Query 046743
Match_columns 478
No_of_seqs 308 out of 1221
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 04:04:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3427 Polyglutamine tract-bi 99.9 1.1E-25 2.4E-30 213.5 5.9 80 371-455 137-221 (222)
2 PF00397 WW: WW domain; Inter 99.0 5.5E-10 1.2E-14 77.6 3.6 31 202-232 1-31 (31)
3 PF00397 WW: WW domain; Inter 98.9 2.6E-09 5.5E-14 74.2 4.6 31 247-277 1-31 (31)
4 COG5104 PRP40 Splicing factor 98.8 3.7E-10 8E-15 118.4 -0.8 76 203-283 14-89 (590)
5 KOG1891 Proline binding protei 98.8 7.9E-09 1.7E-13 101.1 5.2 72 199-281 91-162 (271)
6 smart00456 WW Domain with 2 co 98.7 2.1E-08 4.7E-13 68.9 4.3 31 202-233 1-31 (32)
7 smart00456 WW Domain with 2 co 98.6 3.7E-08 8E-13 67.7 4.2 31 247-278 1-31 (32)
8 cd00201 WW Two conserved trypt 98.5 1.3E-07 2.9E-12 64.1 4.2 30 203-233 1-30 (31)
9 cd00201 WW Two conserved trypt 98.5 1.6E-07 3.5E-12 63.6 4.0 30 248-278 1-30 (31)
10 KOG3259 Peptidyl-prolyl cis-tr 98.3 3E-07 6.5E-12 85.2 2.3 39 198-236 3-41 (163)
11 KOG3209 WW domain-containing p 98.2 3.9E-06 8.5E-11 92.8 9.6 241 47-346 40-304 (984)
12 KOG0155 Transcription factor C 98.2 1.5E-06 3.4E-11 93.1 6.3 76 203-280 11-144 (617)
13 KOG3427 Polyglutamine tract-bi 98.1 7.9E-07 1.7E-11 85.9 1.1 155 246-432 7-168 (222)
14 KOG3259 Peptidyl-prolyl cis-tr 98.1 1.5E-06 3.2E-11 80.7 1.6 36 245-280 5-40 (163)
15 KOG1891 Proline binding protei 97.9 7.8E-06 1.7E-10 80.5 4.5 63 245-338 92-156 (271)
16 KOG3209 WW domain-containing p 97.5 8.6E-05 1.9E-09 82.6 4.4 81 197-279 218-300 (984)
17 COG5104 PRP40 Splicing factor 97.1 0.00011 2.4E-09 78.1 -0.2 68 245-337 11-80 (590)
18 KOG0940 Ubiquitin protein liga 96.9 0.0013 2.9E-08 68.7 5.3 131 198-333 57-207 (358)
19 KOG0155 Transcription factor C 94.3 0.13 2.7E-06 56.6 7.5 36 201-237 110-146 (617)
20 KOG0152 Spliceosomal protein F 91.1 0.026 5.6E-07 61.1 -2.9 306 20-334 85-425 (463)
21 KOG4334 Uncharacterized conser 83.2 1 2.2E-05 49.6 3.3 38 197-235 150-187 (650)
22 KOG1450 Predicted Rho GTPase-a 82.8 1.7 3.8E-05 49.1 5.0 77 204-280 271-358 (650)
23 KOG0940 Ubiquitin protein liga 76.3 1.5 3.2E-05 46.4 1.9 36 198-235 111-146 (358)
24 KOG4334 Uncharacterized conser 69.0 4.9 0.00011 44.5 3.7 37 243-280 151-187 (650)
25 COG5021 HUL4 Ubiquitin-protein 68.0 0.68 1.5E-05 53.9 -3.1 137 197-342 294-478 (872)
26 KOG0150 Spliceosomal protein F 67.0 3.6 7.7E-05 43.1 2.1 54 225-282 130-183 (336)
27 KOG4286 Dystrophin-like protei 55.3 3.4 7.4E-05 47.6 -0.5 32 247-279 350-381 (966)
28 KOG4286 Dystrophin-like protei 55.1 3.9 8.5E-05 47.2 -0.0 30 204-234 352-381 (966)
29 KOG0150 Spliceosomal protein F 50.7 8.5 0.00019 40.4 1.6 33 203-236 150-182 (336)
30 KOG3552 FERM domain protein FR 43.5 7.4 0.00016 46.1 -0.2 52 224-281 2-53 (1298)
31 KOG3552 FERM domain protein FR 36.6 9.1 0.0002 45.4 -0.8 37 198-235 16-52 (1298)
32 COG5021 HUL4 Ubiquitin-protein 31.3 8.5 0.00018 45.2 -2.2 77 200-278 386-477 (872)
33 cd01396 MeCP2_MBD MeCP2, MBD1, 31.0 52 0.0011 27.6 3.0 25 200-224 5-35 (77)
34 PF09003 Phage_integ_N: Bacter 28.3 35 0.00076 29.0 1.5 30 200-229 10-41 (75)
35 PRK11138 outer membrane biogen 28.2 1.1E+02 0.0024 31.5 5.5 68 206-279 122-189 (394)
36 cd00122 MBD MeCP2, MBD1, MBD2, 27.6 67 0.0015 25.5 3.0 25 200-224 4-34 (62)
37 PF01429 MBD: Methyl-CpG bindi 25.5 67 0.0014 26.6 2.7 32 198-230 7-45 (77)
38 PLN00180 NDF6 (NDH-dependent f 23.0 64 0.0014 31.2 2.4 22 22-43 142-163 (180)
39 PRK11138 outer membrane biogen 22.9 1.5E+02 0.0034 30.5 5.4 67 210-278 166-233 (394)
40 TIGR03300 assembly_YfgL outer 22.9 1.7E+02 0.0036 29.7 5.6 71 205-277 146-217 (377)
41 smart00391 MBD Methyl-CpG bind 22.4 80 0.0017 26.5 2.6 23 200-222 6-35 (77)
42 COG3076 Uncharacterized protei 21.7 64 0.0014 29.8 2.0 50 35-100 3-58 (135)
43 PF13360 PQQ_2: PQQ-like domai 21.3 1.3E+02 0.0028 27.8 4.0 71 208-279 80-151 (238)
44 TIGR03300 assembly_YfgL outer 21.2 1.8E+02 0.0038 29.6 5.3 68 206-279 107-174 (377)
No 1
>KOG3427 consensus Polyglutamine tract-binding protein PQBP-1 [Transcription]
Probab=99.92 E-value=1.1e-25 Score=213.48 Aligned_cols=80 Identities=44% Similarity=0.644 Sum_probs=66.4
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCcccCcc-----cCCCCccccCCCCCCccCCCCCCChHHHh
Q 046743 371 SWKPPMGRGNRKDSRKRAFSEDDELDPMDPSSYSDAPRGGWVVGLK-----GVQPRAADTTATGPLFQQRPYPSPGAVLR 445 (478)
Q Consensus 371 ~~~~p~~k~~~~~~~~r~~~~~~~~dpmdp~~y~d~p~g~w~~gl~-----~~~~~~~d~ta~g~l~q~rpyp~pg~~l~ 445 (478)
.+-.++.+.++-.. .+...+|||||++|++||+|.|++||. .+..||+|+||+||||||||||+||||||
T Consensus 137 ~e~~~y~r~k~avs-----~kg~~~~~ad~tas~~afr~~~stgl~~~~~r~e~vt~ad~ta~gPlfqqrpyPapgavlR 211 (222)
T KOG3427|consen 137 KEFYFYPRTKQAVS-----RKGPSHDPADPTASAGAFRGQWSTGLDEFNFRTEMVTGADSTANGPLFQQRPYPAPGAVLR 211 (222)
T ss_pred hhhccCCcccceec-----ccCCCCCCCCccccccchhhhhccCCcccccccccccccccccCCCccccCcCCCchhHHh
Confidence 45555555532222 257889999999999999999999995 36688999999999999999999999999
Q ss_pred hhHHHHhhcC
Q 046743 446 KNAEIASQSK 455 (478)
Q Consensus 446 ~~~~~~~~~~ 455 (478)
+|++.++.++
T Consensus 212 ~nae~~~~~~ 221 (222)
T KOG3427|consen 212 DNAEKIQRRR 221 (222)
T ss_pred hhhHhhhhhc
Confidence 9999986654
No 2
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.96 E-value=5.5e-10 Score=77.57 Aligned_cols=31 Identities=68% Similarity=1.289 Sum_probs=29.3
Q ss_pred CCCCcEEEEcCCCCceeeeeCCCCCeeccCC
Q 046743 202 LLPGWVEAKDPASGASYYYNESTGKSQWERP 232 (478)
Q Consensus 202 LPpGWEe~~Dp~SGR~YYyN~~TgeTTWErP 232 (478)
||++|++++|+++|++||||+.|++|+|++|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 8999999998657999999999999999998
No 3
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.88 E-value=2.6e-09 Score=74.23 Aligned_cols=31 Identities=48% Similarity=0.860 Sum_probs=28.9
Q ss_pred CCCCcEEEEecCCCcEEEEeCCCCeeeccCC
Q 046743 247 LMEDWIEAVDETSGHKYYYNKRTHVSQWVHP 277 (478)
Q Consensus 247 LP~GWEE~~DpssGR~YYyN~~TgeTqWEdP 277 (478)
||.+|++++|+.+|++||||+.|++|+|++|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 6899999998657999999999999999998
No 4
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=98.85 E-value=3.7e-10 Score=118.43 Aligned_cols=76 Identities=39% Similarity=0.716 Sum_probs=61.7
Q ss_pred CCCcEEEEcCCCCceeeeeCCCCCeeccCCCcccccCCCCCCcCCCCCcEEEEecCCCcEEEEeCCCCeeeccCCCCCCC
Q 046743 203 LPGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTPSHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGSSKP 282 (478)
Q Consensus 203 PpGWEe~~Dp~SGR~YYyN~~TgeTTWErP~~~~~~~~~pa~~~LP~GWEE~~DpssGR~YYyN~~TgeTqWEdPr~~~p 282 (478)
-..|++..+++ ||+||||..|++++|++|.+..... .......+|.++.. .+|++||||..|++|.|..|.....
