BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046746
(561 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 155/557 (27%), Positives = 255/557 (45%), Gaps = 57/557 (10%)
Query: 31 FTWNVTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLD-EPFLLTWPGIQ 89
+ W V Y +P + INGQFPGP I + D++V+ + NKL E ++ W GI
Sbjct: 6 YKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGIL 65
Query: 90 HKKNSWQDGVLG-TNCPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSR 148
+ W DG + C I PG+ + Y V D G++ YH G R+AG +G L +
Sbjct: 66 QRGTPWADGTASISQCAINPGETFFYNFTV-DNPGTFFYHGHLGMQRSAGLYGSLIVDPP 124
Query: 149 SVVPVPYNRFVEDDFTLLIGDWYTRS--HVELGKQLDSGKLLGKPDGVLINGKSGRLDYD 206
P++ + + LL+ DW+ +S E+G + +G+P +L+NG+ G+ D
Sbjct: 125 QGKKEPFH--YDGEINLLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGR-GQFDCS 181
Query: 207 SDGKGDN--EP------------LFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEM 252
K D+ EP +F + K Y+ RI + +LNF I H + +VE
Sbjct: 182 IAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQLLVVEA 241
Query: 253 EGSHVVQNEYESLDVHVGQCFTVLVTANQDPKDYYLI-----ASXXXXXXXXXXXXXXXY 307
+G++V +D++ G+ ++VL+T +Q+P + Y + A
Sbjct: 242 DGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTRARHPNTPPGLTLLNYLPN 301
Query: 308 SDSKGLASPDLPKAPVGWDWSLNQFRSFRWNLTASAARPNPQGSFHYGGIPINRTIRLAN 367
S SK SP P+ P WD ++ ++F + +TA+ P P F NR I L N
Sbjct: 302 SVSKLPTSPP-PQTP-AWD-DFDRSKNFTYRITAAMGSPKPPVKF-------NRRIFLLN 351
Query: 368 TAHLVNGKVRFAVNGVSYVNSETPLKFAEYYGI--------PEEVFKYNVISDKPADEIE 419
T +++NG V++A+N VS TP A Y + P EVF + D P E
Sbjct: 352 TQNVINGYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDIDTPPTN-E 410
Query: 420 NVTLQPNVMDATYKAFMEIVLEN----RQNTMQS--WILDGYAFFAVGMEPGTWNPDKRK 473
+ V ++++L+N ++N ++ W L G+ F+ +G G ++ ++
Sbjct: 411 KTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSAEEES 470
Query: 474 SYNLIDAVSRYTIQVFPNCWAAILVSMDNAGMWNLRSNIWERNYLGQQLYLSVRLHKRSL 533
S NL + R T+ +FP W AI DN G+W +I ++G + + + K
Sbjct: 471 SLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVEKVG- 529
Query: 534 RDEYNMPDNALLCGIVA 550
+P AL CG A
Sbjct: 530 ----RIPTKALACGGTA 542
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 122/265 (46%), Gaps = 18/265 (6%)
Query: 32 TWNVTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLT-----WP 86
T +T +SP G + GIL+NG GP I NDN +NV N LD P +L W
Sbjct: 8 TMTLTNANVSPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWH 66
Query: 87 GIQHKKNSWQDGVLGTN-CPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCI 145
G+ + +W DG G N CPI PG + Y G++ YH G G G + I
Sbjct: 67 GLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVI 126
Query: 146 HSRSVVPVPYNRFVEDDFTLLIGDWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDY 205
+ + +++ + + DWY H+ S + +PD LINGK GR
Sbjct: 127 YDDNDPHAALYDEDDENTIITLADWY---HIPA----PSIQGAAQPDATLINGK-GRY-- 176
Query: 206 DSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESL 265
G + ++ GK Y+ R+ ++ + F I GH + ++E++G + + L
Sbjct: 177 -VGGPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRL 235
Query: 266 DVHVGQCFTVLVTANQDPKDYYLIA 290
+ GQ ++ ++ ANQ +Y++ A
Sbjct: 236 QIFTGQRYSFVLDANQPVDNYWIRA 260
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 122/265 (46%), Gaps = 18/265 (6%)
Query: 32 TWNVTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLT-----WP 86
T +T +SP G + GIL+NG GP I NDN +NV N LD P +L W
Sbjct: 8 TMTLTNANVSPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWH 66
Query: 87 GIQHKKNSWQDGVLGTN-CPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCI 145
G+ + +W DG G N CPI PG + Y G++ YH G G G + I
Sbjct: 67 GLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVI 126
