Your job contains 1 sequence.
>046743
MGEKPPHTYGNSSIYNIAGTNASANDIEAAAREAVLREQEIETQKIIQGQREEGVVGASH
HDGADIFAKRSDPNALKEHLLKMTSEHRAEMALKRGKPTGPNQGNTEIGNGYGVPGGVAY
YNVQSTAITRTQGAGNDGMGQRNLKLDSESEQKPVTKELPEYLKQRLRARGILKDTSENG
DPPRINNKLESTSAQLDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQ
TPSHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGSSKPVASEQSDSNASRNTTNGI
WDNPSSGLERCLHCGGWGVGLVQTWGYCNHCTRVLNLPQCQYLLTSLNKQQQTSNSANAK
EDSGKNGPKQSWKPPMGRGNRKDSRKRAFSEDDELDPMDPSSYSDAPRGGWVVGLKGVQP
RAADTTATGPLFQQRPYPSPGAVLRKNAEIASQSKKSSPHFTAISKRGDGSDGLGEAD
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 046743
(478 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2063250 - symbol:AT2G41020 species:3702 "Arabi... 1238 4.8e-126 1
UNIPROTKB|E2RHX2 - symbol:PQBP1 "Uncharacterized protein"... 248 8.3e-30 2
UNIPROTKB|G3FP13 - symbol:PQBP1 "Polyglutamine binding pr... 248 8.3e-30 2
UNIPROTKB|Q2HJC9 - symbol:PQBP1 "Polyglutamine-binding pr... 248 4.5e-29 2
MGI|MGI:1859638 - symbol:Pqbp1 "polyglutamine binding pro... 246 9.6e-29 2
RGD|1549750 - symbol:Pqbp1 "polyglutamine binding protein... 246 4.1e-28 2
UNIPROTKB|O60828 - symbol:PQBP1 "Polyglutamine-binding pr... 244 4.3e-28 2
WB|WBGene00020647 - symbol:pqbp-1.1 species:6239 "Caenorh... 200 8.4e-21 2
UNIPROTKB|Q5F457 - symbol:WBP4 "WW domain-binding protein... 184 2.4e-11 1
UNIPROTKB|F1NXG2 - symbol:WBP4 "WW domain-binding protein... 181 5.2e-11 1
UNIPROTKB|F1PCW3 - symbol:WBP4 "Uncharacterized protein" ... 152 7.7e-08 1
UNIPROTKB|C9JQA1 - symbol:PQBP1 "Polyglutamine-binding pr... 97 8.1e-08 2
SGD|S000001495 - symbol:PRP40 "U1 snRNP protein involved ... 155 8.3e-08 1
RGD|620033 - symbol:Wbp4 "WW domain binding protein 4" sp... 147 2.8e-07 1
TAIR|locus:2091171 - symbol:PRP40B "pre-mRNA-processing p... 146 3.3e-07 2
MGI|MGI:109568 - symbol:Wbp4 "WW domain binding protein 4... 141 1.3e-06 1
UNIPROTKB|Q17QQ6 - symbol:WBP4 "Uncharacterized protein" ... 141 1.5e-06 1
UNIPROTKB|G3MZC7 - symbol:PRPF40A "Uncharacterized protei... 137 2.3e-06 2
UNIPROTKB|F1RQH2 - symbol:PRPF40A "Uncharacterized protei... 137 2.9e-06 2
UNIPROTKB|H0YG38 - symbol:PRPF40A "Pre-mRNA-processing fa... 134 6.8e-06 1
UNIPROTKB|F1NQH4 - symbol:PRPF40A "Uncharacterized protei... 135 7.9e-06 2
UNIPROTKB|B7Z6T0 - symbol:ARHGAP27 "Rho GTPase-activating... 134 9.0e-06 1
UNIPROTKB|O75400 - symbol:PRPF40A "Pre-mRNA-processing fa... 132 9.9e-06 2
RGD|1311401 - symbol:Prpf40a "PRP40 pre-mRNA processing f... 132 1.2e-05 2
MGI|MGI:1860512 - symbol:Prpf40a "PRP40 pre-mRNA processi... 132 1.6e-05 2
UNIPROTKB|K7EMU7 - symbol:PIN1 "Peptidyl-prolyl cis-trans... 110 1.6e-05 1
UNIPROTKB|O15428 - symbol:PIN1P1 "Putative PIN1-like prot... 110 1.6e-05 1
RGD|735202 - symbol:Arhgap27 "Rho GTPase activating prote... 136 1.7e-05 1
UNIPROTKB|Q6TLK4 - symbol:Arhgap27 "Rho GTPase-activating... 136 1.7e-05 1
UNIPROTKB|F5H578 - symbol:PRPF40A "Pre-mRNA-processing fa... 132 1.8e-05 1
UNIPROTKB|E9PNT2 - symbol:ARHGAP27 "Rho GTPase-activating... 134 2.0e-05 1
UNIPROTKB|B7Z4M2 - symbol:WBP4 "cDNA FLJ52917, highly sim... 129 2.6e-05 1
UNIPROTKB|F8WBX1 - symbol:ARHGAP27 "Rho GTPase-activating... 134 2.8e-05 1
UNIPROTKB|E9PIR1 - symbol:ARHGAP27 "Rho GTPase-activating... 134 2.8e-05 1
UNIPROTKB|O75554 - symbol:WBP4 "WW domain-binding protein... 129 2.9e-05 1
UNIPROTKB|Q6ZUM4 - symbol:ARHGAP27 "Rho GTPase-activating... 134 2.9e-05 1
RGD|1309927 - symbol:Wwox "WW domain-containing oxidoredu... 106 4.3e-05 1
TAIR|locus:2194894 - symbol:PRP40A "pre-mRNA-processing p... 130 5.3e-05 2
UNIPROTKB|F1RR27 - symbol:ARHGAP27 "Uncharacterized prote... 129 8.8e-05 2
ZFIN|ZDB-GENE-030131-274 - symbol:prpf40a "PRP40 pre-mRNA... 136 0.00012 2
UNIPROTKB|Q5BIN5 - symbol:PIN1 "Peptidyl-prolyl cis-trans... 110 0.00021 1
UNIPROTKB|F1P6C1 - symbol:PIN1 "Uncharacterized protein" ... 110 0.00021 1
UNIPROTKB|Q13526 - symbol:PIN1 "Peptidyl-prolyl cis-trans... 110 0.00021 1
UNIPROTKB|F1S3G5 - symbol:PIN1 "Peptidyl-prolyl cis-trans... 110 0.00021 1
UNIPROTKB|F1MMB0 - symbol:ARHGAP27 "Uncharacterized prote... 130 0.00027 2
UNIPROTKB|J3KTB1 - symbol:GAS7 "Growth arrest-specific pr... 98 0.00031 1
UNIPROTKB|A6QPU2 - symbol:ARHGAP12 "ARHGAP12 protein" spe... 120 0.00084 1
ZFIN|ZDB-GENE-050522-342 - symbol:zgc:112384 "zgc:112384"... 121 0.00085 2
MGI|MGI:1925583 - symbol:Prpf40b "PRP40 pre-mRNA processi... 111 0.00087 2
UNIPROTKB|Q6NWY9 - symbol:PRPF40B "Pre-mRNA-processing fa... 109 0.00090 2
MGI|MGI:1346036 - symbol:Pin1 "protein (peptidyl-prolyl c... 106 0.00091 1
>TAIR|locus:2063250 [details] [associations]
symbol:AT2G41020 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000956 "nuclear-transcribed
mRNA catabolic process" evidence=RCA] [GO:0006635 "fatty acid
beta-oxidation" evidence=RCA] [GO:0016558 "protein import into
peroxisome matrix" evidence=RCA] [GO:0019722 "calcium-mediated
signaling" evidence=RCA] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 EMBL:CP002685
GenomeReviews:CT485783_GR Gene3D:2.20.70.10 SUPFAM:SSF51045
KO:K12865 EMBL:AK175976 IPI:IPI00530713 RefSeq:NP_181635.2
UniGene:At.42880 ProteinModelPortal:Q67ZZ1 SMR:Q67ZZ1 PRIDE:Q67ZZ1
EnsemblPlants:AT2G41020.1 GeneID:818702 KEGG:ath:AT2G41020
TAIR:At2g41020 HOGENOM:HOG000030739 InParanoid:Q67ZZ1 OMA:APRGGWV
PhylomeDB:Q67ZZ1 ProtClustDB:CLSN2680170 Genevestigator:Q67ZZ1
Uniprot:Q67ZZ1
Length = 463
Score = 1238 (440.9 bits), Expect = 4.8e-126, P = 4.8e-126
Identities = 272/495 (54%), Positives = 328/495 (66%)
Query: 1 MGEKPPHTYGNSSIYNIAGTNAS-----ANDIEAAAREAVLREQEIETQKIIQGQREEG- 54
MGE+ + SS+ + G +S + DIE+AA A+LREQEIETQKIIQGQRE G
Sbjct: 1 MGEELQYQQNGSSVTSNYGYGSSLAYDQSQDIESAANTALLREQEIETQKIIQGQREAGT 60
Query: 55 -VVGASHHDGADIFAKRSDPNALKEHLLKMTSEHRAEMALKRGKPTGP-NQGNTEIGNGY 112
V G S H+ DI R+DPNALKEHLLK T+ HRAE A KRG +GN ++GNGY
Sbjct: 61 SVAGDSKHN-TDILRDRADPNALKEHLLKFTANHRAEAAAKRGGSVSTCGEGNVDVGNGY 119
Query: 113 GVPGGVAYYNVQSTAITRTQGAGNDGMGQRNLKLDSESEQKPVTKELPEYLKQRLRARGI 172
G+PGGVAY AG+ +L + E + LPEYLKQ+L+ARGI
Sbjct: 120 GIPGGVAY-------------AGHS-------ELSGKPEPTNASNNLPEYLKQKLKARGI 159
Query: 173 LKD-----TSENGDPPRINNKLESTSAQLDDREKLLPGWVEAKDPASGASYYYNESTGKS 227
L+D TS D ++ ++T + L GWV+AKDPASGA+YYYN+ TG
Sbjct: 160 LRDGAGAVTSNPEDTSAVSWNRQATLPFQANASTLPLGWVDAKDPASGATYYYNQHTGTC 219
Query: 228 QWERPVETS-SRAQTPSHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGSSKPVASE 286
QWERPVE S + + P LS E+WIE DE SGHKY+YN RTHVSQW P S + A+
Sbjct: 220 QWERPVELSYATSSAPPVLS-KEEWIETFDEASGHKYFYNTRTHVSQWEPPASLQKPAAT 278
Query: 287 QSDSNASRNTTNGIWDNPSSGLERCLHCGGWGVGLVQTWGYCNHCTRVLNLPQCQYLLTS 346
S++ +++T NG ++P S L RC CGGWGVGLVQ WGYC HCTRV NLP+ Q+L
Sbjct: 279 NSNNAVTQSTANGKGEHPPSQLPRCSGCGGWGVGLVQRWGYCVHCTRVFNLPEKQFLPAH 338
Query: 347 LNKQQQTSNSANAKEDSGKNGPKQ--SWKPPMGRGNRKDSRKRAFSEDDELDPMDPSSYS 404
LN + NA DSG+ P Q S KPPM + +KRA +EDDELDPMDPSSYS
Sbjct: 339 LN------HFTNAG-DSGQKDPNQRSSSKPPM---KKVIGKKRAHAEDDELDPMDPSSYS 388
Query: 405 DAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIAS-QSKKSSPHFTA 463
DAPRGGWVVGLKGVQPRAADTTA+GPLFQQRPYPSPGAVLR+NAE+AS Q KK + FT
Sbjct: 389 DAPRGGWVVGLKGVQPRAADTTASGPLFQQRPYPSPGAVLRRNAEVASSQKKKPNSQFTE 448
Query: 464 ISKRGDGSDGLGEAD 478
I+KRGDGSDGLG+AD
Sbjct: 449 ITKRGDGSDGLGDAD 463
>UNIPROTKB|E2RHX2 [details] [associations]
symbol:PQBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071598 "neuronal ribonucleoprotein granule"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR001202 PROSITE:PS50020
SMART:SM00456 GO:GO:0005634 GO:GO:0005737 SUPFAM:SSF51045
GO:GO:0034063 CTD:10084 GeneTree:ENSGT00390000001905 KO:K12865
EMBL:AAEX03026338 RefSeq:XP_851217.2 Ensembl:ENSCAFT00000024826
GeneID:480909 KEGG:cfa:480909 NextBio:20855823 Uniprot:E2RHX2
Length = 265
Score = 248 (92.4 bits), Expect = 8.3e-30, Sum P(2) = 8.3e-30
Identities = 51/75 (68%), Positives = 58/75 (77%)
Query: 384 SRKRAFSEDDELDPMDPSSYSDAPRGGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPG 441
S+K A +D+ELDPMDPSSYSDAPRG W GL + ADTTA GPLFQQRPYPSPG
Sbjct: 190 SKKAASRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPG 249
Query: 442 AVLRKNAEIASQSKK 456
AVLR NAE AS++K+
Sbjct: 250 AVLRANAE-ASRTKQ 263
Score = 109 (43.4 bits), Expect = 8.3e-30, Sum P(2) = 8.3e-30
Identities = 41/144 (28%), Positives = 59/144 (40%)
Query: 159 LPEYLKQRLRARGILKDTSENGDPPRINNKLESTSAQLDDR--EKLLPGWVEAKDPASGA 216
LP L+ RL RGILK + I + + E L P W + DP+ G
Sbjct: 3 LPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSCGL 62
Query: 217 SYYYNESTGKSQWERP-----VETSSRAQTPSHLSLMEDWIEAVDETSGHKYYYNKRTHV 271
YY+N T W P V T S + S+ + E+ +E E S + R+H
Sbjct: 63 PYYWNVDTDLVSWLSPHDPNSVVTKSAKKLRSNNADAEEKLERGHEKSDRNHEKPDRSHE 122
Query: 272 -SQWVHPGSSKPVASEQSDSNASR 294
S H S + + E+SD + R
Sbjct: 123 KSDRSHEKSDR--SHEKSDRDRER 144
Score = 65 (27.9 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 247 LMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGSSKPVASEQSDSNASRN 295
L W + D + G YY+N T + W+ P V ++ + S N
Sbjct: 48 LPPSWYKVFDPSCGLPYYWNVDTDLVSWLSPHDPNSVVTKSAKKLRSNN 96
>UNIPROTKB|G3FP13 [details] [associations]
symbol:PQBP1 "Polyglutamine binding protein 1" species:9823
"Sus scrofa" [GO:0071598 "neuronal ribonucleoprotein granule"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR001202 PROSITE:PS50020
SMART:SM00456 GO:GO:0005634 GO:GO:0005737 SUPFAM:SSF51045
GO:GO:0034063 CTD:10084 GeneTree:ENSGT00390000001905 KO:K12865
OMA:SHEKSDR EMBL:FP565308 EMBL:JF750401 RefSeq:NP_001233597.1
UniGene:Ssc.1853 Ensembl:ENSSSCT00000030898 GeneID:100620849
KEGG:ssc:100620849 Uniprot:G3FP13
Length = 265
Score = 248 (92.4 bits), Expect = 8.3e-30, Sum P(2) = 8.3e-30
Identities = 51/75 (68%), Positives = 58/75 (77%)
Query: 384 SRKRAFSEDDELDPMDPSSYSDAPRGGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPG 441
S+K A +D+ELDPMDPSSYSDAPRG W GL + ADTTA GPLFQQRPYPSPG
Sbjct: 190 SKKAASRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPG 249
Query: 442 AVLRKNAEIASQSKK 456
AVLR NAE AS++K+
Sbjct: 250 AVLRANAE-ASRTKQ 263
Score = 109 (43.4 bits), Expect = 8.3e-30, Sum P(2) = 8.3e-30
Identities = 40/144 (27%), Positives = 61/144 (42%)
Query: 159 LPEYLKQRLRARGILKDTSENGDPPRINNKLESTSAQLDDR--EKLLPGWVEAKDPASGA 216
LP L+ RL RGILK + I + + E L P W + DP+ G
Sbjct: 3 LPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSCGL 62
Query: 217 SYYYNESTGKSQWERP-----VETSSRAQTPSHLSLMEDWIEAVDETSGHKYYYNKRTHV 271
YY+N T W P V T S + S+ + E+ ++ E S + ++R+H
Sbjct: 63 PYYWNVDTDLVSWLSPHDPNSVVTKSAKKLRSNNADAEEKLDRSHEKSERGHEKSERSHE 122
Query: 272 -SQWVHPGSSKPVASEQSDSNASR 294
S+ H S + E+SD + R
Sbjct: 123 KSERGHEKSER--GHEKSDRDRER 144
Score = 65 (27.9 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 247 LMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGSSKPVASEQSDSNASRN 295
L W + D + G YY+N T + W+ P V ++ + S N
Sbjct: 48 LPPSWYKVFDPSCGLPYYWNVDTDLVSWLSPHDPNSVVTKSAKKLRSNN 96
>UNIPROTKB|Q2HJC9 [details] [associations]
symbol:PQBP1 "Polyglutamine-binding protein 1" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0071598
"neuronal ribonucleoprotein granule" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0006351
SUPFAM:SSF51045 GO:GO:0034063 EMBL:BC105573 IPI:IPI00711362
RefSeq:NP_001039854.1 UniGene:Bt.13598 STRING:Q2HJC9 PRIDE:Q2HJC9
Ensembl:ENSBTAT00000024621 GeneID:534894 KEGG:bta:534894 CTD:10084
eggNOG:NOG265480 GeneTree:ENSGT00390000001905 HOGENOM:HOG000231359
HOVERGEN:HBG053064 InParanoid:Q2HJC9 KO:K12865 OMA:SHEKSDR
OrthoDB:EOG4NCMF0 NextBio:20876561 Uniprot:Q2HJC9
Length = 263
Score = 248 (92.4 bits), Expect = 4.5e-29, Sum P(2) = 4.5e-29
Identities = 51/75 (68%), Positives = 58/75 (77%)
Query: 384 SRKRAFSEDDELDPMDPSSYSDAPRGGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPG 441
S+K A +D+ELDPMDPSSYSDAPRG W GL + ADTTA GPLFQQRPYPSPG
Sbjct: 188 SKKAASRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPG 247