T Consensus 14 ~s~w~e~k~~d-gRiYYYN~~T~kS~weKPkell~~~---e~~l~~~~Wke~~T-adGkvyyyN~~TREs~W~iP~e~Kk 88 (590)
T COG5104 14 RSEWEELKAPD-GRIYYYNKRTGKSSWEKPKELLKGS---EEDLDVDPWKECRT-ADGKVYYYNSITRESRWKIPPERKK 88 (590)
T ss_pred HHHHHHhhCCC-CceEEEecccccccccChHHHhcch---HhhhchhhHHHHhh-cCCceEEecCccccccccCChhhhc
Confidence 45799999997 9999999999999999997653221 11234678998875 4999999999999999999987654
Q ss_pred C
Q 046743 283 V 283 (478)
Q Consensus 283 v 283 (478)
|
T Consensus 89 V 89 (590)
T COG5104 89 V 89 (590)
T ss_pred c
Confidence 3
No 5
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=98.76 E-value=7.9e-09 Score=101.05 Aligned_cols=72 Identities=28% Similarity=0.624 Sum_probs=64.1
Q ss_pred CCCCCCCcEEEEcCCCCceeeeeCCCCCeeccCCCcccccCCCCCCcCCCCCcEEEEecCCCcEEEEeCCCCeeeccCCC
Q 046743 199 REKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTPSHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHPG 278 (478)
Q Consensus 199 ~e~LPpGWEe~~Dp~SGR~YYyN~~TgeTTWErP~~~~~~~~~pa~~~LP~GWEE~~DpssGR~YYyN~~TgeTqWEdPr 278 (478)
.-+||+||..-++-. ||+||+||++++|-|..|.+- ..||+||+.++++..| +||||+.++.||.+.|.
T Consensus 91 dlPLPpgWav~~T~~-grkYYIDHn~~tTHW~HPler---------EgLppGW~rv~s~e~G-tyY~~~~~k~tQy~HPc 159 (271)
T KOG1891|consen 91 DLPLPPGWAVEFTTE-GRKYYIDHNNRTTHWVHPLER---------EGLPPGWKRVFSPEKG-TYYYHEEMKRTQYEHPC 159 (271)
T ss_pred cCCCCCCcceeeEec-CceeEeecCCCcccccChhhh---------ccCCcchhhccccccc-eeeeecccchhhhcCCC
Confidence 458999999999987 999999999999999999764 3689999999998554 89999999999999998
Q ss_pred CCC
Q 046743 279 SSK 281 (478)
Q Consensus 279 ~~~ 281 (478)
...
T Consensus 160 ~~s 162 (271)
T KOG1891|consen 160 ISS 162 (271)
T ss_pred CCC
Confidence 753
No 6
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.69 E-value=2.1e-08 Score=68.89 Aligned_cols=31 Identities=58% Similarity=1.219 Sum_probs=29.8
Q ss_pred CCCCcEEEEcCCCCceeeeeCCCCCeeccCCC
Q 046743 202 LLPGWVEAKDPASGASYYYNESTGKSQWERPV 233 (478)
Q Consensus 202 LPpGWEe~~Dp~SGR~YYyN~~TgeTTWErP~ 233 (478)
||.+|++.+|+. |+.||||+.|++++|++|.
T Consensus 1 lp~gW~~~~~~~-g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 1 LPPGWEERKDPD-GRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCCEEEECCC-CCEEEEECCCCCEEcCCCC
Confidence 799999999998 9999999999999999996
No 7
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.64 E-value=3.7e-08 Score=67.72 Aligned_cols=31 Identities=42% Similarity=0.843 Sum_probs=29.1
Q ss_pred CCCCcEEEEecCCCcEEEEeCCCCeeeccCCC
Q 046743 247 LMEDWIEAVDETSGHKYYYNKRTHVSQWVHPG 278 (478)
Q Consensus 247 LP~GWEE~~DpssGR~YYyN~~TgeTqWEdPr 278 (478)
||.+|++.+|. +|++||||+.|++++|++|+
T Consensus 1 lp~gW~~~~~~-~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 1 LPPGWEERKDP-DGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCCEEEECC-CCCEEEEECCCCCEEcCCCC
Confidence 58999999998 49999999999999999996
No 8
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.51 E-value=1.3e-07 Score=64.06 Aligned_cols=30 Identities=53% Similarity=1.100 Sum_probs=28.7
Q ss_pred CCCcEEEEcCCCCceeeeeCCCCCeeccCCC
Q 046743 203 LPGWVEAKDPASGASYYYNESTGKSQWERPV 233 (478)
Q Consensus 203 PpGWEe~~Dp~SGR~YYyN~~TgeTTWErP~ 233 (478)
|.+|++.+|.. |++||||+.|++++|++|.
T Consensus 1 p~~W~~~~~~~-g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDPD-GRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECCC-CCEEEEECCCCCEeCCCCC
Confidence 68999999998 9999999999999999996
No 9
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.49 E-value=1.6e-07 Score=63.65 Aligned_cols=30 Identities=40% Similarity=0.801 Sum_probs=28.1
Q ss_pred CCCcEEEEecCCCcEEEEeCCCCeeeccCCC
Q 046743 248 MEDWIEAVDETSGHKYYYNKRTHVSQWVHPG 278 (478)
Q Consensus 248 P~GWEE~~DpssGR~YYyN~~TgeTqWEdPr 278 (478)
|.+|++.+|. +|++||||+.|++|+|++|+
T Consensus 1 p~~W~~~~~~-~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDP-DGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECC-CCCEEEEECCCCCEeCCCCC
Confidence 5799999998 59999999999999999996
No 10
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=3e-07 Score=85.21 Aligned_cols=39 Identities=54% Similarity=0.984 Sum_probs=35.9
Q ss_pred CCCCCCCCcEEEEcCCCCceeeeeCCCCCeeccCCCccc
Q 046743 198 DREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETS 236 (478)
Q Consensus 198 ~~e~LPpGWEe~~Dp~SGR~YYyN~~TgeTTWErP~~~~ 236 (478)
+.+.||++|+++++..+|++||||+.|++++|++|....