Query: 146 HSRSVVPVPYNRFVEDDFTLLIGDWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDY 205
+ + +++ + + DWY H+ S + +PD LINGK GR
Sbjct: 127 YDDNDPHAALYDEDDENTIITLADWY---HIPA----PSIQGAAQPDATLINGK-GRY-- 176
Query: 206 DSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESL 265
G + ++ GK Y+ R+ ++ + F I GH + ++E++G + + L
Sbjct: 177 -VGGPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRL 235
Query: 266 DVHVGQCFTVLVTANQDPKDYYLIA 290
+ GQ ++ ++ ANQ +Y++ A
Sbjct: 236 QIFTGQRYSFVLDANQPVDNYWIRA 260
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 134/554 (24%), Positives = 212/554 (38%), Gaps = 81/554 (14%)
Query: 34 NVTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFL-LTWPGIQHKK 92
+V TI+P G + + NG PGP I + DNL+I+V N L+ + W GI+
Sbjct: 73 SVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLG 132
Query: 93 NSWQDGVLG-TNCPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVV 151
+ DGV G T CPI PG TY QV Q G+ YH G FG L I+ +
Sbjct: 133 SLEYDGVPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLIINGPATA 191
Query: 152 PVPYNRFVEDDFTLLIGDWYTRSHVELGKQLDSGKLLGKP--DGVLINGK-----SGRLD 204
+ ED + + DW S E+ D+ +L P + L+NG S D
Sbjct: 192 -----DYDEDVGVIFLQDWAHESVFEI---WDTARLGAPPALENTLMNGTNTFDCSASTD 243
Query: 205 YDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYES 264
+ G G L T G Y+ R+ NVG+ + F I HT+ ++ + +V ++
Sbjct: 244 PNCVGGGKKFEL-TFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTDT 302
Query: 265 LDVHVGQCFTVLVTANQDPKDYYLIASXXXXXXXXXXXXXXXYSDSKGLASPDLPKAPVG 324
L + +GQ + V+V AN +Y++ + +++ G+ D
Sbjct: 303 LLIGIGQRYDVIVEANAAADNYWIRGNWGTTCSTNNEA-----ANATGILRYD------- 350
Query: 325 WDWSLNQFRSFRWNLTASAARPNPQGSFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVS 384
++S A P G+ G T A LV + V G S
Sbjct: 351 ---------------SSSIANPTSVGTTPRG------TCEDEPVASLV-PHLALDVGGYS 388
Query: 385 YVNSETPLKFAEYYGIPEEVFKYNVISDKPADEIENVTLQPNVMDATYKAFMEIVLENRQ 444
V+ + F Y+ + P TL+ + + +V +
Sbjct: 389 LVDEQVSSAFTNYFTWTINSSSLLLDWSSP------TTLKIFNNETIFPTEYNVVALEQT 442
Query: 445 NTMQSWI------LDGYA-----------FFAVGMEPGTWNPDKRKS-YNLIDAVSRYTI 486
N + W+ L G+ FF V E +N D+ + +NL++ R
Sbjct: 443 NANEEWVVYVIEDLTGFGIWHPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVA 502
Query: 487 QVFPNCWAAILVSMDNAGMWNLRSNIWERNYLGQQLYLSVRLHKRSLRDEYNMPDNALLC 546
+ N + AI +DN G W L +I G L+++ + M D A+
Sbjct: 503 ALPGNGYLAIAFKLDNPGSWLLHCHIAWHASEG----LAMQFVESQSSIAVKMTDTAIFE 558
Query: 547 GIVANMSKPTPYSL 560
AN + TP L
Sbjct: 559 DTCANWNAYTPTQL 572
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 133/554 (24%), Positives = 211/554 (38%), Gaps = 81/554 (14%)
Query: 34 NVTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFL-LTWPGIQHKK 92
+V TI+P G + + NG PGP I + DNL+I+V N L+ + W GI+
Sbjct: 73 SVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLG 132
Query: 93 NSWQDGVLG-TNCPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVV 151
+ DGV G T CPI PG TY QV Q G+ YH G FG L I+ +
Sbjct: 133 SLEYDGVPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLIINGPATA 191
Query: 152 PVPYNRFVEDDFTLLIGDWYTRSHVELGKQLDSGKLLGKP--DGVLINGK-----SGRLD 204
+ ED + + DW S E+ D+ +L P + L+NG S D
Sbjct: 192 -----DYDEDVGVIFLQDWAHESVFEI---WDTARLGAPPALENTLMNGTNTFDCSASTD 243
Query: 205 YDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYES 264
+ G G L T G Y+ R+ NVG+ + F I HT+ ++ + +V ++
Sbjct: 244 PNCVGGGKKFEL-TFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTDT 302
Query: 265 LDVHVGQCFTVLVTANQDPKDYYLIASXXXXXXXXXXXXXXXYSDSKGLASPDLPKAPVG 324
L + +GQ + V+V AN +Y++ + +++ G+ D
Sbjct: 303 LLIGIGQRYDVIVEANAAADNYWIRGNWGTTCSTNNEA-----ANATGILRYD------- 350
Query: 325 WDWSLNQFRSFRWNLTASAARPNPQGSFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVS 384