Query: 442 AVLRKNAEIASQSKK 456
AVLR NAE AS++K+
Sbjct: 248 AVLRANAE-ASRTKQ 261
Score = 102 (41.0 bits), Expect = 4.5e-29, Sum P(2) = 4.5e-29
Identities = 42/156 (26%), Positives = 61/156 (39%)
Query: 159 LPEYLKQRLRARGILKDTSENGDPPRINNKLESTSAQLDDR--EKLLPGWVEAKDPASGA 216
LP L+ RL RGILK + I + + E L P W + DP+ G
Sbjct: 3 LPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSCGL 62
Query: 217 SYYYNESTGKSQWERPVETSSRAQTPSHLSLMEDWIEAVDETSGHKYYYNKRTHV-SQWV 275
YY+N T W P + +S T S L +A +E + + R H S
Sbjct: 63 PYYWNVDTDLVSWLSPHDPNS-VVTKSAKKLRSSNADA-EEKLDRSHEKSDRGHEKSDRG 120
Query: 276 HPGSSKP-VASEQSDSNASRNTTNGIWDNPSSGLER 310
H S + SE++ + R+ G +D ER
Sbjct: 121 HEKSDRSHEKSERNHEKSDRDRERG-YDKVDRERER 155
>MGI|MGI:1859638 [details] [associations]
symbol:Pqbp1 "polyglutamine binding protein 1" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0034063 "stress granule assembly"
evidence=ISO] [GO:0071598 "neuronal ribonucleoprotein granule"
evidence=IDA] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 MGI:MGI:1859638 GO:GO:0005634
GO:GO:0006355 GO:GO:0006351 SUPFAM:SSF51045 GO:GO:0010494
GO:GO:0034063 GO:GO:0071598 CTD:10084 eggNOG:NOG265480
GeneTree:ENSGT00390000001905 HOGENOM:HOG000231359
HOVERGEN:HBG053064 KO:K12865 OrthoDB:EOG4NCMF0 EMBL:AJ250406
EMBL:AJ296289 EMBL:AK077652 EMBL:BC009657 EMBL:BC051673
IPI:IPI00457950 RefSeq:NP_001239457.1 RefSeq:NP_001239458.1
RefSeq:NP_062351.2 UniGene:Mm.14616 ProteinModelPortal:Q91VJ5
SMR:Q91VJ5 STRING:Q91VJ5 PhosphoSite:Q91VJ5 PRIDE:Q91VJ5
Ensembl:ENSMUST00000033497 Ensembl:ENSMUST00000115654
Ensembl:ENSMUST00000115655 GeneID:54633 KEGG:mmu:54633
InParanoid:Q91VJ5 NextBio:311456 Bgee:Q91VJ5 CleanEx:MM_PQBP1
Genevestigator:Q91VJ5 GermOnline:ENSMUSG00000031157 Uniprot:Q91VJ5
Length = 263
Score = 246 (91.7 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 54/110 (49%), Positives = 71/110 (64%)
Query: 349 KQQQTSNSANAKEDSGKNGPKQSWKPPMGRGNRKDSRKRAFSEDDELDPMDPSSYSDAPR 408
++++ + A+ +E + ++ P + + SRK D+ELDPMDPSSYSDAPR
Sbjct: 158 ERERAFDKADREEGKDRRHHRREELAPYPKNKKATSRK-----DEELDPMDPSSYSDAPR 212
Query: 409 GGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQSKK 456
G W GL + ADTTA GPLFQQRPYPSPGAVLR NAE AS++K+
Sbjct: 213 GTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPGAVLRANAE-ASRTKQ 261
Score = 101 (40.6 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 37/140 (26%), Positives = 57/140 (40%)
Query: 159 LPEYLKQRLRARGILKDTSENGDPPRINNKLESTSAQLDDR--EKLLPGWVEAKDPASGA 216
LP L+ RL RGILK + I + + E L P W + DP+ G
Sbjct: 3 LPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRIEGLPPSWYKVFDPSCGL 62
Query: 217 SYYYNESTGKSQWERPVETSSRAQTPSHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVH 276
YY+N T W P + + T S + + +A D++ + ++ S H
Sbjct: 63 PYYWNVETDLVSWLSPHDPNF-VVTKSAKKVRNNNADAEDKSDRNLEKVDRNHEKSDRSH 121
Query: 277 PGSSKPVAS-EQSDSNASRN 295
KP S E++D N +N
Sbjct: 122 ---EKPDRSHEKADRNHEKN 138
>RGD|1549750 [details] [associations]
symbol:Pqbp1 "polyglutamine binding protein 1" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA;ISO] [GO:0034063 "stress
granule assembly" evidence=IEA] [GO:0071598 "neuronal
ribonucleoprotein granule" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 RGD:1549750
GO:GO:0005634 GO:GO:0006355 GO:GO:0006351 SUPFAM:SSF51045 CTD:10084
eggNOG:NOG265480 HOGENOM:HOG000231359 HOVERGEN:HBG053064 KO:K12865
OrthoDB:EOG4NCMF0 EMBL:BC059163 IPI:IPI00421692
RefSeq:NP_001013979.1 UniGene:Rn.11769 STRING:Q6PCT5 GeneID:302557
KEGG:rno:302557 UCSC:RGD:1549750 InParanoid:Q6PCT5 NextBio:649839
Genevestigator:Q6PCT5 GermOnline:ENSRNOG00000007766 Uniprot:Q6PCT5
Length = 263
Score = 246 (91.7 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
Identities = 54/110 (49%), Positives = 71/110 (64%)
Query: 349 KQQQTSNSANAKEDSGKNGPKQSWKPPMGRGNRKDSRKRAFSEDDELDPMDPSSYSDAPR 408
++++ + A+ ++ + ++ P + + SRK D+ELDPMDPSSYSDAPR
Sbjct: 158 ERERAFDKADREDGKDRRHHRREELAPYPKNKKATSRK-----DEELDPMDPSSYSDAPR 212
Query: 409 GGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQSKK 456
G W GL + ADTTA GPLFQQRPYPSPGAVLR NAE AS+SK+
Sbjct: 213 GTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPGAVLRANAE-ASRSKQ 261
Score = 95 (38.5 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
Identities = 38/144 (26%), Positives = 55/144 (38%)
Query: 159 LPEYLKQRLRARGILKDTSENGDPPRINNKLESTSAQLDDR--EKLLPGWVEAKDPASGA 216
LP L+ RL RGILK + I + + E L P W + DP+ G
Sbjct: 3 LPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRIEGLPPSWYKVFDPSCGL 62
Query: 217 SYYYNESTGKSQWERPVETSSRAQTPSHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVH 276
YY+N T W P + + + S L +A D++ + ++ S H
Sbjct: 63 PYYWNVETDLVSWLSPHDPNF-VVSKSAKKLRNSNADAEDKSERNLEKVDRNHEKSDRSH 121
Query: 277 --PGSSKPVAS---EQSDSNASRN 295
P S A E+SD RN
Sbjct: 122 EKPDRSHEKADRNHEKSDRERERN 145
>UNIPROTKB|O60828 [details] [associations]
symbol:PQBP1 "Polyglutamine-binding protein 1" species:9606
"Homo sapiens" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0071598 "neuronal ribonucleoprotein
granule" evidence=IEA] [GO:0003677 "DNA binding" evidence=TAS]
[GO:0003713 "transcription coactivator activity" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003713 SUPFAM:SSF51045 CTD:10084
eggNOG:NOG265480 HOVERGEN:HBG053064 KO:K12865 OMA:SHEKSDR
OrthoDB:EOG4NCMF0 EMBL:AJ242829 EMBL:AB016533 EMBL:AB041832
EMBL:AB041833 EMBL:AB041834 EMBL:AB041835 EMBL:AB041836
EMBL:AJ973593 EMBL:AJ973594 EMBL:AJ973595 EMBL:AJ973596
EMBL:AJ973597 EMBL:AJ973598 EMBL:AJ973599 EMBL:AJ973600
EMBL:AJ973601 EMBL:AJ973602 EMBL:AJ973603 EMBL:AJ973605
EMBL:AJ973606 EMBL:AJ973607 EMBL:AJ005893 EMBL:BC012358
IPI:IPI00024698 IPI:IPI00030216 IPI:IPI00386483 IPI:IPI00386509
IPI:IPI00607789 IPI:IPI00607805 IPI:IPI00607824 IPI:IPI00644888
IPI:IPI00654565 IPI:IPI00654698 RefSeq:NP_001027553.1
RefSeq:NP_001027554.1 RefSeq:NP_001027555.1 RefSeq:NP_001027556.1
RefSeq:NP_001161461.1 RefSeq:NP_001161462.1 RefSeq:NP_001161464.1
RefSeq:NP_005701.1 RefSeq:NP_652766.1 UniGene:Hs.534384
ProteinModelPortal:O60828 SMR:O60828 IntAct:O60828 MINT:MINT-112545
STRING:O60828 PhosphoSite:O60828 PaxDb:O60828 PRIDE:O60828
DNASU:10084 Ensembl:ENST00000218224 Ensembl:ENST00000247140
Ensembl:ENST00000376548 Ensembl:ENST00000376563
Ensembl:ENST00000376566 Ensembl:ENST00000396763
Ensembl:ENST00000447146 GeneID:10084 KEGG:hsa:10084 UCSC:uc004dle.3
UCSC:uc004dlj.1 UCSC:uc004dlk.3 UCSC:uc004dln.3 UCSC:uc010nij.3
GeneCards:GC0XP048755 HGNC:HGNC:9330 HPA:HPA001880 MIM:300463
MIM:309500 neXtProt:NX_O60828 Orphanet:93946 Orphanet:93947
PharmGKB:PA33693 InParanoid:O60828 PhylomeDB:O60828 ChiTaRS:PQBP1
GenomeRNAi:10084 NextBio:38125 PMAP-CutDB:O60828
ArrayExpress:O60828 Bgee:O60828 Genevestigator:O60828
GermOnline:ENSG00000102103 Uniprot:O60828
Length = 265
Score = 244 (91.0 bits), Expect = 4.3e-28, Sum P(2) = 4.3e-28
Identities = 50/75 (66%), Positives = 57/75 (76%)
Query: 384 SRKRAFSEDDELDPMDPSSYSDAPRGGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPG 441
S+K +D+ELDPMDPSSYSDAPRG W GL + ADTTA GPLFQQRPYPSPG
Sbjct: 190 SKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPG 249
Query: 442 AVLRKNAEIASQSKK 456
AVLR NAE AS++K+
Sbjct: 250 AVLRANAE-ASRTKQ 263
Score = 97 (39.2 bits), Expect = 4.3e-28, Sum P(2) = 4.3e-28
Identities = 40/159 (25%), Positives = 63/159 (39%)
Query: 159 LPEYLKQRLRARGILKDTSENGDPPRINNKLESTSAQLDDR--EKLLPGWVEAKDPASGA 216
LP L+ RL RGILK + I + + E L P W + DP+ G
Sbjct: 3 LPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSCGL 62
Query: 217 SYYYNESTGKSQWERP-----VETSSRAQTPSHLSLMEDWIEAVDETSGHKYYYNKRTHV 271
YY+N T W P V T S + S + E+ ++ + S + + R+H
Sbjct: 63 PYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSH- 121
Query: 272 SQWVHPGSSKPVASEQSDSNASRNTTNGIWDNPSSGLER 310
+ + G K S++ + R+ G +D ER
Sbjct: 122 -EKLDRGHDK---SDRGHDKSDRDRERG-YDKVDRERER 155
>WB|WBGene00020647 [details] [associations]
symbol:pqbp-1.1 species:6239 "Caenorhabditis elegans"
[GO:0019915 "lipid storage" evidence=IMP] [GO:0006641 "triglyceride
metabolic process" evidence=IMP] [GO:0016604 "nuclear body"
evidence=IDA] InterPro:IPR001202 PROSITE:PS50020 SMART:SM00456
GO:GO:0019915 GO:GO:0006641 SUPFAM:SSF51045 GO:GO:0016604
EMBL:FO081576 eggNOG:NOG265480 GeneTree:ENSGT00390000001905
HOGENOM:HOG000231359 KO:K12865 PIR:T28709 RefSeq:NP_499890.2
ProteinModelPortal:O16786 SMR:O16786 STRING:O16786 PaxDb:O16786
EnsemblMetazoa:T21D12.3.1 EnsemblMetazoa:T21D12.3.2 GeneID:176847
KEGG:cel:CELE_T21D12.3 UCSC:T21D12.3.1 CTD:176847 WormBase:T21D12.3
InParanoid:O16786 OMA:EYRLPER NextBio:894270 Uniprot:O16786
Length = 280
Score = 200 (75.5 bits), Expect = 8.4e-21, Sum P(2) = 8.4e-21
Identities = 49/109 (44%), Positives = 62/109 (56%)
Query: 351 QQTSNSANA-KEDSGKNGPKQSWKPPM-GRG-----------NRKDSRKRAFSEDDELDP 397
++TS N K+ G N K+ + PM +G KD KRA + +DP
Sbjct: 164 KKTSRGGNDDKQSRGNNAEKRKRRDPMTSQGPDSDEDELQEMTNKDRLKRAKRKG--IDP 221
Query: 398 MDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRK 446
MDP++Y DAP G W GL+ Q AD TA GPLFQQRPYP+PGA+LRK
Sbjct: 222 MDPAAYGDAPVGKWSDGLRVDQVTGADVTAGGPLFQQRPYPAPGAILRK 270
Score = 91 (37.1 bits), Expect = 8.4e-21, Sum P(2) = 8.4e-21
Identities = 37/153 (24%), Positives = 62/153 (40%)
Query: 159 LPEYLKQRLRARGILKDTSENGDPPRINNKLESTSAQLDDREKLLPG----WVEAKDPAS 214
LP L RL+ RGI+K E N + E ++ PG W +
Sbjct: 3 LPPALLARLQKRGIVKQEEE---VIAENYEKEPEKKSFEENSAGAPGCPNKWNQYHVCLE 59
Query: 215 GASYYYNESTGKSQW-ERPVETSSRAQTPSHLSLMEDWIEAVDETSGHKYYYNKRTHVSQ 273
++ + T + + ER V+ +R + L E+W+E DE Y++NK T
Sbjct: 60 FCYDHWGDGTPEYRLPERYVQNKNRML--AKFPLPENWVEVYDEGLAKYYFWNKTTDEVC 117
Query: 274 WVHPGSSKPVASEQSDSNASRNTTNGIWDNPSS 306
W P + + S+ + A + T D+ +S
Sbjct: 118 WYSPRHPRAIISDPAPRIAREHATVLFGDSHAS 150
>UNIPROTKB|Q5F457 [details] [associations]
symbol:WBP4 "WW domain-binding protein 4" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 GO:GO:0008380 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AJ851443 IPI:IPI00584023
RefSeq:NP_001025995.1 UniGene:Gga.7915 ProteinModelPortal:Q5F457
STRING:Q5F457 GeneID:418829 KEGG:gga:418829 CTD:11193
eggNOG:NOG125287 HOGENOM:HOG000067962 HOVERGEN:HBG053152
InParanoid:Q5F457 KO:K13220 OrthoDB:EOG4R7VBT NextBio:20821967
Uniprot:Q5F457
Length = 398
Score = 184 (69.8 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 52/153 (33%), Positives = 72/153 (47%)
Query: 165 QRLRARGILKDTSENGDPPRINNKLESTSAQLDDREKLLPG-WVEAKDPASGASYYYNES 223
Q + A G K+ E + K + T + K P WV+ P G +YYYN
Sbjct: 100 QSITAEG--KEKKEKKEKKEKKEKKKKTREGTSESPKTEPKEWVQGLSP-EGYTYYYNTK 156
Query: 224 TGKSQWERPVETSSRAQTPSHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHP------ 277
TG+SQWE+P ++T SH + W+E V E GH YYYN +T VS W P
Sbjct: 157 TGESQWEKPKGFQGNSKT-SHTGSV--WVEGVSE-DGHTYYYNTQTGVSTWEKPDGFVSS 212
Query: 278 ---GSSKPVASEQSDSNASRNTTNGIWDNPSSG 307
S + SE++DS AS + + D+ S G
Sbjct: 213 SNDNSQRGKHSEEADSRASESDSEQE-DSESEG 244
>UNIPROTKB|F1NXG2 [details] [associations]
symbol:WBP4 "WW domain-binding protein 4" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IEA] [GO:0070064
"proline-rich region binding" evidence=IEA] InterPro:IPR000690
InterPro:IPR001202 InterPro:IPR003604 InterPro:IPR013085
Pfam:PF00397 Pfam:PF06220 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50171 SMART:SM00451 SMART:SM00456 GO:GO:0005886
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 GO:GO:0005681
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0045292
IPI:IPI00584023 OMA:HEEVDLE GeneTree:ENSGT00390000013956
EMBL:AADN02005497 Ensembl:ENSGALT00000027397 Uniprot:F1NXG2
Length = 398
Score = 181 (68.8 bits), Expect = 5.2e-11, P = 5.2e-11
Identities = 49/144 (34%), Positives = 68/144 (47%)
Query: 174 KDTSENGDPPRINNKLESTSAQLDDREKLLPG-WVEAKDPASGASYYYNESTGKSQWERP 232
K+ E + K + T + K P WV+ P G +YYYN TG+SQWE+P
Sbjct: 107 KEKKEKKEKKEKKEKKKKTREGTSESPKTEPKEWVQGLSP-EGYTYYYNTKTGESQWEKP 165