T Consensus 3 ~~~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t~ 41 (163)
T KOG3259|consen 3 DEEKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGTS 41 (163)
T ss_pred ccccCCchhheeccccCCCcceeccccchhhccCCCccc
Confidence 456899999999999999999999999999999998764
No 11
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=98.24 E-value=3.9e-06 Score=92.84 Aligned_cols=241 Identities=17% Similarity=0.117 Sum_probs=138.3
Q ss_pred HhhhhhccccCC--CCCCCccccccCCChhhHHHHHHhhchhHHHHHHHhcCCCCCCCCCceeecccccCCCc--ccccc
Q 046743 47 IQGQREEGVVGA--SHHDGADIFAKRSDPNALKEHLLKMTSEHRAEMALKRGKPTGPNQGNTEIGNGYGVPGG--VAYYN 122 (478)
Q Consensus 47 i~~qr~~~~~~~--~~~~~~d~~~~r~d~~alke~llk~t~~hr~e~a~krg~~~~~~~g~~~igngygvpgg--~ay~~ 122 (478)
..++|..+.+.+ +...-+|-|.-+.-|-.+.-||.---. .---++-+.-=++|.++-|+-+|+ +-|||
T Consensus 40 f~~~~f~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~--------d~~fs~~~~~l~l~~~~~~l~~~~~~~~~yg 111 (984)
T KOG3209|consen 40 FLNTRFQKGFVDHELQQSIRDNLYLFQVPCTTRRILEGEVP--------DYSFSTVPIFLCLEVSGCLLEFGTYESNYYG 111 (984)
T ss_pred hhhhhhhhccchhhhcccccccccccccccccccccccccC--------ccccccchhhheeeecceeecccCcccCCCC
Confidence 344555554433 444444444444444444444332111 111223334456788888888876 56888
Q ss_pred ccccchhcccCCCCCCCCcCccccCCccccCCCCCCCCHHHHHhHhhccccccCCCCCCCCcccccccCCCcccCCCCCC
Q 046743 123 VQSTAITRTQGAGNDGMGQRNLKLDSESEQKPVTKELPEYLKQRLRARGILKDTSENGDPPRINNKLESTSAQLDDREKL 202 (478)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~LPp~L~qRL~~RGIl~~~~~~s~p~~ia~n~~~~s~~~~~~e~L 202 (478)
.+.-|- --.++-|+. .-+.-.||+.|++--.+|+-.+...++.. ..+++.++.+
T Consensus 112 tPkPp~-------~pa~~~~~~--------~d~~~~~~~~~~es~~kr~~sy~~m~n~g-----------~~~~eeeee~ 165 (984)
T KOG3209|consen 112 TPKPPE-------CPADDDMML--------TDQELLLPPNSAESYRKRTKSYSIMENAG-----------ITTPEEEEEE 165 (984)
T ss_pred CCCCcc-------ccCccccee--------ecccccCCCcchhcccccCcceeehhccC-----------CCCccccccc
Confidence 877110 001122222 23556789999999999988766665542 2345667778
Q ss_pred CCCcEEEEcCCCCceeeeeCCC---CCeeccCCCcccccCC---------------CCCCcCCCCCcEEEEecCCCcEEE
Q 046743 203 LPGWVEAKDPASGASYYYNEST---GKSQWERPVETSSRAQ---------------TPSHLSLMEDWIEAVDETSGHKYY 264 (478)
Q Consensus 203 PpGWEe~~Dp~SGR~YYyN~~T---geTTWErP~~~~~~~~---------------~pa~~~LP~GWEE~~DpssGR~YY 264 (478)
+++|+.. +|+.||.-+.. .++.|-. ....++.. ..-.++||..|+..+.+ +|.+||
T Consensus 166 d~g~~n~----~~~~~~~E~~e~s~~~s~~m~-ssy~aPsts~s~~~~~~~~~~~~e~~~gplp~nwemayte-~gevyf 239 (984)
T KOG3209|consen 166 DPGWENG----SGQNYSVEMEESSYPTSSDMP-SSYFAPSTSQSTTPMDRYSPATQEDNLGPLPHNWEMAYTE-QGEVYF 239 (984)
T ss_pred Ccccccc----CCcccchhhhhccCCccCCCc-ccccccccCCCCCcccccCccccccccCCCCccceEeEee-cCeeEe
Confidence 8899754 36667655332 2333422 21111110 01246799999999976 999999
Q ss_pred EeCCCCeeeccCCCCCCCCCCcCCCCccCcCCCCCCCCCCCCCCccccCCCCCccCcc--cceeEeeccceeeccccchh
Q 046743 265 YNKRTHVSQWVHPGSSKPVASEQSDSNASRNTTNGIWDNPSSGLERCLHCGGWGVGLV--QTWGYCNHCTRVLNLPQCQY 342 (478)
Q Consensus 265 yN~~TgeTqWEdPr~~~pv~S~~aa~~~~~~~~~Gs~~~pgs~~~~~plPpGWeVg~d--Gr~~Y~nH~Tr~q~lp~~~~ 342 (478)
++|+|++|+|-+|++.. +++.++. -+ -..+|-||+-..+ =.++|.+|+.+-.-+.-..+
T Consensus 240 iDhntkttswLdprl~k------kaK~~ee-ck------------d~elPygWeki~dpiYg~yyvdHiN~~sq~enpvl 300 (984)
T KOG3209|consen 240 IDHNTKTTSWLDPRLTK------KAKPPEE-CK------------DQELPYGWEKIEDPIYGTYYVDHINRKSQYENPVL 300 (984)
T ss_pred eecccccceecChhhhc------ccCChhh-cc------------cccccccccccCCccceeEEecccchhhhhccchh
Confidence 99999999999999632 2222100 01 1138899995544 67899999877744444444
Q ss_pred hccc
Q 046743 343 LLTS 346 (478)
Q Consensus 343 ~~~~ 346 (478)
-...
T Consensus 301 eakr 304 (984)
T KOG3209|consen 301 EAKR 304 (984)
T ss_pred hccc
Confidence 3333
No 12
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=98.23 E-value=1.5e-06 Score=93.13 Aligned_cols=76 Identities=30% Similarity=0.596 Sum_probs=60.3
Q ss_pred CCCcEEEEcCCCCceeeeeCCCCCeeccCCCccccc-----------CC--------------C----------------
Q 046743 203 LPGWVEAKDPASGASYYYNESTGKSQWERPVETSSR-----------AQ--------------T---------------- 241 (478)
Q Consensus 203 PpGWEe~~Dp~SGR~YYyN~~TgeTTWErP~~~~~~-----------~~--------------~---------------- 241 (478)
|++|.++..|. |.+||||..|.+.||++|...... .+ .
T Consensus 11 ps~wtef~ap~-G~pyy~ns~t~~st~ekP~~l~~~~s~~~~~~~p~~sp~~~~~~~~t~~~~~~e~~~~k~~~s~~~~e 89 (617)
T KOG0155|consen 11 PSGWTEFKAPD-GIPYYWNSETLESTWEKPSFLEKNESSGVTASEPSLSPAIAEAQQKTSSNAFGENPSEKLFVSENAAE 89 (617)
T ss_pred CCCCccCCCCC-CcceecccccccchhhCchhhhhccccCccccCCccCcchhhhhhhhhhccCCcchHHHHHhCcchhh
Confidence 48999999997 999999999999999999765210 00 0
Q ss_pred ------------C-----CCcCCCCCcEEEEecCCCcEEEEeCCCCeeeccCCCCC
Q 046743 242 ------------P-----SHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGSS 280 (478)
Q Consensus 242 ------------p-----a~~~LP~GWEE~~DpssGR~YYyN~~TgeTqWEdPr~~ 280 (478)
+ .....+..|..++. .++|+||||..|+.+.|+.|.+.
T Consensus 90 e~~~~~~~~kk~p~rPi~~~~ipgtdWcVVwT-gD~RvFFyNpktk~S~We~P~dl 144 (617)
T KOG0155|consen 90 ERKNSRAARKKLPDRPIFKKPIPGTDWCVVWT-GDNRVFFYNPKTKLSVWERPLDL 144 (617)
T ss_pred cCCCcccccccCCCCCCCCCCCCCCCeEEEEe-CCCceEEeCCccccccccCchhh
Confidence 0 01234567999995 49999999999999999999875
No 13
>KOG3427 consensus Polyglutamine tract-binding protein PQBP-1 [Transcription]
Probab=98.12 E-value=7.9e-07 Score=85.87 Aligned_cols=155 Identities=20% Similarity=0.226 Sum_probs=88.3
Q ss_pred CCCCCcEEEEecCCCcEEEEeCCCCeeeccCCCCCCCCCCcCCCCc--cCcCCCCCCCCCCCCCCccccCCCCCccCccc
Q 046743 246 SLMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGSSKPVASEQSDSN--ASRNTTNGIWDNPSSGLERCLHCGGWGVGLVQ 323 (478)
Q Consensus 246 ~LP~GWEE~~DpssGR~YYyN~~TgeTqWEdPr~~~pv~S~~aa~~--~~~~~~~Gs~~~pgs~~~~~plPpGWeVg~dG 323 (478)
-||.-|.+++|++-|..||+|..|-...|..|....++.+..+.-. .+..+.
T Consensus 7 rlp~~w~kv~~~s~~~~y~wn~~td~v~w~sp~~P~~~~~d~apr~~r~~aeek-------------------------- 60 (222)
T KOG3427|consen 7 RLPKLWTKVFDASPGSEYIWNIITDNVDWDSPSGPYPYKEDTAPRPKRRSAEEK-------------------------- 60 (222)
T ss_pred cCCchhHhhcccccchhhhhhcccccccccCCCCCcccccCCCCccchhhhHHh--------------------------
Confidence 4677999999999999999999999999999998766654433211 000000
Q ss_pred ceeEeeccceeeccccchhhcc-----cchhhhccccccccccCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 046743 324 TWGYCNHCTRVLNLPQCQYLLT-----SLNKQQQTSNSANAKEDSGKNGPKQSWKPPMGRGNRKDSRKRAFSEDDELDPM 398 (478)
Q Consensus 324 r~~Y~nH~Tr~q~lp~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~~r~~~~~~~~dpm 398 (478)
|-+|..++---...-|+.+ .-|+-+.-+.--......+.....++. +-+..++..||+...+..++|+|
T Consensus 61 ---f~~sh~ke~~g~~es~~~~~~~~~k~n~~~r~~~~~~~k~~rg~~~~~~~R---~~~reKr~~Rk~a~~e~kd~d~~ 134 (222)
T KOG3427|consen 61 ---FWSSHIKERIGVNESYHGYKLCPNKYNIYHRCSLYCVNKFNRGPLSQPSHR---YLKREKRLLRKYALEEGKDVDDK 134 (222)
T ss_pred ---hcccchhhhhcccccccccccCccccchhhhhhhhhccccccCCCcchhhh---hHHHHHHhccccccccccccccc
Confidence 1111111100000000000 011110000000000000110000000 11122334566666778999999
Q ss_pred CCCCCCCCCCCCcccCcccCCCCccccCCCCCCc
Q 046743 399 DPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLF 432 (478)
Q Consensus 399 dp~~y~d~p~g~w~~gl~~~~~~~~d~ta~g~l~ 432 (478)
++.+|++.|+++|..++.++....+|+||++-.|
T Consensus 135 ~~~e~~~y~r~k~avs~kg~~~~~ad~tas~~af 168 (222)
T KOG3427|consen 135 GCKEFYFYPRTKQAVSRKGPSHDPADPTASAGAF 168 (222)
T ss_pred chhhhccCCcccceecccCCCCCCCCccccccch
Confidence 9999999999999999999999999999998765
No 14
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.5e-06 Score=80.67 Aligned_cols=36 Identities=33% Similarity=0.721 Sum_probs=33.5
Q ss_pred cCCCCCcEEEEecCCCcEEEEeCCCCeeeccCCCCC
Q 046743 245 LSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGSS 280 (478)
Q Consensus 245 ~~LP~GWEE~~DpssGR~YYyN~~TgeTqWEdPr~~ 280 (478)
..||.+|+++.+.++||+||||+.|+++|||.|...