++S A P G+ G T A LV + V G S
Sbjct: 351 ---------------SSSIANPTSVGTTPRG------TCEDEPVASLV-PHLALDVGGYS 388
Query: 385 YVNSETPLKFAEYYGIPEEVFKYNVISDKPADEIENVTLQPNVMDATYKAFMEIVLENRQ 444
V+ + F Y+ + P TL+ + + +V +
Sbjct: 389 LVDEQVSSAFTNYFTWTINSSSLLLDWSSP------TTLKIFNNETIFPTEYNVVALEQT 442
Query: 445 NTMQSWI------LDGYA-----------FFAVGMEPGTWNPDKRKS-YNLIDAVSRYTI 486
N + W+ L G+ FF V E +N D+ + +NL++ R
Sbjct: 443 NANEEWVVYVIEDLTGFGIWHPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVA 502
Query: 487 QVFPNCWAAILVSMDNAGMWNLRSNIWERNYLGQQLYLSVRLHKRSLRDEYNMPDNALLC 546
+ N + AI +DN G W L +I G + +++ M D A+
Sbjct: 503 ALPGNGYLAIAFKLDNPGSWLLHCHIAWHASEGMAMQFVESQSSIAVK----MTDTAIFE 558
Query: 547 GIVANMSKPTPYSL 560
AN + TP L
Sbjct: 559 DTCANWNAYTPTQL 572
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 124/265 (46%), Gaps = 22/265 (8%)
Query: 35 VTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLT-----WPGIQ 89
++ ++P G + ++ NG FPGP I DN INV + L +L W G+
Sbjct: 10 ISNADVTPDGFTRAAVVANGVFPGPLITGNKGDNFQINVIDNLTNATMLKTTTIHWHGLF 69
Query: 90 HKKNSWQDGVLGTN-CPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSR 148
+W DG N CPI G ++ Y V DQ G++ YH G G L ++
Sbjct: 70 QHGTNWADGPAFVNQCPIASGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLVVYDP 129
Query: 149 SVVPVPYNRF--VEDDFTLL-IGDWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDY 205
S PY V+DD T++ + DWY + +LG D VLING GR
Sbjct: 130 SD---PYASMYDVDDDTTVITLSDWY-HTAAKLGPAFPPNA-----DSVLINGL-GRF-- 177
Query: 206 DSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESL 265
+ G + + T++ K Y++R+ ++ + F I GH M ++E++G + E +S+
Sbjct: 178 -AGGNASDLAVITVEQNKRYRFRLVSLSCDPNFTFSIDGHNMTIIEVDGVNHEPLEVDSI 236
Query: 266 DVHVGQCFTVLVTANQDPKDYYLIA 290
+ Q ++ ++ A Q +Y++ A
Sbjct: 237 QIFASQRYSFVLNATQSVDNYWIRA 261
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 120/263 (45%), Gaps = 16/263 (6%)
Query: 35 VTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLT-----WPGIQ 89
+T +SP G +Q +++NG PGP + D +NV + L +L W G
Sbjct: 10 ITDAAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFF 69
Query: 90 HKKNSWQDGVLGTN-CPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSR 148
+W DG N CPI PG ++ Y QV DQ G++ YH G G ++
Sbjct: 70 QHGTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDP 129
Query: 149 SVVPVPYNRFVEDDFTLLIGDWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDYDSD 208
+ DD + + DWY + +LG + G D LINGK GR DS
Sbjct: 130 NDPHASRYDVDNDDTVITLADWY-HTAAKLGPRFPGGA-----DATLINGK-GRAPSDSV 182
Query: 209 GKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVH 268
+ + + GK Y++R+ ++ + F I GH + ++E++ + E +S+ +
Sbjct: 183 AE---LSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIF 239
Query: 269 VGQCFTVLVTANQDPKDYYLIAS 291
Q ++ ++ ANQ +Y++ A+
Sbjct: 240 AAQRYSFVLDANQAVDNYWIRAN 262
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 120/263 (45%), Gaps = 16/263 (6%)
Query: 35 VTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLT-----WPGIQ 89
+T +SP G +Q +++NG PGP + D +NV + L +L W G
Sbjct: 10 ITDAAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFF 69
Query: 90 HKKNSWQDGVLGTN-CPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSR 148
+W DG N CPI PG ++ Y QV DQ G++ YH G G ++
Sbjct: 70 QHGTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDP 129
Query: 149 SVVPVPYNRFVEDDFTLLIGDWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDYDSD 208
+ DD + + DWY + +LG + G D LINGK GR DS
Sbjct: 130 NDPHASRYDVDNDDTVITLADWY-HTAAKLGPRFPGGA-----DATLINGK-GRAPSDSV 182
Query: 209 GKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVH 268
+ + + GK Y++R+ ++ + F I GH + ++E++ + E +S+ +