Query: 233 VETSSRAQTPSHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHP---------GSSKPV 283
++T SH + W+E V E GH YYYN +T VS W P S +
Sbjct: 166 KGFQGNSKT-SHTGAV--WVEGVSE-DGHTYYYNTQTGVSTWEKPDGFVSSSNDNSQRGK 221
Query: 284 ASEQSDSNASRNTTNGIWDNPSSG 307
SE++DS AS + + D+ S G
Sbjct: 222 HSEEADSRASESDSEQE-DSESEG 244
>UNIPROTKB|F1PCW3 [details] [associations]
symbol:WBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 CTD:11193 KO:K13220
OMA:HEEVDLE GeneTree:ENSGT00390000013956 EMBL:AAEX03013176
RefSeq:XP_534136.2 Ensembl:ENSCAFT00000007742 GeneID:476935
KEGG:cfa:476935 Uniprot:F1PCW3
Length = 371
Score = 152 (58.6 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 72/279 (25%), Positives = 120/279 (43%)
Query: 146 LDSESEQKPVTKELPEY----LK---QRLRARGILKDTSENGDPPRINNKLESTSAQLDD 198
LD E++ +KE LK + L+ G+ + SE P + + + TSA
Sbjct: 52 LDKAKEEEKASKEFAAMEAAALKAYQEDLKRLGLESEISEPSISP-VTSTVPPTSASNQP 110
Query: 199 REKLL----PG---WVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTPSHLSLMEDW 251
+EK P WVE + G YYY+ TG SQWERP + + ++ W
Sbjct: 111 KEKKKKKKDPSKGRWVEGIT-SEGYHYYYDLITGASQWERPEGFQGNLKKTAAKTV---W 166
Query: 252 IEAVDETSGHKYYYNKRTHVSQWVHPGSSKPVASEQSDSNASRNTTNGIWDNPSSGLERC 311
+E V E G+ YYYN T S+W P P + + S + + + ++ SS
Sbjct: 167 VEGVSE-DGYTYYYNTETGESRWEKPDDFIPHSGDLLSSKVNEKSVGTLEESKSSDS--- 222
Query: 312 LHCGGWGVGLVQTWGYCNHCTRVLNLPQCQYLLTSLNKQQQ--TSNSANAKED--SGKNG 367
H G + G + T+ P+ ++ S NK+ + T N +E SG N
Sbjct: 223 -HSDSDGEEEAEK-GEASTETQK---PKIKFKEKSKNKETEPETQKEKNVQEQNSSGPNE 277
Query: 368 PK-QSWKPPMGRGNRKDSRKRAFSEDDELDPMDPSSYSD 405
K ++ K G ++ +++ S + E+D PS+ ++
Sbjct: 278 EKSKAHKKSNPYGEWQEIKQQVESHE-EVDLELPSTENE 315
>UNIPROTKB|C9JQA1 [details] [associations]
symbol:PQBP1 "Polyglutamine-binding protein 1" species:9606
"Homo sapiens" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0071598 "neuronal ribonucleoprotein granule"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS50020 SMART:SM00456
GO:GO:0005634 GO:GO:0005737 SUPFAM:SSF51045 GO:GO:0034063
EMBL:AF207550 HOGENOM:HOG000231359 IPI:IPI00644888 HGNC:HGNC:9330
ChiTaRS:PQBP1 ProteinModelPortal:C9JQA1 SMR:C9JQA1 STRING:C9JQA1
PRIDE:C9JQA1 Ensembl:ENST00000443648 ArrayExpress:C9JQA1
Bgee:C9JQA1 Uniprot:C9JQA1
Length = 213
Score = 97 (39.2 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 40/159 (25%), Positives = 63/159 (39%)
Query: 159 LPEYLKQRLRARGILKDTSENGDPPRINNKLESTSAQLDDR--EKLLPGWVEAKDPASGA 216
LP L+ RL RGILK + I + + E L P W + DP+ G
Sbjct: 3 LPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSCGL 62
Query: 217 SYYYNESTGKSQWERP-----VETSSRAQTPSHLSLMEDWIEAVDETSGHKYYYNKRTHV 271
YY+N T W P V T S + S + E+ ++ + S + + R+H
Sbjct: 63 PYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRSH- 121
Query: 272 SQWVHPGSSKPVASEQSDSNASRNTTNGIWDNPSSGLER 310
+ + G K S++ + R+ G +D ER
Sbjct: 122 -EKLDRGHDK---SDRGHDKSDRDRERG-YDKVDRERER 155
Score = 92 (37.4 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 384 SRKRAFSEDDELDPMDPSSYSDAP 407
S+K +D+ELDPMDPSSYSDAP
Sbjct: 190 SKKAVSRKDEELDPMDPSSYSDAP 213
>SGD|S000001495 [details] [associations]
symbol:PRP40 "U1 snRNP protein involved in splicing"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA;IMP] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005685 "U1 snRNP" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
SGD:S000001495 EMBL:BK006944 GO:GO:0003723 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0000398 EMBL:S53418 GO:GO:0071004
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 GO:GO:0005685 KO:K12821 eggNOG:COG5104
GeneTree:ENSGT00530000062987 OrthoDB:EOG41VPBS EMBL:Z28012
PIR:S30014 RefSeq:NP_012913.3 RefSeq:NP_012915.3 PDB:1O6W PDB:2B7E
PDB:2KFD PDBsum:1O6W PDBsum:2B7E PDBsum:2KFD
ProteinModelPortal:P33203 SMR:P33203 DIP:DIP-1620N IntAct:P33203
MINT:MINT-386201 STRING:P33203 PaxDb:P33203 EnsemblFungi:YKL012W
GeneID:853857 GeneID:853859 KEGG:sce:YKL010C KEGG:sce:YKL012W
CYGD:YKL012w HOGENOM:HOG000001088 KO:K10590 OMA:DDDPLWK
EvolutionaryTrace:P33203 NextBio:975100 Genevestigator:P33203
GermOnline:YKL012W Uniprot:P33203
Length = 583
Score = 155 (59.6 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 39/96 (40%), Positives = 46/96 (47%)
Query: 206 WVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTPSHLSLMEDWIEAVDETSGHKYYY 265
W EAKD ASG YYYN T KS WE+P E S+ + L L E+ +A G YYY
Sbjct: 4 WKEAKD-ASGRIYYYNTLTKKSTWEKPKELISQEE----LLLRENGWKAAKTADGKVYYY 58
Query: 266 NKRTHVSQWVHPGSSKPVA--SEQSDSNASRNTTNG 299
N T + W P K V +EQ S NG
Sbjct: 59 NPTTRETSWTIPAFEKKVEPIAEQKHDTVSHAQVNG 94
>RGD|620033 [details] [associations]
symbol:Wbp4 "WW domain binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA;ISO] [GO:0005886 "plasma membrane"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISO;ISS] [GO:0070064
"proline-rich region binding" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 RGD:620033 GO:GO:0005886 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0005681 GO:GO:0003676 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0045292 CTD:11193 eggNOG:NOG125287
HOGENOM:HOG000067962 HOVERGEN:HBG053152 KO:K13220 OrthoDB:EOG4R7VBT
OMA:HEEVDLE GeneTree:ENSGT00390000013956 EMBL:BC089052
IPI:IPI00554046 RefSeq:NP_446218.1 UniGene:Rn.144631
ProteinModelPortal:Q5HZF2 SMR:Q5HZF2 STRING:Q5HZF2
Ensembl:ENSRNOT00000015605 GeneID:114765 KEGG:rno:114765
UCSC:RGD:620033 InParanoid:Q5HZF2 NextBio:618853
Genevestigator:Q5HZF2 GermOnline:ENSRNOG00000011678 Uniprot:Q5HZF2
Length = 374
Score = 147 (56.8 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 51/177 (28%), Positives = 75/177 (42%)
Query: 146 LDSESEQKPVTKELPEY----LK---QRLRARGILKDTSENGDPPRINNKLESTSAQLDD 198
LD E++ +KE LK + L+ G+ D SE P + N ++ T
Sbjct: 52 LDKAKEEEKASKEFAAMEAAALKAYQEDLKRLGLQSDISEPTISP-VTNTVQPTPTANQQ 110
Query: 199 REK--------LLPG-WVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTPSHLSLME 249
+EK G WVE A G YYY+ TG SQWE+P + + ++
Sbjct: 111 KEKKKKKKKKEASKGRWVEGVT-ADGHCYYYDLVTGASQWEKPEGFQGNLKKTAAKAI-- 167
Query: 250 DWIEAVDETSGHKYYYNKRTHVSQWVHPGSSKPVASEQSDSNASRNTTNGIWDNPSS 306
W+E + E G+ YYYN T S+W P P + S S + + D+ SS
Sbjct: 168 -WVEGLSE-DGYTYYYNTETGESKWEKPDDFIPHGGDVLSSKDSEKLPDTLEDSKSS 222
>TAIR|locus:2091171 [details] [associations]
symbol:PRP40B "pre-mRNA-processing protein 40B"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008380 "RNA splicing" evidence=IPI]
[GO:0070063 "RNA polymerase binding" evidence=IPI]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0006355 GO:GO:0008380 GO:GO:0006351 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AP000417 Gene3D:1.10.10.440 InterPro:IPR002713
Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698 IPI:IPI00525827
IPI:IPI01020219 PIR:T52396 RefSeq:NP_188601.4 UniGene:At.27544
HSSP:O75400 ProteinModelPortal:F4JCC1 SMR:F4JCC1 PRIDE:F4JCC1
EnsemblPlants:AT3G19670.1 GeneID:821504 KEGG:ath:AT3G19670
TAIR:At3g19670 KO:K12821 OMA:SHERPSQ InterPro:IPR027237
PANTHER:PTHR11864:SF0 Uniprot:F4JCC1
Length = 992
Score = 146 (56.5 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 36/103 (34%), Positives = 46/103 (44%)
Query: 200 EKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTPSHLSLMEDWIEAVDETS 259
+K L WVE A G Y++N+ T KS WE+PVE + + DW E
Sbjct: 203 QKALTDWVEHTS-ADGRKYFFNKRTKKSTWEKPVELMTLFE---RADARTDWKEH-SSPD 257
Query: 260 GHKYYYNKRTHVSQWVHPGSSKPVASEQSDSNASRNTTNGIWD 302
G KYYYNK T S W P K V + ++ GI D
Sbjct: 258 GRKYYYNKITKQSTWTMPEEMKIVREQAEIASVQGPHAEGIID 300
Score = 54 (24.1 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 355 NSANAKEDSGKNGPKQSWKPPM------GRGNRKDSRKRAFSEDDELDPMD 399
++ NA + SG +GPK+S KP + + K + +FS +++L+ +D
Sbjct: 406 STKNANQGSG-SGPKESQKPMVESEKVESQTEEKQIHQESFSFNNKLEAVD 455
>MGI|MGI:109568 [details] [associations]
symbol:Wbp4 "WW domain binding protein 4" species:10090 "Mus
musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0070064 "proline-rich region binding"
evidence=ISO] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 EMBL:AF071184 MGI:MGI:109568 GO:GO:0005886
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 GO:GO:0005681
GO:GO:0003676 EMBL:CH466535 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0045292 CTD:11193 eggNOG:NOG125287 HOGENOM:HOG000067962
HOVERGEN:HBG053152 KO:K13220 OrthoDB:EOG4R7VBT OMA:HEEVDLE
EMBL:AK019160 EMBL:AK135215 EMBL:AK160559 EMBL:AK162009
EMBL:BC034851 IPI:IPI00117019 PIR:S64714 RefSeq:NP_061235.2
UniGene:Mm.476813 ProteinModelPortal:Q61048 SMR:Q61048
STRING:Q61048 PhosphoSite:Q61048 PaxDb:Q61048 PRIDE:Q61048
Ensembl:ENSMUST00000022601 GeneID:22380 KEGG:mmu:22380
GeneTree:ENSGT00390000013956 InParanoid:Q3TUU8 ChiTaRS:WBP4
NextBio:302741 Bgee:Q61048 CleanEx:MM_WBP4 Genevestigator:Q61048
GermOnline:ENSMUSG00000022023 Uniprot:Q61048
Length = 376
Score = 141 (54.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 37/125 (29%), Positives = 55/125 (44%)
Query: 182 PPRINNKLESTSAQLDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQT 241
P +N+ + + +E GWVE A G YYY+ TG SQWE+P +
Sbjct: 105 PTPTSNQQKEKKKKKKKKEASKGGWVEGVT-ADGHCYYYDLITGASQWEKPEGFQGNLKK 163
Query: 242 PSHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGSSKPVASEQSDSNASRNTTNGIW 301
+ ++ W+E + E G+ YYYN T S+W P P + S S + +
Sbjct: 164 TAAKAV---WVEGLSE-DGYTYYYNTETGESKWEKPEDFIPHGGDVLSSKDSGKLPDTLE 219
Query: 302 DNPSS 306
D SS
Sbjct: 220 DAKSS 224
>UNIPROTKB|Q17QQ6 [details] [associations]
symbol:WBP4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070064 "proline-rich region binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000690
InterPro:IPR001202 InterPro:IPR003604 InterPro:IPR013085
Pfam:PF00397 Pfam:PF06220 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50171 SMART:SM00451 SMART:SM00456 GO:GO:0005886
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 GO:GO:0005681
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0045292
CTD:11193 eggNOG:NOG125287 HOGENOM:HOG000067962 HOVERGEN:HBG053152
KO:K13220 OrthoDB:EOG4R7VBT OMA:HEEVDLE
GeneTree:ENSGT00390000013956 EMBL:DAAA02032752 EMBL:DAAA02032753
EMBL:BC118233 IPI:IPI00700299 RefSeq:NP_001068719.1
UniGene:Bt.21949 SMR:Q17QQ6 STRING:Q17QQ6
Ensembl:ENSBTAT00000022129 GeneID:506275 KEGG:bta:506275
InParanoid:Q17QQ6 NextBio:20867534 Uniprot:Q17QQ6
Length = 395
Score = 141 (54.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 42/150 (28%), Positives = 68/150 (45%)
Query: 164 KQRLRARGILKDTSENGDPPRINNKLESTSAQLDDREKLL----PG---WVEAKDPASGA 216
++ L+ G+ + SE P + + + TSA +EK P WVE + G
Sbjct: 77 QEDLKRLGLESEISEPSVSP-VTSTVPPTSASNQQKEKKKKKKDPSKGRWVEGIT-SEGH 134
Query: 217 SYYYNESTGKSQWERPVETSSRAQTPSHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVH 276
YYY+ TG SQWE+P + + ++ WIE + E G+ YYYN T S+W
Sbjct: 135 HYYYDLITGASQWEKPEGFQGNLKKATGKTV---WIEGLSE-DGYTYYYNTETGESRWEK 190
Query: 277 PGSSKPVASEQSDSNASRNTTNGIWDNPSS 306
P P + + S + + + ++ SS
Sbjct: 191 PDDFIPHSGDLPSSKVNEKSLGTLEESKSS 220
>UNIPROTKB|G3MZC7 [details] [associations]
symbol:PRPF40A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070064 "proline-rich region binding" evidence=IEA]
[GO:0032465 "regulation of cytokinesis" evidence=IEA] [GO:0016477
"cell migration" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0008360 "regulation of cell shape" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 GO:GO:0007010 GO:GO:0016477 GO:GO:0008360
GO:GO:0016363 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0032465
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 GeneTree:ENSGT00530000062987 OMA:QETVADF
EMBL:DAAA02004583 Ensembl:ENSBTAT00000063676 Uniprot:G3MZC7
Length = 958
Score = 137 (53.3 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 35/97 (36%), Positives = 48/97 (49%)
Query: 182 PPRINNKLESTSAQLDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQT 241
PP +NN +A K + W E K P G +YYYN T +S WE+P + +T