T Consensus 5 ~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t 40 (163)
T KOG3259|consen 5 EKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGT 40 (163)
T ss_pred ccCCchhheeccccCCCcceeccccchhhccCCCcc
Confidence 468999999999999999999999999999999863
No 15
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=97.95 E-value=7.8e-06 Score=80.47 Aligned_cols=63 Identities=24% Similarity=0.430 Sum_probs=53.6
Q ss_pred cCCCCCcEEEEecCCCcEEEEeCCCCeeeccCCCCCCCCCCcCCCCccCcCCCCCCCCCCCCCCccccCCCCCc--cCcc
Q 046743 245 LSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGSSKPVASEQSDSNASRNTTNGIWDNPSSGLERCLHCGGWG--VGLV 322 (478)
Q Consensus 245 ~~LP~GWEE~~DpssGR~YYyN~~TgeTqWEdPr~~~pv~S~~aa~~~~~~~~~Gs~~~pgs~~~~~plPpGWe--Vg~d 322 (478)
-+||+||..-+.. .||+||+||++++|-|..|-. +.-+|+||. +.+.
T Consensus 92 lPLPpgWav~~T~-~grkYYIDHn~~tTHW~HPle------------------------------rEgLppGW~rv~s~e 140 (271)
T KOG1891|consen 92 LPLPPGWAVEFTT-EGRKYYIDHNNRTTHWVHPLE------------------------------REGLPPGWKRVFSPE 140 (271)
T ss_pred CCCCCCcceeeEe-cCceeEeecCCCcccccChhh------------------------------hccCCcchhhccccc
Confidence 4799999999876 999999999999999999854 234899999 7889
Q ss_pred cceeEeeccceeeccc
Q 046743 323 QTWGYCNHCTRVLNLP 338 (478)
Q Consensus 323 Gr~~Y~nH~Tr~q~lp 338 (478)
.-+||.+|.++..-..
T Consensus 141 ~GtyY~~~~~k~tQy~ 156 (271)
T KOG1891|consen 141 KGTYYYHEEMKRTQYE 156 (271)
T ss_pred cceeeeecccchhhhc
Confidence 9999999998874333
No 16
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=97.50 E-value=8.6e-05 Score=82.58 Aligned_cols=81 Identities=22% Similarity=0.346 Sum_probs=64.3
Q ss_pred CCCCCCCCCcEEEEcCCCCceeeeeCCCCCeeccCCCcccccCCCC--CCcCCCCCcEEEEecCCCcEEEEeCCCCeeec
Q 046743 197 DDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTP--SHLSLMEDWIEAVDETSGHKYYYNKRTHVSQW 274 (478)
Q Consensus 197 ~~~e~LPpGWEe~~Dp~SGR~YYyN~~TgeTTWErP~~~~~~~~~p--a~~~LP~GWEE~~DpssGR~YYyN~~TgeTqW 274 (478)
+...+||..|+..++.. |-+||.+|+|++|+|.+|+......... ....+|.+|+..-|+ -=..|||+|.+..|++
T Consensus 218 ~~~gplp~nwemayte~-gevyfiDhntkttswLdprl~kkaK~~eeckd~elPygWeki~dp-iYg~yyvdHiN~~sq~ 295 (984)
T KOG3209|consen 218 DNLGPLPHNWEMAYTEQ-GEVYFIDHNTKTTSWLDPRLTKKAKPPEECKDQELPYGWEKIEDP-IYGTYYVDHINRKSQY 295 (984)
T ss_pred cccCCCCccceEeEeec-CeeEeeecccccceecChhhhcccCChhhcccccccccccccCCc-cceeEEecccchhhhh
Confidence 34567999999999996 9999999999999999999433211100 124589999999887 4458999999999999
Q ss_pred cCCCC
Q 046743 275 VHPGS 279 (478)
Q Consensus 275 EdPr~ 279 (478)
+-|.+
T Consensus 296 enpvl 300 (984)
T KOG3209|consen 296 ENPVL 300 (984)
T ss_pred ccchh
Confidence 98865
No 17
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=97.10 E-value=0.00011 Score=78.15 Aligned_cols=68 Identities=31% Similarity=0.411 Sum_probs=52.0
Q ss_pred cCCCCCcEEEEecCCCcEEEEeCCCCeeeccCCCCCCCCCCcCCCCccCcCCCCCCCCCCCCCCccccCCCCCc--cCcc
Q 046743 245 LSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGSSKPVASEQSDSNASRNTTNGIWDNPSSGLERCLHCGGWG--VGLV 322 (478)
Q Consensus 245 ~~LP~GWEE~~DpssGR~YYyN~~TgeTqWEdPr~~~pv~S~~aa~~~~~~~~~Gs~~~pgs~~~~~plPpGWe--Vg~d 322 (478)
+.....|++..++ +||+||||..|+.++||+|.+... +++....--+|- ..-|
T Consensus 11 ~~~~s~w~e~k~~-dgRiYYYN~~T~kS~weKPkell~------------------------~~e~~l~~~~Wke~~Tad 65 (590)
T COG5104 11 GEARSEWEELKAP-DGRIYYYNKRTGKSSWEKPKELLK------------------------GSEEDLDVDPWKECRTAD 65 (590)
T ss_pred ccHHHHHHHhhCC-CCceEEEecccccccccChHHHhc------------------------chHhhhchhhHHHHhhcC
Confidence 4456789999998 999999999999999999965320 111112234687 7779
Q ss_pred cceeEeeccceeecc
Q 046743 323 QTWGYCNHCTRVLNL 337 (478)
Q Consensus 323 Gr~~Y~nH~Tr~q~l 337 (478)
|..+|-|-+||+.-|
T Consensus 66 GkvyyyN~~TREs~W 80 (590)
T COG5104 66 GKVYYYNSITRESRW 80 (590)
T ss_pred CceEEecCccccccc
Confidence 999999999999443
No 18
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0013 Score=68.69 Aligned_cols=131 Identities=12% Similarity=0.095 Sum_probs=84.4
Q ss_pred CCCCCCCCcEEEEcCCCC---ceeeeeCCCC-CeeccCCCcccccCCCC-----CCcCCCCCcEEEEecCCCcEEEEeCC
Q 046743 198 DREKLLPGWVEAKDPASG---ASYYYNESTG-KSQWERPVETSSRAQTP-----SHLSLMEDWIEAVDETSGHKYYYNKR 268 (478)
Q Consensus 198 ~~e~LPpGWEe~~Dp~SG---R~YYyN~~Tg-eTTWErP~~~~~~~~~p-----a~~~LP~GWEE~~DpssGR~YYyN~~ 268 (478)
+..+||.+|....+.+ | ..||+++.+. .|+|..|.....+..-. .-...-.+|+..++. +|+.|||||.
T Consensus 57 dy~glprewf~~lS~e-~~~p~~~~~~~~~~~~tlq~~P~sg~~p~~l~~~~~vg~~~~l~~~h~~~~~-~g~r~F~~~i 134 (358)
T KOG0940|consen 57 DYGGLPREWFFLLSHE-GFNPWYGLFQHSRKDYTLWLNPRSGVNPGHLTYFRFVGGVLALAGWHMRFTD-TGQRPFYKHI 134 (358)
T ss_pred ccCCCCcceeeeeccc-cCCcceeeeeecccccccccCCccCCCCCcccccccccccccccceeeEecC-CCceehhhhh
Confidence 4457899999999998 7 9999999999 59999998762221000 000112389999987 8899999999
Q ss_pred CCeeeccCCCCCCCCCCcCCCCccCcCCCCCCCC--------CCCCC-CccccCCCCCc--cCcccceeEeeccce
Q 046743 269 THVSQWVHPGSSKPVASEQSDSNASRNTTNGIWD--------NPSSG-LERCLHCGGWG--VGLVQTWGYCNHCTR 333 (478)
Q Consensus 269 TgeTqWEdPr~~~pv~S~~aa~~~~~~~~~Gs~~--------~pgs~-~~~~plPpGWe--Vg~dGr~~Y~nH~Tr 333 (478)
.+.++|-+|+.........+.. ...++.+.. ....+ -....-|.||. |......-|+.+++.
