BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046743
(478 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O6W|A Chain A, Solution Structure Of The Prp40 Ww Domain Pair Of The
Yeast Splicing Factor Prp40
Length = 75
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 206 WVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTPSHLSLMEDWIEAVDETSGHKYYY 265
W EAKD ASG YYYN T KS WE+P E S+ + L L E+ +A G YYY
Sbjct: 4 WKEAKD-ASGRIYYYNTLTKKSTWEKPKELISQEE----LLLRENGWKAAKTADGKVYYY 58
Query: 266 NKRTHVSQWVHPGSSK 281
N T + W P K
Sbjct: 59 NPTTRETSWTIPAFEK 74
>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding
Domains By O- Phosphorylated Natural Product Derivatives
Length = 166
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 194 AQLDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
+ + D EKL PGW +A +SG YY+N T SQWERP SS
Sbjct: 2 SHMADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSS 45
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 251 WIEAVDETSGHKYYYNKRTHVSQWVHP 277
W +A+ +SG YY+N T+ SQW P
Sbjct: 14 WEKAMSRSSGRVYYFNHITNASQWERP 40
>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|3NTP|A Chain A, Human Pin1 Complexed With Reduced Amide Inhibitor
Length = 167
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 26/42 (61%)
Query: 196 LDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
+ D EKL PGW +A +SG YY+N T SQWERP SS
Sbjct: 5 MADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSS 46
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 251 WIEAVDETSGHKYYYNKRTHVSQWVHP 277
W +A+ +SG YY+N T+ SQW P
Sbjct: 15 WEKAMSRSSGRVYYFNHITNASQWERP 41
>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
Length = 167
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 26/42 (61%)
Query: 196 LDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
+ D EKL PGW +A +SG YY+N T SQWERP SS
Sbjct: 5 MADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSS 46
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 251 WIEAVDETSGHKYYYNKRTHVSQWVHP 277
W +A+ +SG YY+N T+ SQW P
Sbjct: 15 WEKAMSRSSGRVYYFNHITNASQWERP 41
>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
pdb|3OOB|A Chain A, Structural And Functional Insights Of Directly Targeting
Pin1 By Epigallocatechin-3-Gallate
Length = 163
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 26/42 (61%)
Query: 196 LDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
+ D EKL PGW +A +SG YY+N T SQWERP SS
Sbjct: 1 MADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSS 42
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 251 WIEAVDETSGHKYYYNKRTHVSQWVHP 277
W +A+ +SG YY+N T+ SQW P
Sbjct: 11 WEKAMSRSSGRVYYFNHITNASQWERP 37
>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition
By Group Iv Ww Domains
Length = 167
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 196 LDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
+ D EKL PGW + +SG YY+N T SQWERP SS
Sbjct: 5 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSS 46
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 251 WIEAVDETSGHKYYYNKRTHVSQWVHP 277
W + + +SG YY+N T+ SQW P
Sbjct: 15 WEKRMSRSSGRVYYFNHITNASQWERP 41
>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 196 LDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
+ D EKL PGW + +SG YY+N T SQWERP SS
Sbjct: 1 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSS 42
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 251 WIEAVDETSGHKYYYNKRTHVSQWVHP 277
W + + +SG YY+N T+ SQW P
Sbjct: 11 WEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 196 LDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