Sbjct: 126 PPGVNNM--DVAAGTTSGAKSM--WTEHKSP-DGRTYYYNTETKQSTWEKPDDL----KT 176
Query: 242 PSHLSLME-DWIEAVDETSGHKYYYNKRTHVSQWVHP 277
P+ L + W E + SG YYYN +T S+W P
Sbjct: 177 PAEQLLSKCPWKEYKSD-SGKPYYYNSQTKESRWAKP 212
Score = 55 (24.4 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 349 KQQQTSNSANAKEDSGKNGPKQSWKPPMGRGNRKDSRKRAFSEDD-ELDPMDPSSYSDAP 407
K++Q S S +A E S ++S+K + ++K S+KR D E D +
Sbjct: 844 KKRQRSESRSASEHSSSAESERSYKK--SKKHKKKSKKRRHKSDSPESDAEREKDKKEKD 901
Query: 408 RGG 410
R G
Sbjct: 902 REG 904
Score = 40 (19.1 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 11/53 (20%), Positives = 21/53 (39%)
Query: 339 QCQYLLTSLNKQQQTSNSANAKEDSGKNGPKQSWKPPMGRGNRKDSRKRAFSE 391
+CQ+ + K + S + K ++G + R+ S R+ SE
Sbjct: 804 ECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASE 856
Score = 38 (18.4 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 389 FSEDDELDPMD 399
F+ED+EL MD
Sbjct: 564 FAEDEELQNMD 574
Score = 38 (18.4 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 454 SKKSSPHFTAISKRGDGSD 472
SKKS H S+ GSD
Sbjct: 816 SKKSKKHHRKRSRSRSGSD 834
Score = 37 (18.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 380 NRKDSRKRAFSEDDELD 396
+RK SR R+ S+ D+ D
Sbjct: 823 HRKRSRSRSGSDSDDDD 839
>UNIPROTKB|F1RQH2 [details] [associations]
symbol:PRPF40A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070064 "proline-rich region binding" evidence=IEA]
[GO:0032465 "regulation of cytokinesis" evidence=IEA] [GO:0016477
"cell migration" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0008360 "regulation of cell shape" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 GO:GO:0007010 GO:GO:0016477 GO:GO:0008360
GO:GO:0016363 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0032465
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 KO:K12821 CTD:55660 GeneTree:ENSGT00530000062987
OMA:QETVADF EMBL:CU571020 EMBL:CU915608 RefSeq:NP_001231502.1
UniGene:Ssc.6297 Ensembl:ENSSSCT00000017278 GeneID:100157937
KEGG:ssc:100157937 Uniprot:F1RQH2
Length = 957
Score = 137 (53.3 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 35/97 (36%), Positives = 48/97 (49%)
Query: 182 PPRINNKLESTSAQLDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQT 241
PP +NN +A K + W E K P G +YYYN T +S WE+P + +T
Sbjct: 126 PPGVNNM--DVAAGATSGAKSM--WTEHKSP-DGRTYYYNTETKQSTWEKPDDL----KT 176
Query: 242 PSHLSLME-DWIEAVDETSGHKYYYNKRTHVSQWVHP 277
P+ L + W E + SG YYYN +T S+W P
Sbjct: 177 PAEQLLSKCPWKEYKSD-SGKPYYYNSQTKESRWAKP 212
Score = 54 (24.1 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 349 KQQQTSNSANAKEDSGKNGPKQSWKPPMGRGNRKDSRKRAFSED 392
K++Q S S +A E S ++S+K + ++K S+KR D
Sbjct: 843 KKRQRSESRSASEHSSSAESERSYKK--SKKHKKKSKKRRHKSD 884
Score = 40 (19.1 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 11/53 (20%), Positives = 21/53 (39%)
Query: 339 QCQYLLTSLNKQQQTSNSANAKEDSGKNGPKQSWKPPMGRGNRKDSRKRAFSE 391
+CQ+ + K + S + K ++G + R+ S R+ SE
Sbjct: 803 ECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASE 855
Score = 38 (18.4 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 389 FSEDDELDPMD 399
F+ED+EL MD
Sbjct: 563 FAEDEELQNMD 573
Score = 38 (18.4 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 454 SKKSSPHFTAISKRGDGSD 472
SKKS H S+ GSD
Sbjct: 815 SKKSKKHHRKRSRSRSGSD 833
Score = 37 (18.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 380 NRKDSRKRAFSEDDELD 396
+RK SR R+ S+ D+ D
Sbjct: 822 HRKRSRSRSGSDSDDDD 838
>UNIPROTKB|H0YG38 [details] [associations]
symbol:PRPF40A "Pre-mRNA-processing factor 40 homolog A"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0005634 Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AC079344
EMBL:AC012443 HGNC:HGNC:16463 ChiTaRS:PRPF40A
Ensembl:ENST00000493468 Bgee:H0YG38 Uniprot:H0YG38
Length = 346
Score = 134 (52.2 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 36/122 (29%), Positives = 58/122 (47%)
Query: 182 PPRINNKLESTSAQLDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQT 241
PP +N+ ++ + + + W E K P G +YYYN T +S WE+P + +T
Sbjct: 119 PPGVNS-MDVAAGTASGAKSM---WTEHKSP-DGRTYYYNTETKQSTWEKPDDL----KT 169
Query: 242 PSHLSLME-DWIEAVDETSGHKYYYNKRTHVSQWVHPGSSKP----VASEQSDSNASRNT 296
P+ L + W E + SG YYYN +T S+W P + + +E+S T
Sbjct: 170 PAEQLLSKCPWKEYKSD-SGKPYYYNSQTKESRWAKPKELEDLEAMIKAEESSKQEECTT 228
Query: 297 TN 298
T+
Sbjct: 229 TS 230
>UNIPROTKB|F1NQH4 [details] [associations]
symbol:PRPF40A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0007010 "cytoskeleton organization"
evidence=IEA] [GO:0008360 "regulation of cell shape" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0016477 "cell
migration" evidence=IEA] [GO:0032465 "regulation of cytokinesis"
evidence=IEA] [GO:0070064 "proline-rich region binding"
evidence=IEA] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 GO:GO:0007010 GO:GO:0016477
GO:GO:0008360 GO:GO:0016363 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0032465 Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846
SMART:SM00441 SUPFAM:SSF81698 OMA:SHERPSQ
GeneTree:ENSGT00530000062987 EMBL:AADN02017035 EMBL:AADN02017036
IPI:IPI00822687 Ensembl:ENSGALT00000037747 ArrayExpress:F1NQH4
Uniprot:F1NQH4
Length = 1076
Score = 135 (52.6 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 33/106 (31%), Positives = 55/106 (51%)
Query: 191 STSAQLDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTPSHLSLME- 249
+ S+ ++ K W E K P G +YYYN T +S WE+P + +TP+ L +
Sbjct: 293 TNSSGSEEHSKQKSTWTEHKSP-DGRTYYYNTETKQSTWEKPDDL----KTPAEQLLSKC 347
Query: 250 DWIEAVDETSGHKYYYNKRTHVSQWVHPGSSKPV-ASEQSDSNASR 294
W E + SG YYYN +T S+W P + + A +++ N+++
Sbjct: 348 PWKEYKSD-SGKPYYYNSQTKESRWAKPKELEDLEALIKAEENSTK 392
Score = 53 (23.7 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 349 KQQQTSNSANAKEDSGKNGPKQSWKPPMGRGNRKDSRKRAFSED 392
K++Q S S +A E S ++S+K + ++K S+KR D
Sbjct: 961 KKRQRSESRSASERSSSAESERSYKK--SKKHKKKSKKRRHKSD 1002
Score = 47 (21.6 bits), Expect = 8.0e-05, Sum P(3) = 8.0e-05
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 349 KQQQTSNSANAKEDSGKNGPKQSWKP------PMGRG---NRKDSRKRAFSE 391
++Q ++ANA +DS ++G + K P+ + N K+ K+AF E
Sbjct: 466 QEQSAESAANAADDSKQDGSADASKKEGDDAQPVKKTYTWNTKEEAKQAFKE 517
Score = 42 (19.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 339 QCQYLLTSLNKQQQTSNSANAKEDSGKNGPKQSWKPPMGRGNRKDSRKRAFSE 391
+CQ+ + K + S + K ++G + + R+ S R+ SE
Sbjct: 921 ECQHHHSKNKKHSKKSKKHHRKRSRSRSGSESEDDDSHSKKKRQRSESRSASE 973
Score = 38 (18.4 bits), Expect = 8.0e-05, Sum P(3) = 8.0e-05
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 389 FSEDDELDPMD 399
F+ED+EL MD
Sbjct: 681 FAEDEELQNMD 691
>UNIPROTKB|B7Z6T0 [details] [associations]
symbol:ARHGAP27 "Rho GTPase-activating protein 27"
species:9606 "Homo sapiens" [GO:0005543 "phospholipid binding"
evidence=IEA] Pfam:PF00169 InterPro:IPR001202 InterPro:IPR001849
Pfam:PF00397 PROSITE:PS50003 PROSITE:PS50020 SMART:SM00233
SMART:SM00456 GO:GO:0005543 Gene3D:2.30.29.30 InterPro:IPR011993
Gene3D:2.20.70.10 SUPFAM:SSF51045 eggNOG:NOG279563
InterPro:IPR015767 PANTHER:PTHR23181 EMBL:AC217778 EMBL:AC003070
UniGene:Hs.205326 OrthoDB:EOG4X3H0P EMBL:AK300880 IPI:IPI01011796
SMR:B7Z6T0 STRING:B7Z6T0 Ensembl:ENST00000547264 UCSC:uc010wjl.1
HOVERGEN:HBG106190 Uniprot:B7Z6T0
Length = 399
Score = 134 (52.2 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 29/87 (33%), Positives = 41/87 (47%)
Query: 204 PGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTP--------SHLSLMEDWIEAV 255
P W D +G YYYN TG + WE P E + A +P SH+SL +W +
Sbjct: 50 PVWETHTDAGTGRPYYYNPDTGVTTWESPFEAAEGAASPATSPASVDSHVSLETEWGQYW 109
Query: 256 DETSGHKYYYNKRTHVSQWVHPGSSKP 282
DE S ++YN T + W ++P
Sbjct: 110 DEESRRVFFYNPLTGETAWEDEAENEP 136
>UNIPROTKB|O75400 [details] [associations]
symbol:PRPF40A "Pre-mRNA-processing factor 40 homolog A"
species:9606 "Homo sapiens" [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0070064 "proline-rich region binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IDA] [GO:0007010 "cytoskeleton
organization" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0008360 "regulation of cell shape" evidence=IMP]
[GO:0032465 "regulation of cytokinesis" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0007010 GO:GO:0051301 GO:GO:0016477 GO:GO:0008380
GO:GO:0008360 GO:GO:0016607 GO:GO:0006397 GO:GO:0007049
GO:GO:0016363 Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AC079344
UniGene:Hs.643580 PDB:2DYF PDBsum:2DYF GO:GO:0032465
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 EMBL:AC012443 KO:K12821 eggNOG:COG5104
EMBL:AK000592 EMBL:AK024810 EMBL:AF049523 EMBL:AF049524
EMBL:AF049528 EMBL:BC011788 EMBL:BC027178 EMBL:U70667 EMBL:AF155096
EMBL:AF151059 IPI:IPI00337385 IPI:IPI00337386 IPI:IPI00337387
IPI:IPI00915929 RefSeq:NP_060362.3 PDB:1UZC PDB:1YWI PDB:1YWJ
PDB:1ZR7 PDB:2CQN PDB:2KZG PDB:2L5F PDB:2L9V PDB:2LKS PDBsum:1UZC
PDBsum:1YWI PDBsum:1YWJ PDBsum:1ZR7 PDBsum:2CQN PDBsum:2KZG
PDBsum:2L5F PDBsum:2L9V PDBsum:2LKS ProteinModelPortal:O75400
SMR:O75400 IntAct:O75400 MINT:MINT-1180299 STRING:O75400
PhosphoSite:O75400 PaxDb:O75400 PRIDE:O75400 DNASU:55660
Ensembl:ENST00000410080 GeneID:55660 KEGG:hsa:55660 UCSC:uc002tyi.2
CTD:55660 GeneCards:GC02M153508 HGNC:HGNC:16463 HPA:HPA038273
MIM:612941 neXtProt:NX_O75400 PharmGKB:PA28195 HOVERGEN:HBG059634
ChiTaRS:PRPF40A EvolutionaryTrace:O75400 GenomeRNAi:55660
NextBio:60391 PMAP-CutDB:O75400 ArrayExpress:O75400 Bgee:O75400
CleanEx:HS_PRPF40A Genevestigator:O75400 GermOnline:ENSG00000196504
Uniprot:O75400
Length = 957
Score = 132 (51.5 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 32/97 (32%), Positives = 49/97 (50%)
Query: 182 PPRINNKLESTSAQLDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQT 241
PP +N+ ++ + + + W E K P G +YYYN T +S WE+P + +T
Sbjct: 126 PPGVNS-MDVAAGTASGAKSM---WTEHKSP-DGRTYYYNTETKQSTWEKPDDL----KT 176
Query: 242 PSHLSLME-DWIEAVDETSGHKYYYNKRTHVSQWVHP 277
P+ L + W E + SG YYYN +T S+W P
Sbjct: 177 PAEQLLSKCPWKEYKSD-SGKPYYYNSQTKESRWAKP 212
Score = 54 (24.1 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 349 KQQQTSNSANAKEDSGKNGPKQSWKPPMGRGNRKDSRKRAFSED 392
K++Q S S +A E S ++S+K + ++K S+KR D
Sbjct: 843 KKRQRSESRSASEHSSSAESERSYKK--SKKHKKKSKKRRHKSD 884
Score = 40 (19.1 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 11/53 (20%), Positives = 21/53 (39%)
Query: 339 QCQYLLTSLNKQQQTSNSANAKEDSGKNGPKQSWKPPMGRGNRKDSRKRAFSE 391
+CQ+ + K + S + K ++G + R+ S R+ SE
Sbjct: 803 ECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASE 855
Score = 38 (18.4 bits), Expect = 0.00086, Sum P(3) = 0.00086
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 389 FSEDDELDPMD 399
F+ED+EL MD
Sbjct: 563 FAEDEELQNMD 573
Score = 38 (18.4 bits), Expect = 0.00086, Sum P(3) = 0.00086
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 454 SKKSSPHFTAISKRGDGSD 472
SKKS H S+ GSD
Sbjct: 815 SKKSKKHHRKRSRSRSGSD 833
Score = 37 (18.1 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 380 NRKDSRKRAFSEDDELD 396
+RK SR R+ S+ D+ D
Sbjct: 822 HRKRSRSRSGSDSDDDD 838
>RGD|1311401 [details] [associations]
symbol:Prpf40a "PRP40 pre-mRNA processing factor 40 homolog A
(S. cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0007010 "cytoskeleton organization"
evidence=IEA;ISO] [GO:0008360 "regulation of cell shape"
evidence=IEA;ISO] [GO:0016363 "nuclear matrix" evidence=IEA;ISO]
[GO:0016477 "cell migration" evidence=IEA;ISO] [GO:0032465
"regulation of cytokinesis" evidence=IEA;ISO] [GO:0070064
"proline-rich region binding" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 RGD:1311401
GO:GO:0007010 GO:GO:0016477 GO:GO:0008360 GO:GO:0016363
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0032465 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
KO:K12821 CTD:55660 GeneTree:ENSGT00530000062987 OrthoDB:EOG418BN6
EMBL:CH473983 IPI:IPI00372759 RefSeq:NP_001099950.1