T Consensus 135 ~~ktt~ldd~e~~d~e~~~s~~---~~~en~~~~~~~f~~~~~~~g~~~~~~l~p~g~~~~v~~~n~~~yi~~l~~ 207 (358)
T KOG0940|consen 135 LKKTTTLDDREAVDPEFYNSLT---WIRENDPTNDLTFSVESEVLGQITTQELKPNGANIQVTEENKKEYIMLLQN 207 (358)
T ss_pred hcCccccCchhhcCcccccccc---ccccCCcccchhhhcchhhcCCccceeecCCCcccccccccHHHHHHHHHH
Confidence 9999988887752221111111 111111100 00001 12345688898 777888888888865
No 19
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=94.29 E-value=0.13 Score=56.56 Aligned_cols=36 Identities=25% Similarity=0.566 Sum_probs=31.2
Q ss_pred CCC-CCcEEEEcCCCCceeeeeCCCCCeeccCCCcccc
Q 046743 201 KLL-PGWVEAKDPASGASYYYNESTGKSQWERPVETSS 237 (478)
Q Consensus 201 ~LP-pGWEe~~Dp~SGR~YYyN~~TgeTTWErP~~~~~ 237 (478)
++| ..|-.+++-+ +++||||+.|..+.|++|.+...
T Consensus 110 ~ipgtdWcVVwTgD-~RvFFyNpktk~S~We~P~dlk~ 146 (617)
T KOG0155|consen 110 PIPGTDWCVVWTGD-NRVFFYNPKTKLSVWERPLDLKG 146 (617)
T ss_pred CCCCCCeEEEEeCC-CceEEeCCccccccccCchhhcc
Confidence 355 3499999998 99999999999999999988743
No 20
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification]
Probab=91.10 E-value=0.026 Score=61.09 Aligned_cols=306 Identities=13% Similarity=0.018 Sum_probs=183.9
Q ss_pred CCCChhhHHHHHHHHHHhhhhhhHHHHHhhhhhccccCC-CCCCCccccccCCChhhHHHHHHhhchhHHHHHHHhcCCC
Q 046743 20 TNASANDIEAAAREAVLREQEIETQKIIQGQREEGVVGA-SHHDGADIFAKRSDPNALKEHLLKMTSEHRAEMALKRGKP 98 (478)
Q Consensus 20 ~~~~~~~ie~a~~~a~l~eq~~~tq~~i~~qr~~~~~~~-~~~~~~d~~~~r~d~~alke~llk~t~~hr~e~a~krg~~ 98 (478)
-.....++..+-.+++...|+...+.+++.++.+.+..+ .....++|.+ ...+.+..|+..++..++.+.+.+| +-
T Consensus 85 ~~~~~~~~kk~k~d~~~~l~e~~~~~~~~~~~~~~~~fa~~p~~~~~~~~--~~r~~~~nci~el~~~ek~k~~~~r-~r 161 (463)
T KOG0152|consen 85 VLEESLDVKKAKEDFLQMLQEESKYKSSTEWKTAKELFAGDPRWSEHISE--DGRKIYENCITELSQREKEKKLEDR-KR 161 (463)
T ss_pred hhhhhhhhhhhHHHHHHhHhhcccccccccccccccccccccchhhccch--hhHHHHHHHHHHHHHhhhHHHHHHH-Hh
Confidence 344567889999999999999999999999999998877 6666777766 5678999999999999999999998 33
Q ss_pred CCC---CCCceeecccccCCCccccccccccchhcccCCCCCCCCcCc------cc-cCCcccc--C---------CCCC
Q 046743 99 TGP---NQGNTEIGNGYGVPGGVAYYNVQSTAITRTQGAGNDGMGQRN------LK-LDSESEQ--K---------PVTK 157 (478)
Q Consensus 99 ~~~---~~g~~~igngygvpgg~ay~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~e~--~---------~~~~ 157 (478)
=.. +-.+.+-.++|+...+.||-....++-|.-. +|.--+.+ +. +..+-++ . .+-.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~---ldked~l~~~e~~i~~~e~e~~~~~~~~~~~~~~~Rk~rD 238 (463)
T KOG0152|consen 162 NLAADKHLLNSESSIGLDRDWRRAQGRLTEDSGFSED---LDKEDALINFEEHIKDLEKEEDEKEQERKRNKRQERKNRD 238 (463)
T ss_pred hhHhhhcchhccccccccchHHHHhhhhhcccccccc---cchHHhhhhHHHHHhHHHHhhhhhcchhhhhhhhhhhhhh
Confidence 223 3335666899999999988665442222111 11111111 00 0111000 0 1111
Q ss_pred CCCHHHHHhHhhccccccCCCCCCCCcccccccCCCcccCCCCCCC--CCcEEEEcCCCCceeeeeCCCCCeeccCCCcc
Q 046743 158 ELPEYLKQRLRARGILKDTSENGDPPRINNKLESTSAQLDDREKLL--PGWVEAKDPASGASYYYNESTGKSQWERPVET 235 (478)
Q Consensus 158 ~LPp~L~qRL~~RGIl~~~~~~s~p~~ia~n~~~~s~~~~~~e~LP--pGWEe~~Dp~SGR~YYyN~~TgeTTWErP~~~ 235 (478)
+ =..|.+-|-+.|.+....--.+-.++-.+ +..........+.+ ..|+-.+++-..+.|+|....+.+.|+++...
T Consensus 239 ~-~~~lL~~~~~~~ki~s~T~w~~~~~~i~~-~~r~~~~ln~sgstp~dlf~d~ve~l~~~~~~~~~~i~~~~~~~~~~~ 316 (463)
T KOG0152|consen 239 A-FRSLLQELPATGKITSTTGWEDLFPSIKD-DPRSANALNQSGSTPLDLFEDPVEPLEPRYYEYPPLIKDCLKERQIEL 316 (463)
T ss_pred h-hhhHHHhhccccccccccCCccccchhcC-CcchHhhcCCCCCChhhcccccccccccccccchHHHHHHHHhhcccc
Confidence 2 33444555556644333322211111111 11111111122223 57888888888889999999999999998876
Q ss_pred cccCCC--CCCcCCCCCcEEEEecCCCcEEEEeCCCCeeeccCCCCCCCCCC--cCCCC---ccCcCCCCCC-CCCCCCC
Q 046743 236 SSRAQT--PSHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGSSKPVAS--EQSDS---NASRNTTNGI-WDNPSSG 307 (478)
Q Consensus 236 ~~~~~~--pa~~~LP~GWEE~~DpssGR~YYyN~~TgeTqWEdPr~~~pv~S--~~aa~---~~~~~~~~Gs-~~~pgs~ 307 (478)
...... ......-..|.+.++..+...||.+-..+..+|+..+.....-. ..+.- ..... ...+ ...+...
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~f~~~l~~~-~~~~~~~~~~~a 395 (463)
T KOG0152|consen 317 SAQTSLQEFNSVLSKDKENEKVDAASMKLVFQSLIEKAKSKIPERKRIENRRLRRHANNFRNLLKSL-NGIPKSSTWDSA 395 (463)
T ss_pred cchhhHHHhhhhhhhhhccccccHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccCCchhh
Confidence 433211 11122345677778888889999999999999988775411100 00000 00000 0011 1123334
Q ss_pred CccccCCCCCc-cC--cccceeEeecccee
Q 046743 308 LERCLHCGGWG-VG--LVQTWGYCNHCTRV 334 (478)
Q Consensus 308 ~~~~plPpGWe-Vg--~dGr~~Y~nH~Tr~ 334 (478)
.+++-.+++|+ ++ ..-.+.|+.+|+..
T Consensus 396 ~p~~~~s~~~~~~~~e~~~~~~~~~~~t~~ 425 (463)
T KOG0152|consen 396 KPLVEDSEEFSALGSEESRVPGFPDYVTPL 425 (463)
T ss_pred ccccccChhhhhcCCccccceeccccccch
Confidence 67888888888 44 47788999999887
No 21
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=83.19 E-value=1 Score=49.60 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=33.6
Q ss_pred CCCCCCCCCcEEEEcCCCCceeeeeCCCCCeeccCCCcc
Q 046743 197 DDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVET 235 (478)
Q Consensus 197 ~~~e~LPpGWEe~~Dp~SGR~YYyN~~TgeTTWErP~~~ 235 (478)
+-.++||.||...+.. +|-+-||+..|+.++|.||--.