Sbjct: 183 AE---LSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIF 239
Query: 269 VGQCFTVLVTANQDPKDYYLIAS 291
Q ++ ++ ANQ +Y++ A+
Sbjct: 240 AAQRYSFVLDANQAVDNYWIRAN 262
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 120/263 (45%), Gaps = 16/263 (6%)
Query: 35 VTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLT-----WPGIQ 89
+T SP G +Q +++NG PGP + D +NV + L +L W G
Sbjct: 10 ITDAATSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFF 69
Query: 90 HKKNSWQDGVLGTN-CPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSR 148
+ +W DG N CPI PG ++ Y QV +Q G++ YH G G ++
Sbjct: 70 QQGTNWADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDP 129
Query: 149 SVVPVPYNRFVEDDFTLLIGDWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDYDSD 208
+ DD + + DWY + +LG + +G D LINGK GR D+
Sbjct: 130 NDPHASRYDVDNDDTVITLADWY-HTAAKLGPRFPAGA-----DATLINGK-GRAPSDTS 182
Query: 209 GKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVH 268
+ + + GK ++R+ ++ + F I GH + ++E++ S+ +S+ +
Sbjct: 183 AE---LSVIKVTKGKRXRFRLVSLSCDPNFTFSIDGHNLTIIEVDSSNSQPLSVDSIQIF 239
Query: 269 VGQCFTVLVTANQDPKDYYLIAS 291
Q ++ ++ ANQ +Y++ A+
Sbjct: 240 AAQRYSFVLNANQAVDNYWIRAN 262
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 117/263 (44%), Gaps = 16/263 (6%)
Query: 35 VTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLT-----WPGIQ 89
+T +SP G +Q +++NG PGP I D +NV + L +L W G
Sbjct: 10 ITNAAVSPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFF 69
Query: 90 HKKNSWQDGVLGTN-CPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSR 148
K +W DG N CPI G ++ Y QV DQ G++ YH G G ++
Sbjct: 70 QKGTNWADGPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDP 129
Query: 149 SVVPVPYNRFVEDDFTLLIGDWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDYDSD 208
+ DD + + DWY + +L LG D LINGK GR +
Sbjct: 130 NDPAADLYDVDNDDTVITLVDWY-----HVAAKLGPAFPLGA-DATLINGK-GRSPSTTT 182
Query: 209 GKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVH 268
+ + ++ GK Y++R+ ++ + F I GH M ++E + + +S+ +
Sbjct: 183 A---DLSVISVTPGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDSIQIF 239
Query: 269 VGQCFTVLVTANQDPKDYYLIAS 291
Q ++ ++ ANQ +Y++ A+
Sbjct: 240 AAQRYSFVLEANQAVDNYWIRAN 262
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 123/265 (46%), Gaps = 23/265 (8%)
Query: 35 VTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLT-----WPGIQ 89
++ G +SP G +Q IL+N FP P I D +NV + + +L W G
Sbjct: 10 ISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFF 69
Query: 90 HKKNSWQDGVLGTN-CPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSR 148
+W DG N CPI G + Y QV DQ G++ YH G G + ++
Sbjct: 70 QHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDP 129
Query: 149 SVVPVPYNRF--VEDDFTLL-IGDWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDY 205
+ P+ V+DD T++ + DWY L ++ G + D LING L
Sbjct: 130 ND---PHASLYDVDDDSTVITLADWY-----HLAAKV--GAPVPTADATLING----LGR 175
Query: 206 DSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESL 265
+ + + T+ GK Y++R+ ++ + F I GH++ ++E + ++ + +SL
Sbjct: 176 SAATLAADLAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSL 235
Query: 266 DVHVGQCFTVLVTANQDPKDYYLIA 290
+ Q ++ ++ A+QD +Y++ A
Sbjct: 236 QIFAAQRYSFVLNADQDVDNYWIRA 260
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 123/265 (46%), Gaps = 23/265 (8%)
Query: 35 VTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLT-----WPGIQ 89
++ G +SP G +Q IL+N FP P I D +NV + + +L W G
Sbjct: 10 ISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFF 69
Query: 90 HKKNSWQDGVLGTN-CPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSR 148
+W DG N CPI G + Y QV DQ G++ YH G G + ++
Sbjct: 70 QHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDP 129
