss_pred cccccccccCccccccccEEEEecCcCCcccccccccCCccEEEEeecCcchhhcccccCCccccccCCccccccceecc
Q 046742 615 QQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLSWLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLIL 694 (769)
Q Consensus 615 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l 694 (769)
...+++|+.|++++| .++.++.+..+++|+.|++++|. +..... ..+..+++|+.|++
T Consensus 261 ----------~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~----------~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 261 ----------VKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ-LGNEDM----------EVIGGLTNLTTLFL 318 (347)
T ss_dssp ----------GTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCGGGH----------HHHHTCTTCSEEEC
T ss_pred ----------HhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc-CCCcCh----------hHhhccccCCEEEc
Confidence 124789999999998 67778888999999999999875 333222 24566899999999
Q ss_pred cccccccccCCCCCCCCCccEEEecCCC
Q 046742 695 ETLPKLKSIYPNALPFLHLKEIKVSNCP 722 (769)
Q Consensus 695 ~~c~~L~~~~~~~~~~~~L~~L~i~~c~ 722 (769)
++|+ +..++. ...+++|+.|++++|+
T Consensus 319 ~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 319 SQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred cCCc-cccccC-hhhhhccceeehhhhc
Confidence 9965 666655 6678999999999985
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=8.7e-22 Score=224.53 Aligned_cols=149 Identities=25% Similarity=0.281 Sum_probs=111.1
Q ss_pred EEEecCCccccCCCCCcceeEEEEeeccccccccc--CCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCC
Q 046742 374 FFVQAGARLTEAPETGKWQVIRRMSLMENQVQSLS--KIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSL 451 (769)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 451 (769)
.+...+.++..+|.. -.+++++|++++|.++.++ .+.++++|++|++++|.++.+++..|..+++|++|++++| .+
T Consensus 11 ~~~c~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l 88 (570)
T 2z63_A 11 TYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PI 88 (570)
T ss_dssp EEECCSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CC
T ss_pred EEEeCCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cC
Confidence 344555566666642 2347888888888887765 3678888888888888888888777888888888888888 45
Q ss_pred ccc-cccccCCcCCCEEeccCCCCcccch-hhhcCCCCcEEecCCCcCcC-ccCcccccCCcccceeeeeccccccc
Q 046742 452 KQL-PSGISRLVSLQHLNLSLTNIKELPE-ELKALVNLKCLNLDYTKSLC-RIPRHLISNFSMLYILRIVDCHYFEE 525 (769)
Q Consensus 452 ~~l-p~~i~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~-~~p~~~i~~L~~L~~L~l~~~~~~~~ 525 (769)
..+ |..++++.+|++|++++|+++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+...
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEE
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCcccee
Confidence 444 4678888888888888888887775 47888888888888886333 35665 78888888888888766443
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.1e-21 Score=212.32 Aligned_cols=307 Identities=16% Similarity=0.166 Sum_probs=227.0
Q ss_pred CcceeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc-cccccCCcCCC
Q 046742 389 GKWQVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL-PSGISRLVSLQ 465 (769)
Q Consensus 389 ~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~ 465 (769)
..+++++++++.++.++.+|. +..+++|++|++++|.++.+++..|..+++|++|++++| .+..+ |..++++++|+
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCC
Confidence 456789999999999999887 678999999999999999998877999999999999999 45555 56689999999
Q ss_pred EEeccCCCCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcE
Q 046742 466 HLNLSLTNIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNV 544 (769)
Q Consensus 466 ~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~ 544 (769)
+|++++|.++.+|.. ++++++|++|++++|. +..++...+..+++|++|++++|.+... .+..+++|+.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~l~~L~~ 190 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV---------DLSLIPSLFH 190 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBC---------CGGGCTTCSE
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCcc---------ccccccccce
Confidence 999999999999987 5899999999999997 5677666689999999999999876543 1456788898
Q ss_pred EEEEeccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccC
Q 046742 545 LGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVH 624 (769)
Q Consensus 545 L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 624 (769)
++++.+....+. ....++.|.+.+..-. . .+....++|+.|+++++. ++.. .+
T Consensus 191 L~l~~n~l~~~~-------~~~~L~~L~l~~n~l~---~-~~~~~~~~L~~L~l~~n~-l~~~--~~------------- 243 (390)
T 3o6n_A 191 ANVSYNLLSTLA-------IPIAVEELDASHNSIN---V-VRGPVNVELTILKLQHNN-LTDT--AW------------- 243 (390)
T ss_dssp EECCSSCCSEEE-------CCSSCSEEECCSSCCC---E-EECCCCSSCCEEECCSSC-CCCC--GG-------------
T ss_pred eecccccccccC-------CCCcceEEECCCCeee---e-ccccccccccEEECCCCC-Cccc--HH-------------
Confidence 888765543321 2235555655443211 1 122334688888888764 3321 11
Q ss_pred ccccccccEEEEecCcCCccc--ccccccCCccEEEEeecCcchhhcccccCCccccccCCccccccceecccccccccc
Q 046742 625 GFQFHSLYYVVVSDCNKLRNL--SWLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKLKS 702 (769)
Q Consensus 625 ~~~~~~L~~L~l~~c~~l~~l--~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~ 702 (769)
...+++|+.|+++++ .++.. ..+..+++|+.|+++++ .++.++. ....+++|+.|+++++ .+..
T Consensus 244 l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-----------~~~~l~~L~~L~L~~n-~l~~ 309 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVALNL-----------YGQPIPTLKVLDLSHN-HLLH 309 (390)
T ss_dssp GGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSS-CCCEEEC-----------SSSCCTTCCEEECCSS-CCCC
T ss_pred HcCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCC-cCcccCc-----------ccCCCCCCCEEECCCC-ccee
Confidence 134789999999988 44443 34778899999999875 3444432 3456899999999995 7778
Q ss_pred cCCCCCCCCCccEEEecCC----------CCCCCCCCCCCCCCCcceEEEehhhhhcccc
Q 046742 703 IYPNALPFLHLKEIKVSNC----------PELKKLPLDSNSAKGHKIVIRGEESWWEELQ 752 (769)
Q Consensus 703 ~~~~~~~~~~L~~L~i~~c----------~~L~~L~l~~n~~~~~~~~i~~~~~w~~~l~ 752 (769)
++.....+++|+.|+++++ ++|+.|++++|.++. ++...|+..+.
T Consensus 310 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~-----~~~~~~~~~~~ 364 (390)
T 3o6n_A 310 VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDC-----NSLRALFRNVA 364 (390)
T ss_dssp CGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEH-----HHHHHHTTTCC
T ss_pred cCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccc-----hhHHHHHHHHH
Confidence 8776667788888888765 556666666665532 33455555444
No 12
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=3.6e-22 Score=219.43 Aligned_cols=146 Identities=18% Similarity=0.225 Sum_probs=92.1
Q ss_pred CcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEe
Q 046742 389 GKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLN 468 (769)
Q Consensus 389 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 468 (769)
..++++++|++++|.++.+|.+..+++|++|++++|.++.++ ++.+++|++|++++| .++.+| ++++++|++|+
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEE
T ss_pred hHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCCEEE
Confidence 345566777777776666666666677777777777666653 566677777777776 454554 66667777777
Q ss_pred ccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEE
Q 046742 469 LSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGIN 548 (769)
Q Consensus 469 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 548 (769)
+++|+++.+| ++.+++|++|++++|. +..++ ++.+++|++|++++|.....++ +..+++|+.|+++
T Consensus 113 L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~~~~~--------~~~l~~L~~L~ls 178 (457)
T 3bz5_A 113 CDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKITKLD--------VTPQTQLTTLDCS 178 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCCCCCC--------CTTCTTCCEEECC
T ss_pred CCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCcccccc--------cccCCcCCEEECC
Confidence 7777666665 6666777777777665 44443 5566677777776665433321 3455666666666
Q ss_pred eccchh
Q 046742 549 LTSSHA 554 (769)
Q Consensus 549 ~~~~~~ 554 (769)
.+....
T Consensus 179 ~n~l~~ 184 (457)
T 3bz5_A 179 FNKITE 184 (457)
T ss_dssp SSCCCC
T ss_pred CCccce
Confidence 555444
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=2.8e-22 Score=221.72 Aligned_cols=336 Identities=17% Similarity=0.169 Sum_probs=203.4
Q ss_pred EEEecCCccccCCCCCcceeEEEEeeccccccccc--CCCCCCCccEEEccCCCCc-ccchhhhcCCCcceEEEecCCCC
Q 046742 374 FFVQAGARLTEAPETGKWQVIRRMSLMENQVQSLS--KIPSCPSLITLFLNNNNLK-VITDGFFQFMPSLKVLNLSNNQS 450 (769)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~ 450 (769)
.+...+.++..+|.. .+++++|++++|.++.++ .+.++++|++|++++|.+. .+++..|..+++|++|+|++|..
T Consensus 14 ~~~c~~~~l~~lp~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 14 NAICINRGLHQVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp EEECCSSCCSSCCCC--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred ccCcCCCCcccCCCC--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 355566677777763 368999999999998863 3789999999999999886 67777799999999999999955
Q ss_pred CccccccccCCcCCCEEeccCCCCcc-cchh--hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccc
Q 046742 451 LKQLPSGISRLVSLQHLNLSLTNIKE-LPEE--LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVE 527 (769)
Q Consensus 451 ~~~lp~~i~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 527 (769)
....|..++++.+|++|++++|.++. +|.. ++.+++|++|++++|......|...+.++++|++|++++|.+....+
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 55558889999999999999999985 4555 89999999999999985444465558899999999999988755433
Q ss_pred hhhhHH----------------------------HHhhcCcCCcEEEEEeccchh-hhhhhcccccccccceeeecccCC
Q 046742 528 NCEVLM----------------------------EEVLLMENLNVLGINLTSSHA-LSKFLSSHRIQSYILHLRLELLED 578 (769)
Q Consensus 528 ~~~~~~----------------------------~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~ 578 (769)
...... ..+..+++|+.|+++.+.... .+..+........++.|.+.+...
T Consensus 172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence 111000 001122344444444433221 111110000112333333332211
Q ss_pred Ccc---------ccccCcc--cccCCCeEEEeccCCcceEEeccccccccccccccCccccccccEEEEecCcCCcccc-
Q 046742 579 SRS---------LNVLPLA--NIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLS- 646 (769)
Q Consensus 579 ~~~---------~~~~~l~--~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~- 646 (769)
... .....+. ..++|++|+++++.. ..+.... ...+++|+.|++++|. ++.++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~-------------~~~l~~L~~L~Ls~n~-l~~~~~ 316 (455)
T 3v47_A 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI-FALLKSV-------------FSHFTDLEQLTLAQNE-INKIDD 316 (455)
T ss_dssp TSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC-CEECTTT-------------TTTCTTCCEEECTTSC-CCEECT
T ss_pred cccccchhhhccCcccccccccccCceEEEecCccc-cccchhh-------------cccCCCCCEEECCCCc-ccccCh
Confidence 000 0000111 124566666655432 2111111 1235666777776663 33332
Q ss_pred -cccccCCccEEEEeecCcchhhcccccCCccccccCCccccccceeccccccccccc-CCCCCCCCCccEEEec-----
Q 046742 647 -WLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKLKSI-YPNALPFLHLKEIKVS----- 719 (769)
Q Consensus 647 -~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~-~~~~~~~~~L~~L~i~----- 719 (769)
.+..+++|++|+++++. ++.+.. ..+..+++|+.|+++++ .+..+ +.....+++|++|+++
T Consensus 317 ~~~~~l~~L~~L~Ls~N~-l~~~~~----------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNF-LGSIDS----------RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp TTTTTCTTCCEEECCSSC-CCEECG----------GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred hHhcCcccCCEEECCCCc-cCCcCh----------hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCccc
Confidence 35566677777776542 232211 13445666777777664 44444 3344556666666665
Q ss_pred --------CCCCCCCCCCCCCCCCCcc
Q 046742 720 --------NCPELKKLPLDSNSAKGHK 738 (769)
Q Consensus 720 --------~c~~L~~L~l~~n~~~~~~ 738 (769)
++++|+.|++++|.+++..
T Consensus 385 ~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 385 SVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cCCHhHhccCCcccEEEccCCCcccCC
Confidence 4577888888888887543
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=1.8e-21 Score=215.58 Aligned_cols=256 Identities=20% Similarity=0.267 Sum_probs=153.2
Q ss_pred ecCCccccCCCCCcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccc
Q 046742 377 QAGARLTEAPETGKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPS 456 (769)
Q Consensus 377 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~ 456 (769)
..+..+..++....+++|++|++++|.++.++.+.++++|++|++++|.+..+++ +..+++|++|++++| .+..+|.
T Consensus 53 l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~ 129 (466)
T 1o6v_A 53 ADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDIDP 129 (466)
T ss_dssp CCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG
T ss_pred cCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCChH
Confidence 3444555666677778888888888888887778888888888888888887776 788888888888888 6666664
Q ss_pred cccCCcCCCEEeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHh
Q 046742 457 GISRLVSLQHLNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEV 536 (769)
Q Consensus 457 ~i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l 536 (769)
+.++++|++|++++|.+..+| .++.+++|++|+++++ +..++. +.++++|++|++++|.+... ..+
T Consensus 130 -~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~~~--------~~l 195 (466)
T 1o6v_A 130 -LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVSDI--------SVL 195 (466)
T ss_dssp -GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCCCC--------GGG
T ss_pred -HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCCCC--------hhh
Confidence 788888888888888887776 3667777777776532 334443 66777777777776654332 124
Q ss_pred hcCcCCcEEEEEeccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccC-----------Ccc
Q 046742 537 LLMENLNVLGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCE-----------KLE 605 (769)
Q Consensus 537 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-----------~l~ 605 (769)
..+++|+.|+++.+.......+ .....++.|.+.+. .......+..+++|++|++++|. .++
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~l~~n---~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~ 268 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITPL----GILTNLDELSLNGN---QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLT 268 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGGG----GGCTTCCEEECCSS---CCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCS
T ss_pred ccCCCCCEEEecCCcccccccc----cccCCCCEEECCCC---CcccchhhhcCCCCCEEECCCCccccchhhhcCCCCC
Confidence 5566666666665544333221 11223444443332 11111224445555555555432 122
Q ss_pred eEEeccccccccccccccCccccccccEEEEecCcCCcccccccccCCccEEEEeec
Q 046742 606 ELKIEIGNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLSWLGLAPNLLTIDILRC 662 (769)
Q Consensus 606 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c 662 (769)
.+..+.+.+.. ......+++|+.|++++| .++.++.+..+++|+.|++++|
T Consensus 269 ~L~l~~n~l~~-----~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 269 ELKLGANQISN-----ISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN 319 (466)
T ss_dssp EEECCSSCCCC-----CGGGTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS
T ss_pred EEECCCCccCc-----cccccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCC
Confidence 22222221110 000123556666666665 4445555566666666666654
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=8.3e-22 Score=230.22 Aligned_cols=310 Identities=13% Similarity=0.136 Sum_probs=202.6
Q ss_pred CCCcceeEEEEeeccccccc------------------ccC-CC--CCCCccEEEccCCCCcccchhhhcCCCcceEEEe
Q 046742 387 ETGKWQVIRRMSLMENQVQS------------------LSK-IP--SCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNL 445 (769)
Q Consensus 387 ~~~~~~~l~~L~l~~~~~~~------------------~~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 445 (769)
.+..+++|+.|++++|.++. +|. +. ++++|++|++++|.+....+..|+.+++|++|+|
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 46677899999999999988 776 44 8999999999999866554556999999999999
Q ss_pred cCCCCCc--cccccccCCc-------CCCEEeccCCCCcccch--hhhcCCCCcEEecCCCcCcCccCcccccCCcccce
Q 046742 446 SNNQSLK--QLPSGISRLV-------SLQHLNLSLTNIKELPE--ELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYI 514 (769)
Q Consensus 446 ~~~~~~~--~lp~~i~~l~-------~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~ 514 (769)
++|..+. .+|..++++. +|++|++++|.+..+|. .++++++|+.|++++|. +..+| . ++.+++|++
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-FGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-CCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-hcCCCcceE
Confidence 9996244 5898887776 99999999999999999 89999999999999997 55899 3 899999999
Q ss_pred eeeeccccccccchhhhHHHHhhcCcC-CcEEEEEeccchhhhhhhcccccccccceeeecccCCCccccccC--cc--c
Q 046742 515 LRIVDCHYFEEVENCEVLMEEVLLMEN-LNVLGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLP--LA--N 589 (769)
Q Consensus 515 L~l~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~--l~--~ 589 (769)
|++++|.+. .++ ..+..+++ |+.|+++.+....++..+.... ...++.|.+.+..-.......+ +. .
T Consensus 600 L~Ls~N~l~-~lp------~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~-~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 600 LKLDYNQIE-EIP------EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS-VYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp EECCSSCCS-CCC------TTSCEECTTCCEEECCSSCCCSCCSCCCTTC-SSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred EECcCCccc-cch------HHHhhccccCCEEECcCCCCCcCchhhhccc-cCCCCEEECcCCcCCCccccchhhhcccc
Confidence 999999876 444 34677888 9999998877665543322111 0124555544432211111011 11 2
Q ss_pred ccCCCeEEEeccC-------------CcceEEeccccccccccccccC-----ccccccccEEEEecCcCCccccc-cc-
Q 046742 590 IKNLESLGFRNCE-------------KLEELKIEIGNIQQNVCVSQVH-----GFQFHSLYYVVVSDCNKLRNLSW-LG- 649 (769)
Q Consensus 590 l~~L~~L~l~~~~-------------~l~~l~~~~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~c~~l~~l~~-l~- 649 (769)
+++|+.|++++|. .++.+.++.+.+. .++..... -..+++|+.|++++| .++.++. +.
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~ 749 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRA 749 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGST
T ss_pred CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCC-CCccchHHhhh
Confidence 2356666655432 2222222222111 00000000 012337777888777 4555543 43
Q ss_pred -ccCCccEEEEeecCcchhhcccccCCccccccCCccccccceecccc------cccccccCCCCCCCCCccEEEecCC
Q 046742 650 -LAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILET------LPKLKSIYPNALPFLHLKEIKVSNC 721 (769)
Q Consensus 650 -~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~------c~~L~~~~~~~~~~~~L~~L~i~~c 721 (769)
.+++|+.|+++++ .++.++. .+..+++|+.|+|++ +.....+|.....+++|+.|++++|
T Consensus 750 ~~l~~L~~L~Ls~N-~L~~lp~-----------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 750 TTLPYLSNMDVSYN-CFSSFPT-----------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp TTCTTCCEEECCSS-CCSSCCC-----------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred ccCCCcCEEEeCCC-CCCccch-----------hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence 6777888887764 2333321 344567777777765 3334455555566677777777665
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=2.9e-21 Score=221.83 Aligned_cols=169 Identities=18% Similarity=0.138 Sum_probs=134.2
Q ss_pred EEecCCccccCCCCCcceeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCc
Q 046742 375 FVQAGARLTEAPETGKWQVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLK 452 (769)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 452 (769)
+...+.++..+|.. -...+++|++++|.++.++. +.++++|++|++++|.+..+.+..|..+++|++|+|++|....
T Consensus 17 ~~c~~~~l~~iP~~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 17 YNCENLGLNEIPGT-LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp EECTTSCCSSCCTT-SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE
T ss_pred EECCCCCcccCcCC-CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc
Confidence 44555566666542 22479999999999988753 7899999999999999999988889999999999999995555
Q ss_pred cccccccCCcCCCEEeccCCCCccc-chhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhh
Q 046742 453 QLPSGISRLVSLQHLNLSLTNIKEL-PEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEV 531 (769)
Q Consensus 453 ~lp~~i~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 531 (769)
..|..++++.+|++|++++|.++.+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+....+
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---- 170 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSK---- 170 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECH----
T ss_pred cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccCh----
Confidence 5688899999999999999999987 5669999999999999997 555532225569999999999988765544
Q ss_pred HHHHhhcCcCCc--EEEEEecc
Q 046742 532 LMEEVLLMENLN--VLGINLTS 551 (769)
Q Consensus 532 ~~~~l~~l~~L~--~L~l~~~~ 551 (769)
..+..+++|+ .++++.+.
T Consensus 171 --~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 171 --EDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp --HHHHTTTTCCSEEEECTTCC
T ss_pred --hhhhhhcccceeEEecCCCc
Confidence 4567778887 45544443
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=3e-21 Score=213.78 Aligned_cols=243 Identities=18% Similarity=0.243 Sum_probs=180.6
Q ss_pred cceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEec
Q 046742 390 KWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNL 469 (769)
Q Consensus 390 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 469 (769)
.+++++.|++.++.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++| .+..++. +.++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCC-ccccChh-hcCCCCCCEEEC
Confidence 356899999999999999999999999999999999999887 899999999999999 6667766 999999999999
Q ss_pred cCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEe
Q 046742 470 SLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINL 549 (769)
Q Consensus 470 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 549 (769)
++|.++.+|. ++++++|++|++++|. +..++. +..+++|++|++.+ ..... ..+..+++|+.|+++.
T Consensus 120 ~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~-~~~~~--------~~~~~l~~L~~L~l~~ 186 (466)
T 1o6v_A 120 FNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGN-QVTDL--------KPLANLTTLERLDISS 186 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEE-SCCCC--------GGGTTCTTCCEEECCS
T ss_pred CCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCC-cccCc--------hhhccCCCCCEEECcC
Confidence 9999999876 9999999999999997 677775 89999999999973 22221 1267889999999998
Q ss_pred ccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccC-----------CcceEEeccccccccc
Q 046742 550 TSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCE-----------KLEELKIEIGNIQQNV 618 (769)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-----------~l~~l~~~~~~~~~~~ 618 (769)
+....++.+ ....+++.|.+.+ +......++..+++|+.|+++++. .++.+..+.+.+..
T Consensus 187 n~l~~~~~l----~~l~~L~~L~l~~---n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-- 257 (466)
T 1o6v_A 187 NKVSDISVL----AKLTNLESLIATN---NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN-- 257 (466)
T ss_dssp SCCCCCGGG----GGCTTCSEEECCS---SCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC--
T ss_pred CcCCCChhh----ccCCCCCEEEecC---CcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc--
Confidence 776554432 2223555555554 333333457788999999998753 23333333332211
Q ss_pred cccccCccccccccEEEEecCcCCcccccccccCCccEEEEeec
Q 046742 619 CVSQVHGFQFHSLYYVVVSDCNKLRNLSWLGLAPNLLTIDILRC 662 (769)
Q Consensus 619 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c 662 (769)
..+...+++|+.|++++| .++.++.+..+++|+.|++++|
T Consensus 258 ---~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n 297 (466)
T 1o6v_A 258 ---LAPLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNEN 297 (466)
T ss_dssp ---CGGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSS
T ss_pred ---chhhhcCCCCCEEECCCC-ccCccccccCCCccCeEEcCCC
Confidence 111234567777777766 4455555667777777777664
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=6.8e-22 Score=227.09 Aligned_cols=320 Identities=14% Similarity=0.160 Sum_probs=198.9
Q ss_pred CCcceeEEEEeeccccccc------------------ccC-CC--CCCCccEEEccCCCCcccchhhhcCCCcceEEEec
Q 046742 388 TGKWQVIRRMSLMENQVQS------------------LSK-IP--SCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLS 446 (769)
Q Consensus 388 ~~~~~~l~~L~l~~~~~~~------------------~~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 446 (769)
+..+++|++|++++|.++. +|. +. ++++|++|++++|.+....+..|+.+++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 5667889999999999887 776 56 79999999999998765555568899999999999
Q ss_pred CCCCCc--cccccccCC------cCCCEEeccCCCCcccch--hhhcCCCCcEEecCCCcCcCccCcccccCCcccceee
Q 046742 447 NNQSLK--QLPSGISRL------VSLQHLNLSLTNIKELPE--ELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILR 516 (769)
Q Consensus 447 ~~~~~~--~lp~~i~~l------~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~ 516 (769)
+|..++ .+|..++.+ ++|++|++++|+++.+|. .++++++|++|++++|...+.+| . ++.+++|++|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEE
Confidence 996244 689888877 899999999999999998 89999999999999998544888 4 88999999999
Q ss_pred eeccccccccchhhhHHHHhhcCcC-CcEEEEEeccchhhhhhhcccccccccceeeecccCCCccccccC--cc-----
Q 046742 517 IVDCHYFEEVENCEVLMEEVLLMEN-LNVLGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLP--LA----- 588 (769)
Q Consensus 517 l~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~--l~----- 588 (769)
+++|.+. .++ ..+..+++ |+.|+++.+....++..+.... ...++.|.+.+.. .....| +.
T Consensus 360 L~~N~l~-~lp------~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~-l~~L~~L~Ls~N~---l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 360 LAYNQIT-EIP------ANFCGFTEQVENLSFAHNKLKYIPNIFDAKS-VSVMSAIDFSYNE---IGSVDGKNFDPLDPT 428 (636)
T ss_dssp CCSSEEE-ECC------TTSEEECTTCCEEECCSSCCSSCCSCCCTTC-SSCEEEEECCSSC---TTTTTTCSSCTTCSS
T ss_pred CCCCccc-ccc------HhhhhhcccCcEEEccCCcCcccchhhhhcc-cCccCEEECcCCc---CCCcchhhhcccccc
Confidence 9988765 333 34677788 8888888777665443221110 1134444443321 111111 22
Q ss_pred --cccCCCeEEEeccC-------------CcceEEeccccccccccccccC-----ccccccccEEEEecCcCCccccc-
Q 046742 589 --NIKNLESLGFRNCE-------------KLEELKIEIGNIQQNVCVSQVH-----GFQFHSLYYVVVSDCNKLRNLSW- 647 (769)
Q Consensus 589 --~l~~L~~L~l~~~~-------------~l~~l~~~~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~c~~l~~l~~- 647 (769)
.+++|++|+++++. .++.+..+.+.+. ..+..... ...+++|+.|++++| .++.++.
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~ 506 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDD 506 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGG
T ss_pred cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC-cCCccChh
Confidence 34455556555432 1111111111111 00000000 001226777777766 3444443
Q ss_pred cc--ccCCccEEEEeecCcchhhcccccCCccccccCCccccccceecccc------cccccccCCCCCCCCCccEEEec
Q 046742 648 LG--LAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILET------LPKLKSIYPNALPFLHLKEIKVS 719 (769)
Q Consensus 648 l~--~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~------c~~L~~~~~~~~~~~~L~~L~i~ 719 (769)
+. .+++|+.|+++++. ++.++. .+..+++|+.|++++ +.....+|.....+++|+.|+++
T Consensus 507 ~~~~~l~~L~~L~Ls~N~-l~~ip~-----------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNS-FSKFPT-----------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp GSTTTCTTCCEEECCSSC-CSSCCC-----------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred hhhccCCCcCEEECCCCC-CCCcCh-----------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 33 66777777776642 222221 344566677776643 22344555555556666666666
Q ss_pred CC----------CCCCCCCCCCCCC
Q 046742 720 NC----------PELKKLPLDSNSA 734 (769)
Q Consensus 720 ~c----------~~L~~L~l~~n~~ 734 (769)
+| ++|+.|++++|.+
T Consensus 575 ~N~l~~ip~~~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 575 SNDIRKVNEKITPNISVLDIKDNPN 599 (636)
T ss_dssp SSCCCBCCSCCCTTCCEEECCSCTT
T ss_pred CCcCCccCHhHhCcCCEEECcCCCC
Confidence 54 3444455555543
No 19
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.2e-21 Score=215.36 Aligned_cols=258 Identities=15% Similarity=0.145 Sum_probs=183.1
Q ss_pred EEEecCCccccCCCCCcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcc
Q 046742 374 FFVQAGARLTEAPETGKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQ 453 (769)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 453 (769)
.+..++..+..++.+..+++|++|++++|.++.++ +..+++|++|++++|.++.++ ++.+++|++|++++| .++.
T Consensus 46 ~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~ 120 (457)
T 3bz5_A 46 SLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTK 120 (457)
T ss_dssp EEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSC
T ss_pred EEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCe
Confidence 34445556666777788899999999999999886 899999999999999998874 788999999999999 6666
Q ss_pred ccccccCCcCCCEEeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHH
Q 046742 454 LPSGISRLVSLQHLNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLM 533 (769)
Q Consensus 454 lp~~i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 533 (769)
+| ++.+++|++|++++|+++.+| ++++++|++|++++|..++.++ ++.+++|++|++++|.+... +
T Consensus 121 l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l-~------ 186 (457)
T 3bz5_A 121 LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL-D------ 186 (457)
T ss_dssp CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC-C------
T ss_pred ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee-c------
Confidence 76 899999999999999999885 8899999999999997777774 78899999999999876542 2
Q ss_pred HHhhcCcCCcEEEEEeccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEecccc
Q 046742 534 EEVLLMENLNVLGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGN 613 (769)
Q Consensus 534 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 613 (769)
+..+++|+.|+++.+....++ ......++.|.+.+ +.... .|+..+++|++|+++++. ++.++.+...
T Consensus 187 --l~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~---N~l~~-ip~~~l~~L~~L~l~~N~-l~~~~~~~l~ 254 (457)
T 3bz5_A 187 --VSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSS---NKLTE-IDVTPLTQLTYFDCSVNP-LTELDVSTLS 254 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCS---SCCSC-CCCTTCTTCSEEECCSSC-CSCCCCTTCT
T ss_pred --cccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcC---Ccccc-cCccccCCCCEEEeeCCc-CCCcCHHHCC
Confidence 567788999998877665442 11123444554443 32222 346778888888887753 4433321110
Q ss_pred ccccccccccCccccccccEEEEecCcCCcccccccccCCccEEEEeecCcchhhc
Q 046742 614 IQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLSWLGLAPNLLTIDILRCPEIEEIS 669 (769)
Q Consensus 614 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~l~ 669 (769)
. ...-.....+|+.|++++|..+..++ .+.+++|+.|++++|..+..++
T Consensus 255 ~------L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 255 K------LTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp T------CCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEE
T ss_pred C------CCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceec
Confidence 0 00000112345555555555444443 4556777777777776555543
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=7.9e-22 Score=231.97 Aligned_cols=323 Identities=21% Similarity=0.221 Sum_probs=195.4
Q ss_pred ccccCCCCCcceeEEEEeeccccccc-ccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcccccccc
Q 046742 381 RLTEAPETGKWQVIRRMSLMENQVQS-LSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGIS 459 (769)
Q Consensus 381 ~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~ 459 (769)
.+........+++|++|++++|.+.. +|.+.++++|++|++++|.++...+..+..+++|++|++++|...+.+|..
T Consensus 189 ~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-- 266 (768)
T 3rgz_A 189 KISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-- 266 (768)
T ss_dssp EEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--
T ss_pred cccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--
Confidence 33434444667788888888888765 455778888888888888887665666888888888888888544455543
Q ss_pred CCcCCCEEeccCCCCc-ccchhhhcC-CCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhh
Q 046742 460 RLVSLQHLNLSLTNIK-ELPEELKAL-VNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVL 537 (769)
Q Consensus 460 ~l~~L~~L~l~~~~l~-~lp~~~~~l-~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 537 (769)
.+++|++|++++|.+. .+|..+..+ ++|++|++++|.....+|.. ++++++|++|++++|.+.+.++ ...+.
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip-----~~~l~ 340 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELP-----MDTLL 340 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEECC-----HHHHT
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCcCC-----HHHHh
Confidence 6777888888887777 677776664 78888888888754456665 7788888888888777654444 12366
Q ss_pred cCcCCcEEEEEeccch-hhhhhhcccccccccceeeecccC-----------------------CCccccccC--ccccc
Q 046742 538 LMENLNVLGINLTSSH-ALSKFLSSHRIQSYILHLRLELLE-----------------------DSRSLNVLP--LANIK 591 (769)
Q Consensus 538 ~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~l~~L~l~~~~-----------------------~~~~~~~~~--l~~l~ 591 (769)
.+++|+.|+++.+... .++..+. .....++.|.+.+.. ++......| +.+++
T Consensus 341 ~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 418 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFSGELPESLT--NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418 (768)
T ss_dssp TCTTCCEEECCSSEEEECCCTTHH--HHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred cCCCCCEEeCcCCccCccccHHHH--hhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC
Confidence 7777777777665443 1111110 001133333333211 111111111 33344
Q ss_pred CCCeEEEeccCCcceEEeccccccccccccccCccccccccEEEEecCcCCcccc-cccccCCccEEEEeecCcchhhcc
Q 046742 592 NLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLS-WLGLAPNLLTIDILRCPEIEEISG 670 (769)
Q Consensus 592 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~l~~ 670 (769)
+|++|+++++.....++.. ...+++|+.|++++|.....++ .+..+++|++|++++|.-...+
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~--------------l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-- 482 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSS--------------LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI-- 482 (768)
T ss_dssp TCCEEECCSSEEESCCCGG--------------GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC--
T ss_pred CCCEEECcCCcccCcccHH--------------HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC--
Confidence 4444444443211111111 1235667777777664332332 3566777777777665322122
Q ss_pred cccCCccccccCCccccccceecccccccccccCCCCCCCCCccEEEecC-------------CCCCCCCCCCCCCCCCc
Q 046742 671 QYSGEVPEMMRNLNPFARLELLILETLPKLKSIYPNALPFLHLKEIKVSN-------------CPELKKLPLDSNSAKGH 737 (769)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~-------------c~~L~~L~l~~n~~~~~ 737 (769)
|. .+..+++|+.|++++|.-...+|.....+++|++|++++ |++|+.|++++|.++|.
T Consensus 483 ------p~---~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 483 ------PS---GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp ------CG---GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred ------CH---HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 21 455677788888887655446666666777777777664 56788888888887765
Q ss_pred c
Q 046742 738 K 738 (769)
Q Consensus 738 ~ 738 (769)
.
T Consensus 554 i 554 (768)
T 3rgz_A 554 I 554 (768)
T ss_dssp C
T ss_pred C
Confidence 4
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=3.4e-21 Score=220.04 Aligned_cols=305 Identities=16% Similarity=0.165 Sum_probs=224.7
Q ss_pred cceeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc-cccccCCcCCCE
Q 046742 390 KWQVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL-PSGISRLVSLQH 466 (769)
Q Consensus 390 ~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~ 466 (769)
.+.+++.+++.++.+..+|. +..+++|++|++++|.++.+++..|..+++|++|+|++|. +..+ |..++++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCE
Confidence 45689999999999998887 5789999999999999999998779999999999999994 5555 456799999999
Q ss_pred EeccCCCCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEE
Q 046742 467 LNLSLTNIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVL 545 (769)
Q Consensus 467 L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L 545 (769)
|++++|.++.+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+.... +..+++|+.|
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------~~~l~~L~~L 197 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD---------LSLIPSLFHA 197 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBCC---------GGGCTTCSEE
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCcC---------hhhhhhhhhh
Confidence 99999999999987 5899999999999997 56666655899999999999998765431 4567888888
Q ss_pred EEEeccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccCc
Q 046742 546 GINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHG 625 (769)
Q Consensus 546 ~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 625 (769)
+++.+....+. ....+..|.+.+..-.. .+....++|+.|+++++. +... .+ .
T Consensus 198 ~l~~n~l~~l~-------~~~~L~~L~ls~n~l~~----~~~~~~~~L~~L~L~~n~-l~~~--~~-------------l 250 (597)
T 3oja_B 198 NVSYNLLSTLA-------IPIAVEELDASHNSINV----VRGPVNVELTILKLQHNN-LTDT--AW-------------L 250 (597)
T ss_dssp ECCSSCCSEEE-------CCTTCSEEECCSSCCCE----EECSCCSCCCEEECCSSC-CCCC--GG-------------G
T ss_pred hcccCcccccc-------CCchhheeeccCCcccc----cccccCCCCCEEECCCCC-CCCC--hh-------------h
Confidence 88765543321 22345556554432211 111223678888888764 3321 11 1
Q ss_pred cccccccEEEEecCcCCccc--ccccccCCccEEEEeecCcchhhcccccCCccccccCCccccccceeccccccccccc
Q 046742 626 FQFHSLYYVVVSDCNKLRNL--SWLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKLKSI 703 (769)
Q Consensus 626 ~~~~~L~~L~l~~c~~l~~l--~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~ 703 (769)
..+++|+.|++++|. ++.. ..++.+++|+.|+++++ .+..++. ....+++|+.|+|++| .+..+
T Consensus 251 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~-----------~~~~l~~L~~L~Ls~N-~l~~i 316 (597)
T 3oja_B 251 LNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNN-RLVALNL-----------YGQPIPTLKVLDLSHN-HLLHV 316 (597)
T ss_dssp GGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTS-CCCEEEC-----------SSSCCTTCCEEECCSS-CCCCC
T ss_pred ccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCC-CCCCCCc-----------ccccCCCCcEEECCCC-CCCcc
Confidence 347899999999884 4443 34778899999999875 3444322 4456899999999984 67788
Q ss_pred CCCCCCCCCccEEEecCC----------CCCCCCCCCCCCCCCcceEEEehhhhhccc
Q 046742 704 YPNALPFLHLKEIKVSNC----------PELKKLPLDSNSAKGHKIVIRGEESWWEEL 751 (769)
Q Consensus 704 ~~~~~~~~~L~~L~i~~c----------~~L~~L~l~~n~~~~~~~~i~~~~~w~~~l 751 (769)
|.....+++|+.|++++| ++|+.|++++|.+++ ++...|+..+
T Consensus 317 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~-----~~~~~~~~~~ 369 (597)
T 3oja_B 317 ERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDC-----NSLRALFRNV 369 (597)
T ss_dssp GGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEH-----HHHHHHTTTC
T ss_pred CcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCC-----hhHHHHHHHH
Confidence 877777888999888764 566666677776543 2334555543
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=3.7e-22 Score=229.28 Aligned_cols=300 Identities=15% Similarity=0.204 Sum_probs=193.7
Q ss_pred ccC-CCCCCCccEEEccCCCCcc------------------cchhhhc--CCCcceEEEecCCCCCccccccccCCcCCC
Q 046742 407 LSK-IPSCPSLITLFLNNNNLKV------------------ITDGFFQ--FMPSLKVLNLSNNQSLKQLPSGISRLVSLQ 465 (769)
Q Consensus 407 ~~~-~~~~~~L~~L~l~~~~~~~------------------~~~~~~~--~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 465 (769)
+|. +.++++|++|++++|.++. +|.. ++ .+++|++|+|++|...+.+|..++++++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 444 6788999999999999988 7665 67 899999999999977888999999999999
Q ss_pred EEeccCCC-Cc--ccchhhhcC------CCCcEEecCCCcCcCccCc--ccccCCcccceeeeeccccccccchhhhHHH
Q 046742 466 HLNLSLTN-IK--ELPEELKAL------VNLKCLNLDYTKSLCRIPR--HLISNFSMLYILRIVDCHYFEEVENCEVLME 534 (769)
Q Consensus 466 ~L~l~~~~-l~--~lp~~~~~l------~~L~~L~l~~~~~l~~~p~--~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 534 (769)
+|++++|+ ++ .+|..++++ ++|++|++++|. +..+|. . ++++++|++|++++|.+.+.++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~-l~~l~~L~~L~L~~N~l~g~ip------- 347 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETS-LQKMKKLGMLECLYNQLEGKLP------- 347 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHH-HTTCTTCCEEECCSCCCEEECC-------
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhh-hccCCCCCEEeCcCCcCccchh-------
Confidence 99999997 88 489888887 999999999997 558887 5 8999999999999988764544
Q ss_pred HhhcCcCCcEEEEEeccchhhhhhhcccccccc-cceeeecccCCCccccccCccc--ccCCCeEEEeccCCcceEEecc
Q 046742 535 EVLLMENLNVLGINLTSSHALSKFLSSHRIQSY-ILHLRLELLEDSRSLNVLPLAN--IKNLESLGFRNCEKLEELKIEI 611 (769)
Q Consensus 535 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-l~~L~l~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~l~~l~~~~ 611 (769)
.+..+++|+.|+++.+....++..+. .... ++.|.+.+..-. .+. ..+.. +++|++|+++++.....+|..+
T Consensus 348 ~~~~l~~L~~L~L~~N~l~~lp~~l~---~l~~~L~~L~Ls~N~l~-~lp-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 422 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQITEIPANFC---GFTEQVENLSFAHNKLK-YIP-NIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422 (636)
T ss_dssp CCEEEEEESEEECCSSEEEECCTTSE---EECTTCCEEECCSSCCS-SCC-SCCCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred hhCCCCCCCEEECCCCccccccHhhh---hhcccCcEEEccCCcCc-ccc-hhhhhcccCccCEEECcCCcCCCcchhhh
Confidence 35677888999888776654443221 1223 666665543322 111 01222 3478888888764322111111
Q ss_pred ccccccccccccCccccccccEEEEecCcCCccccc--ccccCCccEEEEeecCcchhhcccccC---------------
Q 046742 612 GNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLSW--LGLAPNLLTIDILRCPEIEEISGQYSG--------------- 674 (769)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c~~l~~l~~~~~~--------------- 674 (769)
... ......+++|+.|++++| .++.++. +..+++|++|+++++. ++.++.....
T Consensus 423 ~~~-------~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L 493 (636)
T 4eco_A 423 DPL-------DPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSI 493 (636)
T ss_dssp CTT-------CSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEE
T ss_pred ccc-------ccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEE
Confidence 100 000012334445555444 2223322 2224444444444321 1122111000
Q ss_pred --------CccccccCCc--cccccceecccccccccccCCCCCCCCCccEEEec-------------------CCCCCC
Q 046742 675 --------EVPEMMRNLN--PFARLELLILETLPKLKSIYPNALPFLHLKEIKVS-------------------NCPELK 725 (769)
Q Consensus 675 --------~~~~~~~~~~--~l~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~-------------------~c~~L~ 725 (769)
.+|. .+. .+++|+.|++++ +.+..+|.....+++|+.|+++ +|++|+
T Consensus 494 ~Ls~N~l~~lp~---~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~ 569 (636)
T 4eco_A 494 DLRFNKLTKLSD---DFRATTLPYLVGIDLSY-NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569 (636)
T ss_dssp ECCSSCCCBCCG---GGSTTTCTTCCEEECCS-SCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred ECcCCcCCccCh---hhhhccCCCcCEEECCC-CCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCC
Confidence 1111 232 678888888888 4666687777778888888873 357788
Q ss_pred CCCCCCCCC
Q 046742 726 KLPLDSNSA 734 (769)
Q Consensus 726 ~L~l~~n~~ 734 (769)
.|++++|.+
T Consensus 570 ~L~Ls~N~l 578 (636)
T 4eco_A 570 QLQIGSNDI 578 (636)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCcC
Confidence 888888887
No 23
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=7.1e-22 Score=232.36 Aligned_cols=68 Identities=19% Similarity=0.210 Sum_probs=46.7
Q ss_pred ccccccEEEEecCcCCccc-ccccccCCccEEEEeecCcchhhcccccCCccccccCCccccccceecccccccccccCC
Q 046742 627 QFHSLYYVVVSDCNKLRNL-SWLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKLKSIYP 705 (769)
Q Consensus 627 ~~~~L~~L~l~~c~~l~~l-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~ 705 (769)
.+++|+.|++++|.-...+ .+++.+++|++|++++|.-...++. .+..+++|+.|++++|+-...+|.
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-----------~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-----------ELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG-----------GGGGCTTCCEEECCSSEEESBCCG
T ss_pred cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH-----------HHcCCCCCCEEECCCCccCCcCCh
Confidence 4678888888888544344 3577888888888887643323222 566789999999998765545543
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=3e-21 Score=221.67 Aligned_cols=143 Identities=20% Similarity=0.240 Sum_probs=108.0
Q ss_pred ecCCccccCC--CCCcceeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCc
Q 046742 377 QAGARLTEAP--ETGKWQVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLK 452 (769)
Q Consensus 377 ~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 452 (769)
-++..+..++ .+..+++|++|++++|.+..++. +.++++|++|++++|.++.+++..|+.+++|++|++++| .+.
T Consensus 39 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~ 117 (606)
T 3vq2_A 39 LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLA 117 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-CCC
T ss_pred CCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC-ccc
Confidence 3444444443 46678889999999998887743 688999999999999998887777899999999999999 555
Q ss_pred ccc-ccccCCcCCCEEeccCCCCc--ccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccc----eeeeeccc
Q 046742 453 QLP-SGISRLVSLQHLNLSLTNIK--ELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLY----ILRIVDCH 521 (769)
Q Consensus 453 ~lp-~~i~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~----~L~l~~~~ 521 (769)
.+| ..++++.+|++|++++|.+. .+|..++++++|++|++++|. +..++...++.+.+|+ +|++++|.
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l~~n~ 192 (606)
T 3vq2_A 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLNP 192 (606)
T ss_dssp CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEECTTCC
T ss_pred cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccceeeccCCC
Confidence 554 67899999999999999887 578889999999999999886 4555443354444433 45554444
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=1e-20 Score=212.86 Aligned_cols=143 Identities=21% Similarity=0.186 Sum_probs=81.0
Q ss_pred EEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCCCCc
Q 046742 396 RMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNIK 475 (769)
Q Consensus 396 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~ 475 (769)
++++++|.++.+|.... ++|++|++++|.++.+++..|..+++|++|++++|...+..|..++++++|++|++++|+++
T Consensus 4 ~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp EEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred eEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 45666666665554221 56666666666666666555666666666666666322223556666666666666666666
Q ss_pred ccchhhhcCCCCcEEecCCCcCcC-ccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCC--cEEEEEecc
Q 046742 476 ELPEELKALVNLKCLNLDYTKSLC-RIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENL--NVLGINLTS 551 (769)
Q Consensus 476 ~lp~~~~~l~~L~~L~l~~~~~l~-~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~ 551 (769)
.+|.. .+++|++|++++|.... .+|.. ++++++|++|++++|.+... .+..+++| +.|+++.+.
T Consensus 83 ~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~~---------~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 83 KISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEKS---------SVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp EEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCGG---------GGGGGTTSCEEEEEEEECT
T ss_pred ecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccchh---------hccccccceeeEEEeeccc
Confidence 66655 56666666666665322 23443 66666666666666554321 13344444 666665544
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=1.8e-21 Score=227.42 Aligned_cols=290 Identities=17% Similarity=0.200 Sum_probs=175.5
Q ss_pred CCCCCCccEEEccCCCCcc------------------cchhh-hcCCCcceEEEecCCCCCccccccccCCcCCCEEecc
Q 046742 410 IPSCPSLITLFLNNNNLKV------------------ITDGF-FQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLS 470 (769)
Q Consensus 410 ~~~~~~L~~L~l~~~~~~~------------------~~~~~-~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~ 470 (769)
+.++++|++|++++|.++. +|+.+ |..+++|++|+|++|...+.+|..++++++|++|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 5677888888888888877 66652 2378888888888886677788888888888888888
Q ss_pred CCC-Ccc--cchhhhcCC-------CCcEEecCCCcCcCccCc--ccccCCcccceeeeeccccccccchhhhHHHHhhc
Q 046742 471 LTN-IKE--LPEELKALV-------NLKCLNLDYTKSLCRIPR--HLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLL 538 (769)
Q Consensus 471 ~~~-l~~--lp~~~~~l~-------~L~~L~l~~~~~l~~~p~--~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 538 (769)
+|+ ++. +|..++++. +|++|++++|. +..+|. . ++++++|++|++++|.+. .++ .+..
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~-l~~L~~L~~L~Ls~N~l~-~lp-------~~~~ 593 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASAS-LQKMVKLGLLDCVHNKVR-HLE-------AFGT 593 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHH-HTTCTTCCEEECTTSCCC-BCC-------CCCT
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhh-hhcCCCCCEEECCCCCcc-cch-------hhcC
Confidence 886 774 777777665 88888888886 457777 5 788888888888887765 333 3566
Q ss_pred CcCCcEEEEEeccchhhhhhhcccccccc-cceeeecccCCCccccccCcccc--cCCCeEEEeccCCcc----------
Q 046742 539 MENLNVLGINLTSSHALSKFLSSHRIQSY-ILHLRLELLEDSRSLNVLPLANI--KNLESLGFRNCEKLE---------- 605 (769)
Q Consensus 539 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-l~~L~l~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~l~---------- 605 (769)
+++|+.|+++.+....++..+. .... |+.|.+.+..-. .+. ..+..+ ++|+.|+++++....
T Consensus 594 L~~L~~L~Ls~N~l~~lp~~l~---~l~~~L~~L~Ls~N~L~-~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIEEIPEDFC---AFTDQVEGLGFSHNKLK-YIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp TSEESEEECCSSCCSCCCTTSC---EECTTCCEEECCSSCCC-SCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred CCcceEEECcCCccccchHHHh---hccccCCEEECcCCCCC-cCc-hhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 7778888887766554433211 1123 555555543321 111 012222 347777777653221
Q ss_pred --------eEEeccccccccccccccCc---cccccccEEEEecCcCCccccc-cc--------ccCCccEEEEeecCcc
Q 046742 606 --------ELKIEIGNIQQNVCVSQVHG---FQFHSLYYVVVSDCNKLRNLSW-LG--------LAPNLLTIDILRCPEI 665 (769)
Q Consensus 606 --------~l~~~~~~~~~~~~~~~~~~---~~~~~L~~L~l~~c~~l~~l~~-l~--------~l~~L~~L~l~~c~~l 665 (769)
.+.++.+.+. .++. ..+++|+.|++++| .++.++. +. .+++|+.|++++| .+
T Consensus 669 ~~~~~~L~~L~Ls~N~L~------~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L 740 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQ------KFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KL 740 (876)
T ss_dssp TCCCCCEEEEECCSSCCC------SCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CC
T ss_pred cccCCCcCEEEccCCcCC------ccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CC
Confidence 1111111110 0110 12344555555544 2233321 11 1124555555443 22
Q ss_pred hhhcccccCCccccccCCc--cccccceecccccccccccCCCCCCCCCccEEEecC-------------------CCCC
Q 046742 666 EEISGQYSGEVPEMMRNLN--PFARLELLILETLPKLKSIYPNALPFLHLKEIKVSN-------------------CPEL 724 (769)
Q Consensus 666 ~~l~~~~~~~~~~~~~~~~--~l~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~-------------------c~~L 724 (769)
+.++. .+. .+++|+.|+|++ +.+..+|.....+++|+.|++++ |++|
T Consensus 741 ~~lp~-----------~l~~~~l~~L~~L~Ls~-N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 741 TSLSD-----------DFRATTLPYLSNMDVSY-NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808 (876)
T ss_dssp CCCCG-----------GGSTTTCTTCCEEECCS-SCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred ccchH-----------HhhhccCCCcCEEEeCC-CCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCC
Confidence 22221 232 678888888888 46667777777888888887743 5678
Q ss_pred CCCCCCCCCC
Q 046742 725 KKLPLDSNSA 734 (769)
Q Consensus 725 ~~L~l~~n~~ 734 (769)
+.|++++|.+
T Consensus 809 ~~L~Ls~N~L 818 (876)
T 4ecn_A 809 IQLQIGSNDI 818 (876)
T ss_dssp CEEECCSSCC
T ss_pred CEEECCCCCC
Confidence 8888888887
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=8.4e-21 Score=213.67 Aligned_cols=141 Identities=23% Similarity=0.315 Sum_probs=113.8
Q ss_pred EEEecCCccccCCCCCcceeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCC
Q 046742 374 FFVQAGARLTEAPETGKWQVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSL 451 (769)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 451 (769)
.+..++..++.+|..-. +++++|++++|.+..++. +.++++|++|++++|.++.+++..|..+++|++|+|++| .+
T Consensus 4 ~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l 81 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KL 81 (520)
T ss_dssp EEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CC
T ss_pred eEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ce
Confidence 34445556666664322 789999999999988753 789999999999999999997777999999999999999 67
Q ss_pred ccccccccCCcCCCEEeccCCCCcc--cchhhhcCCCCcEEecCCCcCcCccCcccccCCccc--ceeeeecccc
Q 046742 452 KQLPSGISRLVSLQHLNLSLTNIKE--LPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSML--YILRIVDCHY 522 (769)
Q Consensus 452 ~~lp~~i~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L--~~L~l~~~~~ 522 (769)
+.+|.. .+.+|++|++++|.++. +|..++++++|++|++++|. +... .+..+++| ++|++++|.+
T Consensus 82 ~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 82 VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred eecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEEEeecccc
Confidence 788877 89999999999999985 67889999999999999986 3331 25566666 7777777655
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=224.21 Aligned_cols=173 Identities=17% Similarity=0.225 Sum_probs=134.8
Q ss_pred eEEEecCCccccCCCCCcceeEEEEeeccccccccc--CCCCCCCccEEEccCC-CCcccchhhhcCCCcceEEEecCCC
Q 046742 373 SFFVQAGARLTEAPETGKWQVIRRMSLMENQVQSLS--KIPSCPSLITLFLNNN-NLKVITDGFFQFMPSLKVLNLSNNQ 449 (769)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~~~ 449 (769)
..+...+..++.+|. ..+++++|++++|.++.++ .+.++++|++|++++| .+..+++..|.++++|++|+|++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 456667778888887 5679999999999998764 4899999999999999 4567767779999999999999995
Q ss_pred CCccccccccCCcCCCEEeccCCCCcc-cchh--hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeecccccccc
Q 046742 450 SLKQLPSGISRLVSLQHLNLSLTNIKE-LPEE--LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEV 526 (769)
Q Consensus 450 ~~~~lp~~i~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 526 (769)
.....|..++++.+|++|++++|.+.. +|.. ++++++|++|++++|......+...++++++|++|++++|.+....
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 445558899999999999999999985 6665 8999999999999998544334344899999999999998875544
Q ss_pred chhhhHHHHhhcCcCCcEEEEEecc
Q 046742 527 ENCEVLMEEVLLMENLNVLGINLTS 551 (769)
Q Consensus 527 ~~~~~~~~~l~~l~~L~~L~l~~~~ 551 (769)
+.... .+.. ++|+.|+++.+.
T Consensus 165 ~~~l~---~l~~-~~L~~L~L~~n~ 185 (844)
T 3j0a_A 165 EHELE---PLQG-KTLSFFSLAANS 185 (844)
T ss_dssp SGGGH---HHHH-CSSCCCEECCSB
T ss_pred HHHcc---cccC-CccceEECCCCc
Confidence 32211 1111 556666665443
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=2.1e-20 Score=202.16 Aligned_cols=294 Identities=19% Similarity=0.262 Sum_probs=222.5
Q ss_pred EEecCCccccCCC--CCcceeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCC
Q 046742 375 FVQAGARLTEAPE--TGKWQVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQS 450 (769)
Q Consensus 375 ~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 450 (769)
+...+..+..+|. +..+++|++|++.+|.+..++. +..+++|++|++++|.++.+++..|+.+++|++|++++| .
T Consensus 50 l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 128 (390)
T 3o6n_A 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-D 128 (390)
T ss_dssp EEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-c
Confidence 3334445555554 4567899999999999988754 789999999999999999999888999999999999999 7
Q ss_pred Ccccccc-ccCCcCCCEEeccCCCCcccch-hhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccch
Q 046742 451 LKQLPSG-ISRLVSLQHLNLSLTNIKELPE-ELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVEN 528 (769)
Q Consensus 451 ~~~lp~~-i~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 528 (769)
++.+|.. +.++++|++|++++|.+..++. .++.+++|++|++++|. +..++ ++.+++|++|++++|.+...
T Consensus 129 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n~l~~~--- 201 (390)
T 3o6n_A 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLLSTL--- 201 (390)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSSCCSEE---
T ss_pred cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeeccccccccc---
Confidence 7788876 5899999999999999998765 48999999999999997 56665 56789999999998865432
Q ss_pred hhhHHHHhhcCcCCcEEEEEeccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEE
Q 046742 529 CEVLMEEVLLMENLNVLGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELK 608 (769)
Q Consensus 529 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~ 608 (769)
...++|+.|+++.+....++. .....++.|.+.+.. ......+..+++|++|+++++. ++.++
T Consensus 202 --------~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~---l~~~~~l~~l~~L~~L~Ls~n~-l~~~~ 264 (390)
T 3o6n_A 202 --------AIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNN---LTDTAWLLNYPGLVEVDLSYNE-LEKIM 264 (390)
T ss_dssp --------ECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSC---CCCCGGGGGCTTCSEEECCSSC-CCEEE
T ss_pred --------CCCCcceEEECCCCeeeeccc-----cccccccEEECCCCC---CcccHHHcCCCCccEEECCCCc-CCCcC
Confidence 234578888888766554432 122356666665532 2222347788999999999864 44443
Q ss_pred eccccccccccccccCccccccccEEEEecCcCCccccc-ccccCCccEEEEeecCcchhhcccccCCccccccCCcccc
Q 046742 609 IEIGNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLSW-LGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFA 687 (769)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~ 687 (769)
.... ..+++|+.|+++++ .++.++. ...+++|++|+++++ .++.++. .+..++
T Consensus 265 ~~~~-------------~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-----------~~~~l~ 318 (390)
T 3o6n_A 265 YHPF-------------VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVER-----------NQPQFD 318 (390)
T ss_dssp SGGG-------------TTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGG-----------GHHHHT
T ss_pred hhHc-------------cccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCc-----------cccccC
Confidence 2221 24789999999988 5566543 456899999999986 4544433 345689
Q ss_pred ccceecccccccccccCCCCCCCCCccEEEecCCC
Q 046742 688 RLELLILETLPKLKSIYPNALPFLHLKEIKVSNCP 722 (769)
Q Consensus 688 ~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~c~ 722 (769)
+|+.|+++++ .+..++ ...+++|+.|++++++
T Consensus 319 ~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 319 RLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp TCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred cCCEEECCCC-ccceeC--chhhccCCEEEcCCCC
Confidence 9999999994 577776 4568999999999753
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=209.02 Aligned_cols=280 Identities=18% Similarity=0.206 Sum_probs=213.9
Q ss_pred EEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCCCCc
Q 046742 396 RMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNIK 475 (769)
Q Consensus 396 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~ 475 (769)
.++..++.++.+|.. -.+++++|++++|.++.+++..|..+++|++|+|++|......|..+.++++|++|++++|.++
T Consensus 15 ~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 15 AVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp EEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 566677777777762 2368999999999999998888999999999999999444444888999999999999999999
Q ss_pred ccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEeccchh
Q 046742 476 ELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTSSHA 554 (769)
Q Consensus 476 ~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 554 (769)
.+|.. ++++++|++|++++|. +..++...+.++++|++|++++|.+....+ ..+..+++|+.|+++.+....
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISH------RAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECT------TSSTTCTTCCEEEEESCCCSS
T ss_pred ccCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeCh------hhccCCCCCCEEECCCCcCcc
Confidence 99876 7899999999999997 566655558999999999999988765443 345678889988888554332
Q ss_pred hhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccCccccccccEE
Q 046742 555 LSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSLYYV 634 (769)
Q Consensus 555 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 634 (769)
++. ..+.++++|+.|+++++. +..++.... ..+++|+.|
T Consensus 167 ~~~---------------------------~~l~~l~~L~~L~l~~n~-i~~~~~~~~-------------~~l~~L~~L 205 (477)
T 2id5_A 167 IPT---------------------------EALSHLHGLIVLRLRHLN-INAIRDYSF-------------KRLYRLKVL 205 (477)
T ss_dssp CCH---------------------------HHHTTCTTCCEEEEESCC-CCEECTTCS-------------CSCTTCCEE
T ss_pred cCh---------------------------hHhcccCCCcEEeCCCCc-CcEeChhhc-------------ccCccccee
Confidence 110 115567899999998864 443332111 247899999
Q ss_pred EEecCcCCccccc-ccccCCccEEEEeecCcchhhcccccCCccccccCCccccccceecccccccccccCCC-CCCCCC
Q 046742 635 VVSDCNKLRNLSW-LGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKLKSIYPN-ALPFLH 712 (769)
Q Consensus 635 ~l~~c~~l~~l~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~~~ 712 (769)
++++|..+..++. .....+|++|++++| .++.++. ..+..+++|+.|+|+++ .+..++.. ...+++
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~----------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 273 (477)
T 2id5_A 206 EISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPY----------LAVRHLVYLRFLNLSYN-PISTIEGSMLHELLR 273 (477)
T ss_dssp EEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCH----------HHHTTCTTCCEEECCSS-CCCEECTTSCTTCTT
T ss_pred eCCCCccccccCcccccCccccEEECcCC-cccccCH----------HHhcCccccCeeECCCC-cCCccChhhcccccc
Confidence 9999987776643 444569999999986 3444432 13567899999999984 56777653 556889
Q ss_pred ccEEEec-------------CCCCCCCCCCCCCCCCC
Q 046742 713 LKEIKVS-------------NCPELKKLPLDSNSAKG 736 (769)
Q Consensus 713 L~~L~i~-------------~c~~L~~L~l~~n~~~~ 736 (769)
|+.|+++ +|++|+.|++++|.++.
T Consensus 274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp CCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred CCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 9999876 46899999999998654
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=1.1e-20 Score=216.92 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=109.3
Q ss_pred CCCcceeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc-cccccCCcC
Q 046742 387 ETGKWQVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL-PSGISRLVS 463 (769)
Q Consensus 387 ~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~ 463 (769)
.+..+++|++|++++|.+..+.. +.++++|++|++++|.++.+++..|+.+++|++|++++| .+..+ |..++++++
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~ 130 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKT 130 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTT
T ss_pred HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc-CcccCCcchhccCCc
Confidence 45677889999999998877633 788999999999999998887777899999999999999 55554 667889999
Q ss_pred CCEEeccCCCCcccc-hhhhcCCCCcEEecCCCcCcCccCcccccCCcccc--eeeeeccccccc
Q 046742 464 LQHLNLSLTNIKELP-EELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLY--ILRIVDCHYFEE 525 (769)
Q Consensus 464 L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~--~L~l~~~~~~~~ 525 (769)
|++|++++|.+..++ ..+..+++|++|++++|. +..++...++.+++|+ .|++++|.+...
T Consensus 131 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~ 194 (606)
T 3t6q_A 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194 (606)
T ss_dssp CCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred ccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCccCcc
Confidence 999999999888763 234448999999999886 5666555588888888 788888776443
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=1.4e-20 Score=219.05 Aligned_cols=171 Identities=22% Similarity=0.235 Sum_probs=138.2
Q ss_pred EEEecCCccccCCCCCcceeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCC
Q 046742 374 FFVQAGARLTEAPETGKWQVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSL 451 (769)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 451 (769)
.+...+..+..+|..- .+++++|++++|.++.++. +.++++|++|++++|.++.+++..|..+++|++|++++| .+
T Consensus 8 ~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l 85 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-EL 85 (680)
T ss_dssp EEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CC
T ss_pred eeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-cc
Confidence 4555566677676432 2689999999999988775 788999999999999999998888999999999999999 67
Q ss_pred ccccc-cccCCcCCCEEeccCCCCcccc-hhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchh
Q 046742 452 KQLPS-GISRLVSLQHLNLSLTNIKELP-EELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENC 529 (769)
Q Consensus 452 ~~lp~-~i~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 529 (769)
..+|. .++++.+|++|++++|.+..+| ..++++++|++|++++|. +...+...++++++|++|++++|.+....+
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-- 162 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKS-- 162 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCH--
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCH--
Confidence 77776 5999999999999999999887 469999999999999997 455555458899999999999987655433
Q ss_pred hhHHHHh--hcCcCCcEEEEEeccch
Q 046742 530 EVLMEEV--LLMENLNVLGINLTSSH 553 (769)
Q Consensus 530 ~~~~~~l--~~l~~L~~L~l~~~~~~ 553 (769)
..+ ..+++|+.|+++.+...
T Consensus 163 ----~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 163 ----EELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp ----HHHGGGTTCEESEEECTTCCCC
T ss_pred ----HHhhccccccccEEECCCCccc
Confidence 222 24577888888765443
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=214.58 Aligned_cols=134 Identities=24% Similarity=0.296 Sum_probs=112.4
Q ss_pred CCCcceeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccc-cccCCcC
Q 046742 387 ETGKWQVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPS-GISRLVS 463 (769)
Q Consensus 387 ~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~ 463 (769)
.+..+++|++|++++|.+..++. +.++++|++|++++|.++.+++..|..+++|++|++++| .+..+|. .++++.+
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKT 125 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTT
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCcccccccc
Confidence 46678899999999999888754 788999999999999999998888999999999999999 6767665 6899999
Q ss_pred CCEEeccCCCCcc--cchhhhcCCCCcEEecCCCcCcCccCcccccCCccc----ceeeeecccc
Q 046742 464 LQHLNLSLTNIKE--LPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSML----YILRIVDCHY 522 (769)
Q Consensus 464 L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L----~~L~l~~~~~ 522 (769)
|++|++++|.+.. +|..++++++|++|++++|. +..++...++.+++| +.|++++|.+
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCc
Confidence 9999999999885 78899999999999999996 566655446777777 6777776654
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=1.9e-20 Score=207.03 Aligned_cols=322 Identities=16% Similarity=0.151 Sum_probs=218.2
Q ss_pred EEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc-cccccCCcCCCEEeccCCCC
Q 046742 396 RMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL-PSGISRLVSLQHLNLSLTNI 474 (769)
Q Consensus 396 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~~~l 474 (769)
.++..++.++.+|.++ ++|++|++++|.++.+++..|..+++|++|++++|.....+ |..+.++++|++|++++|.+
T Consensus 14 ~~~c~~~~l~~lp~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 14 NAICINRGLHQVPELP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp EEECCSSCCSSCCCCC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred ccCcCCCCcccCCCCC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 4666777888888743 89999999999999997777999999999999999555466 56799999999999999999
Q ss_pred ccc-chhhhcCCCCcEEecCCCcCcCccC-cccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEeccc
Q 046742 475 KEL-PEELKALVNLKCLNLDYTKSLCRIP-RHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTSS 552 (769)
Q Consensus 475 ~~l-p~~~~~l~~L~~L~l~~~~~l~~~p-~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 552 (769)
..+ |..++++++|++|++++|.....+| ...+.++++|++|++++|.+....+. ..+..+++|+.|+++.+..