+ D EKL PGW + +SG YY+N T SQWERP SS
Sbjct: 1 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSS 42
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 251 WIEAVDETSGHKYYYNKRTHVSQWVHP 277
W + + +SG YY+N T+ SQW P
Sbjct: 11 WEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens
pdb|1NMV|A Chain A, Solution Structure Of Human Pin1
Length = 163
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 196 LDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
+ D EKL PGW + +SG YY+N T SQWERP SS
Sbjct: 1 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSS 42
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 251 WIEAVDETSGHKYYYNKRTHVSQWVHP 277
W + + +SG YY+N T+ SQW P
Sbjct: 11 WEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 196 LDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
+ D EKL PGW + +SG YY+N T SQWERP SS
Sbjct: 1 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSS 42
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 251 WIEAVDETSGHKYYYNKRTHVSQWVHP 277
W + + +SG YY+N T+ SQW P
Sbjct: 11 WEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|2L5F|A Chain A, Solution Structure Of The Tandem Ww Domains From HypaFBP11
Length = 92
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 206 WVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTPSHLSLMEDWIEAVDETSGHKYYY 265
W E K P G +YYYN T +S WE+P + +TP+ L + + SG YYY
Sbjct: 16 WTEHKSP-DGRTYYYNTETKQSTWEKPDD----LKTPAEQLLSKCPWKEYKSDSGKTYYY 70
Query: 266 NKRTHVSQWVHP 277
N +T S+W P
Sbjct: 71 NSQTKESRWAKP 82
>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 196 LDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
+ D EKL PGW + +SG YY+N T +QWERP SS
Sbjct: 1 MADEEKLPPGWEKRMSRSSGRVYYFNHITNAAQWERPSGNSS 42
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 251 WIEAVDETSGHKYYYNKRTHVSQWVHP 277
W + + +SG YY+N T+ +QW P
Sbjct: 11 WEKRMSRSSGRVYYFNHITNAAQWERP 37
>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
Length = 162
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 196 LDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
+ D EKL PGW E + A G YY+N T SQWERP SS
Sbjct: 1 MADEEKLPPGW-EKRMSADGRVYYFNHITNASQWERPSGNSS 41
>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor
pdb|3TDB|A Chain A, Human Pin1 Bound To Trans Peptidomimetic Inhibitor
Length = 158
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 23/37 (62%)
Query: 201 KLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
KL PGW +A +SG YY+N T SQWERP SS
Sbjct: 1 KLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSS 37
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 251 WIEAVDETSGHKYYYNKRTHVSQWVHP 277
W +A+ +SG YY+N T+ SQW P
Sbjct: 6 WEKAMSRSSGRVYYFNHITNASQWERP 32
>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 24/42 (57%)
Query: 196 LDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
+ D EKL PGW + +SG YY N T SQWERP SS
Sbjct: 1 MADEEKLPPGWEKRMSRSSGRVYYANHITNASQWERPSGNSS 42
>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant
Length = 161
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 196 LDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
+ D EKL PGW K ++G YY+N T SQWERP SS
Sbjct: 1 MADEEKLPPGW--EKRMSNGRVYYFNHITNASQWERPSGNSS 40
>pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 196 LDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
+ D EKL PGW + +SG YY+N T SQ ERP SS
Sbjct: 1 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQAERPSGNSS 42
>pdb|2JXW|A Chain A, Solution Structure Of The Tandem Ww Domains Of Fbp21
Length = 75