Query: 149 SVVPVPYNRF--VEDDFTLL-IGDWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDY 205
+ P+ V+DD T++ + DWY L ++ G + D LING L
Sbjct: 130 ND---PHASLYDVDDDSTVITLADWY-----HLAAKV--GAPVPTADATLING----LGR 175
Query: 206 DSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESL 265
+ + + T+ GK Y++R+ ++ + F I GH++ ++E + ++ + +SL
Sbjct: 176 SAATLAADLAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSL 235
Query: 266 DVHVGQCFTVLVTANQDPKDYYLIA 290
+ Q ++ ++ A+QD +Y++ A
Sbjct: 236 QIFAAQRYSFVLNADQDVDNYWIRA 260
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 117/263 (44%), Gaps = 16/263 (6%)
Query: 35 VTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLT-----WPGIQ 89
+T SP G +Q +++NG PGP + D +NV + L +L W G
Sbjct: 10 ITNAATSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFF 69
Query: 90 HKKNSWQDGVLGTN-CPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSR 148
+ +W DG N CPI PG ++ Y QV +Q G++ YH G G ++
Sbjct: 70 QQGTNWADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDP 129
Query: 149 SVVPVPYNRFVEDDFTLLIGDWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDYDSD 208
+ DD T+ + DWY + +LG +G D LINGK GR DS
Sbjct: 130 NDPHASRYDVDNDDTTITLADWY-HTAAKLGPAFPNGA-----DSTLINGK-GRAPSDSS 182
Query: 209 GKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVH 268
+ + ++ GK ++R+ ++ + F I GH ++E + + +S+ +
Sbjct: 183 AQ---LSVVSVTKGKRXRFRLVSLSCDPNFTFSIDGHNNTIIETDSVNSQPLNTDSIQIF 239
Query: 269 VGQCFTVLVTANQDPKDYYLIAS 291
Q ++ + ANQ +Y++ A+
Sbjct: 240 AAQRYSFTLNANQAVDNYWIRAN 262
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 121/265 (45%), Gaps = 23/265 (8%)
Query: 35 VTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLT-----WPGIQ 89
++ G +SP G +Q IL+N FP P I D +NV + + +L W G
Sbjct: 10 ISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFF 69
Query: 90 HKKNSWQDGVLGTN-CPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSR 148
+W DG N CPI G + Y QV DQ G++ YH G G + ++
Sbjct: 70 QHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDP 129
Query: 149 SVVPVPYNRF--VEDDFTLL-IGDWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDY 205
P+ V+DD T++ + DWY L ++ G + D LING L
Sbjct: 130 QD---PHKSLYDVDDDSTVITLADWY-----HLAAKV--GSPVPTADATLING----LGR 175
Query: 206 DSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESL 265
D + + T+ GK Y++R+ ++ + F I GH++ ++E + ++ +S+
Sbjct: 176 SIDTLNADLAVITVTKGKRYRFRLVSLSCDPNHVFSIDGHSLTVIEADSVNLKPQTVDSI 235
Query: 266 DVHVGQCFTVLVTANQDPKDYYLIA 290
+ Q ++ ++ A+QD +Y++ A
Sbjct: 236 QIFAAQRYSFVLNADQDVGNYWIRA 260
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 22/266 (8%)
Query: 35 VTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLT-----WPGIQ 89
VT I P G + I++N FP P I DN +N+ N++ +L W G
Sbjct: 10 VTNANIVPDGFERAAIVVNNVFPAPLITGNMGDNFQLNLVNQMTNHTMLKTTSIHWHGFF 69
Query: 90 HKKNSWQDGVLGTN-CPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSR 148
K +W DG N CPI G ++ Y QV Q G++ YH G G ++
Sbjct: 70 QKGTNWADGPAFINQCPIASGNSFLYDFQVPGQAGTFWYHSHLSTQYCDGLRGPFVVYDP 129
Query: 149 SVVPVPYNRF--VEDDFTLL-IGDWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDY 205
+ P+ V+D+ T++ + DWY + +LG + G D LING L
Sbjct: 130 ND---PHANLYDVDDESTVITLADWYHVA-AKLGPRFPKGA-----DSTLING----LGR 176
Query: 206 DSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESL 265
+ + + ++ GK Y++R+ ++ + F I H + ++E +G +S+
Sbjct: 177 STSTPTADLAVISVTKGKRYRFRLVSLSCDPNYTFSIDSHQLTVIEADGVSTQPVTVDSI 236
Query: 266 DVHVGQCFTVLVTANQDPKDYYLIAS 291
+ Q ++ ++ ANQD +Y++ A+
Sbjct: 237 QIFAAQRYSFVLNANQDVDNYWIRAN 262
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 116/263 (44%), Gaps = 16/263 (6%)
