BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046745
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana
GN=ESD4 PE=1 SV=1
Length = 489
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 1 VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHE 60
+++PI HW L V++ K+ DS L V MI L K E
Sbjct: 371 IFVPIHRGVHWTLAVINNRESKLLYLDS-------------LNGVDPMILNALAKYMGDE 417
Query: 61 TNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYC-QQDHVTQ 119
N + I W + V D+PQQK+G DCG F+L+Y++ + L + C Q+H+
Sbjct: 418 ANEKSGKKIDANSWDMEFVEDLPQQKNGYDCGMFMLKYIDFFSRGLGL---CFSQEHMPY 474
Query: 120 FR 121
FR
Sbjct: 475 FR 476
>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1
Length = 645
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 3 LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
+PI + HW L VVD I+ YDSM + N++ R LL + ++ E +
Sbjct: 527 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFD 581
Query: 63 PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
+ ++ SK + ++IPQQ +G DCG F +Y + + + +N + QQ H+ FR+
Sbjct: 582 TNGWQLFSK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRK 633
Query: 123 ALAVKLFGHR 132
+ ++ HR
Sbjct: 634 RMVWEIL-HR 642
>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2
Length = 644
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 3 LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
+PI + HW L VVD I+ YDSM + N++ R LL + ++ E +
Sbjct: 526 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFD 580
Query: 63 PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
+ ++ SK + ++IPQQ +G DCG F +Y + + + +N + QQ H+ FR+
Sbjct: 581 TNGWQLFSK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRK 632
Query: 123 ALAVKLFGHR 132
+ ++ HR
Sbjct: 633 RMVWEIL-HR 641
>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1
Length = 640
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 18/132 (13%)
Query: 3 LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
+PI + HW L VVD I+ YDSM + N++ + +LQ + +
Sbjct: 522 VPIHLGVHWCLAVVDFRRKSITYYDSMGGINNEACRI------------LLQYLKQESVD 569
Query: 63 PDCSEVISKIPWPIV--RVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQF 120
E + W + + ++IPQQ +G DCG F +Y + + + +N + QQ H+ F
Sbjct: 570 KKRKEFDTN-GWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYF 626
Query: 121 RQALAVKLFGHR 132
R+ + ++ HR
Sbjct: 627 RKRMVWEIL-HR 637
>sp|O65278|ULP1B_ARATH Putative ubiquitin-like-specific protease 1B OS=Arabidopsis
thaliana GN=ULP1B PE=5 SV=2
Length = 341
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 13/115 (11%)
Query: 1 VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHE 60
+++PI ++ HW LGV++ K DS+ ++L + D + QK
Sbjct: 222 IFVPIHIDIHWTLGVINNRERKFVYLDSLFTGVGHTILNAMAKYLVDEVKQKSQK----- 276
Query: 61 TNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQD 115
N D S W + V + PQQ++G DCG F+L+Y++ + L + + Q+D
Sbjct: 277 -NIDVS------SWGMEYVEERPQQQNGYDCGMFMLKYIDFYSRGLSL-QFSQKD 323
>sp|Q8GYL3|ULP1A_ARATH Ubiquitin-like-specific protease 1A OS=Arabidopsis thaliana
GN=ULP1A PE=2 SV=2
Length = 502
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 23/133 (17%)
Query: 1 VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHE 60