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 206 WVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTPSHLSLMEDWIEAVDETSGHKYYY 265
WVE + G YYY+ +G SQWE+P + + ++ W+E + E G YYY
Sbjct: 7 WVEGI-TSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTV---WVEGLSE-DGFTYYY 61
Query: 266 NKRTHVSQWVHP 277
N T S+W P
Sbjct: 62 NTETGESRWEKP 73
>pdb|1I6C|A Chain A, Solution Structure Of Pin1 Ww Domain
pdb|1I8G|B Chain B, Solution Structure Of Pin1 Ww Domain Complexed With Cdc25
Phosphothreonine Peptide
pdb|1I8H|B Chain B, Solution Structure Of Pin1 Ww Domain Complexed With Human
Tau Phosphothreonine Peptide
Length = 39
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%)
Query: 201 KLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237
KL PGW + +SG YY+N T SQWERP SS
Sbjct: 1 KLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSS 37
>pdb|2LB3|A Chain A, Structure Of The Ww Domain Of Pin1 In Complex With A Human
Phosphorylated Smad3 Derived Peptide
Length = 36
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 201 KLLPGWVEAKDPASGASYYYNESTGKSQWERP 232
KL PGW + +SG YY+N T SQWERP
Sbjct: 1 KLPPGWEKRMSRSSGRVYYFNHITNASQWERP 32
>pdb|2KCF|A Chain A, The Nmr Solution Structure Of The Isolated Apo Pin1 Ww
Domain
Length = 36
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 201 KLLPGWVEAKDPASGASYYYNESTGKSQWERP 232
KL PGW + +SG YY+N T SQWERP
Sbjct: 3 KLPPGWEKRMSRSSGRVYYFNHITNASQWERP 34
>pdb|1YWI|A Chain A, Structure Of The Fbp11ww1 Domain Complexed To The Peptide
Apptppplpp
pdb|1YWJ|A Chain A, Structure Of The Fbp11ww1 Domain
Length = 41
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 206 WVEAKDPASGASYYYNESTGKSQWERP 232
W E K P G +YYYN T +S WE+P
Sbjct: 14 WTEHKSP-DGRTYYYNTETKQSTWEKP 39
>pdb|1ZR7|A Chain A, Solution Structure Of The First Ww Domain Of Fbp11
pdb|2DYF|A Chain A, Solution Structure Of The First Ww Domain Of Fbp11 HYPA
(Fbp11 Ww1) Complexed With A Pl (Pplp) Motif Peptide
Ligand
Length = 30
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 206 WVEAKDPASGASYYYNESTGKSQWERP 232
W E K P G +YYYN T +S WE+P
Sbjct: 3 WTEHKSP-DGRTYYYNTETKQSTWEKP 28
>pdb|1E0L|A Chain A, Fbp28ww Domain From Mus Musculus
pdb|2JUP|W Chain W, Fbp28ww2 Domain In Complex With The Pplipppp Peptide
pdb|2RLY|W Chain W, Fbp28ww2 Domain In Complex With Ptppplpp Peptide
pdb|2RM0|W Chain W, Fbp28ww2 Domain In Complex With A Ppplipppp Peptide
Length = 37
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 206 WVEAKDPASGASYYYNESTGKSQWERPVE 234
W E K A G +YYYN T +S WE+P E
Sbjct: 8 WTEYK-TADGKTYYYNNRTLESTWEKPQE 35
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 38 EQEIETQKIIQGQREEGVVGASHHDGADIFAKRSDPNALKEHLLKMTSEHRAEM 91
+ +E K GQ E +GASH D P+A+ EHLL + HR +
Sbjct: 253 QHPLEIWKTWAGQVEGAAIGASHMLPEDA------PDAVLEHLLGFLASHREAL 300
>pdb|2YSE|A Chain A, Solution Structure Of The Second Ww Domain From The Human
Membrane-Associated Guanylate Kinase, Ww And Pdz Domain-
Containing Protein 1. Magi-1
Length = 60
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 196 LDDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQ 240
LD +L GW + +DP G YY + K+Q+E PV + R +
Sbjct: 8 LDSELELPAGWEKIEDPVYGI-YYVDHINRKTQYENPVLEAKRKK 51
>pdb|1YMZ|A Chain A, Cc45, An Artificial Ww Domain Designed Using Statistical
Coupling Analysis
Length = 43
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 202 LLPGWVEAKDPASGASYYYNESTGKSQWERP 232
L PGW E + G YY+N T + WERP
Sbjct: 9 LPPGW-ERRTDVEGKVYYFNVRTLTTTWERP 38
>pdb|1E0M|A Chain A, Prototype Ww Domain
Length = 37
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 202 LLPGWVEAKDPASGASYYYNESTGKSQWERPVETS 236
L PGW E K +G +YYYN +T S W P +S