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA-----SFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC-----GGGGGCTTCCEEECTTCCB
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc-----cccCCCCcccEEeCCCCcc
Confidence 976 7789999999999999997443333 33478999999999999987665441 1267889999999987765
Q ss_pred hhhhhhhcccccccccceeeecccCCCccccc-------cCcccccCCCeEEEeccC----------------CcceEEe
Q 046742 553 HALSKFLSSHRIQSYILHLRLELLEDSRSLNV-------LPLANIKNLESLGFRNCE----------------KLEELKI 609 (769)
Q Consensus 553 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-------~~l~~l~~L~~L~l~~~~----------------~l~~l~~ 609 (769)
..........-....+..|.+....-...... ..+..+++|++|+++++. .++.+..
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 43322111000112444444443321111000 012244678888887763 2333322
Q ss_pred ccccccc---------cccccccCccccccccEEEEecCcCCccc-ccccccCCccEEEEeecCcchhhcccccCCcccc
Q 046742 610 EIGNIQQ---------NVCVSQVHGFQFHSLYYVVVSDCNKLRNL-SWLGLAPNLLTIDILRCPEIEEISGQYSGEVPEM 679 (769)
Q Consensus 610 ~~~~~~~---------~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 679 (769)
+.+.... ............++|+.|+++++.-...+ ..+..+++|++|+++++. ++.+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--------- 316 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDD--------- 316 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECT---------
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccCh---------
Confidence 2211100 00001111223478999999988433322 237788999999998764 333322
Q ss_pred ccCCccccccceecccccccccccCC-CCCCCCCccEEEecC-------------CCCCCCCCCCCCCCCC
Q 046742 680 MRNLNPFARLELLILETLPKLKSIYP-NALPFLHLKEIKVSN-------------CPELKKLPLDSNSAKG 736 (769)
Q Consensus 680 ~~~~~~l~~L~~L~l~~c~~L~~~~~-~~~~~~~L~~L~i~~-------------c~~L~~L~l~~n~~~~ 736 (769)
..+..+++|+.|+++++ .+..++. ....+++|++|++++ +++|+.|++++|.++.
T Consensus 317 -~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 317 -NAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp -TTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred -hHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence 25667899999999995 6666644 456789999998874 5789999999998765
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=4.4e-20 Score=209.58 Aligned_cols=142 Identities=25% Similarity=0.366 Sum_probs=116.3
Q ss_pred eEEEecCCccccCCCCCcceeEEEEeeccccccccc--CCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCC
Q 046742 373 SFFVQAGARLTEAPETGKWQVIRRMSLMENQVQSLS--KIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQS 450 (769)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 450 (769)
..+..++..++.+|... .+++++|++++|.+..++ .+.++++|++|++++|.++.+++..|..+++|++|+|++| .
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~ 111 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-R 111 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-C
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-c
Confidence 44556666777776532 368999999999998876 4889999999999999999998888999999999999999 6
Q ss_pred CccccccccCCcCCCEEeccCCCCcccc--hhhhcCCCCcEEecCCCcCcCccCcccccCCccc--ceeeeecccc
Q 046742 451 LKQLPSGISRLVSLQHLNLSLTNIKELP--EELKALVNLKCLNLDYTKSLCRIPRHLISNFSML--YILRIVDCHY 522 (769)
Q Consensus 451 ~~~lp~~i~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L--~~L~l~~~~~ 522 (769)
++.+|.. .+.+|++|++++|++..+| ..++++++|++|++++|. +...+ +..+++| ++|++++|.+
T Consensus 112 l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 112 LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccc
Confidence 7788877 8999999999999998764 789999999999999987 34332 4455555 8888888765
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=4e-20 Score=211.10 Aligned_cols=294 Identities=19% Similarity=0.257 Sum_probs=221.9
Q ss_pred EEecCCccccCCC--CCcceeEEEEeeccccccccc--CCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCC
Q 046742 375 FVQAGARLTEAPE--TGKWQVIRRMSLMENQVQSLS--KIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQS 450 (769)
Q Consensus 375 ~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 450 (769)
+...+..+..+|. +..+++|+.|++.+|.+..++ .+..+++|++|++++|.++.+++..|+.+++|++|+|++| .
T Consensus 56 l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 134 (597)
T 3oja_B 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-D 134 (597)
T ss_dssp EEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-C
Confidence 3344444555554 356779999999999998876 4789999999999999999999988999999999999999 6
Q ss_pred Ccccccc-ccCCcCCCEEeccCCCCcccch-hhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccch
Q 046742 451 LKQLPSG-ISRLVSLQHLNLSLTNIKELPE-ELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVEN 528 (769)
Q Consensus 451 ~~~lp~~-i~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 528 (769)
+..+|.. ++++++|++|++++|.+..+|. .++.+++|++|++++|. +..++ ++.+++|++|++++|.+...
T Consensus 135 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~l~~l--- 207 (597)
T 3oja_B 135 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLLSTL--- 207 (597)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSCCSEE---
T ss_pred CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCccccc---
Confidence 7788766 5899999999999999997765 59999999999999997 66665 56789999999998865432
Q ss_pred hhhHHHHhhcCcCCcEEEEEeccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEE
Q 046742 529 CEVLMEEVLLMENLNVLGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELK 608 (769)
Q Consensus 529 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~ 608 (769)
...++|+.|+++.+....++.. ....+..|.+.+.. ......+..+++|+.|+++++. +..++
T Consensus 208 --------~~~~~L~~L~ls~n~l~~~~~~-----~~~~L~~L~L~~n~---l~~~~~l~~l~~L~~L~Ls~N~-l~~~~ 270 (597)
T 3oja_B 208 --------AIPIAVEELDASHNSINVVRGP-----VNVELTILKLQHNN---LTDTAWLLNYPGLVEVDLSYNE-LEKIM 270 (597)
T ss_dssp --------ECCTTCSEEECCSSCCCEEECS-----CCSCCCEEECCSSC---CCCCGGGGGCTTCSEEECCSSC-CCEEE
T ss_pred --------cCCchhheeeccCCcccccccc-----cCCCCCEEECCCCC---CCCChhhccCCCCCEEECCCCc-cCCCC
Confidence 2345788888887765544321 12356666665533 2222347788999999999865 44333
Q ss_pred eccccccccccccccCccccccccEEEEecCcCCccccc-ccccCCccEEEEeecCcchhhcccccCCccccccCCcccc
Q 046742 609 IEIGNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLSW-LGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFA 687 (769)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~ 687 (769)
.... ..+++|+.|++++| .++.++. ...+++|+.|++++|. +..++. .+..++
T Consensus 271 ~~~~-------------~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~-----------~~~~l~ 324 (597)
T 3oja_B 271 YHPF-------------VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVER-----------NQPQFD 324 (597)
T ss_dssp SGGG-------------TTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGG-----------GHHHHT
T ss_pred HHHh-------------cCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCc-----------ccccCC
Confidence 2221 24789999999987 5566544 4568999999998863 444432 456789
Q ss_pred ccceecccccccccccCCCCCCCCCccEEEecCCC
Q 046742 688 RLELLILETLPKLKSIYPNALPFLHLKEIKVSNCP 722 (769)
Q Consensus 688 ~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~c~ 722 (769)
+|+.|++++| .+..++ ...+++|+.|++++++
T Consensus 325 ~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 325 RLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp TCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence 9999999994 566665 4567899999999864
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=3.3e-20 Score=194.91 Aligned_cols=108 Identities=20% Similarity=0.316 Sum_probs=84.4
Q ss_pred CCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCCCCcccchhhhcCCCCcEEec
Q 046742 413 CPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNIKELPEELKALVNLKCLNL 492 (769)
Q Consensus 413 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l 492 (769)
..+++.|++++|.++.+|+. +..+++|++|+|++| .+..+|..++++.+|++|++++|.++.+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 46778888888888888776 566888888888888 5558888888888888888888888888888888888888888
Q ss_pred CCCcCcCccCccccc---------CCcccceeeeeccccc
Q 046742 493 DYTKSLCRIPRHLIS---------NFSMLYILRIVDCHYF 523 (769)
Q Consensus 493 ~~~~~l~~~p~~~i~---------~L~~L~~L~l~~~~~~ 523 (769)
++|+.++.+|.. +. ++++|++|++++|.+.
T Consensus 158 ~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~ 196 (328)
T 4fcg_A 158 RACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR 196 (328)
T ss_dssp EEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC
T ss_pred CCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC
Confidence 888777788775 33 3666666666665443
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=2.2e-19 Score=213.48 Aligned_cols=152 Identities=16% Similarity=0.197 Sum_probs=128.3
Q ss_pred EEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc-cccccCCcCCCEEeccCCC
Q 046742 395 RRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL-PSGISRLVSLQHLNLSLTN 473 (769)
Q Consensus 395 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 473 (769)
+..+.++++++.+|. -.++|++|++++|.++.+++..|..+++|++|+|++|.....+ |..+.++++|++|++++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 456777888888988 5689999999999999998777999999999999999767777 7789999999999999999
Q ss_pred Cccc-chhhhcCCCCcEEecCCCcCcCccCc-ccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEecc
Q 046742 474 IKEL-PEELKALVNLKCLNLDYTKSLCRIPR-HLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTS 551 (769)
Q Consensus 474 l~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 551 (769)
+..+ |..++++++|++|++++|.....+|. ..++++++|++|++++|.+....+. ..+..+++|+.|+++.+.
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~-----~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH-----PSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC-----GGGGTCSSCCEEEEESSC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc-----hhHhhCCCCCEEECCCCc
Confidence 9976 77899999999999999975444443 3488999999999999987654321 347889999999999876
Q ss_pred ch
Q 046742 552 SH 553 (769)
Q Consensus 552 ~~ 553 (769)
..
T Consensus 160 i~ 161 (844)
T 3j0a_A 160 IF 161 (844)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=4.9e-19 Score=200.98 Aligned_cols=146 Identities=18% Similarity=0.280 Sum_probs=121.4
Q ss_pred eEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc-cccccCCcCCCEEeccC
Q 046742 393 VIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL-PSGISRLVSLQHLNLSL 471 (769)
Q Consensus 393 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~ 471 (769)
..++++++++.++.+|... .++|++|++++|.++.+++..|..+++|++|+|++| .++.+ |..+.++++|++|++++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTT
T ss_pred CCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCC
Confidence 4488999999999988732 389999999999999999878999999999999999 55554 77899999999999999
Q ss_pred CCCcccchhhhcCCCCcEEecCCCcCcCccCc-ccccCCcccceeeeeccccccccchhhhHHHHhhcCcCC--cEEEEE
Q 046742 472 TNIKELPEELKALVNLKCLNLDYTKSLCRIPR-HLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENL--NVLGIN 548 (769)
Q Consensus 472 ~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L--~~L~l~ 548 (769)
|.++.+|.. .+++|++|++++|. +..+|. ..++++++|++|++++|.+... .+..+++| +.|+++
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---------~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQL---------DLLPVAHLHLSCILLD 177 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTT---------TTGGGTTSCEEEEEEE
T ss_pred CcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccccC---------chhhhhhceeeEEEee
Confidence 999999987 89999999999997 566542 3399999999999999876432 23344455 899988
Q ss_pred eccc
Q 046742 549 LTSS 552 (769)
Q Consensus 549 ~~~~ 552 (769)
.+..
T Consensus 178 ~n~l 181 (562)
T 3a79_B 178 LVSY 181 (562)
T ss_dssp ESSC
T ss_pred cccc
Confidence 7654
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=1.4e-19 Score=205.28 Aligned_cols=159 Identities=18% Similarity=0.193 Sum_probs=126.2
Q ss_pred CCCcceeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCc--cccccccCCc
Q 046742 387 ETGKWQVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLK--QLPSGISRLV 462 (769)
Q Consensus 387 ~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~--~lp~~i~~l~ 462 (769)
.+..+++|++|++++|.+..++. +.++++|++|++++|.++.+++..|+.+++|++|++++| .+. ..|..+++++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLT 123 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccC
Confidence 46778899999999999988764 789999999999999999999888999999999999999 454 4567899999
Q ss_pred CCCEEeccCCC-Ccccc-hhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCc
Q 046742 463 SLQHLNLSLTN-IKELP-EELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLME 540 (769)
Q Consensus 463 ~L~~L~l~~~~-l~~lp-~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~ 540 (769)
+|++|++++|. +..+| ..++++++|++|++++|......|.. ++.+++|++|+++.|....... .....++
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~------~~~~~l~ 196 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSESAFLLE------IFADILS 196 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBSTTHHH------HHHHSTT
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCcccccch------hhHhhcc
Confidence 99999999997 67787 46999999999999999754445655 8888888888888765422111 1123466
Q ss_pred CCcEEEEEeccch
Q 046742 541 NLNVLGINLTSSH 553 (769)
Q Consensus 541 ~L~~L~l~~~~~~ 553 (769)
+|+.|+++.+...
T Consensus 197 ~L~~L~L~~n~l~ 209 (549)
T 2z81_A 197 SVRYLELRDTNLA 209 (549)
T ss_dssp TBSEEEEESCBCT
T ss_pred cccEEEccCCccc
Confidence 6777776655443
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=3.1e-19 Score=188.19 Aligned_cols=242 Identities=19% Similarity=0.214 Sum_probs=161.2
Q ss_pred ceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEecc
Q 046742 391 WQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLS 470 (769)
Q Consensus 391 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~ 470 (769)
..+++.+++.++.++.+|... .+.|++|++++|.++.+++..|..+++|++|++++|......|..+.++++|++|+++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 347888999988888877522 3689999999999999988779999999999999994444448889999999999999
Q ss_pred CCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEec
Q 046742 471 LTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLT 550 (769)
Q Consensus 471 ~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 550 (769)
+|.++.+|..+. ++|++|++++|. +..++...+.++++|++|++++|.+..... ....+..+++|+.|+++.+
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGI----ENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGB----CTTGGGGCTTCCEEECCSS
T ss_pred CCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCc----ChhhccCCCCcCEEECCCC
Confidence 999999987765 799999999996 677777778999999999999887643111 1134677888998888766
Q ss_pred cchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccCcccccc
Q 046742 551 SSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHS 630 (769)
Q Consensus 551 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 630 (769)
....++... ...++.|.+.+..- .......+..+++|++|+++++. ++.++.... ..+++
T Consensus 182 ~l~~l~~~~-----~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-------------~~l~~ 241 (330)
T 1xku_A 182 NITTIPQGL-----PPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSL-------------ANTPH 241 (330)
T ss_dssp CCCSCCSSC-----CTTCSEEECTTSCC-CEECTGGGTTCTTCCEEECCSSC-CCEECTTTG-------------GGSTT
T ss_pred ccccCCccc-----cccCCEEECCCCcC-CccCHHHhcCCCCCCEEECCCCc-CceeChhhc-------------cCCCC
Confidence 554433211 12344444433211 11111124455566666665542 332221111 12455
Q ss_pred ccEEEEecCcCCcccc-cccccCCccEEEEee
Q 046742 631 LYYVVVSDCNKLRNLS-WLGLAPNLLTIDILR 661 (769)
Q Consensus 631 L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~ 661 (769)
|+.|++++| .++.++ .+..+++|++|++++
T Consensus 242 L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 242 LRELHLNNN-KLVKVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp CCEEECCSS-CCSSCCTTTTTCSSCCEEECCS
T ss_pred CCEEECCCC-cCccCChhhccCCCcCEEECCC
Confidence 666666655 333432 355556666666654
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=2.3e-19 Score=208.82 Aligned_cols=329 Identities=18% Similarity=0.151 Sum_probs=208.7
Q ss_pred EEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCCCC
Q 046742 395 RRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNI 474 (769)
Q Consensus 395 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l 474 (769)
+.++.+++.++.+|... .+++++|++++|.++.+++..|..+++|++|++++|...+..|..++++++|++|++++|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 35777888888887632 27999999999999999988899999999999999955555577899999999999999999
Q ss_pred cccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEeccch
Q 046742 475 KELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTSSH 553 (769)
Q Consensus 475 ~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 553 (769)
+.+|.. ++++++|++|++++|. +..+|...++++++|++|++++|.+....+ ..+..+++|+.|+++.+...
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKL------GTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCC------CSSSCCTTCCEEECCSSCCC
T ss_pred CccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCc------hhhcccccCCEEEccCCccc
Confidence 999984 9999999999999997 677776669999999999999998765544 23567899999999877654
Q ss_pred hhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEecc----------------CCcceEEecccccccc
Q 046742 554 ALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNC----------------EKLEELKIEIGNIQQN 617 (769)
Q Consensus 554 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~----------------~~l~~l~~~~~~~~~~ 617 (769)
..............++.|.+.+..- .......+..+++|+.|.+.++ ..++.+..+.+.....
T Consensus 159 ~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 237 (680)
T 1ziw_A 159 ALKSEELDIFANSSLKKLELSSNQI-KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237 (680)
T ss_dssp CBCHHHHGGGTTCEESEEECTTCCC-CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred ccCHHHhhccccccccEEECCCCcc-cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc
Confidence 4322111001113555555544321 1111111334445555544332 2233333332221110
Q ss_pred ccccccCccccccccEEEEecCcCCccc--ccccccCCccEEEEeecCcchhhcccccC---------------------
Q 046742 618 VCVSQVHGFQFHSLYYVVVSDCNKLRNL--SWLGLAPNLLTIDILRCPEIEEISGQYSG--------------------- 674 (769)
Q Consensus 618 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l--~~l~~l~~L~~L~l~~c~~l~~l~~~~~~--------------------- 674 (769)
.+ ..+.....++|+.|++++|. ++.+ ..++.+++|++|+++++. +..+.....+
T Consensus 238 ~~-~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 314 (680)
T 1ziw_A 238 SN-TTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314 (680)
T ss_dssp CT-TTTGGGGGSCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSCC-BSEECTTTTTTCTTCCEEECTTCBCCC----
T ss_pred Ch-hHhhccCcCCCCEEECCCCC-cCccCcccccCcccccEeeCCCCc-cCccChhhhcCCCCccEEeccchhhhccccc
Confidence 00 00001112336666666652 3332 124556666666665542 2211110000
Q ss_pred -Cccc-cccCCccccccceecccccccccccCC-CCCCCCCccEEEecCC-----------------CCCCCCCCCCCCC
Q 046742 675 -EVPE-MMRNLNPFARLELLILETLPKLKSIYP-NALPFLHLKEIKVSNC-----------------PELKKLPLDSNSA 734 (769)
Q Consensus 675 -~~~~-~~~~~~~l~~L~~L~l~~c~~L~~~~~-~~~~~~~L~~L~i~~c-----------------~~L~~L~l~~n~~ 734 (769)
.+|. ....+..+++|+.|+++++ .+..++. ....+++|+.|++++| ++|+.|++++|.+
T Consensus 315 ~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l 393 (680)
T 1ziw_A 315 ASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393 (680)
T ss_dssp --CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC
T ss_pred ccccccChhhcccCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC
Confidence 0111 0014566788888888884 4555543 3566888999998876 3788888888887
Q ss_pred CC
Q 046742 735 KG 736 (769)
Q Consensus 735 ~~ 736 (769)
++
T Consensus 394 ~~ 395 (680)
T 1ziw_A 394 SK 395 (680)
T ss_dssp CE
T ss_pred Ce
Confidence 64
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=5.8e-20 Score=191.80 Aligned_cols=135 Identities=19% Similarity=0.291 Sum_probs=98.1
Q ss_pred eeEEEEeeccccccc---ccC-CCCCCCccEEEccC-CCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCE
Q 046742 392 QVIRRMSLMENQVQS---LSK-IPSCPSLITLFLNN-NNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQH 466 (769)
Q Consensus 392 ~~l~~L~l~~~~~~~---~~~-~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 466 (769)
.+++.|++.+|.+.. +|. +.++++|++|++++ |.+....+..|..+++|++|++++|...+.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 367888888887763 433 67788888888884 6666444444777888888888888444477777888888888
Q ss_pred EeccCCCCc-ccchhhhcCCCCcEEecCCCcCcCccCcccccCCc-ccceeeeeccccccccc
Q 046742 467 LNLSLTNIK-ELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFS-MLYILRIVDCHYFEEVE 527 (769)
Q Consensus 467 L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~-~L~~L~l~~~~~~~~~~ 527 (769)
|++++|.+. .+|..++.+++|++|++++|.....+|.. +..++ +|++|++++|.+....+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~ 191 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP 191 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCC
Confidence 888888777 67777888888888888888754467766 67776 78888888776654443
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=8.2e-20 Score=194.52 Aligned_cols=273 Identities=21% Similarity=0.195 Sum_probs=159.7
Q ss_pred EeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc-cccccCCcCCCEEeccCCCCc
Q 046742 397 MSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL-PSGISRLVSLQHLNLSLTNIK 475 (769)
Q Consensus 397 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~ 475 (769)
.+.+++.++.+|.. -.++|++|++++|.++.++...|..+++|++|++++| .++.+ |..+.++++|++|++++|+++
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 45556666666541 1246777777777777776656777777777777777 34443 455777777777777777777
Q ss_pred ccchh-hhcCCCCcEEecCCCcCcCccCc-ccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEeccch
Q 046742 476 ELPEE-LKALVNLKCLNLDYTKSLCRIPR-HLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTSSH 553 (769)
Q Consensus 476 ~lp~~-~~~l~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 553 (769)
.+|.. ++++++|++|++++|. +..+|. ..+.++++|++|++++|.....++. ..+..+++|+.|+++.+...
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-----~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-----KDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-----TTTTTCCEEEEEEEEETTCC
T ss_pred cCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCH-----HHccCCCCCCEEECCCCCcC
Confidence 77665 6777777777777775 556665 4466777777777777643332210 23455666666666644322
Q ss_pred hhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccCccccccccE
Q 046742 554 ALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSLYY 633 (769)
Q Consensus 554 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 633 (769)
... ...+..+++|++|+++++. ++.++.... ..+++|+.
T Consensus 188 ~~~---------------------------~~~l~~l~~L~~L~l~~n~-l~~~~~~~~-------------~~~~~L~~ 226 (353)
T 2z80_A 188 SYE---------------------------PKSLKSIQNVSHLILHMKQ-HILLLEIFV-------------DVTSSVEC 226 (353)
T ss_dssp EEC---------------------------TTTTTTCSEEEEEEEECSC-STTHHHHHH-------------HHTTTEEE
T ss_pred ccC---------------------------HHHHhccccCCeecCCCCc-cccchhhhh-------------hhcccccE
Confidence 110 0113455667777776644 332222111 12566777
Q ss_pred EEEecCcCCcccc-----cccccCCccEEEEeecCcchhhcccccCCccccccCCccccccceecccccccccccCCCCC
Q 046742 634 VVVSDCNKLRNLS-----WLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKLKSIYPNAL 708 (769)
Q Consensus 634 L~l~~c~~l~~l~-----~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~ 708 (769)
|+++++ .++..+ .....+.++.+.++++. +... ....+| ..+..+++|+.|++++ +.++++|...
T Consensus 227 L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~---~l~~l~---~~l~~l~~L~~L~Ls~-N~l~~i~~~~- 296 (353)
T 2z80_A 227 LELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVK-ITDE---SLFQVM---KLLNQISGLLELEFSR-NQLKSVPDGI- 296 (353)
T ss_dssp EEEESC-BCTTCCCC------CCCCCCEEEEESCB-CCHH---HHHHHH---HHHHTCTTCCEEECCS-SCCCCCCTTT-
T ss_pred EECCCC-ccccccccccccccccchhhcccccccc-ccCc---chhhhH---HHHhcccCCCEEECCC-CCCCccCHHH-
Confidence 777766 333321 12335567777776542 1110 000111 1355688999999998 4777777542
Q ss_pred CCCCccEEEecCCCCCCCCCCCCCCCCCc
Q 046742 709 PFLHLKEIKVSNCPELKKLPLDSNSAKGH 737 (769)
Q Consensus 709 ~~~~L~~L~i~~c~~L~~L~l~~n~~~~~ 737 (769)
+.++++|+.|++++|.+++.
T Consensus 297 ---------~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 297 ---------FDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp ---------TTTCTTCCEEECCSSCBCCC
T ss_pred ---------HhcCCCCCEEEeeCCCccCc
Confidence 25677888888888887753
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=4.2e-19 Score=187.30 Aligned_cols=294 Identities=17% Similarity=0.136 Sum_probs=197.2
Q ss_pred eeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccC
Q 046742 392 QVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSL 471 (769)
Q Consensus 392 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~ 471 (769)
.+++.+++.++.++.+|... .++|++|++++|.++.+++..|..+++|++|++++|......|..++++++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 46888999998888877632 47899999999999998887789999999999999944434477899999999999999
Q ss_pred CCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeecccccc--ccchhhhHHHHhhcCcCCcEEEEEe
Q 046742 472 TNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFE--EVENCEVLMEEVLLMENLNVLGINL 549 (769)
Q Consensus 472 ~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~--~~~~~~~~~~~l~~l~~L~~L~l~~ 549 (769)
|.++.+|..+. ++|++|++++|. +..+|...+.++++|++|++++|.+.. ..+ ..+..+ +|+.|+++.
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP------GAFDGL-KLNYLRISE 181 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT------TSSCSC-CCSCCBCCS
T ss_pred CcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCc------ccccCC-ccCEEECcC
Confidence 99999988765 899999999997 677887778999999999999887643 211 223444 777777776
Q ss_pred ccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccCccccc
Q 046742 550 TSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFH 629 (769)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 629 (769)
+....++... ...++.|.+.+..- .......+..+++|++|+++++. ++.++.... ..++
T Consensus 182 n~l~~l~~~~-----~~~L~~L~l~~n~i-~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~-------------~~l~ 241 (332)
T 2ft3_A 182 AKLTGIPKDL-----PETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSL-------------SFLP 241 (332)
T ss_dssp SBCSSCCSSS-----CSSCSCCBCCSSCC-CCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGG-------------GGCT
T ss_pred CCCCccCccc-----cCCCCEEECCCCcC-CccCHHHhcCCCCCCEEECCCCc-CCcCChhHh-------------hCCC
Confidence 6655443321 13555555544221 11111236677888888888753 443322111 2468
Q ss_pred cccEEEEecCcCCcccc-cccccCCccEEEEeecCcchhhcccccCCccccccCCccccccceeccccccccc-ccCCCC
Q 046742 630 SLYYVVVSDCNKLRNLS-WLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKLK-SIYPNA 707 (769)
Q Consensus 630 ~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~-~~~~~~ 707 (769)
+|+.|++++| .++.++ .+..+++|+.|+++++ .++.++........ ....+++|+.|++++++... .++..
T Consensus 242 ~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~----~~~~~~~l~~L~l~~N~~~~~~~~~~- 314 (332)
T 2ft3_A 242 TLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVG----FGVKRAYYNGISLFNNPVPYWEVQPA- 314 (332)
T ss_dssp TCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSS----CCSSSCCBSEEECCSSSSCGGGSCGG-
T ss_pred CCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChhHccccc----cccccccccceEeecCcccccccCcc-
Confidence 8999999887 555664 3778889999999874 45555432221110 11236778888888865321 22221
Q ss_pred CCCCCccEEEecCCCCCCCCCCCCC
Q 046742 708 LPFLHLKEIKVSNCPELKKLPLDSN 732 (769)
Q Consensus 708 ~~~~~L~~L~i~~c~~L~~L~l~~n 732 (769)
.+.+|++|+.+.+++|
T Consensus 315 ---------~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 315 ---------TFRCVTDRLAIQFGNY 330 (332)
T ss_dssp ---------GGTTBCCSTTEEC---
T ss_pred ---------cccccchhhhhhcccc
Confidence 2345666666666665
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=2.7e-19 Score=187.87 Aligned_cols=226 Identities=25% Similarity=0.332 Sum_probs=144.5
Q ss_pred CCCcceEEEecCCCCCccccccccCCcCCCEEeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCccccee
Q 046742 436 FMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYIL 515 (769)
Q Consensus 436 ~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L 515 (769)
...++++|+|++| .++.+|..++++.+|++|++++|.++.+|..++++++|++|++++|. +..+|.. ++++++|++|
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~-l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPAS-IASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGG-GGGCTTCCEE
T ss_pred cccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHH-HhcCcCCCEE
Confidence 3578999999999 77899999999999999999999999999999999999999999997 5689987 8999999999
Q ss_pred eeeccccccccchhhh---HHHHhhcCcCCcEEEEEeccchhhhhhhcccccccccceeeecccCCCccccccCcccccC
Q 046742 516 RIVDCHYFEEVENCEV---LMEEVLLMENLNVLGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKN 592 (769)
Q Consensus 516 ~l~~~~~~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~ 592 (769)
++++|.....++.... ....+..+++|+.|+++.+....++ ..+..+++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp----------------------------~~l~~l~~ 207 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP----------------------------ASIANLQN 207 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC----------------------------GGGGGCTT
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch----------------------------HhhcCCCC
Confidence 9999887666552110 0011223555555555533222111 01344556
Q ss_pred CCeEEEeccCCcceEEeccccccccccccccCccccccccEEEEecCcCCcccc-cccccCCccEEEEeecCcchhhccc
Q 046742 593 LESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLS-WLGLAPNLLTIDILRCPEIEEISGQ 671 (769)
Q Consensus 593 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~l~~~ 671 (769)
|++|+++++. +..++..+ ..+++|+.|++++|.....++ .++.+++|++|++++|..+..++.
T Consensus 208 L~~L~L~~N~-l~~l~~~l--------------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~- 271 (328)
T 4fcg_A 208 LKSLKIRNSP-LSALGPAI--------------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL- 271 (328)
T ss_dssp CCEEEEESSC-CCCCCGGG--------------GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT-
T ss_pred CCEEEccCCC-CCcCchhh--------------ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch-
Confidence 6666666543 22222211 124566666666655444443 255566666666666554443322
Q ss_pred ccCCccccccCCccccccceecccccccccccCCCCCCCCCccEEEe
Q 046742 672 YSGEVPEMMRNLNPFARLELLILETLPKLKSIYPNALPFLHLKEIKV 718 (769)
Q Consensus 672 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i 718 (769)
.+..+++|+.|+|++|+.+..+|.....+++|+.+.+
T Consensus 272 ----------~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 272 ----------DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp ----------TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred ----------hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 3445566666666666666666654444444444433
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=2.2e-18 Score=198.99 Aligned_cols=147 Identities=25% Similarity=0.288 Sum_probs=123.5
Q ss_pred EEecCCccccCCCCCcceeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCc
Q 046742 375 FVQAGARLTEAPETGKWQVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLK 452 (769)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 452 (769)
+.+.+.++..+|.. -.+++++|++++|.++.++. +.++++|++|++++|.++.++++.|..+++|++|+|++| .++
T Consensus 36 ~~c~~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~ 113 (635)
T 4g8a_A 36 YQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQ 113 (635)
T ss_dssp EECTTSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCC
T ss_pred EECCCCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCC
Confidence 34455667766642 12479999999999999874 789999999999999999999988999999999999999 677
Q ss_pred cccc-cccCCcCCCEEeccCCCCcccchh-hhcCCCCcEEecCCCcCcC-ccCcccccCCcccceeeeecccccc
Q 046742 453 QLPS-GISRLVSLQHLNLSLTNIKELPEE-LKALVNLKCLNLDYTKSLC-RIPRHLISNFSMLYILRIVDCHYFE 524 (769)
Q Consensus 453 ~lp~-~i~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~-~~p~~~i~~L~~L~~L~l~~~~~~~ 524 (769)
.+|. .|.++.+|++|++++|+++.+|.. ++++++|++|++++|.... .+|.. ++.+++|++|++++|.+..
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccccc
Confidence 7775 589999999999999999998875 8999999999999997422 34554 8899999999999987644
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=4.4e-18 Score=196.46 Aligned_cols=126 Identities=25% Similarity=0.316 Sum_probs=107.2
Q ss_pred EEecCCccccCC--CCCcceeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCC
Q 046742 375 FVQAGARLTEAP--ETGKWQVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQS 450 (769)
Q Consensus 375 ~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 450 (769)
..-+...++.++ .+..+++|++|++++|.++.++. +.++++|++|+|++|.++.+++..|.++++|++|+|++| .
T Consensus 57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N-~ 135 (635)
T 4g8a_A 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-N 135 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS-C
T ss_pred EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC-c
Confidence 344555566654 46788899999999999998875 789999999999999999999988999999999999999 6
Q ss_pred Cccccc-cccCCcCCCEEeccCCCCc--ccchhhhcCCCCcEEecCCCcCcCccC
Q 046742 451 LKQLPS-GISRLVSLQHLNLSLTNIK--ELPEELKALVNLKCLNLDYTKSLCRIP 502 (769)
Q Consensus 451 ~~~lp~-~i~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~p 502 (769)
++.+|. .++++++|++|++++|.+. .+|..++.+++|++|++++|. +..++
T Consensus 136 l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 189 (635)
T 4g8a_A 136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIY 189 (635)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEEC
T ss_pred CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccc
Confidence 667765 5899999999999999987 467889999999999999986 44444
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=1.3e-17 Score=183.88 Aligned_cols=236 Identities=21% Similarity=0.232 Sum_probs=148.4
Q ss_pred EEecCCccccCCCCCcceeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCc
Q 046742 375 FVQAGARLTEAPETGKWQVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLK 452 (769)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 452 (769)
+...+..+..+|.. -.+++++|++++|.++.++. +.++++|++|++++|.++.+++..|..+++|++|+|++| .++
T Consensus 59 v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~ 136 (452)
T 3zyi_A 59 VVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLT 136 (452)
T ss_dssp EECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCS
T ss_pred EEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCC
Confidence 33344455555431 22467777777777766532 677777777777777777777666777777777777777 455
Q ss_pred cccc-cccCCcCCCEEeccCCCCcccch-hhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhh
Q 046742 453 QLPS-GISRLVSLQHLNLSLTNIKELPE-ELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCE 530 (769)
Q Consensus 453 ~lp~-~i~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 530 (769)
.+|. .+..+++|++|++++|.+..+|. .+.++++|+.|++++|+.+..+|...+.++++|++|++++|.+... +
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~--- 212 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P--- 212 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C---
T ss_pred ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c---
Confidence 5554 36777777777777777777665 3677777777777776667777776677777777777777765432 1
Q ss_pred hHHHHhhcCcCCcEEEEEeccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEec
Q 046742 531 VLMEEVLLMENLNVLGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIE 610 (769)
Q Consensus 531 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~ 610 (769)
.+..+++|+.|+++.+....+ ....+.++++|++|+++++. +..++..
T Consensus 213 ----~~~~l~~L~~L~Ls~N~l~~~---------------------------~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 260 (452)
T 3zyi_A 213 ----NLTPLVGLEELEMSGNHFPEI---------------------------RPGSFHGLSSLKKLWVMNSQ-VSLIERN 260 (452)
T ss_dssp ----CCTTCTTCCEEECTTSCCSEE---------------------------CGGGGTTCTTCCEEECTTSC-CCEECTT
T ss_pred ----cccccccccEEECcCCcCccc---------------------------CcccccCccCCCEEEeCCCc-CceECHH
Confidence 134455555555543222111 00124566777888877643 4433222
Q ss_pred cccccccccccccCccccccccEEEEecCcCCccccc--ccccCCccEEEEeec
Q 046742 611 IGNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLSW--LGLAPNLLTIDILRC 662 (769)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c 662 (769)
.. ..+++|+.|+++++ .++.++. +..+++|+.|+++++
T Consensus 261 ~~-------------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 261 AF-------------DGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TT-------------TTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSS
T ss_pred Hh-------------cCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCC
Confidence 11 23677888888777 5555543 456777778777653
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=2.9e-17 Score=180.19 Aligned_cols=141 Identities=26% Similarity=0.326 Sum_probs=71.0
Q ss_pred eeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccC
Q 046742 392 QVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSL 471 (769)
Q Consensus 392 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~ 471 (769)
+++++|++++|.+..++... ++|++|++++|.++.+|. |+.+++|++|++++| .++.+|..+ .+|++|++++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp~--~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~ 182 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGN 182 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCS
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCcc--cCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcC
Confidence 34555555555444443322 455555555555555542 555555555555555 344444332 3555555555
Q ss_pred CCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEecc
Q 046742 472 TNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTS 551 (769)
Q Consensus 472 ~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 551 (769)
|.++.+| .++++++|++|++++|. +..+|.. ..+|++|++++|.+. .++ .+..+++|+.|+++.+.
T Consensus 183 n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~----~~~L~~L~l~~n~l~-~lp-------~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 183 NQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL----PLSLESIVAGNNILE-ELP-------ELQNLPFLTTIYADNNL 248 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC----CTTCCEEECCSSCCS-SCC-------CCTTCTTCCEEECCSSC
T ss_pred CcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC----cCcccEEECcCCcCC-ccc-------ccCCCCCCCEEECCCCc
Confidence 5555555 35555555555555554 3344432 135555555555443 222 13455666666666554
Q ss_pred chh
Q 046742 552 SHA 554 (769)
Q Consensus 552 ~~~ 554 (769)
...
T Consensus 249 l~~ 251 (454)
T 1jl5_A 249 LKT 251 (454)
T ss_dssp CSS
T ss_pred CCc
Confidence 443
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=1.4e-17 Score=173.49 Aligned_cols=125 Identities=22% Similarity=0.265 Sum_probs=95.0
Q ss_pred EEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc---cccccCCcCCCEEeccCC
Q 046742 396 RMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL---PSGISRLVSLQHLNLSLT 472 (769)
Q Consensus 396 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l---p~~i~~l~~L~~L~l~~~ 472 (769)
.++..++.++.+|.. -.++|++|++++|.++.++...|..+++|++|++++| .+..+ |..+..+.+|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCC
Confidence 456666777776652 2367888888888888888877888888888888888 44433 566777888888888888
Q ss_pred CCcccchhhhcCCCCcEEecCCCcCcCccCc-ccccCCcccceeeeeccccc
Q 046742 473 NIKELPEELKALVNLKCLNLDYTKSLCRIPR-HLISNFSMLYILRIVDCHYF 523 (769)
Q Consensus 473 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~ 523 (769)
.+..+|..+..+++|++|++++|. +..++. ..+..+++|++|++++|.+.
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~ 139 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTR 139 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCE
T ss_pred ccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCC
Confidence 888888888888888888888886 555554 34778888888888877653
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.74 E-value=1.8e-17 Score=174.81 Aligned_cols=246 Identities=18% Similarity=0.248 Sum_probs=172.4
Q ss_pred CCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc-cccccCCcCCCEEeccCCCCccc-chhhhcCCCCcEEe
Q 046742 414 PSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL-PSGISRLVSLQHLNLSLTNIKEL-PEELKALVNLKCLN 491 (769)
Q Consensus 414 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~ 491 (769)
.++++++++++.++.+|... .++|++|++++| .+..+ |..+.++++|++|++++|+++.+ |..++++++|++|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC---CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCccccCCCC---CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 37999999999999998763 368999999999 56565 56899999999999999999977 67799999999999
Q ss_pred cCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEeccchhhhhhhccccccccccee
Q 046742 492 LDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTSSHALSKFLSSHRIQSYILHL 571 (769)
Q Consensus 492 l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L 571 (769)
+++|. +..+|.. +. ++|++|++++|.+....+ ..+..+++|+.|+++.+............... .++.|
T Consensus 109 L~~n~-l~~l~~~-~~--~~L~~L~l~~n~i~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 109 ISKNH-LVEIPPN-LP--SSLVELRIHDNRIRKVPK------GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp CCSSC-CCSCCSS-CC--TTCCEEECCSSCCCCCCS------GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred CCCCc-CCccCcc-cc--ccCCEEECCCCccCccCH------hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 99997 6788886 33 899999999988765433 33678899999999877654321111111111 34444
Q ss_pred eecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccCccccccccEEEEecCcCCcccc--ccc
Q 046742 572 RLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLS--WLG 649 (769)
Q Consensus 572 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~ 649 (769)
.+.+. .... .|..-.++|++|+++++. ++.++.... ..+++|+.|+++++ .++.++ .+.
T Consensus 178 ~l~~n---~l~~-l~~~~~~~L~~L~l~~n~-i~~~~~~~l-------------~~l~~L~~L~L~~N-~l~~~~~~~~~ 238 (332)
T 2ft3_A 178 RISEA---KLTG-IPKDLPETLNELHLDHNK-IQAIELEDL-------------LRYSKLYRLGLGHN-QIRMIENGSLS 238 (332)
T ss_dssp BCCSS---BCSS-CCSSSCSSCSCCBCCSSC-CCCCCTTSS-------------TTCTTCSCCBCCSS-CCCCCCTTGGG
T ss_pred ECcCC---CCCc-cCccccCCCCEEECCCCc-CCccCHHHh-------------cCCCCCCEEECCCC-cCCcCChhHhh
Confidence 44332 2211 222223678888887753 332221111 24678889999887 455543 477
Q ss_pred ccCCccEEEEeecCcchhhcccccCCccccccCCccccccceecccccccccccCCC
Q 046742 650 LAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKLKSIYPN 706 (769)
Q Consensus 650 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~ 706 (769)
.+++|+.|+++++ .++.++. .+..+++|+.|++++ +.++.++..
T Consensus 239 ~l~~L~~L~L~~N-~l~~lp~-----------~l~~l~~L~~L~l~~-N~l~~~~~~ 282 (332)
T 2ft3_A 239 FLPTLRELHLDNN-KLSRVPA-----------GLPDLKLLQVVYLHT-NNITKVGVN 282 (332)
T ss_dssp GCTTCCEEECCSS-CCCBCCT-----------TGGGCTTCCEEECCS-SCCCBCCTT
T ss_pred CCCCCCEEECCCC-cCeecCh-----------hhhcCccCCEEECCC-CCCCccChh
Confidence 8889999999875 3444432 456788899999988 567777654
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=182.12 Aligned_cols=236 Identities=21% Similarity=0.266 Sum_probs=152.8
Q ss_pred EEecCCccccCCCCCcceeEEEEeeccccccccc--CCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCc
Q 046742 375 FVQAGARLTEAPETGKWQVIRRMSLMENQVQSLS--KIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLK 452 (769)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 452 (769)
+...+..+..+|.. -.++++.|++++|.+..++ .+.++++|++|++++|.++.+++..|..+++|++|+|++| .++
T Consensus 48 v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~ 125 (440)
T 3zyj_A 48 VICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLT 125 (440)
T ss_dssp EECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCS
T ss_pred EEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCC
Confidence 33444455555532 2246777788877777664 3677778888888888777777777777888888888887 555
Q ss_pred cccc-cccCCcCCCEEeccCCCCcccch-hhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhh
Q 046742 453 QLPS-GISRLVSLQHLNLSLTNIKELPE-ELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCE 530 (769)
Q Consensus 453 ~lp~-~i~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 530 (769)
.+|. .+..+.+|++|++++|.+..+|. .+.++++|++|++++|+.+..++...+.++++|++|++++|.+... +
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~--- 201 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P--- 201 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C---
T ss_pred eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c---
Confidence 5554 57777888888888887777665 4677788888888777667777776677788888888877765432 1
Q ss_pred hHHHHhhcCcCCcEEEEEeccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEec
Q 046742 531 VLMEEVLLMENLNVLGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIE 610 (769)
Q Consensus 531 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~ 610 (769)
.+..+++|+.|+++.+.... .....+.++++|++|+++++ .++.++..
T Consensus 202 ----~~~~l~~L~~L~Ls~N~l~~---------------------------~~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 249 (440)
T 3zyj_A 202 ----NLTPLIKLDELDLSGNHLSA---------------------------IRPGSFQGLMHLQKLWMIQS-QIQVIERN 249 (440)
T ss_dssp ----CCTTCSSCCEEECTTSCCCE---------------------------ECTTTTTTCTTCCEEECTTC-CCCEECTT
T ss_pred ----ccCCCcccCEEECCCCccCc---------------------------cChhhhccCccCCEEECCCC-ceeEEChh
Confidence 13455555555554322211 11122556778888888764 34433322
Q ss_pred cccccccccccccCccccccccEEEEecCcCCccccc--ccccCCccEEEEeec
Q 046742 611 IGNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLSW--LGLAPNLLTIDILRC 662 (769)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c 662 (769)
.. ..+++|+.|+++++ .++.++. +..+++|+.|+++++
T Consensus 250 ~~-------------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 250 AF-------------DNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp SS-------------TTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred hh-------------cCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCC
Confidence 21 23677888888877 5555543 566778888887653
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.74 E-value=1.1e-17 Score=174.62 Aligned_cols=247 Identities=17% Similarity=0.163 Sum_probs=181.7
Q ss_pred CCccEEEccCCCCcc---cchhhhcCCCcceEEEecC-CCCCccccccccCCcCCCEEeccCCCCc-ccchhhhcCCCCc
Q 046742 414 PSLITLFLNNNNLKV---ITDGFFQFMPSLKVLNLSN-NQSLKQLPSGISRLVSLQHLNLSLTNIK-ELPEELKALVNLK 488 (769)
Q Consensus 414 ~~L~~L~l~~~~~~~---~~~~~~~~l~~L~~L~L~~-~~~~~~lp~~i~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~ 488 (769)
.+++.|++++|.+.. +|. .+..+++|++|++++ |...+.+|..++++++|++|++++|.+. .+|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 689999999999985 554 589999999999995 7566689999999999999999999998 8999999999999
Q ss_pred EEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCc-CCcEEEEEeccchhhhhhhcccccccc
Q 046742 489 CLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLME-NLNVLGINLTSSHALSKFLSSHRIQSY 567 (769)
Q Consensus 489 ~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~ 567 (769)
+|++++|.....+|.. +..+++|++|++++|.+....+ ..+..++ +|+.|+++.+......
T Consensus 129 ~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p------~~l~~l~~~L~~L~L~~N~l~~~~----------- 190 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIP------DSYGSFSKLFTSMTISRNRLTGKI----------- 190 (313)
T ss_dssp EEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEECC------GGGGCCCTTCCEEECCSSEEEEEC-----------
T ss_pred EEeCCCCccCCcCChH-HhcCCCCCeEECcCCcccCcCC------HHHhhhhhcCcEEECcCCeeeccC-----------
Confidence 9999999855577876 8999999999999998875555 3456666 7888877644322100
Q ss_pred cceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccCccccccccEEEEecCcCCccccc
Q 046742 568 ILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLSW 647 (769)
Q Consensus 568 l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 647 (769)
...+..++ |++|+++++. ++...... ...+++|+.|+++++.--..++.
T Consensus 191 ----------------~~~~~~l~-L~~L~Ls~N~-l~~~~~~~-------------~~~l~~L~~L~L~~N~l~~~~~~ 239 (313)
T 1ogq_A 191 ----------------PPTFANLN-LAFVDLSRNM-LEGDASVL-------------FGSDKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp ----------------CGGGGGCC-CSEEECCSSE-EEECCGGG-------------CCTTSCCSEEECCSSEECCBGGG
T ss_pred ----------------ChHHhCCc-ccEEECcCCc-ccCcCCHH-------------HhcCCCCCEEECCCCceeeecCc
Confidence 01134444 9999998864 32211111 12478999999999855445566
Q ss_pred ccccCCccEEEEeecCcchhhcccccCCccccccCCccccccceecccccccccccCCCCCCCCCccEEEecCCCCCCCC
Q 046742 648 LGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKLKSIYPNALPFLHLKEIKVSNCPELKKL 727 (769)
Q Consensus 648 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~c~~L~~L 727 (769)
+..+++|++|+++++.--..++. .+..+++|+.|+++++.--..+|.. ..+++|+.+
T Consensus 240 ~~~l~~L~~L~Ls~N~l~~~~p~-----------~l~~l~~L~~L~Ls~N~l~~~ip~~------------~~l~~L~~l 296 (313)
T 1ogq_A 240 VGLSKNLNGLDLRNNRIYGTLPQ-----------GLTQLKFLHSLNVSFNNLCGEIPQG------------GNLQRFDVS 296 (313)
T ss_dssp CCCCTTCCEEECCSSCCEECCCG-----------GGGGCTTCCEEECCSSEEEEECCCS------------TTGGGSCGG
T ss_pred ccccCCCCEEECcCCcccCcCCh-----------HHhcCcCCCEEECcCCcccccCCCC------------ccccccChH
Confidence 78889999999988643222222 5667899999999996444455542 344555556
Q ss_pred CCCCCC
Q 046742 728 PLDSNS 733 (769)
Q Consensus 728 ~l~~n~ 733 (769)
++++|.
T Consensus 297 ~l~~N~ 302 (313)
T 1ogq_A 297 AYANNK 302 (313)
T ss_dssp GTCSSS
T ss_pred HhcCCC
Confidence 666554
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=2.2e-17 Score=181.97 Aligned_cols=243 Identities=19% Similarity=0.228 Sum_probs=165.9
Q ss_pred EEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc-cccccCCcCCCEEeccCC
Q 046742 394 IRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL-PSGISRLVSLQHLNLSLT 472 (769)
Q Consensus 394 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~~ 472 (769)
.+.++..+..++.+|.. -.++|++|++++|.++.+++..|..+++|++|+|++| .+..+ |..+.++.+|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC
Confidence 34567777777777752 2368999999999999998888999999999999999 45444 577899999999999999
Q ss_pred CCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEecc
Q 046742 473 NIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTS 551 (769)
Q Consensus 473 ~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 551 (769)
.++.+|.. ++.+++|++|++++|. +..+|...+.++++|++|++++|.....++. ..
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-----~~---------------- 191 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISE-----GA---------------- 191 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT-----TT----------------
T ss_pred cCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccCh-----hh----------------
Confidence 99988876 7889999999999997 6788887789999999999987654433321 01
Q ss_pred chhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccCccccccc
Q 046742 552 SHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSL 631 (769)
Q Consensus 552 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L 631 (769)
+.++++|++|+++++. ++.++. ...+++|
T Consensus 192 -----------------------------------~~~l~~L~~L~L~~n~-l~~~~~---------------~~~l~~L 220 (452)
T 3zyi_A 192 -----------------------------------FEGLFNLKYLNLGMCN-IKDMPN---------------LTPLVGL 220 (452)
T ss_dssp -----------------------------------TTTCTTCCEEECTTSC-CSSCCC---------------CTTCTTC
T ss_pred -----------------------------------ccCCCCCCEEECCCCc-cccccc---------------ccccccc
Confidence 2334555555555532 222210 0135566
Q ss_pred cEEEEecCcCCccc--ccccccCCccEEEEeecCcchhhcccccCCccccccCCccccccceecccccccccccCCCCCC
Q 046742 632 YYVVVSDCNKLRNL--SWLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKLKSIYPNALP 709 (769)
Q Consensus 632 ~~L~l~~c~~l~~l--~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~ 709 (769)
+.|+++++ .++.+ ..+..+++|+.|+++++. ++.+.. ..+..+++|+.|+|++ +.++.++...
T Consensus 221 ~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~----------~~~~~l~~L~~L~L~~-N~l~~~~~~~-- 285 (452)
T 3zyi_A 221 EELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIER----------NAFDGLASLVELNLAH-NNLSSLPHDL-- 285 (452)
T ss_dssp CEEECTTS-CCSEECGGGGTTCTTCCEEECTTSC-CCEECT----------TTTTTCTTCCEEECCS-SCCSCCCTTS--
T ss_pred cEEECcCC-cCcccCcccccCccCCCEEEeCCCc-CceECH----------HHhcCCCCCCEEECCC-CcCCccChHH--
Confidence 66666665 33333 235566777777776542 333222 2456678888888887 4666666542
Q ss_pred CCCccEEEecCCCCCCCCCCCCCCC
Q 046742 710 FLHLKEIKVSNCPELKKLPLDSNSA 734 (769)
Q Consensus 710 ~~~L~~L~i~~c~~L~~L~l~~n~~ 734 (769)
+..+++|+.|++++|.+
T Consensus 286 --------~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 286 --------FTPLRYLVELHLHHNPW 302 (452)
T ss_dssp --------STTCTTCCEEECCSSCE
T ss_pred --------hccccCCCEEEccCCCc
Confidence 24556666666666654
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=3.7e-17 Score=179.44 Aligned_cols=243 Identities=17% Similarity=0.230 Sum_probs=180.3
Q ss_pred EEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc-cccccCCcCCCEEeccCC
Q 046742 394 IRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL-PSGISRLVSLQHLNLSLT 472 (769)
Q Consensus 394 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~~ 472 (769)
.+.++..+..++.+|... .++++.|++++|.++.+++..|..+++|++|+|++| .+..+ |..+.++.+|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC
Confidence 346677777777777522 368899999999998888777889999999999998 45554 467888999999999999
Q ss_pred CCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEecc
Q 046742 473 NIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTS 551 (769)
Q Consensus 473 ~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 551 (769)
+++.+|.. +..+++|++|++++|. +..+|...+.++++|++|++++|+....++
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~------------------------ 177 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYIS------------------------ 177 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEEC------------------------
T ss_pred cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeC------------------------
Confidence 99888764 8889999999999886 677777668888888888888654332211
Q ss_pred chhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccCccccccc
Q 046742 552 SHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSL 631 (769)
Q Consensus 552 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L 631 (769)
...+.++++|++|+++++ .++.++. ...+++|
T Consensus 178 --------------------------------~~~~~~l~~L~~L~L~~n-~l~~~~~---------------~~~l~~L 209 (440)
T 3zyj_A 178 --------------------------------EGAFEGLSNLRYLNLAMC-NLREIPN---------------LTPLIKL 209 (440)
T ss_dssp --------------------------------TTTTTTCSSCCEEECTTS-CCSSCCC---------------CTTCSSC
T ss_pred --------------------------------cchhhcccccCeecCCCC-cCccccc---------------cCCCccc
Confidence 012456789999999886 3454431 1347899
Q ss_pred cEEEEecCcCCccc--ccccccCCccEEEEeecCcchhhcccccCCccccccCCccccccceecccccccccccCCCCCC
Q 046742 632 YYVVVSDCNKLRNL--SWLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKLKSIYPNALP 709 (769)
Q Consensus 632 ~~L~l~~c~~l~~l--~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~ 709 (769)
+.|+++++ .++.+ ..+..+++|+.|+++++ .++.+.. ..+..+++|+.|+|++ +.++.++...
T Consensus 210 ~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~----------~~~~~l~~L~~L~L~~-N~l~~~~~~~-- 274 (440)
T 3zyj_A 210 DELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIER----------NAFDNLQSLVEINLAH-NNLTLLPHDL-- 274 (440)
T ss_dssp CEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECT----------TSSTTCTTCCEEECTT-SCCCCCCTTT--
T ss_pred CEEECCCC-ccCccChhhhccCccCCEEECCCC-ceeEECh----------hhhcCCCCCCEEECCC-CCCCccChhH--
Confidence 99999998 55555 24778999999999875 3444432 3567789999999999 5788777643
Q ss_pred CCCccEEEecCCCCCCCCCCCCCCC
Q 046742 710 FLHLKEIKVSNCPELKKLPLDSNSA 734 (769)
Q Consensus 710 ~~~L~~L~i~~c~~L~~L~l~~n~~ 734 (769)
+..+++|+.|++++|.+
T Consensus 275 --------~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 275 --------FTPLHHLERIHLHHNPW 291 (440)
T ss_dssp --------TSSCTTCCEEECCSSCE
T ss_pred --------hccccCCCEEEcCCCCc
Confidence 34567777777777765
No 57
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=1.5e-16 Score=167.57 Aligned_cols=246 Identities=15% Similarity=0.195 Sum_probs=153.5
Q ss_pred CCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccc-cccCCcCCCEEeccCCCCccc-chhhhcCCCCcEEe
Q 046742 414 PSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPS-GISRLVSLQHLNLSLTNIKEL-PEELKALVNLKCLN 491 (769)
Q Consensus 414 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~ 491 (769)
.++++++++++.++.+|... .++|++|++++| .++.+|. .+.++++|++|++++|.++.+ |..++.+++|++|+
T Consensus 31 c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC---CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCccccCccC---CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 47999999999999998753 368999999999 5666654 799999999999999999987 77899999999999
Q ss_pred cCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEeccchhhhhhhccccccccccee
Q 046742 492 LDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTSSHALSKFLSSHRIQSYILHL 571 (769)
Q Consensus 492 l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L 571 (769)
+++|. +..+|... .++|++|++++|.+....+ ..+..+++|+.|+++.+.................++.|
T Consensus 107 Ls~n~-l~~l~~~~---~~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 107 LSKNQ-LKELPEKM---PKTLQELRVHENEITKVRK------SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp CCSSC-CSBCCSSC---CTTCCEEECCSSCCCBBCH------HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred CCCCc-CCccChhh---cccccEEECCCCcccccCH------hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 99997 77888763 2799999999988765443 45788999999998866543211111111111233333
Q ss_pred eecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccCccccccccEEEEecCcCCcccc--ccc
Q 046742 572 RLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLS--WLG 649 (769)
Q Consensus 572 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~ 649 (769)
.+.+. .... .+..-.++|++|+++++. ++.++.... ..+++|+.|+++++ .++.++ .+.
T Consensus 177 ~l~~n---~l~~-l~~~~~~~L~~L~l~~n~-l~~~~~~~~-------------~~l~~L~~L~Ls~n-~l~~~~~~~~~ 237 (330)
T 1xku_A 177 RIADT---NITT-IPQGLPPSLTELHLDGNK-ITKVDAASL-------------KGLNNLAKLGLSFN-SISAVDNGSLA 237 (330)
T ss_dssp ECCSS---CCCS-CCSSCCTTCSEEECTTSC-CCEECTGGG-------------TTCTTCCEEECCSS-CCCEECTTTGG
T ss_pred ECCCC---cccc-CCccccccCCEEECCCCc-CCccCHHHh-------------cCCCCCCEEECCCC-cCceeChhhcc
Confidence 33221 1111 111112455555555542 332211111 12456666666655 233332 255
Q ss_pred ccCCccEEEEeecCcchhhcccccCCccccccCCccccccceecccccccccccCC
Q 046742 650 LAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKLKSIYP 705 (769)
Q Consensus 650 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~ 705 (769)
.+++|++|+++++ .++.++. .+..+++|+.|++++ +.++.++.
T Consensus 238 ~l~~L~~L~L~~N-~l~~lp~-----------~l~~l~~L~~L~l~~-N~i~~~~~ 280 (330)
T 1xku_A 238 NTPHLRELHLNNN-KLVKVPG-----------GLADHKYIQVVYLHN-NNISAIGS 280 (330)
T ss_dssp GSTTCCEEECCSS-CCSSCCT-----------TTTTCSSCCEEECCS-SCCCCCCT
T ss_pred CCCCCCEEECCCC-cCccCCh-----------hhccCCCcCEEECCC-CcCCccCh
Confidence 5666666666554 2332221 344456666666665 34555544
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=1.2e-16 Score=180.64 Aligned_cols=74 Identities=14% Similarity=0.109 Sum_probs=38.2
Q ss_pred ccccEEEEecCcCCcccccccccCCccEEEEeecCcchhhcccccCCccccccCCccccccceecccccccccccCCCCC
Q 046742 629 HSLYYVVVSDCNKLRNLSWLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKLKSIYPNAL 708 (769)
Q Consensus 629 ~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~ 708 (769)
++|+.|++++| .++.++ ..+++|+.|+++++ .++.++. .+++|+.|++++| .++.+|....
T Consensus 221 ~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N-~L~~lp~--------------~~~~L~~L~Ls~N-~L~~lp~~l~ 281 (622)
T 3g06_A 221 SGLKELIVSGN-RLTSLP--VLPSELKELMVSGN-RLTSLPM--------------LPSGLLSLSVYRN-QLTRLPESLI 281 (622)
T ss_dssp TTCCEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCCC--------------CCTTCCEEECCSS-CCCSCCGGGG
T ss_pred CCCCEEEccCC-ccCcCC--CCCCcCcEEECCCC-CCCcCCc--------------ccccCcEEeCCCC-CCCcCCHHHh
Confidence 55666666655 444444 34566666666553 2332211 2455666666663 5555555444
Q ss_pred CCCCccEEEecCC
Q 046742 709 PFLHLKEIKVSNC 721 (769)
Q Consensus 709 ~~~~L~~L~i~~c 721 (769)
.+++|+.|+++++
T Consensus 282 ~l~~L~~L~L~~N 294 (622)
T 3g06_A 282 HLSSETTVNLEGN 294 (622)
T ss_dssp GSCTTCEEECCSC
T ss_pred hccccCEEEecCC
Confidence 4455555555444
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=3.5e-18 Score=178.76 Aligned_cols=285 Identities=16% Similarity=0.136 Sum_probs=136.8
Q ss_pred EEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccC
Q 046742 394 IRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSL 471 (769)
Q Consensus 394 l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~ 471 (769)
+...++..+.+...+. +..+++|++|++++|.++.+++..|..+++|++|+|++| .+...+. +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcC
Confidence 3444444444433221 234556666666666666666555666666666666666 3433332 66666666666666
Q ss_pred CCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEecc
Q 046742 472 TNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTS 551 (769)
Q Consensus 472 ~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 551 (769)
|.++.+|. +++|++|++++|. +..++.. .+++|++|++++|.+....+ ..+..+++|+.|+++.+.
T Consensus 90 n~l~~l~~----~~~L~~L~l~~n~-l~~~~~~---~~~~L~~L~l~~N~l~~~~~------~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 90 NYVQELLV----GPSIETLHAANNN-ISRVSCS---RGQGKKNIYLANNKITMLRD------LDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp SEEEEEEE----CTTCCEEECCSSC-CSEEEEC---CCSSCEEEECCSSCCCSGGG------BCTGGGSSEEEEECTTSC
T ss_pred CccccccC----CCCcCEEECCCCc-cCCcCcc---ccCCCCEEECCCCCCCCccc------hhhhccCCCCEEECCCCC
Confidence 66665542 3566666666664 4444432 35556666666665543322 123344555555555433
Q ss_pred chhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccCccccccc
Q 046742 552 SHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSL 631 (769)
Q Consensus 552 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L 631 (769)
......... ......++.|.+.+ +......+...+++|++|+++++ .++.++..+. .+++|
T Consensus 156 l~~~~~~~~-~~~l~~L~~L~L~~---N~l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~--------------~l~~L 216 (317)
T 3o53_A 156 IDTVNFAEL-AASSDTLEHLNLQY---NFIYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQ--------------SAAGV 216 (317)
T ss_dssp CCEEEGGGG-GGGTTTCCEEECTT---SCCCEEECCCCCTTCCEEECCSS-CCCEECGGGG--------------GGTTC
T ss_pred CCcccHHHH-hhccCcCCEEECCC---CcCcccccccccccCCEEECCCC-cCCcchhhhc--------------ccCcc
Confidence 322110000 00001222222222 11111112223566666666654 3443433221 25666
Q ss_pred cEEEEecCcCCcccc-cccccCCccEEEEeecCcc-hhhcccccCCccccccCCccccccceecccccccccccCCCCCC
Q 046742 632 YYVVVSDCNKLRNLS-WLGLAPNLLTIDILRCPEI-EEISGQYSGEVPEMMRNLNPFARLELLILETLPKLKSIYPNALP 709 (769)
Q Consensus 632 ~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l-~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~ 709 (769)
+.|+++++ .++.++ .+..+++|+.|++++++-. ..++ ..+..+++|+.+.+++++.++........
T Consensus 217 ~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~-----------~~~~~~~~L~~l~l~~~~~l~~~~~~~~~ 284 (317)
T 3o53_A 217 TWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLR-----------DFFSKNQRVQTVAKQTVKKLTGQNEEECT 284 (317)
T ss_dssp SEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHH-----------HHHHTCHHHHHHHHHHHHHHHSSSSCCCS
T ss_pred cEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHH-----------HHHhccccceEEECCCchhccCCchhccC
Confidence 77777666 444443 2455666677766654332 1111 13344566666666666666655444333
Q ss_pred CCCccEEEecCCCCCC
Q 046742 710 FLHLKEIKVSNCPELK 725 (769)
Q Consensus 710 ~~~L~~L~i~~c~~L~ 725 (769)
.+.+....-..|..|.
T Consensus 285 ~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 285 VPTLGHYGAYCCEDLP 300 (317)
T ss_dssp STTCEEETTEEEBCCT
T ss_pred CCceecccceeeccCC
Confidence 3333333333444443
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.72 E-value=4.6e-17 Score=169.53 Aligned_cols=146 Identities=26% Similarity=0.290 Sum_probs=120.1
Q ss_pred EEecCCccccCCCCCcceeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccc--hhhhcCCCcceEEEecCCCC
Q 046742 375 FVQAGARLTEAPETGKWQVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVIT--DGFFQFMPSLKVLNLSNNQS 450 (769)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~ 450 (769)
+...+..+..+|. .-.+++++|++.+|.++.++. +.++++|++|++++|.++.+. +..+..+++|++|++++| .