+++PI MN HW L V++I K DS P +L ++ +
Sbjct: 384 IFIPIHMNIHWTLAVINIKDQKFQYLDSF----------------KGREPKILDALARYF 427
Query: 61 TNP--DCSEVISKIP-WPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYC-QQDH 116
+ D SEV + W V+D+P Q++G DCG F+++Y++ + LD+ C Q+
Sbjct: 428 VDEVRDKSEVDLDVSRWRQEFVQDLPMQRNGFDCGMFMVKYIDFYSRGLDL---CFTQEQ 484
Query: 117 VTQFRQALAVKLF 129
+ FR A ++
Sbjct: 485 MPYFRARTAKEIL 497
>sp|Q09353|SENP_CAEEL Sentrin-specific protease OS=Caenorhabditis elegans GN=ulp-1 PE=2
SV=3
Length = 697
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 17/102 (16%)
Query: 1 VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVL--VRQLLPVADMIPLVLQKISY 58
V +P+ + HW + V+D+ KI YDS+ D N +VL +R L + +
Sbjct: 576 VLVPVHLGMHWCMAVIDMGEKKIEFYDSLYD-GNTAVLPALRGYLEA--------ESLDK 626
Query: 59 HETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLE 100
+T + S W I ++ DIP+Q++G DCG F ++ E
Sbjct: 627 KKTAMNFSG------WTIQQMTDIPRQQNGSDCGVFSCQFGE 662
>sp|Q8WP32|SENP5_MACFA Sentrin-specific protease 5 OS=Macaca fascicularis GN=SENP5 PE=2
SV=1
Length = 755
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 3 LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
+PI + HW L V + IS YDS + V ++ +L + + +
Sbjct: 639 IPIHLEVHWSLITVTLSNRIISFYDSQ--------GIHFKFCVENIRKYLLTE-AREKNR 689
Query: 63 PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHE 105
P+ + W + IPQQK+ DCG F+L+Y + LA E
Sbjct: 690 PEFLQ-----GWQTAVTKCIPQQKNDSDCGVFVLQYCKCLALE 727
>sp|Q96HI0|SENP5_HUMAN Sentrin-specific protease 5 OS=Homo sapiens GN=SENP5 PE=1 SV=3
Length = 755
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 3 LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
+PI + HW L V + IS YDS + V ++ +L + + +
Sbjct: 639 IPIHLEVHWSLITVTLSNRIISFYDSQ--------GIHFKFCVENIRKYLLTE-AREKNR 689
Query: 63 PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHE 105
P+ + W + IPQQK+ DCG F+L+Y + LA E
Sbjct: 690 PEFLQ-----GWQTAVTKCIPQQKNDSDCGVFVLQYCKCLALE 727
>sp|Q6NXL6|SENP5_MOUSE Sentrin-specific protease 5 OS=Mus musculus GN=Senp5 PE=2 SV=1
Length = 749
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 3 LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
+PI + HW L V + IS YDS + V ++ +L + + +
Sbjct: 633 IPIHLEVHWSLITVTLSSRIISFYDSQ--------GIHFKFCVENIRKYLLTE-AREKNR 683
Query: 63 PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHE 105
P+ + W + IPQQK+ DCG F+L+Y + LA E
Sbjct: 684 PEFLQ-----GWQTAVTKCIPQQKNDSDCGVFVLQYCKCLALE 721
>sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 OS=Homo sapiens GN=SENP2 PE=1 SV=3
Length = 589
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 15/107 (14%)
Query: 1 VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHE 60
+ +PI HW L V+D+ + DSM + + +++ LQ S +
Sbjct: 469 ILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHR---------ICEILLQYLQDESKTK 519
Query: 61 TNPDCSEVISKIPWP--IVRVRDIPQQKSGGDCGAFLLRYLEVLAHE 105
N D ++ + W ++ +IPQQ +G DCG F +Y + ++ +
Sbjct: 520 RNSD----LNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRD 562
>sp|Q9EQE1|SENP2_RAT Sentrin-specific protease 2 OS=Rattus norvegicus GN=Senp2 PE=1 SV=1
Length = 588