Query: 35 VTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLT-----WPGIQ 89
+T +SP G ++ +++NG P P I D +NV ++L +L W G
Sbjct: 10 LTNAQVSPDGFAREAVVVNGITPAPLITGNKGDRFQLNVIDQLTNHTMLKTSSIHWHGFF 69
Query: 90 HKKNSWQDGVLGTN-CPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSR 148
+ +W DG N CPI G ++ Y QV DQ G++ YH G G ++
Sbjct: 70 QQGTNWADGPAFVNQCPIASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDP 129
Query: 149 SVVPVPYNRFVEDDFTLLIGDWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDYDSD 208
+ DD + + DWY + +LG + G D LING L +
Sbjct: 130 NDPHASLYDIDNDDTVITLADWYHVA-AKLGPRFPFGS-----DSTLING----LGRTTG 179
Query: 209 GKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVH 268
+ + + GK Y++R+ ++ + F I HTM ++E + + E +S+ +
Sbjct: 180 IAPSDLAVIKVTQGKRYRFRLVSLSCDPNHTFSIDNHTMTIIEADSINTQPLEVDSIQIF 239
Query: 269 VGQCFTVLVTANQDPKDYYLIAS 291
Q ++ ++ A+Q +Y++ A+
Sbjct: 240 AAQRYSFVLDASQPVDNYWIRAN 262
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 120/261 (45%), Gaps = 20/261 (7%)
Query: 40 ISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLT-----WPGIQHKKNS 94
I P G + + G FPGP I DN I FN+L E +L W G K +
Sbjct: 16 IVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTN 75
Query: 95 WQDG-VLGTNCPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPV 153
W DG T CPI G +++Y V G+Y YH G G ++ + P
Sbjct: 76 WADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPND-PD 134
Query: 154 PYNRFVEDDFTLL-IGDWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDYDSDGKGD 212
V+DD T++ + DWY HV L K++ +G + D LI+G GR +
Sbjct: 135 ANLYDVDDDTTIITLADWY---HV-LAKEMGAGGAI-TADSTLIDGL-GRTHVNVAAV-- 186
Query: 213 NEPL--FTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVG 270
PL T++ GK Y+ R+ ++ + +F I GH M ++E +G + + + +
Sbjct: 187 --PLSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAA 244
Query: 271 QCFTVLVTANQDPKDYYLIAS 291
Q ++ ++ ANQ +Y++ A+
Sbjct: 245 QRYSFVLNANQPVGNYWIRAN 265
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 116/264 (43%), Gaps = 18/264 (6%)
Query: 35 VTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLT-----WPGIQ 89
V +SP G + I++NG FP P I D +NV + L +L W G
Sbjct: 10 VANAPVSPDGFLRDAIVVNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFF 69
Query: 90 HKKNSWQDGVLGTN-CPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSR 148
+W DG N CPI G ++ Y V DQ G++ YH G G ++
Sbjct: 70 QAGTNWADGPAFVNQCPIASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDP 129
Query: 149 SVVPVPYNRFVEDDFTLL-IGDWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDYDS 207
P V+++ T++ + DWY + LG + G D LING L +
Sbjct: 130 KD-PHASRYDVDNESTVITLTDWY-HTAARLGPRFPLGA-----DATLING----LGRSA 178
Query: 208 DGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDV 267
+ ++ GK Y++R+ ++ + F I GH + ++E++G + +S+ +
Sbjct: 179 STPTAALAVINVQHGKRYRFRLVSISCDPNYTFSIDGHNLTVIEVDGINSQPLLVDSIQI 238
Query: 268 HVGQCFTVLVTANQDPKDYYLIAS 291
Q ++ ++ ANQ +Y++ A+
Sbjct: 239 FAAQRYSFVLNANQTVGNYWIRAN 262
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 113/269 (42%), Gaps = 30/269 (11%)
Query: 35 VTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLT-----WPGIQ 89
VT ++ G + +++NG PGP I D +NV N L +L W G
Sbjct: 10 VTNAAVAADGHSRDAVVVNGGTPGPLITGNKGDQFQLNVINNLTNFTMLKSTSVHWHGFF 69
Query: 90 HKKNSWQDGVLGTN-CPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSR 148
K +W DG N CPI G ++ Y Q G++ YH G G ++
Sbjct: 70 QKGTNWADGPAFVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLSTQYCDGDRGPFVVYDP 129
Query: 149 SVVPVPYNRFVEDDFTLLIG--DWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDYD 206
+ N + D+ +I DWY Q K G D LING+
Sbjct: 130 NDPSA--NLYDVDNLNTVITLTDWY-----HTAAQNGPAKP-GGADATLINGQ------- 174