Sbjct: 4 LPPGWDEYKT-HNGKTYYYNHNTKTSTWTDPRMSS 37
>pdb|2NNT|A Chain A, General Structural Motifs Of Amyloid Protofilaments
pdb|2NNT|B Chain B, General Structural Motifs Of Amyloid Protofilaments
pdb|2NNT|C Chain C, General Structural Motifs Of Amyloid Protofilaments
pdb|2NNT|D Chain D, General Structural Motifs Of Amyloid Protofilaments
Length = 40
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 206 WVEAKDPASGASYYYNESTGKSQWERPVE 234
W E K A G ++YYN T +S WE+P E
Sbjct: 11 WTEYK-TADGKTFYYNNRTLESTWEKPQE 38
>pdb|2X8N|A Chain A, Solution Nmr Structure Of Uncharacterized Protein Cv0863
From Chromobacterium Violaceum. Northeast Structural
Genomics Target (Nesg) Target Cvt3. Ocsp Target Cv0863
Length = 111
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 19 GTNASANDIEAAAREAVLREQEIETQKIIQGQREEGVV 56
G SAN++EAA+ + ++E T + +Q + EEGV+
Sbjct: 2 GMEVSANELEAASSRMEMLQREYSTLRSVQYRSEEGVI 39
>pdb|2LB2|A Chain A, Structure Of The Second Domain Of Human Nedd4l In Complex
With A Phosphorylated Ptpy Motif Derived From Human
Smad3
Length = 35
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 203 LP-GWVEAKDPASGASYYYNESTGKSQWERPV 233
LP GW E KD A G +YY N + + W RP+
Sbjct: 2 LPSGWEERKD-AKGRTYYVNHNNRTTTWTRPI 32
>pdb|2YSC|A Chain A, Solution Structure Of The Ww Domain From The Human Amyloid
Beta A4 Precursor Protein-Binding Family B Member 3,
Apbb3
Length = 39
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 202 LLPGWVEAKDPASGASYYYNESTGKSQWERP 232
L PGW + D A +YY++ +G +QW+RP
Sbjct: 9 LPPGWRKIHDAA--GTYYWHVPSGSTQWQRP 37
>pdb|1WR4|A Chain A, Solution Structure Of The Second Ww Domain Of Nedd4-2
Length = 36
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 202 LLPGWVEAKDPASGASYYYNESTGKSQWERPV 233
L GW E KD A G +YY N + + W RP+
Sbjct: 5 LPSGWEERKD-AKGRTYYVNHNNRTTTWTRPI 35
>pdb|2LTY|A Chain A, Nedd4l Ww2 Domain In Complex With A Smad7 Derived Peptide
Length = 34
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 202 LLPGWVEAKDPASGASYYYNESTGKSQWERPV 233
L GW E KD A G +YY N + + W RP+
Sbjct: 3 LPSGWEERKD-AKGRTYYVNHNNRTTTWTRPI 33
>pdb|2YSI|A Chain A, Solution Structure Of The First Ww Domain From The Mouse
Transcription Elongation Regulator 1, Transcription
Factor Ca150
Length = 40
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 206 WVEAKDPASGASYYYNESTGKSQWERP 232
WVE K P G YYYN T +S W +P
Sbjct: 12 WVENKTP-DGKVYYYNARTRESAWTKP 37
>pdb|1WR3|A Chain A, Solution Structure Of The First Ww Domain Of Nedd4-2
Length = 36
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 202 LLPGWVEAKDPASGASYYYNESTGKSQWERP 232
L PGW E D G +YY N + +QW RP
Sbjct: 5 LPPGWEEKVD-NLGRTYYVNHNNRSTQWHRP 34
>pdb|2KBU|A Chain A, Nmr Solution Structure Of Pin1 Ww Domain Mutant With Beta
Turn Mimic At Position 12
Length = 31
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 201 KLLPGWVEAKDPASGASYYYNESTGKSQWERP 232
KL PGW + S YY+N T SQ+ERP
Sbjct: 1 KLPPGW---EKRMSXRVYYFNHITNASQFERP 29
>pdb|1I5H|W Chain W, Solution Structure Of The Rnedd4 Wwiii Domain-Renac Bp2
Peptide Complex
Length = 50
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 197 DDREKLLPGWVEAKDPASGASYYYNESTGKSQWERP 232
+D L PGW E + G ++ N + K+QWE P
Sbjct: 7 NDLGPLPPGW-EERTHTDGRVFFINHNIKKTQWEDP 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.127 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,144,621
Number of Sequences: 62578
Number of extensions: 716142
Number of successful extensions: 1408
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1332
Number of HSP's gapped (non-prelim): 89
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (25.0 bits)