UniGene:Rn.95204 Ensembl:ENSRNOT00000006549 GeneID:295607
KEGG:rno:295607 UCSC:RGD:1311401 NextBio:639767 Uniprot:D3ZJ92
Length = 953
Score = 132 (51.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 32/97 (32%), Positives = 49/97 (50%)
Query: 182 PPRINNKLESTSAQLDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQT 241
PP +N+ ++ + + + W E K P G +YYYN T +S WE+P + +T
Sbjct: 126 PPGVNS-MDVAAGAASGAKSM---WTEHKSP-DGRTYYYNTETKQSTWEKPDDL----KT 176
Query: 242 PSHLSLME-DWIEAVDETSGHKYYYNKRTHVSQWVHP 277
P+ L + W E + SG YYYN +T S+W P
Sbjct: 177 PAEQLLSKCPWKEYKSD-SGKPYYYNSQTKESRWAKP 212
Score = 53 (23.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 349 KQQQTSNSANAKEDSGKNGPKQSWKPPMGRGNRKDSRKRAFSED 392
K++Q S S +A E S ++S+K + ++K S+KR D
Sbjct: 839 KKRQRSESHSASEHSSSAESERSYKK--SKKHKKKSKKRRHKSD 880
Score = 38 (18.4 bits), Expect = 0.00084, Sum P(3) = 0.00084
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 389 FSEDDELDPMD 399
F+ED+EL MD
Sbjct: 559 FAEDEELQNMD 569
Score = 38 (18.4 bits), Expect = 0.00084, Sum P(3) = 0.00084
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 454 SKKSSPHFTAISKRGDGSD 472
SKKS H S+ GSD
Sbjct: 811 SKKSKKHHRKRSRSRSGSD 829
Score = 37 (18.1 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 380 NRKDSRKRAFSEDDELD 396
+RK SR R+ S+ D+ D
Sbjct: 818 HRKRSRSRSGSDSDDDD 834
>MGI|MGI:1860512 [details] [associations]
symbol:Prpf40a "PRP40 pre-mRNA processing factor 40 homolog
A (yeast)" species:10090 "Mus musculus" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=ISO] [GO:0008360 "regulation
of cell shape" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016363 "nuclear matrix" evidence=ISO;IDA]
[GO:0016477 "cell migration" evidence=ISO] [GO:0032465 "regulation
of cytokinesis" evidence=ISO] [GO:0070064 "proline-rich region
binding" evidence=IDA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 MGI:MGI:1860512
GO:GO:0007010 GO:GO:0016477 GO:GO:0008380 GO:GO:0008360
GO:GO:0016607 GO:GO:0006397 GO:GO:0070064 GO:GO:0016363
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0032465 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
KO:K12821 eggNOG:COG5104 CTD:55660 HOVERGEN:HBG059634 EMBL:AF135439
EMBL:AK041205 EMBL:AK051375 EMBL:AK087963 EMBL:U40747
IPI:IPI00284213 IPI:IPI00338887 PIR:S64713 RefSeq:NP_061255.1
UniGene:Mm.257474 UniGene:Mm.392945 UniGene:Mm.393219
ProteinModelPortal:Q9R1C7 SMR:Q9R1C7 IntAct:Q9R1C7 STRING:Q9R1C7
PhosphoSite:Q9R1C7 PaxDb:Q9R1C7 PRIDE:Q9R1C7 DNASU:56194
Ensembl:ENSMUST00000076313 GeneID:56194 KEGG:mmu:56194
GeneTree:ENSGT00530000062987 HOGENOM:HOG000231802 InParanoid:Q9R1C7
OMA:QETVADF OrthoDB:EOG418BN6 NextBio:312006 Bgee:Q9R1C7
Genevestigator:Q9R1C7 GermOnline:ENSMUSG00000061136 Uniprot:Q9R1C7
Length = 953
Score = 132 (51.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 32/97 (32%), Positives = 49/97 (50%)
Query: 182 PPRINNKLESTSAQLDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQT 241
PP +N+ ++ + + + W E K P G +YYYN T +S WE+P + +T
Sbjct: 126 PPGVNS-MDVAAGAASGAKSM---WTEHKSP-DGRTYYYNTETKQSTWEKPDDL----KT 176
Query: 242 PSHLSLME-DWIEAVDETSGHKYYYNKRTHVSQWVHP 277
P+ L + W E + SG YYYN +T S+W P
Sbjct: 177 PAEQLLSKCPWKEYKSD-SGKPYYYNSQTKESRWAKP 212
Score = 52 (23.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 349 KQQQTSNSANAKEDSGKNGPKQSWKPPMGRGNRKDSRKRAFSED 392
K++Q S S +A E S ++S+K + ++K S+KR D
Sbjct: 839 KKRQRSESHSASERSSSAESERSYKK--SKKHKKKSKKRRHKSD 880
Score = 40 (19.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 380 NRKDSRKRAFSEDDELD 396
+RK SR R+ SE D+ D
Sbjct: 818 HRKRSRSRSGSESDDDD 834
Score = 38 (18.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 389 FSEDDELDPMD 399
F+ED+EL MD
Sbjct: 559 FAEDEELQNMD 569
Score = 37 (18.1 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 10/53 (18%), Positives = 21/53 (39%)
Query: 339 QCQYLLTSLNKQQQTSNSANAKEDSGKNGPKQSWKPPMGRGNRKDSRKRAFSE 391
+CQ+ + K + S + K ++G + + R+ S + SE
Sbjct: 799 ECQHHHSKNKKHSKKSKKHHRKRSRSRSGSESDDDDSHSKKKRQRSESHSASE 851
>UNIPROTKB|K7EMU7 [details] [associations]
symbol:PIN1 "Peptidyl-prolyl cis-trans isomerase
NIMA-interacting 1" species:9606 "Homo sapiens" [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] InterPro:IPR000297
InterPro:IPR001202 Pfam:PF00397 Pfam:PF00639 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50198 SMART:SM00456 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR023058 PROSITE:PS01096 HGNC:HGNC:8988
EMBL:AC008752 Ensembl:ENST00000587625 Uniprot:K7EMU7
Length = 145
Score = 110 (43.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 198 DREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
D EKL PGW + +SG YY+N T SQWERP SS
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSS 42
>UNIPROTKB|O15428 [details] [associations]
symbol:PIN1P1 "Putative PIN1-like protein" species:9606
"Homo sapiens" [GO:0008150 "biological_process" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL391728 EMBL:U82382 EMBL:AK314840
IPI:IPI00006667 UniGene:Hs.654711 ProteinModelPortal:O15428
SMR:O15428 MINT:MINT-1668373 STRING:O15428 PRIDE:O15428
GeneCards:GC01P070386 HGNC:HGNC:8989 MIM:602051 neXtProt:NX_O15428
Genevestigator:O15428 GermOnline:ENSG00000203959 Uniprot:O15428
Length = 100
Score = 110 (43.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 21/40 (52%), Positives = 23/40 (57%)
Query: 198 DREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
D EKL PGW + SG YY+N T SQWERP SS
Sbjct: 3 DEEKLPPGWEKRMSRPSGRGYYFNHITNPSQWERPSGNSS 42
>RGD|735202 [details] [associations]
symbol:Arhgap27 "Rho GTPase activating protein 27" species:10116
"Rattus norvegicus" [GO:0005096 "GTPase activator activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005543 "phospholipid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA;IMP] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0017124 "SH3 domain
binding" evidence=IDA] [GO:0030675 "Rac GTPase activator activity"
evidence=IDA] [GO:0032855 "positive regulation of Rac GTPase
activity" evidence=IDA] [GO:0043089 "positive regulation of Cdc42
GTPase activity" evidence=IDA] Pfam:PF00169 InterPro:IPR000198
InterPro:IPR001202 InterPro:IPR001452 InterPro:IPR001849
InterPro:IPR008936 Pfam:PF00397 Pfam:PF00620 PROSITE:PS01159
PROSITE:PS50002 PROSITE:PS50003 PROSITE:PS50020 PROSITE:PS50238
SMART:SM00233 SMART:SM00324 SMART:SM00326 SMART:SM00456
EMBL:AY394725 RGD:735202 GO:GO:0006898 GO:GO:0005737 GO:GO:0007165
GO:GO:0016020 Gene3D:1.10.555.10 SUPFAM:SSF48350 GO:GO:0005543
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0017124 GO:GO:0005622
SUPFAM:SSF50044 GO:GO:0030675 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0043089 eggNOG:NOG279563 InterPro:IPR015767 PANTHER:PTHR23181
HOGENOM:HOG000294167 HOVERGEN:HBG005328 CTD:201176
OrthoDB:EOG4X3H0P IPI:IPI00400617 RefSeq:NP_942054.1
UniGene:Rn.17895 HSSP:Q8C863 ProteinModelPortal:Q6TLK4
STRING:Q6TLK4 PhosphoSite:Q6TLK4 PRIDE:Q6TLK4 GeneID:303583
KEGG:rno:303583 InParanoid:Q6TLK4 NextBio:651663
ArrayExpress:Q6TLK4 Genevestigator:Q6TLK4 Uniprot:Q6TLK4
Length = 869
Score = 136 (52.9 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 42/138 (30%), Positives = 64/138 (46%)
Query: 148 SESEQKPVTKELPEYLKQRLRARGILKDTSENGDP--PRINNKLESTSAQLDDRE-KLLP 204
+ S+ + V + +P+ L+ RA+ K E +P + + + TS + +L P
Sbjct: 193 ARSDSENVYEAIPD-LRCPPRAKSP-KQVDEPPEPVYANVERQPQVTSPRSAAAPPRLSP 250
Query: 205 GWVEAKDPASGASYYYNESTGKSQWERPVE--------TSSRAQTPSHLSLMEDWIEAVD 256
W D +G YYYN TG + WE P E T+SRA S SL +W + D
Sbjct: 251 VWETHTDAGTGRPYYYNPDTGVTTWESPFEAPEGATSPTTSRASVGSGESLETEWGQYWD 310
Query: 257 ETSGHKYYYNKRTHVSQW 274
E SG ++YN T + W
Sbjct: 311 EESGRVFFYNPLTGETVW 328
>UNIPROTKB|Q6TLK4 [details] [associations]
symbol:Arhgap27 "Rho GTPase-activating protein 27"
species:10116 "Rattus norvegicus" [GO:0005543 "phospholipid
binding" evidence=IEA] [GO:0007165 "signal transduction"
evidence=IEA] Pfam:PF00169 InterPro:IPR000198 InterPro:IPR001202
InterPro:IPR001452 InterPro:IPR001849 InterPro:IPR008936
Pfam:PF00397 Pfam:PF00620 PROSITE:PS01159 PROSITE:PS50002
PROSITE:PS50003 PROSITE:PS50020 PROSITE:PS50238 SMART:SM00233
SMART:SM00324 SMART:SM00326 SMART:SM00456 EMBL:AY394725 RGD:735202
GO:GO:0006898 GO:GO:0005737 GO:GO:0007165 GO:GO:0016020
Gene3D:1.10.555.10 SUPFAM:SSF48350 GO:GO:0005543 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0017124 GO:GO:0005622 SUPFAM:SSF50044
GO:GO:0030675 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0043089
eggNOG:NOG279563 InterPro:IPR015767 PANTHER:PTHR23181
HOGENOM:HOG000294167 HOVERGEN:HBG005328 CTD:201176
OrthoDB:EOG4X3H0P IPI:IPI00400617 RefSeq:NP_942054.1
UniGene:Rn.17895 HSSP:Q8C863 ProteinModelPortal:Q6TLK4
STRING:Q6TLK4 PhosphoSite:Q6TLK4 PRIDE:Q6TLK4 GeneID:303583
KEGG:rno:303583 InParanoid:Q6TLK4 NextBio:651663
ArrayExpress:Q6TLK4 Genevestigator:Q6TLK4 Uniprot:Q6TLK4
Length = 869
Score = 136 (52.9 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 42/138 (30%), Positives = 64/138 (46%)
Query: 148 SESEQKPVTKELPEYLKQRLRARGILKDTSENGDP--PRINNKLESTSAQLDDRE-KLLP 204
+ S+ + V + +P+ L+ RA+ K E +P + + + TS + +L P
Sbjct: 193 ARSDSENVYEAIPD-LRCPPRAKSP-KQVDEPPEPVYANVERQPQVTSPRSAAAPPRLSP 250
Query: 205 GWVEAKDPASGASYYYNESTGKSQWERPVE--------TSSRAQTPSHLSLMEDWIEAVD 256
W D +G YYYN TG + WE P E T+SRA S SL +W + D
Sbjct: 251 VWETHTDAGTGRPYYYNPDTGVTTWESPFEAPEGATSPTTSRASVGSGESLETEWGQYWD 310
Query: 257 ETSGHKYYYNKRTHVSQW 274
E SG ++YN T + W
Sbjct: 311 EESGRVFFYNPLTGETVW 328
>UNIPROTKB|F5H578 [details] [associations]
symbol:PRPF40A "Pre-mRNA-processing factor 40 homolog A"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0005634 Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AC079344
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 EMBL:AC012443 HGNC:HGNC:16463 ChiTaRS:PRPF40A
IPI:IPI01018842 ProteinModelPortal:F5H578 SMR:F5H578 PRIDE:F5H578
Ensembl:ENST00000545856 UCSC:uc002tyj.2 ArrayExpress:F5H578
Bgee:F5H578 Uniprot:F5H578
Length = 448
Score = 132 (51.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 32/97 (32%), Positives = 49/97 (50%)
Query: 182 PPRINNKLESTSAQLDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQT 241
PP +N+ ++ + + + W E K P G +YYYN T +S WE+P + +T
Sbjct: 126 PPGVNS-MDVAAGTASGAKSM---WTEHKSP-DGRTYYYNTETKQSTWEKPDDL----KT 176
Query: 242 PSHLSLME-DWIEAVDETSGHKYYYNKRTHVSQWVHP 277
P+ L + W E + SG YYYN +T S+W P
Sbjct: 177 PAEQLLSKCPWKEYKSD-SGKPYYYNSQTKESRWAKP 212
>UNIPROTKB|E9PNT2 [details] [associations]
symbol:ARHGAP27 "Rho GTPase-activating protein 27"
species:9606 "Homo sapiens" [GO:0005543 "phospholipid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0007165
"signal transduction" evidence=IEA] [GO:0005096 "GTPase activator
activity" evidence=IEA] Pfam:PF00169 InterPro:IPR000198
InterPro:IPR001202 InterPro:IPR001849 InterPro:IPR008936
Pfam:PF00397 Pfam:PF00620 PROSITE:PS50003 PROSITE:PS50020
PROSITE:PS50238 SMART:SM00233 SMART:SM00324 SMART:SM00456
GO:GO:0007165 Gene3D:1.10.555.10 SUPFAM:SSF48350 GO:GO:0005543
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0005622
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR015767
PANTHER:PTHR23181 EMBL:AC003070 EMBL:AC091132 HGNC:HGNC:31813
IPI:IPI01011796 ProteinModelPortal:E9PNT2 SMR:E9PNT2
Ensembl:ENST00000532038 ArrayExpress:E9PNT2 Bgee:E9PNT2
Uniprot:E9PNT2
Length = 667
Score = 134 (52.2 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 29/87 (33%), Positives = 41/87 (47%)
Query: 204 PGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTP--------SHLSLMEDWIEAV 255
P W D +G YYYN TG + WE P E + A +P SH+SL +W +
Sbjct: 50 PVWETHTDAGTGRPYYYNPDTGVTTWESPFEAAEGAASPATSPASVDSHVSLETEWGQYW 109
Query: 256 DETSGHKYYYNKRTHVSQWVHPGSSKP 282
DE S ++YN T + W ++P
Sbjct: 110 DEESRRVFFYNPLTGETAWEDEAENEP 136
>UNIPROTKB|B7Z4M2 [details] [associations]
symbol:WBP4 "cDNA FLJ52917, highly similar to WW
