BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046745
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 3 LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
+PI + HW L VVD I+ YDSM + N++ R LL + ++ E +
Sbjct: 112 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFD 166
Query: 63 PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
+ ++ SK + ++IPQQ +G DCG F +Y + + + +N + QQ H+ FR+
Sbjct: 167 TNGWQLFSK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRK 218
Query: 123 ALAVKLFGHR 132
+ ++ HR
Sbjct: 219 RMVWEIL-HR 227
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 3 LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
+PI + HW L VVD I+ YDSM + N++ R LL + ++ E +
Sbjct: 108 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFD 162
Query: 63 PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
+ ++ SK + ++IPQQ +G DCG F +Y + + + +N + QQ H+ FR+
Sbjct: 163 TNGWQLFSK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRK 214
Query: 123 ALAVKLFGHR 132
+ ++ HR
Sbjct: 215 RMVWEIL-HR 223
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 3 LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
+PI + HW L VVD I+ YDSM + N++ R LL + ++ E +
Sbjct: 120 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFD 174
Query: 63 PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
+ ++ SK + ++IPQQ +G DCG F +Y + + + +N + QQ H+ FR+
Sbjct: 175 TNGWQLFSK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRK 226
Query: 123 ALAVKLFGHR 132
+ ++ HR
Sbjct: 227 RMVWEIL-HR 235
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 3 LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
+PI + HW L VVD I+ YDSM + N++ + +LQ + +
Sbjct: 108 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRI------------LLQYLKQESID 155
Query: 63 PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
E + + IPQQ +G DCG F +Y + + + +N + QQ H+ FR+
Sbjct: 156 KKRKEFDTNGWQLFSKKSQIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRK 213
Query: 123 ALAVKLFGHR 132
+ ++ HR
Sbjct: 214 RMVWEIL-HR 222
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 3 LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
+PI + HW L VVD I+ YDSM + N++ R LL + ++ E +
Sbjct: 108 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFD 162
Query: 63 PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
+ ++ SK + ++IPQQ +G D G F +Y + + + +N + QQ H+ FR+
Sbjct: 163 TNGWQLFSK------KSQEIPQQMNGSDAGMFACKYADCITKDRPIN-FTQQ-HMPYFRK 214
Query: 123 ALAVKLFGHR 132
+ ++ HR
Sbjct: 215 RMVWEIL-HR 223
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 3 LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
+PI + HW L VVD I+ YDSM + N++ R LL + ++ E +
Sbjct: 87 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFD 141
Query: 63 PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
+ ++ SK + ++IPQQ +G D G F +Y + + + +N + QQ H+ FR+
Sbjct: 142 TNGWQLFSK------KSQEIPQQMNGSDSGMFACKYADCITKDRPIN-FTQQ-HMPYFRK 193
Query: 123 ALAVKLFGHR 132
+ ++ HR
Sbjct: 194 RMVWEIL-HR 202
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1
pdb|1TH0|A Chain A, Structure Of Human Senp2
pdb|1TH0|B Chain B, Structure Of Human Senp2
Length = 226
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 15/107 (14%)
Query: 1 VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHE 60
+ +PI HW L V+D+ + DSM + + +++ LQ S +
Sbjct: 106 ILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHR---------ICEILLQYLQDESKTK 156
Query: 61 TNPDCSEVISKIPWP--IVRVRDIPQQKSGGDCGAFLLRYLEVLAHE 105
N D ++ + W ++ +IPQQ +G DCG F +Y + ++ +
Sbjct: 157 RNSD----LNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRD 199
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 221
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 1 VYLPIFMN-DHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYH 59
++ PI +N HW LG++D+ I DS+ + N ++ I LQK
Sbjct: 104 IFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPN---------AMSFAILTDLQKYVME 154
Query: 60 ETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFL 95
E+ E I D PQQ +G DCG ++
Sbjct: 155 ESKHTIGEDFDLIHL------DCPQQPNGYDCGIYV 184
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2
pdb|2IO1|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|C Chain C, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|E Chain E, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO2|A Chain A, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