Score = 35.8 bits (81), Expect = 0.073, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 15/107 (14%)
Query: 1 VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHE 60
V +PI HW L V+D+ + DSM + + +++ LQ S +
Sbjct: 468 VLVPIHRKVHWSLVVMDLRKKCLKYLDSMGQKGHR---------ICEILLQYLQDESKTK 518
Query: 61 TNPDCSEVISKIPWP--IVRVRDIPQQKSGGDCGAFLLRYLEVLAHE 105
N D ++ + W ++ +IPQQ +G DCG F +Y + ++ +
Sbjct: 519 RNTD----LNLLEWTHYSMKPHEIPQQLNGSDCGMFTCKYADYISRD 561
>sp|Q91ZX6|SENP2_MOUSE Sentrin-specific protease 2 OS=Mus musculus GN=Senp2 PE=1 SV=2
Length = 588
Score = 35.8 bits (81), Expect = 0.073, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 15/107 (14%)
Query: 1 VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHE 60
V +PI HW L V+D+ + DSM + + +++ LQ S +
Sbjct: 468 VLVPIHRKVHWSLVVMDLRKKCLKYLDSMGQKGHR---------ICEILLQYLQDESKTK 518
Query: 61 TNPDCSEVISKIPWP--IVRVRDIPQQKSGGDCGAFLLRYLEVLAHE 105
N D ++ + W ++ +IPQQ +G DCG F +Y + ++ +
Sbjct: 519 RNTD----LNLLEWTHYSMKPHEIPQQLNGSDCGMFTCKYADYISRD 561
>sp|Q5R7K7|SENP2_PONAB Sentrin-specific protease 2 OS=Pongo abelii GN=SENP2 PE=2 SV=1
Length = 589
Score = 35.4 bits (80), Expect = 0.099, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 15/107 (14%)
Query: 1 VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHE 60
+ +PI HW L V+D+ + DSM + + +++ LQ S +
Sbjct: 469 ILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHR---------ICEILLQYLQDESKTK 519
Query: 61 TNPDCSEVISKIPWP--IVRVRDIPQQKSGGDCGAFLLRYLEVLAHE 105
N D ++ + W ++ +IPQQ +G DCG F +Y + ++ +
Sbjct: 520 RNID----LNLLEWTHYSMKPHEIPQQLNGSDCGMFTCKYADYISRD 562
>sp|Q8L7S0|ULP2B_ARATH Probable ubiquitin-like-specific protease 2B OS=Arabidopsis
thaliana GN=ULP2B PE=2 SV=3
Length = 931
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 81 DIPQQKSGGDCGAFLLRYLEVLAHELDVN 109
++PQQ++ DCG FLL YLE+ E +N
Sbjct: 567 ELPQQENSFDCGLFLLHYLELFLAEAPLN 595
>sp|Q02724|ULP1_YEAST Ubiquitin-like-specific protease 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ULP1 PE=1 SV=1
Length = 621
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 1 VYLPIFMN-DHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYH 59
++ PI +N HW LG++D+ I DS+ + N ++ I LQK
Sbjct: 504 IFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPN---------AMSFAILTDLQKYVME 554
Query: 60 ETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFL 95
E+ E I D PQQ +G DCG ++
Sbjct: 555 ESKHTIGEDFDLIHL------DCPQQPNGYDCGIYV 584
>sp|Q9H4L4|SENP3_HUMAN Sentrin-specific protease 3 OS=Homo sapiens GN=SENP3 PE=1 SV=2
Length = 574
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 15/120 (12%)
Query: 3 LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
+PI + HW L VD+ I+ +DS L + + + + ++ +H+
Sbjct: 458 IPIHLEVHWSLISVDVRRRTITYFDSQRTL--NRRCPKHIAKYLQAEAVKKDRLDFHQG- 514
Query: 63 PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
W ++ +Q + DCGAF+L+Y + LA S+ QQD RQ
Sbjct: 515 -----------WKGYFKMNVARQNNDSDCGAFVLQYCKHLALSQPF-SFTQQDMPKLRRQ 562
>sp|Q9EP97|SENP3_MOUSE Sentrin-specific protease 3 OS=Mus musculus GN=Senp3 PE=1 SV=1
Length = 568
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 3 LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