T Consensus 150 ~~~epLPeGW~~i~Hn-SGmPvylHr~tRVvt~SrPYfl 187 (650)
T KOG4334|consen 150 DKSEPLPEGWTVISHN-SGMPVYLHRFTRVVTHSRPYFL 187 (650)
T ss_pred CCCCcCCCceEEEeec-CCCceEEeeeeeeEeccCceee
Confidence 3467999999998876 6999999999999999999765
No 22
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=82.82 E-value=1.7 Score=49.11 Aligned_cols=77 Identities=21% Similarity=0.313 Sum_probs=60.5
Q ss_pred CCcEEEEcCCCCceeeeeCCCCCeeccC---CCcccccCCCC--------CCcCCCCCcEEEEecCCCcEEEEeCCCCee
Q 046743 204 PGWVEAKDPASGASYYYNESTGKSQWER---PVETSSRAQTP--------SHLSLMEDWIEAVDETSGHKYYYNKRTHVS 272 (478)
Q Consensus 204 pGWEe~~Dp~SGR~YYyN~~TgeTTWEr---P~~~~~~~~~p--------a~~~LP~GWEE~~DpssGR~YYyN~~TgeT 272 (478)
..|...++..+|+.|||+..|+.++|+- +.......+.+ ....+...|..+.....+..+|+|..+++|
T Consensus 271 ~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~net 350 (650)
T KOG1450|consen 271 TVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKNKSTRKNTLWLTTNRTSKVLNRSHNET 350 (650)
T ss_pred cccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccccCCccceeeeeecCCceeeecCCCCc
Confidence 5799999999999999999999999995 22111111111 234578899999998899999999999999
Q ss_pred eccCCCCC
Q 046743 273 QWVHPGSS 280 (478)
Q Consensus 273 qWEdPr~~ 280 (478)
.|++.-..
T Consensus 351 ~~~d~~~~ 358 (650)
T KOG1450|consen 351 SFEDWSSN 358 (650)
T ss_pred cccchhhc
Confidence 99987553
No 23
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=76.28 E-value=1.5 Score=46.38 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=31.1
Q ss_pred CCCCCCCCcEEEEcCCCCceeeeeCCCCCeeccCCCcc
Q 046743 198 DREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVET 235 (478)
Q Consensus 198 ~~e~LPpGWEe~~Dp~SGR~YYyN~~TgeTTWErP~~~ 235 (478)
+..+|| +|+.+++.. |+.|||||+.+.|+|..|...
T Consensus 111 ~~~~l~-~~h~~~~~~-g~r~F~~~i~~ktt~ldd~e~ 146 (358)
T KOG0940|consen 111 GVLALA-GWHMRFTDT-GQRPFYKHILKKTTTLDDREA 146 (358)
T ss_pred cccccc-ceeeEecCC-CceehhhhhhcCccccCchhh
Confidence 344555 999999996 999999999999999999876
No 24
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=68.98 E-value=4.9 Score=44.51 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=32.9
Q ss_pred CCcCCCCCcEEEEecCCCcEEEEeCCCCeeeccCCCCC
Q 046743 243 SHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGSS 280 (478)
Q Consensus 243 a~~~LP~GWEE~~DpssGR~YYyN~~TgeTqWEdPr~~ 280 (478)
...+||.||...+. ++|-+-||+..|+..+|-+|=..
T Consensus 151 ~~epLPeGW~~i~H-nSGmPvylHr~tRVvt~SrPYfl 187 (650)
T KOG4334|consen 151 KSEPLPEGWTVISH-NSGMPVYLHRFTRVVTHSRPYFL 187 (650)
T ss_pred CCCcCCCceEEEee-cCCCceEEeeeeeeEeccCceee
Confidence 45689999999986 49999999999999999999765
No 25
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.02 E-value=0.68 Score=53.91 Aligned_cols=137 Identities=14% Similarity=0.206 Sum_probs=96.4
Q ss_pred CCCCCCCCCcEEEEcCCCCceeeeeCCCCCeeccCCCccccc--------C----C-----------C----C-------
Q 046743 197 DDREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSSR--------A----Q-----------T----P------- 242 (478)
Q Consensus 197 ~~~e~LPpGWEe~~Dp~SGR~YYyN~~TgeTTWErP~~~~~~--------~----~-----------~----p------- 242 (478)
++...+++.|+...|-- |++||+.|.+..++|.+|...... . . . +
T Consensus 294 ~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~ 372 (872)
T COG5021 294 DSLLRLNSLFSTRADSF-GRTYYLDHDRILTQYSRPLLEETLGESTSFLVVNNDDSSSIKDLPHQVGSNPFLEAHPEFSE 372 (872)
T ss_pred hhcccccccccchhhhc-chhhhhhhhhhhhhhhhccchhhhhhhhhhccccccchhhhhhcccccCCcccccccHHHHH
Confidence 34456789999999997 999999999999999999432100 0 0 0 0
Q ss_pred -----------CCcCCCCCcEEEEecCCCcEEEEeCCCCeeeccCCCCCCCCC-CcCCCCccCcCCCCCCCCCCCCCCcc
Q 046743 243 -----------SHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGSSKPVA-SEQSDSNASRNTTNGIWDNPSSGLER 310 (478)
Q Consensus 243 -----------a~~~LP~GWEE~~DpssGR~YYyN~~TgeTqWEdPr~~~pv~-S~~aa~~~~~~~~~Gs~~~pgs~~~~ 310 (478)
.....+.+|+..+-. .++.|++++.+..+.|+.|+..+-.. ...+- . . .+...+..-..+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~-~~~~~~~~~~~~ 444 (872)
T COG5021 373 LLKNQSRGTTRDFRNKPTGWSSSIED-LGQFLFSDFLTSSSTYEDLRREQLGRESDESF-Y-----V-ASNVQQQRASRE 444 (872)
T ss_pred HHhhhcccccchhhcCCccchhhhhh-hHHHHHhhhhcchhhhhchhhhhhhhhhccch-h-----h-hccccccccccc
Confidence 012468999999855 79999999999999999998743222 11110 0 0 000111111456
Q ss_pred ccCCCCCc--cCcccceeEeeccceeeccccchh
Q 046743 311 CLHCGGWG--VGLVQTWGYCNHCTRVLNLPQCQY 342 (478)
Q Consensus 311 ~plPpGWe--Vg~dGr~~Y~nH~Tr~q~lp~~~~ 342 (478)
.+++-+|. +-..-+.++..|.++..|+-+.++
T Consensus 445 ~~l~~~~~~r~~~~~~~~~~~h~k~~~~~~~~~~ 478 (872)
T COG5021 445 GPLLSGWKTRLNNLYRFYFVEHRKKTLTKNDSRL 478 (872)
T ss_pred ccccchHHHHhhhhheeeehhcccceeeecCCCC
Confidence 78999999 778999999999999999888763
No 26
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=67.01 E-value=3.6 Score=43.08 Aligned_cols=54 Identities=31% Similarity=0.455 Sum_probs=39.1
Q ss_pred CCeeccCCCcccccCCCCCCcCCCCCcEEEEecCCCcEEEEeCCCCeeeccCCCCCCC
Q 046743 225 GKSQWERPVETSSRAQTPSHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGSSKP 282 (478)
Q Consensus 225 geTTWErP~~~~~~~~~pa~~~LP~GWEE~~DpssGR~YYyN~~TgeTqWEdPr~~~p 282 (478)
...+|..|........ .......|.+...+ +|..||+|..|+++.|..|+..+.
T Consensus 130 ~a~q~~~~~g~v~~~e---~~~~~k~wv~~Kne-s~~~yy~n~~t~esvwk~P~~~~t 183 (336)
T KOG0150|consen 130 PALQEYIPTGLVTKDE---ANAETKEWVEGKNE-SGPTYYSNKRTNESVWKPPRISFT 183 (336)
T ss_pred ccchhhccccccchhh---hhhhhhhcccccCC-CCCCcceecCCCccccCCCCcccc
Confidence 4566777765543321 12345678888877 899999999999999999996543
No 27
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=55.34 E-value=3.4 Score=47.64 Aligned_cols=32 Identities=28% Similarity=0.613 Sum_probs=28.2
Q ss_pred CCCCcEEEEecCCCcEEEEeCCCCeeeccCCCC
Q 046743 247 LMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGS 279 (478)
Q Consensus 247 LP~GWEE~~DpssGR~YYyN~~TgeTqWEdPr~ 279 (478)
..-.|+..+.+ +--+||+||.|.+|+|+.|..
T Consensus 350 vq~pw~rais~-nkvpyyinh~~q~t~wdhp~~ 381 (966)
T KOG4286|consen 350 VQGPWERAISP-NKVPYYINHETQTTCWDHPKM 381 (966)
T ss_pred CcccchhccCc-cccchhhcccchhhhccchHH
Confidence 34569999988 889999999999999999974
No 28
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=55.12 E-value=3.9 Score=47.18 Aligned_cols=30 Identities=30% Similarity=0.649 Sum_probs=27.2
Q ss_pred CCcEEEEcCCCCceeeeeCCCCCeeccCCCc
Q 046743 204 PGWVEAKDPASGASYYYNESTGKSQWERPVE 234 (478)
Q Consensus 204 pGWEe~~Dp~SGR~YYyN~~TgeTTWErP~~ 234 (478)
-.|++.+.++ --+||.||.|.+|+|++|..