T Consensus 12 l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~ 89 (306)
T 2z66_A 12 IRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-G 89 (306)
T ss_dssp EECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-S
T ss_pred EEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-c
Confidence 3445556666654 233689999999999998886 689999999999999987652 233667999999999999 7
Q ss_pred CccccccccCCcCCCEEeccCCCCcccch--hhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccc
Q 046742 451 LKQLPSGISRLVSLQHLNLSLTNIKELPE--ELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYF 523 (769)
Q Consensus 451 ~~~lp~~i~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 523 (769)
+..+|..+..+++|++|++++|.++.+|. .+..+++|++|++++|. +...+...+.++++|++|++++|.+.
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccc
Confidence 77899889999999999999999998875 68999999999999997 45555545889999999999987643
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=3.1e-17 Score=168.87 Aligned_cols=128 Identities=26% Similarity=0.399 Sum_probs=64.0
Q ss_pred eEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc-cccccCCcCCCEEec
Q 046742 393 VIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL-PSGISRLVSLQHLNL 469 (769)
Q Consensus 393 ~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l 469 (769)
++++|++++|.++.++. +..+++|++|++++|.++.+++..|..+++|++|++++|..++.+ |..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 45555555555544432 445555555555555555554444555555555555555323333 344555555555555
Q ss_pred cCCCCccc-chhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccc
Q 046742 470 SLTNIKEL-PEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCH 521 (769)
Q Consensus 470 ~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 521 (769)
++|.+..+ |..++++++|++|++++|. +..+|...++.+++|++|++++|.
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCc
Confidence 55555544 2334555555555555554 344444334555555555555443
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=2.6e-16 Score=167.33 Aligned_cols=272 Identities=17% Similarity=0.198 Sum_probs=187.7
Q ss_pred CCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccc-cccCCcCCCEEeccCCCCcccc-hhhhcCCCCc
Q 046742 411 PSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPS-GISRLVSLQHLNLSLTNIKELP-EELKALVNLK 488 (769)
Q Consensus 411 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~ 488 (769)
..|+...+.+++++.++.+|.... ++|++|++++| .++.+|. .+.++++|++|++++|.++.++ ..++++++|+
T Consensus 28 ~~C~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CEECTTSEEECCSTTCSSCCTTCC---TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCeEeeCCCCCccccccccc---ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 445566678999999999998632 58999999999 6667765 7999999999999999999875 4599999999
Q ss_pred EEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEecc-chhhhhhhcccccccc
Q 046742 489 CLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTS-SHALSKFLSSHRIQSY 567 (769)
Q Consensus 489 ~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~ 567 (769)
+|++++|. +..+|...++++++|++|++++|.+... +.. ..+..+++|+.|+++.+. ...
T Consensus 104 ~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~----~~~~~l~~L~~L~l~~n~~~~~------------- 164 (353)
T 2z80_A 104 HLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTL-GET----SLFSHLTKLQILRVGNMDTFTK------------- 164 (353)
T ss_dssp EEECCSSC-CSSCCHHHHTTCTTCSEEECTTCCCSSS-CSS----CSCTTCTTCCEEEEEESSSCCE-------------
T ss_pred EEECCCCc-CCcCCHhHhCCCccCCEEECCCCCCccc-Cch----hhhccCCCCcEEECCCCccccc-------------
Confidence 99999997 7788887789999999999999876532 210 135678888888888542 111
Q ss_pred cceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccCccccccccEEEEecCcCCccccc
Q 046742 568 ILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLSW 647 (769)
Q Consensus 568 l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 647 (769)
.....+.++++|++|+++++. +..+..... ..+++|++|+++++. ++.++.
T Consensus 165 --------------~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l-------------~~l~~L~~L~l~~n~-l~~~~~ 215 (353)
T 2z80_A 165 --------------IQRKDFAGLTFLEELEIDASD-LQSYEPKSL-------------KSIQNVSHLILHMKQ-HILLLE 215 (353)
T ss_dssp --------------ECTTTTTTCCEEEEEEEEETT-CCEECTTTT-------------TTCSEEEEEEEECSC-STTHHH
T ss_pred --------------cCHHHccCCCCCCEEECCCCC-cCccCHHHH-------------hccccCCeecCCCCc-cccchh
Confidence 111225667899999999865 443322111 247899999999884 555543
Q ss_pred --ccccCCccEEEEeecCcchhhcccccCCccccccCCccccccceeccccc----ccccccCCCCCCCCCccEEEecCC
Q 046742 648 --LGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETL----PKLKSIYPNALPFLHLKEIKVSNC 721 (769)
Q Consensus 648 --l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c----~~L~~~~~~~~~~~~L~~L~i~~c 721 (769)
+..+++|+.|+++++. ++.+... .+......+.++.+.++++ ..+..+|.....+++|+.|+++++
T Consensus 216 ~~~~~~~~L~~L~L~~n~-l~~~~~~-------~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 216 IFVDVTSSVECLELRDTD-LDTFHFS-------ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp HHHHHTTTEEEEEEESCB-CTTCCCC-------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred hhhhhcccccEEECCCCc-ccccccc-------ccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 4568999999999853 3333211 1111222344555555442 233345555567889999999998
Q ss_pred CCCCCCCCCC--CCCCCcceEEEe
Q 046742 722 PELKKLPLDS--NSAKGHKIVIRG 743 (769)
Q Consensus 722 ~~L~~L~l~~--n~~~~~~~~i~~ 743 (769)
+++.+|..- +.-+++.+.+.+
T Consensus 288 -~l~~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 288 -QLKSVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCS
T ss_pred -CCCccCHHHHhcCCCCCEEEeeC
Confidence 588887642 334455555554
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.69 E-value=3.8e-16 Score=171.26 Aligned_cols=272 Identities=21% Similarity=0.254 Sum_probs=179.9
Q ss_pred eeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccC
Q 046742 392 QVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSL 471 (769)
Q Consensus 392 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~ 471 (769)
+++++|++.+|.++.+|.+.++++|++|++++|.++.+|.. ..+|++|++++| .+..+| .++++++|++|++++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCC-cCCcCc-cccCCCCCCEEECCC
Confidence 58999999999999999999999999999999999988763 358999999999 677788 699999999999999
Q ss_pred CCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEecc
Q 046742 472 TNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTS 551 (769)
Q Consensus 472 ~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 551 (769)
|.++.+|... .+|++|++++|. +..+|. ++.+++|++|++++|.+.. ++. .+++|+.|+++.+.
T Consensus 205 N~l~~l~~~~---~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~l~~N~l~~-l~~---------~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 205 NSLKKLPDLP---LSLESIVAGNNI-LEELPE--LQNLPFLTTIYADNNLLKT-LPD---------LPPSLEALNVRDNY 268 (454)
T ss_dssp SCCSSCCCCC---TTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCSS-CCS---------CCTTCCEEECCSSC
T ss_pred CcCCcCCCCc---CcccEEECcCCc-CCcccc--cCCCCCCCEEECCCCcCCc-ccc---------cccccCEEECCCCc
Confidence 9999887643 599999999996 678885 8999999999999987654 221 24788999888776
Q ss_pred chhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccCccccccc
Q 046742 552 SHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSL 631 (769)
Q Consensus 552 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L 631 (769)
...++.. ...++.|.+.+.. ......+ .++|++|+++++. ++.++ . ..++|
T Consensus 269 l~~l~~~------~~~L~~L~ls~N~---l~~l~~~--~~~L~~L~l~~N~-l~~i~----~-------------~~~~L 319 (454)
T 1jl5_A 269 LTDLPEL------PQSLTFLDVSENI---FSGLSEL--PPNLYYLNASSNE-IRSLC----D-------------LPPSL 319 (454)
T ss_dssp CSCCCCC------CTTCCEEECCSSC---CSEESCC--CTTCCEEECCSSC-CSEEC----C-------------CCTTC
T ss_pred ccccCcc------cCcCCEEECcCCc---cCcccCc--CCcCCEEECcCCc-CCccc----C-------------CcCcC
Confidence 6554332 2355566555432 1111111 2578888887653 33221 0 12578
Q ss_pred cEEEEecCcCCcccccccccCCccEEEEeecCcchhhcccccCCccccccCCccccccceecccccccccccCCCCCCCC
Q 046742 632 YYVVVSDCNKLRNLSWLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKLKSIYPNALPFL 711 (769)
Q Consensus 632 ~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~ 711 (769)
+.|+++++ .++.++.. +++|++|+++++ .++.++ . .+++|+.|+++++ .+..++.-..
T Consensus 320 ~~L~Ls~N-~l~~lp~~--~~~L~~L~L~~N-~l~~lp--------~------~l~~L~~L~L~~N-~l~~l~~ip~--- 377 (454)
T 1jl5_A 320 EELNVSNN-KLIELPAL--PPRLERLIASFN-HLAEVP--------E------LPQNLKQLHVEYN-PLREFPDIPE--- 377 (454)
T ss_dssp CEEECCSS-CCSCCCCC--CTTCCEEECCSS-CCSCCC--------C------CCTTCCEEECCSS-CCSSCCCCCT---
T ss_pred CEEECCCC-cccccccc--CCcCCEEECCCC-cccccc--------c------hhhhccEEECCCC-CCCcCCCChH---
Confidence 88998886 45555533 688999998875 344331 1 3678899999884 5555432111
Q ss_pred CccEEEec--------CCCCCCCCCCCCCCCCC
Q 046742 712 HLKEIKVS--------NCPELKKLPLDSNSAKG 736 (769)
Q Consensus 712 ~L~~L~i~--------~c~~L~~L~l~~n~~~~ 736 (769)
.+..|... .+++|+.|++++|.+++
T Consensus 378 ~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 378 SVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp TCCEEECCC------------------------
T ss_pred HHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 12222111 13678888888888876
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=4.8e-16 Score=175.79 Aligned_cols=253 Identities=23% Similarity=0.240 Sum_probs=182.8
Q ss_pred eEEEecCCccccCCCCCcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCc
Q 046742 373 SFFVQAGARLTEAPETGKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLK 452 (769)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 452 (769)
..+...+..+..+|.... ++++.|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++| .++
T Consensus 43 ~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~ 114 (622)
T 3g06_A 43 AVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLT 114 (622)
T ss_dssp CEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCC
T ss_pred cEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCC
Confidence 344555566666654322 688999999998888877 67889999999998888876 5788999999998 677
Q ss_pred cccccccCCcCCCEEeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhH
Q 046742 453 QLPSGISRLVSLQHLNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVL 532 (769)
Q Consensus 453 ~lp~~i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 532 (769)
.+|. .+.+|++|++++|+++.+|.. +++|++|++++|. +..+|. .+.+|+.|++++|.+... +
T Consensus 115 ~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~l-~----- 177 (622)
T 3g06_A 115 HLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLTSL-P----- 177 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCC-C-----
T ss_pred CCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCCCC-c-----
Confidence 7776 577889999999998888864 4889999999886 666765 346788888888776542 2
Q ss_pred HHHhhcCcCCcEEEEEeccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccc
Q 046742 533 MEEVLLMENLNVLGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIG 612 (769)
Q Consensus 533 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 612 (769)
..+++|+.|+++.+....++.. ..++..|.+.+..- .. .+ ..+++|++|+++++ .++.++
T Consensus 178 ----~~~~~L~~L~Ls~N~l~~l~~~------~~~L~~L~L~~N~l---~~-l~-~~~~~L~~L~Ls~N-~L~~lp---- 237 (622)
T 3g06_A 178 ----MLPSGLQELSVSDNQLASLPTL------PSELYKLWAYNNRL---TS-LP-ALPSGLKELIVSGN-RLTSLP---- 237 (622)
T ss_dssp ----CCCTTCCEEECCSSCCSCCCCC------CTTCCEEECCSSCC---SS-CC-CCCTTCCEEECCSS-CCSCCC----
T ss_pred ----ccCCCCcEEECCCCCCCCCCCc------cchhhEEECcCCcc---cc-cC-CCCCCCCEEEccCC-ccCcCC----
Confidence 3457888888887766554432 23566665554321 11 11 12478888888875 455433
Q ss_pred cccccccccccCccccccccEEEEecCcCCcccccccccCCccEEEEeecCcchhhcccccCCccccccCCcccccccee
Q 046742 613 NIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLSWLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELL 692 (769)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L 692 (769)
..+++|+.|++++| .++.++. .+++|+.|++++| .++.++. .+..+++|+.|
T Consensus 238 -------------~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N-~L~~lp~-----------~l~~l~~L~~L 289 (622)
T 3g06_A 238 -------------VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRN-QLTRLPE-----------SLIHLSSETTV 289 (622)
T ss_dssp -------------CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCCSCCG-----------GGGGSCTTCEE
T ss_pred -------------CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCC-CCCcCCH-----------HHhhccccCEE
Confidence 23688999999998 6777776 6899999999886 4554433 46678999999
Q ss_pred cccccc
Q 046742 693 ILETLP 698 (769)
Q Consensus 693 ~l~~c~ 698 (769)
+|++++
T Consensus 290 ~L~~N~ 295 (622)
T 3g06_A 290 NLEGNP 295 (622)
T ss_dssp ECCSCC
T ss_pred EecCCC
Confidence 999964
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=2e-16 Score=162.84 Aligned_cols=217 Identities=17% Similarity=0.192 Sum_probs=160.5
Q ss_pred EEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc-cccccCCcCCCEEeccCCC
Q 046742 395 RRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL-PSGISRLVSLQHLNLSLTN 473 (769)
Q Consensus 395 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 473 (769)
+.++..++.++.+|. .-.++|++|++++|.++.+++..|..+++|++|++++| .+..+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCC
Confidence 466777778877765 23579999999999999999888999999999999999 45554 7789999999999999997
Q ss_pred -Cccc-chhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEecc
Q 046742 474 -IKEL-PEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTS 551 (769)
Q Consensus 474 -l~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 551 (769)
+..+ |..+..+++|++|++++|. +..++...+.++++|++|++++|.+....+ ..+..+++|+.|+++.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPD------DTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSC
T ss_pred CccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCH------hHhccCCCccEEECCCCc
Confidence 8887 6679999999999999997 566655558999999999999987754433 235567777777766443
Q ss_pred chhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccCccccccc
Q 046742 552 SHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSL 631 (769)
Q Consensus 552 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L 631 (769)
...++ ...+..+++|++|+++++. +..+..... ..+++|
T Consensus 165 l~~~~---------------------------~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-------------~~l~~L 203 (285)
T 1ozn_A 165 ISSVP---------------------------ERAFRGLHSLDRLLLHQNR-VAHVHPHAF-------------RDLGRL 203 (285)
T ss_dssp CCEEC---------------------------TTTTTTCTTCCEEECCSSC-CCEECTTTT-------------TTCTTC
T ss_pred ccccC---------------------------HHHhcCccccCEEECCCCc-ccccCHhHc-------------cCcccc
Confidence 22111 0124566788888887754 333322111 236788
Q ss_pred cEEEEecCcCCccccc--ccccCCccEEEEeec
Q 046742 632 YYVVVSDCNKLRNLSW--LGLAPNLLTIDILRC 662 (769)
Q Consensus 632 ~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c 662 (769)
+.|+++++ .++.++. +..+++|+.|+++++
T Consensus 204 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 204 MTLYLFAN-NLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CEEECCSS-CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred cEeeCCCC-cCCcCCHHHcccCcccCEEeccCC
Confidence 88888877 4555542 667788888888764
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=9.1e-17 Score=168.01 Aligned_cols=239 Identities=16% Similarity=0.117 Sum_probs=156.3
Q ss_pred CccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc-cccccCCcCCCEEeccCCCCcccchhhhcCCCCcEEecC
Q 046742 415 SLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL-PSGISRLVSLQHLNLSLTNIKELPEELKALVNLKCLNLD 493 (769)
Q Consensus 415 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~ 493 (769)
.+..++++.+.+...+...+..+++|++|++++| .+..+ |..+..+++|++|++++|.+..++. ++.+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 4566677788887777777888899999999999 55554 5789999999999999999997765 9999999999999
Q ss_pred CCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEeccchhhhhhhcccccccccceeee
Q 046742 494 YTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTSSHALSKFLSSHRIQSYILHLRL 573 (769)
Q Consensus 494 ~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l 573 (769)
+|. +..+| .+++|++|++++|.+....+ ..+++|+.|+++.+....+..
T Consensus 89 ~n~-l~~l~-----~~~~L~~L~l~~n~l~~~~~---------~~~~~L~~L~l~~N~l~~~~~---------------- 137 (317)
T 3o53_A 89 NNY-VQELL-----VGPSIETLHAANNNISRVSC---------SRGQGKKNIYLANNKITMLRD---------------- 137 (317)
T ss_dssp SSE-EEEEE-----ECTTCCEEECCSSCCSEEEE---------CCCSSCEEEECCSSCCCSGGG----------------
T ss_pred CCc-ccccc-----CCCCcCEEECCCCccCCcCc---------cccCCCCEEECCCCCCCCccc----------------
Confidence 997 56555 34899999999988765433 235667777766554433221
Q ss_pred cccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccCccccccccEEEEecCcCCcccccccccCC
Q 046742 574 ELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLSWLGLAPN 653 (769)
Q Consensus 574 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~ 653 (769)
..+..+++|++|+++++. +..++..... ..+++|+.|++++| .++.++....+++
T Consensus 138 -----------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~------------~~l~~L~~L~L~~N-~l~~~~~~~~l~~ 192 (317)
T 3o53_A 138 -----------LDEGCRSRVQYLDLKLNE-IDTVNFAELA------------ASSDTLEHLNLQYN-FIYDVKGQVVFAK 192 (317)
T ss_dssp -----------BCTGGGSSEEEEECTTSC-CCEEEGGGGG------------GGTTTCCEEECTTS-CCCEEECCCCCTT
T ss_pred -----------hhhhccCCCCEEECCCCC-CCcccHHHHh------------hccCcCCEEECCCC-cCccccccccccc
Confidence 124455667777776643 3333221110 12566777777666 4555555555677
Q ss_pred ccEEEEeecCcchhhcccccCCccccccCCccccccceecccccccccccCCCCCCCCCccEEEecCCCCCCCCCCCCCC
Q 046742 654 LLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKLKSIYPNALPFLHLKEIKVSNCPELKKLPLDSNS 733 (769)
Q Consensus 654 L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~c~~L~~L~l~~n~ 733 (769)
|++|+++++ .++.++. .+..+++|+.|++++ +.++.+|... ..+++|+.|++++|.
T Consensus 193 L~~L~Ls~N-~l~~l~~-----------~~~~l~~L~~L~L~~-N~l~~l~~~~-----------~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 193 LKTLDLSSN-KLAFMGP-----------EFQSAAGVTWISLRN-NKLVLIEKAL-----------RFSQNLEHFDLRGNG 248 (317)
T ss_dssp CCEEECCSS-CCCEECG-----------GGGGGTTCSEEECTT-SCCCEECTTC-----------CCCTTCCEEECTTCC
T ss_pred CCEEECCCC-cCCcchh-----------hhcccCcccEEECcC-CcccchhhHh-----------hcCCCCCEEEccCCC
Confidence 777777654 2333322 244566777777776 3555655432 334455555555555
Q ss_pred CC
Q 046742 734 AK 735 (769)
Q Consensus 734 ~~ 735 (769)
++
T Consensus 249 ~~ 250 (317)
T 3o53_A 249 FH 250 (317)
T ss_dssp CB
T ss_pred cc
Confidence 43
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=2.1e-16 Score=175.03 Aligned_cols=237 Identities=17% Similarity=0.117 Sum_probs=147.0
Q ss_pred CCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCCCCcccchhhhcCCCCcEE
Q 046742 411 PSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNIKELPEELKALVNLKCL 490 (769)
Q Consensus 411 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 490 (769)
..+++|++|++++|.++.+++..|..+++|++|+|++| .+...+. ++.+++|++|++++|.++.+|. .++|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 34557888888888888777766888888888888888 4544443 7788888888888888777764 3788888
Q ss_pred ecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEeccchhhhhhhcccccccccce
Q 046742 491 NLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTSSHALSKFLSSHRIQSYILH 570 (769)
Q Consensus 491 ~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 570 (769)
++++|. +..++.. .+++|++|++++|.+....+ ..+..+++|+.|+++.+......
T Consensus 105 ~L~~N~-l~~~~~~---~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~-------------- 160 (487)
T 3oja_A 105 HAANNN-ISRVSCS---RGQGKKNIYLANNKITMLRD------LDEGCRSRVQYLDLKLNEIDTVN-------------- 160 (487)
T ss_dssp ECCSSC-CCCEEEC---CCSSCEEEECCSSCCCSGGG------BCGGGGSSEEEEECTTSCCCEEE--------------
T ss_pred ECcCCc-CCCCCcc---ccCCCCEEECCCCCCCCCCc------hhhcCCCCCCEEECCCCCCCCcC--------------
Confidence 888886 4555542 46778888888777654433 12344555555554432221100
Q ss_pred eeecccCCCccccccCc-ccccCCCeEEEeccCCcceEEeccccccccccccccCccccccccEEEEecCcCCccc-ccc
Q 046742 571 LRLELLEDSRSLNVLPL-ANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNL-SWL 648 (769)
Q Consensus 571 L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~l 648 (769)
...+ ..+++|++|+++++. +..++.. ..+++|+.|+++++ .++.+ +.+
T Consensus 161 -------------~~~l~~~l~~L~~L~Ls~N~-l~~~~~~---------------~~l~~L~~L~Ls~N-~l~~~~~~~ 210 (487)
T 3oja_A 161 -------------FAELAASSDTLEHLNLQYNF-IYDVKGQ---------------VVFAKLKTLDLSSN-KLAFMGPEF 210 (487)
T ss_dssp -------------GGGGGGGTTTCCEEECTTSC-CCEEECC---------------CCCTTCCEEECCSS-CCCEECGGG
T ss_pred -------------hHHHhhhCCcccEEecCCCc-ccccccc---------------ccCCCCCEEECCCC-CCCCCCHhH
Confidence 0112 246788888887754 4433211 13678888888877 44444 446
Q ss_pred cccCCccEEEEeecCcchhhcccccCCccccccCCccccccceecccccccc-cccCCCCCCCCCccEEEec
Q 046742 649 GLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKL-KSIYPNALPFLHLKEIKVS 719 (769)
Q Consensus 649 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L-~~~~~~~~~~~~L~~L~i~ 719 (769)
..+++|+.|+++++ .+..++. .+..+++|+.|++++++-. ..++.....++.|+.+.+.
T Consensus 211 ~~l~~L~~L~Ls~N-~l~~lp~-----------~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 211 QSAAGVTWISLRNN-KLVLIEK-----------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GGGTTCSEEECTTS-CCCEECT-----------TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCccEEEecCC-cCcccch-----------hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 77788888888764 3333322 3556678888888875443 1333333344555555554
No 68
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.66 E-value=1.2e-15 Score=162.18 Aligned_cols=287 Identities=15% Similarity=0.095 Sum_probs=174.1
Q ss_pred CCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc------cHHHHHHH
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL------QIDRLQEN 128 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~~~~~ 128 (769)
.+.|+||++++++|.+++..+ +++.|+|++|+|||||+++++++. . .+|+++.... +...+++.
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHH
Confidence 367999999999999998754 799999999999999999999885 1 6788775543 56667777
Q ss_pred HHHHhCCC--------------C--cccccccHHHHHHHHHHHHcc-CCEEEEEecccCccc---------ccccCCCCC
Q 046742 129 IARKIGLY--------------D--QSWKNKRLEIKAADIFKILSR-KKFVLLLDDIWNRVD---------LEKLGIPPM 182 (769)
Q Consensus 129 i~~~l~~~--------------~--~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~---------~~~~~~~~~ 182 (769)
+.+.+... . ......+..+....+.+.... ++++|||||++...+ +..+.. +.
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~-~~ 159 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY-AY 159 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH-HH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH-HH
Confidence 76655320 0 000123455566666665543 499999999976432 111111 11
Q ss_pred CCCCCcEEEEeeccCCccc-----------cc-cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcC
Q 046742 183 NTNGSSKIVFTTRSAGGCG-----------LM-EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECD 250 (769)
Q Consensus 183 ~~~~~~~iivTtR~~~v~~-----------~~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 250 (769)
....+.++|+|++...+.. .. .....+++.+|+.+|+.+++.......... ...+.+..+++.++
T Consensus 160 ~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~---~~~~~~~~i~~~tg 236 (350)
T 2qen_A 160 DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD---VPENEIEEAVELLD 236 (350)
T ss_dssp HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHHT
T ss_pred HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhC
Confidence 1124678999987643211 01 123478999999999999998765332211 12567889999999
Q ss_pred CchhHHHHHHHHhcCCCChhHHH-HHHHH----HHhcccCCC-ChhhhhhHHhhhcCCCCCCccchhHHHHHHhh-cCcc
Q 046742 251 GLPLALITIGRAMAFKKTPQEWK-DAIQV----LRRSASEFP-GMDEIKSCFLYCCLFPEDCDISKIDLIDCWIG-EGFF 323 (769)
Q Consensus 251 g~Plai~~~~~~l~~~~~~~~w~-~~l~~----l~~~~~~~~-~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a-~g~~ 323 (769)
|+|+++..++..+....+...+. ...+. +......+. ..+..+..+..+|. . . .+...+.....+ .|-+
T Consensus 237 G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~-g-~--~~~~~l~~~~~~~~~~~ 312 (350)
T 2qen_A 237 GIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIAL-G-Y--NRWSLIRDYLAVKGTKI 312 (350)
T ss_dssp TCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-T-C--CSHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHh-C-C--CCHHHHHHHHHHHhCCC
Confidence 99999999987643212222221 11111 111100000 01235666667776 2 1 344455443322 1101
Q ss_pred ccchhHhHHHHHHHHhhcccccCCCceEEhHHHHHHH
Q 046742 324 DEYDRGYTIIGDLLRACLLEEVNDNNVKLHDVIRDMG 360 (769)
Q Consensus 324 ~~~~~~~~~~~~L~~~sll~~~~~~~~~mhdl~~~~~ 360 (769)
.......+++.|.+.+++...+..+...|.+++++.
T Consensus 313 -~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 313 -PEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVL 348 (350)
T ss_dssp -CHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHH
T ss_pred -CHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHH
Confidence 223567789999999999875433334577777654
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=8.4e-17 Score=178.29 Aligned_cols=241 Identities=17% Similarity=0.128 Sum_probs=179.5
Q ss_pred cceeEEEEeeccccccccc--CCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEE
Q 046742 390 KWQVIRRMSLMENQVQSLS--KIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHL 467 (769)
Q Consensus 390 ~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 467 (769)
.+++++.|++++|.+..++ .+..+++|++|++++|.++..++ +..+++|++|+|++| .++.+|. .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEE
Confidence 4458999999999998876 37899999999999999988776 899999999999999 6666663 3899999
Q ss_pred eccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhh-cCcCCcEEE
Q 046742 468 NLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVL-LMENLNVLG 546 (769)
Q Consensus 468 ~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~ 546 (769)
++++|.+..+|. ..+++|+.|++++|. +..+++..++++++|++|++++|.+....+ ..+. .+++|+.|+
T Consensus 105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 105 HAANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNF------AELAASSDTLEHLN 175 (487)
T ss_dssp ECCSSCCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEG------GGGGGGTTTCCEEE
T ss_pred ECcCCcCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcCh------HHHhhhCCcccEEe
Confidence 999999998875 357899999999997 555554448999999999999998876544 2233 578888887
Q ss_pred EEeccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccCcc
Q 046742 547 INLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGF 626 (769)
Q Consensus 547 l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 626 (769)
++.+..... .+...+++|++|+++++ .+..++.++.
T Consensus 176 Ls~N~l~~~-----------------------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-------------- 211 (487)
T 3oja_A 176 LQYNFIYDV-----------------------------KGQVVFAKLKTLDLSSN-KLAFMGPEFQ-------------- 211 (487)
T ss_dssp CTTSCCCEE-----------------------------ECCCCCTTCCEEECCSS-CCCEECGGGG--------------
T ss_pred cCCCccccc-----------------------------cccccCCCCCEEECCCC-CCCCCCHhHc--------------
Confidence 774443221 12334788999999885 4555554432
Q ss_pred ccccccEEEEecCcCCcccc-cccccCCccEEEEeecCcchhhcccccCCccccccCCccccccceeccccccccc
Q 046742 627 QFHSLYYVVVSDCNKLRNLS-WLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKLK 701 (769)
Q Consensus 627 ~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~ 701 (769)
.+++|+.|+++++ .++.+| .+..+++|+.|++++++-..... | ..+..++.|+.+.+..+..+.
T Consensus 212 ~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~-------~---~~~~~l~~L~~l~~~~~~~~~ 276 (487)
T 3oja_A 212 SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTL-------R---DFFSKNQRVQTVAKQTVKKLT 276 (487)
T ss_dssp GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHH-------H---HHHTTCHHHHHHHHHHHHHHT
T ss_pred CCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcch-------H---HHHHhCCCCcEEecccccccc
Confidence 3788999999987 455554 46778999999998765431111 1 134456778777776554443
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=4.8e-16 Score=155.43 Aligned_cols=103 Identities=28% Similarity=0.339 Sum_probs=54.0
Q ss_pred CccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccc-cccCCcCCCEEeccC-CCCcccch-hhhcCCCCcEEe
Q 046742 415 SLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPS-GISRLVSLQHLNLSL-TNIKELPE-ELKALVNLKCLN 491 (769)
Q Consensus 415 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~-~~l~~lp~-~~~~l~~L~~L~ 491 (769)
+|++|++++|.++.+++..|..+++|++|++++|..++.+|. .+.++++|++|++++ |+++.+|. .+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 555555555555555554455555555555555532444443 455555555555555 55555543 245555555555
Q ss_pred cCCCcCcCccCcccccCCcccc---eeeeecc
Q 046742 492 LDYTKSLCRIPRHLISNFSMLY---ILRIVDC 520 (769)
Q Consensus 492 l~~~~~l~~~p~~~i~~L~~L~---~L~l~~~ 520 (769)
+++|. +..+|. +..+++|+ +|++++|
T Consensus 112 l~~n~-l~~lp~--~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 112 IFNTG-LKMFPD--LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EEEEC-CCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred CCCCC-Cccccc--cccccccccccEEECCCC
Confidence 55554 344554 44555554 5555554
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=5.6e-16 Score=161.08 Aligned_cols=149 Identities=23% Similarity=0.336 Sum_probs=125.2
Q ss_pred CCcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEE
Q 046742 388 TGKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHL 467 (769)
Q Consensus 388 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 467 (769)
...++++++|++.++.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++| .++.+| .+..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEE
Confidence 34567899999999999988888899999999999999988877 888999999999999 577776 68899999999
Q ss_pred eccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEE
Q 046742 468 NLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGI 547 (769)
Q Consensus 468 ~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 547 (769)
++++|.++.+|. +..+++|++|++++|. +..++. +..+++|++|++++|.+....+ +..+++|+.|++
T Consensus 113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--------l~~l~~L~~L~l 180 (308)
T 1h6u_A 113 DLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVSDLTP--------LANLSKLTTLKA 180 (308)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCCCGG--------GTTCTTCCEEEC
T ss_pred ECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcCCCChh--------hcCCCCCCEEEC
Confidence 999999998875 8999999999999996 677776 7899999999999887654321 667788888887
Q ss_pred Eeccc
Q 046742 548 NLTSS 552 (769)
Q Consensus 548 ~~~~~ 552 (769)
+.+..
T Consensus 181 ~~n~l 185 (308)
T 1h6u_A 181 DDNKI 185 (308)
T ss_dssp CSSCC
T ss_pred CCCcc
Confidence 75443
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=4.6e-16 Score=160.04 Aligned_cols=150 Identities=19% Similarity=0.173 Sum_probs=121.8
Q ss_pred CcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEe
Q 046742 389 GKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLN 468 (769)
Q Consensus 389 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 468 (769)
..+++++.+++.++.++.+|... .+.+++|++++|.++.+++..|..+++|++|+|++| .++.+|.. +.+++|++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEE
T ss_pred cccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEE
Confidence 34557888999999998887532 378999999999999888878999999999999999 67777754 7899999999
Q ss_pred ccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEE
Q 046742 469 LSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGIN 548 (769)
Q Consensus 469 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 548 (769)
+++|.++.+|..+..+++|++|++++|. +..+|...+.++++|++|++++|.+....+ ..+..+++|+.|+++
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPP------GLLTPTPKLEKLSLA 156 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCT------TTTTTCTTCCEEECT
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccCh------hhcccccCCCEEECC
Confidence 9999999999989999999999999996 678887668999999999999887654433 223455666666655
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=1.4e-15 Score=158.15 Aligned_cols=201 Identities=20% Similarity=0.276 Sum_probs=146.4
Q ss_pred cccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCCCCcccch
Q 046742 400 MENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNIKELPE 479 (769)
Q Consensus 400 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~ 479 (769)
..+.+..+....++++|++|++++|.++.++. +..+++|++|++++| .+..+|. +..+++|++|++++|.++.+|
T Consensus 27 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~- 101 (308)
T 1h6u_A 27 GKSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS- 101 (308)
T ss_dssp TCSSTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-
T ss_pred CCCCcCceecHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-
Confidence 33444444445668899999999999988864 888999999999999 7777876 999999999999999999886
Q ss_pred hhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEeccchhhhhhh
Q 046742 480 ELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTSSHALSKFL 559 (769)
Q Consensus 480 ~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 559 (769)
.++.+++|++|++++|. +..+|. +..+++|++|++++|.+....+ +..+++|+.|+++.+....+
T Consensus 102 ~~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--------l~~l~~L~~L~l~~n~l~~~---- 166 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQ-ITDVTP--LAGLSNLQVLYLDLNQITNISP--------LAGLTNLQYLSIGNAQVSDL---- 166 (308)
T ss_dssp GGTTCTTCCEEECTTSC-CCCCGG--GTTCTTCCEEECCSSCCCCCGG--------GGGCTTCCEEECCSSCCCCC----
T ss_pred hhcCCCCCCEEECCCCC-CCCchh--hcCCCCCCEEECCCCccCcCcc--------ccCCCCccEEEccCCcCCCC----
Confidence 69999999999999997 677775 8999999999999887644321 55667777776653322211
Q ss_pred cccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccCccccccccEEEEecC
Q 046742 560 SSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSLYYVVVSDC 639 (769)
Q Consensus 560 ~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 639 (769)
.++..+++|+.|+++++. ++.++. ...+++|+.|++++|
T Consensus 167 -------------------------~~l~~l~~L~~L~l~~n~-l~~~~~---------------l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 167 -------------------------TPLANLSKLTTLKADDNK-ISDISP---------------LASLPNLIEVHLKNN 205 (308)
T ss_dssp -------------------------GGGTTCTTCCEEECCSSC-CCCCGG---------------GGGCTTCCEEECTTS
T ss_pred -------------------------hhhcCCCCCCEEECCCCc-cCcChh---------------hcCCCCCCEEEccCC
Confidence 114456677777776653 332211 123667777777776
Q ss_pred cCCcccccccccCCccEEEEeec
Q 046742 640 NKLRNLSWLGLAPNLLTIDILRC 662 (769)
Q Consensus 640 ~~l~~l~~l~~l~~L~~L~l~~c 662 (769)
.++.++.+..+++|+.|+++++
T Consensus 206 -~l~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 206 -QISDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp -CCCBCGGGTTCTTCCEEEEEEE
T ss_pred -ccCccccccCCCCCCEEEccCC
Confidence 4555555667777777777664
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=1.9e-15 Score=154.08 Aligned_cols=166 Identities=25% Similarity=0.414 Sum_probs=106.9
Q ss_pred EEecCCccccCCCCCcceeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCc
Q 046742 375 FVQAGARLTEAPETGKWQVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLK 452 (769)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 452 (769)
+...+..+..+|.. -.+++++|++++|.++.++. +.++++|++|++++|.++.+++..|..+++|++|++++| .+.
T Consensus 21 l~~~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~ 98 (270)
T 2o6q_A 21 VDCSSKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQ 98 (270)
T ss_dssp EECTTSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCC
T ss_pred EEccCCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCC
Confidence 33444445544431 12457777777777766653 667777777777777777777766677777777777777 454
Q ss_pred cccc-cccCCcCCCEEeccCCCCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhh
Q 046742 453 QLPS-GISRLVSLQHLNLSLTNIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCE 530 (769)
Q Consensus 453 ~lp~-~i~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 530 (769)
.+|. .+..+.+|++|++++|.++.+|.. ++.+++|++|++++|. +..+|...+..+++|++|++++|.+....+
T Consensus 99 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--- 174 (270)
T 2o6q_A 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPE--- 174 (270)
T ss_dssp CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT---
T ss_pred cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeCh---
Confidence 5543 456777777777777777766544 5677777777777775 566666656777777777777766544322
Q ss_pred hHHHHhhcCcCCcEEEEEe
Q 046742 531 VLMEEVLLMENLNVLGINL 549 (769)
Q Consensus 531 ~~~~~l~~l~~L~~L~l~~ 549 (769)
..+..+++|+.|+++.
T Consensus 175 ---~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 175 ---GAFDKLTELKTLKLDN 190 (270)
T ss_dssp ---TTTTTCTTCCEEECCS
T ss_pred ---hHhccCCCcCEEECCC
Confidence 2244556666666553
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.62 E-value=2.2e-15 Score=153.62 Aligned_cols=146 Identities=21% Similarity=0.293 Sum_probs=116.3
Q ss_pred EEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcccccc-ccCCcCCCEEeccCC
Q 046742 394 IRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSG-ISRLVSLQHLNLSLT 472 (769)
Q Consensus 394 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~l~~~ 472 (769)
.+.++++++.++.+|... .++|+.|++++|.++.+++..|..+++|++|++++| .++.+|.. +..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCC
Confidence 567888899988887622 268999999999999998877999999999999999 66677765 588999999999999
Q ss_pred CCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEE
Q 046742 473 NIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGIN 548 (769)
Q Consensus 473 ~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 548 (769)
.+..+|.. +..+++|++|++++|. +..+|...+..+++|++|++++|.+....+ ..+..+++|+.|+++
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPK------GVFDKLTSLKELRLY 165 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECC
T ss_pred cCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCH------hHccCCcccceeEec
Confidence 99988865 6889999999999997 677777668899999999999887644322 123445555555554
No 76
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.62 E-value=1.1e-14 Score=154.97 Aligned_cols=283 Identities=12% Similarity=0.083 Sum_probs=164.9
Q ss_pred CCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-----ccHHHHHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-----LQIDRLQENIA 130 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~ 130 (769)
+.|+||++++++|.+ +.. +++.|+|++|+|||+|+++++++. .. ..+|+++... .+...++..+.
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHHHHHH
Confidence 678999999999999 765 699999999999999999999987 22 2578887643 24445555554
Q ss_pred HHhC------------------CCCcc----c-----ccccHHHHHHHHHHHHccCCEEEEEecccCcc-----cccccC
Q 046742 131 RKIG------------------LYDQS----W-----KNKRLEIKAADIFKILSRKKFVLLLDDIWNRV-----DLEKLG 178 (769)
Q Consensus 131 ~~l~------------------~~~~~----~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~~~ 178 (769)
+.+. ...+. . ...........+.+... ++++|||||++... ++..+.
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHH
Confidence 4331 00000 0 01233444444433222 48999999997632 221111
Q ss_pred CCCCCCCCCcEEEEeeccCCccc----------cc--cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHH
Q 046742 179 IPPMNTNGSSKIVFTTRSAGGCG----------LM--EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVA 246 (769)
Q Consensus 179 ~~~~~~~~~~~iivTtR~~~v~~----------~~--~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~ 246 (769)
..+.....+..+|+|+|...... .. .....+++.+|+.+|+.+++...+...... ... ...|+
T Consensus 162 ~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~~----~~~i~ 236 (357)
T 2fna_A 162 AYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADID-FKD----YEVVY 236 (357)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCC-CCC----HHHHH
T ss_pred HHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCC-CCc----HHHHH
Confidence 11111124678999998653211 01 113578999999999999998765321111 111 28899
Q ss_pred HHcCCchhHHHHHHHHhcCCCChhHHHH-HHH--------HHHhcccCCCCh-hhhhhHHhhhcCCCCCCccchhHHHHH
Q 046742 247 KECDGLPLALITIGRAMAFKKTPQEWKD-AIQ--------VLRRSASEFPGM-DEIKSCFLYCCLFPEDCDISKIDLIDC 316 (769)
Q Consensus 247 ~~~~g~Plai~~~~~~l~~~~~~~~w~~-~l~--------~l~~~~~~~~~~-~~~k~cfl~~s~fp~~~~i~~~~li~~ 316 (769)
+.++|+|+++..++..+....+...|.. +.+ .+.........+ +..+..+..+|+ . . +...+...
T Consensus 237 ~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g--~--~~~~l~~~ 311 (357)
T 2fna_A 237 EKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK-C--G--KWSDVKRA 311 (357)
T ss_dssp HHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C--B--CHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-C--C--CHHHHHHH
Confidence 9999999999999877643233333321 111 111111000012 226677777776 2 1 34444332
Q ss_pred Hh-hcCccccchhHhHHHHHHHHhhcccccCCCceEEhHHHHHH
Q 046742 317 WI-GEGFFDEYDRGYTIIGDLLRACLLEEVNDNNVKLHDVIRDM 359 (769)
Q Consensus 317 w~-a~g~~~~~~~~~~~~~~L~~~sll~~~~~~~~~mhdl~~~~ 359 (769)
.- ..|.--.......+++.|.+.+++...+..+...|.++++.
T Consensus 312 ~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 312 LELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA 355 (357)
T ss_dssp HHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHh
Confidence 10 11310122256678999999999987643333467788765
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=1.5e-15 Score=151.72 Aligned_cols=211 Identities=14% Similarity=0.179 Sum_probs=134.6
Q ss_pred CcccchhhhcCCCcceEEEecCCCCCccccc-cccCCcCCCEEeccCCC-Ccccch-hhhcCCCCcEEecCCCcCcCccC
Q 046742 426 LKVITDGFFQFMPSLKVLNLSNNQSLKQLPS-GISRLVSLQHLNLSLTN-IKELPE-ELKALVNLKCLNLDYTKSLCRIP 502 (769)
Q Consensus 426 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~-l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p 502 (769)
++.+|. + .++|++|++++| .++.+|. .+..+++|++|++++|. ++.+|. .+..+++|++|++++|+.+..+|
T Consensus 23 l~~ip~--~--~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS--L--PPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC--C--CTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccccCC--C--CCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 556665 2 247889999998 5666665 68889999999999986 888876 57888999999998833477888
Q ss_pred cccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEeccchhhhhhhcccccccccceeeecccCCCccc
Q 046742 503 RHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSL 582 (769)
Q Consensus 503 ~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~ 582 (769)
...+.++++|++|++++|.+.. ++. +..+++|
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-------~~~l~~L---------------------------------------- 129 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-FPD-------LTKVYST---------------------------------------- 129 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-CCC-------CTTCCBC----------------------------------------
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-ccc-------ccccccc----------------------------------------
Confidence 7668888888888888765432 210 1112111
Q ss_pred cccCcccccCCCeEEEeccCCcceEEeccccccccccccccCcccccccc-EEEEecCcCCccccc-ccccCCccEEEEe
Q 046742 583 NVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSLY-YVVVSDCNKLRNLSW-LGLAPNLLTIDIL 660 (769)
Q Consensus 583 ~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~l~~-l~~l~~L~~L~l~ 660 (769)
+.|++|++++++.++.++.+.. ..+++|+ .|+++++ .++.++. ....++|+.|+++
T Consensus 130 --------~~L~~L~l~~N~~l~~i~~~~~-------------~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 130 --------DIFFILEITDNPYMTSIPVNAF-------------QGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp --------CSEEEEEEESCTTCCEECTTTT-------------TTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECT
T ss_pred --------ccccEEECCCCcchhhcCcccc-------------cchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcC
Confidence 1223666666545554433221 1255666 6666655 3344432 1222567777777
Q ss_pred ecCcchhhcccccCCccccccCCccc-cccceecccccccccccCCCCCCCCCccEEEecCCCCC
Q 046742 661 RCPEIEEISGQYSGEVPEMMRNLNPF-ARLELLILETLPKLKSIYPNALPFLHLKEIKVSNCPEL 724 (769)
Q Consensus 661 ~c~~l~~l~~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~c~~L 724 (769)
++..++.++. ..+..+ ++|+.|++++ +.++.+|.. .+++|+.|.+.++.+|
T Consensus 188 ~n~~l~~i~~----------~~~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 188 KNKYLTVIDK----------DAFGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp TCTTCCEECT----------TTTTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC---
T ss_pred CCCCcccCCH----------HHhhccccCCcEEECCC-CccccCChh--HhccCceeeccCccCC
Confidence 6654555433 234556 7888888888 677777764 6778888888877654
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=3.9e-15 Score=152.37 Aligned_cols=218 Identities=22% Similarity=0.183 Sum_probs=153.5
Q ss_pred EecCCccccCCCCCcceeEEEEeeccccccccc--CCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcc
Q 046742 376 VQAGARLTEAPETGKWQVIRRMSLMENQVQSLS--KIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQ 453 (769)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 453 (769)
...+..+..+|..- .+++++|++++|.++.++ .+.++++|++|++++|.++.+++..|..+++|++|++++|.....
T Consensus 13 ~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 13 QCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp ECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred EecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 34444555555421 247999999999998876 478899999999999999999887799999999999999943333
Q ss_pred ccccccCCcCCCEEeccCCCCcccch-hhhcCCCCcEEecCCCcCcCc--cCcccccCCcccceeeeeccccccccchhh
Q 046742 454 LPSGISRLVSLQHLNLSLTNIKELPE-ELKALVNLKCLNLDYTKSLCR--IPRHLISNFSMLYILRIVDCHYFEEVENCE 530 (769)
Q Consensus 454 lp~~i~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 530 (769)
.|..+.++.+|++|++++|.+..++. .++.+++|++|++++|. +.. +|.. +.++++|++|++++|.+....+.
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~-- 167 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCT-- 167 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEECGG--
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCcCCHH--
Confidence 44678999999999999999998776 58999999999999997 454 5665 88999999999999887654331
Q ss_pred hHHHHhhcCcCCc-EEEEEeccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEe
Q 046742 531 VLMEEVLLMENLN-VLGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKI 609 (769)
Q Consensus 531 ~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~ 609 (769)
....+..++.+. .++++.+....++. ......+|++|+++++. ++.++.
T Consensus 168 -~~~~l~~L~~l~l~L~ls~n~l~~~~~----------------------------~~~~~~~L~~L~L~~n~-l~~~~~ 217 (276)
T 2z62_A 168 -DLRVLHQMPLLNLSLDLSLNPMNFIQP----------------------------GAFKEIRLKELALDTNQ-LKSVPD 217 (276)
T ss_dssp -GGHHHHTCTTCCEEEECCSSCCCEECT----------------------------TSSCSCCEEEEECCSSC-CSCCCT
T ss_pred -HhhhhhhccccceeeecCCCcccccCc----------------------------cccCCCcccEEECCCCc-eeecCH
Confidence 123344444443 44444322211110 01122378888888754 554443
Q ss_pred ccccccccccccccCccccccccEEEEecCcC
Q 046742 610 EIGNIQQNVCVSQVHGFQFHSLYYVVVSDCNK 641 (769)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 641 (769)
... ..+++|+.|++++++-
T Consensus 218 ~~~-------------~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 218 GIF-------------DRLTSLQKIWLHTNPW 236 (276)
T ss_dssp TTT-------------TTCCSCCEEECCSSCB
T ss_pred hHh-------------cccccccEEEccCCcc
Confidence 322 2478889999887653
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.61 E-value=1.1e-16 Score=176.96 Aligned_cols=207 Identities=16% Similarity=0.140 Sum_probs=120.6
Q ss_pred eeEEEEeeccccccccc--C-CCCCCCccEEEccCCCCcccc----hhhhcCCCcceEEEecCCCCCcc-ccccc-cCCc
Q 046742 392 QVIRRMSLMENQVQSLS--K-IPSCPSLITLFLNNNNLKVIT----DGFFQFMPSLKVLNLSNNQSLKQ-LPSGI-SRLV 462 (769)
Q Consensus 392 ~~l~~L~l~~~~~~~~~--~-~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~~~~~~~-lp~~i-~~l~ 462 (769)
+++++|+++++.+...+ . +..+++|++|++++|.++... +..+..+++|++|++++|. ++. .+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHh
Confidence 46788888887765432 2 456778888888888776321 2336677888888888883 433 23232 2344
Q ss_pred ----CCCEEeccCCCCc-----ccchhhhcCCCCcEEecCCCcCcCccCc----ccccCCcccceeeeeccccccccchh
Q 046742 463 ----SLQHLNLSLTNIK-----ELPEELKALVNLKCLNLDYTKSLCRIPR----HLISNFSMLYILRIVDCHYFEEVENC 529 (769)
Q Consensus 463 ----~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~l~~~p~----~~i~~L~~L~~L~l~~~~~~~~~~~~ 529 (769)
+|++|++++|.++ .+|..+..+++|++|++++|......+. ......++|++|++++|.+.....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-- 159 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC-- 159 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH--
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH--
Confidence 6888888888777 4577778888888888888863222121 212235678888888876544321
Q ss_pred hhHHHHhhcCcCCcEEEEEeccchhhh--hhhccc-ccccccceeeecccCCCccc--c-ccCcccccCCCeEEEecc
Q 046742 530 EVLMEEVLLMENLNVLGINLTSSHALS--KFLSSH-RIQSYILHLRLELLEDSRSL--N-VLPLANIKNLESLGFRNC 601 (769)
Q Consensus 530 ~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~-~~~~~l~~L~l~~~~~~~~~--~-~~~l~~l~~L~~L~l~~~ 601 (769)
......+..+++|+.|+++.+...... .+.... .....++.|.+.++.-.... . ...+..+++|++|+++++
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 122345666778888888766543321 111100 01125556665554221110 0 011445677888877765
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.61 E-value=1.9e-15 Score=154.21 Aligned_cols=154 Identities=23% Similarity=0.317 Sum_probs=117.1
Q ss_pred CCCcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccc-cccCCcCCC
Q 046742 387 ETGKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPS-GISRLVSLQ 465 (769)
Q Consensus 387 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~ 465 (769)
....+++++.|++.++.+..++.+..+++|++|++++|.++.++ .+..+++|++|++++| .++.+|. .+..+++|+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCC
T ss_pred ccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCC
Confidence 34455678888888888888888888888888888888887764 3788888888888888 5555544 468888888
Q ss_pred EEeccCCCCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcE
Q 046742 466 HLNLSLTNIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNV 544 (769)
Q Consensus 466 ~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~ 544 (769)
+|++++|+++.+|.. ++.+++|++|++++|. +..+|...++.+++|++|++++|.+....+ ..+..+++|+.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~ 185 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPE------GVFDKLTQLKD 185 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCE
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCH------HHhcCCccCCE
Confidence 888888888877765 6888888888888886 667777667888888888888887654333 22456677777
Q ss_pred EEEEec
Q 046742 545 LGINLT 550 (769)
Q Consensus 545 L~l~~~ 550 (769)
|+++.+
T Consensus 186 L~L~~N 191 (272)
T 3rfs_A 186 LRLYQN 191 (272)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 776643
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=1.5e-16 Score=165.91 Aligned_cols=248 Identities=17% Similarity=0.121 Sum_probs=159.6
Q ss_pred ceeEEEEeecccccccccC-CCCCCCccEEEccCCCCcc--cchhhhc-------CCCcceEEEecCCCCCccccccc--
Q 046742 391 WQVIRRMSLMENQVQSLSK-IPSCPSLITLFLNNNNLKV--ITDGFFQ-------FMPSLKVLNLSNNQSLKQLPSGI-- 458 (769)
Q Consensus 391 ~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~--~~~~~~~-------~l~~L~~L~L~~~~~~~~lp~~i-- 458 (769)
..+++.+++.+|.+ .+|. +... |++|++++|.++. ++.. +. .+++|++|++++|...+.+|..+
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34566777777777 5444 3322 8888888887753 3332 22 58889999999985555778776
Q ss_pred cCCcCCCEEeccCCCCcccchhhhcC-----CCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHH
Q 046742 459 SRLVSLQHLNLSLTNIKELPEELKAL-----VNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLM 533 (769)
Q Consensus 459 ~~l~~L~~L~l~~~~l~~lp~~~~~l-----~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 533 (769)
..+++|++|++++|+++.+|..++.+ ++|++|++++|. +..++...++++++|++|++++|.+.+..+ ..
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~ 192 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERG----LI 192 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHH----HH
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchH----HH
Confidence 88899999999999888888777777 889999999887 566665558889999999999887544321 12
Q ss_pred HHh--hcCcCCcEEEEEeccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEE-ec
Q 046742 534 EEV--LLMENLNVLGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELK-IE 610 (769)
Q Consensus 534 ~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~-~~ 610 (769)
..+ ..+++|+.|+++.+....++.... ..+..+++|++|+++++. ++..+ ..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------------------------~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 247 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCS------------------------ALAAARVQLQGLDLSHNS-LRDAAGAP 247 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHH------------------------HHHHTTCCCSEEECTTSC-CCSSCCCS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHH------------------------HHHhcCCCCCEEECCCCc-CCcccchh
Confidence 333 667788888777555442221110 002345678888887754 33211 11
Q ss_pred cccccccccccccCccccccccEEEEecCcCCcccccccccCCccEEEEeecCcchhhcccccCCccccccCCccccccc
Q 046742 611 IGNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLSWLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLE 690 (769)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~ 690 (769)
.. ..+++|+.|+++++ .++.++.-- .++|++|+++++ .++.+ | .+..+++|+
T Consensus 248 ~~-------------~~l~~L~~L~Ls~N-~l~~ip~~~-~~~L~~L~Ls~N-~l~~~--------p----~~~~l~~L~ 299 (312)
T 1wwl_A 248 SC-------------DWPSQLNSLNLSFT-GLKQVPKGL-PAKLSVLDLSYN-RLDRN--------P----SPDELPQVG 299 (312)
T ss_dssp CC-------------CCCTTCCEEECTTS-CCSSCCSSC-CSEEEEEECCSS-CCCSC--------C----CTTTSCEEE
T ss_pred hh-------------hhcCCCCEEECCCC-ccChhhhhc-cCCceEEECCCC-CCCCC--------h----hHhhCCCCC
Confidence 10 12577888888877 455554311 177888888764 34333 1 245678888
Q ss_pred eeccccccccc
Q 046742 691 LLILETLPKLK 701 (769)
Q Consensus 691 ~L~l~~c~~L~ 701 (769)
.|++++ +.++
T Consensus 300 ~L~L~~-N~l~ 309 (312)
T 1wwl_A 300 NLSLKG-NPFL 309 (312)
T ss_dssp EEECTT-CTTT
T ss_pred EEeccC-CCCC
Confidence 888887 3443
No 82
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=4.4e-16 Score=178.14 Aligned_cols=199 Identities=15% Similarity=0.071 Sum_probs=106.1
Q ss_pred cceeEEEEeeccccccccc-----C-CCCCCCccEEEccCCCCcccc----hhhhcCCCcceEEEecCCCCCcccccccc
Q 046742 390 KWQVIRRMSLMENQVQSLS-----K-IPSCPSLITLFLNNNNLKVIT----DGFFQFMPSLKVLNLSNNQSLKQLPSGIS 459 (769)
Q Consensus 390 ~~~~l~~L~l~~~~~~~~~-----~-~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~~~~~~~lp~~i~ 459 (769)
.+++|++|++.+|.+.... . ...+++|++|++++|.++.+. ...+..+++|++|++++| .+..+|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHh
Confidence 3456666666666543221 1 234566666666666554222 222455666667776666 4555666666
Q ss_pred CCcCCCEEeccCCCC----cccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHH
Q 046742 460 RLVSLQHLNLSLTNI----KELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEE 535 (769)
Q Consensus 460 ~l~~L~~L~l~~~~l----~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 535 (769)
++++|++|+++.... ...+..+..+++|+.|+++++. ...+|.. +..+++|++|++++|.+... .....
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~-~~~~~~L~~L~Ls~~~l~~~-----~~~~~ 313 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPIL-FPFAAQIRKLDLLYALLETE-----DHCTL 313 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGG-GGGGGGCCEEEETTCCCCHH-----HHHHH
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHH-HhhcCCCcEEecCCCcCCHH-----HHHHH
Confidence 666666666654211 1233345555666666665542 3445554 66788888888888763221 11133
Q ss_pred hhcCcCCcEEEEEeccchhhhhhhcccccccccceeeecc----------cCCCccccccC-cccccCCCeEEE
Q 046742 536 VLLMENLNVLGINLTSSHALSKFLSSHRIQSYILHLRLEL----------LEDSRSLNVLP-LANIKNLESLGF 598 (769)
Q Consensus 536 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~----------~~~~~~~~~~~-l~~l~~L~~L~l 598 (769)
+..+++|+.|++. +.... ..+........+|+.|.+.+ +.......... ...+++|++|++
T Consensus 314 ~~~~~~L~~L~L~-~~~~~-~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l 385 (592)
T 3ogk_B 314 IQKCPNLEVLETR-NVIGD-RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385 (592)
T ss_dssp HTTCTTCCEEEEE-GGGHH-HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred HHhCcCCCEEecc-CccCH-HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe
Confidence 5677888888887 22211 11111112234567777663 33332222112 234677777777
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=8.5e-15 Score=149.81 Aligned_cols=212 Identities=18% Similarity=0.141 Sum_probs=155.2
Q ss_pred eecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcccc-ccccCCcCCCEEeccCCCCcc
Q 046742 398 SLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLP-SGISRLVSLQHLNLSLTNIKE 476 (769)
Q Consensus 398 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~ 476 (769)
+..+..+..+|... .++|++|++++|.++.+++..|..+++|++|++++| .+..++ ..+.++++|++|++++|.++.
T Consensus 13 ~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 13 QCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp ECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCc
Confidence 34455555666521 257999999999999999877999999999999999 555655 478999999999999999998
Q ss_pred cc-hhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccc-cchhhhHHHHhhcCcCCcEEEEEeccchh
Q 046742 477 LP-EELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEE-VENCEVLMEEVLLMENLNVLGINLTSSHA 554 (769)
Q Consensus 477 lp-~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 554 (769)
++ ..+.++++|++|++++|. +..++...++.+++|++|++++|.+... ++ ..+..+++|+.|+++.+....
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~------~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLP------EYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCC------GGGGGCTTCCEEECCSSCCCE
T ss_pred cChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCc------hhhccCCCCCEEECCCCCCCc
Confidence 76 568999999999999997 6667665589999999999999887542 23 346778888888877554332
Q ss_pred hhhhhcccccccccceeeecccCCCccccccCcccccCCC----eEEEeccCCcceEEeccccccccccccccCcccccc
Q 046742 555 LSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLE----SLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHS 630 (769)
Q Consensus 555 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 630 (769)
... ..+..+++|+ +|+++++. ++.++.... ...+
T Consensus 164 ~~~---------------------------~~~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~--------------~~~~ 201 (276)
T 2z62_A 164 IYC---------------------------TDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAF--------------KEIR 201 (276)
T ss_dssp ECG---------------------------GGGHHHHTCTTCCEEEECCSSC-CCEECTTSS--------------CSCC
T ss_pred CCH---------------------------HHhhhhhhccccceeeecCCCc-ccccCcccc--------------CCCc
Confidence 110 1123334444 67777643 444433222 2347
Q ss_pred ccEEEEecCcCCccccc--ccccCCccEEEEee
Q 046742 631 LYYVVVSDCNKLRNLSW--LGLAPNLLTIDILR 661 (769)
Q Consensus 631 L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~ 661 (769)
|+.|+++++ .++.++. +..+++|+.|++++
T Consensus 202 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 202 LKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp EEEEECCSS-CCSCCCTTTTTTCCSCCEEECCS
T ss_pred ccEEECCCC-ceeecCHhHhcccccccEEEccC
Confidence 999999988 4666653 56789999999985
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=4.6e-15 Score=151.32 Aligned_cols=169 Identities=22% Similarity=0.369 Sum_probs=144.0
Q ss_pred EEecCCccccCCCCCcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc
Q 046742 375 FVQAGARLTEAPETGKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL 454 (769)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l 454 (769)
+...+..+..++.+..+++|++|++.+|.+..++.+..+++|++|++++|.++.+++..|..+++|++|++++| .+..+
T Consensus 46 L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~ 124 (272)
T 3rfs_A 46 IIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSL 124 (272)
T ss_dssp EECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCC
T ss_pred eeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCcc
Confidence 44455566677778888999999999999999888999999999999999999999988899999999999999 55565
Q ss_pred cc-cccCCcCCCEEeccCCCCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhH
Q 046742 455 PS-GISRLVSLQHLNLSLTNIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVL 532 (769)
Q Consensus 455 p~-~i~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 532 (769)
|. .++.+++|++|++++|.++.+|.. ++.+++|+.|++++|. +..+|...++.+++|++|++++|.+....+
T Consensus 125 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----- 198 (272)
T 3rfs_A 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPD----- 198 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----
T ss_pred CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCH-----
Confidence 54 579999999999999999988876 6899999999999997 677887768999999999999998765543
Q ss_pred HHHhhcCcCCcEEEEEecc
Q 046742 533 MEEVLLMENLNVLGINLTS 551 (769)
Q Consensus 533 ~~~l~~l~~L~~L~l~~~~ 551 (769)
..+..+++|+.|+++.+.
T Consensus 199 -~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 199 -GVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp -TTTTTCTTCCEEECCSSC
T ss_pred -HHHhCCcCCCEEEccCCC
Confidence 335678888888877543
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.58 E-value=1e-14 Score=158.65 Aligned_cols=288 Identities=12% Similarity=0.053 Sum_probs=172.5
Q ss_pred CCCCCchHHHHHHHHHh-cc------CCccEEEE--EcCCCCcHHHHHHHHHhhccCC--CCCC-cEEEEEEeCccccHH
Q 046742 56 PQTLGLESTFDEVWRCL-GE------EHVGIIGL--YGMGEVGKTTLLTRINNKFSNT--PNGF-DFVIWVVLSRDLQID 123 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L-~~------~~~~vv~I--~G~gGiGKTtLa~~~~~~~~~~--~~~f-~~~~wv~~~~~~~~~ 123 (769)
+.++||+++++++.+++ .. ...+.+.| +|++|+||||||+++++..... ...+ ..++|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999988 42 24567777 9999999999999999886210 0012 246788877777888
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHc--cCCEEEEEecccCcc--------cccccCCCC---CCCC--CCc
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILS--RKKFVLLLDDIWNRV--------DLEKLGIPP---MNTN--GSS 188 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--------~~~~~~~~~---~~~~--~~~ 188 (769)
.++..++++++...+. ...+.......+.+.+. +++++|||||++... .+..+...+ +..+ .+.
T Consensus 102 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 9999999998764321 22344555666666664 678999999997632 122111111 1112 445
Q ss_pred EEEEeeccCCcccccc---------ccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcC------Cch
Q 046742 189 KIVFTTRSAGGCGLME---------AHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECD------GLP 253 (769)
Q Consensus 189 ~iivTtR~~~v~~~~~---------~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g~P 253 (769)
.+|+||+..++...+. ....+++++++.++++++|...+.... ....-..+.++.|++.++ |.|
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL-RDTVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB-CTTSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC-CCCCCChHHHHHHHHHHHHhccCCCcH
Confidence 6888887654321111 112399999999999999976643111 011122577889999999 999
Q ss_pred hHHHHHHHHh---c---CC--CChhHHHHHHHHHH-h--cccCCCChhh-hhhHHhhhcCCC--CCCccchhHHHHHH--
Q 046742 254 LALITIGRAM---A---FK--KTPQEWKDAIQVLR-R--SASEFPGMDE-IKSCFLYCCLFP--EDCDISKIDLIDCW-- 317 (769)
Q Consensus 254 lai~~~~~~l---~---~~--~~~~~w~~~l~~l~-~--~~~~~~~~~~-~k~cfl~~s~fp--~~~~i~~~~li~~w-- 317 (769)
..+..++... + .. -+.+.+..++.... . ....+..+.. .+.++..++.+. .+..+...++...+
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~ 339 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYED 339 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 7665554321 1 11 23444554444332 1 1222333333 566666666542 22344444444333
Q ss_pred hh---cCccc-cchhHhHHHHHHHHhhccccc
Q 046742 318 IG---EGFFD-EYDRGYTIIGDLLRACLLEEV 345 (769)
Q Consensus 318 ~a---~g~~~-~~~~~~~~~~~L~~~sll~~~ 345 (769)
++ .|.-. .......+++.|.+.+++...
T Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 340 ASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 12 12211 112456789999999999764
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=1e-14 Score=154.71 Aligned_cols=238 Identities=16% Similarity=0.142 Sum_probs=135.2
Q ss_pred EeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccc-cccCCcCCCE-EeccCCCC
Q 046742 397 MSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPS-GISRLVSLQH-LNLSLTNI 474 (769)
Q Consensus 397 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~-L~l~~~~l 474 (769)
++.++++++.+|.-- .+++++|++++|.++.+++..|.++++|++|+|++|...+.+|. .|.++.+|+. +.+++|++
T Consensus 14 v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred EEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 444455555555411 24566666666666666666566666666666666644454543 3556666554 44445666
Q ss_pred cccch-hhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcC-cCCcEEEEEeccc
Q 046742 475 KELPE-ELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLM-ENLNVLGINLTSS 552 (769)
Q Consensus 475 ~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~ 552 (769)
..+|. .++.+++|++|++++|. +..+|...+....++..|++.++..+..++.. .+..+ ..++.|+++.+..
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~-----~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-----SFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTT-----SSTTSBSSCEEEECCSSCC
T ss_pred cccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhcccccccccccc-----chhhcchhhhhhccccccc
Confidence 66543 35666666666666664 45555543444555566666554433332211 11222 2355555554444
Q ss_pred hhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccCCcceEEeccccccccccccccCcccccccc
Q 046742 553 HALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSLY 632 (769)
Q Consensus 553 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 632 (769)
..++..... ...+..|.+.+......+....+.++++|+.|+++++ .++.+|. ..+.+|+
T Consensus 167 ~~i~~~~f~---~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~----------------~~~~~L~ 226 (350)
T 4ay9_X 167 QEIHNSAFN---GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS----------------YGLENLK 226 (350)
T ss_dssp CEECTTSST---TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS----------------SSCTTCC
T ss_pred cCCChhhcc---ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh----------------hhhccch
Confidence 333321111 1234444444433333333233677888888988875 4665543 2367888
Q ss_pred EEEEecCcCCcccccccccCCccEEEEee
Q 046742 633 YVVVSDCNKLRNLSWLGLAPNLLTIDILR 661 (769)
Q Consensus 633 ~L~l~~c~~l~~l~~l~~l~~L~~L~l~~ 661 (769)
.|.+.++.+++.+|.+..+++|+.+.+.+
T Consensus 227 ~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 227 KLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp EEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred HhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 88888888888888888888888888864
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=1e-14 Score=150.17 Aligned_cols=172 Identities=26% Similarity=0.329 Sum_probs=136.0
Q ss_pred CCCCcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCC
Q 046742 386 PETGKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQ 465 (769)
Q Consensus 386 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 465 (769)
.....+++++.|++.+|.++.++.+..+++|++|++++|.++.+++ +..+++|++|++++| .++.+| .+..+++|+
T Consensus 40 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~ 115 (291)
T 1h6t_A 40 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLK 115 (291)
T ss_dssp ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCC
T ss_pred cchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCCh-hhccCCCCC
Confidence 3344567889999999999888888889999999999999988876 888999999999999 666666 488999999
Q ss_pred EEeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEE
Q 046742 466 HLNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVL 545 (769)
Q Consensus 466 ~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L 545 (769)
+|++++|.++.++ .+..+++|++|++++|. +..++. ++.+++|++|++++|.+....+ +..+++|+.|
T Consensus 116 ~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--------l~~l~~L~~L 183 (291)
T 1h6t_A 116 SLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISDIVP--------LAGLTKLQNL 183 (291)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCCCGG--------GTTCTTCCEE
T ss_pred EEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCccccchh--------hcCCCccCEE
Confidence 9999999998874 68889999999999986 566643 8899999999999887654322 5677888888
Q ss_pred EEEeccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccC
Q 046742 546 GINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCE 602 (769)
Q Consensus 546 ~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 602 (769)
+++.+....+ .++..+++|+.|++++++
T Consensus 184 ~L~~N~i~~l-----------------------------~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 184 YLSKNHISDL-----------------------------RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp ECCSSCCCBC-----------------------------GGGTTCTTCSEEEEEEEE
T ss_pred ECCCCcCCCC-----------------------------hhhccCCCCCEEECcCCc
Confidence 8775433221 124567788888888754
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=2.1e-15 Score=159.22 Aligned_cols=124 Identities=18% Similarity=0.138 Sum_probs=64.0
Q ss_pred EEEEeecccccccccCCCCC--CCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcc-ccccccCCcCCCEEecc
Q 046742 394 IRRMSLMENQVQSLSKIPSC--PSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQ-LPSGISRLVSLQHLNLS 470 (769)
Q Consensus 394 l~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-lp~~i~~l~~L~~L~l~ 470 (769)
++.+++.++.+.. ..+..+ ++++.|++++|.+...++. +..+++|++|++++|..... +|..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCCH-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 3455555554431 112222 4566666666655555444 33456666666666632222 45555566666666666
Q ss_pred CCCCc-ccchhhhcCCCCcEEecCCCcCcCc--cCcccccCCcccceeeeecc
Q 046742 471 LTNIK-ELPEELKALVNLKCLNLDYTKSLCR--IPRHLISNFSMLYILRIVDC 520 (769)
Q Consensus 471 ~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~ 520 (769)
+|.++ ..|..++.+++|++|++++|..+.. ++.. +.++++|++|++++|
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWC 178 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCC
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCC
Confidence 66555 4455555566666666666532332 3332 455555666666555
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=1.2e-14 Score=149.37 Aligned_cols=168 Identities=25% Similarity=0.242 Sum_probs=138.5
Q ss_pred EEecCCccccCCCCCcceeEEEEeeccccccccc--CCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCc
Q 046742 375 FVQAGARLTEAPETGKWQVIRRMSLMENQVQSLS--KIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLK 452 (769)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 452 (769)
+...+..+..+|... .++++.|++++|.+..++ .+..+++|++|++++|.++.++. ...+++|++|++++| .++
T Consensus 15 l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N-~l~ 90 (290)
T 1p9a_G 15 VNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHN-QLQ 90 (290)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSS-CCS
T ss_pred EECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCC-cCC
Confidence 344555566665322 358999999999998765 37899999999999999998876 378999999999999 788
Q ss_pred cccccccCCcCCCEEeccCCCCcccch-hhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhh
Q 046742 453 QLPSGISRLVSLQHLNLSLTNIKELPE-ELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEV 531 (769)
Q Consensus 453 ~lp~~i~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 531 (769)
.+|..+..+++|++|++++|+++.+|. .+..+++|++|++++|. +..+|.+.+..+++|+.|++++|.+....+
T Consensus 91 ~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~---- 165 (290)
T 1p9a_G 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPA---- 165 (290)
T ss_dssp SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCT----
T ss_pred cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCccCH----
Confidence 999999999999999999999999885 58999999999999997 778888878999999999999998764433
Q ss_pred HHHHhhcCcCCcEEEEEeccch
Q 046742 532 LMEEVLLMENLNVLGINLTSSH 553 (769)
Q Consensus 532 ~~~~l~~l~~L~~L~l~~~~~~ 553 (769)
..+..+++|+.|+++.+...
T Consensus 166 --~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 166 --GLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp --TTTTTCTTCCEEECCSSCCC
T ss_pred --HHhcCcCCCCEEECCCCcCC
Confidence 23456788888887755443
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=2.4e-14 Score=144.18 Aligned_cols=170 Identities=23% Similarity=0.289 Sum_probs=137.9
Q ss_pred EEecCCccccCCCCCcceeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCc
Q 046742 375 FVQAGARLTEAPETGKWQVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLK 452 (769)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 452 (769)
+...+..+..+|..- .++++.|++.+|.+..++. +.++++|++|++++|.++.+++..|..+++|++|+|++| .++
T Consensus 19 l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~ 96 (251)
T 3m19_A 19 VDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLA 96 (251)
T ss_dssp EECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCC
T ss_pred EecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-ccc
Confidence 445555666665422 2579999999999988764 788999999999999999998888899999999999999 555
Q ss_pred ccc-ccccCCcCCCEEeccCCCCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhh
Q 046742 453 QLP-SGISRLVSLQHLNLSLTNIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCE 530 (769)
Q Consensus 453 ~lp-~~i~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 530 (769)
.+| ..+..+.+|++|++++|+++.+|.. ++.+++|++|++++|. +..+|...++.+++|++|++++|.+....+
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--- 172 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPH--- 172 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT---
T ss_pred ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCH---
Confidence 655 5678999999999999999988876 5889999999999996 778887668999999999999988765443
Q ss_pred hHHHHhhcCcCCcEEEEEeccch
Q 046742 531 VLMEEVLLMENLNVLGINLTSSH 553 (769)
Q Consensus 531 ~~~~~l~~l~~L~~L~l~~~~~~ 553 (769)
..+..+++|+.|+++.+...
T Consensus 173 ---~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 173 ---GAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ---TTTTTCTTCCEEECCSCCBC
T ss_pred ---HHHhCCCCCCEEEeeCCcee
Confidence 34567888998888866543
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=5.8e-14 Score=148.80 Aligned_cols=238 Identities=15% Similarity=0.142 Sum_probs=164.6
Q ss_pred cEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccc-cccCCcCCCEEeccCCCCc-ccchh-hhcCCCCcEEecC
Q 046742 417 ITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPS-GISRLVSLQHLNLSLTNIK-ELPEE-LKALVNLKCLNLD 493 (769)
Q Consensus 417 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~-~lp~~-~~~l~~L~~L~l~ 493 (769)
++++.+++.++.+|..+ .+++++|+|++| .++.+|. .|.++++|++|+|++|++. .+|.. +.++++|..+...
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 67888999999998763 368999999999 7888886 5899999999999999875 56654 6889888876555
Q ss_pred CCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEeccchhhhhhhcccccccccceeee
Q 046742 494 YTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTSSHALSKFLSSHRIQSYILHLRL 573 (769)
Q Consensus 494 ~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l 573 (769)
+++.+..+|.+.+..+++|++|++++|.+....+. ......++..+.+..
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~------~~~~~~~l~~l~l~~------------------------ 137 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV------HKIHSLQKVLLDIQD------------------------ 137 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC------TTCCBSSCEEEEEES------------------------
T ss_pred cCCcccccCchhhhhccccccccccccccccCCch------hhcccchhhhhhhcc------------------------
Confidence 54458888877789999999999998876543321 011222233333321
Q ss_pred cccCCCccccccCcccc-cCCCeEEEeccCCcceEEeccccccccccccccCccccccccEEEEecCcCCccccc--ccc
Q 046742 574 ELLEDSRSLNVLPLANI-KNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLSW--LGL 650 (769)
Q Consensus 574 ~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~ 650 (769)
......+....+..+ ..++.|++++ ..++.++.+.. ...+|+.+.+.++..++.++. +..
T Consensus 138 --~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f--------------~~~~L~~l~l~~~n~l~~i~~~~f~~ 200 (350)
T 4ay9_X 138 --NINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAF--------------NGTQLDELNLSDNNNLEELPNDVFHG 200 (350)
T ss_dssp --CTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSS--------------TTEEEEEEECTTCTTCCCCCTTTTTT
T ss_pred --ccccccccccchhhcchhhhhhcccc-ccccCCChhhc--------------cccchhHHhhccCCcccCCCHHHhcc
Confidence 111111111112223 3577888876 45665554332 246788999988888888864 678
Q ss_pred cCCccEEEEeecCcchhhcccccCCccccccCCccccccceecccccccccccCCCCCCCCCccEEEecC
Q 046742 651 APNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKLKSIYPNALPFLHLKEIKVSN 720 (769)
Q Consensus 651 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~ 720 (769)
+++|++|+++++ .++.++. ..|.+|+.|.+.++++++.+|. ...+++|+.+++.+
T Consensus 201 l~~L~~LdLs~N-~l~~lp~-------------~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 201 ASGPVILDISRT-RIHSLPS-------------YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp EECCSEEECTTS-CCCCCCS-------------SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred CcccchhhcCCC-CcCccCh-------------hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 899999999874 5666543 2366777777777888888884 55688888888764
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=3.1e-14 Score=143.27 Aligned_cols=175 Identities=18% Similarity=0.197 Sum_probs=138.5
Q ss_pred eEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCC
Q 046742 393 VIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLT 472 (769)
Q Consensus 393 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 472 (769)
..+++++.++.++.+|... .+.|+.|++++|.++.+++..|..+++|++|+|++|......|..+..+.+|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 3567889999998888632 268999999999999999888999999999999999444444556899999999999999
Q ss_pred CCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEecc
Q 046742 473 NIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTS 551 (769)
Q Consensus 473 ~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 551 (769)
+++.+|.. ++.+++|++|++++|. +..+|...+..+++|++|++++|.+....+ ..+..+++|+.|+++.+.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPA------GAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSC
T ss_pred cccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCH------HHcCcCcCCCEEECCCCc
Confidence 99988865 7899999999999996 778888778999999999999998765433 235677888888877544
Q ss_pred chhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccC
Q 046742 552 SHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCE 602 (769)
Q Consensus 552 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 602 (769)
...++. ..+..+++|+.|++++++
T Consensus 167 l~~~~~---------------------------~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 167 LQSVPH---------------------------GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CSCCCT---------------------------TTTTTCTTCCEEECCSCC
T ss_pred CCccCH---------------------------HHHhCCCCCCEEEeeCCc
Confidence 322110 124566788888887754
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=1.9e-14 Score=138.96 Aligned_cols=152 Identities=16% Similarity=0.183 Sum_probs=127.0
Q ss_pred CcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEe
Q 046742 389 GKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLN 468 (769)
Q Consensus 389 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 468 (769)
..++++++|++++|.++.++.+..+++|++|++++|.++.++. +..+++|++|++++|......|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 4566899999999999988888899999999999998876653 88899999999999954445788899999999999
Q ss_pred ccCCCCcc-cchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEE
Q 046742 469 LSLTNIKE-LPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGI 547 (769)
Q Consensus 469 l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 547 (769)
+++|.++. .|..++.+++|++|++++|..+..+|. +..+++|++|++++|.+.... .+..+++|+.|++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~~--------~l~~l~~L~~L~l 188 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYR--------GIEDFPKLNQLYA 188 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCCT--------TGGGCSSCCEEEE
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcChH--------HhccCCCCCEEEe
Confidence 99999984 777899999999999999976788874 889999999999998765421 4677889999988
Q ss_pred Eeccc
Q 046742 548 NLTSS 552 (769)
Q Consensus 548 ~~~~~ 552 (769)
+.+..
T Consensus 189 ~~N~i 193 (197)
T 4ezg_A 189 FSQTI 193 (197)
T ss_dssp CBC--
T ss_pred eCccc
Confidence 76553
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=3.6e-15 Score=157.47 Aligned_cols=126 Identities=21% Similarity=0.181 Sum_probs=63.9
Q ss_pred ccEEEccCCCCcccchhhhcCC--CcceEEEecCCCCCccccccccCCcCCCEEeccCCCCcc--cchhhhcCCCCcEEe
Q 046742 416 LITLFLNNNNLKVITDGFFQFM--PSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNIKE--LPEELKALVNLKCLN 491 (769)
Q Consensus 416 L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~ 491 (769)
++.++++++.+. +..+..+ +++++|++++| .+...+..+..+.+|++|++++|.+.. +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 555666655443 2234444 55666666665 333333344556666666666665542 555556666666666
Q ss_pred cCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEec
Q 046742 492 LDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLT 550 (769)
Q Consensus 492 l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 550 (769)
+++|......|.. ++.+++|++|++++|..+... .....+..+++|+.|+++.+
T Consensus 125 L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~----~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 125 LEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEF----ALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp CTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHH----HHHHHHHHCTTCCEEECCCC
T ss_pred CcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHH----HHHHHHhcCCCCCEEcCCCC
Confidence 6666432233333 555666666666655322110 01123445566666665544
No 95
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.53 E-value=4.4e-15 Score=169.81 Aligned_cols=306 Identities=14% Similarity=0.113 Sum_probs=194.3
Q ss_pred cceeEEEEeeccccccc-----ccC-CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCC---ccccccccC
Q 046742 390 KWQVIRRMSLMENQVQS-----LSK-IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSL---KQLPSGISR 460 (769)
Q Consensus 390 ~~~~l~~L~l~~~~~~~-----~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~---~~lp~~i~~ 460 (769)
.+++|+.|++.+|.++. ++. +..+++|++|++++|.+..++. .+..+++|++|+++.+... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH-HHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 45689999999988763 222 3578999999999999888764 5888999999999865332 344567788
Q ss_pred CcCCCEEeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCc
Q 046742 461 LVSLQHLNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLME 540 (769)
Q Consensus 461 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~ 540 (769)
+.+|+.|+++++....+|..+..+++|++|++++|..........+..+++|++|++.++ ... .........++
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~-----~~l~~~~~~~~ 342 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGD-----RGLEVLAQYCK 342 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH-----HHHHHHHHHCT
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCH-----HHHHHHHHhCC
Confidence 999999999998777889889999999999999997322222233688999999999832 111 11123346688
Q ss_pred CCcEEEEEe----------ccchhhhhhhcccccccccceeeecccCCCccccccCcc-cccCCCeEEEec---cCCcce
Q 046742 541 NLNVLGINL----------TSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLA-NIKNLESLGFRN---CEKLEE 606 (769)
Q Consensus 541 ~L~~L~l~~----------~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~---~~~l~~ 606 (769)
+|+.|++.. +.......+........+++.|.+ .+..........+. .+++|++|++++ |..++.
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 999999993 222111111111122346677766 22332222222233 378999999985 445553
Q ss_pred EEeccccccccccccccCccccccccEEEEecCcC-Ccc--ccccc-ccCCccEEEEeecCcchhhcccccCCccccccC
Q 046742 607 LKIEIGNIQQNVCVSQVHGFQFHSLYYVVVSDCNK-LRN--LSWLG-LAPNLLTIDILRCPEIEEISGQYSGEVPEMMRN 682 (769)
Q Consensus 607 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~-l~~--l~~l~-~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~ 682 (769)
.+.+.. .. .....+++|++|+++.|.+ ++. +..+. .+++|++|++++|. ++.... + ..
T Consensus 422 ~p~~~~-~~-------~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~------~---~~ 483 (592)
T 3ogk_B 422 LPLDNG-VR-------SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL------M---EF 483 (592)
T ss_dssp CCCHHH-HH-------HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH------H---HH
T ss_pred chHHHH-HH-------HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH------H---HH
Confidence 322100 00 0012378899999987764 222 22233 47889999998764 332110 0 12
Q ss_pred Cccccccceecccccccccc--cCCCCCCCCCccEEEecCCC
Q 046742 683 LNPFARLELLILETLPKLKS--IYPNALPFLHLKEIKVSNCP 722 (769)
Q Consensus 683 ~~~l~~L~~L~l~~c~~L~~--~~~~~~~~~~L~~L~i~~c~ 722 (769)
+..+++|+.|+|++|+ +.. ++.....+++|+.|++++|.
T Consensus 484 ~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 3456889999999987 432 22222345677777777775
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=8e-14 Score=137.96 Aligned_cols=145 Identities=28% Similarity=0.376 Sum_probs=111.5
Q ss_pred ecCCccccCCCCCcceeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc
Q 046742 377 QAGARLTEAPETGKWQVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL 454 (769)
Q Consensus 377 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l 454 (769)
..+..+..+|.. -.+++++|++++|.+..++. +..+++|++|++++|.++.+++..|..+++|++|+|++| .++.+
T Consensus 26 c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l 103 (229)
T 3e6j_A 26 CRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVL 103 (229)
T ss_dssp CTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred ccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCcc
Confidence 344455555532 23678888888888877643 677888888888888888888777888888888888888 55566
Q ss_pred cc-cccCCcCCCEEeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeecccccc
Q 046742 455 PS-GISRLVSLQHLNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFE 524 (769)
Q Consensus 455 p~-~i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~ 524 (769)
|. .+..+.+|++|++++|+++.+|..+..+++|++|++++|. +..+|...+..+++|++|++.+|.+..
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 54 4678888888888888888888888888888888888886 677776667888888888888876543
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=3.1e-14 Score=160.82 Aligned_cols=152 Identities=24% Similarity=0.316 Sum_probs=117.3
Q ss_pred CCCcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCE
Q 046742 387 ETGKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQH 466 (769)
Q Consensus 387 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 466 (769)
....+.+|+.|++.+|.+..++.+..+++|+.|+|++|.+..+++ +..+++|++|+|++| .+..+| .+..+++|++
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCE
T ss_pred chhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCCCCCE
Confidence 344556788888888888888888888888888888888888776 778888888888888 666666 6788888888
Q ss_pred EeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEE
Q 046742 467 LNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLG 546 (769)
Q Consensus 467 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 546 (769)
|+|++|.+..+| .+..+++|+.|+|++|. +..++. +..+++|+.|++++|.+....+ +..+++|+.|+
T Consensus 114 L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~~~~--------l~~l~~L~~L~ 181 (605)
T 1m9s_A 114 LSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISDIVP--------LAGLTKLQNLY 181 (605)
T ss_dssp EECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCCCCGG--------GTTCTTCCEEE
T ss_pred EEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCCCchh--------hccCCCCCEEE
Confidence 888888888774 58888888888888886 566643 7888888888888887654322 56777888888
Q ss_pred EEeccchh
Q 046742 547 INLTSSHA 554 (769)
Q Consensus 547 l~~~~~~~ 554 (769)
++.+....
T Consensus 182 Ls~N~i~~ 189 (605)
T 1m9s_A 182 LSKNHISD 189 (605)
T ss_dssp CCSSCCCB
T ss_pred CcCCCCCC
Confidence 77655443
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.50 E-value=4.2e-15 Score=170.00 Aligned_cols=329 Identities=16% Similarity=0.101 Sum_probs=177.1
Q ss_pred eeEEEEeecccccccc--cCCC-CCCCccEEEccCC-CCccc-chhhhcCCCcceEEEecCCCCCcc----ccccccCCc
Q 046742 392 QVIRRMSLMENQVQSL--SKIP-SCPSLITLFLNNN-NLKVI-TDGFFQFMPSLKVLNLSNNQSLKQ----LPSGISRLV 462 (769)
Q Consensus 392 ~~l~~L~l~~~~~~~~--~~~~-~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~----lp~~i~~l~ 462 (769)
++|++|++.++.+... ..+. .+++|++|++++| .++.. ....+..+++|++|+|++|..... ++.....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4678888887766432 2232 5788899998888 44431 233355788899999988842221 333334677
Q ss_pred CCCEEeccCCC--Cc--ccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhc
Q 046742 463 SLQHLNLSLTN--IK--ELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLL 538 (769)
Q Consensus 463 ~L~~L~l~~~~--l~--~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 538 (769)
+|++|++++|. +. .++.-+.++++|++|++++|..+..+|.. +.++++|++|++..+...-...........+..
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence 88899988886 32 23333466788999999888656666654 778888888887665421111111222335666
Q ss_pred CcCCcEEE-EEeccchhhhhhhcccccccccceeeecccCCCccccccC-cccccCCCeEEEecc-------------CC
Q 046742 539 MENLNVLG-INLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLP-LANIKNLESLGFRNC-------------EK 603 (769)
Q Consensus 539 l~~L~~L~-l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-l~~l~~L~~L~l~~~-------------~~ 603 (769)
+++|+.+. +.......++.. .....+++.|.+.++. ........ +..+++|++|++++| +.
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLPAV---YSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKD 339 (594)
T ss_dssp CTTCCEEECCBTCCGGGGGGG---HHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred CCCcccccCCcccchhhHHHH---HHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCC
Confidence 77777662 221111222211 1123355666655543 22111111 335677777777654 33
Q ss_pred cceEEecc---------ccccccccccccCccccccccEEEEecCcCCccc--cccc-ccCCccEEEEe-----ecCcch
Q 046742 604 LEELKIEI---------GNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNL--SWLG-LAPNLLTIDIL-----RCPEIE 666 (769)
Q Consensus 604 l~~l~~~~---------~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l--~~l~-~l~~L~~L~l~-----~c~~l~ 666 (769)
++.+.... ..+.... ...-...+++|+.|.+ +|..++.. ..+. .+++|+.|+++ +|+.++
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~--l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQG--LVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHH--HHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred CCEEEEecCcccccccCCCCCHHH--HHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 33332211 0000000 0000012567777744 34444432 1222 47788888887 455555
Q ss_pred hhcccccCCccccccCCccccccceecccccccccccCCC-C-CCCCCccEEEecC--------------CCCCCCCCCC
Q 046742 667 EISGQYSGEVPEMMRNLNPFARLELLILETLPKLKSIYPN-A-LPFLHLKEIKVSN--------------CPELKKLPLD 730 (769)
Q Consensus 667 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-~-~~~~~L~~L~i~~--------------c~~L~~L~l~ 730 (769)
..+.. ...+ ..+..+++|+.|++++ .+...... . ..+++|+.|++++ |++|+.|+++
T Consensus 417 ~~~~~--~~~~---~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~ 489 (594)
T 2p1m_B 417 LEPLD--IGFG---AIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489 (594)
T ss_dssp CCCTH--HHHH---HHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEE
T ss_pred CCchh--hHHH---HHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECc
Confidence 32110 0000 0134567888888865 33322111 1 1267788888764 5788888888
Q ss_pred CCCCC
Q 046742 731 SNSAK 735 (769)
Q Consensus 731 ~n~~~ 735 (769)
+|.++
T Consensus 490 ~n~~~ 494 (594)
T 2p1m_B 490 DCPFG 494 (594)
T ss_dssp SCSCC
T ss_pred CCCCc
Confidence 88763
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=8.7e-14 Score=134.29 Aligned_cols=144 Identities=18% Similarity=0.232 Sum_probs=124.0
Q ss_pred EEecCCccccCCCCCcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc
Q 046742 375 FVQAGARLTEAPETGKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL 454 (769)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l 454 (769)
+...+..+..++.+..+++|++|++.+|.+..++.+..+++|++|++++|.++...+..+..+++|++|++++|......
T Consensus 49 L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~ 128 (197)
T 4ezg_A 49 ITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128 (197)
T ss_dssp EEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGG
T ss_pred EeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHh
Confidence 34445566677778888999999999999988888999999999999999998754555899999999999999555567
Q ss_pred cccccCCcCCCEEeccCCC-CcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeecccc
Q 046742 455 PSGISRLVSLQHLNLSLTN-IKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHY 522 (769)
Q Consensus 455 p~~i~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 522 (769)
|..+..+++|++|++++|. ++.+| .+..+++|++|++++|. +..++. +..+++|++|++++|.+
T Consensus 129 ~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 129 LTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp HHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC--
T ss_pred HHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCccc
Confidence 8889999999999999997 88987 79999999999999997 677773 89999999999998865
No 100
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.49 E-value=3.3e-15 Score=165.19 Aligned_cols=313 Identities=17% Similarity=0.167 Sum_probs=168.7
Q ss_pred ceeEEEEeecccccccc--cCC-CCCC----CccEEEccCCCCccc----chhhhcCCCcceEEEecCCCCCcccccccc
Q 046742 391 WQVIRRMSLMENQVQSL--SKI-PSCP----SLITLFLNNNNLKVI----TDGFFQFMPSLKVLNLSNNQSLKQLPSGIS 459 (769)
Q Consensus 391 ~~~l~~L~l~~~~~~~~--~~~-~~~~----~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~ 459 (769)
++++++|++++|.+... ..+ ..+. +|++|++++|.++.. .+..+..+++|++|++++|......+..+.
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 134 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC 134 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHH
Confidence 34677888887776441 111 1222 688888888877632 244467788888888888742222222222
Q ss_pred -----CCcCCCEEeccCCCCcc-----cchhhhcCCCCcEEecCCCcCcCccCccccc-----CCcccceeeeecccccc
Q 046742 460 -----RLVSLQHLNLSLTNIKE-----LPEELKALVNLKCLNLDYTKSLCRIPRHLIS-----NFSMLYILRIVDCHYFE 524 (769)
Q Consensus 460 -----~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~-----~L~~L~~L~l~~~~~~~ 524 (769)
...+|++|++++|.++. ++..+..+++|++|++++|. +...+...+. .+++|++|++++|.+..
T Consensus 135 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 135 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 24568888888887763 45566777888888888876 3322211122 35578888888776543
Q ss_pred ccchhhhHHHHhhcCcCCcEEEEEeccchhhh--hhhcc-cccccccceeeecccCCCcccc---c-cCcccccCCCeEE
Q 046742 525 EVENCEVLMEEVLLMENLNVLGINLTSSHALS--KFLSS-HRIQSYILHLRLELLEDSRSLN---V-LPLANIKNLESLG 597 (769)
Q Consensus 525 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~-~~~~~~l~~L~l~~~~~~~~~~---~-~~l~~l~~L~~L~ 597 (769)
.. .......+..+++|+.|+++.+...... .+... ......++.|.+.++.- .... . ..+..+++|++|+
T Consensus 214 ~~--~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L~~L~ 290 (461)
T 1z7x_W 214 DN--CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI-TAKGCGDLCRVLRAKESLKELS 290 (461)
T ss_dssp TH--HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-CHHHHHHHHHHHHHCTTCCEEE
T ss_pred HH--HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC-CHHHHHHHHHHHhhCCCcceEE
Confidence 21 1122345667788888888776543321 11110 00123555555554321 1111 0 1144567788888
Q ss_pred EeccCCcceEEeccccccccccccccCccccccccEEEEecCcCCccc------ccccccCCccEEEEeecCcchhhccc
Q 046742 598 FRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNL------SWLGLAPNLLTIDILRCPEIEEISGQ 671 (769)
Q Consensus 598 l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l------~~l~~l~~L~~L~l~~c~~l~~l~~~ 671 (769)
++++. +...... .+. .......++|++|++++|. ++.. ..+..+++|++|+++++ .+......
T Consensus 291 Ls~n~-i~~~~~~--~l~------~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~ 359 (461)
T 1z7x_W 291 LAGNE-LGDEGAR--LLC------ETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVR 359 (461)
T ss_dssp CTTCC-CHHHHHH--HHH------HHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHH
T ss_pred CCCCC-CchHHHH--HHH------HHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHH
Confidence 87753 2211000 000 0000123588888888884 4332 23556788999998876 34433210
Q ss_pred ccCCccccccCC-ccccccceeccccccccc-----ccCCCCCCCCCccEEEecCCCCCCCCCCCCCCCCC
Q 046742 672 YSGEVPEMMRNL-NPFARLELLILETLPKLK-----SIYPNALPFLHLKEIKVSNCPELKKLPLDSNSAKG 736 (769)
Q Consensus 672 ~~~~~~~~~~~~-~~l~~L~~L~l~~c~~L~-----~~~~~~~~~~~L~~L~i~~c~~L~~L~l~~n~~~~ 736 (769)
... ..+ ...++|+.|++++| .+. .++.. +..|++|+.|++++|.++.
T Consensus 360 ~l~------~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~-----------l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 360 ELC------QGLGQPGSVLRVLWLADC-DVSDSSCSSLAAT-----------LLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHH------HHHTSTTCCCCEEECTTS-CCCHHHHHHHHHH-----------HHHCCCCCEEECCSSSCCH
T ss_pred HHH------HHHcCCCCceEEEECCCC-CCChhhHHHHHHH-----------HHhCCCccEEECCCCCCCH
Confidence 000 011 12568888888886 444 33332 2345566666666666543
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=2.2e-13 Score=140.08 Aligned_cols=164 Identities=20% Similarity=0.309 Sum_probs=140.8
Q ss_pred EEEecCCccccCCCCCcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcc
Q 046742 374 FFVQAGARLTEAPETGKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQ 453 (769)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 453 (769)
.+...+..+..++.+..+++|++|++++|.++.++.+..+++|++|++++|.++.++. +..+++|++|++++| .+..
T Consensus 50 ~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n-~i~~ 126 (291)
T 1h6t_A 50 QIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN-GISD 126 (291)
T ss_dssp EEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTS-CCCC
T ss_pred EEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCC-cCCC
Confidence 3444555666777788889999999999999998889999999999999999988765 899999999999999 6767
Q ss_pred ccccccCCcCCCEEeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHH
Q 046742 454 LPSGISRLVSLQHLNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLM 533 (769)
Q Consensus 454 lp~~i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 533 (769)
++ .+..+++|++|++++|+++.+ ..++.+++|++|++++|. +..++. +..+++|++|++++|.+...
T Consensus 127 ~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~~l-------- 193 (291)
T 1h6t_A 127 IN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISDL-------- 193 (291)
T ss_dssp CG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCBC--------
T ss_pred Ch-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCCCC--------
Confidence 65 688999999999999999988 579999999999999997 677766 88999999999999976543
Q ss_pred HHhhcCcCCcEEEEEeccch
Q 046742 534 EEVLLMENLNVLGINLTSSH 553 (769)
Q Consensus 534 ~~l~~l~~L~~L~l~~~~~~ 553 (769)
..+..+++|+.|+++.+...
T Consensus 194 ~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 194 RALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp GGGTTCTTCSEEEEEEEEEE
T ss_pred hhhccCCCCCEEECcCCccc
Confidence 23678899999999876543
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=1.5e-14 Score=155.67 Aligned_cols=156 Identities=11% Similarity=0.053 Sum_probs=93.7
Q ss_pred EEEEeecccccccccC-CCCCCCccEEEccCCCCcccch----hhhcCCCcceEEEecCCCCCc----cccccc------
Q 046742 394 IRRMSLMENQVQSLSK-IPSCPSLITLFLNNNNLKVITD----GFFQFMPSLKVLNLSNNQSLK----QLPSGI------ 458 (769)
Q Consensus 394 l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~~~~----~lp~~i------ 458 (769)
++...+....+..++. +..+++|++|++++|.+..... ..+..+++|++|+|++| .+. .+|..+
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHH
Confidence 3333344444444332 4567778888888887665432 22567788888888876 222 344433
Q ss_pred -cCCcCCCEEeccCCCCcc-----cchhhhcCCCCcEEecCCCcCcCccCcc---cccCC---------cccceeeeecc
Q 046742 459 -SRLVSLQHLNLSLTNIKE-----LPEELKALVNLKCLNLDYTKSLCRIPRH---LISNF---------SMLYILRIVDC 520 (769)
Q Consensus 459 -~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l~~~p~~---~i~~L---------~~L~~L~l~~~ 520 (769)
..+++|++|++++|.+.. +|..+..+++|++|++++|......+.. .+..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 677888888888887775 6777788888888888888632111111 12333 77888888877
Q ss_pred ccccccchhhhHHHHhhcCcCCcEEEEEeccc
Q 046742 521 HYFEEVENCEVLMEEVLLMENLNVLGINLTSS 552 (769)
Q Consensus 521 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 552 (769)
.+.... .......+..+++|+.|+++.+..
T Consensus 170 ~l~~~~--~~~l~~~l~~~~~L~~L~L~~n~l 199 (386)
T 2ca6_A 170 RLENGS--MKEWAKTFQSHRLLHTVKMVQNGI 199 (386)
T ss_dssp CCTGGG--HHHHHHHHHHCTTCCEEECCSSCC
T ss_pred CCCcHH--HHHHHHHHHhCCCcCEEECcCCCC
Confidence 654211 111223456677777777765543
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=1.7e-13 Score=134.66 Aligned_cols=129 Identities=26% Similarity=0.357 Sum_probs=72.9
Q ss_pred eeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcccccc-ccCCcCCCEEe
Q 046742 392 QVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSG-ISRLVSLQHLN 468 (769)
Q Consensus 392 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~ 468 (769)
++++.|++.+|.++.++. +..+++|++|++++|.++.+.+..|..+++|++|+|++| .++.+|.. +..+.+|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence 355666666666555542 455566666666666665555545566666666666666 44444443 45566666666
Q ss_pred ccCCCCcccc-hhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeecccc
Q 046742 469 LSLTNIKELP-EELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHY 522 (769)
Q Consensus 469 l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 522 (769)
+++|+++.++ ..+..+++|++|++++|. +..++...+..+++|++|++++|.+
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 6666665543 335556666666666654 4455544455566666666665543
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=8.6e-14 Score=157.18 Aligned_cols=140 Identities=22% Similarity=0.321 Sum_probs=108.7
Q ss_pred eEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCC
Q 046742 393 VIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLT 472 (769)
Q Consensus 393 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 472 (769)
.+..+.+..+.+..+.....+.+|+.|++++|.+..++. +..+++|++|+|++| .+..+|. +..+++|++|+|++|
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC
Confidence 344455555666666666778889999999999888864 888999999999999 6666765 889999999999999
Q ss_pred CCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEE
Q 046742 473 NIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGIN 548 (769)
Q Consensus 473 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 548 (769)
.+..+| .+..+++|+.|++++|. +..++. +..|++|+.|++++|.+... ..+..+++|+.|+++
T Consensus 98 ~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 98 KIKDLS-SLKDLKKLKSLSLEHNG-ISDING--LVHLPQLESLYLGNNKITDI--------TVLSRLTKLDTLSLE 161 (605)
T ss_dssp CCCCCT-TSTTCTTCCEEECTTSC-CCCCGG--GGGCTTCSEEECCSSCCCCC--------GGGGSCTTCSEEECC
T ss_pred CCCCCh-hhccCCCCCEEEecCCC-CCCCcc--ccCCCccCEEECCCCccCCc--------hhhcccCCCCEEECc
Confidence 998876 68899999999999997 566654 88899999999998865432 234556666666555
No 105
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.47 E-value=1.4e-14 Score=165.78 Aligned_cols=82 Identities=22% Similarity=0.329 Sum_probs=47.1
Q ss_pred cceeEEEEeeccccccc-----ccCC-CCCCCccEEEccCCCCcccc----hhhhcCCCcceEEEecCCCCCcccccccc
Q 046742 390 KWQVIRRMSLMENQVQS-----LSKI-PSCPSLITLFLNNNNLKVIT----DGFFQFMPSLKVLNLSNNQSLKQLPSGIS 459 (769)
Q Consensus 390 ~~~~l~~L~l~~~~~~~-----~~~~-~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~~~~~~~lp~~i~ 459 (769)
.+++|++|++.+|.+.. ++.+ ..+++|++|++++|. ..+. ...+..+++|++|++++|..++.+|..+.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~ 232 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence 34567777777666433 2222 356677777777765 1222 11234457777777777655555666666
Q ss_pred CCcCCCEEeccCC
Q 046742 460 RLVSLQHLNLSLT 472 (769)
Q Consensus 460 ~l~~L~~L~l~~~ 472 (769)
.+++|++|+++.+
T Consensus 233 ~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 233 RAPQLEELGTGGY 245 (594)
T ss_dssp HCTTCSEEECSBC
T ss_pred cCCcceEcccccc
Confidence 6667777765443
No 106
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.47 E-value=3.4e-14 Score=148.01 Aligned_cols=34 Identities=9% Similarity=0.031 Sum_probs=22.8
Q ss_pred cCCCeEEEeccCCcceEEeccccccccccccccCccccccccEEEEecCc
Q 046742 591 KNLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSLYYVVVSDCN 640 (769)
Q Consensus 591 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 640 (769)
++|++|+++++ .++.+|. + ..+++|+.|++++++
T Consensus 274 ~~L~~L~Ls~N-~l~~~p~-~--------------~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 274 AKLSVLDLSYN-RLDRNPS-P--------------DELPQVGNLSLKGNP 307 (312)
T ss_dssp SEEEEEECCSS-CCCSCCC-T--------------TTSCEEEEEECTTCT
T ss_pred CCceEEECCCC-CCCCChh-H--------------hhCCCCCEEeccCCC
Confidence 67888888775 3444422 1 247888888888774
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=9.9e-14 Score=140.37 Aligned_cols=154 Identities=19% Similarity=0.233 Sum_probs=130.3
Q ss_pred ccCCCCCcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCc
Q 046742 383 TEAPETGKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLV 462 (769)
Q Consensus 383 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~ 462 (769)
.+++....++++++|++.+|.++.++.+..+++|++|++++|.++.+++ +..+++|++|++++| .++.+|.... .
T Consensus 32 ~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~~~--~ 106 (263)
T 1xeu_A 32 TDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGIPS--A 106 (263)
T ss_dssp TSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTCCC--S
T ss_pred ccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCcccc--C
Confidence 3444456677899999999999999888999999999999999999887 889999999999999 6777775443 8
Q ss_pred CCCEEeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCC
Q 046742 463 SLQHLNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENL 542 (769)
Q Consensus 463 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L 542 (769)
+|++|++++|+++.+| .++.+++|+.|++++|. +..+|. +..+++|++|++++|.+... ..+..+++|
T Consensus 107 ~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~~--------~~l~~l~~L 174 (263)
T 1xeu_A 107 CLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITNT--------GGLTRLKKV 174 (263)
T ss_dssp SCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCBC--------TTSTTCCCC
T ss_pred cccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcch--------HHhccCCCC
Confidence 9999999999999886 59999999999999997 677764 88999999999999887554 346778899
Q ss_pred cEEEEEeccch
Q 046742 543 NVLGINLTSSH 553 (769)
Q Consensus 543 ~~L~l~~~~~~ 553 (769)
+.|+++.+...
T Consensus 175 ~~L~l~~N~~~ 185 (263)
T 1xeu_A 175 NWIDLTGQKCV 185 (263)
T ss_dssp CEEEEEEEEEE
T ss_pred CEEeCCCCccc
Confidence 99999876654
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=2.3e-13 Score=133.73 Aligned_cols=150 Identities=21% Similarity=0.266 Sum_probs=126.1
Q ss_pred EEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCCCC
Q 046742 395 RRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNI 474 (769)
Q Consensus 395 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l 474 (769)
+.+++.++.++.+|... .++|+.|++++|.++.+++..|..+++|++|+|++|......|..+..+.+|++|++++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 45777888888887632 27899999999999999988899999999999999944444488899999999999999999
Q ss_pred cccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEeccc
Q 046742 475 KELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTSS 552 (769)
Q Consensus 475 ~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 552 (769)
+.+|.. +..+++|++|++++|. +..++...+..+++|++|++++|.+....+ ..+..+++|+.++++.+..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAK------GTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECCSSCE
T ss_pred CccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECH------HHHhCCCCCCEEEeCCCCc
Confidence 999987 6889999999999997 677766669999999999999998765543 3356788899998876654
No 109
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=8.3e-14 Score=144.98 Aligned_cols=153 Identities=14% Similarity=0.096 Sum_probs=104.8
Q ss_pred eEEEEeecccccc-----cccCCCCCCCccEEEccCCCCcccchhhh--cCCCcceEEEecCCCCCcccc----ccccCC
Q 046742 393 VIRRMSLMENQVQ-----SLSKIPSCPSLITLFLNNNNLKVITDGFF--QFMPSLKVLNLSNNQSLKQLP----SGISRL 461 (769)
Q Consensus 393 ~l~~L~l~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~L~~~~~~~~lp----~~i~~l 461 (769)
.++.+.+.+..+. .+.....+++|++|++++|.+....+..+ ..+++|++|+|++|......| ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4566666655443 23333445679999999999886655545 889999999999995444433 345678
Q ss_pred cCCCEEeccCCCCcccc-hhhhcCCCCcEEecCCCcCcCc--cCc-ccccCCcccceeeeeccccccccchhhhHHHH-h
Q 046742 462 VSLQHLNLSLTNIKELP-EELKALVNLKCLNLDYTKSLCR--IPR-HLISNFSMLYILRIVDCHYFEEVENCEVLMEE-V 536 (769)
Q Consensus 462 ~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~--~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~-l 536 (769)
++|++|++++|.+..+| ..++.+++|++|++++|+.... ++. ..++.+++|++|++++|.+..... .... +
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~l~ 220 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG----VCAALA 220 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH----HHHHHH
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH----HHHHHH
Confidence 99999999999998766 4688999999999999974332 322 224688999999999987642211 1111 3
Q ss_pred hcCcCCcEEEEEe
Q 046742 537 LLMENLNVLGINL 549 (769)
Q Consensus 537 ~~l~~L~~L~l~~ 549 (769)
..+++|+.|+++.
T Consensus 221 ~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 221 AAGVQPHSLDLSH 233 (310)
T ss_dssp HHTCCCSSEECTT
T ss_pred hcCCCCCEEECCC
Confidence 4556666666553
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=6e-13 Score=129.64 Aligned_cols=144 Identities=28% Similarity=0.419 Sum_probs=114.5
Q ss_pred cCCccccCCCCCcceeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcccc
Q 046742 378 AGARLTEAPETGKWQVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLP 455 (769)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp 455 (769)
.+.++..+|. ...+++++|++.+|.++.++. +..+++|++|++++|.++.+++..|..+++|++|++++| .+..+|
T Consensus 15 ~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~ 92 (208)
T 2o6s_A 15 YSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLP 92 (208)
T ss_dssp CSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred cCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccC
Confidence 3444444442 223578899999998887765 678899999999999998888887888999999999998 566665
Q ss_pred c-cccCCcCCCEEeccCCCCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeecccccc
Q 046742 456 S-GISRLVSLQHLNLSLTNIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFE 524 (769)
Q Consensus 456 ~-~i~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~ 524 (769)
. .+..+++|++|++++|+++.+|.. ++.+++|++|++++|. +..+|...+..+++|++|++++|.+..
T Consensus 93 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCeec
Confidence 4 468899999999999999888776 6889999999999986 667777667889999999999886543
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=2.8e-13 Score=133.03 Aligned_cols=127 Identities=19% Similarity=0.289 Sum_probs=65.3
Q ss_pred EEEEeecccccccccC---CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcccc-ccccCCcCCCEEec
Q 046742 394 IRRMSLMENQVQSLSK---IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLP-SGISRLVSLQHLNL 469 (769)
Q Consensus 394 l~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l 469 (769)
++.|++++|.++.++. +..+++|++|++++|.++.+++..|..+++|++|+|++| .+..+| ..+..+++|++|++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEEC
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEEC
Confidence 4455555555554422 345555555555555555555544555555555555555 233332 23555555555555
Q ss_pred cCCCCccc-chhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeecccc
Q 046742 470 SLTNIKEL-PEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHY 522 (769)
Q Consensus 470 ~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 522 (769)
++|+++.+ |..+..+++|++|++++|. +..+++..+..+++|++|++++|.+
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence 55555544 3335555555555555554 3444333355555555555555543
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.42 E-value=2.3e-13 Score=144.89 Aligned_cols=262 Identities=16% Similarity=0.112 Sum_probs=149.1
Q ss_pred Eeeccccccc-ccCC-CCCCCccEEEccCCCCcccch----hhhcCCC-cceEEEecCCCCCccccccccCC-----cCC
Q 046742 397 MSLMENQVQS-LSKI-PSCPSLITLFLNNNNLKVITD----GFFQFMP-SLKVLNLSNNQSLKQLPSGISRL-----VSL 464 (769)
Q Consensus 397 L~l~~~~~~~-~~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~L~~~~~~~~lp~~i~~l-----~~L 464 (769)
+.++.|.+.. +|.+ ...++|++|++++|.++..+. ..+..++ +|++|+|++|......+..+..+ .+|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3455565553 3333 334558889999888887776 5577788 89999999884333445556554 888
Q ss_pred CEEeccCCCCcccchh-----hhcC-CCCcEEecCCCcCcCccCcccc----cC-CcccceeeeeccccccccchhhhHH
Q 046742 465 QHLNLSLTNIKELPEE-----LKAL-VNLKCLNLDYTKSLCRIPRHLI----SN-FSMLYILRIVDCHYFEEVENCEVLM 533 (769)
Q Consensus 465 ~~L~l~~~~l~~lp~~-----~~~l-~~L~~L~l~~~~~l~~~p~~~i----~~-L~~L~~L~l~~~~~~~~~~~~~~~~ 533 (769)
++|++++|.++..+.. +..+ ++|++|++++|. +...+...+ .. .++|++|++++|.+..... ....
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~--~~l~ 159 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS--DELI 159 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH--HHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH--HHHH
Confidence 9999998888754432 4445 788999998887 555554322 33 3688888888887653221 1222
Q ss_pred HHhhcCc-CCcEEEEEeccchhhhhhhcccccccccceeeecccCCCccccccCcccc-cCCCeEEEeccCCcceEEecc
Q 046742 534 EEVLLME-NLNVLGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANI-KNLESLGFRNCEKLEELKIEI 611 (769)
Q Consensus 534 ~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~l~~l~~~~ 611 (769)
..+..++ +|+.|+++.+........ .+. ..+..+ ++|++|++++|. +.....
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~----------------------~l~-~~l~~~~~~L~~L~Ls~N~-i~~~~~-- 213 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCA----------------------ELA-KFLASIPASVTSLDLSANL-LGLKSY-- 213 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHH----------------------HHH-HHHHTSCTTCCEEECTTSC-GGGSCH--
T ss_pred HHHhcCCccccEeeecCCCCchhhHH----------------------HHH-HHHHhCCCCCCEEECCCCC-CChhHH--
Confidence 3445554 777777665443221100 000 012233 478888887754 332100
Q ss_pred ccccccccccccCccccccccEEEEecCcCCcccc------cccccCCccEEEEeecCcchhhcccccCCccccccCCcc
Q 046742 612 GNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLS------WLGLAPNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNP 685 (769)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~------~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~ 685 (769)
..+... .....++|+.|++++| .++..+ .+..+++|++|++++|. +..+....... ....+..
T Consensus 214 ~~l~~~------l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~---l~~~~~~ 282 (362)
T 3goz_A 214 AELAYI------FSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKA---LGAAFPN 282 (362)
T ss_dssp HHHHHH------HHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHH---HHTTSTT
T ss_pred HHHHHH------HhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHH---HHHHhcc
Confidence 000000 0001247888888887 444432 13567888888888764 11111100000 0124556
Q ss_pred ccccceecccccc
Q 046742 686 FARLELLILETLP 698 (769)
Q Consensus 686 l~~L~~L~l~~c~ 698 (769)
+++|+.|++++++
T Consensus 283 l~~L~~LdL~~N~ 295 (362)
T 3goz_A 283 IQKIILVDKNGKE 295 (362)
T ss_dssp CCEEEEECTTSCB
T ss_pred CCceEEEecCCCc
Confidence 7888888888743
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.42 E-value=7e-13 Score=130.20 Aligned_cols=149 Identities=17% Similarity=0.284 Sum_probs=124.4
Q ss_pred EEEeecccccccccCCCCCCCccEEEccCCCCcccc-hhhhcCCCcceEEEecCCCCCcccc-ccccCCcCCCEEeccCC
Q 046742 395 RRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVIT-DGFFQFMPSLKVLNLSNNQSLKQLP-SGISRLVSLQHLNLSLT 472 (769)
Q Consensus 395 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~ 472 (769)
+.+++++|.++.+|.. -...+++|++++|.++.++ ...|..+++|++|+|++| .++.++ ..+..+.+|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC
Confidence 4788999999888762 2456799999999999884 456899999999999999 566665 47999999999999999
Q ss_pred CCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEecc
Q 046742 473 NIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTS 551 (769)
Q Consensus 473 ~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 551 (769)
.++.+|.. ++.+++|++|++++|. +..++...+.++++|++|++++|.+....+ ..+..+++|+.|+++.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAP------GAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCT------TTTTTCTTCCEEECCSCC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECH------HHhcCCCCCCEEEecCcC
Confidence 99988765 8999999999999997 666755559999999999999998866544 446778899999988665
Q ss_pred c
Q 046742 552 S 552 (769)
Q Consensus 552 ~ 552 (769)
.
T Consensus 165 l 165 (220)
T 2v70_A 165 F 165 (220)
T ss_dssp E
T ss_pred C
Confidence 4
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=6.6e-14 Score=141.66 Aligned_cols=167 Identities=20% Similarity=0.237 Sum_probs=135.6
Q ss_pred cceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEec
Q 046742 390 KWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNL 469 (769)
Q Consensus 390 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 469 (769)
.+.++..+++..+.++.++.+..+++|++|++++|.++.++. +..+++|++|++++| .+..+|. +..+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 455677788888888888888899999999999999998873 889999999999999 6777876 999999999999
Q ss_pred cCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEe
Q 046742 470 SLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINL 549 (769)
Q Consensus 470 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 549 (769)
++|+++.+|.... ++|++|++++|. +..++. +.++++|++|++++|.+... ..+..+++|+.|+++.
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~~~--------~~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNE-LRDTDS--LIHLKNLEILSIRNNKLKSI--------VMLGFLSKLEVLDLHG 159 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSC-CSBSGG--GTTCTTCCEEECTTSCCCBC--------GGGGGCTTCCEEECTT
T ss_pred CCCccCCcCcccc--CcccEEEccCCc-cCCChh--hcCcccccEEECCCCcCCCC--------hHHccCCCCCEEECCC
Confidence 9999999876444 999999999996 677764 89999999999999886543 1366778888887764
Q ss_pred ccchhhhhhhcccccccccceeeecccCCCccccccCcccccCCCeEEEeccC
Q 046742 550 TSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIKNLESLGFRNCE 602 (769)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 602 (769)
+..... ..+..+++|+.|++++++
T Consensus 160 N~i~~~-----------------------------~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 160 NEITNT-----------------------------GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp SCCCBC-----------------------------TTSTTCCCCCEEEEEEEE
T ss_pred CcCcch-----------------------------HHhccCCCCCEEeCCCCc
Confidence 433211 225567889999998764
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=5.9e-13 Score=129.70 Aligned_cols=147 Identities=24% Similarity=0.320 Sum_probs=119.5
Q ss_pred EEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccc-cccCCcCCCEEeccCCC
Q 046742 395 RRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPS-GISRLVSLQHLNLSLTN 473 (769)
Q Consensus 395 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 473 (769)
+.++..++.+..+|. .-.++|++|++++|.++.+++..|..+++|++|++++| .++.+|. .+..+.+|++|++++|+
T Consensus 10 ~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc
Confidence 355666777777764 23568999999999999999888899999999999999 6667665 46899999999999999
Q ss_pred Ccccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEec
Q 046742 474 IKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLT 550 (769)
Q Consensus 474 l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 550 (769)
++.+|.. ++.+++|++|++++|. +..+|...+.++++|++|++++|.+....+ ..+..+++|+.|+++.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPD------GVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECCSC
T ss_pred CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCH------HHhccCCCccEEEecCC
Confidence 9988876 6899999999999997 678887768999999999999987654333 22456777777776644
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=2.4e-13 Score=128.56 Aligned_cols=127 Identities=17% Similarity=0.250 Sum_probs=77.2
Q ss_pred ceeEEEEeecccccccccCCCCCC-CccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccc-cCCcCCCEEe
Q 046742 391 WQVIRRMSLMENQVQSLSKIPSCP-SLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGI-SRLVSLQHLN 468 (769)
Q Consensus 391 ~~~l~~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i-~~l~~L~~L~ 468 (769)
+.+++.|++.+|.++.++.+..+. +|++|++++|.++.++ .+..+++|++|++++| .+..+|..+ ..+++|++|+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEE
Confidence 345666666666666665554444 6666666666666652 2566666666666666 455555433 6666666666
Q ss_pred ccCCCCcccch--hhhcCCCCcEEecCCCcCcCccCcc---cccCCcccceeeeeccc
Q 046742 469 LSLTNIKELPE--ELKALVNLKCLNLDYTKSLCRIPRH---LISNFSMLYILRIVDCH 521 (769)
Q Consensus 469 l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~~p~~---~i~~L~~L~~L~l~~~~ 521 (769)
+++|.+..+|. .++.+++|++|++++|+ +..+|.. .+..+++|+.|++++|.
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 66666666665 56666666666666665 4455543 35566666666666544
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.40 E-value=4.1e-13 Score=125.96 Aligned_cols=130 Identities=27% Similarity=0.290 Sum_probs=97.4
Q ss_pred eeEEEEeecccccc--cccCC-CCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEe
Q 046742 392 QVIRRMSLMENQVQ--SLSKI-PSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLN 468 (769)
Q Consensus 392 ~~l~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 468 (769)
++++.|++.+|.+. .+|.. ..+++|++|++++|.++.+ ..+..+++|++|++++|.....+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 46788888888877 66663 6778888888888887777 3377788888888888843333776777788888888
Q ss_pred ccCCCCcccc--hhhhcCCCCcEEecCCCcCcCccCc---ccccCCcccceeeeecccccc
Q 046742 469 LSLTNIKELP--EELKALVNLKCLNLDYTKSLCRIPR---HLISNFSMLYILRIVDCHYFE 524 (769)
Q Consensus 469 l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~~p~---~~i~~L~~L~~L~l~~~~~~~ 524 (769)
+++|.++.+| ..++.+++|++|++++|. +..+|. ..+..+++|++|++++|....
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 8888888776 567888888888888886 556665 347788888888888776543
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=7.5e-13 Score=140.80 Aligned_cols=169 Identities=22% Similarity=0.301 Sum_probs=130.8
Q ss_pred EEecCCccccCCCCCcceeEEEEeecccccccccC--CC-CCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCC
Q 046742 375 FVQAGARLTEAPETGKWQVIRRMSLMENQVQSLSK--IP-SCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSL 451 (769)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 451 (769)
+...+..+..+|.. -...++.|++++|.++.++. +. ++++|++|++++|.++.+++..|..+++|++|+|++| .+
T Consensus 23 l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l 100 (361)
T 2xot_A 23 LSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HL 100 (361)
T ss_dssp EECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred EEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cC
Confidence 44455566666542 23468899999999988765 44 8999999999999999999888999999999999999 56
Q ss_pred ccccc-cccCCcCCCEEeccCCCCccc-chhhhcCCCCcEEecCCCcCcCccCcccc---cCCcccceeeeecccccccc
Q 046742 452 KQLPS-GISRLVSLQHLNLSLTNIKEL-PEELKALVNLKCLNLDYTKSLCRIPRHLI---SNFSMLYILRIVDCHYFEEV 526 (769)
Q Consensus 452 ~~lp~-~i~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~i---~~L~~L~~L~l~~~~~~~~~ 526 (769)
..+|. .+..+.+|++|++++|++..+ |..+..+++|++|++++|. +..+|...+ ..+++|++|++++|.+....
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 66654 588999999999999999977 4568999999999999996 788888755 67999999999998876443
Q ss_pred chhhhHHHHhhcCcC--CcEEEEEeccc
Q 046742 527 ENCEVLMEEVLLMEN--LNVLGINLTSS 552 (769)
Q Consensus 527 ~~~~~~~~~l~~l~~--L~~L~l~~~~~ 552 (769)
. ..+..++. ++.|.+..+..
T Consensus 180 ~------~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 180 L------TDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp H------HHHHHSCHHHHTTEECCSSCE
T ss_pred H------HHhhhccHhhcceEEecCCCc
Confidence 2 34455554 35666665443
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=1.1e-12 Score=129.61 Aligned_cols=149 Identities=22% Similarity=0.240 Sum_probs=126.0
Q ss_pred EEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccc-cccCCcCCCEEeccCC
Q 046742 394 IRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPS-GISRLVSLQHLNLSLT 472 (769)
Q Consensus 394 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~ 472 (769)
.+.++..++.+..+|... .++|++|++++|.++.+++..|..+++|++|+|++| .++.+|. .+..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC
Confidence 456788888888887632 389999999999999998888999999999999999 6677775 4689999999999999
Q ss_pred CCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEecc
Q 046742 473 NIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTS 551 (769)
Q Consensus 473 ~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 551 (769)
+++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|.+....+ ..+..+++|+.|.+..+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKSIPH------GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCCCCT------TTTTTCTTCCEEECTTSC
T ss_pred cCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCccCH------HHHhCCCCCCEEEeeCCC
Confidence 99998876 6899999999999997 7799987 7999999999999998765433 345678888888887654
Q ss_pred c
Q 046742 552 S 552 (769)
Q Consensus 552 ~ 552 (769)
.
T Consensus 171 ~ 171 (229)
T 3e6j_A 171 W 171 (229)
T ss_dssp B
T ss_pred c
Confidence 3
No 120
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.40 E-value=2.1e-13 Score=146.77 Aligned_cols=239 Identities=18% Similarity=0.213 Sum_probs=152.1
Q ss_pred cceeEEEEeecccccccc-----c-CCCCCCCccEEEccCCCCccc----chhh------hcCCCcceEEEecCCCCCc-
Q 046742 390 KWQVIRRMSLMENQVQSL-----S-KIPSCPSLITLFLNNNNLKVI----TDGF------FQFMPSLKVLNLSNNQSLK- 452 (769)
Q Consensus 390 ~~~~l~~L~l~~~~~~~~-----~-~~~~~~~L~~L~l~~~~~~~~----~~~~------~~~l~~L~~L~L~~~~~~~- 452 (769)
.++++++|++++|.+... + .+..+++|++|++++|.+..+ |... +..+++|++|+|++|....
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 456799999999988653 2 267899999999999855432 3332 4789999999999994443
Q ss_pred ---cccccccCCcCCCEEeccCCCCcc-----cchhhhcC---------CCCcEEecCCCcCc-CccCc--ccccCCccc
Q 046742 453 ---QLPSGISRLVSLQHLNLSLTNIKE-----LPEELKAL---------VNLKCLNLDYTKSL-CRIPR--HLISNFSML 512 (769)
Q Consensus 453 ---~lp~~i~~l~~L~~L~l~~~~l~~-----lp~~~~~l---------~~L~~L~l~~~~~l-~~~p~--~~i~~L~~L 512 (769)
.+|..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|... ..+|. ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 378889999999999999999873 44445555 99999999999743 24442 236789999
Q ss_pred ceeeeeccccccccchhhhHHH-HhhcCcCCcEEEEEeccchhhhhhhcccccccccceeeecccCCCccccccCccccc
Q 046742 513 YILRIVDCHYFEEVENCEVLME-EVLLMENLNVLGINLTSSHALSKFLSSHRIQSYILHLRLELLEDSRSLNVLPLANIK 591 (769)
Q Consensus 513 ~~L~l~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~ 591 (769)
++|++++|.+... ....... .+..+++|+.|+++.+........ .+. ..+..++
T Consensus 190 ~~L~L~~n~l~~~--g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~----------------------~l~-~~l~~~~ 244 (386)
T 2ca6_A 190 HTVKMVQNGIRPE--GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS----------------------ALA-IALKSWP 244 (386)
T ss_dssp CEEECCSSCCCHH--HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH----------------------HHH-HHGGGCT
T ss_pred CEEECcCCCCCHh--HHHHHHHHHhhcCCCccEEECcCCCCCcHHHH----------------------HHH-HHHccCC
Confidence 9999999876422 1111223 566778888888876654321000 000 0134567
Q ss_pred CCCeEEEeccCCcceEEeccccccccccccccCccccccccEEEEecCcCCcc-----ccc-c-cccCCccEEEEeec
Q 046742 592 NLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQFHSLYYVVVSDCNKLRN-----LSW-L-GLAPNLLTIDILRC 662 (769)
Q Consensus 592 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----l~~-l-~~l~~L~~L~l~~c 662 (769)
+|++|++++|. +... +...+. ..+....+++|+.|++++|. ++. ++. + ..+++|++|++++|
T Consensus 245 ~L~~L~L~~n~-i~~~--~~~~l~-----~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 245 NLRELGLNDCL-LSAR--GAAAVV-----DAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp TCCEEECTTCC-CCHH--HHHHHH-----HHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred CcCEEECCCCC-Cchh--hHHHHH-----HHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 77888887764 2211 000000 00000125677777777763 333 322 2 34677777777654
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=4.7e-13 Score=122.75 Aligned_cols=124 Identities=27% Similarity=0.267 Sum_probs=93.4
Q ss_pred eeEEEEeecccccc--cccC-CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEe
Q 046742 392 QVIRRMSLMENQVQ--SLSK-IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLN 468 (769)
Q Consensus 392 ~~l~~L~l~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 468 (769)
++++.|++++|.+. .+|. +..+++|++|++++|.++.+ ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 46788888888877 5665 47788888888888888777 3377888888888888843333777777788888888
Q ss_pred ccCCCCcccc--hhhhcCCCCcEEecCCCcCcCccCc---ccccCCcccceeeee
Q 046742 469 LSLTNIKELP--EELKALVNLKCLNLDYTKSLCRIPR---HLISNFSMLYILRIV 518 (769)
Q Consensus 469 l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~~p~---~~i~~L~~L~~L~l~ 518 (769)
+++|.++.+| ..++.+++|++|++++|. +..+|. ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 8888888765 668888888888888886 566665 447777888887765
No 122
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.37 E-value=6.4e-12 Score=135.22 Aligned_cols=284 Identities=15% Similarity=0.085 Sum_probs=167.3
Q ss_pred CCCCCchHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHhhccCCC---CCCcEEEEEEeCccccHHHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGE----EHVGIIGLYGMGEVGKTTLLTRINNKFSNTP---NGFDFVIWVVLSRDLQIDRLQEN 128 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~ 128 (769)
+.++||+++++++.+++.. ...+.+.|+|++|+||||+|+.+++...... +.-...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 6789999999999998843 4566889999999999999999998762100 11234678888888888899999
Q ss_pred HHHHhCCCCcccccccHHHHHHHHHHHHc--cCCEEEEEecccCccc-------ccccCCCCCCC--CCCcEEEEeeccC
Q 046742 129 IARKIGLYDQSWKNKRLEIKAADIFKILS--RKKFVLLLDDIWNRVD-------LEKLGIPPMNT--NGSSKIVFTTRSA 197 (769)
Q Consensus 129 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~-------~~~~~~~~~~~--~~~~~iivTtR~~ 197 (769)
++.+++...+. ...+.......+.+.+. +++.+|||||++.... +..+....... ..+..+|.||+..