Query: 207 SDGKGDNEP-----LFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNE 261
G+G + P + ++ AGK Y++R+ + + F I GH M +++++ +V
Sbjct: 175 --GRGPSSPSADLAVISVTAGKRYRFRLVSNSCDPNYTFSIDGHQMTIIQVDSINVQPLV 232
Query: 262 YESLDVHVGQCFTVLVTANQDPKDYYLIA 290
+ ++ Q ++ ++ ANQ +Y++ A
Sbjct: 233 VLKIQIYAAQRYSFILNANQAVNNYWIRA 261
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/385 (21%), Positives = 148/385 (38%), Gaps = 24/385 (6%)
Query: 47 QQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFL-----LTWPGIQHKKNSWQDGVLG 101
+ + G P I +D INV ++L + + + W G + DG
Sbjct: 43 RSAVTAEGTTIAPLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAF 102
Query: 102 TN-CPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPVPYNRFVE 160
N CPI P +++ Y V Q G+Y YH G G ++ + + +
Sbjct: 103 VNQCPIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPNDPHLSLYDVDD 162
Query: 161 DDFTLLIGDWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDYDSDGKGDNEPLFTMK 220
+ I DWY L + PD LING S G+ + +++
Sbjct: 163 ASTVITIADWYHSLSTVLFPNPNKAPP--APDTTLINGLGRNSANPSAGQ---LAVVSVQ 217
Query: 221 AGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTAN 280
+GK Y++RI + + F I GH M ++E++G +SL + GQ ++V+V AN
Sbjct: 218 SGKRYRFRIVSTSCFPNYAFSIDGHRMTVIEVDGVSHQPLTVDSLTIFAGQRYSVVVEAN 277
Query: 281 QDPKDYYLIASXXXXXXXXXXXXXXXYSDSKGLASPDLPKAPVGWDWSLNQFRSFRWNLT 340
Q +Y++ A+ +G A + P +LN+
Sbjct: 278 QAVGNYWIRANPSNGRNGFTGGINSAIFRYQGAAVAE-PTTSQNSGTALNEANLIPLINP 336
Query: 341 ASAARPNPQGSFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEYYGI 400
+ P P GG IN +R+ A + F +NG ++ P+ G+
Sbjct: 337 GAPGNPVP------GGADINLNLRIGRNATTAD----FTINGAPFIPPTVPVLLQILSGV 386
Query: 401 --PEEVFKYNVISDKPADEIENVTL 423
P ++ + PA+++ +++
Sbjct: 387 TNPNDLLPGGAVISLPANQVIEISI 411
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 109/252 (43%), Gaps = 13/252 (5%)
Query: 40 ISPLGIPQQGI-LINGQFPGPNINSTTNDNLVINVFNKL-DEPFLLTWPGIQHKKNSWQD 97
+ P G+ ++ + LING GPNI + D + + V N L + W GI K + D
Sbjct: 47 MGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHD 106
Query: 98 GVLG-TNCPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPVPYN 156
G G T CPIPP Y Q G+ YH G G + I+ + +P
Sbjct: 107 GANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPASLP---- 162
Query: 157 RFVEDDFTLLIGDWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDYDSDGKGDNEPL 216
+ D I D+Y R+ +L D VLING + + +G+ N
Sbjct: 163 -YDIDLGVFPITDYYYRAADDL-VHFTQNNAPPFSDNVLINGTAVNPNT-GEGQYAN--- 216
Query: 217 FTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVL 276
T+ GK ++ RI N + + HTM ++ + V +SL + VGQ + V+
Sbjct: 217 VTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVV 276
Query: 277 VTANQDPKDYYL 288
+ A++ P +Y+
Sbjct: 277 IDASRAPDNYWF 288
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 109/252 (43%), Gaps = 13/252 (5%)
Query: 40 ISPLGIPQQGI-LINGQFPGPNINSTTNDNLVINVFNKL-DEPFLLTWPGIQHKKNSWQD 97
+ P G+ ++ + LING GPNI + D + + V N L + W GI K + D
Sbjct: 47 MGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHD 106
Query: 98 GVLG-TNCPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPVPYN 156
G G T CPIPP Y Q G+ YH G G + I+ + +P
Sbjct: 107 GANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPASLP---- 162
Query: 157 RFVEDDFTLLIGDWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDYDSDGKGDNEPL 216
+ D I D+Y R+ +L D VLING + + +G+ N
Sbjct: 163 -YDIDLGVFPITDYYYRAADDL-VHFTQNNAPPFSDNVLINGTAVNPNT-GEGQYAN--- 216
Query: 217 FTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVL 276
T+ GK ++ RI N + + HTM ++ + V +SL + VGQ + V+
Sbjct: 217 VTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVV 276
Query: 277 VTANQDPKDYYL 288
+ A++ P +Y+
Sbjct: 277 IDASRAPDNYWF 288