+PI + HW L VD+ I+ +DS L + + + ++ +H+
Sbjct: 452 IPIHLEVHWSLISVDVRRRTITYFDSQRTLNRRCP--KHIAKYLQAEAVKKDRLDFHQG- 508
Query: 63 PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
W ++ +Q + DCGAF+L+Y + LA S+ QQD RQ
Sbjct: 509 -----------WKGYFKMNVARQNNDSDCGAFVLQYCKHLALSQPF-SFTQQDMPKLRRQ 556
>sp|B0BAX8|CDUB2_CHLTB Deubiquitinase and deneddylase Dub2 OS=Chlamydia trachomatis
serovar L2b (strain UCH-1/proctitis) GN=cdu2 PE=3 SV=1
Length = 339
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 8 NDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSE 67
N HWVL +VDI ++ +DS+ D +R+ L + + + L I E D +
Sbjct: 201 NSHWVLVIVDIEYRCVTFFDSLCDYVASPQQMREQL---EGLAVSLGAIYPKEGGADSDQ 257
Query: 68 VISKIPWPI-----VRVRDIPQQKSGGDCGAFLLRYLE 100
P+ + V+V+ + G C FL YLE
Sbjct: 258 EELLSPFQVRIGSTVKVQSPGEFTCGAWCCQFLAWYLE 295
>sp|B0B999|CDUB2_CHLT2 Deubiquitinase and deneddylase Dub2 OS=Chlamydia trachomatis
serovar L2 (strain 434/Bu / ATCC VR-902B) GN=cdu2 PE=3
SV=1
Length = 339
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 8 NDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSE 67
N HWVL +VDI ++ +DS+ D +R+ L + + + L I E D +
Sbjct: 201 NSHWVLVIVDIEYRCVTFFDSLCDYVASPQQMREQL---EGLAVSLGAIYPKEGGADSDQ 257
Query: 68 VISKIPWPI-----VRVRDIPQQKSGGDCGAFLLRYLE 100
P+ + V+V+ + G C FL YLE
Sbjct: 258 EELLSPFQVRIGSTVKVQSPGEFTCGAWCCQFLAWYLE 295
>sp|Q9LSS7|RUBP1_ARATH NEDD8-specific protease 1 OS=Arabidopsis thaliana GN=NEDP1 PE=2
SV=1
Length = 226
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 81 DIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHV 117
D PQQK+G DCG FLL V+ +D +
Sbjct: 156 DTPQQKNGYDCGVFLLATARVICEWFSSGGMKNRDEL 192
>sp|Q0WKV8|ULP2A_ARATH Probable ubiquitin-like-specific protease 2A OS=Arabidopsis
thaliana GN=ULP2A PE=2 SV=2
Length = 774
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 81 DIPQQKSGGDCGAFLLRYLEVLAHE 105
++PQQ++ DCG FLL YL++ +
Sbjct: 475 ELPQQENSFDCGLFLLHYLDLFVAQ 499
>sp|Q9GZR1|SENP6_HUMAN Sentrin-specific protease 6 OS=Homo sapiens GN=SENP6 PE=1 SV=2
Length = 1112
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 6/34 (17%)
Query: 82 IPQQKSGGDCGAFLLRYLE------VLAHELDVN 109
+PQQ + DCG ++L+Y+E +L+ EL +N
Sbjct: 1021 VPQQNNFSDCGVYVLQYVESFFENPILSFELPMN 1054
>sp|D3UTF3|CDUB2_CHLTS Deubiquitinase and deneddylase Dub2 OS=Chlamydia trachomatis
serovar E (strain Sweden2) GN=cdu2 PE=3 SV=1
Length = 339
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 8 NDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSE 67
N HWVL +VDI ++ +DS D +R+ L + + L I E D +
Sbjct: 201 NSHWVLVIVDIEHRCVTFFDSFYDYIASPQQMREQL---EGLAASLGAIYPKEGGADSDQ 257
Query: 68 VISKIPWPI-----VRVRDIPQQKSGGDCGAFLLRYLE 100
P+ + V+V+ + G C FL YLE
Sbjct: 258 EELLSPFQVRIGSTVKVQSPGEFTCGAWCCQFLAWYLE 295
>sp|O84875|CDUB2_CHLTR Deubiquitinase and deneddylase Dub2 OS=Chlamydia trachomatis
(strain D/UW-3/Cx) GN=cdu2 PE=1 SV=1
Length = 339
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 8 NDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSE 67
N HWVL +VDI ++ +DS D +R+ L + + L I E D +
Sbjct: 201 NSHWVLVIVDIEHRCVTFFDSFYDYIASPQQMREQL---EGLAASLGAIYPKEGGADSDQ 257