T Consensus 99 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 99 IAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 99999764321 33445566666777764 4588999999975421 11111111110 3456778888766
Q ss_pred Ccccccc-----c-c-ceEEcCCCCHHHHHHHHHhhhCC--CccCCCCCHHHHHHHHHHHcC---CchhHH-HHHHHHh-
Q 046742 198 GGCGLME-----A-H-RIFKVKCLEHKEAWELFQMKVGR--ETLESHLQIPELAEIVAKECD---GLPLAL-ITIGRAM- 263 (769)
Q Consensus 198 ~v~~~~~-----~-~-~~~~l~~l~~~~a~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~~~---g~Plai-~~~~~~l- 263 (769)
.....+. . . ..+.+++++.++..+++...+.. .....+ .+..+.+++.++ |.|..+ ..+....
T Consensus 178 ~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp TTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4322111 1 1 47899999999999999887532 111112 345677888887 999433 3322221
Q ss_pred -c---C--CCChhHHHHHHHHHHhcc--cCCCChhhhhhHHhh-hc-CCCCCCccchhHHHHHHh----hcCccccc--h
Q 046742 264 -A---F--KKTPQEWKDAIQVLRRSA--SEFPGMDEIKSCFLY-CC-LFPEDCDISKIDLIDCWI----GEGFFDEY--D 327 (769)
Q Consensus 264 -~---~--~~~~~~w~~~l~~l~~~~--~~~~~~~~~k~cfl~-~s-~fp~~~~i~~~~li~~w~----a~g~~~~~--~ 327 (769)
. . .-+.+.++.+++...... ..+.+++.....++. .+ ++.....+....+.+... ..| .... .
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 333 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LEHVTLR 333 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCCCCHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCCCCHH
Confidence 1 1 135666777666543321 111112222233332 22 222222344443333221 123 1121 2
Q ss_pred hHhHHHHHHHHhhcccc
Q 046742 328 RGYTIIGDLLRACLLEE 344 (769)
Q Consensus 328 ~~~~~~~~L~~~sll~~ 344 (769)
....+++.|...+++..
T Consensus 334 ~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 334 RVSGIISELDMLGIVKS 350 (387)
T ss_dssp HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCeEE
Confidence 56678888889988876
No 123
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=9.5e-12 Score=133.71 Aligned_cols=219 Identities=14% Similarity=-0.006 Sum_probs=144.9
Q ss_pred CCCCCchHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHhhccCC----CCC-CcEEEEEEeCccc-cHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGE----EHVGIIGLYGMGEVGKTTLLTRINNKFSNT----PNG-FDFVIWVVLSRDL-QIDRL 125 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----~~~-f~~~~wv~~~~~~-~~~~~ 125 (769)
..++||+++++++.+++.. ...+.+.|+|++|+|||++|+.+++..... .+. ....+|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 7799999999999887743 446689999999999999999999875110 011 3457888887766 78888
Q ss_pred HHHHHHHh-CCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc-------ccccCCCCCCCCCCcEEEEeeccC
Q 046742 126 QENIARKI-GLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD-------LEKLGIPPMNTNGSSKIVFTTRSA 197 (769)
Q Consensus 126 ~~~i~~~l-~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------~~~~~~~~~~~~~~~~iivTtR~~ 197 (769)
+..++.++ +... .....+.......+.+.+..++.+|||||++.... +..+.... .+..+|+||+..
T Consensus 100 ~~~l~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~ 174 (384)
T 2qby_B 100 LSSLAGKLTGFSV-PKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHCSCC-CSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSST
T ss_pred HHHHHHHhcCCCC-CCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCC
Confidence 88888887 3221 11233445667777888877777999999976421 22221111 577889998876
Q ss_pred Cccccc------cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcC---Cchh-HHHHHHHH--hc-
Q 046742 198 GGCGLM------EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECD---GLPL-ALITIGRA--MA- 264 (769)
Q Consensus 198 ~v~~~~------~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pl-ai~~~~~~--l~- 264 (769)
.....+ .-...+++++++.++..+++...+...- ....-..+..+.+++.++ |.|. ++..+-.. +.
T Consensus 175 ~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 175 NVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGL-IKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTS-CTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred chHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhc-ccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 431111 1123899999999999999998753100 001112466778888888 8887 44433322 22
Q ss_pred --CCCChhHHHHHHHHHH
Q 046742 265 --FKKTPQEWKDAIQVLR 280 (769)
Q Consensus 265 --~~~~~~~w~~~l~~l~ 280 (769)
..-+.+.+..+++...
T Consensus 254 ~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp SSSCCCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHh
Confidence 1246677777766553
No 124
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=2.6e-12 Score=138.25 Aligned_cols=222 Identities=14% Similarity=0.072 Sum_probs=140.0
Q ss_pred CCCCCchHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGE----EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIAR 131 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 131 (769)
..++||+++++++.+++.. ...+.+.|+|++|+||||||+.+++......+.-...+|+++....+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999998863 456789999999999999999999876211110235678887776677788888888
Q ss_pred HhCCCCcccccccHHHHHHHHHHHHc--cCCEEEEEecccCcc------cccccCCCCCC-CCCCcEEEEeeccCCcccc
Q 046742 132 KIGLYDQSWKNKRLEIKAADIFKILS--RKKFVLLLDDIWNRV------DLEKLGIPPMN-TNGSSKIVFTTRSAGGCGL 202 (769)
Q Consensus 132 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~~~~~~-~~~~~~iivTtR~~~v~~~ 202 (769)
+++..... ...+.......+.+.+. +++.+||||+++... .+..+...+.. ...+..+|+||+.......
T Consensus 100 ~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 100 SLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 77653321 22345555666666665 348999999997532 12122111100 2335667888876643222
Q ss_pred cc-------ccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcC---CchhHHHHHHH-Hh--c---C-
Q 046742 203 ME-------AHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECD---GLPLALITIGR-AM--A---F- 265 (769)
Q Consensus 203 ~~-------~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plai~~~~~-~l--~---~- 265 (769)
+. ....+++++++.++..+++.+.+.... ....-..+..+.+++.++ |.|..+..+.. .. . .
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~ 257 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKD 257 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Confidence 21 114799999999999999988653111 011223567778888887 99984433322 21 1 1
Q ss_pred -CCChhHHHHHHHHH
Q 046742 266 -KKTPQEWKDAIQVL 279 (769)
Q Consensus 266 -~~~~~~w~~~l~~l 279 (769)
.-+.+..+.+++..
T Consensus 258 ~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 258 TKVKEEYVYMAKEEI 272 (386)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHH
Confidence 13556666655544
No 125
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.34 E-value=4.4e-11 Score=128.75 Aligned_cols=286 Identities=13% Similarity=0.062 Sum_probs=168.1
Q ss_pred CCCCCchHHHHHHHHHhcc----CCcc--EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGE----EHVG--IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENI 129 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~----~~~~--vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 129 (769)
+.++||+++++++.+++.. .... .+.|+|++|+||||+|+.+++... ... -..++|+++....+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~-~~~-~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK-DKT-TARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT-TSC-CCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh-hhc-CeeEEEEeCccCCCHHHHHHHH
Confidence 6799999999999998864 3334 899999999999999999999872 111 1356788888877888999999
Q ss_pred HHHhCCCCcccccccHHHHHHHHHHHHc--cCCEEEEEecccCcc--cccccCCCCCC-CC---CCcEEEEeeccCCccc
Q 046742 130 ARKIGLYDQSWKNKRLEIKAADIFKILS--RKKFVLLLDDIWNRV--DLEKLGIPPMN-TN---GSSKIVFTTRSAGGCG 201 (769)
Q Consensus 130 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--~~~~~~~~~~~-~~---~~~~iivTtR~~~v~~ 201 (769)
+..++...+. ...+.......+.+.+. +++.+|||||++... .+..+...+.. .. .+..||++|+..+...
T Consensus 95 ~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 95 ARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 9988754321 23345555666666554 568899999997642 22222111111 11 3667888887653322
Q ss_pred ccc-------ccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHc---------CCchhHHHHHHHHh--
Q 046742 202 LME-------AHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKEC---------DGLPLALITIGRAM-- 263 (769)
Q Consensus 202 ~~~-------~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plai~~~~~~l-- 263 (769)
... ....+.+++++.++..+++...+.... ....-..+..+.+++.+ +|.|..+..+....
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 211 113699999999999999988764211 01122257788899999 78875544433221
Q ss_pred -c---CC--CChhHHHHHHHHHHhccc--CCCChhh-hhhHHhhhcCCC---CCCccchhHHHHHHhh----cCccc-cc
Q 046742 264 -A---FK--KTPQEWKDAIQVLRRSAS--EFPGMDE-IKSCFLYCCLFP---EDCDISKIDLIDCWIG----EGFFD-EY 326 (769)
Q Consensus 264 -~---~~--~~~~~w~~~l~~l~~~~~--~~~~~~~-~k~cfl~~s~fp---~~~~i~~~~li~~w~a----~g~~~-~~ 326 (769)
. .. -+.+....+.+....... .+..+.. .+..+..++.+. .+..+....+...+.. .|... ..
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 332 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVH 332 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCH
Confidence 1 11 233333333333211100 0000111 333333333332 2213444455444322 23211 11
Q ss_pred hhHhHHHHHHHHhhccccc
Q 046742 327 DRGYTIIGDLLRACLLEEV 345 (769)
Q Consensus 327 ~~~~~~~~~L~~~sll~~~ 345 (769)
.....++..|.+.+++...
T Consensus 333 ~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 333 SQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHhCCCeEEe
Confidence 2566788999999999763
No 126
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.33 E-value=1.7e-12 Score=134.93 Aligned_cols=134 Identities=18% Similarity=0.118 Sum_probs=67.5
Q ss_pred CcceeEEEEeecccccccc-c-----CCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcc--cc--ccc
Q 046742 389 GKWQVIRRMSLMENQVQSL-S-----KIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQ--LP--SGI 458 (769)
Q Consensus 389 ~~~~~l~~L~l~~~~~~~~-~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~--lp--~~i 458 (769)
..+++|+.|++++|.+... + .+..+++|++|++++|.+..+++..|+.+++|++|+|++|...+. ++ ..+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 3445556666665555431 1 123455566666666655555555555566666666666532221 22 122
Q ss_pred cCCcCCCEEeccCCCCcccchh----hhcCCCCcEEecCCCcCcCccCcccccCC---cccceeeeeccccc
Q 046742 459 SRLVSLQHLNLSLTNIKELPEE----LKALVNLKCLNLDYTKSLCRIPRHLISNF---SMLYILRIVDCHYF 523 (769)
Q Consensus 459 ~~l~~L~~L~l~~~~l~~lp~~----~~~l~~L~~L~l~~~~~l~~~p~~~i~~L---~~L~~L~l~~~~~~ 523 (769)
+.+++|++|++++|+++.+|.. ++.+++|++|++++|......|.. +..+ ++|++|++++|.+.
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCCCCTTCCCEECCSSCCC
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhccCcCcCCEEECCCCCCC
Confidence 4555566666666655544432 345556666666665532222433 3333 45666666555543
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=5.9e-12 Score=120.72 Aligned_cols=129 Identities=22% Similarity=0.270 Sum_probs=108.1
Q ss_pred EEEeecccccccccCCCCCCCccEEEccCCCCcccchh-hhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCCC
Q 046742 395 RRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDG-FFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTN 473 (769)
Q Consensus 395 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~ 473 (769)
+.++++++.++.+|... ..+|++|++++|.++.+++. .|..+++|++|+|++|...+..|..+..+.+|++|++++|+
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 57889999998887622 23899999999999988864 58999999999999995444457889999999999999999
Q ss_pred Ccccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccc
Q 046742 474 IKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEE 525 (769)
Q Consensus 474 l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~ 525 (769)
++.+|.. ++.+++|++|++++|. +..+++..+..+++|++|++++|.+...
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 9987765 8899999999999997 5655444589999999999999876543
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=3.8e-12 Score=120.28 Aligned_cols=146 Identities=17% Similarity=0.218 Sum_probs=116.3
Q ss_pred cccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCCCCcccchhh
Q 046742 402 NQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNIKELPEEL 481 (769)
Q Consensus 402 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~~ 481 (769)
+.+...+.+.++.+|++|++++|.++.++. +....++|++|++++| .++.+ ..+..+++|++|++++|.++.+|..+
T Consensus 7 ~~i~~~~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 7 ELIEQAAQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp HHHHTSCEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred HHHHHHHhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 344445567789999999999999998854 3343449999999999 66666 57899999999999999999998775
Q ss_pred -hcCCCCcEEecCCCcCcCccCc-ccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEeccchh
Q 046742 482 -KALVNLKCLNLDYTKSLCRIPR-HLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTSSHA 554 (769)
Q Consensus 482 -~~l~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 554 (769)
+.+++|++|++++|. +..+|. ..+..+++|++|++++|.+..... .....+..+++|+.|+++.+....
T Consensus 84 ~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~---~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 84 DQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKH---YRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTT---HHHHHHHHCTTCSEETTEECCHHH
T ss_pred hhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHh---HHHHHHHHCCccceeCCCcCCHHH
Confidence 999999999999997 678886 238899999999999998754322 112346788999999988766543
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=1.3e-11 Score=116.64 Aligned_cols=130 Identities=23% Similarity=0.325 Sum_probs=111.1
Q ss_pred EEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccc-cccCCcCCCEEeccCC
Q 046742 394 IRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPS-GISRLVSLQHLNLSLT 472 (769)
Q Consensus 394 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~ 472 (769)
.+.+++.++.+..+|. .-.++|++|++++|.++.+++..|..+++|++|++++| .++.+|. .+..+.+|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC
Confidence 3567788888887774 23479999999999999999888899999999999999 6667665 4789999999999999
Q ss_pred CCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeecccccccc
Q 046742 473 NIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEV 526 (769)
Q Consensus 473 ~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 526 (769)
+++.+|.. ++.+++|++|++++|. +..+|...+..+++|++|++++|.+....
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 99988876 6899999999999996 67888876788999999999998876543
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=1.2e-11 Score=118.49 Aligned_cols=125 Identities=21% Similarity=0.327 Sum_probs=106.8
Q ss_pred EEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcccc-ccccCCcCCCEEeccCCC
Q 046742 395 RRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLP-SGISRLVSLQHLNLSLTN 473 (769)
Q Consensus 395 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~ 473 (769)
+.++++++.++.+|.. -.++|++|++++|.++.+|. .|..+++|++|+|++| .++.++ ..|..+.+|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 4678888888888763 23689999999999998885 4899999999999999 555554 569999999999999999
Q ss_pred Ccccch-hhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccc
Q 046742 474 IKELPE-ELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYF 523 (769)
Q Consensus 474 l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 523 (769)
++.+|. .++.+++|++|++++|. +..+|...+..+++|+.|++.+|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 998876 48999999999999997 78888877889999999999988754
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.30 E-value=2e-12 Score=137.58 Aligned_cols=271 Identities=15% Similarity=0.106 Sum_probs=163.8
Q ss_pred EEEccCCCCcccchhhhcCCCcceEEEecCCCCCcccc-----ccccCCc-CCCEEeccCCCCccc-chhhhcC-----C
Q 046742 418 TLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLP-----SGISRLV-SLQHLNLSLTNIKEL-PEELKAL-----V 485 (769)
Q Consensus 418 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-----~~i~~l~-~L~~L~l~~~~l~~l-p~~~~~l-----~ 485 (769)
.+.+++|.++...+.++...++|++|+|++| .++..+ ..+..++ +|++|++++|.++.. +..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4678889888887887777777999999999 566554 5677888 899999999999865 4556664 9
Q ss_pred CCcEEecCCCcCcCccCccc----ccCC-cccceeeeeccccccccchhhhHHHHhhcC-cCCcEEEEEeccchhhhhhh
Q 046742 486 NLKCLNLDYTKSLCRIPRHL----ISNF-SMLYILRIVDCHYFEEVENCEVLMEEVLLM-ENLNVLGINLTSSHALSKFL 559 (769)
Q Consensus 486 ~L~~L~l~~~~~l~~~p~~~----i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~ 559 (769)
+|++|++++|. +...+... +..+ ++|++|++++|.+..... ......+..+ ++|+.|+++.+.......
T Consensus 81 ~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-- 155 (362)
T 3goz_A 81 NVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS--SEFKQAFSNLPASITSLNLRGNDLGIKSS-- 155 (362)
T ss_dssp TCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH--HHHHHHHTTSCTTCCEEECTTSCGGGSCH--
T ss_pred CccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH--HHHHHHHHhCCCceeEEEccCCcCCHHHH--
Confidence 99999999997 55444332 3344 899999999998644322 1122334443 578888877554331100
Q ss_pred cccccccccceeeecccCCCccccccCccccc-CCCeEEEeccCCcceEEeccccccccccccccCcccc-ccccEEEEe
Q 046742 560 SSHRIQSYILHLRLELLEDSRSLNVLPLANIK-NLESLGFRNCEKLEELKIEIGNIQQNVCVSQVHGFQF-HSLYYVVVS 637 (769)
Q Consensus 560 ~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~ 637 (769)
..+. ..+..++ +|++|++++|. +......... . .-..+ ++|+.|+++
T Consensus 156 --------------------~~l~-~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~--~-------~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 156 --------------------DELI-QILAAIPANVNSLNLRGNN-LASKNCAELA--K-------FLASIPASVTSLDLS 204 (362)
T ss_dssp --------------------HHHH-HHHHTSCTTCCEEECTTSC-GGGSCHHHHH--H-------HHHTSCTTCCEEECT
T ss_pred --------------------HHHH-HHHhcCCccccEeeecCCC-CchhhHHHHH--H-------HHHhCCCCCCEEECC
Confidence 0000 0022333 89999998874 3321111000 0 00123 589999999
Q ss_pred cCcCCcc-----cc-cccc-cCCccEEEEeecCcchhhcccccCCccccccCCccccccceecccccccccccCCCCCCC
Q 046742 638 DCNKLRN-----LS-WLGL-APNLLTIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLELLILETLPKLKSIYPNALPF 710 (769)
Q Consensus 638 ~c~~l~~-----l~-~l~~-l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~ 710 (769)
+|. ++. ++ .+.. .++|++|+++++. +...+.. .....+..+++|+.|++++|. +..+.....
T Consensus 205 ~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~------~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~-- 273 (362)
T 3goz_A 205 ANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLE------NLKLLKDSLKHLQTVYLDYDI-VKNMSKEQC-- 273 (362)
T ss_dssp TSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHH------HHHHTTTTTTTCSEEEEEHHH-HTTCCHHHH--
T ss_pred CCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHH------HHHHHHhcCCCccEEEeccCC-ccccCHHHH--
Confidence 884 544 22 2333 4599999998863 3332110 000234667889999999864 222221000
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCCCc
Q 046742 711 LHLKEIKVSNCPELKKLPLDSNSAKGH 737 (769)
Q Consensus 711 ~~L~~L~i~~c~~L~~L~l~~n~~~~~ 737 (769)
..+. -.+.++++|+.|++++|.+...
T Consensus 274 ~~l~-~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 274 KALG-AAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHH-TTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHH-HHhccCCceEEEecCCCcCCCc
Confidence 0000 0123556677777777776544
No 132
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.29 E-value=8.2e-12 Score=139.39 Aligned_cols=134 Identities=23% Similarity=0.332 Sum_probs=88.1
Q ss_pred eEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCC
Q 046742 393 VIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLT 472 (769)
Q Consensus 393 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 472 (769)
+++.|++.+|.++.+|... +++|++|++++|.++.+| ..+++|++|++++| .++.+|. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence 4667777777777666522 367777777777777666 23567777777777 5555776 554 7777777777
Q ss_pred CCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEeccc
Q 046742 473 NIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTSS 552 (769)
Q Consensus 473 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 552 (769)
+++.+|. .+++|+.|++++|. +..+|. .+++|++|++++|.+.. ++. +. ++|+.|+++.+..
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~L~~-lp~-------l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNNQLTF-LPE-------LP--ESLEALDVSTNLL 192 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSC-CCC-------CC--TTCCEEECCSSCC
T ss_pred cCCCCCC---cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCCCCCC-cch-------hh--CCCCEEECcCCCC
Confidence 7777776 56777777777775 555665 45677777777776544 331 11 5666666665544
Q ss_pred h
Q 046742 553 H 553 (769)
Q Consensus 553 ~ 553 (769)
.
T Consensus 193 ~ 193 (571)
T 3cvr_A 193 E 193 (571)
T ss_dssp S
T ss_pred C
Confidence 3
No 133
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.28 E-value=2.2e-11 Score=121.81 Aligned_cols=196 Identities=13% Similarity=0.138 Sum_probs=114.5
Q ss_pred CCCCCchHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhC
Q 046742 56 PQTLGLESTFDEVWRCLGEEH-VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIG 134 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 134 (769)
..++||+.+++.+..++.... .+.+.|+|++|+||||+|+.+++... ....+.. ..+..... ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~-~~~~~~~---~~~~~~~~----~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITA---TPCGVCDN----CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH-CTTCSCS---SCCSCSHH----HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCC---CCCcccHH----HHHHhccCC
Confidence 568999999999999997643 45889999999999999999998762 1111100 00000000 000100000
Q ss_pred CCC---cccccccHHHHHHHHHHHH-----ccCCEEEEEecccCc--ccccccCCCCCCCCCCcEEEEeeccCCccc--c
Q 046742 135 LYD---QSWKNKRLEIKAADIFKIL-----SRKKFVLLLDDIWNR--VDLEKLGIPPMNTNGSSKIVFTTRSAGGCG--L 202 (769)
Q Consensus 135 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~iivTtR~~~v~~--~ 202 (769)
... ........+. ...+.+.+ .+++.+||+||++.. ..+..+...+.....+..+|+||+...... .
T Consensus 95 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 95 VDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp SSEEEEETTCGGGHHH-HHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHH
T ss_pred cceEEecCcccccHHH-HHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHH
Confidence 000 0000011111 11222221 346799999999763 223333222222345678888887653211 1
Q ss_pred ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHHHh
Q 046742 203 MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGRAM 263 (769)
Q Consensus 203 ~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 263 (769)
......+++++++.++..+++...+..... .-..+..+.|++.++|.|..+..+...+
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 122357999999999999999887753321 1125678899999999999888776543
No 134
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.27 E-value=1.2e-11 Score=131.57 Aligned_cols=154 Identities=18% Similarity=0.191 Sum_probs=123.6
Q ss_pred EEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhc-CCCcceEEEecCCCCCcccc-ccccCCcCCCEEeccCC
Q 046742 395 RRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQ-FMPSLKVLNLSNNQSLKQLP-SGISRLVSLQHLNLSLT 472 (769)
Q Consensus 395 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~ 472 (769)
+.+++.++.++.+|.. -...++.|++++|.++.+++..|. .+++|++|+|++| .+..+| ..+.++.+|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC
Confidence 5788888998888762 235689999999999999988787 8999999999999 566665 56999999999999999
Q ss_pred CCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEecc
Q 046742 473 NIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINLTS 551 (769)
Q Consensus 473 ~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 551 (769)
+++.+|.. +..+++|+.|++++|. +..++...+.++++|++|++++|.+....... ...+..+++|+.|+++.+.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~---~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL---IKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGG---TC----CTTCCEEECCSSC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHH---hcCcccCCcCCEEECCCCC
Confidence 99988764 8999999999999997 67776666999999999999999876543211 1122567889988888665
Q ss_pred chh
Q 046742 552 SHA 554 (769)
Q Consensus 552 ~~~ 554 (769)
...
T Consensus 175 l~~ 177 (361)
T 2xot_A 175 LKK 177 (361)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.25 E-value=3.8e-11 Score=112.39 Aligned_cols=128 Identities=24% Similarity=0.301 Sum_probs=108.3
Q ss_pred EEecCCccc--cCCCC-CcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCC
Q 046742 375 FVQAGARLT--EAPET-GKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSL 451 (769)
Q Consensus 375 ~~~~~~~~~--~~~~~-~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 451 (769)
+...+..+. .++.. ..+++|+.|++.+|.+..++.+..+++|++|++++|.++...+..+..+++|++|++++| .+
T Consensus 29 L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l 107 (168)
T 2ell_A 29 LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KL 107 (168)
T ss_dssp EECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SC
T ss_pred EECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-cc
Confidence 333444454 45544 778899999999999998877899999999999999999855666788999999999999 77
Q ss_pred cccc--ccccCCcCCCEEeccCCCCcccch----hhhcCCCCcEEecCCCcCcCccCcc
Q 046742 452 KQLP--SGISRLVSLQHLNLSLTNIKELPE----ELKALVNLKCLNLDYTKSLCRIPRH 504 (769)
Q Consensus 452 ~~lp--~~i~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~~~~l~~~p~~ 504 (769)
+.+| ..+..+++|++|++++|.++.+|. .+..+++|++|++++|. ...+|..
T Consensus 108 ~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 108 KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 7776 689999999999999999999887 78999999999999996 5666653
No 136
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.24 E-value=4e-11 Score=118.05 Aligned_cols=184 Identities=13% Similarity=0.055 Sum_probs=114.3
Q ss_pred CCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCC
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGL 135 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 135 (769)
..++||++.++++.+++.....+.+.|+|++|+|||++|+.+++... ....-...+.+..+.......+...+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHHHHHhcc
Confidence 56899999999999999876655699999999999999999998751 11111123444444333333222222211111
Q ss_pred CCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeeccCCcc-c-cccccceEEc
Q 046742 136 YDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTRSAGGC-G-LMEAHRIFKV 211 (769)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR~~~v~-~-~~~~~~~~~l 211 (769)
.. .-.+++.+||+||++... ..+.+...+.....+.++|+||+..... . .......+++
T Consensus 96 ~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 96 AP-----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp CC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred cC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeec
Confidence 00 012568899999997642 2222221122223467888888765321 1 1122347899
Q ss_pred CCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHH
Q 046742 212 KCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIG 260 (769)
Q Consensus 212 ~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 260 (769)
.+++.++..+++.+.+...... -..+..+.+++.++|.|..+..+.
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999998876432211 125677889999999998654443
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=1.4e-11 Score=142.81 Aligned_cols=114 Identities=25% Similarity=0.274 Sum_probs=90.7
Q ss_pred CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCCCCcccchhhhcCCCCcE
Q 046742 410 IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNIKELPEELKALVNLKC 489 (769)
Q Consensus 410 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~ 489 (769)
+..+..|++|+|++|.+..++...+ .+++|++|+|++| .+..+|..|++|.+|++|+|++|.|+.+|..+++|++|++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred hccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 5677888888888888888877644 6888888888888 5668888888888888888888888888888888888888
Q ss_pred EecCCCcCcCccCcccccCCcccceeeeeccccccccc
Q 046742 490 LNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVE 527 (769)
Q Consensus 490 L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 527 (769)
|+|++|. ++.+|.. +++|++|++|++++|.+...++
T Consensus 298 L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 298 FYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp EECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCCSHHH
T ss_pred EECCCCC-CCccChh-hhcCCCccEEeCCCCccCCCCh
Confidence 8888885 6788877 8888888888888887765544
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.22 E-value=5.3e-12 Score=141.67 Aligned_cols=138 Identities=20% Similarity=0.260 Sum_probs=100.4
Q ss_pred EEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCCCCc
Q 046742 396 RMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNIK 475 (769)
Q Consensus 396 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~ 475 (769)
.+.+.+|.+..++. ..|++|++++|.++.+|. ++.+++|++|+|++| .++.+|..++.+++|++|++++|.++
T Consensus 427 ~l~l~~n~i~~l~~----~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 427 SKFLLENSVLKMEY----ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp HHHHHHHHHHHHHH----TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhhhcccccccCc----cCceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCC
Confidence 33344455544432 248888888888888775 788888888888888 66688888888888888888888888
Q ss_pred ccchhhhcCCCCcEEecCCCcCcCcc--CcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEE
Q 046742 476 ELPEELKALVNLKCLNLDYTKSLCRI--PRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLG 546 (769)
Q Consensus 476 ~lp~~~~~l~~L~~L~l~~~~~l~~~--p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 546 (769)
.+| .++.+++|+.|++++|. +..+ |.. ++.+++|+.|++++|.+...++... .-...+++|+.|+
T Consensus 500 ~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~~~~---~l~~~lp~L~~L~ 566 (567)
T 1dce_A 500 NVD-GVANLPRLQELLLCNNR-LQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEGIQE---RLAEMLPSVSSIL 566 (567)
T ss_dssp CCG-GGTTCSSCCEEECCSSC-CCSSSTTGG-GGGCTTCCEEECTTSGGGGSSSCTT---HHHHHCTTCSEEE
T ss_pred CCc-ccCCCCCCcEEECCCCC-CCCCCCcHH-HhcCCCCCEEEecCCcCCCCccHHH---HHHHHCcccCccC
Confidence 888 78888888888888886 5555 555 8888888888888887655443221 1233466666664
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=2.3e-11 Score=136.52 Aligned_cols=121 Identities=22% Similarity=0.304 Sum_probs=107.3
Q ss_pred eEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCC
Q 046742 393 VIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLT 472 (769)
Q Consensus 393 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 472 (769)
.++.|++++|.++.+|.+..+++|++|++++|.++.+|.. ++.+++|++|+|++| .++.+| .++++++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 4788999999999999999999999999999999998875 899999999999999 677788 8999999999999999
Q ss_pred CCccc--chhhhcCCCCcEEecCCCcCcCccCcc---cccCCcccceeee
Q 046742 473 NIKEL--PEELKALVNLKCLNLDYTKSLCRIPRH---LISNFSMLYILRI 517 (769)
Q Consensus 473 ~l~~l--p~~~~~l~~L~~L~l~~~~~l~~~p~~---~i~~L~~L~~L~l 517 (769)
+++.+ |..++.+++|+.|++++|+ +..+|+. .+..+++|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 99988 8999999999999999997 5666553 2344788888864
No 140
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=2.9e-11 Score=110.66 Aligned_cols=130 Identities=19% Similarity=0.230 Sum_probs=105.1
Q ss_pred CCCCCccEEEccCCCCc--ccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCCCCcc-cchhhhcCCCC
Q 046742 411 PSCPSLITLFLNNNNLK--VITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNIKE-LPEELKALVNL 487 (769)
Q Consensus 411 ~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L 487 (769)
...++|+.|++++|.++ .++. .+..+++|++|++++| .+..+ ..++.+++|++|++++|.++. +|..++.+++|
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CCCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 34578999999999998 6665 4789999999999999 66666 678999999999999999997 88888889999
Q ss_pred cEEecCCCcCcCccCc-ccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEE
Q 046742 488 KCLNLDYTKSLCRIPR-HLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGI 547 (769)
Q Consensus 488 ~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 547 (769)
++|++++|. +..+|. ..++.+++|++|++++|.+....+ .....+..+++|+.|++
T Consensus 91 ~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 91 THLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLND---YRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTT---HHHHHHHHCTTCCEETT
T ss_pred CEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHH---HHHHHHHHCCCcccccC
Confidence 999999997 666541 338999999999999987654322 11234667788877754
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.17 E-value=6.3e-13 Score=128.34 Aligned_cols=132 Identities=23% Similarity=0.304 Sum_probs=107.7
Q ss_pred CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEeccCCCCcccchhhhcCCCCcE
Q 046742 410 IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLTNIKELPEELKALVNLKC 489 (769)
Q Consensus 410 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~ 489 (769)
+..+++|++|++++|.++.++ .+..+++|++|++++| .+..+|..+..+++|++|++++|+++.+| .++.+++|++
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSE
T ss_pred HhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCE
Confidence 677889999999999998887 4888999999999999 67788988888899999999999999987 6889999999
Q ss_pred EecCCCcCcCccCc-ccccCCcccceeeeeccccccccch----hhhHHHHhhcCcCCcEEE
Q 046742 490 LNLDYTKSLCRIPR-HLISNFSMLYILRIVDCHYFEEVEN----CEVLMEEVLLMENLNVLG 546 (769)
Q Consensus 490 L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~----~~~~~~~l~~l~~L~~L~ 546 (769)
|++++|. +..+|. ..+..+++|++|++++|.+....+. .......+..+++|+.|+
T Consensus 120 L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 120 LYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999997 566554 3388999999999999876554432 222334467788888776
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.16 E-value=1.1e-10 Score=111.83 Aligned_cols=121 Identities=25% Similarity=0.293 Sum_probs=103.6
Q ss_pred EEecCCccccCCCCCcceeEEEEeecccccccccC-CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcc
Q 046742 375 FVQAGARLTEAPETGKWQVIRRMSLMENQVQSLSK-IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQ 453 (769)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 453 (769)
+...+..+..+|.. -..+++.|++.+|.++.+|. +.++++|++|++++|.++.+++..|..+++|++|+|++| .+..
T Consensus 15 l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~ 92 (193)
T 2wfh_A 15 VRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRC 92 (193)
T ss_dssp EECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCB
T ss_pred EEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCE
Confidence 44555566666642 23589999999999998864 788999999999999999999888999999999999999 5555
Q ss_pred cc-ccccCCcCCCEEeccCCCCcccchh-hhcCCCCcEEecCCCcC
Q 046742 454 LP-SGISRLVSLQHLNLSLTNIKELPEE-LKALVNLKCLNLDYTKS 497 (769)
Q Consensus 454 lp-~~i~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~ 497 (769)
+| ..+..+++|++|++++|.++.+|.. +..+++|+.|++++|+.
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 54 5799999999999999999999885 88999999999999973
No 143
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.16 E-value=9.9e-11 Score=130.65 Aligned_cols=157 Identities=20% Similarity=0.201 Sum_probs=91.8
Q ss_pred cCCccccCCCCCcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcccccc
Q 046742 378 AGARLTEAPETGKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSG 457 (769)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~ 457 (769)
.+..+..+|... .+++++|++++|.++.+| ..+++|++|++++|.++.+|. +.. +|++|+|++| .++.+|.
T Consensus 67 s~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N-~l~~lp~- 137 (571)
T 3cvr_A 67 NRLNLSSLPDNL-PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNN-QLTMLPE- 137 (571)
T ss_dssp CSSCCSCCCSCC-CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSS-CCSCCCC-
T ss_pred CCCCCCccCHhH-cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCC-cCCCCCC-
Confidence 333444444321 256777777777777666 456777777777777776665 333 6777777777 4555665
Q ss_pred ccCCcCCCEEeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHh-
Q 046742 458 ISRLVSLQHLNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEV- 536 (769)
Q Consensus 458 i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l- 536 (769)
.+++|++|++++|.++.+|. .+++|++|++++|. +..+|. +. ++|+.|++++|.+. .++.. . ..+
T Consensus 138 --~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~-~lp~~-~--~~L~ 203 (571)
T 3cvr_A 138 --LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLE-SLPAV-P--VRNH 203 (571)
T ss_dssp --CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCS-SCCCC-C------
T ss_pred --cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCC-chhhH-H--Hhhh
Confidence 56677777777777777765 46677777777775 555665 33 67777777766654 22210 0 011
Q ss_pred hcCcCCcEEEEEeccchhhhh
Q 046742 537 LLMENLNVLGINLTSSHALSK 557 (769)
Q Consensus 537 ~~l~~L~~L~l~~~~~~~~~~ 557 (769)
...+.|+.|+++.+....++.
T Consensus 204 ~~~~~L~~L~Ls~N~l~~lp~ 224 (571)
T 3cvr_A 204 HSEETEIFFRCRENRITHIPE 224 (571)
T ss_dssp ----CCEEEECCSSCCCCCCG
T ss_pred cccccceEEecCCCcceecCH
Confidence 112223666666665554443
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.15 E-value=1e-10 Score=112.04 Aligned_cols=124 Identities=26% Similarity=0.310 Sum_probs=102.8
Q ss_pred EEecCCccccCCCCCcceeEEEEeecccccccccC---CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCC
Q 046742 375 FVQAGARLTEAPETGKWQVIRRMSLMENQVQSLSK---IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSL 451 (769)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 451 (769)
+...+..+..+|... ..+++.|++.+|.+..++. +..+++|++|++++|.++.+++..|..+++|++|+|++| .+
T Consensus 13 l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l 90 (192)
T 1w8a_A 13 VDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KI 90 (192)
T ss_dssp EECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CC
T ss_pred EEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cC
Confidence 344555666666422 2389999999999988765 678999999999999999998877999999999999999 55
Q ss_pred ccc-cccccCCcCCCEEeccCCCCccc-chhhhcCCCCcEEecCCCcCcCc
Q 046742 452 KQL-PSGISRLVSLQHLNLSLTNIKEL-PEELKALVNLKCLNLDYTKSLCR 500 (769)
Q Consensus 452 ~~l-p~~i~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~ 500 (769)
+.+ |..+..+++|++|++++|+++.+ |..++.+++|++|++++|.....
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 555 55689999999999999999966 66799999999999999975433
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=5.2e-11 Score=137.99 Aligned_cols=151 Identities=21% Similarity=0.211 Sum_probs=97.3
Q ss_pred eeEEEEeecccccccccC-CCCCCCccE-----EEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCC
Q 046742 392 QVIRRMSLMENQVQSLSK-IPSCPSLIT-----LFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQ 465 (769)
Q Consensus 392 ~~l~~L~l~~~~~~~~~~-~~~~~~L~~-----L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 465 (769)
++++.|++..+.+...+. ......|+. +++..|.+. +++..|..+++|++|+|++| .+..+|..+.++.+|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCC
Confidence 468888888887766433 222222222 233334343 44566889999999999999 6779999999999999
Q ss_pred EEeccCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEE
Q 046742 466 HLNLSLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVL 545 (769)
Q Consensus 466 ~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L 545 (769)
+|+|++|.++.+|..+++|++|++|+|++|. +..+|.. +++|++|++|++++|.+. .++ ..+..+++|+.|
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~-~lp------~~~~~l~~L~~L 321 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE-LGSCFQLKYFYFFDNMVT-TLP------WEFGNLCNLQFL 321 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS-GGGGTTCSEEECCSSCCC-CCC------SSTTSCTTCCCE
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh-hcCCCCCCEEECCCCCCC-ccC------hhhhcCCCccEE
Confidence 9999999999999999999999999999997 6789988 899999999999999765 444 347889999999
Q ss_pred EEEeccch
Q 046742 546 GINLTSSH 553 (769)
Q Consensus 546 ~l~~~~~~ 553 (769)
+++.+...
T Consensus 322 ~L~~N~l~ 329 (727)
T 4b8c_D 322 GVEGNPLE 329 (727)
T ss_dssp ECTTSCCC
T ss_pred eCCCCccC
Confidence 99887765
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=1.7e-10 Score=108.91 Aligned_cols=123 Identities=28% Similarity=0.439 Sum_probs=102.6
Q ss_pred ecCCccccCCCCCcceeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc
Q 046742 377 QAGARLTEAPETGKWQVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL 454 (769)
Q Consensus 377 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l 454 (769)
..+..+..+|. ...++++.|++.+|.++.++. +..+++|++|++++|.++.+++..|..+++|++|++++| .++.+
T Consensus 14 ~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~ 91 (177)
T 2o6r_A 14 CNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSL 91 (177)
T ss_dssp CCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred ecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-Ccccc
Confidence 34445555553 234689999999999988775 678999999999999999999888899999999999999 56666
Q ss_pred cc-cccCCcCCCEEeccCCCCcccchh-hhcCCCCcEEecCCCcCcCcc
Q 046742 455 PS-GISRLVSLQHLNLSLTNIKELPEE-LKALVNLKCLNLDYTKSLCRI 501 (769)
Q Consensus 455 p~-~i~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~ 501 (769)
|. .+..+++|++|++++|.++.+|.. +..+++|++|++++|+.....
T Consensus 92 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 92 PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 65 478999999999999999999887 578999999999999754333
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.09 E-value=5.3e-10 Score=104.61 Aligned_cols=102 Identities=25% Similarity=0.396 Sum_probs=58.2
Q ss_pred cEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc-cccccCCcCCCEEeccCCCCcccchh-hhcCCCCcEEecCC
Q 046742 417 ITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL-PSGISRLVSLQHLNLSLTNIKELPEE-LKALVNLKCLNLDY 494 (769)
Q Consensus 417 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~ 494 (769)
+++++++|.++.+|... .++|++|+|++| .+..+ |..+..+.+|++|++++|+++.+|.. +..+++|++|++++
T Consensus 12 ~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI---PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC---CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 45555555555555432 245666666666 33333 44556666666666666666665554 35666666666666
Q ss_pred CcCcCccCcccccCCcccceeeeeccccc
Q 046742 495 TKSLCRIPRHLISNFSMLYILRIVDCHYF 523 (769)
Q Consensus 495 ~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 523 (769)
|. +..+|...+..+++|++|++++|.+.
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 64 45555544566666666666665543
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.07 E-value=4.1e-10 Score=105.76 Aligned_cols=101 Identities=25% Similarity=0.376 Sum_probs=54.9
Q ss_pred cEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccc-cccccCCcCCCEEeccCCCCcccchh-hhcCCCCcEEecCC
Q 046742 417 ITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQL-PSGISRLVSLQHLNLSLTNIKELPEE-LKALVNLKCLNLDY 494 (769)
Q Consensus 417 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~ 494 (769)
+.+++++|.++.+|..+ .++|++|+|++| .+..+ |..+.++.+|++|++++|+++.+|.. ++++++|++|++++
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45555555555555432 145555566555 33333 44455556666666666665555554 35566666666665
Q ss_pred CcCcCccCcccccCCcccceeeeecccc
Q 046742 495 TKSLCRIPRHLISNFSMLYILRIVDCHY 522 (769)
Q Consensus 495 ~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 522 (769)
|. +..+|...+..+++|++|++++|.+
T Consensus 91 N~-l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 91 NH-LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred Cc-cceeCHHHhccccCCCEEEeCCCCc
Confidence 54 4555554455566666666665544
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=6.9e-10 Score=104.17 Aligned_cols=105 Identities=22% Similarity=0.335 Sum_probs=91.7
Q ss_pred EEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcccccc-ccCCcCCCEEeccCCC
Q 046742 395 RRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSG-ISRLVSLQHLNLSLTN 473 (769)
Q Consensus 395 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 473 (769)
+.++++++.+..+|.-. .++|++|++++|.++.+++..|..+++|++|+|++| .++.+|.. +.++.+|++|++++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence 57888999998888732 389999999999999998888999999999999999 77778765 6899999999999999
Q ss_pred Ccccchh-hhcCCCCcEEecCCCcCcCccC
Q 046742 474 IKELPEE-LKALVNLKCLNLDYTKSLCRIP 502 (769)
Q Consensus 474 l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p 502 (769)
++.+|.. ++.+++|++|++++|+ +...+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~ 121 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNP-WDCEC 121 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC-BCTTB
T ss_pred cceeCHHHhccccCCCEEEeCCCC-ccccc
Confidence 9999987 8999999999999997 34333
No 150
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.04 E-value=4.8e-10 Score=117.20 Aligned_cols=184 Identities=15% Similarity=0.154 Sum_probs=112.8
Q ss_pred CCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCC-cEEEEEEeCccccHHHHHHHHHHHhC
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGF-DFVIWVVLSRDLQIDRLQENIARKIG 134 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~ 134 (769)
..++||+..++.+.+++..+..+.+.|+|++|+|||++|+.+++... ...+ ...++++.+...+... ++++++.+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~ 97 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL--GRSYADGVLELNASDDRGIDV-VRNQIKHFA 97 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGHHHHEEEECTTSCCSHHH-HHTHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCCEEEecCccccChHH-HHHHHHHHH
Confidence 56899999999999999877655599999999999999999998861 1111 1234444333222221 122222111
Q ss_pred CCCcccccccHHHHHHHHHHHH-ccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeeccCCc-ccc-ccccceE
Q 046742 135 LYDQSWKNKRLEIKAADIFKIL-SRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTRSAGG-CGL-MEAHRIF 209 (769)
Q Consensus 135 ~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR~~~v-~~~-~~~~~~~ 209 (769)
... ..+ .+++.++|+||++... ..+.+...+.....++++|+||+...- ... ......+
T Consensus 98 ~~~----------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i 161 (323)
T 1sxj_B 98 QKK----------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAIL 161 (323)
T ss_dssp HBC----------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred hcc----------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEE
Confidence 000 001 3468899999998642 222221112222346778888765432 111 1223579
Q ss_pred EcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhH-HHHHHH
Q 046742 210 KVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLA-LITIGR 261 (769)
Q Consensus 210 ~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-i~~~~~ 261 (769)
++.+++.++..+++...+...... -..+.++.+++.++|.|.. +..+..
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 162 RYSKLSDEDVLKRLLQIIKLEDVK---YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999998876432211 1256788999999999954 444433
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=8e-10 Score=103.36 Aligned_cols=102 Identities=24% Similarity=0.350 Sum_probs=90.2
Q ss_pred EEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcccccc-ccCCcCCCEEeccCC
Q 046742 394 IRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSG-ISRLVSLQHLNLSLT 472 (769)
Q Consensus 394 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~l~~~ 472 (769)
.+.+++++|.++.+|... .++|++|++++|.++.+++..|..+++|++|+|++| .+..+|.. +..+.+|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence 457899999999888632 489999999999999998888999999999999999 66677654 689999999999999
Q ss_pred CCcccchh-hhcCCCCcEEecCCCcC
Q 046742 473 NIKELPEE-LKALVNLKCLNLDYTKS 497 (769)
Q Consensus 473 ~l~~lp~~-~~~l~~L~~L~l~~~~~ 497 (769)
+++.+|.. +..+++|++|++++|+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 99999875 89999999999999974
No 152
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.97 E-value=9.2e-12 Score=120.12 Aligned_cols=126 Identities=25% Similarity=0.285 Sum_probs=108.0
Q ss_pred CCcceeEEEEeecccccccccCCCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEE
Q 046742 388 TGKWQVIRRMSLMENQVQSLSKIPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHL 467 (769)
Q Consensus 388 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 467 (769)
+..+++++.|++++|.+..+|.+..+++|++|++++|.++.+|.. +..+++|++|++++| .++.+| .+..+++|++|
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYN-QIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEE
T ss_pred HhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCC-cCCcCC-ccccCCCCCEE
Confidence 445678999999999999999888899999999999999988764 677899999999999 677787 68999999999
Q ss_pred eccCCCCcccch--hhhcCCCCcEEecCCCcCcCccCc---------ccccCCcccceee
Q 046742 468 NLSLTNIKELPE--ELKALVNLKCLNLDYTKSLCRIPR---------HLISNFSMLYILR 516 (769)
Q Consensus 468 ~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~~p~---------~~i~~L~~L~~L~ 516 (769)
++++|.++.+|. .+..+++|++|++++|......|. ..+..+++|+.|+
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 999999998775 689999999999999974333332 3478899999997
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=2.4e-09 Score=112.01 Aligned_cols=185 Identities=14% Similarity=0.101 Sum_probs=112.7
Q ss_pred CCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCC-cEEEEEEeCccccHHHHHHHHHHHh
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGF-DFVIWVVLSRDLQIDRLQENIARKI 133 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l 133 (769)
...++|+++.++.+.+++..+..+.+.|+|++|+||||+|+.+++... ...+ ...+.+..+.......+...+....
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF--GENWRHNFLELNASDERGINVIREKVKEFA 101 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH--GGGHHHHEEEEETTCHHHHHTTHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCceEEeeccccCchHHHHHHHHHHH
Confidence 366899999999999999877666799999999999999999998861 1111 1233333332211111111000000
Q ss_pred CCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeeccCCc-ccc-ccccceE
Q 046742 134 GLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTRSAGG-CGL-MEAHRIF 209 (769)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR~~~v-~~~-~~~~~~~ 209 (769)
... ....+++.++|+||++... ....+...+.....++++|+||....- ... ......+
T Consensus 102 ~~~-----------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~ 164 (327)
T 1iqp_A 102 RTK-----------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 164 (327)
T ss_dssp HSC-----------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred hhC-----------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEE
Confidence 000 0012567899999997642 222222112222346788888875432 111 1123478
Q ss_pred EcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHH
Q 046742 210 KVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGR 261 (769)
Q Consensus 210 ~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 261 (769)
++.+++.++..+++...+...... -..+..+.+++.++|.|..+..+..
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 165 RFRPLRDEDIAKRLRYIAENEGLE---LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCE---ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 999999999999998877543311 1256788899999999986554443
No 154
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.88 E-value=8.3e-09 Score=105.19 Aligned_cols=168 Identities=11% Similarity=0.069 Sum_probs=105.2
Q ss_pred CCCchHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHhhccCCCC-----CCcEEEEEEeCccccHHHHHHH
Q 046742 58 TLGLESTFDEVWRCLG----EEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPN-----GFDFVIWVVLSRDLQIDRLQEN 128 (769)
Q Consensus 58 ~vGr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~~ 128 (769)
+.|||+|+++|...|. .+..+.+.|+|++|+|||++|+.++++...... .| ..+.+++....+...++..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHHH
Confidence 5799999999988774 356778999999999999999999998721111 22 4577888787888999999
Q ss_pred HHHHhCCCCcccccccHHHHHHHHHHHH---ccCCEEEEEecccCcccccccCCCC--C-CCCCCcEEEEeeccCCcccc
Q 046742 129 IARKIGLYDQSWKNKRLEIKAADIFKIL---SRKKFVLLLDDIWNRVDLEKLGIPP--M-NTNGSSKIVFTTRSAGGCGL 202 (769)
Q Consensus 129 i~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~~~~--~-~~~~~~~iivTtR~~~v~~~ 202 (769)
|++++...... ..... .....+.+.+ .++++++|||+++...+-+.+...+ + .......||.++...+....
T Consensus 101 I~~~L~g~~~~-~~~~~-~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 101 IWFAISKENLC-GDISL-EALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHSCCC---CCCCH-HHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHhcCCCCC-chHHH-HHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 99998543211 11222 2233333333 4567999999998653211111001 1 11112334444544333211
Q ss_pred -c-----cc--cceEEcCCCCHHHHHHHHHhhhC
Q 046742 203 -M-----EA--HRIFKVKCLEHKEAWELFQMKVG 228 (769)
Q Consensus 203 -~-----~~--~~~~~l~~l~~~~a~~l~~~~~~ 228 (769)
+ .. ...+.+.+++.+|..+++.+++.
T Consensus 179 ~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 179 QINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 11 24689999999999999988874
No 155
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.83 E-value=1.9e-08 Score=105.26 Aligned_cols=283 Identities=16% Similarity=0.134 Sum_probs=154.8
Q ss_pred ceeEEEEeeccccc-ccccCCCC-CCCccEEEccCCCCc--ccchhhhcCCCcceEEEecCCCCCccccc-cccC-----
Q 046742 391 WQVIRRMSLMENQV-QSLSKIPS-CPSLITLFLNNNNLK--VITDGFFQFMPSLKVLNLSNNQSLKQLPS-GISR----- 460 (769)
Q Consensus 391 ~~~l~~L~l~~~~~-~~~~~~~~-~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~----- 460 (769)
+.+++.|.+.++-- ..+..+.. +++|++|+|++|.+. ..... .++.++.+.+..+ .+|. .|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~----~I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMAN----FVPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTT----EECTTTTEEEETTE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccc----ccCHHHhccccccc
Confidence 45677777765411 11222223 788999999999877 33332 2233556666555 3332 4556
Q ss_pred ---CcCCCEEeccCCCCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHh
Q 046742 461 ---LVSLQHLNLSLTNIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEV 536 (769)
Q Consensus 461 ---l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l 536 (769)
+.+|+.|++.. .++.++.. +..|++|+.+++.+|. +..++..++..+.++..+............. .....+
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~--i~~~~f 172 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNR--WEHFAF 172 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTT--TTTSCE
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhcccc--cccccc
Confidence 88888888888 78877765 7788888888888875 5677777777777777666543111000000 000011
Q ss_pred hcCcCCc-EEEEEeccchhhhhhhc-ccccccccceeeecccCCCccccccCc-ccccCCCeEEEeccCCcceEEecccc
Q 046742 537 LLMENLN-VLGINLTSSHALSKFLS-SHRIQSYILHLRLELLEDSRSLNVLPL-ANIKNLESLGFRNCEKLEELKIEIGN 613 (769)
Q Consensus 537 ~~l~~L~-~L~l~~~~~~~~~~~~~-~~~~~~~l~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~ 613 (769)
..+..|+ .+.+. ....++.... .......+..+.+.+.-..... ..+ ..+++|++++++++ .++.++.....
T Consensus 173 ~~~~~L~~~i~~~--~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~--~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~ 247 (329)
T 3sb4_A 173 IEGEPLETTIQVG--AMGKLEDEIMKAGLQPRDINFLTIEGKLDNADF--KLIRDYMPNLVSLDISKT-NATTIPDFTFA 247 (329)
T ss_dssp EESCCCEEEEEEC--TTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHH--HHHHHHCTTCCEEECTTB-CCCEECTTTTT
T ss_pred ccccccceeEEec--CCCcHHHHHhhcccCccccceEEEeeeecHHHH--HHHHHhcCCCeEEECCCC-CcceecHhhhh
Confidence 2333343 22222 1111221111 0001112222222221000000 001 13678888888764 36655544332
Q ss_pred ccccccccccCccccccccEEEEecCcCCccccc--ccccCCcc-EEEEeecCcchhhcccccCCccccccCCccccccc
Q 046742 614 IQQNVCVSQVHGFQFHSLYYVVVSDCNKLRNLSW--LGLAPNLL-TIDILRCPEIEEISGQYSGEVPEMMRNLNPFARLE 690 (769)
Q Consensus 614 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~l~~L~-~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~l~~L~ 690 (769)
.+.+|++|.+.+. ++.++. +..+++|+ .+.+++ .++.+.. ..+.++++|+
T Consensus 248 -------------~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~----------~aF~~c~~L~ 300 (329)
T 3sb4_A 248 -------------QKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF----------GAFMGCDNLR 300 (329)
T ss_dssp -------------TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT----------TTTTTCTTEE
T ss_pred -------------CCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch----------hhhhCCccCC
Confidence 3678888888764 666543 66788888 888875 5665543 3567788888
Q ss_pred eecccccccccccCCCCCCCCCccEEEecCCCCCCCC
Q 046742 691 LLILETLPKLKSIYPNALPFLHLKEIKVSNCPELKKL 727 (769)
Q Consensus 691 ~L~l~~c~~L~~~~~~~~~~~~L~~L~i~~c~~L~~L 727 (769)
.+.+++ +.++.++... +.+|++|+.+
T Consensus 301 ~l~l~~-n~i~~I~~~a----------F~~~~~L~~l 326 (329)
T 3sb4_A 301 YVLATG-DKITTLGDEL----------FGNGVPSKLI 326 (329)
T ss_dssp EEEECS-SCCCEECTTT----------TCTTCCCCEE
T ss_pred EEEeCC-CccCccchhh----------hcCCcchhhh
Confidence 888866 5777777643 3566666654
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.82 E-value=1.1e-08 Score=106.95 Aligned_cols=79 Identities=15% Similarity=0.318 Sum_probs=51.7
Q ss_pred ceeEEEEeecccccc--------------------cccC--CCC--------CCCccEEEccCCCCcccchhhhcCCCcc
Q 046742 391 WQVIRRMSLMENQVQ--------------------SLSK--IPS--------CPSLITLFLNNNNLKVITDGFFQFMPSL 440 (769)
Q Consensus 391 ~~~l~~L~l~~~~~~--------------------~~~~--~~~--------~~~L~~L~l~~~~~~~~~~~~~~~l~~L 440 (769)
+++|+.|++++|.+. .+|. +.+ |++|+.|.+.+ .++.+++..|..|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 346778888877776 2222 445 78888888877 7777877778888888
Q ss_pred eEEEecCCCCCccc-cccccCCcCCCEEeccC
Q 046742 441 KVLNLSNNQSLKQL-PSGISRLVSLQHLNLSL 471 (769)
Q Consensus 441 ~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~ 471 (769)
+.|++++| .+..+ +..|..+.++.++.+..
T Consensus 127 ~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 127 KICQIRKK-TAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CEEEBCCS-SCCEECTTSSCTTTCEEEECTTC
T ss_pred ceEEcCCC-CccccchhhhcCCCceEEecCcc
Confidence 88888877 33333 33455666665555444
No 157
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.80 E-value=2.7e-08 Score=103.61 Aligned_cols=180 Identities=11% Similarity=0.078 Sum_probs=111.8
Q ss_pred CCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCc-EEEEEEeCccccHHHHHHHHHHHh
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFD-FVIWVVLSRDLQIDRLQENIARKI 133 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l 133 (769)
...++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++... ...+. ..+.++.+......
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~---------- 83 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGID---------- 83 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTCTT----------
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccChH----------
Confidence 356899999999999999876655689999999999999999998851 11111 12333433221110
Q ss_pred CCCCcccccccHHHHHHHHHHH--H-ccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeeccCC-cccc-cccc
Q 046742 134 GLYDQSWKNKRLEIKAADIFKI--L-SRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTRSAG-GCGL-MEAH 206 (769)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR~~~-v~~~-~~~~ 206 (769)
........+.+. + .+++.++|+||++... ....+...+.....++++|+||.... +... ....
T Consensus 84 ----------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 84 ----------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp ----------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred ----------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 000111111110 1 2567899999997642 22333222333345677888776543 2111 1223
Q ss_pred ceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHH
Q 046742 207 RIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITI 259 (769)
Q Consensus 207 ~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 259 (769)
..+++.+++.++..+++...+...... -..+..+.+++.++|.+..+...
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCC---BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 579999999999999998877543311 12567788999999999765443
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=1.3e-08 Score=107.31 Aligned_cols=98 Identities=20% Similarity=0.298 Sum_probs=55.7
Q ss_pred eeccc-ccccccCCCCCCCccEEEccC-CCCcccchhhhcCCCcceEEEecCCCCCccc-cccccCCcCCCEEeccCCCC
Q 046742 398 SLMEN-QVQSLSKIPSCPSLITLFLNN-NNLKVITDGFFQFMPSLKVLNLSNNQSLKQL-PSGISRLVSLQHLNLSLTNI 474 (769)
Q Consensus 398 ~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~~~l 474 (769)
+.+++ .+..+|.+..+.+|++|+|++ |.++.+++..|..+++|++|+|++| .+..+ |..|.+|.+|++|+|++|++
T Consensus 14 ~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 44444 555555555556666666664 6666666555666666666666666 33333 33456666666666666666
Q ss_pred cccchhhhcCCCCcEEecCCCc
Q 046742 475 KELPEELKALVNLKCLNLDYTK 496 (769)
Q Consensus 475 ~~lp~~~~~l~~L~~L~l~~~~ 496 (769)
+.+|..+....+|+.|++.+|+
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSSC
T ss_pred ceeCHHHcccCCceEEEeeCCC
Confidence 6665543333336666666554
No 159
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.79 E-value=1.6e-07 Score=97.88 Aligned_cols=177 Identities=14% Similarity=0.074 Sum_probs=108.3
Q ss_pred CCCCCCCchHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHH
Q 046742 54 PIPQTLGLESTFDEVWRCLGE-----EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQEN 128 (769)
Q Consensus 54 ~~~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 128 (769)
....++|++..++++.+++.. .....|.|+|++|+|||++|+.+++.. ... .++++++......++..
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~~- 82 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLAA- 82 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHHH-
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHHH-
Confidence 346789999999999888852 344678899999999999999999987 222 34454433322222211
Q ss_pred HHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc--c-------ccccCCC-CCC----------CCCCc
Q 046742 129 IARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV--D-------LEKLGIP-PMN----------TNGSS 188 (769)
Q Consensus 129 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~-------~~~~~~~-~~~----------~~~~~ 188 (769)
.+. +. ..++.+|+|||++... . ++..... ... ...+.
T Consensus 83 ---~l~-------------------~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 83 ---ILA-------------------NS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp ---HHT-------------------TT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred ---HHH-------------------Hh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 111 00 1245688888886532 1 1110000 000 01235
Q ss_pred EEEEeeccCCc-ccc-cc-ccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHHHh
Q 046742 189 KIVFTTRSAGG-CGL-ME-AHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGRAM 263 (769)
Q Consensus 189 ~iivTtR~~~v-~~~-~~-~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 263 (769)
++|.||..... ... .. -...+.+.+++.++..+++.+.+..... .-..+..+.+++.++|.|..+..+...+
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV---RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 66666664432 111 11 2257899999999999999887754331 1225778899999999998887776554
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.75 E-value=4.4e-08 Score=104.45 Aligned_cols=195 Identities=12% Similarity=0.093 Sum_probs=109.3
Q ss_pred CCCCCCchHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHh
Q 046742 55 IPQTLGLESTFDEVWRCLGEEH-VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKI 133 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 133 (769)
...++||+..++.+.+.+..+. .+.+.|+|+.|+||||+|+.+++... ....+. ...+... .....+....
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~-~~~~~~---~~~~~~~----~~~~~~~~~~ 86 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGIT---ATPCGVC----DNCREIEQGR 86 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS-CTTCSC---SSCCSSS----HHHHHHHTSC
T ss_pred hhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCCCCC---CCCCccc----HHHHHHhccC
Confidence 3568999999999999997654 45788999999999999999998872 111110 0000000 0011111000
Q ss_pred C-----CCCc-ccccccHHHHHHHHHHH-HccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeeccCC-cccc-
Q 046742 134 G-----LYDQ-SWKNKRLEIKAADIFKI-LSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTRSAG-GCGL- 202 (769)
Q Consensus 134 ~-----~~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR~~~-v~~~- 202 (769)
. .... .....+.......+... ..+++.++|+||++... ....+...+.....+..+|++|.... +...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp CSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHH
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHH
Confidence 0 0000 00111122222111100 13467899999997542 22222111212234567777776443 2111
Q ss_pred ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHH
Q 046742 203 MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIG 260 (769)
Q Consensus 203 ~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 260 (769)
......+++.+++.++..+++.+.+...... -..+.++.+++.++|.|..+..+.
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~---~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIA---HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1223678999999999999998776432211 125678889999999998776554
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.72 E-value=2.1e-07 Score=99.62 Aligned_cols=103 Identities=23% Similarity=0.249 Sum_probs=77.4
Q ss_pred CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcccc-ccccCCcCCCEEeccCCCCcccchhhhcCCCCc
Q 046742 410 IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLP-SGISRLVSLQHLNLSLTNIKELPEELKALVNLK 488 (769)
Q Consensus 410 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~ 488 (769)
+.++ +|+.+.+..+ ++.++...|..+ +|+.+.+..+ ++.++ ..|.+|.+|+.+++..|+++.+|...-...+|+
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~ 206 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIE 206 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCS
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccC
Confidence 4554 6888887666 777877777774 6888888763 55554 467888888888888888888887755568888
Q ss_pred EEecCCCcCcCccCcccccCCcccceeeeec
Q 046742 489 CLNLDYTKSLCRIPRHLISNFSMLYILRIVD 519 (769)
Q Consensus 489 ~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 519 (769)
.+.+..+ +..++..++.++.+|+.+.+..
T Consensus 207 ~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 207 EVLLPVT--LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCCEECCT
T ss_pred EEEeCCc--hheehhhHhhCCCCCCEEecCC
Confidence 8888754 6778887788888888888764
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.71 E-value=4.3e-08 Score=103.41 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=88.5
Q ss_pred cEEEccCC-CCcccchhhhcCCCcceEEEecC-CCCCcccc-ccccCCcCCCEEeccCCCCcccch-hhhcCCCCcEEec
Q 046742 417 ITLFLNNN-NLKVITDGFFQFMPSLKVLNLSN-NQSLKQLP-SGISRLVSLQHLNLSLTNIKELPE-ELKALVNLKCLNL 492 (769)
Q Consensus 417 ~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l 492 (769)
..++++++ .++.+|. +..+++|++|+|++ | .++.+| ..|++|.+|++|+|++|+|+.+|. .+++|++|++|+|
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 35688888 8999988 89999999999997 7 677776 579999999999999999998776 5799999999999
Q ss_pred CCCcCcCccCcccccCCcccceeeeecccccc
Q 046742 493 DYTKSLCRIPRHLISNFSMLYILRIVDCHYFE 524 (769)
Q Consensus 493 ~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~ 524 (769)
++|. +..+|...+..+. |+.|++.+|.+..
T Consensus 88 ~~N~-l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNA-LESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSSC-CSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCc-cceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9997 7889887666666 9999999887643
No 163
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.70 E-value=2.5e-08 Score=95.18 Aligned_cols=152 Identities=15% Similarity=0.148 Sum_probs=86.4
Q ss_pred CCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCC----CCcEEEEEEeCccccHHHHHHHHH
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPN----GFDFVIWVVLSRDLQIDRLQENIA 130 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~ 130 (769)
...++||+++++++.+.+.....+.+.|+|++|+|||++|+.+++....... .....+++++.. +.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---- 90 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV---- 90 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH----
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh----
Confidence 3678999999999999998776678899999999999999999988621000 112344543211 11
Q ss_pred HHhCCCCcccccccHHHHHHHHHHHH--ccCCEEEEEecccCcc---------cccccCCCCCCCCCCcEEEEeeccCCc
Q 046742 131 RKIGLYDQSWKNKRLEIKAADIFKIL--SRKKFVLLLDDIWNRV---------DLEKLGIPPMNTNGSSKIVFTTRSAGG 199 (769)
Q Consensus 131 ~~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~~~~~~~~~~~~~~iivTtR~~~v 199 (769)
.... ...........+.+.+ .+++.+|||||++... ++..+...+.. ..+..+|+||.....