domain-binding protein 4" species:9606 "Homo sapiens" [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001202
InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 GO:GO:0008270 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL157877 HOVERGEN:HBG053152 UniGene:Hs.411300
HGNC:HGNC:12739 EMBL:AK297536 IPI:IPI00922785 SMR:B7Z4M2
STRING:B7Z4M2 Ensembl:ENST00000542082 UCSC:uc010tfd.2
Uniprot:B7Z4M2
Length = 355
Score = 129 (50.5 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 36/127 (28%), Positives = 57/127 (44%)
Query: 182 PPRINNKLESTSAQLDDREK-LLPG-WVEAKDPASGASYYYNESTGKSQWERPVETSSRA 239
PP + + + R+K G WVE + G YYY+ +G SQWE+P
Sbjct: 81 PPTSTSNQQKEKKEKKKRKKDPSKGRWVEGIT-SEGYHYYYDLISGASQWEKPEGFQGDL 139
Query: 240 QTPSHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGSSKPVASEQSDSNASRNTTNG 299
+ + ++ W+E + E G YYYN T S+W P P S+ S + N+
Sbjct: 140 KKTAVKTV---WVEGLSE-DGFTYYYNTETGESRWEKPDDFIPHTSDLPSSKVNENSLGT 195
Query: 300 IWDNPSS 306
+ ++ SS
Sbjct: 196 LDESKSS 202
>UNIPROTKB|F8WBX1 [details] [associations]
symbol:ARHGAP27 "Rho GTPase-activating protein 27"
species:9606 "Homo sapiens" [GO:0005543 "phospholipid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0007165
"signal transduction" evidence=IEA] [GO:0005096 "GTPase activator
activity" evidence=IEA] Pfam:PF00169 InterPro:IPR000198
InterPro:IPR001202 InterPro:IPR001452 InterPro:IPR001849
InterPro:IPR008936 Pfam:PF00397 Pfam:PF00620 PROSITE:PS50002
PROSITE:PS50003 PROSITE:PS50020 PROSITE:PS50238 SMART:SM00233
SMART:SM00324 SMART:SM00326 SMART:SM00456 GO:GO:0007165
Gene3D:1.10.555.10 SUPFAM:SSF48350 GO:GO:0005543 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0005622 SUPFAM:SSF50044 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR015767 PANTHER:PTHR23181 EMBL:AC217778
EMBL:AC003070 IPI:IPI01022712 ProteinModelPortal:F8WBX1 SMR:F8WBX1
Ensembl:ENST00000549653 UCSC:uc010dak.3 ArrayExpress:F8WBX1
Bgee:F8WBX1 Uniprot:F8WBX1
Length = 862
Score = 134 (52.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 29/87 (33%), Positives = 41/87 (47%)
Query: 204 PGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTP--------SHLSLMEDWIEAV 255
P W D +G YYYN TG + WE P E + A +P SH+SL +W +
Sbjct: 250 PVWETHTDAGTGRPYYYNPDTGVTTWESPFEAAEGAASPATSPASVDSHVSLETEWGQYW 309
Query: 256 DETSGHKYYYNKRTHVSQWVHPGSSKP 282
DE S ++YN T + W ++P
Sbjct: 310 DEESRRVFFYNPLTGETAWEDEAENEP 336
>UNIPROTKB|E9PIR1 [details] [associations]
symbol:ARHGAP27 "Rho GTPase-activating protein 27"
species:9606 "Homo sapiens" [GO:0005543 "phospholipid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0007165
"signal transduction" evidence=IEA] [GO:0005096 "GTPase activator
activity" evidence=IEA] Pfam:PF00169 InterPro:IPR000198
InterPro:IPR001202 InterPro:IPR001452 InterPro:IPR001849
InterPro:IPR008936 Pfam:PF00397 Pfam:PF00620 PROSITE:PS50002
PROSITE:PS50003 PROSITE:PS50020 PROSITE:PS50238 SMART:SM00233
SMART:SM00324 SMART:SM00326 SMART:SM00456 GO:GO:0007165
Gene3D:1.10.555.10 SUPFAM:SSF48350 GO:GO:0005543 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0005622 SUPFAM:SSF50044 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR015767 PANTHER:PTHR23181 EMBL:AC003070
EMBL:AC091132 IPI:IPI00885078 HGNC:HGNC:31813
ProteinModelPortal:E9PIR1 SMR:E9PIR1 Ensembl:ENST00000532891
ArrayExpress:E9PIR1 Bgee:E9PIR1 Uniprot:E9PIR1
Length = 867
Score = 134 (52.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 29/87 (33%), Positives = 41/87 (47%)
Query: 204 PGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTP--------SHLSLMEDWIEAV 255
P W D +G YYYN TG + WE P E + A +P SH+SL +W +
Sbjct: 250 PVWETHTDAGTGRPYYYNPDTGVTTWESPFEAAEGAASPATSPASVDSHVSLETEWGQYW 309
Query: 256 DETSGHKYYYNKRTHVSQWVHPGSSKP 282
DE S ++YN T + W ++P
Sbjct: 310 DEESRRVFFYNPLTGETAWEDEAENEP 336
>UNIPROTKB|O75554 [details] [associations]
symbol:WBP4 "WW domain-binding protein 4" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0070064 "proline-rich region binding"
evidence=IPI] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 GO:GO:0005886 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0005681 GO:GO:0003676 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0045292 EMBL:AL157877 eggNOG:COG5104
CTD:11193 HOGENOM:HOG000067962 HOVERGEN:HBG053152 KO:K13220
OrthoDB:EOG4R7VBT EMBL:AF071185 EMBL:BC104879 EMBL:BC108310
IPI:IPI00026957 RefSeq:NP_009118.1 UniGene:Hs.411300 PDB:2DK1
PDB:2JXW PDBsum:2DK1 PDBsum:2JXW ProteinModelPortal:O75554
SMR:O75554 MINT:MINT-127038 STRING:O75554 PhosphoSite:O75554
PaxDb:O75554 PRIDE:O75554 Ensembl:ENST00000379487 GeneID:11193
KEGG:hsa:11193 UCSC:uc001uxt.3 GeneCards:GC13P041635
HGNC:HGNC:12739 HPA:HPA038965 MIM:604981 neXtProt:NX_O75554
PharmGKB:PA37350 InParanoid:O75554 OMA:HEEVDLE PhylomeDB:O75554
EvolutionaryTrace:O75554 GenomeRNAi:11193 NextBio:42605
ArrayExpress:O75554 Bgee:O75554 CleanEx:HS_WBP4
Genevestigator:O75554 GermOnline:ENSG00000120688 Uniprot:O75554
Length = 376
Score = 129 (50.5 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 36/127 (28%), Positives = 57/127 (44%)
Query: 182 PPRINNKLESTSAQLDDREK-LLPG-WVEAKDPASGASYYYNESTGKSQWERPVETSSRA 239
PP + + + R+K G WVE + G YYY+ +G SQWE+P
Sbjct: 102 PPTSTSNQQKEKKEKKKRKKDPSKGRWVEGIT-SEGYHYYYDLISGASQWEKPEGFQGDL 160
Query: 240 QTPSHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGSSKPVASEQSDSNASRNTTNG 299
+ + ++ W+E + E G YYYN T S+W P P S+ S + N+
Sbjct: 161 KKTAVKTV---WVEGLSE-DGFTYYYNTETGESRWEKPDDFIPHTSDLPSSKVNENSLGT 216
Query: 300 IWDNPSS 306
+ ++ SS
Sbjct: 217 LDESKSS 223
>UNIPROTKB|Q6ZUM4 [details] [associations]
symbol:ARHGAP27 "Rho GTPase-activating protein 27"
species:9606 "Homo sapiens" [GO:0005543 "phospholipid binding"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0043089 "positive regulation of Cdc42 GTPase
activity" evidence=ISS] [GO:0005622 "intracellular" evidence=ISS]
[GO:0006898 "receptor-mediated endocytosis" evidence=ISS]
[GO:0017124 "SH3 domain binding" evidence=ISS] [GO:0030675 "Rac
GTPase activator activity" evidence=ISS] [GO:0032855 "positive
regulation of Rac GTPase activity" evidence=ISS] Pfam:PF00169
InterPro:IPR000198 InterPro:IPR001202 InterPro:IPR001452
InterPro:IPR001849 InterPro:IPR008936 Pfam:PF00397 Pfam:PF00620
PROSITE:PS01159 PROSITE:PS50002 PROSITE:PS50003 PROSITE:PS50020
PROSITE:PS50238 SMART:SM00233 SMART:SM00324 SMART:SM00326
SMART:SM00456 GO:GO:0006898 GO:GO:0005737 GO:GO:0007165
GO:GO:0016020 Gene3D:1.10.555.10 SUPFAM:SSF48350 GO:GO:0005543
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0017124 GO:GO:0005622
SUPFAM:SSF50044 GO:GO:0030675 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0043089 eggNOG:NOG279563 InterPro:IPR015767 PANTHER:PTHR23181
HOVERGEN:HBG005328 EMBL:AF258593 EMBL:AK125535 EMBL:AK290650
EMBL:AC003070 EMBL:AC091132 EMBL:BC067345 EMBL:BC101388
EMBL:BC101389 EMBL:BC101390 EMBL:BC101391 IPI:IPI00398170
IPI:IPI00884998 IPI:IPI00885078 IPI:IPI00885118 RefSeq:NP_777579.2
RefSeq:NP_954976.1 UniGene:Hs.205326 PDB:3PP2 PDBsum:3PP2
ProteinModelPortal:Q6ZUM4 SMR:Q6ZUM4 IntAct:Q6ZUM4 STRING:Q6ZUM4
PhosphoSite:Q6ZUM4 DMDM:300669680 PaxDb:Q6ZUM4 PRIDE:Q6ZUM4
Ensembl:ENST00000290470 Ensembl:ENST00000376922
Ensembl:ENST00000428638 Ensembl:ENST00000442348
Ensembl:ENST00000455881 Ensembl:ENST00000528273
Ensembl:ENST00000528384 GeneID:201176 KEGG:hsa:201176
UCSC:uc002iix.3 UCSC:uc010dal.3 CTD:201176 GeneCards:GC17M043476
HGNC:HGNC:31813 HPA:HPA023919 MIM:610591 neXtProt:NX_Q6ZUM4
PharmGKB:PA134873327 OMA:KGYIRDQ OrthoDB:EOG4X3H0P
GenomeRNAi:201176 NextBio:90073 ArrayExpress:Q6ZUM4 Bgee:Q6ZUM4
CleanEx:HS_ARHGAP27 Genevestigator:Q6ZUM4 Uniprot:Q6ZUM4
Length = 889
Score = 134 (52.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 29/87 (33%), Positives = 41/87 (47%)
Query: 204 PGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTP--------SHLSLMEDWIEAV 255
P W D +G YYYN TG + WE P E + A +P SH+SL +W +
Sbjct: 250 PVWETHTDAGTGRPYYYNPDTGVTTWESPFEAAEGAASPATSPASVDSHVSLETEWGQYW 309
Query: 256 DETSGHKYYYNKRTHVSQWVHPGSSKP 282
DE S ++YN T + W ++P
Sbjct: 310 DEESRRVFFYNPLTGETAWEDEAENEP 336
>RGD|1309927 [details] [associations]
symbol:Wwox "WW domain-containing oxidoreductase" species:10116
"Rattus norvegicus" [GO:0001649 "osteoblast differentiation"
evidence=ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739
"mitochondrion" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO] [GO:0005829 "cytosol" evidence=ISO] [GO:0006917
"induction of apoptosis" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=ISO] [GO:0043065 "positive regulation
of apoptotic process" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048705 "skeletal system morphogenesis"
evidence=ISO] [GO:0071560 "cellular response to transforming growth
factor beta stimulus" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0005902 "microvillus" evidence=ISO]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 RGD:1309927 Gene3D:2.20.70.10 SUPFAM:SSF51045
IPI:IPI00870383 Ensembl:ENSRNOT00000016143 UCSC:RGD:1309927
ArrayExpress:D4A8N9 Uniprot:D4A8N9
Length = 141
Score = 106 (42.4 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 34/116 (29%), Positives = 54/116 (46%)
Query: 197 DDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTPSHLSLMEDWIEAVD 256
D ++L PGW E + G YY N + K+QWE P +T R + L W + D
Sbjct: 13 DSEDELPPGW-EERTTKDGWVYYANHTEEKTQWEHP-KTGKRKRVAGDLPY--GWEQETD 68
Query: 257 ETSGHKYYY---NKRTHVSQWVHPGSSKPVASEQSDSNASRNTTNGIWDNPSSGLE 309
E +G ++ NKRT ++ P + V D N ++ TT +D ++ +E
Sbjct: 69 E-NGQVFFVDHINKRT---TYLDPRLAFTV-----DDNPTKPTTRQRYDGSTTAME 115
>TAIR|locus:2194894 [details] [associations]
symbol:PRP40A "pre-mRNA-processing protein 40A"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0005886 "plasma membrane" evidence=ISM]
[GO:0016592 "mediator complex" evidence=IDA] [GO:0008380 "RNA
splicing" evidence=IPI] [GO:0070063 "RNA polymerase binding"
evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0006355 GO:GO:0008380 GO:GO:0006351 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AC007915 GO:GO:0016592 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
EMBL:AC020576 KO:K12821 InterPro:IPR027237 PANTHER:PTHR11864:SF0
EMBL:AK316856 IPI:IPI00526992 IPI:IPI00548835 IPI:IPI00892236
IPI:IPI00900521 RefSeq:NP_001117438.1 RefSeq:NP_175113.2
UniGene:At.14888 UniGene:At.28268 HSSP:Q61051
ProteinModelPortal:B6EUA9 SMR:B6EUA9 PRIDE:B6EUA9
EnsemblPlants:AT1G44910.1 GeneID:841057 KEGG:ath:AT1G44910
TAIR:At1g44910 eggNOG:COG5104 OMA:WEKPLEL PhylomeDB:B6EUA9
ProtClustDB:CLSN2681520 Genevestigator:B6EUA9 Uniprot:B6EUA9
Length = 958
Score = 130 (50.8 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 33/101 (32%), Positives = 48/101 (47%)
Query: 206 WVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTPSHLSLMEDWIEAVDETSGHKYYY 265
W E A G YYYN+ T +S WE+P+E + + ++ W E G KYYY
Sbjct: 190 WQEHTS-ADGRKYYYNKRTKQSNWEKPLELMTPLERADASTV---WKEFTTP-EGKKYYY 244
Query: 266 NKRTHVSQWVHPGSSKPVASEQSDSNASRNTTNGIWDNPSS 306
NK T S+W P K +A EQ+ + + + + P S
Sbjct: 245 NKVTKESKWTIPEDLK-LAREQAQLASEKTSLSEAGSTPLS 284
Score = 49 (22.3 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 348 NKQQQTSNSANAKED--SGKNGPKQSWKPPMGRGN-RKDSRKRAFSEDDE 394
+++ + + N+ ED S ++ +S K GN RK SRK A S + E
Sbjct: 881 DRKHRRRHHNNSDEDVSSDRDDRDESKKSSRKHGNDRKKSRKHANSPESE 930
Score = 40 (19.1 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 348 NKQQQTSNSANAKEDSGKNGPKQSWKPPMGRGNRKDSRKRAF 389
N+ + S N K + G K + + PM ++++ K AF
Sbjct: 371 NEAENKEMSVNGKANLSPAGDKANVEEPMVYATKQEA-KAAF 411
>UNIPROTKB|F1RR27 [details] [associations]
symbol:ARHGAP27 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007165 "signal transduction" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005543 "phospholipid binding"
evidence=IEA] Pfam:PF00169 InterPro:IPR000198 InterPro:IPR001202