Query: 68 VISKIPWPI-----VRVRDIPQQKSGGDCGAFLLRYLE 100
P+ + V+V+ + G C FL YLE
Sbjct: 258 EELLSPFQVRIGSTVKVQSPGEFTCGAWCCQFLAWYLE 295
>sp|A4SKA6|DNLJ_AERS4 DNA ligase OS=Aeromonas salmonicida (strain A449) GN=ligA PE=3 SV=1
Length = 664
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 39 VRQLLPVADMIPLVLQKISYHETNPDCSEVISK-IPWPIVRVRDIPQQKSGG 89
V QLL VAD+ +V + + Y P EV++ I WP + ++ +Q G
Sbjct: 542 VEQLLEVADVGDIVAKHVYYFLRQPHNIEVLAAGIHWPAIEKKEASEQPFAG 593
>sp|D3ZF42|SENP7_RAT Sentrin-specific protease 7 OS=Rattus norvegicus GN=Senp7 PE=2 SV=1
Length = 1037
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 82 IPQQKSGGDCGAFLLRYLEVLAHELDVN 109
+P+Q + DCG +LL+Y+E + VN
Sbjct: 970 VPKQDNSSDCGVYLLQYVESFFQDPIVN 997
>sp|Q8BUH8|SENP7_MOUSE Sentrin-specific protease 7 OS=Mus musculus GN=Senp7 PE=2 SV=1
Length = 1037
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 82 IPQQKSGGDCGAFLLRYLEVLAHELDVN 109
+P+Q + DCG +LL+Y+E + VN
Sbjct: 970 VPKQDNSSDCGVYLLQYVESFFQDPIVN 997
>sp|Q2PS26|ULP1D_ARATH Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana
GN=ULP1D PE=1 SV=1
Length = 584
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 1 VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQ------ 54
+++PI + HW L +V I K +++ L DS+ + + + + L+
Sbjct: 429 IFIPIHEDLHWSLVIVCIPDKKDESGLTILHL--DSLGLHSRKSIVENVKRFLKDEWNYL 486
Query: 55 -KISYHETNPDCSEVISKIPWPIVR-VRDIPQQKSGGDCGAFLLRYLEVLAHE 105
+ Y P +V +P I V +PQQK+ DCG F+L +++ E
Sbjct: 487 NQDDYSLDLPISEKVWKNLPRRISEAVVQVPQQKNDFDCGPFVLFFIKRFIEE 539
>sp|Q6P7W0|SENP6_MOUSE Sentrin-specific protease 6 OS=Mus musculus GN=Senp6 PE=1 SV=3
Length = 1132
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 6/34 (17%)
Query: 82 IPQQKSGGDCGAFLLRYLE------VLAHELDVN 109
+PQQ + DCG ++L+Y+E VL EL +N
Sbjct: 1040 VPQQNNFSDCGVYVLQYVESFFENPVLNFELPMN 1073
>sp|Q09275|ULP4_CAEEL Putative thiol protease ulp-4 OS=Caenorhabditis elegans GN=ulp-4
PE=3 SV=2
Length = 382
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 1 VYLPIFMNDHWVLGVV---DILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKIS 57
+ +P+ +HW L V+ + I+DS LT D + L +A +I + K S
Sbjct: 226 IVVPVNEWEHWSLAVICHPFTAQARTVIFDSQ--LTAD---LNNLQNMATLIESFM-KYS 279
Query: 58 YHETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRY 98
Y + + P P + + +PQQ + DCG F+ +
Sbjct: 280 YEKRTGNAM----PFPLPCILPQRMPQQTNNFDCGIFIAEF 316
>sp|Q9BQF6|SENP7_HUMAN Sentrin-specific protease 7 OS=Homo sapiens GN=SENP7 PE=1 SV=4
Length = 1050
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 82 IPQQKSGGDCGAFLLRYLEVLAHELDVN 109
+P+Q + DCG +LL+Y+E + VN
Sbjct: 983 VPKQDNSSDCGVYLLQYVESFFKDPIVN 1010
>sp|A7MBJ2|SENP7_BOVIN Sentrin-specific protease 7 OS=Bos taurus GN=SENP7 PE=2 SV=1
Length = 1047
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 82 IPQQKSGGDCGAFLLRYLEVLAHELDVN 109
+P+Q + DCG +LL+Y+E + VN
Sbjct: 980 VPKQDNSSDCGVYLLQYVESFFKDPIVN 1007
>sp|A8AMN1|MUTL_CITK8 DNA mismatch repair protein MutL OS=Citrobacter koseri (strain ATCC
BAA-895 / CDC 4225-83 / SGSC4696) GN=mutL PE=3 SV=1
Length = 619
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 79 VRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLF 129