T Consensus 91 ---~~~~---~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~ 163 (195)
T 1jbk_A 91 ---AGAK---YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEY 163 (195)
T ss_dssp ---TTTC---SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHHH
T ss_pred ---ccCC---ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cCCeEEEEeCCHHHH
Confidence 0000 1111122222222222 3567899999997642 11111101111 123456666665431
Q ss_pred ------cc-cccccceEEcCCCCHHHHHHHH
Q 046742 200 ------CG-LMEAHRIFKVKCLEHKEAWELF 223 (769)
Q Consensus 200 ------~~-~~~~~~~~~l~~l~~~~a~~l~ 223 (769)
.. ..+....+.+.+++.++..+++
T Consensus 164 ~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 164 RQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 11 1112236899999998887664
No 164
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.67 E-value=2.8e-06 Score=89.01 Aligned_cols=261 Identities=15% Similarity=0.073 Sum_probs=138.5
Q ss_pred CCCCCCchHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHH
Q 046742 55 IPQTLGLESTFDEVWRCLGE-----EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENI 129 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 129 (769)
...++|++..++++..++.. ...+.|.|+|++|+|||++|+.+++.. ...| +.+++........+
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~~---- 97 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSGDL---- 97 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchhHH----
Confidence 36789999999999998853 344578899999999999999999886 2332 23333222111111
Q ss_pred HHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc---------ccccCCC-----------CCCCCCCcE
Q 046742 130 ARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD---------LEKLGIP-----------PMNTNGSSK 189 (769)
Q Consensus 130 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---------~~~~~~~-----------~~~~~~~~~ 189 (769)
...+.+ ..+..+|+||+++.... ++..... .....++..
T Consensus 98 -------------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 98 -------------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp -------------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred -------------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 111111 23556888888875310 1111100 000112345
Q ss_pred EEEeeccCCccc-c-c-cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHHHh---
Q 046742 190 IVFTTRSAGGCG-L-M-EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGRAM--- 263 (769)
Q Consensus 190 iivTtR~~~v~~-~-~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l--- 263 (769)
+|.||....... . . +....+.+++++.++..+++.+.+...... -..+..+.+++.+.|.|-.+..+...+
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 233 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT---CEEKAALEIAKRSRSTPRIALRLLKRVRDF 233 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE---ECHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 666655433211 0 1 123579999999999999998876433211 125678889999999996555443321
Q ss_pred ---cCC--CChhHHHHHHHHHHhcccCCCChhhhhhHHhhhcCCCCCCccchhHHHHHHhhcCccccchhHhHHHH-HHH
Q 046742 264 ---AFK--KTPQEWKDAIQVLRRSASEFPGMDEIKSCFLYCCLFPEDCDISKIDLIDCWIGEGFFDEYDRGYTIIG-DLL 337 (769)
Q Consensus 264 ---~~~--~~~~~w~~~l~~l~~~~~~~~~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~-~L~ 337 (769)
... -+.+....+++.+......++.. .+..+..++-. .+..+....+... .|. ......+.++ .|+
T Consensus 234 a~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~--e~~~l~~l~~~-~~~~~~~~~~a~~---lg~--~~~tl~~~l~~~l~ 305 (338)
T 3pfi_A 234 ADVNDEEIITEKRANEALNSLGVNELGFDAM--DLRYLELLTAA-KQKPIGLASIAAA---LSE--DENTIEDVIEPYLL 305 (338)
T ss_dssp HHHTTCSEECHHHHHHHHHHHTCCTTCCCHH--HHHHHHHHHHS-CSCCBCHHHHHHH---TTC--CHHHHHHTTHHHHH
T ss_pred HHhhcCCccCHHHHHHHHHHhCCcccCCCHH--HHHHHHHHHHh-cCCCchHHHHHHH---hCC--CHHHHHHHHhHHHH
Confidence 111 23444444444433222122211 13333333322 3333333333321 121 2224444555 788
Q ss_pred HhhcccccCCCceEEhHHHH
Q 046742 338 RACLLEEVNDNNVKLHDVIR 357 (769)
Q Consensus 338 ~~sll~~~~~~~~~mhdl~~ 357 (769)
+.+++.....+.+.-..-+.
T Consensus 306 ~~gli~~~~~g~~~t~~~~~ 325 (338)
T 3pfi_A 306 ANGYIERTAKGRIASAKSYS 325 (338)
T ss_dssp HTTSEEEETTEEEECHHHHH
T ss_pred HcCceecCCCcccccHHHHH
Confidence 88888776555444433333
No 165
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.60 E-value=6e-07 Score=91.59 Aligned_cols=177 Identities=21% Similarity=0.200 Sum_probs=103.4
Q ss_pred CCCCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccH
Q 046742 56 PQTLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQI 122 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 122 (769)
..++|.++.+++|.+.+.. ...+.+.|+|++|+|||++|+.+++.. ... .+.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~---~~~v~~~~~~~- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NAT---FIRVVGSELVK- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCE---EEEEEGGGGCC-
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehHHHHH-
Confidence 6689999999999888742 345678999999999999999999987 222 22333221100
Q ss_pred HHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc----------------cccccCCCC--CCC
Q 046742 123 DRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV----------------DLEKLGIPP--MNT 184 (769)
Q Consensus 123 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~~~~~~--~~~ 184 (769)
. ............+......++.+|+|||++... .+..+...+ ...
T Consensus 90 -------------~---~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 90 -------------K---FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp -------------C---STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred -------------h---ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0 011111222222233334567899999996431 011110000 012
Q ss_pred CCCcEEEEeeccCCccc-----cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCC-chhHHHH
Q 046742 185 NGSSKIVFTTRSAGGCG-----LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDG-LPLALIT 258 (769)
Q Consensus 185 ~~~~~iivTtR~~~v~~-----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~ 258 (769)
..+..||.||...+... ...-...+.++..+.++..+++...+......... ....+++.+.| .|-.+..
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDV----NLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHHCTTCCHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcC----CHHHHHHHcCCCCHHHHHH
Confidence 23566777776543321 11223478999999999999998887654422222 24667777776 4544444
Q ss_pred H
Q 046742 259 I 259 (769)
Q Consensus 259 ~ 259 (769)
+
T Consensus 230 l 230 (285)
T 3h4m_A 230 I 230 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 166
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.57 E-value=2.7e-08 Score=98.86 Aligned_cols=173 Identities=10% Similarity=0.048 Sum_probs=103.1
Q ss_pred CCCCCCc---hHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHH
Q 046742 55 IPQTLGL---ESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIAR 131 (769)
Q Consensus 55 ~~~~vGr---~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 131 (769)
...|+|+ +..++.+..+...+..+.+.|+|++|+||||+|+.+++... .....+.|+++...... +.+
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~~~~~------~~~ 97 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGIHASI------STA 97 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGGGS------CGG
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHH------HHH
Confidence 3567763 36677777777655677899999999999999999998872 11234567665432110 000
Q ss_pred HhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc----ccccCCCCC--CCCCCcEEEEeeccCCc--c---
Q 046742 132 KIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD----LEKLGIPPM--NTNGSSKIVFTTRSAGG--C--- 200 (769)
Q Consensus 132 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~~~~~--~~~~~~~iivTtR~~~v--~--- 200 (769)
..+.+ .++.+||+||++.... .+.+...+. ......++|+||+...- .
T Consensus 98 --------------------~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~ 156 (242)
T 3bos_A 98 --------------------LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVL 156 (242)
T ss_dssp --------------------GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCC
T ss_pred --------------------HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhh
Confidence 00011 3456899999975421 111111110 01112247777764321 0
Q ss_pred cc-c---cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHH
Q 046742 201 GL-M---EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIG 260 (769)
Q Consensus 201 ~~-~---~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 260 (769)
.. . .....+++++++.++..+++...+..... .-..+..+.+++.++|.+-.+..+.
T Consensus 157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL---QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 10 1 11267999999999999999887643221 1225778889999999887665443
No 167
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.54 E-value=2.7e-06 Score=86.04 Aligned_cols=196 Identities=14% Similarity=0.089 Sum_probs=108.4
Q ss_pred CCCCCchHHHHHHHHH-------hc---cCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHH
Q 046742 56 PQTLGLESTFDEVWRC-------LG---EEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRL 125 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~-------L~---~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 125 (769)
..++|++..++++... +. ....+.+.|+|++|+|||++|+.+++.. ...| +.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~------ 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDK------ 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGG------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHH------
Confidence 5678988887777663 32 3455678999999999999999999986 2222 22222211
Q ss_pred HHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCc---------------ccccccCCCCCCCCCCcEE
Q 046742 126 QENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNR---------------VDLEKLGIPPMNTNGSSKI 190 (769)
Q Consensus 126 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------------~~~~~~~~~~~~~~~~~~i 190 (769)
..+.. ...........+......+..+|+|||++.. ..+..+.......+.+..|
T Consensus 101 ------~~g~~----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ------MIGFS----ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ------CTTCC----HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ------hcCCc----hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 00100 0111112222233333456789999998653 1111221111112334456
Q ss_pred EEeeccCCcccc---c-cccceEEcCCCCH-HHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCC------chhHHHHH
Q 046742 191 VFTTRSAGGCGL---M-EAHRIFKVKCLEH-KEAWELFQMKVGRETLESHLQIPELAEIVAKECDG------LPLALITI 259 (769)
Q Consensus 191 ivTtR~~~v~~~---~-~~~~~~~l~~l~~-~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g------~Plai~~~ 259 (769)
|.||...+.... . .-...+++++++. ++..+++.+... -..+..+.+++.+.| .+-++..+
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~--------~~~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN--------FKDKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC--------SCHHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC--------CCHHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 667765532111 1 1245689999998 666666665321 115667888888887 44444444
Q ss_pred HHHhcCCCChhHHHHHHHHHHhc
Q 046742 260 GRAMAFKKTPQEWKDAIQVLRRS 282 (769)
Q Consensus 260 ~~~l~~~~~~~~w~~~l~~l~~~ 282 (769)
-.... ..+...+..+++.+...
T Consensus 243 ~~a~~-~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 243 EMSLQ-MDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHHTT-SCGGGHHHHHHHHHHHT
T ss_pred HHHhh-hchHHHHHHHHHHHHHc
Confidence 33322 24556677777766554
No 168
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.51 E-value=4.3e-07 Score=100.64 Aligned_cols=188 Identities=12% Similarity=0.076 Sum_probs=107.5
Q ss_pred CCCCCCchHHHHHHHHHhcc-----------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeC
Q 046742 55 IPQTLGLESTFDEVWRCLGE-----------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLS 117 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~-----------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 117 (769)
...++|++..++++.+++.. +..+.+.|+|++|+||||+|+.+++.. . + .++.++++
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~--~-~~i~in~s 111 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---G--Y-DILEQNAS 111 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---T--C-EEEEECTT
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---C--C-CEEEEeCC
Confidence 36689999999999999964 134689999999999999999999987 1 2 24455555
Q ss_pred ccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHH--HccCCEEEEEecccCccc-----ccccCCCCCCCCCCcEE
Q 046742 118 RDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKI--LSRKKFVLLLDDIWNRVD-----LEKLGIPPMNTNGSSKI 190 (769)
Q Consensus 118 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~--l~~k~~LlVlDdv~~~~~-----~~~~~~~~~~~~~~~~i 190 (769)
...... .....+....... ..........+. ..+++.+||+|+++.... +..+...+. . .+..|
T Consensus 112 ~~~~~~-~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~-~-~~~~i 182 (516)
T 1sxj_A 112 DVRSKT-LLNAGVKNALDNM------SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR-K-TSTPL 182 (516)
T ss_dssp SCCCHH-HHHHTGGGGTTBC------CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH-H-CSSCE
T ss_pred CcchHH-HHHHHHHHHhccc------cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH-h-cCCCE
Confidence 443332 2222222111000 000000000001 135678999999976421 111111111 1 12335
Q ss_pred EEeeccCC---ccccccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCC-chhHHHHHH
Q 046742 191 VFTTRSAG---GCGLMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDG-LPLALITIG 260 (769)
Q Consensus 191 ivTtR~~~---v~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~ 260 (769)
|+++.... +.........+.+++++.++..+++.+.+.......+ .+..+.|++.++| ++-++..+.
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 55554332 2222223457899999999999999887643331122 3557889999998 455555553
No 169
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.50 E-value=4e-08 Score=104.08 Aligned_cols=156 Identities=16% Similarity=0.127 Sum_probs=99.8
Q ss_pred eEEEEeeccccccccc-----C-C-CCCCCccEEEccCCCCcccc-hhhhcCCCcceEEEecCCCCCccc-cccc-----
Q 046742 393 VIRRMSLMENQVQSLS-----K-I-PSCPSLITLFLNNNNLKVIT-DGFFQFMPSLKVLNLSNNQSLKQL-PSGI----- 458 (769)
Q Consensus 393 ~l~~L~l~~~~~~~~~-----~-~-~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~l-p~~i----- 458 (769)
+++.|++++|.++... . + ....+|++|++++|.+.... ..+...+++|++|+|++| .++.. ...+
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLL 151 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHH
Confidence 5778888888765421 1 1 23468888888888775432 222344567888888888 44332 2222
Q ss_pred cCCcCCCEEeccCCCCcc-----cchhhhcCCCCcEEecCCCcCcCcc-----CcccccCCcccceeeeeccccccccch
Q 046742 459 SRLVSLQHLNLSLTNIKE-----LPEELKALVNLKCLNLDYTKSLCRI-----PRHLISNFSMLYILRIVDCHYFEEVEN 528 (769)
Q Consensus 459 ~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l~~~-----p~~~i~~L~~L~~L~l~~~~~~~~~~~ 528 (769)
....+|++|++++|.++. ++..+..+++|++|++++|. ++.. +.. +...++|++|++++|.+....
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~g-- 227 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTA-- 227 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHHH--
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHHH--
Confidence 245778888888888763 55566778888888888886 3332 222 566778888888888764321
Q ss_pred hhhHHHHhhcCcCCcEEEEEeccch
Q 046742 529 CEVLMEEVLLMENLNVLGINLTSSH 553 (769)
Q Consensus 529 ~~~~~~~l~~l~~L~~L~l~~~~~~ 553 (769)
.......+...++|+.|+++.+...
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 1223345566778888887766543
No 170
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.50 E-value=1.6e-06 Score=93.58 Aligned_cols=177 Identities=14% Similarity=0.137 Sum_probs=105.1
Q ss_pred CCCCCCCchHHH---HHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHH
Q 046742 54 PIPQTLGLESTF---DEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIA 130 (769)
Q Consensus 54 ~~~~~vGr~~~~---~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 130 (769)
....+||.+..+ ..+...+..+..+.+.|+|++|+||||+|+.+++.. ...| +-+.... ..... ++
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f---~~l~a~~-~~~~~-ir--- 92 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADV---ERISAVT-SGVKE-IR--- 92 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE---EEEETTT-CCHHH-HH---
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe---EEEEecc-CCHHH-HH---
Confidence 346789999998 788888887777889999999999999999999987 2222 1222111 11111 11
Q ss_pred HHhCCCCcccccccHHHHHHHHHH-HHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEE-eeccCC--cc-ccc
Q 046742 131 RKIGLYDQSWKNKRLEIKAADIFK-ILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVF-TTRSAG--GC-GLM 203 (769)
Q Consensus 131 ~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iiv-TtR~~~--v~-~~~ 203 (769)
........ ...+++.+|++|+++... ..+.+...+. .+ ...+|. ||.+.. +. ...
T Consensus 93 ----------------~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le-~~-~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 93 ----------------EAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIE-DG-TITFIGATTENPSFELNSALL 154 (447)
T ss_dssp ----------------HHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHH-TT-SCEEEEEESSCGGGSSCHHHH
T ss_pred ----------------HHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHh-cC-ceEEEecCCCCcccccCHHHh
Confidence 11111111 124678899999997642 2222211111 12 234444 444432 11 112
Q ss_pred cccceEEcCCCCHHHHHHHHHhhhCCCcc----CCCCCHHHHHHHHHHHcCCchhHHHHH
Q 046742 204 EAHRIFKVKCLEHKEAWELFQMKVGRETL----ESHLQIPELAEIVAKECDGLPLALITI 259 (769)
Q Consensus 204 ~~~~~~~l~~l~~~~a~~l~~~~~~~~~~----~~~~~~~~~~~~i~~~~~g~Plai~~~ 259 (769)
.....+.+.+++.++..+++.+.+..... ....-..+..+.+++.++|.+-.+..+
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 23457899999999999999888754110 011123567788889899888655433
No 171
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.50 E-value=2.1e-07 Score=98.29 Aligned_cols=193 Identities=13% Similarity=0.134 Sum_probs=109.7
Q ss_pred CCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCc-EEEEEEeCccccHHHHHHHHHHHh
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFD-FVIWVVLSRDLQIDRLQENIARKI 133 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l 133 (769)
...++|+++.++.+..++.....+.+.|+|++|+||||+|+.+++... ....+. .++.++.+.......+ ++.....
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 113 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY-GPDLMKSRILELNASDERGISIV-REKVKNF 113 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH-HHHHHTTSEEEECSSSCCCHHHH-TTHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC-CCcccccceEEEccccccchHHH-HHHHHHH
Confidence 467899999999999999876555589999999999999999998751 000011 1233333332222222 2211111
Q ss_pred C-CCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeeccCC-cccc-ccccce
Q 046742 134 G-LYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTRSAG-GCGL-MEAHRI 208 (769)
Q Consensus 134 ~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR~~~-v~~~-~~~~~~ 208 (769)
. ..... .... .....-.++.-++++|+++... ....+...+.......++|++|.... +... ......
T Consensus 114 ~~~~~~~-~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 114 ARLTVSK-PSKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp HHSCCCC-CCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred hhhcccc-cchh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCce
Confidence 1 00000 0000 0000112355799999987542 11222111111223566777765432 2111 112347
Q ss_pred EEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHH
Q 046742 209 FKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITI 259 (769)
Q Consensus 209 ~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 259 (769)
+++.+++.++..+++.+.+...... -..+..+.|++.++|.|..+..+
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENVK---CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 8999999999999998876543311 22577899999999999865433
No 172
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.49 E-value=3.5e-06 Score=90.05 Aligned_cols=142 Identities=14% Similarity=0.264 Sum_probs=105.2
Q ss_pred eEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEecc
Q 046742 393 VIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLS 470 (769)
Q Consensus 393 ~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~ 470 (769)
+|+.+.+..+ ++.+.. +.++ +|+.+.+.. .++.+....|..|++|+.+++++| .+..+|...-...+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeC
Confidence 5777777654 555544 5554 699999986 688888888999999999999988 677787654446899999998
Q ss_pred CCCCcccchh-hhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeeccccccccchhhhHHHHhhcCcCCcEEEEEe
Q 046742 471 LTNIKELPEE-LKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDCHYFEEVENCEVLMEEVLLMENLNVLGINL 549 (769)
Q Consensus 471 ~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 549 (769)
. .++.++.. +.++++|+.+.+..+ +..++..++.+ ++|+.+.+..+ . ..++. ..+..+++|+.+.+..
T Consensus 212 ~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i-~~I~~-----~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 212 V-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-V-TNIAS-----RAFYYCPELAEVTTYG 280 (401)
T ss_dssp T-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-C-CEECT-----TTTTTCTTCCEEEEES
T ss_pred C-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-c-cEECh-----hHhhCCCCCCEEEeCC
Confidence 4 47777665 788999999999875 68888887877 78999988532 2 11211 2356778888887763
No 173
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.46 E-value=2.6e-06 Score=85.63 Aligned_cols=180 Identities=14% Similarity=0.073 Sum_probs=100.5
Q ss_pred CCCCCchHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 56 PQTLGLESTFDEVWRCLG---E---------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
..++|.++.++++.+++. . ...+.|.|+|++|+|||++|+.+++.. ... .+.+.++.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHh--
Confidence 568999999888876652 1 234568899999999999999999987 222 23444333110
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc-------------c----ccccCCCCC--CC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV-------------D----LEKLGIPPM--NT 184 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~----~~~~~~~~~--~~ 184 (769)
. ............+.......+.+|+|||++... . +..+...+. ..
T Consensus 78 -----------~----~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 78 -----------V----IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp -----------S----STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred -----------h----ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 0 011111222222333334567899999997531 0 111110010 11
Q ss_pred CCCcEEEEeeccCCccc-c-c---cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchh-HHHH
Q 046742 185 NGSSKIVFTTRSAGGCG-L-M---EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPL-ALIT 258 (769)
Q Consensus 185 ~~~~~iivTtR~~~v~~-~-~---~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~ 258 (769)
..+..||.||....... . . +-...+.++..+.++-.+++...+..... ..........+++.+.|.+- .+..
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCHHHHHH
Confidence 23556666665443211 1 1 22357889999999999999887643321 12223345788888888754 4444
Q ss_pred HH
Q 046742 259 IG 260 (769)
Q Consensus 259 ~~ 260 (769)
+.
T Consensus 221 l~ 222 (262)
T 2qz4_A 221 IC 222 (262)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 174
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.45 E-value=3.8e-07 Score=98.70 Aligned_cols=182 Identities=15% Similarity=0.133 Sum_probs=104.3
Q ss_pred CCCC-CchHH--HHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHH
Q 046742 56 PQTL-GLEST--FDEVWRCLGEEH-VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIAR 131 (769)
Q Consensus 56 ~~~v-Gr~~~--~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 131 (769)
..|| |.... ...+..+...++ ...+.|+|++|+||||||+.+++........ ..+++++. ..+..++..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~-~~v~~v~~------~~~~~~~~~ 177 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPD-LRVMYITS------EKFLNDLVD 177 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCS-SCEEEEEH------HHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCC-CeEEEeeH------HHHHHHHHH
Confidence 3455 64433 344455544433 6678999999999999999999876211011 12455543 334444444
Q ss_pred HhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc----ccccCCCCCC-CCCCcEEEEeeccCC-----ccc
Q 046742 132 KIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD----LEKLGIPPMN-TNGSSKIVFTTRSAG-----GCG 201 (769)
Q Consensus 132 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~~~~~~-~~~~~~iivTtR~~~-----v~~ 201 (769)
.+... . ...+.+.++.+.-+|++||++.... .+.+...+.. ...|..||+||.+.. +..
T Consensus 178 ~~~~~-------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~ 246 (440)
T 2z4s_A 178 SMKEG-------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQD 246 (440)
T ss_dssp HHHTT-------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCH
T ss_pred HHHcc-------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHH
Confidence 44211 1 1223344443677999999975431 1112111100 124567888887632 111
Q ss_pred ----cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHH
Q 046742 202 ----LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALIT 258 (769)
Q Consensus 202 ----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 258 (769)
.+.....+.+++++.++..+++.+.+.......+ .+..+.|++.+.|.+-.+.-
T Consensus 247 ~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 247 RLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHH
T ss_pred HHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHH
Confidence 1122257899999999999999887743221111 35677888999988865543
No 175
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.44 E-value=1.2e-05 Score=83.01 Aligned_cols=181 Identities=13% Similarity=0.079 Sum_probs=104.9
Q ss_pred CCCCCchHHHHHHHHHhcc------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 56 PQTLGLESTFDEVWRCLGE------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
..++|.++.++.|.+.+.. ...+.|.|+|++|+|||++|+.+++... .. ..+.+..+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~---~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NS---TFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SC---EEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--CC---cEEEEEhHHHHh--
Confidence 5678999999999887631 2346789999999999999999999861 11 223333332110
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc-------------ccccC---CCCCCCCCC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD-------------LEKLG---IPPMNTNGS 187 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~---~~~~~~~~~ 187 (769)
.+...........+...-..++.+|+||+++.... ...+. ..+.....+
T Consensus 85 ---------------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 85 ---------------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp ---------------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred ---------------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 00111222222222222235788999999975410 00110 001112234
Q ss_pred cEEEEeeccCCccc-cc--cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCc-hhHHHHHHH
Q 046742 188 SKIVFTTRSAGGCG-LM--EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGL-PLALITIGR 261 (769)
Q Consensus 188 ~~iivTtR~~~v~~-~~--~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~~ 261 (769)
..||.||....... .+ +-...+.++..+.++-.++++..+...... ......+.|++.+.|. +-.|..+..
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~---l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS---LTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC---CCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55555665443211 00 223568899999999999998877543311 1246678899999887 445665553
No 176
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.44 E-value=8.4e-07 Score=94.21 Aligned_cols=197 Identities=11% Similarity=0.104 Sum_probs=102.4
Q ss_pred CCCCCCchHHHHHH---HHHhccCCc--cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc----cccHHHH
Q 046742 55 IPQTLGLESTFDEV---WRCLGEEHV--GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR----DLQIDRL 125 (769)
Q Consensus 55 ~~~~vGr~~~~~~l---~~~L~~~~~--~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~----~~~~~~~ 125 (769)
...+||++..++.+ .+.+..... +.+.|+|++|+|||++|+.+++.. .....| +.+.... .......
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~~~~~~---~~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL-GPDTPF---TAIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH-CSSCCE---EEEEGGGGSCSSSCHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh-cccCCc---ccccchhhhhcccchhHH
Confidence 36789999997774 444444433 589999999999999999999998 211122 2222211 2233333
Q ss_pred HHHHHHHh-CC--------------------CC-------cccc---cccHHHHHHHHHHHH--ccC----CEEEEEecc
Q 046742 126 QENIARKI-GL--------------------YD-------QSWK---NKRLEIKAADIFKIL--SRK----KFVLLLDDI 168 (769)
Q Consensus 126 ~~~i~~~l-~~--------------------~~-------~~~~---~~~~~~~~~~l~~~l--~~k----~~LlVlDdv 168 (769)
+.+..+.. +. .. .... ............... .++ +.+|+||++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi 198 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEV 198 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESG
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhc
Confidence 33333321 00 00 0000 111222222222211 133 359999999
Q ss_pred cCcc--cccccCCCCCCCCCCcEEEEeecc-------------CCcc-ccccccceEEcCCCCHHHHHHHHHhhhCCCcc
Q 046742 169 WNRV--DLEKLGIPPMNTNGSSKIVFTTRS-------------AGGC-GLMEAHRIFKVKCLEHKEAWELFQMKVGRETL 232 (769)
Q Consensus 169 ~~~~--~~~~~~~~~~~~~~~~~iivTtR~-------------~~v~-~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~ 232 (769)
+... ....+...+...... .++++|.. ..+. ........+.+++++.++..+++.+.+.....
T Consensus 199 ~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 199 HMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp GGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred cccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 7642 111111111111112 34444431 1111 11122345899999999999999987654321
Q ss_pred CCCCCHHHHHHHHHHHcC-CchhHHHHH
Q 046742 233 ESHLQIPELAEIVAKECD-GLPLALITI 259 (769)
Q Consensus 233 ~~~~~~~~~~~~i~~~~~-g~Plai~~~ 259 (769)
.-..+..+.+++.+. |.|-.+..+
T Consensus 278 ---~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 278 ---EMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp ---CBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ---CCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 122567888999987 777655443
No 177
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.44 E-value=6e-06 Score=86.85 Aligned_cols=180 Identities=13% Similarity=0.068 Sum_probs=104.9
Q ss_pred CCCCCchHHHHHHHHHhcc------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 56 PQTLGLESTFDEVWRCLGE------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
..++|.+..+++|.+.+.. ...+.|.|+|++|+|||++|+.+++.. .. ..+.++++.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~~- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTSK- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCCS-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhcc-
Confidence 5679999999999888742 345678999999999999999999886 22 2344444321110
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHH-HHccCCEEEEEecccCcc-------------cccccCCC---C-CCCC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFK-ILSRKKFVLLLDDIWNRV-------------DLEKLGIP---P-MNTN 185 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~-------------~~~~~~~~---~-~~~~ 185 (769)
+.. ........+.. .-..++.+|+||+++... ....+... . ....
T Consensus 157 ----------------~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 157 ----------------WVG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp ----------------STT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred ----------------ccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 011 11112222222 223567899999995421 01111100 1 1112
Q ss_pred CCcEEEEeeccCCccc-cc--cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCC-chhHHHHHHH
Q 046742 186 GSSKIVFTTRSAGGCG-LM--EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDG-LPLALITIGR 261 (769)
Q Consensus 186 ~~~~iivTtR~~~v~~-~~--~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~ 261 (769)
.+..||.||....... .. +-...+.+...+.++..+++...+...... -..+..+.+++.+.| .+-.+..+..
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC---LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC---CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC---ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455565665432211 10 223467899999999999998776443211 125677889999988 5556666654
Q ss_pred H
Q 046742 262 A 262 (769)
Q Consensus 262 ~ 262 (769)
.
T Consensus 297 ~ 297 (357)
T 3d8b_A 297 E 297 (357)
T ss_dssp H
T ss_pred H
Confidence 3
No 178
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.40 E-value=5.9e-06 Score=85.67 Aligned_cols=179 Identities=15% Similarity=0.107 Sum_probs=105.3
Q ss_pred CCCCCchHHHHHHHHHhc----------c--CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 56 PQTLGLESTFDEVWRCLG----------E--EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~----------~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
..++|.++.+++|.+.+. . ...+.|.|+|++|+|||++|+.+++.. ... .+.++. .
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~v~~------~ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSS------S 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCE---EEEEEH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCC---EEEEch------H
Confidence 567999999999998872 1 124578999999999999999999987 222 223322 1
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHH-HccCCEEEEEecccCccc-------------ccccC---CCCCCCCC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKI-LSRKKFVLLLDDIWNRVD-------------LEKLG---IPPMNTNG 186 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~-------------~~~~~---~~~~~~~~ 186 (769)
.+.. . .....+.....+.+. -..++.+|+||+++.... ...+. ..+.....
T Consensus 86 ~l~~----~--------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 DLVS----K--------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp HHHT----T--------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred HHhh----c--------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 1110 0 011122222233332 335678999999975311 11110 00111233
Q ss_pred CcEEEEeeccCCccc-cc--cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCC-chhHHHHHHH
Q 046742 187 SSKIVFTTRSAGGCG-LM--EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDG-LPLALITIGR 261 (769)
Q Consensus 187 ~~~iivTtR~~~v~~-~~--~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~ 261 (769)
+..||.||....... .+ +-...+.++..+.++-.++++..+..... ....+..+.+++.+.| .+-.|..+..
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC---VLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC---CCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC---CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 555665666543211 00 22356788999999999999988764331 1124567889999887 4555655553
No 179
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.35 E-value=1.5e-05 Score=81.68 Aligned_cols=179 Identities=11% Similarity=0.032 Sum_probs=103.3
Q ss_pred CCCCCchHHHHHHHHHhcc------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 56 PQTLGLESTFDEVWRCLGE------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
..++|.+..++.+.+.+.. ...+.+.|+|++|+|||++|+.++... ... .+.++++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~---~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SAT---FLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCE---EEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCC---eEEeeHHHHhh--
Confidence 6789999999999888732 235688999999999999999999986 222 23344332110
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHH-HHHccCCEEEEEecccCcccc---------c----ccC---CCCC--CC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIF-KILSRKKFVLLLDDIWNRVDL---------E----KLG---IPPM--NT 184 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~~---------~----~~~---~~~~--~~ 184 (769)
. ... ........+. .....++.+|+||+++....- . .+. ..++ ..
T Consensus 93 ------------~---~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 ------------K---YVG-DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp ------------S---SCS-CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred ------------c---ccc-hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 011 1122222222 223356789999999753110 0 010 0011 11
Q ss_pred CCCcEEEEeeccCCccc-cc--cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchh-HHHHHH
Q 046742 185 NGSSKIVFTTRSAGGCG-LM--EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPL-ALITIG 260 (769)
Q Consensus 185 ~~~~~iivTtR~~~v~~-~~--~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 260 (769)
+.+..||.||...+... .. +-...+.++..+.++..+++...+..... .-..+..+.+++.+.|.+- ++..+.
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 23455666666543211 10 12246788888888888888776643221 1124667889999999875 555554
Q ss_pred H
Q 046742 261 R 261 (769)
Q Consensus 261 ~ 261 (769)
.
T Consensus 234 ~ 234 (297)
T 3b9p_A 234 K 234 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 180
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=4.6e-07 Score=95.73 Aligned_cols=195 Identities=9% Similarity=0.064 Sum_probs=104.4
Q ss_pred CCCCCCchHHHHHHHHHh-ccCCccEEEEEcCCCCcHHHHHHHHHhhccCCC-CC--CcE--------------------
Q 046742 55 IPQTLGLESTFDEVWRCL-GEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTP-NG--FDF-------------------- 110 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L-~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~~--f~~-------------------- 110 (769)
...++|++..++.+.+++ ..+..+.+.|+|+.|+||||+|+.++....... +. ++.
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 92 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPY 92 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSS
T ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccc
Confidence 366899999999999998 665544589999999999999999998541111 10 000
Q ss_pred EEEEEeCccc-cHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc--ccccCCCCCCCCCC
Q 046742 111 VIWVVLSRDL-QIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD--LEKLGIPPMNTNGS 187 (769)
Q Consensus 111 ~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~ 187 (769)
.+.+..+... ......+++++.+..... ..... .+ ..+.+++-++|+|+++.... ...+...+.....+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 93 HLEITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp EEEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred eEEecHhhcCCcchHHHHHHHHHHHHhcc------ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 0111111000 000012222222211000 00000 00 00234677999999976321 11111111111235
Q ss_pred cEEEEeeccCC-cccc-ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHH
Q 046742 188 SKIVFTTRSAG-GCGL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITI 259 (769)
Q Consensus 188 ~~iivTtR~~~-v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 259 (769)
..+|++|.+.. +... ......+++.+++.++..+++.+.+.......+ ..+.++.|++.++|.+..+..+
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHH
Confidence 67777776543 2211 123367899999999999999887643321111 0356788999999988655443
No 181
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.32 E-value=1.5e-06 Score=89.81 Aligned_cols=152 Identities=14% Similarity=0.104 Sum_probs=85.5
Q ss_pred CCCCchHHHHHHHHHhc---------------cCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcccc
Q 046742 57 QTLGLESTFDEVWRCLG---------------EEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQ 121 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~---------------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 121 (769)
.++|.+..++.|.+++. ......+.|+|++|+|||++|+.+++... ........-++.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLH-RLGYVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHH-HTTSSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHH-hcCCcCCCcEEEEcHH--
Confidence 47999999999887663 23445789999999999999998888762 1111111112222211
Q ss_pred HHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCc-----------ccccccCCCCCCCCCCcEE
Q 046742 122 IDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNR-----------VDLEKLGIPPMNTNGSSKI 190 (769)
Q Consensus 122 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~~~~~~~~~~~~i 190 (769)
.+... ............+... +.-+|+||+++.. .....+...+.....+..|
T Consensus 109 ----------~l~~~---~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 172 (309)
T 3syl_A 109 ----------DLVGQ---YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVV 172 (309)
T ss_dssp ----------GTCCS---STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEE
T ss_pred ----------Hhhhh---cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEE
Confidence 01000 0111111222222221 3459999999743 1112221112222345677
Q ss_pred EEeeccC----------CccccccccceEEcCCCCHHHHHHHHHhhhCC
Q 046742 191 VFTTRSA----------GGCGLMEAHRIFKVKCLEHKEAWELFQMKVGR 229 (769)
Q Consensus 191 ivTtR~~----------~v~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~ 229 (769)
|+||... .+.. +....+.+++++.++..+++...+..
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 7777542 2222 12367899999999999999887643
No 182
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.32 E-value=1.3e-05 Score=85.41 Aligned_cols=181 Identities=10% Similarity=0.025 Sum_probs=102.0
Q ss_pred CCCCCchHHHHHHHHHhcc------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 56 PQTLGLESTFDEVWRCLGE------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
..++|++..++.|.+++.. ...+.|.|+|++|+|||++|+.++... .. ..+.++++.-..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhc--
Confidence 5679999999999988821 234678999999999999999999886 22 223333322111
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc--------c-----ccccCCCC---C-CCCC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV--------D-----LEKLGIPP---M-NTNG 186 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~-----~~~~~~~~---~-~~~~ 186 (769)
.. ...........+...-...+.+|+||+++... . ...+...+ . ....
T Consensus 187 ~~---------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 KY---------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred cc---------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 00 00111111112222223456899999997531 0 00110000 0 1122
Q ss_pred CcEEEEeeccCCccc-c-c-cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchh-HHHHHHHH
Q 046742 187 SSKIVFTTRSAGGCG-L-M-EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPL-ALITIGRA 262 (769)
Q Consensus 187 ~~~iivTtR~~~v~~-~-~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~~ 262 (769)
+..||.||...+... . . +-...+.+...+.++..+++...+..... .-..+....+++.+.|..- ++..+..+
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~~~~la~~~~g~~~~~l~~L~~~ 328 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS---PLTQKELAQLARMTDGYSGSDLTALAKD 328 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC---CSCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345555665432211 1 1 12246889999999999999887754331 1224677889999988654 66555433
No 183
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.32 E-value=1.3e-07 Score=100.20 Aligned_cols=131 Identities=22% Similarity=0.223 Sum_probs=97.9
Q ss_pred eeEEEEeeccccccc--ccCC-CCCCCccEEEccCCCCcccchhhh-----cCCCcceEEEecCCCCCcc-----ccccc
Q 046742 392 QVIRRMSLMENQVQS--LSKI-PSCPSLITLFLNNNNLKVITDGFF-----QFMPSLKVLNLSNNQSLKQ-----LPSGI 458 (769)
Q Consensus 392 ~~l~~L~l~~~~~~~--~~~~-~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~L~~~~~~~~-----lp~~i 458 (769)
.+|+.|++++|.+.. +..+ ..+++|+.|++++|.++......+ ...++|++|+|++| .++. ++..+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHH
Confidence 479999999998754 2222 345689999999998875543333 34688999999999 5543 55566
Q ss_pred cCCcCCCEEeccCCCCcc-----cchhhhcCCCCcEEecCCCcCcCccCc----ccccCCcccceeeeecccccc
Q 046742 459 SRLVSLQHLNLSLTNIKE-----LPEELKALVNLKCLNLDYTKSLCRIPR----HLISNFSMLYILRIVDCHYFE 524 (769)
Q Consensus 459 ~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l~~~p~----~~i~~L~~L~~L~l~~~~~~~ 524 (769)
..+++|++|++++|.+.. ++..+...++|+.|++++|. ++.... ..+...++|++|++++|.+..
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 788999999999998873 45667888999999999997 443221 124567899999999987644
No 184
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.31 E-value=1.1e-05 Score=84.80 Aligned_cols=179 Identities=14% Similarity=0.085 Sum_probs=102.6
Q ss_pred CCCCCchHHHHHHHHHhcc------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 56 PQTLGLESTFDEVWRCLGE------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
..++|.+..++.|.+.+.. ...+.|.|+|++|+|||++|+.+++.. ... .+.+..+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHH------
Confidence 6689999999999887721 123458899999999999999999987 222 2233221
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc-------------ccccCCC---CCCCCCC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD-------------LEKLGIP---PMNTNGS 187 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~---~~~~~~~ 187 (769)
++.. .. ...........+...-..++.+|+||+++.... ...+... +.....+
T Consensus 119 ~l~~----~~-------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 DLVS----KW-------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp HHHS----CC----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred HHhh----hh-------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 1111 00 111111122222222235788999999975321 1111100 1112234
Q ss_pred cEEEEeeccCCccc-cc--cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCc-hhHHHHHH
Q 046742 188 SKIVFTTRSAGGCG-LM--EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGL-PLALITIG 260 (769)
Q Consensus 188 ~~iivTtR~~~v~~-~~--~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~ 260 (769)
..||.||...+... .+ +-...+.++..+.++-.+++...+...... ......+.|++.+.|. +-.|..+.
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~---~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV---LTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC---CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 55665665443211 00 233567899999999999998887543311 1245678899999884 54555554
No 185
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.30 E-value=3.1e-06 Score=87.99 Aligned_cols=181 Identities=10% Similarity=0.003 Sum_probs=102.6
Q ss_pred CCCCCCCchHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHH
Q 046742 54 PIPQTLGLESTFDEVWRCLGEEH-VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARK 132 (769)
Q Consensus 54 ~~~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 132 (769)
....++|+++.++.+.+++..+. .+++.+.|++|+|||++|+.+++.. . ...+.++.+.. .. ..+++.+..
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~-~~i~~~~~~ 95 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KI-DFVRGPLTN 95 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CH-HHHHTHHHH
T ss_pred CHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CH-HHHHHHHHH
Confidence 34678999999999999998654 4567788889999999999999987 1 22445554332 11 122221111
Q ss_pred hCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc---cccccCCCCCCCCCCcEEEEeeccCC-cccc-ccccc
Q 046742 133 IGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV---DLEKLGIPPMNTNGSSKIVFTTRSAG-GCGL-MEAHR 207 (769)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~~~~~~~~~~~~~~iivTtR~~~-v~~~-~~~~~ 207 (769)
..... ...+++-++|+||++... ..+.+...+.....+.++|+||.... +... .....
T Consensus 96 ~~~~~-----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 96 FASAA-----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHHBC-----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred HHhhc-----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 10000 012367899999998653 22222111111123567887776543 1111 12235
Q ss_pred eEEcCCCCHHHHHHHH-------HhhhCCCccCCCCCHHHHHHHHHHHcCCchhH-HHHHHH
Q 046742 208 IFKVKCLEHKEAWELF-------QMKVGRETLESHLQIPELAEIVAKECDGLPLA-LITIGR 261 (769)
Q Consensus 208 ~~~l~~l~~~~a~~l~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-i~~~~~ 261 (769)
.+++++++.++-.+++ .+.+.......+ ..+..+.+++.++|.+.. +..+-.
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~gd~R~a~~~L~~ 218 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIA--DMKVVAALVKKNFPDFRKTIGELDS 218 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBS--CHHHHHHHHHHTCSCTTHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7899999988744332 222222111111 127788899999887764 334433
No 186
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.28 E-value=2.5e-06 Score=80.54 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=42.5
Q ss_pred CCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...++||+++++++.+.+.....+.+.|+|++|+|||++|+.+++..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999987767788999999999999999999886
No 187
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.27 E-value=1.1e-05 Score=86.51 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=28.4
Q ss_pred hhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeecc
Q 046742 480 ELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVDC 520 (769)
Q Consensus 480 ~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~ 520 (769)
.+.++.+|+.+.+.++ +..++...+.++.+|+.+.+..+
T Consensus 157 aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT
T ss_pred hhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC
Confidence 3667788888888654 46677777888888888877643
No 188
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.24 E-value=4.1e-06 Score=87.10 Aligned_cols=174 Identities=16% Similarity=0.151 Sum_probs=97.4
Q ss_pred CCCC-Cch--HHHHHHHHHhccC--CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHH
Q 046742 56 PQTL-GLE--STFDEVWRCLGEE--HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIA 130 (769)
Q Consensus 56 ~~~v-Gr~--~~~~~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 130 (769)
+.|| |.+ .....+..++..+ ....+.|+|++|+||||||+.+++..... .. .+++++. ..+...+.
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~-~~~~i~~------~~~~~~~~ 81 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GY-RVIYSSA------DDFAQAMV 81 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TC-CEEEEEH------HHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CC-EEEEEEH------HHHHHHHH
Confidence 5565 533 3345555655544 34678899999999999999999986211 22 2455543 33333333
Q ss_pred HHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc----ccccCCCCC-CCCCCcEEEEeeccCC-----cc
Q 046742 131 RKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD----LEKLGIPPM-NTNGSSKIVFTTRSAG-----GC 200 (769)
Q Consensus 131 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~~~~~-~~~~~~~iivTtR~~~-----v~ 200 (769)
..+.. .. ...+.+.+ .+.-+|++||++.... .+.+...+. ....+..||+||.+.. +.
T Consensus 82 ~~~~~-------~~----~~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 82 EHLKK-------GT----INEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHH-------TC----HHHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHc-------Cc----HHHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 33311 01 11122223 2367999999975421 111111110 0123457888876432 11
Q ss_pred c----cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhH
Q 046742 201 G----LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLA 255 (769)
Q Consensus 201 ~----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 255 (769)
. .......+++++ +.++..+++.+.+..... .-..+..+.+++.+ |..-.
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~---~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL---ELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC---CCCHHHHHHHHHHC-SSHHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhC-CCHHH
Confidence 1 111225689999 999999999888743221 12256778888888 76643
No 189
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.23 E-value=9.8e-06 Score=84.39 Aligned_cols=171 Identities=11% Similarity=0.048 Sum_probs=100.5
Q ss_pred chHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHhhccCCCC-------------------CCcEEEEEEeC---
Q 046742 61 LESTFDEVWRCLGEEH-VGIIGLYGMGEVGKTTLLTRINNKFSNTPN-------------------GFDFVIWVVLS--- 117 (769)
Q Consensus 61 r~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~-------------------~f~~~~wv~~~--- 117 (769)
.++..+.+.+.+..++ .+.+.++|+.|+|||++|+.+++....... +++ ..++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGK 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTC
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccC
Confidence 4566778888887655 457899999999999999999988621110 122 1222221
Q ss_pred ccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeec
Q 046742 118 RDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTR 195 (769)
Q Consensus 118 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR 195 (769)
.....+ ..+++.+.+.... ..+++-++|+|+++... ....+...+.....++.+|++|.
T Consensus 86 ~~~~i~-~ir~l~~~~~~~~------------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~ 146 (334)
T 1a5t_A 86 NTLGVD-AVREVTEKLNEHA------------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATR 146 (334)
T ss_dssp SSBCHH-HHHHHHHHTTSCC------------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEES
T ss_pred CCCCHH-HHHHHHHHHhhcc------------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 111111 1122222221110 12567899999998642 12222111222234567777776
Q ss_pred cCC-cccc-ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHH
Q 046742 196 SAG-GCGL-MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITI 259 (769)
Q Consensus 196 ~~~-v~~~-~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 259 (769)
+.+ +... ......+++.+++.++..+.+.+.... ..+.++.+++.++|.|..+..+
T Consensus 147 ~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~~--------~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 147 EPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTM--------SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCCC--------CHHHHHHHHHHTTTCHHHHHHT
T ss_pred ChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcCC--------CHHHHHHHHHHcCCCHHHHHHH
Confidence 543 3221 123457999999999999999887511 1456788999999999766443
No 190
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=4.3e-06 Score=87.49 Aligned_cols=173 Identities=14% Similarity=0.148 Sum_probs=102.1
Q ss_pred CCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCc-EEEEEEeCccccHHHHHHHHHHHhC
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFD-FVIWVVLSRDLQIDRLQENIARKIG 134 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~ 134 (769)
..++|.+..++.|..++..++.+.+.++|+.|+||||+|+.++.... ...+. .+.-++.+......
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~----------- 91 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGID----------- 91 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSHH-----------
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccHH-----------
Confidence 55689999999999999877655589999999999999999999862 11111 12222222211111
Q ss_pred CCCcccccccHHHHHHHHHHHH------ccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeeccCC-cccc-cc
Q 046742 135 LYDQSWKNKRLEIKAADIFKIL------SRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTRSAG-GCGL-ME 204 (769)
Q Consensus 135 ~~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR~~~-v~~~-~~ 204 (769)
.....+.... .+.+-++|+|+++... ..+.+...+.....++++|++|.... +... ..
T Consensus 92 ------------~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s 159 (340)
T 1sxj_C 92 ------------VVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS 159 (340)
T ss_dssp ------------HHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred ------------HHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh
Confidence 1111111111 2346789999997532 11111111111123556777665432 1111 11
Q ss_pred ccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHH
Q 046742 205 AHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLAL 256 (769)
Q Consensus 205 ~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 256 (769)
....+++.+++.++..+.+.+.+....... ..+..+.+++.++|.+--+
T Consensus 160 R~~~~~~~~l~~~~~~~~l~~~~~~~~~~i---~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 160 QCTRFRFQPLPQEAIERRIANVLVHEKLKL---SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHTTTCCB---CHHHHHHHHHHHTTCHHHH
T ss_pred hceeEeccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 234789999999999998887764322111 2566788999999988643
No 191
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=4.4e-05 Score=79.69 Aligned_cols=170 Identities=16% Similarity=0.128 Sum_probs=100.1
Q ss_pred CCCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 57 QTLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
.+.|-++.+++|.+.+.- ..++-|.++||+|+|||.||+++++.. ...| +.+..+.-.+
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEE---EEEEGGGGSC--
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCc---eEEEhHHhhc--
Confidence 346899999998877631 345678899999999999999999997 2222 3343332110
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc----------c------ccccCCCCC--CCC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV----------D------LEKLGIPPM--NTN 185 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~------~~~~~~~~~--~~~ 185 (769)
.+.......+...+...-...+++|+||+++... + +..+...+. ...
T Consensus 221 ---------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 221 ---------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp ---------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred ---------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 1112222222222223334578999999997531 0 111110011 223
Q ss_pred CCcEEEEeeccCCccc-----cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 186 GSSKIVFTTRSAGGCG-----LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 186 ~~~~iivTtR~~~v~~-----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
.+..||.||...+... ..+-+..+.++..+.++-.++|+..+.......+.+ .+.+++.+.|.-
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 4555666776655422 113456899999999999999987775443222223 466777887754
No 192
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.22 E-value=3.5e-05 Score=83.41 Aligned_cols=181 Identities=14% Similarity=0.107 Sum_probs=103.2
Q ss_pred CCCCCchHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 56 PQTLGLESTFDEVWRCLG------------EEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~------------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
..++|.+..++.|.+.+. ....+.|.|+|++|+|||++|+.+++... + .-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~---~----~~~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN---N----STFFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC---S----SEEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC---C----CCEEEEeHHH---
Confidence 567899999999988773 12346789999999999999999999861 1 1123332221
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc-------------cccccCCCCCC---CCCC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV-------------DLEKLGIPPMN---TNGS 187 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~~~~~~~~---~~~~ 187 (769)
+... ..+. ........ +...-..++.+|+||+++... ....+...+.. ...+
T Consensus 204 -l~~~---~~g~-----~~~~~~~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 204 -LVSK---WLGE-----SEKLVKNL---FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp -----------------CCCTHHHH---HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred -HHhh---hcch-----HHHHHHHH---HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 1110 0111 11111111 112223577899999997541 01112122211 2345
Q ss_pred cEEEEeeccCCcccc--c-cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCc-hhHHHHHHH
Q 046742 188 SKIVFTTRSAGGCGL--M-EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGL-PLALITIGR 261 (769)
Q Consensus 188 ~~iivTtR~~~v~~~--~-~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~~ 261 (769)
..||.||........ . +-...+.++..+.++-.+++...+....... .....+.|++.+.|. +-.|..+..
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 666667655432110 1 2235678888999999999988775433111 245678899999884 445555543
No 193
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.17 E-value=2.6e-05 Score=79.93 Aligned_cols=173 Identities=16% Similarity=0.129 Sum_probs=99.9
Q ss_pred CCCCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccH
Q 046742 56 PQTLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQI 122 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 122 (769)
..++|.++.+++|.+++.. ...+.|.|+|++|+|||++|+.+++.. ... .+.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~---~i~v~------~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN---FISIK------G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCE---EEEEC------H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCC---EEEEE------h
Confidence 5689999999999887742 345678999999999999999999987 222 22232 2
Q ss_pred HHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc----------------ccccCCCCC--CC
Q 046742 123 DRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD----------------LEKLGIPPM--NT 184 (769)
Q Consensus 123 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~~~--~~ 184 (769)
.++.... .+.. .. .....+.......+.+++||+++.... ...+...+. ..
T Consensus 83 ~~l~~~~---~g~~-----~~---~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 PELLTMW---FGES-----EA---NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHH---HTTC-----TT---HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred HHHHhhh---cCch-----HH---HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 2222211 2211 11 112223333345689999999974210 011110010 12
Q ss_pred CCCcEEEEeeccCCccc-c-c---cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhH
Q 046742 185 NGSSKIVFTTRSAGGCG-L-M---EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLA 255 (769)
Q Consensus 185 ~~~~~iivTtR~~~v~~-~-~---~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 255 (769)
..+..||.||...+... . . +-...+.++..+.++-.++++..+.......... .+.+++.+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 23556666776543211 1 1 2335789999999999999988775443222222 34566677777643
No 194
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.17 E-value=1.1e-05 Score=88.02 Aligned_cols=151 Identities=18% Similarity=0.142 Sum_probs=83.7
Q ss_pred CCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCC--CCCC-c-EEEEEEeCccccHHHHHHHHH
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNT--PNGF-D-FVIWVVLSRDLQIDRLQENIA 130 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--~~~f-~-~~~wv~~~~~~~~~~~~~~i~ 130 (769)
.+++|||+.+++.+...+......-+.|+|++|+|||++|+.+++..... .... + .++.++++ .
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------~ 246 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------T 246 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------------c
Confidence 35689999999999999977666677899999999999999999886210 1111 1 12233322 0
Q ss_pred HHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcccccccCCCCCCCCCCcEEEEeeccCCc------cc-cc
Q 046742 131 RKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVDLEKLGIPPMNTNGSSKIVFTTRSAGG------CG-LM 203 (769)
Q Consensus 131 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~iivTtR~~~v------~~-~~ 203 (769)
...+. ......... ...-..++.+|++| ........+...+. . ...++|.+|...+. .. ..
T Consensus 247 ~~~g~-----~e~~~~~~~---~~~~~~~~~iLfiD--~~~~a~~~L~~~L~-~-g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 247 KYRGE-----FEDRLKKVM---DEIRQAGNIILFID--AAIDASNILKPSLA-R-GELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp -----------CTTHHHHH---HHHHTCCCCEEEEC--C--------CCCTT-S-SSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred cccch-----HHHHHHHHH---HHHHhcCCeEEEEe--CchhHHHHHHHhhc-C-CCEEEEecCCHHHHHHHhhcCHHHH
Confidence 00000 111112222 22223567899999 22222222222222 2 23556666554441 11 11
Q ss_pred cccceEEcCCCCHHHHHHHHHhhhCC
Q 046742 204 EAHRIFKVKCLEHKEAWELFQMKVGR 229 (769)
Q Consensus 204 ~~~~~~~l~~l~~~~a~~l~~~~~~~ 229 (769)
+....+.+++.+.++..+++......
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHHHH
Confidence 23346999999999999999877644
No 195
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=0.00013 Score=76.40 Aligned_cols=170 Identities=16% Similarity=0.139 Sum_probs=97.5
Q ss_pred CCCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 57 QTLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
.+.|-++.+++|.+.+.- ...+-|.++|++|+|||.||+++++.. ...| +.+..+.-
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~f---i~v~~s~l---- 252 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATF---LRIVGSEL---- 252 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEE---EEEESGGG----
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCE---EEEEHHHh----
Confidence 336899999888776631 345789999999999999999999997 2222 33332221
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc----------------ccccCCCC--CCCC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD----------------LEKLGIPP--MNTN 185 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~~--~~~~ 185 (769)
.. .+...........+...-...+++|++|+++.... +..+...+ ....
T Consensus 253 ----------~s---k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 253 ----------IQ---KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp ----------CC---SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred ----------hh---ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 00 01112222222222223335689999999874310 00110000 1223
Q ss_pred CCcEEEEeeccCCccc-----cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 186 GSSKIVFTTRSAGGCG-----LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 186 ~~~~iivTtR~~~v~~-----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
.+..||.||...+... ..+-+..+.++..+.++-.++|+..+.......+.+ .+.+++.+.|+-
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 3455666776554422 113345688999999999999988775443222223 456677777654
No 196
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=7.9e-05 Score=79.15 Aligned_cols=170 Identities=16% Similarity=0.181 Sum_probs=99.4
Q ss_pred CCCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 57 QTLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
.+.|-++.+++|.+.+.- ..++-|.++||+|+|||++|+++++.. ... .+.+..+.-.+
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~s-- 253 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVD-- 253 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCC--
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhcc--
Confidence 346899999888777631 345789999999999999999999997 222 23343322110
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc----------------ccccCCCC--CCCC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD----------------LEKLGIPP--MNTN 185 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~~--~~~~ 185 (769)
.+...........+...-...+++|++|+++.... +..+...+ ....
T Consensus 254 ---------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 ---------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp ---------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred ---------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 11222222222223333345789999999974310 00111111 1122
Q ss_pred CCcEEEEeeccCCccc-----cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 186 GSSKIVFTTRSAGGCG-----LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 186 ~~~~iivTtR~~~v~~-----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
.+..||.||...+... ..+-+..+.++..+.++-.++|+..+.......+.+ .+.+++.+.|+-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 3456777776554322 112356788998899998899987765433222223 456777787754
No 197
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=4.7e-05 Score=80.81 Aligned_cols=170 Identities=11% Similarity=0.094 Sum_probs=97.1
Q ss_pred CCCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 57 QTLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
.+.|-++.+++|.+.+.- ..++-|.++||+|+|||.+|+++++.. ... .+.+..+.-.
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~--- 252 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQLV--- 252 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGC---
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhhh---
Confidence 447899999998876521 346689999999999999999999997 222 2333332210
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCc-------c-----c----ccccCCCCC--CCC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNR-------V-----D----LEKLGIPPM--NTN 185 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------~-----~----~~~~~~~~~--~~~ 185 (769)
. .+...........+...-...+++|++|+++.. . . +..+...+. ...
T Consensus 253 -----------~---~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 253 -----------Q---MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp -----------S---SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred -----------h---cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 0 011122222222222223357899999998632 0 0 011111111 122
Q ss_pred CCcEEEEeeccCCccc-----cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 186 GSSKIVFTTRSAGGCG-----LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 186 ~~~~iivTtR~~~v~~-----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
.+..||.||...+... ..+-+..+.++..+.++-.++|+..+.......+.+ .+.+++.+.|+-
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 3455666776654322 123456789999999988888877664332222222 456777787754
No 198
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=0.00013 Score=77.33 Aligned_cols=170 Identities=15% Similarity=0.188 Sum_probs=99.1
Q ss_pred CCCCchHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 57 QTLGLESTFDEVWRCLG-------------EEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
.+.|-++.+++|.+.+. -..++-|.++|++|+|||.+|+++++.. ... .+.+..+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~---fi~vs~s~L~s-- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DAT---FIRVIGSELVQ-- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCC--
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCC---eEEEEhHHhhc--
Confidence 45789999999887652 1356789999999999999999999997 222 23333322100
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc----------------ccccCCCC--CCCC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD----------------LEKLGIPP--MNTN 185 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~~--~~~~ 185 (769)
.+.......+...+...-...+++|++|+++.... +..+...+ ....
T Consensus 282 ---------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 346 (467)
T 4b4t_H 282 ---------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR 346 (467)
T ss_dssp ---------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT
T ss_pred ---------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC
Confidence 11122222222233333345789999999874310 00010001 1122
Q ss_pred CCcEEEEeeccCCccc-----cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 186 GSSKIVFTTRSAGGCG-----LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 186 ~~~~iivTtR~~~v~~-----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
.+..||.||...+... ..+-+..+.++..+.++-.++|+..+.........+ .+.|++.+.|+-
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 3445566666554322 113456789999999999999987775443222222 456777887754
No 199
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.00 E-value=0.00017 Score=77.07 Aligned_cols=99 Identities=14% Similarity=0.209 Sum_probs=45.9
Q ss_pred ccEEEccCCCCcccchhhhcCCCcceEEEecCCC--CCccccc-cccCCcCCCEEeccCCCCcccchh-hhcCCCCcEEe
Q 046742 416 LITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQ--SLKQLPS-GISRLVSLQHLNLSLTNIKELPEE-LKALVNLKCLN 491 (769)
Q Consensus 416 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~--~~~~lp~-~i~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~ 491 (769)
|+.+.+-.+ ++.+....|.++++|+.+.++.+. .++.++. .|..+.+|+.+.+.. .++.++.. +..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-ccceehhhhhhhhccccccc
Confidence 555555432 555555555555566655555431 2333322 344455555444432 23333322 34455555555
Q ss_pred cCCCcCcCccCcccccCCcccceeeee
Q 046742 492 LDYTKSLCRIPRHLISNFSMLYILRIV 518 (769)
Q Consensus 492 l~~~~~l~~~p~~~i~~L~~L~~L~l~ 518 (769)
+..+ +..++...+..+.+|+.+.+.
T Consensus 144 lp~~--~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 144 IPEG--VTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp CCTT--CCEECTTTTTTCTTCCEEECC
T ss_pred ccce--eeeecccceeccccccccccc
Confidence 5432 344444444555555555443
No 200
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.99 E-value=1.2e-05 Score=94.80 Aligned_cols=156 Identities=15% Similarity=0.200 Sum_probs=84.8
Q ss_pred CCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccC--CCCC--CcEEEEEEeCccccHHHHHHHHH
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSN--TPNG--FDFVIWVVLSRDLQIDRLQENIA 130 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~--~~~~--f~~~~wv~~~~~~~~~~~~~~i~ 130 (769)
.+++|||++++.++.+.+.....+.+.|+|++|+|||++|+.+++.... +... -..++.++++.-..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--------- 239 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--------- 239 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---------
Confidence 3568999999999999997766667889999999999999999987621 1111 12344443322100
Q ss_pred HHhCCCCcccccccHHHHHHHHHHHHc--cCCEEEEEecccCcc---------cccccCCCCCCCCCCcEEEEeeccCCc
Q 046742 131 RKIGLYDQSWKNKRLEIKAADIFKILS--RKKFVLLLDDIWNRV---------DLEKLGIPPMNTNGSSKIVFTTRSAGG 199 (769)
Q Consensus 131 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~~~~~~~~~~~~~~iivTtR~~~v 199 (769)
+.. ...+.......+.+.+. +++.+|++|+++... +...+..+.... .+..+|.+|...+.
T Consensus 240 ---g~~----~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~-~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 ---GAK----YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-GELRLIGATTLDEY 311 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-TCCCEEEEECHHHH
T ss_pred ---cCc----cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC-CCeEEEEecCchHH
Confidence 000 11122333333333333 367899999997542 111111011111 23345555443211
Q ss_pred ------cccccccceEEcCCCCHHHHHHHHHhhh
Q 046742 200 ------CGLMEAHRIFKVKCLEHKEAWELFQMKV 227 (769)
Q Consensus 200 ------~~~~~~~~~~~l~~l~~~~a~~l~~~~~ 227 (769)
....+....+.+++++.++..+++....
T Consensus 312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 1111223458999999999999997544
No 201
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.96 E-value=1.2e-05 Score=81.10 Aligned_cols=173 Identities=18% Similarity=0.115 Sum_probs=91.5
Q ss_pred CCCCCCchHHHHHHHHHhcc------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccH
Q 046742 55 IPQTLGLESTFDEVWRCLGE------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQI 122 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 122 (769)
-..++|.++.++++.+.+.. ...+.+.|+|++|+|||++|+.+++.. ...|- .+..+.-.+.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~---~v~~~~~~~~ 83 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---HVPFF---SMGGSSFIEM 83 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH---TCCCC---CCCSCTTTTS
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEE---EechHHHHHh
Confidence 36789999988888776641 123447799999999999999999987 22221 1111110000
Q ss_pred HHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc-----------------cccccCCCCCC--
Q 046742 123 DRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV-----------------DLEKLGIPPMN-- 183 (769)
Q Consensus 123 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------------~~~~~~~~~~~-- 183 (769)
..+.. ..... ..+......++.+|+|||++... .+..+...+..
T Consensus 84 ---------~~~~~-----~~~~~---~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 84 ---------FVGLG-----ASRVR---DLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp ---------CSSSC-----SSSSS---TTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS
T ss_pred ---------hcchH-----HHHHH---HHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc
Confidence 00100 00001 11222223466899999996431 12222222211
Q ss_pred -CCCCcEEEEeeccCCccc--cc---cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchh
Q 046742 184 -TNGSSKIVFTTRSAGGCG--LM---EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPL 254 (769)
Q Consensus 184 -~~~~~~iivTtR~~~v~~--~~---~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 254 (769)
...+..||.||...+... .. +-...+.++..+.++-.+++...+.......... .+.+++.+.|.|-
T Consensus 147 ~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~g~~g 219 (268)
T 2r62_A 147 SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVN----LQEVAKLTAGLAG 219 (268)
T ss_dssp CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCC----TTTTTSSSCSSCH
T ss_pred cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccC----HHHHHHHcCCCCH
Confidence 112345666766554211 11 1234678888999988888887764332111111 2335555666553
No 202
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=0.00034 Score=74.15 Aligned_cols=170 Identities=16% Similarity=0.166 Sum_probs=93.3
Q ss_pred CCCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 57 QTLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
.+.|-++.+++|.+.+.- ...+-|.++||+|+|||++|+++++.. ... .+.+..+.-.+
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~---~~~v~~~~l~~-- 244 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAA---FIRVNGSEFVH-- 244 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCE---EEEEEGGGTCC--
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---eEEEecchhhc--
Confidence 446899999998876631 345679999999999999999999997 222 23343332110
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc----------c------ccccCCCCC--CCC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV----------D------LEKLGIPPM--NTN 185 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~------~~~~~~~~~--~~~ 185 (769)
.+.......+...+...-...++++++|+++... + +..+...+. ...