InterPro:IPR001452 InterPro:IPR001849 InterPro:IPR008936
Pfam:PF00397 Pfam:PF00620 PROSITE:PS50002 PROSITE:PS50003
PROSITE:PS50020 PROSITE:PS50238 SMART:SM00233 SMART:SM00324
SMART:SM00326 SMART:SM00456 GO:GO:0007165 Gene3D:1.10.555.10
SUPFAM:SSF48350 GO:GO:0005543 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0005622 SUPFAM:SSF50044 GeneTree:ENSGT00700000104029
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR015767
PANTHER:PTHR23181 OMA:KGYIRDQ EMBL:AEMK01190827 EMBL:FP016139
EMBL:FP312970 Ensembl:ENSSSCT00000018864 Uniprot:F1RR27
Length = 879
Score = 129 (50.5 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 29/87 (33%), Positives = 39/87 (44%)
Query: 204 PGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTP--------SHLSLMEDWIEAV 255
P W D +G YYYN TG + WE P E + A +P SH SL +W +
Sbjct: 249 PVWETHTDAGTGRPYYYNPDTGVTTWESPFEAAEGAASPATSPASVGSHESLETEWGQYW 308
Query: 256 DETSGHKYYYNKRTHVSQWVHPGSSKP 282
DE S ++YN T + W +P
Sbjct: 309 DEESRRVFFYNPLTGETAWEDESEDQP 335
Score = 47 (21.6 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 434 QRPYPSPGAVLRKNAEIASQSKKSSPHFTAISKRGDGSDGLGEA 477
Q P P+P ++ RK+++ + ++SP G +GLGEA
Sbjct: 442 QVPVPAPRSI-RKSSQDSETPAQASP------PEEKGREGLGEA 478
>ZFIN|ZDB-GENE-030131-274 [details] [associations]
symbol:prpf40a "PRP40 pre-mRNA processing factor 40
homolog A (yeast)" species:7955 "Danio rerio" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 ZFIN:ZDB-GENE-030131-274
Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
HSSP:O75400 KO:K12821 eggNOG:COG5104 OMA:WEKPLEL CTD:55660
HOVERGEN:HBG059634 GeneTree:ENSGT00530000062987
HOGENOM:HOG000231802 OrthoDB:EOG418BN6 EMBL:CR925815 EMBL:BC049307
IPI:IPI00503410 RefSeq:NP_938170.1 UniGene:Dr.76804 SMR:Q7ZUE4
STRING:Q7ZUE4 Ensembl:ENSDART00000081326 GeneID:321555
KEGG:dre:321555 InParanoid:Q7ZUE4 NextBio:20807424 Uniprot:Q7ZUE4
Length = 851
Score = 136 (52.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 34/87 (39%), Positives = 43/87 (49%)
Query: 191 STSAQLDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTPSHLSLMED 250
ST + D++ K W E K G YYYN T +S WE+P E S A+ LS
Sbjct: 97 STESSPDEQPKKKSVWTEHKS-LDGKIYYYNTETKQSTWEKPDELKSPAE--QMLSKCP- 152
Query: 251 WIEAVDETSGHKYYYNKRTHVSQWVHP 277
W E +T G YYYN +T S+W P
Sbjct: 153 WKEYKSDT-GKPYYYNSQTKESRWTKP 178
Score = 38 (18.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 389 FSEDDELDPMD 399
F+ED+EL MD
Sbjct: 457 FAEDEELQNMD 467
Score = 37 (18.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 380 NRKDSRKRAFSEDDE 394
+RK SR R+ SE +E
Sbjct: 716 HRKRSRSRSGSESEE 730
>UNIPROTKB|Q5BIN5 [details] [associations]
symbol:PIN1 "Peptidyl-prolyl cis-trans isomerase
NIMA-interacting 1" species:9913 "Bos taurus" [GO:0042127
"regulation of cell proliferation" evidence=ISS] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:2000146 "negative regulation of cell motility" evidence=IEA]
[GO:0070373 "negative regulation of ERK1 and ERK2 cascade"
evidence=IEA] [GO:0060393 "regulation of pathway-restricted SMAD
protein phosphorylation" evidence=IEA] [GO:0051443 "positive
regulation of ubiquitin-protein ligase activity" evidence=IEA]
[GO:0050816 "phosphothreonine binding" evidence=IEA] [GO:0050815
"phosphoserine binding" evidence=IEA] [GO:0032794 "GTPase
activating protein binding" evidence=IEA] [GO:0032465 "regulation
of cytokinesis" evidence=IEA] [GO:0032321 "positive regulation of
Rho GTPase activity" evidence=IEA] [GO:0031434 "mitogen-activated
protein kinase kinase binding" evidence=IEA] [GO:0030512 "negative
regulation of transforming growth factor beta receptor signaling
pathway" evidence=IEA] [GO:0030496 "midbody" evidence=IEA]
[GO:0001934 "positive regulation of protein phosphorylation"
evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] InterPro:IPR000297
InterPro:IPR001202 Pfam:PF00397 Pfam:PF00639 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50198 SMART:SM00456 GO:GO:0005737
GO:GO:0006457 GO:GO:0016607 GO:GO:0042127 GO:GO:0007049
GO:GO:0070373 GO:GO:0032321 GO:GO:0001934 GO:GO:0030496
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0030512 GO:GO:0051443
GO:GO:0032465 GO:GO:0060393 GO:GO:0003755 eggNOG:COG0760
GeneTree:ENSGT00640000091578 KO:K09578 InterPro:IPR023058
PROSITE:PS01096 HOGENOM:HOG000275331 GO:GO:2000146 EMBL:BT021189
EMBL:BC112583 IPI:IPI00701065 RefSeq:NP_001029804.1 UniGene:Bt.5583
ProteinModelPortal:Q5BIN5 SMR:Q5BIN5 STRING:Q5BIN5 PRIDE:Q5BIN5
Ensembl:ENSBTAT00000022592 GeneID:535470 KEGG:bta:535470 CTD:5300
HOVERGEN:HBG002101 InParanoid:Q5BIN5 OMA:DCSSARK OrthoDB:EOG4VMFGM
NextBio:20876760 Uniprot:Q5BIN5
Length = 163
Score = 110 (43.8 bits), Expect = 0.00021, P = 0.00021
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 198 DREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
D EKL PGW + +SG YY+N T SQWERP SS
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSS 42
>UNIPROTKB|F1P6C1 [details] [associations]
symbol:PIN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] InterPro:IPR000297 InterPro:IPR001202 Pfam:PF00397
Pfam:PF00639 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50198
SMART:SM00456 GO:GO:0006457 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0003755 GO:GO:0000413 GeneTree:ENSGT00640000091578 KO:K09578
InterPro:IPR023058 PROSITE:PS01096 CTD:5300 OMA:DCSSARK
EMBL:AAEX03012431 RefSeq:XP_542080.1 Ensembl:ENSCAFT00000028529
GeneID:484963 KEGG:cfa:484963 Uniprot:F1P6C1
Length = 163
Score = 110 (43.8 bits), Expect = 0.00021, P = 0.00021
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 198 DREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
D EKL PGW + +SG YY+N T SQWERP SS
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSS 42
>UNIPROTKB|Q13526 [details] [associations]
symbol:PIN1 "Peptidyl-prolyl cis-trans isomerase
NIMA-interacting 1" species:9606 "Homo sapiens" [GO:0006457
"protein folding" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0042127 "regulation of cell proliferation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0001934 "positive regulation of protein
phosphorylation" evidence=IGI] [GO:0030496 "midbody" evidence=IDA]
[GO:0032465 "regulation of cytokinesis" evidence=IGI;IMP]
[GO:0007088 "regulation of mitosis" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0019221 "cytokine-mediated
signaling pathway" evidence=TAS] [GO:0032480 "negative regulation
of type I interferon production" evidence=TAS] [GO:0045087 "innate
immune response" evidence=TAS] [GO:0003755 "peptidyl-prolyl
cis-trans isomerase activity" evidence=IDA] [GO:0030512 "negative
regulation of transforming growth factor beta receptor signaling
pathway" evidence=IDA] [GO:0051443 "positive regulation of
ubiquitin-protein ligase activity" evidence=IDA] [GO:0060393
"regulation of pathway-restricted SMAD protein phosphorylation"
evidence=IDA] [GO:0050815 "phosphoserine binding" evidence=IDA]
[GO:0050816 "phosphothreonine binding" evidence=IDA;IPI]
[GO:0032794 "GTPase activating protein binding" evidence=IPI]
[GO:0070373 "negative regulation of ERK1 and ERK2 cascade"
evidence=IDA] [GO:0032321 "positive regulation of Rho GTPase
activity" evidence=IMP] [GO:2000146 "negative regulation of cell
motility" evidence=IDA] [GO:0031434 "mitogen-activated protein
kinase kinase binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000413 "protein peptidyl-prolyl isomerization"
evidence=IDA] InterPro:IPR000297 InterPro:IPR001202 Pfam:PF00397
Pfam:PF00639 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50198
SMART:SM00456 GO:GO:0005737 Reactome:REACT_6900 GO:GO:0007088
GO:GO:0006457 GO:GO:0005654 GO:GO:0016607 GO:GO:0045087
GO:GO:0019221 GO:GO:0042127 GO:GO:0007049 GO:GO:0070373
GO:GO:0032321 GO:GO:0001934 GO:GO:0030496 EMBL:CH471106
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0030512 GO:GO:0032480
GO:GO:0051443 GO:GO:0032465 GO:GO:0050815 GO:GO:0060393
BRENDA:5.2.1.8 GO:GO:0003755 eggNOG:COG0760 KO:K09578
InterPro:IPR023058 PROSITE:PS01096 HOGENOM:HOG000275331
GO:GO:2000146 GO:GO:0050816 CTD:5300 HOVERGEN:HBG002101 OMA:DCSSARK
OrthoDB:EOG4VMFGM EMBL:U49070 EMBL:CR407654 EMBL:BT019331
EMBL:AK291074 EMBL:BC002899 IPI:IPI00013723 PIR:S68520
RefSeq:NP_006212.1 UniGene:Hs.465849 PDB:1F8A PDB:1I6C PDB:1I8G
PDB:1I8H PDB:1NMV PDB:1NMW PDB:1PIN PDB:1ZCN PDB:2F21 PDB:2ITK
PDB:2KBU PDB:2KCF PDB:2LB3 PDB:2Q5A PDB:2XP3 PDB:2XP4 PDB:2XP5
PDB:2XP6 PDB:2XP7 PDB:2XP8 PDB:2XP9 PDB:2XPA PDB:2XPB PDB:2ZQS
PDB:2ZQT PDB:2ZQU PDB:2ZQV PDB:2ZR4 PDB:2ZR5 PDB:2ZR6 PDB:3I6C
PDB:3IK8 PDB:3IKD PDB:3IKG PDB:3JYJ PDB:3KAB PDB:3KAC PDB:3KAD
PDB:3KAF PDB:3KAG PDB:3KAH PDB:3KAI PDB:3KCE PDB:3NTP PDB:3ODK
PDB:3OOB PDB:3TC5 PDB:3TCZ PDB:3TDB PDBsum:1F8A PDBsum:1I6C
PDBsum:1I8G PDBsum:1I8H PDBsum:1NMV PDBsum:1NMW PDBsum:1PIN
PDBsum:1ZCN PDBsum:2F21 PDBsum:2ITK PDBsum:2KBU PDBsum:2KCF
PDBsum:2LB3 PDBsum:2Q5A PDBsum:2XP3 PDBsum:2XP4 PDBsum:2XP5
PDBsum:2XP6 PDBsum:2XP7 PDBsum:2XP8 PDBsum:2XP9 PDBsum:2XPA
PDBsum:2XPB PDBsum:2ZQS PDBsum:2ZQT PDBsum:2ZQU PDBsum:2ZQV
PDBsum:2ZR4 PDBsum:2ZR5 PDBsum:2ZR6 PDBsum:3I6C PDBsum:3IK8
PDBsum:3IKD PDBsum:3IKG PDBsum:3JYJ PDBsum:3KAB PDBsum:3KAC
PDBsum:3KAD PDBsum:3KAF PDBsum:3KAG PDBsum:3KAH PDBsum:3KAI
PDBsum:3KCE PDBsum:3NTP PDBsum:3ODK PDBsum:3OOB PDBsum:3TC5
PDBsum:3TCZ PDBsum:3TDB ProteinModelPortal:Q13526 SMR:Q13526
DIP:DIP-29306N IntAct:Q13526 MINT:MINT-86298 STRING:Q13526
PhosphoSite:Q13526 DMDM:3024406 PaxDb:Q13526 PeptideAtlas:Q13526
PRIDE:Q13526 DNASU:5300 Ensembl:ENST00000247970 GeneID:5300
KEGG:hsa:5300 UCSC:uc002mml.2 GeneCards:GC19P009945 HGNC:HGNC:8988
HPA:CAB004528 HPA:CAB009326 MIM:601052 neXtProt:NX_Q13526
PharmGKB:PA33320 InParanoid:Q13526 PhylomeDB:Q13526
BindingDB:Q13526 ChEMBL:CHEMBL2288 EvolutionaryTrace:Q13526
GenomeRNAi:5300 NextBio:20486 ArrayExpress:Q13526 Bgee:Q13526
CleanEx:HS_PIN1 Genevestigator:Q13526 GermOnline:ENSG00000127445
Uniprot:Q13526
Length = 163
Score = 110 (43.8 bits), Expect = 0.00021, P = 0.00021
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 198 DREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
D EKL PGW + +SG YY+N T SQWERP SS
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSS 42
>UNIPROTKB|F1S3G5 [details] [associations]
symbol:PIN1 "Peptidyl-prolyl cis-trans isomerase NIMA
interacting 1" species:9823 "Sus scrofa" [GO:0006457 "protein
folding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] InterPro:IPR000297
InterPro:IPR001202 Pfam:PF00397 Pfam:PF00639 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50198 SMART:SM00456 GO:GO:0006457
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0003755 GO:GO:0000413
GeneTree:ENSGT00640000091578 KO:K09578 InterPro:IPR023058
PROSITE:PS01096 CTD:5300 OMA:DCSSARK EMBL:CU856567 EMBL:CU694567
EMBL:JF274983 EMBL:JF274984 RefSeq:NP_001231300.1
RefSeq:XP_003354110.1 UniGene:Ssc.6063 Ensembl:ENSSSCT00000014933
Ensembl:ENSSSCT00000030404 GeneID:100512827 GeneID:100621667
KEGG:ssc:100512827 KEGG:ssc:100621667 Uniprot:F1S3G5
Length = 163
Score = 110 (43.8 bits), Expect = 0.00021, P = 0.00021
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 198 DREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
D EKL PGW + +SG YY+N T SQWERP SS
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSS 42
>UNIPROTKB|F1MMB0 [details] [associations]
symbol:ARHGAP27 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007165 "signal transduction" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005543 "phospholipid binding"
evidence=IEA] Pfam:PF00169 InterPro:IPR000198 InterPro:IPR001202
InterPro:IPR001452 InterPro:IPR001849 InterPro:IPR008936
Pfam:PF00397 Pfam:PF00620 PROSITE:PS50002 PROSITE:PS50003
PROSITE:PS50020 PROSITE:PS50238 SMART:SM00233 SMART:SM00324
SMART:SM00326 SMART:SM00456 GO:GO:0007165 Gene3D:1.10.555.10