pdb|2IO3|A Chain A, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 232
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Query: 1 VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHE 60
+ +PI HW L V+D+ + DSM + + +++ LQ S +
Sbjct: 112 ILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHR---------ICEILLQYLQDESKTK 162
Query: 61 TNPDCSEVISKIPWP--IVRVRDIPQQKSGGDCGAFLLRYLEVLAHE 105
N D ++ + W ++ +IPQQ +G D G F +Y + ++ +
Sbjct: 163 RNSD----LNLLEWTHHSMKPHEIPQQLNGSDSGMFTCKYADYISRD 205
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain
Length = 323
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 82 IPQQKSGGDCGAFLLRYLEVLAHELDVN 109
+P+Q + DCG +LL+Y+E + VN
Sbjct: 256 VPKQDNSSDCGVYLLQYVESFFKDPIVN 283
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfenic Acid
pdb|2HL8|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfinic Acid
pdb|2HL9|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfonic Acid
Length = 221
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 16/96 (16%)
Query: 1 VYLPIFMN-DHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYH 59
++ PI +N HW LG++D+ I DS+ + N ++ I LQK
Sbjct: 104 IFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPN---------AMSFAILTDLQKYVME 154
Query: 60 ETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFL 95
E+ E I D PQQ +G D G ++
Sbjct: 155 ESKHTIGEDFDLIHL------DCPQQPNGYDXGIYV 184
>pdb|3CX6|B Chain B, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
pdb|3CX7|B Chain B, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|B Chain B, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 203
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 37 VLVRQLLPVADMIPLVLQKIS--YHETNPDCSEVISKIPWPIVRVRDIP 83
V +R +L AD PL+ S Y +TNP S + K W I ++ P
Sbjct: 38 VFLRYILSQADPGPLLFYLCSEVYQQTNPKDSRSLGKDIWNIFLEKNAP 86
>pdb|2CFO|A Chain A, Non-discriminating Glutamyl-trna Synthetase From
Thermosynechococcus Elongatus In Complex With Glu
pdb|2CFO|B Chain B, Non-discriminating Glutamyl-trna Synthetase From
Thermosynechococcus Elongatus In Complex With Glu
Length = 492
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 76 IVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKL 128
I+R+ D +++S + +L L+ L D Y Q D + +RQA+ L
Sbjct: 37 ILRIEDTDRERSRPEYTENILEGLQWLGLTWDEGPYFQSDRLDLYRQAIQTLL 89
>pdb|1B62|A Chain A, Mutl Complexed With Adp
Length = 355
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 79 VRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLF 129
+R + K G D + YLE+ H++DVN + + H +F Q+ V F
Sbjct: 278 IRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAK-HEVRFHQSRLVHDF 327
>pdb|1BKN|A Chain A, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
pdb|1BKN|B Chain B, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
Length = 352
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 79 VRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLF 129
+R + K G D + YLE+ H++DVN + + H +F Q+ V F
Sbjct: 275 IRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAK-HEVRFHQSRLVHDF 324
>pdb|1NHJ|A Chain A, Crystal Structure Of N-Terminal 40kd MutlA100P MUTANT
PROTEIN COMPLEX With Adpnp And One Sodium
Length = 333
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 79 VRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLF 129
+R + K G D + YLE+ H++DVN + + H +F Q+ V F
Sbjct: 274 IRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAK-HEVRFHQSRLVHDF 323
>pdb|1B63|A Chain A, Mutl Complexed With Adpnp
pdb|1NHH|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl Protein (Ln40)
Complex With Adpnp And One Rubidium
pdb|1NHI|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl (Ln40) Complex
With Adpnp And One Potassium
Length = 333
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 79 VRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLF 129
+R + K G D + YLE+ H++DVN + + H +F Q+ V F
Sbjct: 274 IRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAK-HEVRFHQSRLVHDF 323
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,934,339
Number of Sequences: 62578
Number of extensions: 145587
Number of successful extensions: 523
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 20
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)