T Consensus 352 ~pw~rais~n-kvpyyinh~~q~t~wdhp~~ 381 (966)
T KOG4286|consen 352 GPWERAISPN-KVPYYINHETQTTCWDHPKM 381 (966)
T ss_pred ccchhccCcc-ccchhhcccchhhhccchHH
Confidence 3499999995 99999999999999999964
No 29
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=50.73 E-value=8.5 Score=40.38 Aligned_cols=33 Identities=36% Similarity=0.735 Sum_probs=28.9
Q ss_pred CCCcEEEEcCCCCceeeeeCCCCCeeccCCCccc
Q 046743 203 LPGWVEAKDPASGASYYYNESTGKSQWERPVETS 236 (478)
Q Consensus 203 PpGWEe~~Dp~SGR~YYyN~~TgeTTWErP~~~~ 236 (478)
-..|.+-..+. |-.||||..|+++.|..|....
T Consensus 150 ~k~wv~~Knes-~~~yy~n~~t~esvwk~P~~~~ 182 (336)
T KOG0150|consen 150 TKEWVEGKNES-GPTYYSNKRTNESVWKPPRISF 182 (336)
T ss_pred hhhcccccCCC-CCCcceecCCCccccCCCCccc
Confidence 35799999996 9999999999999999998553
No 30
>KOG3552 consensus FERM domain protein FRM-8 [General function prediction only]
Probab=43.52 E-value=7.4 Score=46.06 Aligned_cols=52 Identities=27% Similarity=0.512 Sum_probs=38.4
Q ss_pred CCCeeccCCCcccccCCCCCCcCCCCCcEEEEecCCCcEEEEeCCCCeeeccCCCCCC
Q 046743 224 TGKSQWERPVETSSRAQTPSHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGSSK 281 (478)
Q Consensus 224 TgeTTWErP~~~~~~~~~pa~~~LP~GWEE~~DpssGR~YYyN~~TgeTqWEdPr~~~ 281 (478)
|.++.|-.|...-.. ...++.+|++.+|. .||.||+||..++++.+.|....
T Consensus 2 ~~~a~~~p~~~~~~~-----~~~v~~~~~r~~ds-k~r~~y~~~~~~~~~~~~~~~i~ 53 (1298)
T KOG3552|consen 2 TQSAGWLPACEDWSK-----HEELSYGWERAIDS-KGRSYYINHLNKTTTYEAPECIR 53 (1298)
T ss_pred cccccCCCCcccccc-----ccccchHHHHhhhc-ccchhHHhhcCCccCcCCCcccc
Confidence 455667666543221 13578999999986 99999999999999988887654
No 31
>KOG3552 consensus FERM domain protein FRM-8 [General function prediction only]
Probab=36.61 E-value=9.1 Score=45.37 Aligned_cols=37 Identities=35% Similarity=0.581 Sum_probs=29.6
Q ss_pred CCCCCCCCcEEEEcCCCCceeeeeCCCCCeeccCCCcc
Q 046743 198 DREKLLPGWVEAKDPASGASYYYNESTGKSQWERPVET 235 (478)
Q Consensus 198 ~~e~LPpGWEe~~Dp~SGR~YYyN~~TgeTTWErP~~~ 235 (478)
..+.|+.+|++.+|.. ||.||+||...+++.+.|...
T Consensus 16 ~~~~v~~~~~r~~dsk-~r~~y~~~~~~~~~~~~~~~i 52 (1298)
T KOG3552|consen 16 KHEELSYGWERAIDSK-GRSYYINHLNKTTTYEAPECI 52 (1298)
T ss_pred cccccchHHHHhhhcc-cchhHHhhcCCccCcCCCccc
Confidence 3466888999999886 899999988888887777544
No 32
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.29 E-value=8.5 Score=45.24 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=63.0
Q ss_pred CCCCCCcEEEEcCCCCceeeeeCCCCCeeccCCCcccccC--------------CC-CCCcCCCCCcEEEEecCCCcEEE
Q 046743 200 EKLLPGWVEAKDPASGASYYYNESTGKSQWERPVETSSRA--------------QT-PSHLSLMEDWIEAVDETSGHKYY 264 (478)
Q Consensus 200 e~LPpGWEe~~Dp~SGR~YYyN~~TgeTTWErP~~~~~~~--------------~~-pa~~~LP~GWEE~~DpssGR~YY 264 (478)
..+|.+|+..+... ++.|++++.+..+.|+.|....-.. +. ....+++.+|+.++- ..-++|+
T Consensus 386 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~-~~~~~~~ 463 (872)
T COG5021 386 RNKPTGWSSSIEDL-GQFLFSDFLTSSSTYEDLRREQLGRESDESFYVASNVQQQRASREGPLLSGWKTRLN-NLYRFYF 463 (872)
T ss_pred hcCCccchhhhhhh-HHHHHhhhhcchhhhhchhhhhhhhhhccchhhhcccccccccccccccchHHHHhh-hhheeee
Confidence 45789999999986 9999999999999999997642111 01 124678999999985 4889999
Q ss_pred EeCCCCeeeccCCC
Q 046743 265 YNKRTHVSQWVHPG 278 (478)
Q Consensus 265 yN~~TgeTqWEdPr 278 (478)
..|.+.+.+|.+++
T Consensus 464 ~~h~k~~~~~~~~~ 477 (872)
T COG5021 464 VEHRKKTLTKNDSR 477 (872)
T ss_pred hhcccceeeecCCC
Confidence 99999999999997
No 33
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=31.00 E-value=52 Score=27.64 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=16.6
Q ss_pred CCCCCCcEEEEcCCC------CceeeeeCCC
Q 046743 200 EKLLPGWVEAKDPAS------GASYYYNEST 224 (478)
Q Consensus 200 e~LPpGWEe~~Dp~S------GR~YYyN~~T 224 (478)
..||+||++.+-... .-+|||.+..
T Consensus 5 ~~lp~GW~r~~~~R~~gs~~k~DvyY~sP~G 35 (77)
T cd01396 5 PRLPPGWKRELVPRKSGSAGKFDVYYISPTG 35 (77)
T ss_pred CCCCCCCEEEEEEecCCCCCcceEEEECCCC
Confidence 359999977663332 2489997754
No 34
>PF09003 Phage_integ_N: Bacteriophage lambda integrase, N-terminal domain ; InterPro: IPR015094 The amino terminal domain of bacteriophage lambda integrase folds into a three-stranded, antiparallel beta-sheet that packs against a C-terminal alpha-helix, adopting a fold that is structurally related to the three-stranded beta-sheet family of DNA-binding domains (which includes the GCC-box DNA-binding domain and the N-terminal domain of Tn916 integrase). This domain is responsible for high-affinity binding to each of the five DNA arm-type sites and is also a context-sensitive modulator of DNA cleavage []. ; GO: 0003677 DNA binding, 0008907 integrase activity, 0015074 DNA integration; PDB: 1Z1G_B 1Z1B_A 2WCC_3 1KJK_A.
Probab=28.31 E-value=35 Score=28.96 Aligned_cols=30 Identities=40% Similarity=0.600 Sum_probs=17.3
Q ss_pred CCCCCCcEEEEcCCCCceee-e-eCCCCCeec
Q 046743 200 EKLLPGWVEAKDPASGASYY-Y-NESTGKSQW 229 (478)
Q Consensus 200 e~LPpGWEe~~Dp~SGR~YY-y-N~~TgeTTW 229 (478)
..||+.-....|..+|+.|| | |+.|++...
T Consensus 10 ~~lP~NLy~~~dkr~~k~Yy~Yr~P~tGk~~~ 41 (75)
T PF09003_consen 10 RDLPPNLYCRKDKRNGKGYYQYRNPITGKEHG 41 (75)
T ss_dssp GGS-TTEEEETT-----SEEEEE-TTTS-EEE
T ss_pred CCCCCCccccCCcCcceeEEEEecCCCCceee
Confidence 46899999999987898887 6 788887543
No 35
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=28.24 E-value=1.1e+02 Score=31.52 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=45.9
Q ss_pred cEEEEcCCCCceeeeeCCCCCeeccCCCcccccCCCCCCcCCCCCcEEEEecCCCcEEEEeCCCCeeeccCCCC
Q 046743 206 WVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTPSHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGS 279 (478)
Q Consensus 206 WEe~~Dp~SGR~YYyN~~TgeTTWErP~~~~~~~~~pa~~~LP~GWEE~~DpssGR~YYyN~~TgeTqWEdPr~ 279 (478)
..-..+. .|..|-+|..|++..|..+...... . .+....+ ..++...+|..|-+|..|++..|..+..
T Consensus 122 ~v~v~~~-~g~l~ald~~tG~~~W~~~~~~~~~-s---sP~v~~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 122 KVYIGSE-KGQVYALNAEDGEVAWQTKVAGEAL-S---RPVVSDG-LVLVHTSNGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred EEEEEcC-CCEEEEEECCCCCCcccccCCCcee-c---CCEEECC-EEEEECCCCEEEEEEccCCCEeeeecCC
Confidence 3334444 4899999999999999987643211 1 1111222 3444455889999999999999998754
No 36
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=27.65 E-value=67 Score=25.47 Aligned_cols=25 Identities=32% Similarity=0.679 Sum_probs=17.6
Q ss_pred CCCCCCcEEEEcCC------CCceeeeeCCC
Q 046743 200 EKLLPGWVEAKDPA------SGASYYYNEST 224 (478)
Q Consensus 200 e~LPpGWEe~~Dp~------SGR~YYyN~~T 224 (478)
.+||.||++..-.. .+-+|||.+..