T Consensus 245 ---------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~ 309 (428)
T 4b4t_K 245 ---------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309 (428)
T ss_dssp ---------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred ---------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC
Confidence 1112222222222333334578999999986320 0 111100010 123
Q ss_pred CCcEEEEeeccCCccc-----cccccceEEcCCC-CHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 186 GSSKIVFTTRSAGGCG-----LMEAHRIFKVKCL-EHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 186 ~~~~iivTtR~~~v~~-----~~~~~~~~~l~~l-~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
.+..||.||...+... ..+-+..++++.+ +.++-.++|+..+.......+.+ .+.+++.+.|+-
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 3556666776654321 1123456788655 45555566766654333222222 456677777654
No 203
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.95 E-value=1.9e-05 Score=80.63 Aligned_cols=147 Identities=14% Similarity=0.090 Sum_probs=89.1
Q ss_pred CchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCC-CCCcEEEEEEeCc-cccHHHHHHHHHHHhCCCC
Q 046742 60 GLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTP-NGFDFVIWVVLSR-DLQIDRLQENIARKIGLYD 137 (769)
Q Consensus 60 Gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 137 (769)
|-++.++.|.+.+..++.+...++|+.|+||||+|+.+++....-. .+.+ ..+++.+. ..+.++ .+++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHHHHhhcc
Confidence 4566788888888777677889999999999999999987631111 2333 34454332 222222 333444443211
Q ss_pred cccccccHHHHHHHHHHHHccCCEEEEEecccCcc--cccccCCCCCCCCCCcEEEEeeccC-CccccccccceEEcCCC
Q 046742 138 QSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV--DLEKLGIPPMNTNGSSKIVFTTRSA-GGCGLMEAHRIFKVKCL 214 (769)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~iivTtR~~-~v~~~~~~~~~~~l~~l 214 (769)
..+++-++|+|+++... ..+.+...+.....++.+|++|.+. .+.....+- .+++.++
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l 139 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVN 139 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECC
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCC
Confidence 12456799999998642 2222221122223456777766543 343333444 8999999
Q ss_pred CHHHHHHHHHhhh
Q 046742 215 EHKEAWELFQMKV 227 (769)
Q Consensus 215 ~~~~a~~l~~~~~ 227 (769)
+.++..+.+.+.+
T Consensus 140 ~~~~i~~~L~~~~ 152 (305)
T 2gno_A 140 VPKEFRDLVKEKI 152 (305)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998876
No 204
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.91 E-value=8.2e-06 Score=73.53 Aligned_cols=45 Identities=20% Similarity=0.174 Sum_probs=36.3
Q ss_pred CCCCchHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 57 QTLGLESTFDEVWRCLGE--EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.++|++..+.++.+.+.. ....-|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999988743 333457799999999999999999876
No 205
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.91 E-value=0.00017 Score=71.91 Aligned_cols=177 Identities=15% Similarity=0.106 Sum_probs=96.8
Q ss_pred CCCCCchHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 56 PQTLGLESTFDEVWRCLG---E---------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
..++|.++.++++.+.+. . ...+-+.|+|++|+||||+|+.+++.. ...| +.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHH--
Confidence 667999988888766542 1 124468899999999999999999987 2222 3333222100
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc----------------ccccCCCCC--CCC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD----------------LEKLGIPPM--NTN 185 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~~~--~~~ 185 (769)
. ............+.+.....+.++++|+++.... +..+...+. ...
T Consensus 84 --------~-------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 --------M-------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp --------S-------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred --------H-------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 0 0111122222333333345678999999853210 000100000 122
Q ss_pred CCcEEEEeeccCCcc-ccc----cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCC-chhHHHHH
Q 046742 186 GSSKIVFTTRSAGGC-GLM----EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDG-LPLALITI 259 (769)
Q Consensus 186 ~~~~iivTtR~~~v~-~~~----~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~ 259 (769)
.+..||.||...+.. ... .-...+.++..+.++-.++++..+......... ....+++.+.| .+--+..+
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~----~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI----DAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc----cHHHHHHHcCCCCHHHHHHH
Confidence 345666666654421 111 123467888888888888887776443211111 23456777777 66544433
No 206
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.90 E-value=6.7e-05 Score=81.75 Aligned_cols=177 Identities=13% Similarity=0.082 Sum_probs=101.6
Q ss_pred CCCCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccH
Q 046742 56 PQTLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQI 122 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 122 (769)
..++|.+..+++|.+++.. ...+.|.|+|++|+|||++|+.+++.. ... .+.++++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~---fv~vn~~~---- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPE---- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSE---EEEEEHHH----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCC---EEEEEchH----
Confidence 3578999999999888742 345678999999999999999999886 222 23443211
Q ss_pred HHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc-------------ccccCCCCC--CCCCC
Q 046742 123 DRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD-------------LEKLGIPPM--NTNGS 187 (769)
Q Consensus 123 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~~~--~~~~~ 187 (769)
+. ..+ ...........+.....+++.+|+||+++.... ...+...+. ....+
T Consensus 274 --l~----~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 274 --IM----SKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp --HH----TSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred --hh----hhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 11 000 112222233334444456788999999953210 011110010 12234
Q ss_pred cEEEEeeccCC-cccc----ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCc-hhHHHHH
Q 046742 188 SKIVFTTRSAG-GCGL----MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGL-PLALITI 259 (769)
Q Consensus 188 ~~iivTtR~~~-v~~~----~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~ 259 (769)
..||.||...+ +... ..-...+.+...+.++-.+++...+.......... ..++++.+.|. +-.+..+
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHHH
Confidence 55665666442 2111 12234689999999999999988875433222222 35566677664 4444444
No 207
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=1.3e-05 Score=73.58 Aligned_cols=38 Identities=5% Similarity=0.043 Sum_probs=21.6
Q ss_pred CCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCC
Q 046742 414 PSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSL 451 (769)
Q Consensus 414 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 451 (769)
-.|+.|++++|.++...-..+..+++|++|+|++|..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~I 98 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYI 98 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCcc
Confidence 35666666666655443333555666666666666433
No 208
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.88 E-value=7.7e-05 Score=86.86 Aligned_cols=151 Identities=17% Similarity=0.130 Sum_probs=84.4
Q ss_pred CCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCC--CCC-c-EEEEEEeCccccHHHHHHHHH
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTP--NGF-D-FVIWVVLSRDLQIDRLQENIA 130 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~--~~f-~-~~~wv~~~~~~~~~~~~~~i~ 130 (769)
.+.+|||+++++++...|......-+.++|++|+|||++|+.+++...... ... . ..+.++.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------------- 244 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------------- 244 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--------------
Confidence 356899999999999999776666788999999999999999998862111 111 1 1222222
Q ss_pred HHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcccccccCCCCCCCCCCcEEEEeeccCCc------cc-cc
Q 046742 131 RKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVDLEKLGIPPMNTNGSSKIVFTTRSAGG------CG-LM 203 (769)
Q Consensus 131 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~iivTtR~~~v------~~-~~ 203 (769)
+.............. +......++.+|++|. .......+...+ . ....++|.||...+. -. ..
T Consensus 245 ---g~~~~G~~e~~l~~~---~~~~~~~~~~iLfiD~--~~~~~~~L~~~l-~-~~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 245 ---GTKYRGEFEDRLKKV---MDEIRQAGNIILFIDA--AIDASNILKPSL-A-RGELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp -----------CTTHHHH---HHHHHTCCCCEEEECC----------CCCT-T-SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred ---cccccchHHHHHHHH---HHHHHhcCCEEEEEcC--chhHHHHHHHHH-h-cCCEEEEeCCChHHHHHHhhccHHHH
Confidence 000000011112222 2222335778999992 221222222222 2 223566666655441 11 11
Q ss_pred cccceEEcCCCCHHHHHHHHHhhhCC
Q 046742 204 EAHRIFKVKCLEHKEAWELFQMKVGR 229 (769)
Q Consensus 204 ~~~~~~~l~~l~~~~a~~l~~~~~~~ 229 (769)
+....+.++..+.++..+++......
T Consensus 315 rRf~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 315 RRFQPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 12356999999999999999876544
No 209
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.86 E-value=1.2e-05 Score=84.25 Aligned_cols=20 Identities=20% Similarity=0.011 Sum_probs=10.4
Q ss_pred eEEcCCCC-HHHHHHHHHhhh
Q 046742 208 IFKVKCLE-HKEAWELFQMKV 227 (769)
Q Consensus 208 ~~~l~~l~-~~~a~~l~~~~~ 227 (769)
..+.+.+. .++|...+.+..
T Consensus 37 ~~~~~~f~~~~~a~~~~~~l~ 57 (362)
T 2ra8_A 37 QTQVKNFSSAGEAEKAAGKLI 57 (362)
T ss_dssp EEEEEECSSHHHHHHHHHHHH
T ss_pred eEEeeeCCCHHHHHHHHHHHH
Confidence 34444444 666666665543
No 210
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.83 E-value=4.2e-06 Score=83.10 Aligned_cols=59 Identities=37% Similarity=0.415 Sum_probs=28.3
Q ss_pred CCCcceEEEecCCCCCcc---ccccccCCcCCCEEeccCCCCcccchhhhcCC--CCcEEecCCCc
Q 046742 436 FMPSLKVLNLSNNQSLKQ---LPSGISRLVSLQHLNLSLTNIKELPEELKALV--NLKCLNLDYTK 496 (769)
Q Consensus 436 ~l~~L~~L~L~~~~~~~~---lp~~i~~l~~L~~L~l~~~~l~~lp~~~~~l~--~L~~L~l~~~~ 496 (769)
.+++|++|+|++| .+.. +|..+..+++|++|+|++|+++.+ ..+..+. +|+.|++++|+
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc
Confidence 3555555555555 2222 233444555555555555555544 2233333 55555555554
No 211
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.82 E-value=1.3e-05 Score=75.53 Aligned_cols=110 Identities=20% Similarity=0.171 Sum_probs=64.0
Q ss_pred CCCCCCccEEEccCC-CCcccc----hhhhcCCCcceEEEecCCCCCcc-----ccccccCCcCCCEEeccCCCCcc---
Q 046742 410 IPSCPSLITLFLNNN-NLKVIT----DGFFQFMPSLKVLNLSNNQSLKQ-----LPSGISRLVSLQHLNLSLTNIKE--- 476 (769)
Q Consensus 410 ~~~~~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~L~~~~~~~~-----lp~~i~~l~~L~~L~l~~~~l~~--- 476 (769)
+...+.|++|++++| .+.... ...+...++|++|+|++| .++. +...+....+|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 355677777777777 664321 222455677777777777 3332 33444555677777777777663
Q ss_pred --cchhhhcCCCCcEEec--CCCcCcCc-----cCcccccCCcccceeeeecccc
Q 046742 477 --LPEELKALVNLKCLNL--DYTKSLCR-----IPRHLISNFSMLYILRIVDCHY 522 (769)
Q Consensus 477 --lp~~~~~l~~L~~L~l--~~~~~l~~-----~p~~~i~~L~~L~~L~l~~~~~ 522 (769)
+...+...++|++|++ ++|. ++. +.. .+...++|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHH-HHHhCCCcCEEeccCCCC
Confidence 4455666667777777 5554 222 111 134445666666665543
No 212
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.80 E-value=0.00027 Score=76.31 Aligned_cols=171 Identities=14% Similarity=0.125 Sum_probs=97.5
Q ss_pred CCCCCchHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 56 PQTLGLESTFDEVWRCLG---E---------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
..++|.++.++++.+.+. . .-.+-|.|+|++|+|||+||+.++... ...| +.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 567899998888776652 1 123458899999999999999999987 2222 33333221110
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc----------------ccccCCCCC--CCC
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD----------------LEKLGIPPM--NTN 185 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~~~--~~~ 185 (769)
............+.+.....+.+|+||+++.... +..+...+. ...
T Consensus 89 ----------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ----------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ----------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0111122223334444456789999999965310 111110010 112
Q ss_pred CCcEEEEeeccCCccc-c-c---cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 186 GSSKIVFTTRSAGGCG-L-M---EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 186 ~~~~iivTtR~~~v~~-~-~---~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
.+..||.||...+... . . +-...+.++..+.++-.++++..+.......... ...+++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 3556666666554322 1 1 2234788898898888888877665433222212 445788888877
No 213
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.80 E-value=1.9e-05 Score=72.60 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=62.9
Q ss_pred CcceEEEecCCCCCccccccccCCcCCCEEeccCC-CCccc-chhhhcC----CCCcEEecCCCcCcCccCcccccCCcc
Q 046742 438 PSLKVLNLSNNQSLKQLPSGISRLVSLQHLNLSLT-NIKEL-PEELKAL----VNLKCLNLDYTKSLCRIPRHLISNFSM 511 (769)
Q Consensus 438 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~-~l~~l-p~~~~~l----~~L~~L~l~~~~~l~~~p~~~i~~L~~ 511 (769)
..|+.||+++|.....--..+..+++|+.|+|++| .++.- -..+..+ ++|++|++++|..+++-.-..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 46899999998533333455778899999999998 46631 1335553 479999999997676544444778899
Q ss_pred cceeeeeccccccc
Q 046742 512 LYILRIVDCHYFEE 525 (769)
Q Consensus 512 L~~L~l~~~~~~~~ 525 (769)
|++|++++|..++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 99999999876554
No 214
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.79 E-value=0.00015 Score=84.67 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=90.8
Q ss_pred CCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCC--CC-CCcEEEE-EEeCccccHHHHHHHHH
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNT--PN-GFDFVIW-VVLSRDLQIDRLQENIA 130 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--~~-~f~~~~w-v~~~~~~~~~~~~~~i~ 130 (769)
...++||+.+++++.+.|......-+.|+|++|+|||++|+.+++..... .. .....+| ++.+.-
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l----------- 253 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----------- 253 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-----------
Confidence 35679999999999999987666778899999999999999999876210 00 0122222 211110
Q ss_pred HHhCCCCcccccccHHHHHHHHHHHHc-cCCEEEEEecccCcc----------cccccCCCCCCCCCCcEEEEeeccCCc
Q 046742 131 RKIGLYDQSWKNKRLEIKAADIFKILS-RKKFVLLLDDIWNRV----------DLEKLGIPPMNTNGSSKIVFTTRSAGG 199 (769)
Q Consensus 131 ~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~----------~~~~~~~~~~~~~~~~~iivTtR~~~v 199 (769)
.. .. . .....+.....+.+.+. .++.+|++||++... +...+..++... .+..+|.+|...+.
T Consensus 254 --~~-~~-~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~~~~ 327 (758)
T 1r6b_X 254 --LA-GT-K-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEF 327 (758)
T ss_dssp ---C-CC-C-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECHHHH
T ss_pred --hc-cc-c-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCchHH
Confidence 00 00 0 12233444444444444 357899999997541 111111122222 24456666553221
Q ss_pred -------cccccccceEEcCCCCHHHHHHHHHhhh
Q 046742 200 -------CGLMEAHRIFKVKCLEHKEAWELFQMKV 227 (769)
Q Consensus 200 -------~~~~~~~~~~~l~~l~~~~a~~l~~~~~ 227 (769)
.........+.+++.+.++..+++....
T Consensus 328 ~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 0011223468999999999999987654
No 215
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.74 E-value=0.00013 Score=79.29 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=37.0
Q ss_pred CCCCCchHHHHHHHHHh---ccC--CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCL---GEE--HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L---~~~--~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++|.++.++.+..++ ..+ ..+.+.++|++|+|||++|+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 67899999988765554 222 23578899999999999999999987
No 216
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.73 E-value=1.1e-05 Score=84.44 Aligned_cols=13 Identities=31% Similarity=0.347 Sum_probs=6.0
Q ss_pred CCCCcEEecCCCc
Q 046742 484 LVNLKCLNLDYTK 496 (769)
Q Consensus 484 l~~L~~L~l~~~~ 496 (769)
+++|++|++.+|.
T Consensus 251 ~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 251 FPNLKWLGIVDAE 263 (362)
T ss_dssp CTTCCEEEEESCT
T ss_pred CCCcCEEeCCCCC
Confidence 3444444444443
No 217
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.72 E-value=0.00013 Score=74.91 Aligned_cols=46 Identities=22% Similarity=0.177 Sum_probs=38.8
Q ss_pred CCCCCchHHHHHHHHHhcc--------------CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGE--------------EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~--------------~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++|+++.++.+...+.. .....+.|+|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999887753 234568899999999999999999987
No 218
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.69 E-value=0.0036 Score=64.80 Aligned_cols=193 Identities=21% Similarity=0.178 Sum_probs=103.1
Q ss_pred CCCCCCCchHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHH
Q 046742 54 PIPQTLGLESTFDEVWRCLGE-----EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQEN 128 (769)
Q Consensus 54 ~~~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 128 (769)
....++|.+..++.+...+.. .....+.|+|+.|+||||||+.++... ...|. .....-.....+
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~---~~sg~~~~~~~~---- 92 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIH---VTSGPVLVKQGD---- 92 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEE---EEETTTCCSHHH----
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE---EEechHhcCHHH----
Confidence 346679999888888777643 234678999999999999999999987 22221 111111101111
Q ss_pred HHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc--ccc-------ccCCCCC--CC---------CCCc
Q 046742 129 IARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV--DLE-------KLGIPPM--NT---------NGSS 188 (769)
Q Consensus 129 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~-------~~~~~~~--~~---------~~~~ 188 (769)
. . .+...+ .++-++++|+++... ..+ .....+. .. -...
T Consensus 93 ----------------l---~-~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 93 ----------------M---A-AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp ----------------H---H-HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCC
T ss_pred ----------------H---H-HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 1 0 111111 233466778775421 111 0000000 00 0112
Q ss_pred EEE-EeeccCCccccc--cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHHH---
Q 046742 189 KIV-FTTRSAGGCGLM--EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGRA--- 262 (769)
Q Consensus 189 ~ii-vTtR~~~v~~~~--~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~--- 262 (769)
.++ .|++...+...+ +..-.+.+++.+.++..+++.+.+..... .-..+.+..|++.+.|.|-.+..+...
T Consensus 152 ~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRLTKRVRD 228 (334)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 233 344433331111 12235789999999999999887643221 122577899999999999765443322
Q ss_pred ---hcCC--CChhHHHHHHHHHH
Q 046742 263 ---MAFK--KTPQEWKDAIQVLR 280 (769)
Q Consensus 263 ---l~~~--~~~~~w~~~l~~l~ 280 (769)
.... -+.+.-+.+++.+.
T Consensus 229 ~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 229 MLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHHcCCCCcCHHHHHHHHHHhC
Confidence 1221 24455555555543
No 219
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.69 E-value=0.00012 Score=70.13 Aligned_cols=59 Identities=22% Similarity=0.120 Sum_probs=39.0
Q ss_pred CCCCCCch----HHHHHHHHHhccC----CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEe
Q 046742 55 IPQTLGLE----STFDEVWRCLGEE----HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVL 116 (769)
Q Consensus 55 ~~~~vGr~----~~~~~l~~~L~~~----~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 116 (769)
-..|++.+ ..++.+.+++... ....+.|+|++|+|||+||+.+++... .....++|+++
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~ 90 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYV 90 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEH
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEh
Confidence 35666544 3445555666432 126889999999999999999999873 22234566643
No 220
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.65 E-value=7.1e-05 Score=70.45 Aligned_cols=119 Identities=18% Similarity=0.134 Sum_probs=87.7
Q ss_pred hhhhcCCCcceEEEecCC-CCCc----cccccccCCcCCCEEeccCCCCcc-----cchhhhcCCCCcEEecCCCcCcCc
Q 046742 431 DGFFQFMPSLKVLNLSNN-QSLK----QLPSGISRLVSLQHLNLSLTNIKE-----LPEELKALVNLKCLNLDYTKSLCR 500 (769)
Q Consensus 431 ~~~~~~l~~L~~L~L~~~-~~~~----~lp~~i~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l~~ 500 (769)
...+...+.|++|+|++| .... .+...+....+|++|+|++|.+.. +...+...++|++|++++|. ++.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCH
Confidence 344778899999999998 4332 245567778999999999999873 55667778899999999997 443
Q ss_pred -----cCcccccCCcccceeee--eccccccccchhhhHHHHhhcCcCCcEEEEEeccch
Q 046742 501 -----IPRHLISNFSMLYILRI--VDCHYFEEVENCEVLMEEVLLMENLNVLGINLTSSH 553 (769)
Q Consensus 501 -----~p~~~i~~L~~L~~L~l--~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 553 (769)
+... +...++|++|++ ++|.+... ......+.+...+.|+.|+++.+...
T Consensus 108 ~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~--g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEA-LQSNTSLIELRIDNQSQPLGNN--VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHG-GGGCSSCCEEECCCCSSCCCHH--HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHH-HHhCCCceEEEecCCCCCCCHH--HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2333 677889999999 76765433 12233456677789999999877654
No 221
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.61 E-value=8.3e-05 Score=73.74 Aligned_cols=78 Identities=31% Similarity=0.415 Sum_probs=52.6
Q ss_pred CCCCccEEEccCCCCcccch--hhhcCCCcceEEEecCCCCCccccccccCCc--CCCEEeccCCCCc-ccc-------h
Q 046742 412 SCPSLITLFLNNNNLKVITD--GFFQFMPSLKVLNLSNNQSLKQLPSGISRLV--SLQHLNLSLTNIK-ELP-------E 479 (769)
Q Consensus 412 ~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~--~L~~L~l~~~~l~-~lp-------~ 479 (769)
++++|++|+|++|.++.++. ..+..+++|++|+|++| .+..+ ..+..+. +|++|++++|.+. .+| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 35567777777777666542 34567888888888888 55554 2344444 8888888888876 344 2
Q ss_pred hhhcCCCCcEEe
Q 046742 480 ELKALVNLKCLN 491 (769)
Q Consensus 480 ~~~~l~~L~~L~ 491 (769)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 367788888886
No 222
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.55 E-value=0.00013 Score=68.29 Aligned_cols=46 Identities=15% Similarity=0.056 Sum_probs=33.5
Q ss_pred CCCCC----chHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLG----LESTFDEVWRCLGE---EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vG----r~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+.|++ +++.++.+.+++.. .....++|+|+.|+||||||+.+++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 10 DTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp SSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44554 44555555555543 234689999999999999999999886
No 223
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.49 E-value=0.00016 Score=74.41 Aligned_cols=60 Identities=17% Similarity=0.269 Sum_probs=44.1
Q ss_pred CCCCCchHHHHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc
Q 046742 56 PQTLGLESTFDEVWRCLGEE---------HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR 118 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 118 (769)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+++... ..-...+.++++.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTE 85 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEEGGG
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEeeccc
Confidence 45789999999998888542 134789999999999999999999862 2122345556554
No 224
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.48 E-value=0.00068 Score=77.56 Aligned_cols=170 Identities=12% Similarity=0.099 Sum_probs=97.6
Q ss_pred CCCCchHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 57 QTLGLESTFDEVWRCLG----E---------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
.+.|-++.+++|.+++. . ..++-|.++|++|+|||+||+.+++.. ..+ .+.|+.+.
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~~----- 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPE----- 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHHH-----
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhHH-----
Confidence 34688888888877652 1 245679999999999999999999987 222 34443221
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCcc--------c-----ccccCCCCC--CCCCCc
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRV--------D-----LEKLGIPPM--NTNGSS 188 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~-----~~~~~~~~~--~~~~~~ 188 (769)
+. +. +.......+...+.+..+..+.+|+||+++... + ...+...+. ....+.
T Consensus 274 -l~-------sk----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 274 -IM-------SK----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp -HH-------SS----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred -hh-------cc----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 11 10 122223333333444445678999999997531 0 011111110 112234
Q ss_pred EEEEeeccCCcc-ccc----cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 189 KIVFTTRSAGGC-GLM----EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 189 ~iivTtR~~~v~-~~~----~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
.||.||...+.. ..+ +-...++++..+.++-.++|+..........+.+ ...+++.+.|.-
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 455555544321 111 2345789999999999999987765433222222 456777787764
No 225
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.42 E-value=0.0017 Score=69.15 Aligned_cols=103 Identities=17% Similarity=0.245 Sum_probs=49.6
Q ss_pred CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCcccc-ccccCCcCCCEEeccCCCCcccchhhhcCCCCc
Q 046742 410 IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLP-SGISRLVSLQHLNLSLTNIKELPEELKALVNLK 488 (769)
Q Consensus 410 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~ 488 (769)
+.+|.+|+.+.+..+ +..++...|..+.+|+.+++..+ ++.++ ..+.++..|+.+.+..+. ..+........+|+
T Consensus 158 F~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~-~~i~~~~~~~~~l~ 233 (394)
T 4fs7_A 158 FATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSL-YYLGDFALSKTGVK 233 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTC-CEECTTTTTTCCCC
T ss_pred hcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCc-eEeehhhcccCCCc
Confidence 455566666665433 34455555566666666665544 33332 234555555555444331 12222223334555
Q ss_pred EEecCCCcCcCccCcccccCCcccceeeee
Q 046742 489 CLNLDYTKSLCRIPRHLISNFSMLYILRIV 518 (769)
Q Consensus 489 ~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~ 518 (769)
.+.+... ...++...+..+.+|+.+.+.
T Consensus 234 ~i~ip~~--~~~i~~~~f~~~~~l~~~~~~ 261 (394)
T 4fs7_A 234 NIIIPDS--FTELGKSVFYGCTDLESISIQ 261 (394)
T ss_dssp EEEECTT--CCEECSSTTTTCSSCCEEEEC
T ss_pred eEEECCC--ceecccccccccccceeEEcC
Confidence 5555433 344444445555555555554
No 226
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.37 E-value=0.0024 Score=63.94 Aligned_cols=149 Identities=14% Similarity=0.026 Sum_probs=82.8
Q ss_pred CCCCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccH
Q 046742 56 PQTLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQI 122 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 122 (769)
..+.|-++.+++|.+.+.. .-.+-+.|+|++|+||||||+.++... . . ..+.+....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~-~--~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES-G--L---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT-T--C---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc-C--C---CEEEEEcHHHHhh
Confidence 5567888888888765421 122348999999999999999999986 2 2 2344543221100
Q ss_pred HHHHHHHHHHhCCCCcccccccHHHHHHHHHHHH-ccCCEEEEEecccCccc------cc-------ccCCCCC--CCCC
Q 046742 123 DRLQENIARKIGLYDQSWKNKRLEIKAADIFKIL-SRKKFVLLLDDIWNRVD------LE-------KLGIPPM--NTNG 186 (769)
Q Consensus 123 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~------~~-------~~~~~~~--~~~~ 186 (769)
........+..+.+.. ...+.++++|+++.... .. .+...+. ....
T Consensus 84 ------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 84 ------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred ------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 0011112222333332 34678999999974210 00 0000011 1122
Q ss_pred CcEEEEeeccCCcccc-----ccccceEEcCCCCHHHHHHHHHhhhC
Q 046742 187 SSKIVFTTRSAGGCGL-----MEAHRIFKVKCLEHKEAWELFQMKVG 228 (769)
Q Consensus 187 ~~~iivTtR~~~v~~~-----~~~~~~~~l~~l~~~~a~~l~~~~~~ 228 (769)
..-++.+|...++... .+-...+.++..+.++-.++++....
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 3445556666655321 13346788999999999999987663
No 227
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.37 E-value=0.0015 Score=64.88 Aligned_cols=170 Identities=14% Similarity=0.124 Sum_probs=89.1
Q ss_pred CCCCCchHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 56 PQTLGLESTFDEVWRCLG---E---------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
..++|.++.+.++.+... . .-.+-+.|+|++|+||||||+.++... ... .+.+.. .
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~---~~~---~i~~~~------~ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RVP---FITASG------S 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT---TCC---EEEEEH------H
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCC---EEEeeH------H
Confidence 567898877777655442 1 112348999999999999999999987 222 233321 1
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHc-cCCEEEEEecccCccc----------------ccccCCCCCC--C
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILS-RKKFVLLLDDIWNRVD----------------LEKLGIPPMN--T 184 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~----------------~~~~~~~~~~--~ 184 (769)
++. . .. .. ........+.+... ....++++||++.... ...+...+.. .
T Consensus 84 ~~~----~-~~------~~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 DFV----E-MF------VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp HHH----H-SC------TT-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred HHH----H-HH------hh-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 111 1 00 00 11112223333332 3568999999953210 1111111111 1
Q ss_pred CCCcEEEEeeccCCccc-----cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 185 NGSSKIVFTTRSAGGCG-----LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 185 ~~~~~iivTtR~~~v~~-----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
.....++.||...++.. ...-...+.++..+.++-.++++..+.......+.. ...+++.+.|.-
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 12233444555554422 112345788999999888888877653322111111 345677777654
No 228
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.36 E-value=0.0077 Score=63.62 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=60.1
Q ss_pred eeEEEEeecccccccccC--CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccccccCCcCCCEEec
Q 046742 392 QVIRRMSLMENQVQSLSK--IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPSGISRLVSLQHLNL 469 (769)
Q Consensus 392 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 469 (769)
.+++.+.+. ..++.++. +.+|.+|+.+.+..+ ++.+....|..+ .|..+.+..+ ++.++...-...+|+.+.+
T Consensus 46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDLDDFEF 120 (379)
T ss_dssp GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCCSEEEC
T ss_pred cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCCcccccC
Confidence 345555543 23444433 566677777776533 666666666665 4555555443 4444433222235666666
Q ss_pred cCCCCcccchhhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeec
Q 046742 470 SLTNIKELPEELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVD 519 (769)
Q Consensus 470 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 519 (769)
..+ +..+......-.+|....+..+ +..+....+..+.+++.+.+..
T Consensus 121 p~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 121 PGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp CTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECT
T ss_pred CCc-cccccccccccceeeeeeccce--eeccccchhccccccccccccc
Confidence 543 3333333222234555554433 4445554456666666665543
No 229
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.35 E-value=0.0015 Score=66.27 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.++.+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678899999999999999999998
No 230
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.35 E-value=0.0013 Score=66.26 Aligned_cols=170 Identities=15% Similarity=0.104 Sum_probs=90.5
Q ss_pred CCCCCchHHHHHHHHHhcc------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 56 PQTLGLESTFDEVWRCLGE------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
..++|.++.++++.+.... .-.+-+.|+|+.|+||||||+.++... .. ..+.+...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~---~~---~~i~~~~~------ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGS------ 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT---TC---CEEEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc---CC---CEEEecHH------
Confidence 5678998887777655421 112248999999999999999999987 22 22333221
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHH-ccCCEEEEEecccCcc----------------cccccCCCCCCC--
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKIL-SRKKFVLLLDDIWNRV----------------DLEKLGIPPMNT-- 184 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~~~~~~~~~-- 184 (769)
++. ... .. ........+.+.. ...+.++++||++... .+..+...+...
T Consensus 108 ~~~----~~~-------~~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 DFV----EMF-------VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp HHH----HST-------TT-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred HHH----HHH-------hh-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 111 100 00 0111122233332 2456899999985320 011111111111
Q ss_pred CCCcEEEEeeccCCcccc-----ccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 185 NGSSKIVFTTRSAGGCGL-----MEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 185 ~~~~~iivTtR~~~v~~~-----~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
.....++.||...++... ..-...+.++..+.++-.+++...+.......+. ....+++.+.|..
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~----~~~~la~~~~G~~ 245 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV----DLALLAKRTPGFV 245 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHTCTTCC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc----CHHHHHHHcCCCC
Confidence 122344446665554321 1234578999999998888888766432211111 2345677777755
No 231
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.29 E-value=0.0021 Score=71.14 Aligned_cols=156 Identities=17% Similarity=0.151 Sum_probs=77.5
Q ss_pred CCCCchHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHH
Q 046742 57 QTLGLESTFDEVWRCLG------EEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIA 130 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 130 (769)
..+|.++....+.+.+. .....++.++|++|+||||||+.++... ...| .-+.++...+...+.....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l---~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL---GRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH---TCEE---EEECCCC------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc---CCCe---EEEEecccchhhhhhhHHH
Confidence 35788888777765542 1245589999999999999999999987 2222 2223333222222221111
Q ss_pred HHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc------ccccCCCCCC--------C-------CCCcE
Q 046742 131 RKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD------LEKLGIPPMN--------T-------NGSSK 189 (769)
Q Consensus 131 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~~~~~~~~--------~-------~~~~~ 189 (769)
...+. ........+ .......-+++||+++.... ...+...+.. . ..+..
T Consensus 156 ~~ig~--------~~~~~~~~~-~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~ 226 (543)
T 3m6a_A 156 TYVGA--------MPGRIIQGM-KKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVL 226 (543)
T ss_dssp ----------------CHHHHH-HTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCE
T ss_pred HHhcc--------CchHHHHHH-HHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceE
Confidence 11111 011111111 12222344888999975311 1111111110 0 13456
Q ss_pred EEEeeccCCccc--cccccceEEcCCCCHHHHHHHHHhhh
Q 046742 190 IVFTTRSAGGCG--LMEAHRIFKVKCLEHKEAWELFQMKV 227 (769)
Q Consensus 190 iivTtR~~~v~~--~~~~~~~~~l~~l~~~~a~~l~~~~~ 227 (769)
+|.||....... ..+....+.+.+++.++-.+++.+..
T Consensus 227 iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 227 FIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred EEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 666666543211 11223568999999999888887654
No 232
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.24 E-value=0.00013 Score=85.04 Aligned_cols=145 Identities=17% Similarity=0.191 Sum_probs=80.6
Q ss_pred CCCCCchHHHHHHHHHhcc-------C--CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHH
Q 046742 56 PQTLGLESTFDEVWRCLGE-------E--HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQ 126 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~-------~--~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 126 (769)
..++|.+..++.+.+.+.. . ....+.++|++|+|||++|+.+++... ..-...+-++++.......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~~~~~~~-- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSEYMEKHS-- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGGGCSSCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechhcccccc--
Confidence 4578999999998888743 1 122689999999999999999999862 2122345555544321100
Q ss_pred HHHHHHhCCCCcccccccHHHHHHHHHHHHc-cCCEEEEEecccCccc---------ccccCCCC----CCCCCCcEEEE
Q 046742 127 ENIARKIGLYDQSWKNKRLEIKAADIFKILS-RKKFVLLLDDIWNRVD---------LEKLGIPP----MNTNGSSKIVF 192 (769)
Q Consensus 127 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~---------~~~~~~~~----~~~~~~~~iiv 192 (769)
.. ...+.+.++ ...-+|+||+++.... ++.-.... .....+.+||+
T Consensus 566 ----------------~~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 625 (758)
T 3pxi_A 566 ----------------TS----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIM 625 (758)
T ss_dssp ----------------CC-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEE
T ss_pred ----------------cc----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEE
Confidence 00 001111222 2334899999975321 11100000 01123568888
Q ss_pred eeccCC-----------------ccccccccceEEcCCCCHHHHHHHHHhhh
Q 046742 193 TTRSAG-----------------GCGLMEAHRIFKVKCLEHKEAWELFQMKV 227 (769)
Q Consensus 193 TtR~~~-----------------v~~~~~~~~~~~l~~l~~~~a~~l~~~~~ 227 (769)
||.... +... -...+.+.+++.++..+++...+
T Consensus 626 ttn~~~~~~~~~~~~~~~~f~p~l~~R--l~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 626 TSNVGASEKDKVMGELKRAFRPEFINR--IDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp EESSSTTCCHHHHHHHHHHSCHHHHTT--SSEEEECC--CHHHHHHHHHHHH
T ss_pred eCCCChhhHHHHHHHHHhhCCHHHHhh--CCeEEecCCCCHHHHHHHHHHHH
Confidence 887321 1111 12478899999988888876543
No 233
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.21 E-value=0.0011 Score=76.95 Aligned_cols=170 Identities=14% Similarity=0.066 Sum_probs=93.6
Q ss_pred CCCCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccH
Q 046742 56 PQTLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQI 122 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 122 (769)
..++|.++.+++|.+++.. .....|.|+|++|+||||||+.++... ...| +.++...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGPE---- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEchH----
Confidence 4468999999999888742 234578999999999999999999886 2222 3333211
Q ss_pred HHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc----------------ccccCCCCCCCCC
Q 046742 123 DRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD----------------LEKLGIPPMNTNG 186 (769)
Q Consensus 123 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~~~~~~~ 186 (769)
+.... ...........+.+.....+.++++|+++.... +..+...+. ...
T Consensus 274 ----------l~~~~---~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~ 339 (806)
T 1ypw_A 274 ----------IMSKL---AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRA 339 (806)
T ss_dssp ----------HSSSS---TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTS
T ss_pred ----------hhhhh---hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccc
Confidence 10000 111122223333344445788999999953210 101101111 112
Q ss_pred CcEEEEeeccCC-ccccc----cccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 187 SSKIVFTTRSAG-GCGLM----EAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 187 ~~~iivTtR~~~-v~~~~----~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
+..+|.||...+ +-... .-...+.+...+.++-.+++...+.......... ...+++.+.|.-
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~----l~~la~~t~g~~ 407 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCC----THHHHHSCSSCC
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccch----hHHHHHhhcCcc
Confidence 345555555432 21111 2234578888899999999987664433222222 334555555543
No 234
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.19 E-value=0.00027 Score=63.18 Aligned_cols=45 Identities=16% Similarity=0.108 Sum_probs=34.9
Q ss_pred CCCCchHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 57 QTLGLESTFDEVWRCLGE--EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.++|++..+.++.+.+.. ....-|.|+|++|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 568999999999888753 333457799999999999999998875
No 235
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.18 E-value=0.0033 Score=68.26 Aligned_cols=167 Identities=15% Similarity=0.133 Sum_probs=91.7
Q ss_pred CCCCCchHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHH
Q 046742 56 PQTLGLESTFDEVWRCLG---E---------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQID 123 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 123 (769)
..++|.++.+.++.+... . .-.+-|.|+|++|+|||+||+.++... ... .+.++.+.-...
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~~---~i~i~g~~~~~~- 103 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RVP---FITASGSDFVEM- 103 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCC---EEEEEGGGGTSS-
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEehhHHHHh-
Confidence 678999988888766542 1 113358999999999999999999987 222 344443321100
Q ss_pred HHHHHHHHHhCCCCcccccccHHHHHHHHHHHHc----cCCEEEEEecccCccc----------------ccccCCCCC-
Q 046742 124 RLQENIARKIGLYDQSWKNKRLEIKAADIFKILS----RKKFVLLLDDIWNRVD----------------LEKLGIPPM- 182 (769)
Q Consensus 124 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVlDdv~~~~~----------------~~~~~~~~~- 182 (769)
... .....+...++ ..+.++++|+++.... +..+...+.
T Consensus 104 ----------------~~g----~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 104 ----------------FVG----VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp ----------------CTT----HHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred ----------------hhh----hHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 000 01122223332 2357999999964210 011111111
Q ss_pred -CCCCCcEEEEeeccCCccc-----cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCch
Q 046742 183 -NTNGSSKIVFTTRSAGGCG-----LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLP 253 (769)
Q Consensus 183 -~~~~~~~iivTtR~~~v~~-----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 253 (769)
....+..++.||...+... ...-...+.++..+.++-.++++..+.......+ .....+++.+.|+.
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d----v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED----VDLALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS----STTHHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH----HHHHHHHHhcCCCC
Confidence 1122345555666554322 1123457889999999888888776533221111 12455777777765
No 236
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.12 E-value=0.0099 Score=63.16 Aligned_cols=120 Identities=14% Similarity=0.274 Sum_probs=84.2
Q ss_pred eEEEEeecccccccccC--CCCCCCccEEEccCC---CCcccchhhhcCCCcceEEEecCCCCCcccc-ccccCCcCCCE
Q 046742 393 VIRRMSLMENQVQSLSK--IPSCPSLITLFLNNN---NLKVITDGFFQFMPSLKVLNLSNNQSLKQLP-SGISRLVSLQH 466 (769)
Q Consensus 393 ~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~---~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~ 466 (769)
.|+.+.+.. .++.+.. +.+|.+|+.+.+..+ .++.+....|..+.+|+.+.+..+ +..++ ..+..+.+|+.
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhccccc
Confidence 467777653 3555443 788999999998776 477888888888888888877765 44554 35778888998
Q ss_pred EeccCCCCcccch-hhhcCCCCcEEecCCCcCcCccCcccccCCcccceeeeec
Q 046742 467 LNLSLTNIKELPE-ELKALVNLKCLNLDYTKSLCRIPRHLISNFSMLYILRIVD 519 (769)
Q Consensus 467 L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 519 (769)
+.+..+ +..++. .+..+.+|+.+.+..+ +..+....+.+ .+|+.+.+..
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~ 191 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPA 191 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECT
T ss_pred ccccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECC
Confidence 888643 444444 3677888888888765 56777665543 5677777754
No 237
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.94 E-value=0.0037 Score=61.38 Aligned_cols=93 Identities=15% Similarity=0.200 Sum_probs=54.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCC----CCcEEEEEEeCccccHHHHHHHHHHHhCCCCc----c---ccccc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPN----GFDFVIWVVLSRDLQIDRLQENIARKIGLYDQ----S---WKNKR 144 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~---~~~~~ 144 (769)
.-.+++|+|++|+|||||+..++... .... .-..++|++.........+ .++++.++.... . ....+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCC
Confidence 34589999999999999999999864 1111 2357889887765444433 334455543320 0 01112
Q ss_pred HH---HHHHHHHHHHc-cCCEEEEEecccC
Q 046742 145 LE---IKAADIFKILS-RKKFVLLLDDIWN 170 (769)
Q Consensus 145 ~~---~~~~~l~~~l~-~k~~LlVlDdv~~ 170 (769)
.. .....+.+.+. .+.-++|+|++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 22 23334445554 3567889998753
No 238
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.84 E-value=0.0031 Score=60.87 Aligned_cols=88 Identities=20% Similarity=0.191 Sum_probs=52.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCC----------cccccccH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYD----------QSWKNKRL 145 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~~~~~~~ 145 (769)
.-.+++|+|++|+||||+|.+++. . .+ ..++|++.....+...+.. +.+..+... ......+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~---~~--~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L---SG--KKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H---HC--SEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H---cC--CcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 345899999999999999999988 2 11 3578888766445444432 333332210 00011222
Q ss_pred HHHHHHHHHHHccCCEEEEEecccC
Q 046742 146 EIKAADIFKILSRKKFVLLLDDIWN 170 (769)
Q Consensus 146 ~~~~~~l~~~l~~k~~LlVlDdv~~ 170 (769)
.+....++..+..+.-++|+|.+..
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 3344445555444467999998754
No 239
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.82 E-value=0.00066 Score=68.32 Aligned_cols=71 Identities=18% Similarity=0.326 Sum_probs=46.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKIL 156 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 156 (769)
.+++.|+|++|+|||+||.+++... . . .+.|++...... +.. ...+.+.....+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G--~---~VlyIs~~~eE~-----------v~~-----~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-G--G---KDKYATVRFGEP-----------LSG-----YNTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-H--T---TSCCEEEEBSCS-----------STT-----CBCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-C--C---CEEEEEecchhh-----------hhh-----hhcCHHHHHHHHHHHH
Confidence 3467899999999999999998762 1 1 234565511111 111 1134566666677777
Q ss_pred ccCCEEEEEecccC
Q 046742 157 SRKKFVLLLDDIWN 170 (769)
Q Consensus 157 ~~k~~LlVlDdv~~ 170 (769)
...+ ++|+|++..
T Consensus 181 ~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 181 LQHR-VIVIDSLKN 193 (331)
T ss_dssp HHCS-EEEEECCTT
T ss_pred hhCC-EEEEecccc
Confidence 7666 999999854
No 240
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.81 E-value=0.0029 Score=65.41 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=58.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcc---cccccHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQS---WKNKRLEIKAADI 152 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 152 (769)
.-.++.|+|++|+||||||.+++.... ..-..++|++.....+.. .+++++...+. ....+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 346899999999999999999998762 111347888877665543 55666654321 1234556666666
Q ss_pred HHHHc-cCCEEEEEecccCc
Q 046742 153 FKILS-RKKFVLLLDDIWNR 171 (769)
Q Consensus 153 ~~~l~-~k~~LlVlDdv~~~ 171 (769)
...++ .+.-++|+|.+...
T Consensus 132 ~~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHHTSCCSEEEEECTTTC
T ss_pred HHHhhhcCCCeEEehHhhhh
Confidence 65554 34568999997543
No 241
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.68 E-value=0.0013 Score=59.06 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=34.4
Q ss_pred CCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeC
Q 046742 59 LGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLS 117 (769)
Q Consensus 59 vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 117 (769)
+|...+. ...|.+-....++|+|+.|+|||||++.++..... ..+ .++++...
T Consensus 21 ~g~n~~~---~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~-~~~~~~~~ 73 (149)
T 2kjq_A 21 GTENAEL---VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALE--AGK-NAAYIDAA 73 (149)
T ss_dssp SCCTHHH---HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHHT--TTC-CEEEEETT
T ss_pred cCccHHH---HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHHh--cCC-cEEEEcHH
Confidence 4554433 33333224568999999999999999999998732 222 25566544
No 242
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.63 E-value=0.0076 Score=63.93 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+|.++|++|+||||++..++..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 36799999999999999999999877
No 243
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.62 E-value=0.0077 Score=61.98 Aligned_cols=92 Identities=15% Similarity=0.262 Sum_probs=56.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCC----CCcEEEEEEeCccccHHHHHHHHHHHhCCCCcc-------ccccc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPN----GFDFVIWVVLSRDLQIDRLQENIARKIGLYDQS-------WKNKR 144 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 144 (769)
.-.++.|+|++|+||||+|.+++... .... .-..++|++....++.+++. ++++.++..... ....+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~-~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV-QLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCC
Confidence 34589999999999999999999875 2111 12478999888776666554 345566543210 01112
Q ss_pred HH---HHHHHHHHHHc--cCCEEEEEeccc
Q 046742 145 LE---IKAADIFKILS--RKKFVLLLDDIW 169 (769)
Q Consensus 145 ~~---~~~~~l~~~l~--~k~~LlVlDdv~ 169 (769)
.+ +....+.+.++ .+.-+||+|.+.
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 22 34445555554 345688888874
No 244
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.59 E-value=0.0063 Score=60.97 Aligned_cols=87 Identities=13% Similarity=0.120 Sum_probs=57.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcc---cccccHHHH-HHHHHH
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQS---WKNKRLEIK-AADIFK 154 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~-~~~l~~ 154 (769)
++-|.|++|+||||||.+++.... ....-..++|++.....+.. .+++++...+. ....+.++. ...+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~-~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM-RQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH-HHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 788999999999999999988762 11112468999887776653 36777765432 133455555 433322
Q ss_pred H--Hc-cCCEEEEEecccCc
Q 046742 155 I--LS-RKKFVLLLDDIWNR 171 (769)
Q Consensus 155 ~--l~-~k~~LlVlDdv~~~ 171 (769)
. ++ ++.-++|+|-|...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 2 23 46789999998543
No 245
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.59 E-value=0.0089 Score=63.13 Aligned_cols=104 Identities=20% Similarity=0.195 Sum_probs=67.7
Q ss_pred CCCCCCccEEEccCCCCcccchhhhcCCCcceEEEecCCCCCccccc-cccCCcCCCEEeccCCCCcccchh-hhcCCCC
Q 046742 410 IPSCPSLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNNQSLKQLPS-GISRLVSLQHLNLSLTNIKELPEE-LKALVNL 487 (769)
Q Consensus 410 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L 487 (769)
+.++..|+.+.+..+ ++.+....|..+.+|+.+.+..+ +..++. .+.++.+|+.+.+..+.++.++.. +.++.+|
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 456667777766554 56666666777777777777654 444443 466677777777776667666543 6667777
Q ss_pred cEEecCCCcCcCccCcccccCCcccceeeee
Q 046742 488 KCLNLDYTKSLCRIPRHLISNFSMLYILRIV 518 (769)
Q Consensus 488 ~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~ 518 (769)
+.+.+..+ ++.++..++.++++|+.+.+.
T Consensus 313 ~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 313 SSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred CEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 77777543 566666667777777776664
No 246
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.58 E-value=0.0057 Score=63.41 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=56.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcc---cccccHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQS---WKNKRLEIKAADI 152 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 152 (769)
.-.++.|+|++|+||||||.+++.... ..-..++|++.....+.. .++.++...+. ....+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~---~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 446899999999999999999987762 112357898887665543 25556543321 1223455555555
Q ss_pred HHHHcc-CCEEEEEecccC
Q 046742 153 FKILSR-KKFVLLLDDIWN 170 (769)
Q Consensus 153 ~~~l~~-k~~LlVlDdv~~ 170 (769)
....+. +.-+||+|.+..
T Consensus 132 ~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHTTTCCSEEEEECGGG
T ss_pred HHHHhcCCCCEEEEcChHh
Confidence 555443 456999999854
No 247
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.55 E-value=0.012 Score=60.89 Aligned_cols=92 Identities=17% Similarity=0.218 Sum_probs=55.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCC----CCcEEEEEEeCccccHHHHHHHHHHHhCCCCc----------ccc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPN----GFDFVIWVVLSRDLQIDRLQENIARKIGLYDQ----------SWK 141 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~ 141 (769)
.-.++.|+|++|+||||||.+++... .... .-..++|++....++.+.+. ++++.++.... ...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCC
Confidence 34589999999999999999999874 1111 23478999888766666554 34455554321 001
Q ss_pred cccHHHHHHHHHHHHc---cCCEEEEEeccc
Q 046742 142 NKRLEIKAADIFKILS---RKKFVLLLDDIW 169 (769)
Q Consensus 142 ~~~~~~~~~~l~~~l~---~k~~LlVlDdv~ 169 (769)
.....+....+.+.++ .+.-+||+|.+.
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 1222233344444444 344588888774
No 248
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.55 E-value=0.0016 Score=66.39 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=33.3
Q ss_pred CCCCC----chHHHHHHHHHhccC---CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLG----LESTFDEVWRCLGEE---HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vG----r~~~~~~l~~~L~~~---~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..|++ +...++.+.+++... ....+.|+|++|+|||+||..+++..
T Consensus 124 d~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 124 SDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp GGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45554 334455556666542 24678899999999999999999986
No 249
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.53 E-value=0.0021 Score=74.87 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=37.6
Q ss_pred CCCCCchHHHHHHHHHhcc---------CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGE---------EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++|.++.++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578999999988887742 122378999999999999999999987
No 250
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.53 E-value=0.0055 Score=63.56 Aligned_cols=87 Identities=18% Similarity=0.128 Sum_probs=54.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCccc---ccccHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSW---KNKRLEIKAADI 152 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 152 (769)
...++.|.|.+|+||||||.+++..... . -..++|++.....+.. .++.++...+.. ...+.++..+.+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~-~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR-E--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH-T--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-C--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 4468999999999999999999887621 1 1357899887665533 245555432211 122345555555
Q ss_pred HHHHc-cCCEEEEEecccC
Q 046742 153 FKILS-RKKFVLLLDDIWN 170 (769)
Q Consensus 153 ~~~l~-~k~~LlVlDdv~~ 170 (769)
....+ .+.-+||+|.+..
T Consensus 134 ~~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHHTCCSEEEEECGGG
T ss_pred HHHHhccCCCEEEEcCHHH
Confidence 44433 3445899998743
No 251
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.50 E-value=0.00074 Score=64.90 Aligned_cols=113 Identities=14% Similarity=-0.028 Sum_probs=62.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFKIL 156 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 156 (769)
-.++.|+|+.|+||||++..++++.. ..... ++.+....+.. ...+++.++++..+........+..+.+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~--~~g~k-Vli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLE--YADVK-YLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH--HTTCC-EEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHH--hcCCE-EEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 46888999999999999999998872 12233 33443322211 22244555554432222233344444444444
Q ss_pred ccCCE-EEEEecccCc--ccccccCCCCCCCCCCcEEEEeeccCC
Q 046742 157 SRKKF-VLLLDDIWNR--VDLEKLGIPPMNTNGSSKIVFTTRSAG 198 (769)
Q Consensus 157 ~~k~~-LlVlDdv~~~--~~~~~~~~~~~~~~~~~~iivTtR~~~ 198 (769)
.+.++ +||+|.+... +.++.+. .+.+ .|..||+|-+..+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecccc
Confidence 44444 9999998643 1222221 1111 2567888888554
No 252
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.50 E-value=0.0068 Score=63.08 Aligned_cols=87 Identities=18% Similarity=0.139 Sum_probs=57.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcc---cccccHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQS---WKNKRLEIKAADI 152 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 152 (769)
...++.|+|.+|+||||||.+++..... . -..++|++.....+.. .++.++...+. ....+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~-~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK-A--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH-T--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH-C--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 3458899999999999999999887621 1 2358899887765543 24555543221 1223456666666
Q ss_pred HHHHcc-CCEEEEEecccC
Q 046742 153 FKILSR-KKFVLLLDDIWN 170 (769)
Q Consensus 153 ~~~l~~-k~~LlVlDdv~~ 170 (769)
.+..+. +.-+||+|.+..
T Consensus 145 ~~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHHTTTCCSEEEEECTTT
T ss_pred HHHHhcCCCCEEEEeChHH
Confidence 665543 345999999853
No 253
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.42 E-value=0.012 Score=67.39 Aligned_cols=170 Identities=15% Similarity=0.156 Sum_probs=79.6
Q ss_pred CCCCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccH
Q 046742 56 PQTLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQI 122 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 122 (769)
....|.++.+++|.+.+.- ...+-|.++|++|+|||.+|+.+++.. ... ++.++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~-----f~~v~~---- 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIKG---- 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCE-----EEECCH----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCc-----eEEecc----
Confidence 4556888888888776631 134467899999999999999999997 222 333322
Q ss_pred HHHHHHHHHHhCCCCcccccccHHHHHHHHHHHHccCCEEEEEecccCccc----------------ccccCCCCC--CC
Q 046742 123 DRLQENIARKIGLYDQSWKNKRLEIKAADIFKILSRKKFVLLLDDIWNRVD----------------LEKLGIPPM--NT 184 (769)
Q Consensus 123 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~~~--~~ 184 (769)
.+++ .. +.......+...+...-+..+.+|+||+++.... +..+...+. ..
T Consensus 545 ~~l~----s~-------~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 545 PELL----TM-------WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp HHHH----TT-------TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred chhh----cc-------ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 1111 11 1222333333333333345789999999975310 111111111 11
Q ss_pred CCCcEEEEeeccCCccc-----cccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCc
Q 046742 185 NGSSKIVFTTRSAGGCG-----LMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGL 252 (769)
Q Consensus 185 ~~~~~iivTtR~~~v~~-----~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 252 (769)
..+.-||-||...+... ..+-...+.++..+.++-.++|+..+.......+.+ .+.+++.+.|+
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~d----l~~la~~t~g~ 682 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGF 682 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHhCCCC
Confidence 22333333554443321 112345778877777777788877664433222222 34556666654
No 254
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.31 E-value=0.003 Score=58.74 Aligned_cols=117 Identities=18% Similarity=0.145 Sum_probs=60.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc---cccHHHHHHHHHH---HhCCCCccccc-------cc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR---DLQIDRLQENIAR---KIGLYDQSWKN-------KR 144 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~---~l~~~~~~~~~-------~~ 144 (769)
..|.|++..|.||||.|...+-+.. ...+. +.++.... ......++..+.- +.+... .+.. ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~--g~G~r-V~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf-~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV--GHGKN-VGVVQFIKGTWPNGERNLLEPHGVEFQVMATGF-TWETQNREADTAA 104 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH--HTTCC-EEEEESSCCSSCCHHHHHHGGGTCEEEECCTTC-CCCGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--HCCCe-EEEEEeeCCCCCccHHHHHHhCCcEEEEccccc-ccCCCCcHHHHHH
Confidence 4566777777999999999988873 23333 45554332 2233344443310 000000 0111 11
Q ss_pred HHHHHHHHHHHHccCCE-EEEEecccCc-----ccccccCCCCCCCCCCcEEEEeeccCC
Q 046742 145 LEIKAADIFKILSRKKF-VLLLDDIWNR-----VDLEKLGIPPMNTNGSSKIVFTTRSAG 198 (769)
Q Consensus 145 ~~~~~~~l~~~l~~k~~-LlVlDdv~~~-----~~~~~~~~~~~~~~~~~~iivTtR~~~ 198 (769)
.......+++.+...+| |||||++-.. -+.+++...+.....+..||+|+|...
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 23334445555655555 9999998421 122222222223345668999999863
No 255
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.29 E-value=0.0042 Score=61.95 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=35.0
Q ss_pred CCCCCchHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGE--EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++|++..+.++.+.+.. .....|.|+|++|+|||++|+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 4579999999988877643 333567799999999999999999886
No 256
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.25 E-value=0.014 Score=60.11 Aligned_cols=93 Identities=13% Similarity=0.239 Sum_probs=56.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccC-----------CCCCC--cEEEEEEeCccccHHHHHHHHHHHhCCCCcc---
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSN-----------TPNGF--DFVIWVVLSRDLQIDRLQENIARKIGLYDQS--- 139 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~-----------~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--- 139 (769)
.-.++.|+|++|+|||++|.+++..... ..+.. ..++|++....++.+++.+ +++.++.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 3468999999999999999999876310 01111 4789998887766666553 45556543210
Q ss_pred ----cccccHH---HHHHHHHHHHcc--CCEEEEEeccc
Q 046742 140 ----WKNKRLE---IKAADIFKILSR--KKFVLLLDDIW 169 (769)
Q Consensus 140 ----~~~~~~~---~~~~~l~~~l~~--k~~LlVlDdv~ 169 (769)
....+.+ +....+.+.++. +.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0112222 334445555543 34588888874
No 257
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.23 E-value=0.02 Score=60.77 Aligned_cols=90 Identities=20% Similarity=0.116 Sum_probs=48.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCCcc-cccccHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYDQS-WKNKRLEIKAADIFK 154 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 154 (769)
..+|+++|++|+||||++..++..+. . ... .+..++.... ....+.+....+..+.+... ....+.........+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~-~-~G~-kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYK-K-RGY-KVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHH-H-TTC-CEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H-cCC-eEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 57999999999999999999998773 1 222 3444554332 23333344444554443211 112233333333333
Q ss_pred HHc-cCCEEEEEeccc
Q 046742 155 ILS-RKKFVLLLDDIW 169 (769)
Q Consensus 155 ~l~-~k~~LlVlDdv~ 169 (769)
.+. ...=++|+|-..
T Consensus 174 ~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAG 189 (433)
T ss_dssp HTTTTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 333 233356777654
No 258
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.22 E-value=0.0025 Score=74.99 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=37.1
Q ss_pred CCCCchHHHHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 57 QTLGLESTFDEVWRCLGEE---------HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.++|.+..++.+...+... ....+.|+|+.|+|||++|+.+++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999988877431 12478899999999999999999886
No 259
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.15 E-value=0.023 Score=60.61 Aligned_cols=105 Identities=18% Similarity=0.156 Sum_probs=56.5
Q ss_pred hHHHHHHHHHhcc---------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHH
Q 046742 62 ESTFDEVWRCLGE---------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIAR 131 (769)
Q Consensus 62 ~~~~~~l~~~L~~---------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~ 131 (769)
+...+++.+.+.. ...++|.++|.+|+||||++..++..+. .+... .+.-++.... ....+.+.....
T Consensus 76 ~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~-~~~G~-kVllvd~D~~r~~a~~ql~~~~~ 153 (433)
T 2xxa_A 76 KIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLR-EKHKK-KVLVVSADVYRPAAIKQLETLAE 153 (433)
T ss_dssp HHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHH-HTSCC-CEEEEECCCSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-HhcCC-eEEEEecCCCCccHHHHHHhhcc
Confidence 4455666676642 2357999999999999999999998873 22123 3455555432 233333333444
Q ss_pred HhCCCCcc-cccccHHHHHHHHHHHHccCCE-EEEEecc
Q 046742 132 KIGLYDQS-WKNKRLEIKAADIFKILSRKKF-VLLLDDI 168 (769)
Q Consensus 132 ~l~~~~~~-~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv 168 (769)
..++..-. ....+.........+.++.+.| ++|+|-.
T Consensus 154 ~~~l~v~~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 154 QVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHTCEECCCCSSSCHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred cCCeeEEeCCCCCCHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 44432110 0112344443334444442223 6677764
No 260
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.14 E-value=0.028 Score=54.42 Aligned_cols=58 Identities=22% Similarity=0.256 Sum_probs=36.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCC---CCCCcEEEEEEeCccccHHHHHHHHHHHhCC
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNT---PNGFDFVIWVVLSRDLQIDRLQENIARKIGL 135 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 135 (769)
-.+++|+|+.|+|||||++.++...... ...-..++|+......... -+..+.+..+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~-~i~~~~~~~~~ 85 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE-RIREIAQNRGL 85 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH-HHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH-HHHHHHHHcCC
Confidence 3589999999999999999998754110 0123467888765533332 23344444443
No 261
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.05 E-value=0.016 Score=56.29 Aligned_cols=39 Identities=26% Similarity=0.112 Sum_probs=28.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR 118 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 118 (769)
-.+++|+|++|+|||||++.++..... .-..++|+....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~ 61 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE 61 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc
Confidence 358999999999999999999866521 112366665443
No 262
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.05 E-value=0.025 Score=57.03 Aligned_cols=90 Identities=17% Similarity=0.044 Sum_probs=52.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc-cHHHHHHHHHHHhCCCCcc-cccccHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL-QIDRLQENIARKIGLYDQS-WKNKRLEIKAADIFK 154 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 154 (769)
..+++++|.+|+||||++..++..+.. . -..+.+++..... ...+.++...+..++..-. ....+..+......+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~-~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK-K--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH-T--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-C--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 458999999999999999999987721 1 1235666654332 2333344455555543211 122344455444555
Q ss_pred HHccCCE-EEEEeccc
Q 046742 155 ILSRKKF-VLLLDDIW 169 (769)
Q Consensus 155 ~l~~k~~-LlVlDdv~ 169 (769)
.++.+.| ++|+|-.-
T Consensus 175 ~~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEeCCC
Confidence 5543333 78888753
No 263
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.03 E-value=0.005 Score=63.30 Aligned_cols=97 Identities=16% Similarity=0.130 Sum_probs=52.2
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc-cHHHHHHHHHHHhCCCC-ccccccc
Q 046742 68 VWRCLGE-EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL-QIDRLQENIARKIGLYD-QSWKNKR 144 (769)
Q Consensus 68 l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-~~~~~~~ 144 (769)
.++.+.. ..-..++|+|++|+|||||++.+++........+.+ +++-++... ...++.+.+ .... ......+
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~~Ev~~~~~~~----~~~vV~atadep 238 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERPEEVTEMQRLV----KGEVVASTFDEP 238 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCHHHHHHHHTTC----SSEEEEECTTSC
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCChHHHHHHHHHh----CeEEEEeCCCCC
Confidence 3444433 334588999999999999999988765211123433 456666543 344443332 1000 0001111
Q ss_pred HH----------HHHHHHHHHHccCCEEEEEecccCc
Q 046742 145 LE----------IKAADIFKILSRKKFVLLLDDIWNR 171 (769)
Q Consensus 145 ~~----------~~~~~l~~~l~~k~~LlVlDdv~~~ 171 (769)
.. ..++.+++ +++.+|+++||+...
T Consensus 239 ~~~r~~~a~~alt~AEyfrd--~G~dVLil~DslTR~ 273 (422)
T 3ice_A 239 ASRHVQVAEMVIEKAKRLVE--HKKDVIILLDSITRL 273 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--TSCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh--cCCCEEEEEeCchHH
Confidence 11 11222332 478999999998543
No 264
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.02 E-value=0.029 Score=59.01 Aligned_cols=93 Identities=16% Similarity=0.189 Sum_probs=53.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCC---CCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcc-------cccccH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNT---PNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQS-------WKNKRL 145 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 145 (769)
.-.++.|+|++|+|||||+.+++-..... .+.-..++|++....+....+ +.+++.++..... ....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 34589999999999999999876443110 112356889887765554443 3466666653210 011112
Q ss_pred ---HHHHHHHHHHHc-cCCEEEEEeccc
Q 046742 146 ---EIKAADIFKILS-RKKFVLLLDDIW 169 (769)
Q Consensus 146 ---~~~~~~l~~~l~-~k~~LlVlDdv~ 169 (769)
.+....+.+.+. .+.-+||+|.+.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 223333333333 355688888864
No 265
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.02 E-value=0.0065 Score=57.68 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=34.0
Q ss_pred CchHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 60 GLESTFDEVWRCLGE---EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 60 Gr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.|++.++++.+.+.. ....+|+|+|+.|+||||+++.+...+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 366677788777754 345689999999999999999998865
No 266
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.96 E-value=0.0083 Score=61.06 Aligned_cols=46 Identities=9% Similarity=0.127 Sum_probs=37.9
Q ss_pred CCCCCchHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGE--EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+.++|++..+.++.+.+.. .....|.|+|++|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 4579999999999888754 334567799999999999999999875
No 267
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.93 E-value=0.018 Score=59.86 Aligned_cols=164 Identities=12% Similarity=-0.025 Sum_probs=95.4
Q ss_pred HHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcccccccHHH
Q 046742 68 VWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSWKNKRLEI 147 (769)
Q Consensus 68 l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 147 (769)
+.+.+...-.++..++|+.|.||++.|+.+..... ...|+....+.+....+..++...+.
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~----------------- 69 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFSLCQ----------------- 69 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHHHHH-----------------
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHHHhc-----------------
Confidence 33444434567889999999999999999988652 12343221222222223333222211
Q ss_pred HHHHHHHHHccCCEEEEEecccC-c--ccccccCCCCCCCCCCcEEEEeeccC-------Ccccc-ccccceEEcCCCCH
Q 046742 148 KAADIFKILSRKKFVLLLDDIWN-R--VDLEKLGIPPMNTNGSSKIVFTTRSA-------GGCGL-MEAHRIFKVKCLEH 216 (769)
Q Consensus 148 ~~~~l~~~l~~k~~LlVlDdv~~-~--~~~~~~~~~~~~~~~~~~iivTtR~~-------~v~~~-~~~~~~~~l~~l~~ 216 (769)
..-+-+++-++|+|+++. . ...+.+...+.....++.+|+++... .+... ......++..+++.