SUPFAM:SSF48350 GO:GO:0005543 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0005622 SUPFAM:SSF50044 GeneTree:ENSGT00700000104029
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR015767
PANTHER:PTHR23181 OMA:KGYIRDQ EMBL:DAAA02049262 EMBL:DAAA02049263
EMBL:DAAA02049264 EMBL:DAAA02049265 EMBL:DAAA02049266
EMBL:DAAA02049267 EMBL:DAAA02049268 EMBL:DAAA02049269
EMBL:DAAA02049270 IPI:IPI00866922 Ensembl:ENSBTAT00000010092
Uniprot:F1MMB0
Length = 865
Score = 130 (50.8 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 29/81 (35%), Positives = 39/81 (48%)
Query: 202 LLPGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTP--------SHLSLMEDWIE 253
L P WV + +G YYYN TG + WE P E + A +P SH SL +W +
Sbjct: 249 LSPAWVYHFEAGTGRPYYYNPDTGVTTWESPFEATEGAASPATSPASVGSHESLETEWGQ 308
Query: 254 AVDETSGHKYYYNKRTHVSQW 274
DE S ++YN T + W
Sbjct: 309 YWDEESHRVFFYNSLTGETAW 329
Score = 41 (19.5 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 448 AEIASQSKKSSPHFT-----AISKRGDGSDGL 474
AE+ + K S P F A+ RG DGL
Sbjct: 676 AELCEREKSSVPRFVQQSIRAVEARGLDIDGL 707
>UNIPROTKB|J3KTB1 [details] [associations]
symbol:GAS7 "Growth arrest-specific protein 7" species:9606
"Homo sapiens" [GO:0001726 "ruffle" evidence=IEA] [GO:0005884
"actin filament" evidence=IEA] [GO:0008360 "regulation of cell
shape" evidence=IEA] [GO:0030041 "actin filament polymerization"
evidence=IEA] [GO:0048812 "neuron projection morphogenesis"
evidence=IEA] [GO:0051015 "actin filament binding" evidence=IEA]
[GO:0051017 "actin filament bundle assembly" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AC000003
EMBL:AC005747 EMBL:AC026591 EMBL:AC083783 EMBL:AC107938
HGNC:HGNC:4169 ChiTaRS:GAS7 Ensembl:ENST00000584389 Uniprot:J3KTB1
Length = 128
Score = 98 (39.6 bits), Expect = 0.00031, P = 0.00031
Identities = 27/97 (27%), Positives = 40/97 (41%)
Query: 202 LLPGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTP-SHLSLMEDWIEAVDETSG 260
L PGW P G YY N +T ++ WERP + +P SH S + + SG
Sbjct: 15 LPPGWQSYLSP-QGRRYYVNTTTNETTWERPSSSPGIPASPGSHRSSLPPTVNGY-HASG 72
Query: 261 HKYYYNKRTHVSQWVHPGSSKPVASEQSDSNASRNTT 297
+ + H+S G S+ + S S+ T
Sbjct: 73 TPAHPPETAHMSVRKSTGDSQNLGSSSPSKKQSKENT 109
>UNIPROTKB|A6QPU2 [details] [associations]
symbol:ARHGAP12 "ARHGAP12 protein" species:9913 "Bos
taurus" [GO:0007165 "signal transduction" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005543 "phospholipid binding"
evidence=IEA] Pfam:PF00169 InterPro:IPR000198 InterPro:IPR001202
InterPro:IPR001452 InterPro:IPR001849 InterPro:IPR008936
Pfam:PF00397 Pfam:PF00620 PROSITE:PS50002 PROSITE:PS50003
PROSITE:PS50020 PROSITE:PS50238 SMART:SM00233 SMART:SM00324
SMART:SM00326 SMART:SM00456 GO:GO:0007165 Gene3D:1.10.555.10
SUPFAM:SSF48350 GO:GO:0005543 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0005622 SUPFAM:SSF50044 GeneTree:ENSGT00700000104029
Gene3D:2.20.70.10 SUPFAM:SSF51045 eggNOG:NOG279563
InterPro:IPR015767 PANTHER:PTHR23181 HOGENOM:HOG000294167
HOVERGEN:HBG005328 CTD:94134 OMA:GQVYIEV EMBL:DAAA02035598
EMBL:BC149489 IPI:IPI00866997 RefSeq:NP_001095711.1
UniGene:Bt.75443 SMR:A6QPU2 STRING:A6QPU2
Ensembl:ENSBTAT00000016846 GeneID:540393 KEGG:bta:540393
NextBio:20878606 Uniprot:A6QPU2
Length = 793
Score = 120 (47.3 bits), Expect = 0.00084, P = 0.00084
Identities = 51/189 (26%), Positives = 79/189 (41%)
Query: 98 PTGPNQGNTEIGNGYGVPGGVAYYNVQSTAITRTQGAGNDGMGQRNLKLDSESEQKPVTK 157
P P Q T + +G G + V+ + Q + G G ++ DSES
Sbjct: 165 PKVPGQNRTRL---FGHFPGPEFLEVEKPGFPQEQSCDSVGEGSERIQQDSESGD----- 216
Query: 158 ELPEYLKQRLRARGILKDTSENGDPPRINNKLE---STSA--QLDDREKL-LPG-WVEAK 210
EL +++RA D P N E S SA L + + G W K
Sbjct: 217 ELSSSSTEQIRAT--TPPNQGRPDSPVYANLQELKISQSALPPLPGSPAIQINGEWETHK 274
Query: 211 DPASGASYYYNESTGKSQWERPVET--SSRAQTPSHLSLMEDWIEAVDETSGHKYYYNKR 268
D +SG YYYN T + W+ P T ++ ++ S ++W++ VD+ G +YYY+
Sbjct: 275 D-SSGRCYYYNRGTQERTWKPPRWTRDTNTSKGDSQSPGDQEWLKHVDD-QGRQYYYSAD 332
Query: 269 THVSQWVHP 277
S+W P
Sbjct: 333 GSRSEWELP 341
>ZFIN|ZDB-GENE-050522-342 [details] [associations]
symbol:zgc:112384 "zgc:112384" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000690 InterPro:IPR001202 InterPro:IPR003604
InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451 SMART:SM00456
ZFIN:ZDB-GENE-050522-342 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 HOVERGEN:HBG053152
KO:K13220 EMBL:BC095798 IPI:IPI00483634 RefSeq:NP_001018530.1
UniGene:Dr.78282 ProteinModelPortal:Q501Z8 GeneID:553723
KEGG:dre:553723 InParanoid:Q501Z8 NextBio:20880452 Uniprot:Q501Z8
Length = 412
Score = 121 (47.7 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 36/92 (39%), Positives = 42/92 (45%)
Query: 206 WVEAKDPASGASYYYNESTGKSQWERP---VE--TSSRAQTPSHLSLMEDWIEAVDETSG 260
WV A G YYYN T +SQWE+P V+ SS A S W+EAV G
Sbjct: 129 WVSGTT-ADGLLYYYNTLTAESQWEKPDGFVDECVSSTAGQTQQESSGSAWMEAVSP-DG 186
Query: 261 HKYYYNKRTHVSQWVHPG--SSKPVASEQSDS 290
YYYN + S W P SS V+ DS
Sbjct: 187 FTYYYNTESGESSWEKPEELSSDDVSPPGVDS 218
Score = 37 (18.1 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 6/24 (25%), Positives = 16/24 (66%)
Query: 350 QQQTSNSANAKEDSGKNGPKQSWK 373
+ + ++A A +++ +GPK S++
Sbjct: 241 EDKAEDTAEADDNTPSSGPKISFR 264
>MGI|MGI:1925583 [details] [associations]
symbol:Prpf40b "PRP40 pre-mRNA processing factor 40 homolog
B (yeast)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 MGI:MGI:1925583 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
HSSP:O75400 KO:K12821 eggNOG:COG5104 HOVERGEN:HBG059634
GeneTree:ENSGT00530000062987 HOGENOM:HOG000231802 CTD:25766
ChiTaRS:PRPF40B EMBL:AF135440 EMBL:AK019183 EMBL:AK140075
EMBL:BC051961 EMBL:BC082994 IPI:IPI00377927 IPI:IPI00875105
IPI:IPI00876460 RefSeq:NP_061256.1 UniGene:Mm.358668
ProteinModelPortal:Q80W14 SMR:Q80W14 STRING:Q80W14
PhosphoSite:Q80W14 PaxDb:Q80W14 PRIDE:Q80W14
Ensembl:ENSMUST00000145482 GeneID:54614 KEGG:mmu:54614
UCSC:uc007xpg.1 UCSC:uc007xph.1 NextBio:311428 Bgee:Q80W14
Genevestigator:Q80W14 Uniprot:Q80W14
Length = 870
Score = 111 (44.1 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 29/93 (31%), Positives = 42/93 (45%)
Query: 206 WVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTPSHLSLME-DWIEAVDETSGHKYY 264
W E P G YYYN +S WE+P S+A+ L L + W E +T G YY
Sbjct: 98 WSEHVAP-DGRIYYYNADDKQSVWEKPSVLKSKAE----LLLSQCPWKEYKSDT-GKPYY 151
Query: 265 YNKRTHVSQWVHPGSSKPVASEQSDSNASRNTT 297
YN ++ S+W P + + +A + T
Sbjct: 152 YNNQSQESRWTRPKDLDDLEALVKQESAGKQQT 184
Score = 56 (24.8 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 25/89 (28%), Positives = 38/89 (42%)
Query: 333 RVLNLPQCQYLLTSLNKQQQTSNSANAKED---SGKNGPKQSWKPPMGRGNRKDSRKRAF 389
+VL +CQ+L T K + + K SG ++ PP R ++ R+R
Sbjct: 681 QVLEQTECQHLHTKGRKHGRKGKKHHRKRSHSPSGSESDEEELPPPSLRPPKR--RRRNP 738
Query: 390 SEDDELDPMDPSSYSDAPR-GGWVVGLKG 417
SE +PSS D+ GG +G G
Sbjct: 739 SESGS----EPSSSLDSVESGGAALGGPG 763
>UNIPROTKB|Q6NWY9 [details] [associations]
symbol:PRPF40B "Pre-mRNA-processing factor 40 homolog B"
species:9606 "Homo sapiens" [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 EMBL:CH471111 Gene3D:2.20.70.10
SUPFAM:SSF51045 Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846
SMART:SM00441 SUPFAM:SSF81698 HSSP:O75400 KO:K12821 eggNOG:COG5104
HOVERGEN:HBG059634 EMBL:AK027117 EMBL:AK123353 EMBL:AL137459
EMBL:AL834216 EMBL:BC050398 EMBL:BC067364 EMBL:AF049525
IPI:IPI00446681 IPI:IPI00465345 IPI:IPI00646529 IPI:IPI00789604
PIR:T46402 RefSeq:NP_001026868.2 UniGene:Hs.706827
ProteinModelPortal:Q6NWY9 SMR:Q6NWY9 STRING:Q6NWY9
PhosphoSite:Q6NWY9 DMDM:74736936 PaxDb:Q6NWY9 PRIDE:Q6NWY9
Ensembl:ENST00000261897 Ensembl:ENST00000380281 GeneID:25766
KEGG:hsa:25766 UCSC:uc001rup.1 UCSC:uc001ruq.1 UCSC:uc001rur.1
CTD:25766 GeneCards:GC12P049963 HGNC:HGNC:25031 HPA:HPA038426
HPA:HPA038599 neXtProt:NX_Q6NWY9 PharmGKB:PA143485582
InParanoid:Q6NWY9 OMA:QQLEEGP ChiTaRS:PRPF40B GenomeRNAi:25766
NextBio:46887 ArrayExpress:Q6NWY9 Bgee:Q6NWY9 CleanEx:HS_PRPF40B
Genevestigator:Q6NWY9 Uniprot:Q6NWY9
Length = 871
Score = 109 (43.4 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 27/73 (36%), Positives = 36/73 (49%)
Query: 206 WVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTPSHLSLME-DWIEAVDETSGHKYY 264
W E P G YYYN +S WE+P S+A+ L L + W E +T G YY
Sbjct: 98 WSEHVAP-DGRIYYYNADDKQSVWEKPSVLKSKAE----LLLSQCPWKEYKSDT-GKPYY 151
Query: 265 YNKRTHVSQWVHP 277
YN ++ S+W P
Sbjct: 152 YNNQSKESRWTRP 164
Score = 58 (25.5 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 25/89 (28%), Positives = 39/89 (43%)
Query: 333 RVLNLPQCQYLLTSLNKQQQTSNSANAKED---SGKNGPKQSWKPPMGRGNRKDSRKRAF 389
+VL +CQ+L T K + + K SG ++ PP R ++ R+R
Sbjct: 681 QVLEQTECQHLHTKGRKHGRKGKKHHHKRSHSPSGSESEEEELPPPSLRPPKR--RRRNP 738
Query: 390 SEDDELDPMDPSSYSDAPR-GGWVVGLKG 417
SE +PSS D+ GG +G +G
Sbjct: 739 SESGS----EPSSSLDSVESGGAALGGRG 763
>MGI|MGI:1346036 [details] [associations]
symbol:Pin1 "protein (peptidyl-prolyl cis/trans isomerase)
NIMA-interacting 1" species:10090 "Mus musculus" [GO:0000413
"protein peptidyl-prolyl isomerization" evidence=ISO] [GO:0001934
"positive regulation of protein phosphorylation" evidence=ISO]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0030496 "midbody" evidence=ISO]
[GO:0030512 "negative regulation of transforming growth factor beta
receptor signaling pathway" evidence=ISO] [GO:0031434
"mitogen-activated protein kinase kinase binding" evidence=ISO]
[GO:0032321 "positive regulation of Rho GTPase activity"
evidence=ISO] [GO:0032465 "regulation of cytokinesis"
evidence=ISO;IMP] [GO:0032794 "GTPase activating protein binding"
evidence=ISO] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0050815 "phosphoserine binding" evidence=ISO]
[GO:0050816 "phosphothreonine binding" evidence=ISO] [GO:0051443
"positive regulation of ubiquitin-protein ligase activity"
evidence=ISO] [GO:0060393 "regulation of pathway-restricted SMAD
protein phosphorylation" evidence=ISO] [GO:0070373 "negative
regulation of ERK1 and ERK2 cascade" evidence=ISO] [GO:2000146
"negative regulation of cell motility" evidence=ISO]
InterPro:IPR000297 InterPro:IPR001202 Pfam:PF00397 Pfam:PF00639
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50198 SMART:SM00456
MGI:MGI:1346036 GO:GO:0005737 GO:GO:0006457 GO:GO:0016607
GO:GO:0042127 GO:GO:0007049 GO:GO:0070373 GO:GO:0032321
GO:GO:0001934 GO:GO:0030496 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0030512 GO:GO:0051443 GO:GO:0032465 GO:GO:0060393
BRENDA:5.2.1.8 GO:GO:0003755 eggNOG:COG0760
GeneTree:ENSGT00640000091578 KO:K09578 InterPro:IPR023058
PROSITE:PS01096 HOGENOM:HOG000275331 GO:GO:2000146 CTD:5300
HOVERGEN:HBG002101 OMA:DCSSARK OrthoDB:EOG4VMFGM EMBL:AB009691
EMBL:AB009692 EMBL:AK002665 EMBL:AK003369 EMBL:AK054045
EMBL:AK150652 EMBL:AK160228 EMBL:BC038254 IPI:IPI00132093
PIR:JC7136 RefSeq:NP_075860.1 UniGene:Mm.7906
ProteinModelPortal:Q9QUR7 SMR:Q9QUR7 IntAct:Q9QUR7
MINT:MINT-4107624 STRING:Q9QUR7 PhosphoSite:Q9QUR7 PaxDb:Q9QUR7
PRIDE:Q9QUR7 Ensembl:ENSMUST00000034689 GeneID:23988 KEGG:mmu:23988
UCSC:uc008lkd.1 InParanoid:Q9QUR7 NextBio:303885 Bgee:Q9QUR7
Genevestigator:Q9QUR7 GermOnline:ENSMUSG00000032171 Uniprot:Q9QUR7
Length = 165
Score = 106 (42.4 bits), Expect = 0.00091, P = 0.00091
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 198 DREKLLPGWVEAKDPASGASYYYNESTGKSQWERP 232
D EKL PGW + +SG YY+N T SQWERP
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.308 0.127 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 478 478 0.00079 119 3 11 23 0.39 35
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 51
No. of states in DFA: 618 (66 KB)
Total size of DFA: 305 KB (2155 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 46.15u 0.15s 46.30t Elapsed: 00:00:02
Total cpu time: 46.15u 0.15s 46.30t Elapsed: 00:00:02
Start: Thu May 9 22:07:06 2013 End: Thu May 9 22:07:08 2013