+R + K GGD + YLE+ H++DVN + + H +F Q+ V F
Sbjct: 272 IRQACEDKLGGDRQPAFVLYLEIDPHQVDVNVHPAK-HEVRFHQSRLVHDF 321
>sp|C4PQQ9|CDUB2_CHLTJ Deubiquitinase and deneddylase Dub2 OS=Chlamydia trachomatis
serovar B (strain Jali20/OT) GN=cdu2 PE=3 SV=1
Length = 339
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 8 NDHWVLGVVDILGGKISIYDSMID-LTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCS 66
N HWVL +VDI ++ +DS + + + + QL +A + + K ++ D
Sbjct: 201 NSHWVLVIVDIEHRCVTFFDSFYNYIASPQQMREQLEGLAASLGAIYPKEGGSDS--DQE 258
Query: 67 EVISKIPWPI---VRVRDIPQQKSGGDCGAFLLRYLE 100
E++S I V+V+ + G C FL YLE
Sbjct: 259 ELLSPFQVRIGSTVKVQSPGEFTCGAWCCQFLAWYLE 295
>sp|P24773|TRPG_PENCH Anthranilate synthase component 2 OS=Penicillium chrysogenum
GN=trpC PE=4 SV=1
Length = 752
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 15 VVDILGGKISIYDSMI-----DLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVI 69
++ GGK+ + ++ +L +DS V Q LP + + H T PDC EV
Sbjct: 108 MITSFGGKVDVTGEILHGKTSELKHDSKGVYQGLPTSLEVTRYHSLAGTHSTIPDCLEVT 167
Query: 70 SKI 72
S++
Sbjct: 168 SRV 170
>sp|C4PLJ4|CDUB2_CHLTZ Deubiquitinase and deneddylase Dub2 OS=Chlamydia trachomatis
serovar B (strain TZ1A828/OT) GN=cdu2 PE=3 SV=1
Length = 339
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 8 NDHWVLGVVDILGGKISIYDSMID-LTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCS 66
N HWVL +VDI ++ +DS + + + + QL +A + + K ++ D
Sbjct: 201 NSHWVLVIVDIEHRCVTFFDSFYNYIASPQQMREQLEGLAASLGAIYPKEGGADS--DQE 258
Query: 67 EVISKIPWPI---VRVRDIPQQKSGGDCGAFLLRYLE 100
E++S I V+V+ + G C FL YLE
Sbjct: 259 ELLSPFQVRIGSTVKVQSPGEFTCGAWCCQFLAWYLE 295
>sp|Q3KKG9|CDUB2_CHLTA Deubiquitinase and deneddylase Dub2 OS=Chlamydia trachomatis
serovar A (strain HAR-13 / ATCC VR-571B) GN=cdu2 PE=3
SV=1
Length = 339
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 8 NDHWVLGVVDILGGKISIYDSMID-LTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCS 66
N HWVL +VDI ++ +DS + + + + QL +A + + K ++ D
Sbjct: 201 NSHWVLVIVDIEHRCVTFFDSFYNYIASPQQMREQLEGLAASLGAIYPKEGGADS--DQE 258
Query: 67 EVISKIPWPI---VRVRDIPQQKSGGDCGAFLLRYLE 100
E++S I V+V+ + G C FL YLE
Sbjct: 259 ELLSPFQVRIGSTVKVQSPGEFTCGAWCCQFLAWYLE 295
>sp|Q3KKG8|CDUB1_CHLTA Deubiquitinase and deneddylase Dub1 OS=Chlamydia trachomatis
serovar A (strain HAR-13 / ATCC VR-571B) GN=cdu1 PE=3
SV=1
Length = 418
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 33/102 (32%)
Query: 9 DHWVLGVVDILGGKISIYDSMI-----------DLTNDSVLVRQLLPVADMIPLVLQKIS 57
HW+L +VDI ++ +DS+ DL + + + Q+ P D QK S
Sbjct: 287 SHWLLVIVDIQARRLVYFDSLYNYVMSPEDMKKDLQSFAQQLDQVYPACDS-----QKFS 341
Query: 58 YHETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYL 99
+ +++ Q+ SG CGA+ ++L
Sbjct: 342 VK-----------------IAAKEVIQKGSGSSCGAWCCQFL 366
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.142 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,384,436
Number of Sequences: 539616
Number of extensions: 1944294
Number of successful extensions: 5320
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 5278
Number of HSP's gapped (non-prelim): 44
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)