T Consensus 70 -----~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~ 144 (343)
T 1jr3_D 70 -----AMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQ 144 (343)
T ss_dssp -----HHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCT
T ss_pred -----CcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCH
Confidence 012345677899999866 2 22333322222223467777766432 12222 12346789999999
Q ss_pred HHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHH
Q 046742 217 KEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALIT 258 (769)
Q Consensus 217 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 258 (769)
++....+.+.+...+... ..+.++.+++.++|....+..
T Consensus 145 ~~l~~~l~~~~~~~g~~i---~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 145 AQLPRWVAARAKQLNLEL---DDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp THHHHHHHHHHHHTTCEE---CHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhchHHHHHHH
Confidence 999988888764333111 257788999999998876654
No 268
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.90 E-value=0.043 Score=58.02 Aligned_cols=89 Identities=15% Similarity=0.124 Sum_probs=47.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc-cHHHHHHHHHHHhCCCCcc-cccccHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL-QIDRLQENIARKIGLYDQS-WKNKRLEIKAADIFK 154 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 154 (769)
..+++|+|++|+||||++..++..+. .. . ..+..+...... ...+.+....+..+++.-. ....+...+.....+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~-~~-g-~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~ 174 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK-GK-G-RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH-TT-T-CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-Hc-C-CeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHH
Confidence 56899999999999999999998873 12 2 234555543322 2222234445555543211 011233344333444
Q ss_pred HHccCCE-EEEEecc
Q 046742 155 ILSRKKF-VLLLDDI 168 (769)
Q Consensus 155 ~l~~k~~-LlVlDdv 168 (769)
.++.+.| ++|+|-.
T Consensus 175 ~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 175 KARLEARDLILVDTA 189 (425)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHHCCCCEEEEcCC
Confidence 4432333 6666743
No 269
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.86 E-value=0.024 Score=58.74 Aligned_cols=93 Identities=19% Similarity=0.282 Sum_probs=54.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCC----cEEEEEEeCccccHHHHHHHHHHHhCCCCc----------ccc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGF----DFVIWVVLSRDLQIDRLQENIARKIGLYDQ----------SWK 141 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~ 141 (769)
.-.++.|+|+.|+|||||+.+++... ...... ..++|++....+.... +..+++..+.... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCC
Confidence 44689999999999999999999875 211111 2458888765543333 3334544433210 001
Q ss_pred cccHHHHHHHHHHHHc------cCCEEEEEecccC
Q 046742 142 NKRLEIKAADIFKILS------RKKFVLLLDDIWN 170 (769)
Q Consensus 142 ~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~ 170 (769)
.....+....+...+. .+.-+||+|.+-.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 1223344445555554 3567999998754
No 270
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.84 E-value=0.02 Score=57.82 Aligned_cols=86 Identities=14% Similarity=0.052 Sum_probs=46.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCCcccccccHHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYDQSWKNKRLEIKAADIFK 154 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 154 (769)
...+++|+|++|+||||++..++..+....+ . .+..+..... ....+.+....+..+++.. ...+.......+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-K-KIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-C-CEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-C-EEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 4569999999999999999999887621112 2 3455554332 2333334444444443321 1122233322232
Q ss_pred HHccCCEEEEEec
Q 046742 155 ILSRKKFVLLLDD 167 (769)
Q Consensus 155 ~l~~k~~LlVlDd 167 (769)
.+ .+.=++|+|-
T Consensus 179 ~~-~~~dlvIiDT 190 (296)
T 2px0_A 179 LF-SEYDHVFVDT 190 (296)
T ss_dssp HG-GGSSEEEEEC
T ss_pred Hh-cCCCEEEEeC
Confidence 33 3345788884
No 271
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.81 E-value=0.046 Score=55.86 Aligned_cols=57 Identities=25% Similarity=0.321 Sum_probs=36.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCC
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGL 135 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~ 135 (769)
...+++|+|+.|+||||+++.++..+. . ... .+.++..... ....+.+....+.+++
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~-~-~~g-~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLK-N-HGF-SVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH-H-TTC-CEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-h-cCC-EEEEEeecccccchHHHHHHHHHHcCc
Confidence 356999999999999999999998762 1 222 3445443322 2334444555666653
No 272
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.76 E-value=0.0058 Score=56.64 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+|.|+|++|+||||+|+.++..+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999987
No 273
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.73 E-value=0.033 Score=56.37 Aligned_cols=105 Identities=18% Similarity=0.099 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhcc--------CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc-cHHHHHHHHHHH
Q 046742 62 ESTFDEVWRCLGE--------EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL-QIDRLQENIARK 132 (769)
Q Consensus 62 ~~~~~~l~~~L~~--------~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 132 (769)
+...++|.+.+.. ....+++|+|++|+||||++..++..+. . . -..+.++...... ...+-+...++.
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~-~-~-g~kV~lv~~D~~r~~a~eqL~~~~~~ 157 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-D-E-GKSVVLAAADTFRAAAIEQLKIWGER 157 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-H-T-TCCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH-h-c-CCEEEEEccccccHHHHHHHHHHHHH
Confidence 4445556666632 2346899999999999999999998872 1 1 1235555543321 222223444555
Q ss_pred hCCCCcc-cccccHHHH-HHHHHHHHccCCEEEEEeccc
Q 046742 133 IGLYDQS-WKNKRLEIK-AADIFKILSRKKFVLLLDDIW 169 (769)
Q Consensus 133 l~~~~~~-~~~~~~~~~-~~~l~~~l~~k~~LlVlDdv~ 169 (769)
.+++.-. ....+.... ...+...+..+.=++|+|..-
T Consensus 158 ~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 158 VGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred cCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 5543210 011222222 223444444455588889763
No 274
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.73 E-value=0.0076 Score=62.33 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=38.4
Q ss_pred CCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++|+++.++.+...+..+ ..+.++|++|+|||++|+.+++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 56899999999998888654 367899999999999999999987
No 275
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.65 E-value=0.027 Score=59.91 Aligned_cols=52 Identities=21% Similarity=0.368 Sum_probs=35.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc-cHHHHHHHHHH
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL-QIDRLQENIAR 131 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~ 131 (769)
..++|+|.+|+|||||+..++.... ...-+.++++.+++.. ...+++.++.+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA--QEHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh--hccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 3688999999999999999987752 1122345666666543 45566666654
No 276
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.65 E-value=0.069 Score=56.63 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=45.8
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHh
Q 046742 68 VWRCLGE-EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKI 133 (769)
Q Consensus 68 l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l 133 (769)
.++.+.. .+-..++|.|.+|+|||+|+.++++... +.+-+.++++-++.. ....++++++.+.-
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~ 208 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIESG 208 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHHT
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhcc
Confidence 4555543 3345789999999999999999998752 234466777777765 45677888887663
No 277
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.62 E-value=0.0095 Score=56.88 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 63 STFDEVWRCLGE--EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 63 ~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+.+++|.+.+.+ ....+|+|+|+.|+|||||++.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445566666543 345699999999999999999998876
No 278
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.59 E-value=0.043 Score=56.05 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=37.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARK 132 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 132 (769)
.-.++.|.|.+|+||||+|.+++.... .++ ..++|++.. .+.+++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMS-DND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH-TTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 345899999999999999999987762 222 567887755 3566666666554
No 279
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.54 E-value=0.01 Score=64.40 Aligned_cols=44 Identities=11% Similarity=0.043 Sum_probs=38.0
Q ss_pred CCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+.++|+++.++.+...+..+ .-|.++|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 45799999999988877654 467899999999999999999987
No 280
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.54 E-value=0.0069 Score=55.74 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+|+|.|++|+||||+|+.++..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999987
No 281
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.45 E-value=0.016 Score=60.72 Aligned_cols=45 Identities=20% Similarity=0.088 Sum_probs=37.1
Q ss_pred CCCCchHHHHHHHHHhc-------------c--CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 57 QTLGLESTFDEVWRCLG-------------E--EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~-------------~--~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.++|.+..++.+...+. . ...+.|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 36899999999988772 1 134568899999999999999999987
No 282
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.40 E-value=0.012 Score=58.02 Aligned_cols=26 Identities=31% Similarity=0.254 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+|.|+|++|+||||+|+.++..+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999987
No 283
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.40 E-value=0.00078 Score=63.03 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.++.|+|+.|+||||++.+++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999998888776
No 284
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.34 E-value=0.0094 Score=56.45 Aligned_cols=26 Identities=35% Similarity=0.236 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+|+|+|++|+||||+|+.++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999987
No 285
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.34 E-value=0.032 Score=54.64 Aligned_cols=39 Identities=21% Similarity=0.070 Sum_probs=28.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR 118 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 118 (769)
-.++.|.|++|+||||+|.+++..... .-..++|+....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 358999999999999999998776521 123477777554
No 286
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.32 E-value=0.0074 Score=56.09 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+.|+|+||+|+|||||++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 457899999999999999999876
No 287
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.29 E-value=0.0095 Score=55.60 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+.|.|+|++|+||||+|+.++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999987
No 288
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.28 E-value=0.036 Score=52.48 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+|.|.|++|+||+|.|+.++..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999987
No 289
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.28 E-value=0.0077 Score=62.81 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=35.6
Q ss_pred CCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++|.+..+..+...+.......|.|+|++|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 5679999877665554443333458899999999999999999976
No 290
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.27 E-value=0.021 Score=60.14 Aligned_cols=46 Identities=20% Similarity=0.125 Sum_probs=36.8
Q ss_pred CCCCCchHHHHHHHHHhc------------------------------cCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLG------------------------------EEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~------------------------------~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++|.++.++.|...+. ......+.++|++|+|||++|+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999988877762 0123468899999999999999999987
No 291
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.27 E-value=0.0096 Score=54.89 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 554
No 292
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.24 E-value=0.016 Score=55.97 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 62 ESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 62 ~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
++..+++.+.+......+|+|+|.+|+|||||+..++...
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3344555555555667899999999999999999999876
No 293
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.22 E-value=0.011 Score=54.97 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+++|+|++|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999999875
No 294
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.21 E-value=0.059 Score=51.36 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=24.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...++|.|.|++|+||||.|+.++..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999987
No 295
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.18 E-value=0.12 Score=52.75 Aligned_cols=51 Identities=16% Similarity=0.086 Sum_probs=36.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARK 132 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 132 (769)
-.++.|.|.+|+||||+|.+++..... .=..++|++.. .+.+++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC--CCHHHHHHHHHHH
Confidence 358999999999999999999988621 22356776654 3456666666544
No 296
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.16 E-value=0.11 Score=56.14 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++|+|+|.+|+||||++..++..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999876
No 297
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.15 E-value=0.0096 Score=54.82 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+|+|+|+.|+||||+++.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999986
No 298
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.15 E-value=0.012 Score=55.71 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
....+|+|+|++|+||||+|+.++...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445799999999999999999999887
No 299
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.13 E-value=0.043 Score=51.55 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.|+|.|+.|+||||+|+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 300
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.13 E-value=0.012 Score=55.75 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
....+|+|+|+.|+||||+++.++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345689999999999999999999876
No 301
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.12 E-value=0.012 Score=54.58 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhh
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNK 100 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~ 100 (769)
.+|.|.|++|+||||+|+.++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh
Confidence 57899999999999999999983
No 302
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.07 E-value=0.013 Score=54.73 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+|+|.|++|+||||+++.++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999999887
No 303
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.06 E-value=0.013 Score=54.97 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+++|+|+.|+||||+++.++...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcc
Confidence 4689999999999999999998864
No 304
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.02 E-value=0.011 Score=56.21 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|+|.|+.|+||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999886
No 305
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.00 E-value=0.014 Score=54.81 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|.|.|++|+||||+|+.++..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999886
No 306
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.97 E-value=0.025 Score=57.87 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=32.6
Q ss_pred CCchHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 59 LGLESTFDEVWRCLG----EEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 59 vGr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
|+-+.-.+++.+.+. .+....|+|+|+.|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 455556666666653 3445678999999999999999998876
No 307
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.95 E-value=0.013 Score=54.98 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+|+|.|++|+||||+|+.++..+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987
No 308
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.92 E-value=0.016 Score=55.31 Aligned_cols=26 Identities=27% Similarity=0.172 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+|+|+|+.|+||||+++.++...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 44689999999999999999999876
No 309
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.91 E-value=0.013 Score=54.44 Aligned_cols=25 Identities=40% Similarity=0.332 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.++|.|+|++|+||||+|+.++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999887
No 310
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.91 E-value=0.074 Score=53.58 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=48.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcccc-HHHHHHHHHHHhCCCCccc-ccccHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQ-IDRLQENIARKIGLYDQSW-KNKRLEIKAADIFK 154 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 154 (769)
..+++|+|.+|+||||++..++.... ..-..+.++....... ....+....+..++..-.. ...+..++.....+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH---HTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999998772 1112355555433221 2222334455555432110 11233333333333
Q ss_pred HH-ccCCEEEEEecc
Q 046742 155 IL-SRKKFVLLLDDI 168 (769)
Q Consensus 155 ~l-~~k~~LlVlDdv 168 (769)
.+ ..+.=++|+|-.
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 33 244457888976
No 311
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.90 E-value=0.019 Score=55.27 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=32.3
Q ss_pred chHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 61 LESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 61 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.++..+++.+.+.....++|+|+|.+|+|||||+..+....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455555555555677899999999999999999999886
No 312
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.89 E-value=0.014 Score=54.64 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+|+|.|++|+||||+|+.++..+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999977
No 313
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.89 E-value=0.013 Score=55.63 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+|+|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34688999999999999999999886
No 314
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.84 E-value=0.025 Score=52.79 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=32.7
Q ss_pred CCchHHHHHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 59 LGLESTFDEVWRCLGE-EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 59 vGr~~~~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
|....-+..+..++.. +..+.+.|+|++|+||||+|..+++..
T Consensus 39 ~~~~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 39 IEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CCHHHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444556777777754 233479999999999999999999987
No 315
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.83 E-value=0.035 Score=52.87 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..|+|.|++|+||||+|+.++..+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999987
No 316
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.76 E-value=0.025 Score=56.79 Aligned_cols=27 Identities=22% Similarity=0.133 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
....+|+|+|+.|+||||||+.+...+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998876
No 317
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.75 E-value=0.015 Score=57.27 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+|+|.|+.|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999886
No 318
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.74 E-value=0.014 Score=53.93 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.|.|.|++|+||||+|+.++..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68899999999999999999987
No 319
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.72 E-value=0.1 Score=55.50 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=62.3
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc-cHHHHHHHHHHHhCCC-------Cc
Q 046742 68 VWRCLGE-EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL-QIDRLQENIARKIGLY-------DQ 138 (769)
Q Consensus 68 l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~ 138 (769)
.++.|.. .+-..++|.|.+|+|||+|+.++++... +.+-+.++++-++... ...++++++.+.-.+. ..
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 3455543 3345789999999999999999999852 2344677888777654 5777888887653222 00
Q ss_pred ----ccccccHH------HHHHHHHHHHc---cCCEEEEEecccC
Q 046742 139 ----SWKNKRLE------IKAADIFKILS---RKKFVLLLDDIWN 170 (769)
Q Consensus 139 ----~~~~~~~~------~~~~~l~~~l~---~k~~LlVlDdv~~ 170 (769)
.....+.. ...-.+-++++ ++.+|+++||+-.
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 00111111 11222334454 5789999999743
No 320
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.70 E-value=0.018 Score=54.21 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+|+|.|+.|+||||+|+.++..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999886
No 321
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.67 E-value=0.021 Score=53.24 Aligned_cols=24 Identities=25% Similarity=0.165 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhh
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNK 100 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~ 100 (769)
...|+|+|+.|+||||+++.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999998
No 322
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.66 E-value=0.054 Score=67.68 Aligned_cols=87 Identities=18% Similarity=0.112 Sum_probs=57.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcc---cccccHHHHHHH
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQS---WKNKRLEIKAAD 151 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 151 (769)
...+.|.|+|++|+|||+||.+++..... .=..++|+++....+... ++.++...+. ....+.++....
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~ 1496 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEI 1496 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHH
Confidence 35678999999999999999999888632 223477887777655554 4555532211 122334455555
Q ss_pred HHHHHc-cCCEEEEEeccc
Q 046742 152 IFKILS-RKKFVLLLDDIW 169 (769)
Q Consensus 152 l~~~l~-~k~~LlVlDdv~ 169 (769)
+.+..+ .+.-+||+|.+.
T Consensus 1497 ~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1497 CDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCCCEEEEcChh
Confidence 555544 456799999985
No 323
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.65 E-value=0.069 Score=50.18 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=33.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHH
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARK 132 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 132 (769)
.|+|-|+.|+||||.++.+++.+. ..... +++..-+......+.++.++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~--~~g~~-v~~treP~~t~~~~~ir~~l~~ 52 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE--KRGKK-VILKREPGGTETGEKIRKILLE 52 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH--HTTCC-EEEEESSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--HCCCc-EEEEECCCCCcHHHHHHHHhhc
Confidence 477889999999999999999883 12233 4444444443445555555543
No 324
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.65 E-value=0.028 Score=59.68 Aligned_cols=46 Identities=22% Similarity=0.177 Sum_probs=37.0
Q ss_pred CCCCCchHHHHHHHHHhcc--------------CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGE--------------EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~--------------~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++|.++.++.+...+.. ...+.|.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4568999988888766621 134568899999999999999999987
No 325
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.64 E-value=0.021 Score=54.16 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+|+|.|+.|+||||+|+.++..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999886
No 326
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.64 E-value=0.018 Score=52.66 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|+|.|+.|+||||+|+.++..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999987
No 327
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.64 E-value=0.028 Score=56.54 Aligned_cols=26 Identities=27% Similarity=0.158 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+|.|.|++|+||||+|+.++...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999999876
No 328
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.63 E-value=0.021 Score=53.47 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999876
No 329
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.61 E-value=0.019 Score=53.98 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|+|.|+.|+||||+|+.++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999876
No 330
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.61 E-value=0.016 Score=54.04 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999775
No 331
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.61 E-value=0.098 Score=53.28 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|+|+|++|+||||++..++..+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999877
No 332
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.61 E-value=0.12 Score=52.15 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=34.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARK 132 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 132 (769)
.-.+++|.|++|+|||||++.++.... .... ..++|+.... +..++...+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~-~~~G-~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWG-TAMG-KKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHH-HTSC-CCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH-HHcC-CeEEEEeCcC--CHHHHHHHHHHH
Confidence 345899999999999999999988762 1111 1366665443 334444444433
No 333
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.60 E-value=0.018 Score=54.53 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.|+|.|+.|+||||+|+.++..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999987
No 334
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.59 E-value=0.02 Score=52.81 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|+|+|+.|+||||+++.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998875
No 335
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.59 E-value=0.014 Score=54.26 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+|+|+|++|+||||+|+.++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999987
No 336
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.58 E-value=0.022 Score=54.08 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+++|+|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998875
No 337
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.56 E-value=0.12 Score=52.37 Aligned_cols=26 Identities=31% Similarity=0.310 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+|+|.|+.|+||||+|+.+..-.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45589999999999999999998876
No 338
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.54 E-value=0.055 Score=46.97 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=4.8
Q ss_pred CEEeccCCCCccc
Q 046742 465 QHLNLSLTNIKEL 477 (769)
Q Consensus 465 ~~L~l~~~~l~~l 477 (769)
++|+|++|+|+.+
T Consensus 34 ~~L~Ls~N~l~~l 46 (130)
T 3rfe_A 34 TELVLTGNNLTAL 46 (130)
T ss_dssp SEEECTTSCCSSC
T ss_pred CEEECCCCcCCcc
Confidence 3333333333333
No 339
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.52 E-value=0.02 Score=53.99 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|+|.|++|+||||+|+.++..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999987
No 340
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.46 E-value=0.036 Score=54.25 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=29.8
Q ss_pred CchHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 60 GLESTFDEVWRCLGE--EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 60 Gr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+....+.++.+-... ....+|+|.|++|+||||+|+.+++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 10 STIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 334444444433322 355689999999999999999999876
No 341
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.45 E-value=0.018 Score=52.96 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+|+|.|+.|+||||+|+.++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999987
No 342
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.42 E-value=0.025 Score=53.73 Aligned_cols=25 Identities=36% Similarity=0.258 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|+|+|+.|+||||+++.++...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998875
No 343
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.41 E-value=0.021 Score=55.25 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+|+|+|+.|+||||+|+.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999876
No 344
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.40 E-value=0.078 Score=49.42 Aligned_cols=64 Identities=17% Similarity=0.087 Sum_probs=29.9
Q ss_pred CCCCCccEEEccCC-CCccc----chhhhcCCCcceEEEecCCCCCcc-----ccccccCCcCCCEEeccCCCCc
Q 046742 411 PSCPSLITLFLNNN-NLKVI----TDGFFQFMPSLKVLNLSNNQSLKQ-----LPSGISRLVSLQHLNLSLTNIK 475 (769)
Q Consensus 411 ~~~~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~L~~~~~~~~-----lp~~i~~l~~L~~L~l~~~~l~ 475 (769)
.+-+.|+.|+|++| .+... ....+..-+.|+.|+|++| .+++ +.+.+..-..|+.|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34455666666653 44311 1122344455666666666 2321 2222333445555555555554
No 345
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.40 E-value=0.019 Score=58.88 Aligned_cols=52 Identities=15% Similarity=0.108 Sum_probs=33.4
Q ss_pred HHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc
Q 046742 67 EVWRCLGE-EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD 119 (769)
Q Consensus 67 ~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 119 (769)
++++.+.. .+-..++|+|.+|+|||+|+.++++........+. ++++-++..
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 45566643 33457899999999999999999886521112333 345655543
No 346
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.40 E-value=0.023 Score=53.20 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+++|+|+.|+||||+++.++...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 478999999999999999998743
No 347
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.39 E-value=0.016 Score=53.85 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=18.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|.|.|+.|+||||+|+.++..+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999886
No 348
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.37 E-value=0.022 Score=53.02 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..|+|.|+.|+||||+|+.++..+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999876
No 349
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.37 E-value=0.026 Score=53.44 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhh
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNK 100 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 100 (769)
+...+|+|+|+.|+||||+|+.++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 44578999999999999999999875
No 350
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.32 E-value=0.025 Score=52.34 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 351
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.32 E-value=0.0059 Score=70.95 Aligned_cols=46 Identities=26% Similarity=0.218 Sum_probs=37.0
Q ss_pred CCCCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGE-------------EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+|.++..+.|.+.+.- ...+.+.++|++|+|||+||+.++...
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 4567888888888877642 133468899999999999999999987
No 352
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.31 E-value=0.025 Score=53.96 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+|+|+|+.|+|||||++.++...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999876
No 353
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.31 E-value=0.026 Score=53.38 Aligned_cols=26 Identities=23% Similarity=0.209 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
....|+|.|++|+||||+|+.++..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999986
No 354
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.30 E-value=0.12 Score=55.39 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+++|+|+.|+||||+++.++..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34699999999999999999999876
No 355
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.28 E-value=0.02 Score=54.02 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 356
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.27 E-value=0.026 Score=55.95 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|.|.|++|+||||+|+.++..+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999875
No 357
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.25 E-value=0.058 Score=46.78 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=20.2
Q ss_pred CccEEEccCCCCcccchhhhcCCCcceEEEecCC
Q 046742 415 SLITLFLNNNNLKVITDGFFQFMPSLKVLNLSNN 448 (769)
Q Consensus 415 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 448 (769)
+|++|+|++|.++.++...|..+++|++|+|++|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4556666666666665555555556666666555
No 358
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.24 E-value=0.025 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.|+|.|+.|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999986
No 359
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.24 E-value=0.028 Score=53.50 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+|+|+|++|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998865
No 360
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.24 E-value=0.024 Score=53.71 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+|+|+|+.|+||||+++.++. .
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C
Confidence 3789999999999999999998 5
No 361
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.23 E-value=0.025 Score=52.95 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|+|.|+.|+||||+|+.++..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999886
No 362
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.22 E-value=0.027 Score=53.77 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|+|.|+.|+||||+|+.++..+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 363
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.20 E-value=0.026 Score=57.47 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=30.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR 118 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 118 (769)
++.+||+|.|-|||||||.+..++.-+.. ... .+.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~--~Gk-kVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI--LGK-RVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH--TTC-CEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH--CCC-eEEEEecCC
Confidence 57789999999999999999998877631 122 356666653
No 364
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.19 E-value=0.028 Score=55.40 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
....+|+|.|+.|+||||+|+.++..+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999999876
No 365
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.18 E-value=0.027 Score=55.28 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|+|+|+.|+||||+++.++..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999776
No 366
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.17 E-value=0.029 Score=53.64 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|+|.|+.|+||||+|+.++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999886
No 367
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.16 E-value=0.027 Score=54.45 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...|+|.|++|+||||+|+.++..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999886
No 368
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.14 E-value=0.029 Score=50.98 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++++|+|+.|+||||++..+...+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999999887
No 369
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.13 E-value=0.026 Score=53.60 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHh
Q 046742 78 GIIGLYGMGEVGKTTLLTRINN 99 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~ 99 (769)
.+|+|+|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 370
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.11 E-value=0.027 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+|+|.|+.|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999976
No 371
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.09 E-value=0.029 Score=52.49 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+|+|+|+.|+||||+|+.+...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999999875
No 372
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.05 E-value=0.2 Score=65.00 Aligned_cols=198 Identities=14% Similarity=0.050 Sum_probs=0.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCC------------CcccccccH
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLY------------DQSWKNKRL 145 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~------------~~~~~~~~~ 145 (769)
+-|.++|++|+|||++|+.+.... .+ ...+.++.+...+...+++.+...+... .
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~--~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~-------- 1334 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SL--YDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD-------- 1334 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SS--CEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS--------
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CC--CceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCC--------
Q ss_pred HHHHHHHHHHHccCCEEEEEec--ccCcc------cccccCCCCCCCC------------CCcEEEEeeccC------Cc
Q 046742 146 EIKAADIFKILSRKKFVLLLDD--IWNRV------DLEKLGIPPMNTN------------GSSKIVFTTRSA------GG 199 (769)
Q Consensus 146 ~~~~~~l~~~l~~k~~LlVlDd--v~~~~------~~~~~~~~~~~~~------------~~~~iivTtR~~------~v 199 (769)
+++.++.+|| .-..+ ..+-++..+..++ .+..+|.++... .+
T Consensus 1335 ------------gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l 1402 (2695)
T 4akg_A 1335 ------------IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPM 1402 (2695)
T ss_dssp ------------SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCC
T ss_pred ------------CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccC
Q ss_pred -cccccccceEEcCCCCHHHHHHHHHhhhCCCccCCCCCHHHHHHHHHHHcCCchhHHHHHHHHhcCCCChhHHHHHHHH
Q 046742 200 -CGLMEAHRIFKVKCLEHKEAWELFQMKVGRETLESHLQIPELAEIVAKECDGLPLALITIGRAMAFKKTPQEWKDAIQV 278 (769)
Q Consensus 200 -~~~~~~~~~~~l~~l~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~~ 278 (769)
.+-.+....+.++..+.++-..+|.......- ...++....++.+++.+ .+-|..+.+.
T Consensus 1403 ~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~l-~~~~~v~~~~~~lv~at-------------------i~~y~~v~~~ 1462 (2695)
T 4akg_A 1403 SERFTRHAAILYLGYPSGKSLSQIYEIYYKAIF-KLVPEFRSYTEPFARAS-------------------VHLYNECKAR 1462 (2695)
T ss_dssp CHHHHTTEEEEECCCCTTTHHHHHHHHHHHHHT-TSSGGGGGGHHHHHHHH-------------------HHHHHHHHHH
T ss_pred ChhhhheeeEEEeCCCCHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHH-------------------HHHHHHHHHH
Q ss_pred HHhc--ccCCCChhhhhhHHhhhcCC-CCCCccchhHHHHHHhhc
Q 046742 279 LRRS--ASEFPGMDEIKSCFLYCCLF-PEDCDISKIDLIDCWIGE 320 (769)
Q Consensus 279 l~~~--~~~~~~~~~~k~cfl~~s~f-p~~~~i~~~~li~~w~a~ 320 (769)
+... .+..-.+.++-+.|-.+... ++...-+...++++|+-|
T Consensus 1463 ~~~~~k~HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw~HE 1507 (2695)
T 4akg_A 1463 YSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYE 1507 (2695)
T ss_dssp SCTTTCTTCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHH
T ss_pred cCCccCCCcccCHHHHHHHHHHHHhcCchhhhccHHHHHHHHHHH
No 373
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.05 E-value=0.05 Score=61.13 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=39.0
Q ss_pred CCCCCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 55 IPQTLGLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 55 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...++|.+..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred cceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 356799999998888887655 578999999999999999999987
No 374
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.05 E-value=0.026 Score=54.36 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
....|+|.|++|+||||+|+.++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999999987
No 375
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.04 E-value=0.29 Score=52.74 Aligned_cols=51 Identities=20% Similarity=0.177 Sum_probs=34.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIA 130 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 130 (769)
.-.++.|.|.+|+||||+|.+++.... ... -..++|+.... +..++...+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~-~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVA-TKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHH-HHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-HhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 345899999999999999999988762 111 12477776544 3455555543
No 376
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.04 E-value=0.028 Score=53.84 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 377
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.02 E-value=0.033 Score=52.74 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...|+|.|+.|+||||+++.++..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999876
No 378
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.01 E-value=0.03 Score=53.63 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 379
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.99 E-value=0.03 Score=55.20 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|+|+|+.|+||||+++.++..+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999886
No 380
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.99 E-value=0.025 Score=51.93 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRIN 98 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~ 98 (769)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3589999999999999999643
No 381
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.99 E-value=0.032 Score=53.68 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...|+|.|+.|+||||+|+.++..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999999987
No 382
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.85 E-value=0.033 Score=52.93 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
-.+++|+|+.|+|||||++.++.-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999876
No 383
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.80 E-value=0.24 Score=53.26 Aligned_cols=51 Identities=14% Similarity=-0.045 Sum_probs=35.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIAR 131 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 131 (769)
..++.|.|.+|+||||+|.+++.... ... -..++|++... +..++...++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a-~~~-g~~vl~~slE~--~~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAA-LKE-GVGVGIYSLEM--PAAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHH-HTT-CCCEEEEESSS--CHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH-HhC-CCeEEEEECCC--CHHHHHHHHHH
Confidence 45889999999999999999988762 111 12467776543 45566666554
No 384
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.74 E-value=0.032 Score=53.55 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
-.+++|+|+.|+|||||++.++...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999999865
No 385
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.72 E-value=0.19 Score=55.08 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=36.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARK 132 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 132 (769)
-.++.|.|.+|+||||+|.+++.... .+. =..++|++... +.+++...++..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a-~~~-g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWG-TAM-GKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHT-TTS-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHH-Hhc-CCcEEEEeccC--CHHHHHHHHHHH
Confidence 34789999999999999999998872 221 22467776544 456666665443
No 386
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.69 E-value=0.14 Score=54.53 Aligned_cols=98 Identities=15% Similarity=0.136 Sum_probs=55.7
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHH-HHHhhccCCCCCCc-EEEEEEeCcc-ccHHHHHHHHHHHhCCCCc----c
Q 046742 68 VWRCLGE-EHVGIIGLYGMGEVGKTTLLT-RINNKFSNTPNGFD-FVIWVVLSRD-LQIDRLQENIARKIGLYDQ----S 139 (769)
Q Consensus 68 l~~~L~~-~~~~vv~I~G~gGiGKTtLa~-~~~~~~~~~~~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~ 139 (769)
.++.+.. .+-..++|.|..|+|||+||. .+++.. . -+ .++++-++.. ....++.+++.+.-.+... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~---~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK---G--QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG---S--CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh---c--CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 3455533 233467899999999999965 666654 2 34 3466666654 4577777777764322210 0
Q ss_pred ccccc-HHHH-----HHHHHHHH--ccCCEEEEEecccC
Q 046742 140 WKNKR-LEIK-----AADIFKIL--SRKKFVLLLDDIWN 170 (769)
Q Consensus 140 ~~~~~-~~~~-----~~~l~~~l--~~k~~LlVlDdv~~ 170 (769)
....+ .... .-.+-+++ +++.+|+++||+..
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 01111 1111 11222333 47899999999853
No 387
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.66 E-value=0.042 Score=52.66 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-.+++|+|+.|+|||||++.++...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999999876
No 388
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.65 E-value=0.041 Score=49.64 Aligned_cols=27 Identities=30% Similarity=0.235 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..-.+++|+|+.|+|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344689999999999999999998875
No 389
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.64 E-value=0.059 Score=51.37 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
....+|+|.|+.|+||||+|+.++..+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 445689999999999999999999876
No 390
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.64 E-value=0.042 Score=53.83 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+|+|.|+.|+|||||++.++...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998865
No 391
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.61 E-value=0.021 Score=54.64 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+|+|.|+.|+||||+|+.+...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 392
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.59 E-value=0.12 Score=64.77 Aligned_cols=96 Identities=19% Similarity=0.120 Sum_probs=62.2
Q ss_pred HHHHHhc-c--CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcc---c
Q 046742 67 EVWRCLG-E--EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQS---W 140 (769)
Q Consensus 67 ~l~~~L~-~--~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~ 140 (769)
.|-..|. . ....++.|+|++|+||||||.+++.... .. -..++|++.....+.. .++.++...+. .
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a-~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~ 441 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-RE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCS 441 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH-TT--TCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEE
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHH-hc--CCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEe
Confidence 3444454 1 2456899999999999999999998873 12 2357888877766543 25666653321 1
Q ss_pred ccccHHHHHHHHHHHHc-cCCEEEEEecccC
Q 046742 141 KNKRLEIKAADIFKILS-RKKFVLLLDDIWN 170 (769)
Q Consensus 141 ~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~ 170 (769)
+..+.++..+.+.+..+ .+.-++|+|-+..
T Consensus 442 ~~~~~e~il~~~~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 442 QPDTGEQALEICDALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp CCSSHHHHHHHHHHHHHHTCCSEEEESCGGG
T ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEECCHHH
Confidence 23455666666665443 3456999998753
No 393
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.57 E-value=0.053 Score=55.19 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=30.8
Q ss_pred ccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc
Q 046742 73 GEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD 119 (769)
Q Consensus 73 ~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 119 (769)
.....++|+|+|-||+||||+|..++..+.+ . .. .+.-|+....
T Consensus 37 ~~~~~~vI~v~~KGGvGKTT~a~nLA~~La~-~-G~-~VlliD~D~~ 80 (307)
T 3end_A 37 KITGAKVFAVYGKGGIGKSTTSSNLSAAFSI-L-GK-RVLQIGCDPK 80 (307)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHHHH-T-TC-CEEEEEESSS
T ss_pred ccCCceEEEEECCCCccHHHHHHHHHHHHHH-C-CC-eEEEEeCCCC
Confidence 3356789999999999999999999888732 1 22 3666666543
No 394
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.56 E-value=0.043 Score=55.79 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
....+|+|+|+.|+|||||++.++.-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345699999999999999999998876
No 395
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.51 E-value=0.046 Score=55.31 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+++|+|++|+||||+++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35699999999999999999999877
No 396
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.50 E-value=0.094 Score=53.76 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=36.8
Q ss_pred HHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHH
Q 046742 70 RCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRL 125 (769)
Q Consensus 70 ~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 125 (769)
..+.+...+++.+.|-||+||||+|..++..+. ..-..+.-|+.....++...
T Consensus 9 ~~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D~~~~l~~~ 61 (334)
T 3iqw_A 9 SILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTDPAHNLSDA 61 (334)
T ss_dssp HHHHCTTCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECCSSCHHHHH
T ss_pred HHhcCCCeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECCCCCChhHH
Confidence 344455677888999999999999999998883 22234666766655444433
No 397
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.48 E-value=0.044 Score=55.71 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.++|+|+|+.|+||||||..++..+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3589999999999999999999987
No 398
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.46 E-value=0.046 Score=54.77 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.++|+|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3588999999999999999999886
No 399
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.46 E-value=0.042 Score=53.01 Aligned_cols=25 Identities=12% Similarity=0.267 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|+|.|++|+||||+|+.++..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999887
No 400
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.46 E-value=0.13 Score=54.99 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=55.0
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHH-HHHhhccCCCCCCc-EEEEEEeCcc-ccHHHHHHHHHHHhCCCCc----c
Q 046742 68 VWRCLGE-EHVGIIGLYGMGEVGKTTLLT-RINNKFSNTPNGFD-FVIWVVLSRD-LQIDRLQENIARKIGLYDQ----S 139 (769)
Q Consensus 68 l~~~L~~-~~~~vv~I~G~gGiGKTtLa~-~~~~~~~~~~~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~ 139 (769)
.++.+.. .+-..++|.|..|+|||+||. .+++.. .-+ .++++-++.. ....++.+++.+.-.+... .
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 3455533 233468899999999999965 566653 234 3466666654 4577777777653221110 0
Q ss_pred ccccc-HHHH-----HHHHHHHH--ccCCEEEEEecccC
Q 046742 140 WKNKR-LEIK-----AADIFKIL--SRKKFVLLLDDIWN 170 (769)
Q Consensus 140 ~~~~~-~~~~-----~~~l~~~l--~~k~~LlVlDdv~~ 170 (769)
....+ .... .-.+-+++ +++.+|+++||+..
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 01111 1111 11223333 47899999999853
No 401
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.43 E-value=0.043 Score=55.97 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+|+|.|+.|+||||||..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999987
No 402
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.33 E-value=0.051 Score=50.21 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|+|+|+.|+||||+++.++..+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999876
No 403
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.33 E-value=0.087 Score=54.31 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=36.0
Q ss_pred HHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHH
Q 046742 70 RCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDR 124 (769)
Q Consensus 70 ~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 124 (769)
..+.+...+++.+.|.||+||||+|..++..+... ..=..+.-|+.....++..
T Consensus 11 ~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~-~~g~~vllid~D~~~~l~~ 64 (348)
T 3io3_A 11 SIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALA-QPNEQFLLISTDPAHNLSD 64 (348)
T ss_dssp HHHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-CTTSCEEEEECCSSCHHHH
T ss_pred HHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHh-cCCCeEEEEECCCCCChHH
Confidence 34445667899999999999999999998877200 1122356666665444443
No 404
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.30 E-value=0.052 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHh
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINN 99 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~ 99 (769)
..+|+|.|+.|+||||+++.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 405
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.30 E-value=0.038 Score=54.10 Aligned_cols=25 Identities=28% Similarity=0.207 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|+|+|+.|+||||+++.++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999987
No 406
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.26 E-value=0.048 Score=54.61 Aligned_cols=24 Identities=29% Similarity=0.614 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHh
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINN 99 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~ 99 (769)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999983
No 407
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.26 E-value=0.032 Score=59.45 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+|+|+|++|+||||++..++..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998876
No 408
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.23 E-value=0.064 Score=52.04 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=27.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEE
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWV 114 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv 114 (769)
.-.+++|+|+.|+|||||++.++.-. ....+.+++
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~----~p~~G~I~~ 64 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD----KPTEGEVYI 64 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC----CCCceEEEE
Confidence 34589999999999999999998765 233455555
No 409
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.22 E-value=0.048 Score=55.19 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
++|+|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999987
No 410
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.21 E-value=0.093 Score=50.69 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
....|+|.|+.|+||||+++.++..+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34588999999999999999999998
No 411
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.20 E-value=0.12 Score=63.78 Aligned_cols=87 Identities=18% Similarity=0.117 Sum_probs=58.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCcc---cccccHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQS---WKNKRLEIKAADI 152 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 152 (769)
.-+++.|+|++|+||||||.+++.... ..-..++|++.....+.. .++.++...+. ....+.++..+.+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~---~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---HhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 456899999999999999999988762 122358898877766543 25666654322 1233456666666
Q ss_pred HHHHc-cCCEEEEEecccC
Q 046742 153 FKILS-RKKFVLLLDDIWN 170 (769)
Q Consensus 153 ~~~l~-~k~~LlVlDdv~~ 170 (769)
....+ .+.-++|+|-+..
T Consensus 454 ~~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTT
T ss_pred HHHHHhcCCCEEEECCHHH
Confidence 55543 3456999998754
No 412
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.18 E-value=0.085 Score=51.31 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.. .+++|+|+.|+|||||++.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 799999999999999999998765
No 413
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.16 E-value=0.29 Score=52.08 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=55.8
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHH-HHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCCc----cc
Q 046742 68 VWRCLGE-EHVGIIGLYGMGEVGKTTLLT-RINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYDQ----SW 140 (769)
Q Consensus 68 l~~~L~~-~~~~vv~I~G~gGiGKTtLa~-~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~~ 140 (769)
.++.+.. .+-..++|.|..|+|||+||. .+++.. +.-..++++-++.. ....++.+++.+.-.+... ..
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 3444432 233467899999999999974 566543 22224567777765 4577777877665322110 00
Q ss_pred cccc----------HHHHHHHHHHHHccCCEEEEEecccC
Q 046742 141 KNKR----------LEIKAADIFKILSRKKFVLLLDDIWN 170 (769)
Q Consensus 141 ~~~~----------~~~~~~~l~~~l~~k~~LlVlDdv~~ 170 (769)
...+ .-..++.+++ +++.+|+++||+..
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsltr 265 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDLSK 265 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecChHH
Confidence 1111 1122333333 47899999999854
No 414
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.15 E-value=0.057 Score=49.50 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.++++|+|+.|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998876
No 415
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.14 E-value=0.049 Score=52.07 Aligned_cols=23 Identities=35% Similarity=0.289 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.|+|.|+.|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 416
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.13 E-value=0.17 Score=53.36 Aligned_cols=93 Identities=11% Similarity=0.110 Sum_probs=53.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCc-EEEEEEeCc-cccHHHHHHHHHHHhCCCCc----ccccccHH-H---
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFD-FVIWVVLSR-DLQIDRLQENIARKIGLYDQ----SWKNKRLE-I--- 147 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~----~~~~~~~~-~--- 147 (769)
..++|.|..|+|||+|+.++++......++-+ .++++-++. .....++++++.+.-.+... .....+.. .
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 35789999999999999999988621101111 556666665 44677777776654211100 00111111 1
Q ss_pred --HHHHHHHHHc---cCCEEEEEecccC
Q 046742 148 --KAADIFKILS---RKKFVLLLDDIWN 170 (769)
Q Consensus 148 --~~~~l~~~l~---~k~~LlVlDdv~~ 170 (769)
..-.+-++++ ++.+|+++||+-.
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 1122334443 6889999999853
No 417
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.10 E-value=0.051 Score=51.56 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
++|+|.|+.|+||||+|+.++..+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999999986
No 418
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.10 E-value=0.049 Score=52.18 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..|+|.|++|+||||+|+.++..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999987
No 419
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.06 E-value=0.051 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.|+|.|+.|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999886
No 420
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.05 E-value=0.058 Score=52.32 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...|+|.|+.|+||||+|+.++..+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999987
No 421
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.02 E-value=0.085 Score=53.60 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
....+|+|+|+.|+|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344699999999999999999999876
No 422
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.01 E-value=0.13 Score=54.27 Aligned_cols=92 Identities=11% Similarity=0.169 Sum_probs=52.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCC--------CCCc-EEEEEEeCcc-ccHHHHHHHHHHHhCCCC-----ccccc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTP--------NGFD-FVIWVVLSRD-LQIDRLQENIARKIGLYD-----QSWKN 142 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~--------~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~~~~~ 142 (769)
..++|.|.+|+|||+|+.++++.. ... ++-+ .++++-++.. ....++.+++.+.-.+.. .....
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 457899999999999999999886 221 1112 5566666654 456777777655311110 00011
Q ss_pred ccHHH-----HHHHHHHHHc---cCCEEEEEecccC
Q 046742 143 KRLEI-----KAADIFKILS---RKKFVLLLDDIWN 170 (769)
Q Consensus 143 ~~~~~-----~~~~l~~~l~---~k~~LlVlDdv~~ 170 (769)
..... ..-.+-++++ ++.+|+++||+-.
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 11111 1122334443 6889999999853
No 423
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.01 E-value=0.057 Score=54.01 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++|+|.|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999999986
No 424
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.00 E-value=0.048 Score=50.59 Aligned_cols=24 Identities=17% Similarity=0.056 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+.|.|.|+.|+||||||.+++.+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 578899999999999999999875
No 425
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.95 E-value=0.036 Score=50.73 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+++|+|..|+|||||++.+..-+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998876
No 426
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.90 E-value=0.09 Score=56.94 Aligned_cols=45 Identities=11% Similarity=-0.027 Sum_probs=34.2
Q ss_pred CCCCchHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 57 QTLGLESTFDEVWRCLG--EEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 57 ~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-+.|.+..+.+.+... .....+|.+.|++|+||||+|+.++..+
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 34556666666666552 2344689999999999999999999998
No 427
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.89 E-value=0.11 Score=54.12 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=28.6
Q ss_pred HHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 65 FDEVWRCLG--EEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 65 ~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..++.+.+. ..+..+|+|+|.+|+||||++..++...
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 334444443 3567799999999999999999998776
No 428
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.88 E-value=0.077 Score=51.07 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
-.+++|+|+.|+|||||++.++.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998765
No 429
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.87 E-value=0.05 Score=50.75 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+++|+|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998876
No 430
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=92.85 E-value=0.16 Score=53.80 Aligned_cols=101 Identities=9% Similarity=0.059 Sum_probs=57.0
Q ss_pred HHHhcc-CCccEEEEEcCCCCcHHHHHHHHHhhccCCCC-CCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCCc----ccc
Q 046742 69 WRCLGE-EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPN-GFDFVIWVVLSRD-LQIDRLQENIARKIGLYDQ----SWK 141 (769)
Q Consensus 69 ~~~L~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~-~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~~~ 141 (769)
++.+.. .+-..++|.|.+|+|||+|+.+++......+. .=+.++++-++.. ....++++++...-.+... ...
T Consensus 143 ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ts 222 (469)
T 2c61_A 143 IDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLA 222 (469)
T ss_dssp HHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEET
T ss_pred eeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECC
Confidence 444432 22345778999999999999999998621111 1135566666554 4577778777764221110 001
Q ss_pred cccHH------HHHHHHHHHHc---cCCEEEEEeccc
Q 046742 142 NKRLE------IKAADIFKILS---RKKFVLLLDDIW 169 (769)
Q Consensus 142 ~~~~~------~~~~~l~~~l~---~k~~LlVlDdv~ 169 (769)
..+.. ...-.+-++++ ++.+|+++||+.
T Consensus 223 d~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 223 DDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 11111 11112234443 689999999974
No 431
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.85 E-value=0.038 Score=53.56 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=16.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH-hhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRIN-NKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~-~~~ 101 (769)
..+++|+|+.|+|||||++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3589999999999999999999 654
No 432
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.83 E-value=0.12 Score=49.64 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...|+|.|+.|+||||+++.+++.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999987
No 433
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.79 E-value=0.14 Score=49.55 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=33.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIA 130 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 130 (769)
...|+|.|+.|+||||+++.++..+. ...+..+....-.......+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~--~~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ--QNGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH--HTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCeeeeecCCCCCHHHHHHHHHH
Confidence 35899999999999999999999873 23455344443333222334444443
No 434
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.76 E-value=0.058 Score=52.90 Aligned_cols=23 Identities=26% Similarity=0.169 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHh
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINN 99 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~ 99 (769)
-.+++|+|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999883
No 435
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.74 E-value=0.081 Score=52.58 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
-.+++|+|+.|+|||||++.++.-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3589999999999999999998765
No 436
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.70 E-value=0.082 Score=52.21 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998765
No 437
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.68 E-value=0.065 Score=50.70 Aligned_cols=42 Identities=24% Similarity=0.151 Sum_probs=21.8
Q ss_pred CchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 60 GLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 60 Gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
|++...+.+.+.......-.|+|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 444445555555444455578899999999999999998654
No 438
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.64 E-value=0.14 Score=48.71 Aligned_cols=52 Identities=15% Similarity=0.161 Sum_probs=34.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHH
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIAR 131 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 131 (769)
..|+|.|+.|+||||+++.+++.+. ...+..+++..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE--QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH--HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999999873 233423344443333334555555554
No 439
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.61 E-value=0.07 Score=53.91 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+++|+|+.|+||||+++.++..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999876
No 440
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.56 E-value=0.12 Score=53.35 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..+++|+|+.|+||||+++.++..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4589999999999999999999876
No 441
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.50 E-value=0.13 Score=54.97 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=50.6
Q ss_pred cEEEEEcCCCCcHHHHHH-HHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHHHHhCCCC--------cc--c----c
Q 046742 78 GIIGLYGMGEVGKTTLLT-RINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIARKIGLYD--------QS--W----K 141 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~-~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~--------~~--~----~ 141 (769)
..++|.|..|+|||+||. .+++.. ...+ .++++-++.. ....++.+++.+.-.+.. +. . .
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~---~~dv-~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ---GQNV-ICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC---TTTC-EEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh---cCCc-EEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 467899999999999965 666654 2222 3466666654 456677766654321100 00 0 0
Q ss_pred cccHHHHHHHHHHHHccCCEEEEEecccC
Q 046742 142 NKRLEIKAADIFKILSRKKFVLLLDDIWN 170 (769)
Q Consensus 142 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 170 (769)
....-..++.+++ +++.+|+++||+..
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dsltr 266 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecHHH
Confidence 1112233444444 58999999999743
No 442
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.46 E-value=0.097 Score=49.79 Aligned_cols=38 Identities=18% Similarity=0.059 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR 118 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 118 (769)
-.|.+.|.||+||||+|..++.... ...++. ..+.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~--~~G~~V-~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL--RQGVRV-MAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH--HTTCCE-EEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH--HCCCCE-EEEEeCC
Confidence 3578999999999999999998873 233443 4444443
No 443
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.45 E-value=0.21 Score=53.36 Aligned_cols=103 Identities=14% Similarity=0.123 Sum_probs=55.9
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHH-HHHhhccC---CCCCCc-EEEEEEeCcc-ccHHHHHHHHHHHhCCCCc--
Q 046742 68 VWRCLGE-EHVGIIGLYGMGEVGKTTLLT-RINNKFSN---TPNGFD-FVIWVVLSRD-LQIDRLQENIARKIGLYDQ-- 138 (769)
Q Consensus 68 l~~~L~~-~~~~vv~I~G~gGiGKTtLa~-~~~~~~~~---~~~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~-- 138 (769)
.++.+.. .+-..++|.|..|+|||+||. .+++.... ...+-+ .++++-++.. ....++.+++.+.-.+...
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 3455533 233467899999999999954 56665410 001233 4667777654 4577777777664222110
Q ss_pred --cccccc-HHHH-----HHHHHHHH--ccCCEEEEEecccC
Q 046742 139 --SWKNKR-LEIK-----AADIFKIL--SRKKFVLLLDDIWN 170 (769)
Q Consensus 139 --~~~~~~-~~~~-----~~~l~~~l--~~k~~LlVlDdv~~ 170 (769)
.....+ .... .-.+-+++ +++.+|+++||+..
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 001111 1111 11222333 47899999999853
No 444
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.45 E-value=0.095 Score=51.24 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
-.+++|+|+.|+|||||++.++.-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998765
No 445
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.43 E-value=0.18 Score=47.94 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=25.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEE
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFV 111 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~ 111 (769)
..|+|.|+.|+||||+++.+++.+. ...+..+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~v~ 38 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR--ERGIEVQ 38 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCcc
Confidence 5788999999999999999999883 2345543
No 446
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.41 E-value=0.037 Score=55.66 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=20.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+..+|+|.|+.|+||||+|+.+...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998865
No 447
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.41 E-value=0.18 Score=62.26 Aligned_cols=87 Identities=18% Similarity=0.124 Sum_probs=61.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHHHhCCCCccc---ccccHHHHHHHH
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIARKIGLYDQSW---KNKRLEIKAADI 152 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 152 (769)
+-++|-|+|+.|+||||||.++.... +..=...+|++.....+..- ++.+++..+.. +....++.+..+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 44689999999999999999998776 23334578998887766653 77887655321 334446666666
Q ss_pred HHHHcc-CCEEEEEecccC
Q 046742 153 FKILSR-KKFVLLLDDIWN 170 (769)
Q Consensus 153 ~~~l~~-k~~LlVlDdv~~ 170 (769)
.+.++. ..-++|+|-|..
T Consensus 1502 ~~~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTT
T ss_pred HHHHHcCCCCEEEEccHHh
Confidence 666664 445899998743
No 448
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.40 E-value=0.067 Score=56.93 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
....+|.|+|++|+||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999999876
No 449
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.39 E-value=0.096 Score=51.66 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44689999999999999999998765
No 450
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.35 E-value=0.1 Score=50.86 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
-.+++|+|+.|+|||||.+.++.-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998765
No 451
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.30 E-value=0.087 Score=50.16 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
-.+++|+|+.|+|||||++.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998765
No 452
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.27 E-value=0.29 Score=52.35 Aligned_cols=50 Identities=14% Similarity=0.064 Sum_probs=34.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHH
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIAR 131 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 131 (769)
..++.|.|.+|+||||+|.+++.... .+ =..++|++... +.+++...+..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a-~~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMS-DN--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHH-HT--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHH-Hc--CCEEEEEECCC--CHHHHHHHHHH
Confidence 35899999999999999999998862 12 23567765443 34445554443
No 453
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.25 E-value=0.1 Score=50.29 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33589999999999999999998876
No 454
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.22 E-value=0.092 Score=51.95 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34589999999999999999998865
No 455
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.20 E-value=0.1 Score=51.74 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44589999999999999999998765
No 456
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.20 E-value=0.11 Score=51.30 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
-.+++|+|+.|+|||||.+.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998765
No 457
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.19 E-value=0.14 Score=47.62 Aligned_cols=117 Identities=17% Similarity=0.105 Sum_probs=65.4
Q ss_pred hcCCCcceEEEecCCCCCcc-----ccccccCCcCCCEEeccCCCCc-----ccchhhhcCCCCcEEecCCCcCcCccCc
Q 046742 434 FQFMPSLKVLNLSNNQSLKQ-----LPSGISRLVSLQHLNLSLTNIK-----ELPEELKALVNLKCLNLDYTKSLCRIPR 503 (769)
Q Consensus 434 ~~~l~~L~~L~L~~~~~~~~-----lp~~i~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~l~~~p~ 503 (769)
+..-+.|+.|+|+++..++. +-+.+..-.+|+.|+|++|.|. .+-..+..=+.|++|+|++|. ++.-..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHH
Confidence 45566788888877523332 3445555667888888888776 244445556778888888776 332111
Q ss_pred ----ccccCCcccceeeeecccc-ccccchhhhHHHHhhcCcCCcEEEEEecc
Q 046742 504 ----HLISNFSMLYILRIVDCHY-FEEVENCEVLMEEVLLMENLNVLGINLTS 551 (769)
Q Consensus 504 ----~~i~~L~~L~~L~l~~~~~-~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 551 (769)
..+..-+.|++|++++|.. .-.........+.+..-+.|..|+++.+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 1144445688888875422 11111111233445555667777666443
No 458
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.15 E-value=0.082 Score=49.39 Aligned_cols=25 Identities=32% Similarity=0.386 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998865
No 459
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.15 E-value=0.11 Score=51.10 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998765
No 460
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.15 E-value=0.14 Score=48.93 Aligned_cols=56 Identities=18% Similarity=0.133 Sum_probs=34.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHHH
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIAR 131 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 131 (769)
.....|+|.|+.|+||||+++.+.+.+. ....+..+....-.......+.+++++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~-~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS-EIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH-HHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh-hccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 3456899999999999999999999873 1023444432333332233444555544
No 461
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.11 E-value=0.058 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.121 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhh
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNK 100 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~ 100 (769)
.+++|+|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998865
No 462
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.07 E-value=0.45 Score=51.22 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=41.2
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccc-cHHHHHHHHH
Q 046742 68 VWRCLGE-EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDL-QIDRLQENIA 130 (769)
Q Consensus 68 l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~ 130 (769)
.++.+.. .+-..++|.|..|+|||+|+.++++.. +-+.++++-++... ...++++++-
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~~ 276 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEFP 276 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHTT
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHHH
Confidence 4555543 334578999999999999999998864 12467888777654 5666776653
No 463
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.04 E-value=0.083 Score=53.50 Aligned_cols=24 Identities=29% Similarity=0.181 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+|.|.|++|+||||+|+.++...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999999864
No 464
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.02 E-value=0.16 Score=47.31 Aligned_cols=26 Identities=31% Similarity=0.254 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999998764
No 465
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.00 E-value=0.089 Score=51.97 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+..++++.|.||+||||++..++...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999877
No 466
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.98 E-value=0.19 Score=54.33 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=31.0
Q ss_pred CchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 60 GLESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 60 Gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+..+.++.+...+.+.. +.+.|.|.+|+|||+++..++..+
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34445555656665433 489999999999999999998887
No 467
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.97 E-value=0.16 Score=49.62 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=28.1
Q ss_pred HHHHHHHhccC--CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 65 FDEVWRCLGEE--HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 65 ~~~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..-+..|+... ....|.++|++|+|||.+|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 33455666543 24579999999999999999999874
No 468
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.96 E-value=0.073 Score=51.72 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998765
No 469
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.92 E-value=0.25 Score=46.65 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=32.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCccccHHHHHHHHH
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRDLQIDRLQENIA 130 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 130 (769)
..|+|-|+.|+||||+++.+++.+ ...++. ++..-.......+.+++++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L---~~~~~v-~~~~eP~~t~~g~~ir~~l 51 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL---VKDYDV-IMTREPGGVPTGEEIRKIV 51 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH---TTTSCE-EEEESSTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH---HCCCCE-EEeeCCCCChHHHHHHHHH
Confidence 468899999999999999999998 234543 3333333333444444444
No 470
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.89 E-value=0.56 Score=45.26 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=52.8
Q ss_pred HHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCC-cEEEEEEeCccccHHHHHHHHHHHhCCCCc------
Q 046742 66 DEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGF-DFVIWVVLSRDLQIDRLQENIARKIGLYDQ------ 138 (769)
Q Consensus 66 ~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------ 138 (769)
+++...+.++ +.+.|.|+.|+||||++..+.-+.....+.. ...+.+......-..++.+.+...++....
T Consensus 67 ~~~i~~i~~g--~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~ 144 (235)
T 3llm_A 67 SEILEAISQN--SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYS 144 (235)
T ss_dssp HHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEE
T ss_pred HHHHHHHhcC--CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEe
Confidence 3444444333 5889999999999987666543320111221 223334444444445555666554442210
Q ss_pred ------------ccccccHHHHHHHHHHHHccCCEEEEEecccC
Q 046742 139 ------------SWKNKRLEIKAADIFKILSRKKFVLLLDDIWN 170 (769)
Q Consensus 139 ------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 170 (769)
...-.+...+...+.+.+. +--++|+|+++.
T Consensus 145 ~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~-~~~~lVlDEah~ 187 (235)
T 3llm_A 145 VRFESILPRPHASIMFCTVGVLLRKLEAGIR-GISHVIVDEIHE 187 (235)
T ss_dssp ETTEEECCCSSSEEEEEEHHHHHHHHHHCCT-TCCEEEECCTTS
T ss_pred echhhccCCCCCeEEEECHHHHHHHHHhhhc-CCcEEEEECCcc
Confidence 0111244555555544332 234889999986
No 471
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.83 E-value=0.09 Score=51.56 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhh
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNK 100 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~ 100 (769)
-.+++|+|+.|+|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999884
No 472
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.83 E-value=0.12 Score=51.47 Aligned_cols=26 Identities=38% Similarity=0.400 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999998875
No 473
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=91.82 E-value=1.5 Score=42.19 Aligned_cols=38 Identities=16% Similarity=-0.007 Sum_probs=27.2
Q ss_pred chHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 61 LESTFDEVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 61 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
|+...+.+..++... -+.|+|+.|.|||.+|..++...
T Consensus 95 ~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 454455555554432 37789999999999999988775
No 474
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.80 E-value=0.12 Score=51.07 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999998765
No 475
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.76 E-value=0.1 Score=50.83 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...|+|.|+.|+||||+++.++..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999999987
No 476
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.76 E-value=0.11 Score=50.53 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+|+|+|+.|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999876
No 477
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.72 E-value=0.094 Score=47.53 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhh
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNK 100 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~ 100 (769)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 478
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.71 E-value=0.055 Score=60.42 Aligned_cols=46 Identities=17% Similarity=0.042 Sum_probs=34.9
Q ss_pred CCCCCchHHHHHHHHHhccCCcc-----------EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 56 PQTLGLESTFDEVWRCLGEEHVG-----------IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 56 ~~~vGr~~~~~~l~~~L~~~~~~-----------vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+.++|.+.....+...+.....+ -|.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 56789998777665555433211 47899999999999999998876
No 479
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.69 E-value=0.11 Score=46.70 Aligned_cols=24 Identities=29% Similarity=0.420 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+.|+|+|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998764
No 480
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.66 E-value=0.091 Score=54.68 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
++|+|.|+.|+||||||..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 588999999999999999999987
No 481
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.65 E-value=0.095 Score=51.92 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhh
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNK 100 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~ 100 (769)
.-.+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4458999999999999999999885
No 482
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.60 E-value=0.11 Score=52.24 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
+.-.+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344689999999999999999998765
No 483
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.59 E-value=0.1 Score=48.97 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
-.|+|+|..|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998864
No 484
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.56 E-value=0.52 Score=50.93 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=41.0
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCcc-ccHHHHHHHHH
Q 046742 68 VWRCLGE-EHVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSRD-LQIDRLQENIA 130 (769)
Q Consensus 68 l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~ 130 (769)
.++.|.. .+-..++|.|..|+|||+|+.++++.. +-+.++++-++.. ....++++++-
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~~ 281 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEFP 281 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHTT
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHHH
Confidence 4555543 344578999999999999999999875 1256777777765 45666666543
No 485
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.52 E-value=0.098 Score=52.32 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
-.++.|+|++|+|||||+.+++...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998755
No 486
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.46 E-value=0.079 Score=49.09 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 046742 79 IIGLYGMGEVGKTTLLTRINNK 100 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~ 100 (769)
.|+|+|.+|+|||||+..++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 487
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.43 E-value=0.16 Score=52.31 Aligned_cols=35 Identities=26% Similarity=0.103 Sum_probs=27.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEE
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWV 114 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv 114 (769)
.-.+++|+|+.|+|||||.+.++.-. ....+.+++
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~----~p~~G~I~i 63 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE----QPDSGEISL 63 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC----CCCCcEEEE
Confidence 33589999999999999999999876 223455554
No 488
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.42 E-value=0.089 Score=51.35 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998654
No 489
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.41 E-value=0.12 Score=50.64 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 77 VGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 77 ~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
-.+++|+|+.|+|||||++.++.-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999998876
No 490
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.37 E-value=0.12 Score=53.84 Aligned_cols=27 Identities=22% Similarity=0.091 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
....+++|+|+.|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455699999999999999999999875
No 491
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.36 E-value=0.12 Score=50.88 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 75 EHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 75 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
..-.+++|+|+.|+||||+++.+....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 344689999999999999999988765
No 492
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.24 E-value=0.095 Score=51.68 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34589999999999999999998765
No 493
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.22 E-value=0.16 Score=50.44 Aligned_cols=38 Identities=21% Similarity=0.374 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCc
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNKFSNTPNGFDFVIWVVLSR 118 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 118 (769)
++|+|.|-||+||||+|..++..+. . ... .+.-|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la-~-~G~-~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH-A-MGK-TIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH-T-TTC-CEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH-H-CCC-cEEEEcCCC
Confidence 5788899999999999999998873 2 222 356666553
No 494
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.19 E-value=0.13 Score=46.32 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhh
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNK 100 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~ 100 (769)
..|.|.|.+|+||||+|.++..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46789999999999999999875
No 495
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.19 E-value=0.12 Score=52.13 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.-.+++|+|+.|+|||||++.++.-+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 44689999999999999999988765
No 496
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.13 E-value=0.11 Score=46.56 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 046742 79 IIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 79 vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.|+|+|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998764
No 497
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.12 E-value=0.17 Score=55.57 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=29.6
Q ss_pred CchHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 60 GLESTFDEVWRCLG--EEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 60 Gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+.+....+..... -....+++|+|+.|+|||||++.++...
T Consensus 350 ~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 350 SFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhh
Confidence 34444444444331 1234689999999999999999999987
No 498
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.07 E-value=0.34 Score=51.17 Aligned_cols=34 Identities=26% Similarity=0.254 Sum_probs=27.0
Q ss_pred HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 67 EVWRCLGEEHVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 67 ~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
.+.+.+ .....+++|+|+.|+||||+++.+....
T Consensus 158 ~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 344443 3455689999999999999999999877
No 499
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.03 E-value=0.13 Score=47.60 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhh
Q 046742 78 GIIGLYGMGEVGKTTLLTRINNK 100 (769)
Q Consensus 78 ~vv~I~G~gGiGKTtLa~~~~~~ 100 (769)
..|+|+|.+|+|||||+..+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 500
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.03 E-value=0.15 Score=53.67 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhc
Q 046742 76 HVGIIGLYGMGEVGKTTLLTRINNKF 101 (769)
Q Consensus 76 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 101 (769)
...+++|+|+.|+|||||.+.++...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 45699999999999999999999843
Done!