T Consensus 4 ~P~p~GW~R~~~~r~~g~~~k~dv~Y~sP~G 34 (62)
T cd00122 4 DPLPPGWKRELVIRKSGSAGKGDVYYYSPCG 34 (62)
T ss_pred CCCCCCeEEEEEEcCCCCCCcceEEEECCCC
Confidence 47899998877532 24589997653
No 37
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=25.54 E-value=67 Score=26.56 Aligned_cols=32 Identities=28% Similarity=0.396 Sum_probs=20.0
Q ss_pred CCCCCCCCcEEEEc-CCC------CceeeeeCCCCCeecc
Q 046743 198 DREKLLPGWVEAKD-PAS------GASYYYNESTGKSQWE 230 (478)
Q Consensus 198 ~~e~LPpGWEe~~D-p~S------GR~YYyN~~TgeTTWE 230 (478)
...+||.||...+- ..+ .-+|||.+ +|+.-..
T Consensus 7 ~~~~Lp~GW~re~~~R~~g~~~~~~dv~Y~sP-~Gk~~RS 45 (77)
T PF01429_consen 7 LDPPLPDGWKREVVVRKSGSSAGKKDVYYYSP-CGKRFRS 45 (77)
T ss_dssp EBTTSTTT-EEEEEESSSSTTTTSEEEEEEET-TSEEESS
T ss_pred ccCCCCCCCEEEEEEecCCCcCCceEEEEECC-CCCEEeC
Confidence 45689999987665 222 34799987 6655443
No 38
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=23.04 E-value=64 Score=31.20 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=19.1
Q ss_pred CChhhHHHHHHHHHHhhhhhhH
Q 046743 22 ASANDIEAAAREAVLREQEIET 43 (478)
Q Consensus 22 ~~~~~ie~a~~~a~l~eq~~~t 43 (478)
+--.|||+.++|+++||.=||-
T Consensus 142 d~QEd~E~sAReeL~REELiEE 163 (180)
T PLN00180 142 ERQEDIEESARAELWREELIEE 163 (180)
T ss_pred ehHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999998875
No 39
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=22.91 E-value=1.5e+02 Score=30.50 Aligned_cols=67 Identities=16% Similarity=0.128 Sum_probs=43.2
Q ss_pred EcCCCCceeeeeCCCCCeeccCCCcccccC-CCCCCcCCCCCcEEEEecCCCcEEEEeCCCCeeeccCCC
Q 046743 210 KDPASGASYYYNESTGKSQWERPVETSSRA-QTPSHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHPG 278 (478)
Q Consensus 210 ~Dp~SGR~YYyN~~TgeTTWErP~~~~~~~-~~pa~~~LP~GWEE~~DpssGR~YYyN~~TgeTqWEdPr 278 (478)
.+. .|..|-+|..|++..|..+....... .....+....+ ..++...+|+.|-+|..|++..|+.+.
T Consensus 166 ~~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~ 233 (394)
T PRK11138 166 HTS-NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFG-GAIVGGDNGRVSAVLMEQGQLIWQQRI 233 (394)
T ss_pred ECC-CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECC-EEEEEcCCCEEEEEEccCChhhheecc
Confidence 344 48999999999999999876421100 00000111122 244445588999999999999998653
No 40
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=22.88 E-value=1.7e+02 Score=29.72 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=44.5
Q ss_pred CcEEEEcCCCCceeeeeCCCCCeeccCCCcccccC-CCCCCcCCCCCcEEEEecCCCcEEEEeCCCCeeeccCC
Q 046743 205 GWVEAKDPASGASYYYNESTGKSQWERPVETSSRA-QTPSHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHP 277 (478)
Q Consensus 205 GWEe~~Dp~SGR~YYyN~~TgeTTWErP~~~~~~~-~~pa~~~LP~GWEE~~DpssGR~YYyN~~TgeTqWEdP 277 (478)
+..-.... .|..|-+|..|++..|+......... .....+....+ ..++...+|++|-+|..|++..|+..
T Consensus 146 ~~v~v~~~-~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~-~v~~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 146 GLVVVRTN-DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADG-GVLVGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred CEEEEECC-CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECC-EEEEECCCCEEEEEEccCCCEeeeec
Confidence 44444444 49999999999999998765432110 00011112223 23444447899999999999999864
No 41
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=22.36 E-value=80 Score=26.49 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=16.2
Q ss_pred CCCCCCcEEEEc-------CCCCceeeeeC
Q 046743 200 EKLLPGWVEAKD-------PASGASYYYNE 222 (478)
Q Consensus 200 e~LPpGWEe~~D-------p~SGR~YYyN~ 222 (478)
.+||.||++.+- ...+.+|||.+
T Consensus 6 ~Plp~GW~R~~~~r~~g~~~~~~dV~Y~sP 35 (77)
T smart00391 6 LPLPCGWRRETKQRKSGRSAGKFDVYYISP 35 (77)
T ss_pred CCCCCCcEEEEEEecCCCCCCcccEEEECC
Confidence 369999988775 11367899855
No 42
>COG3076 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.69 E-value=64 Score=29.75 Aligned_cols=50 Identities=40% Similarity=0.486 Sum_probs=34.1
Q ss_pred HHhhhhhhHHHHHhhhhhccccCCCCCCCccccccCCChhhHH--HHHHhhc----hhHHHHHHHhcCCCCC
Q 046743 35 VLREQEIETQKIIQGQREEGVVGASHHDGADIFAKRSDPNALK--EHLLKMT----SEHRAEMALKRGKPTG 100 (478)
Q Consensus 35 ~l~eq~~~tq~~i~~qr~~~~~~~~~~~~~d~~~~r~d~~alk--e~llk~t----~~hr~e~a~krg~~~~ 100 (478)
+|.||..||..||+ |+|..-+||+||- ||-|--- -|.-|=-|.|-|--+.
T Consensus 3 ~l~~~~~ETR~IIe----------------~LL~DGSdPdALY~IEHHl~~~dFd~LEK~AveAFK~GyEV~ 58 (135)
T COG3076 3 LLEEQREETRLIIE----------------ELLEDGSDPDALYTIEHHLSADDFETLEKAAVEAFKLGYEVT 58 (135)
T ss_pred hHHHHHHHHHHHHH----------------HHHhcCCCcchhhhhhhhhhhhHHHHHHHHHHHHHhhcceec
Confidence 67899999999996 6888889999995 4443211 1223444677776544
No 43
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=21.26 E-value=1.3e+02 Score=27.77 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=42.7
Q ss_pred EEEcCCCCceeeeeCCCCCeeccC-CCcccccCCCCCCcCCCCCcEEEEecCCCcEEEEeCCCCeeeccCCCC
Q 046743 208 EAKDPASGASYYYNESTGKSQWER-PVETSSRAQTPSHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGS 279 (478)
Q Consensus 208 e~~Dp~SGR~YYyN~~TgeTTWEr-P~~~~~~~~~pa~~~LP~GWEE~~DpssGR~YYyN~~TgeTqWEdPr~ 279 (478)
-....+ ++.|.+|..|++..|.. ........-.........+-..++...+|..|-+|..|+...|+.+..
T Consensus 80 ~v~~~~-~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 80 YVGTSD-GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp EEEETT-SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred ccccce-eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 333444 79999999999999984 322100000000001111333344444899999999999999998763
No 44
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=21.16 E-value=1.8e+02 Score=29.57 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=45.0
Q ss_pred cEEEEcCCCCceeeeeCCCCCeeccCCCcccccCCCCCCcCCCCCcEEEEecCCCcEEEEeCCCCeeeccCCCC
Q 046743 206 WVEAKDPASGASYYYNESTGKSQWERPVETSSRAQTPSHLSLMEDWIEAVDETSGHKYYYNKRTHVSQWVHPGS 279 (478)
Q Consensus 206 WEe~~Dp~SGR~YYyN~~TgeTTWErP~~~~~~~~~pa~~~LP~GWEE~~DpssGR~YYyN~~TgeTqWEdPr~ 279 (478)
..-..+.+ |..|-+|..|++..|......... ..+....+. .++...+|..|-+|..|++..|+....
T Consensus 107 ~v~v~~~~-g~l~ald~~tG~~~W~~~~~~~~~----~~p~v~~~~-v~v~~~~g~l~a~d~~tG~~~W~~~~~ 174 (377)
T TIGR03300 107 LVFVGTEK-GEVIALDAEDGKELWRAKLSSEVL----SPPLVANGL-VVVRTNDGRLTALDAATGERLWTYSRV 174 (377)
T ss_pred EEEEEcCC-CEEEEEECCCCcEeeeeccCceee----cCCEEECCE-EEEECCCCeEEEEEcCCCceeeEEccC
Confidence 33334454 899999999999999877543211 011122333 334445899999999999999987653
Done!