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 109/252 (43%), Gaps = 13/252 (5%)
Query: 40 ISPLGIPQQGI-LINGQFPGPNINSTTNDNLVINVFNKL-DEPFLLTWPGIQHKKNSWQD 97
+ P G+ ++ + LING GPNI + D + + V N L + W GI K + D
Sbjct: 47 MGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHD 106
Query: 98 GVLG-TNCPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPVPYN 156
G G T CPIPP Y Q G+ YH G G + I+ + +P
Sbjct: 107 GANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPASLP---- 162
Query: 157 RFVEDDFTLLIGDWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDYDSDGKGDNEPL 216
+ D I D+Y R+ +L D VLING + + +G+ N
Sbjct: 163 -YDIDLGVFPITDYYYRAADDL-VHFTQNNAPPFSDNVLINGTAVNPNT-GEGQYAN--- 216
Query: 217 FTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVL 276
T+ GK ++ RI N + + HTM ++ + V +SL + VGQ + V+
Sbjct: 217 VTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVV 276
Query: 277 VTANQDPKDYYL 288
+ A++ P +Y+
Sbjct: 277 IDASRAPDNYWF 288
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 103/248 (41%), Gaps = 28/248 (11%)
Query: 50 ILINGQFPGPNINSTTNDNLVINVFNKLDEPFL-LTWPGIQHKKNSWQDGV-LGTNCPIP 107
I NGQFP P+I D + I + N ++ + + G+ + DGV T CPI
Sbjct: 25 ITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPIA 84
Query: 108 PGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPVPYNRFVEDDFTLLI 167
PG Y V +G+Y YH T + G GL I P Y +++ +L +
Sbjct: 85 PGSTMLYNFTVDYNVGTYWYHSHTD-GQYEDGMKGLFIIKDDSFPYDY----DEELSLSL 139
Query: 168 GDWYTRSHVELGKQLDSGKLLGKPDGV------LINGKSGRLDYDSDGKGDNEPLFTMKA 221
+WY +L K S + P G LI + L ++ ++
Sbjct: 140 SEWYHDLVTDLTKSFMS---VYNPTGAEPIPQNLIVNNTMNLTWE------------VQP 184
Query: 222 GKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTANQ 281
Y RI NVG S F I+ H M +VE++G +N + L + V Q +TVLV
Sbjct: 185 DTTYLLRIVNVGGFVSQYFWIEDHEMTVVEIDGITTEKNVTDMLYITVAQRYTVLVHTKN 244
Query: 282 DPKDYYLI 289
D + I
Sbjct: 245 DTDKNFAI 252
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 106/254 (41%), Gaps = 17/254 (6%)
Query: 40 ISPLGIPQQGI-LINGQFPGPNINSTTNDNLVINVFNKLD-EPFLLTWPGIQHKKNSWQD 97
I P G+ + + L+N + GP I + DN+ + V N L + W G++ N + D
Sbjct: 88 IGPDGVLKNVVMLVNDKIIGPTIRANWGDNIEVTVINNLKTNGTSMHWHGLRQLGNVFND 147
Query: 98 GVLG-TNCPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPVPYN 156
G G T CPIPP Y Q G+ YH G G + I + +P +
Sbjct: 148 GANGVTECPIPPKGGRKTYKFRATQYGTSWYHSHFSAQYGNGVVGTIQIDGPASLPYDID 207
Query: 157 RFVEDDFTLLIGDWYTRSHVELGKQLDSGKLLGKP--DGVLINGKSGRLDYDSDGKGDNE 214
V F L+ D+Y RS EL S G P D VL NG + R G+ N
Sbjct: 208 LGV---FPLM--DYYYRSADELVHFTQSN---GAPPSDNVLFNG-TARHPETGAGQWYN- 257
Query: 215 PLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFT 274
T+ GK ++ RI N + GH M ++ + V SL + VGQ +
Sbjct: 258 --VTLTPGKRHRLRIINTSTDNHFQVSLVGHNMTVIATDMVPVNAFTVSSLFLAVGQRYD 315
Query: 275 VLVTANQDPKDYYL 288
V + AN +Y+
Sbjct: 316 VTIDANSPVGNYWF 329
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 53 NGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQ-DGV-LGTNCPIPPGK 110
NGQ P P I+ D++ +NV N P + W G+ ++ +WQ DGV T I PG
Sbjct: 28 NGQVPAPLIHVMEGDDVTVNVTNMTTLPHTIHWHGML-QRGTWQSDGVPHATQHAIEPGD 86
Query: 111 NYTYYLQVKDQIGSYIYHPSTGFHRAA---GGFGGLCIHSRSVVPVPYNRFVEDDFTLLI 167
+TY + + G+ YH + G +G L + ++ P+P + V D+ L++
Sbjct: 87 TFTYKFKA-EPAGTMWYHCHVNVNEHVTMRGMWGPLIVEPKN--PLPIEKTVTKDYILML 143
Query: 168 GDWYT 172
DW +
Sbjct: 144 SDWVS 148
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 103/254 (40%), Gaps = 30/254 (11%)
Query: 38 GTISPLGIP-QQGILIN--GQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNS 94
T +PL I Q+ L+ G FPGP + D + + + N+L EP L W G+
Sbjct: 23 ATPTPLAIAGQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGL-----P 77
Query: 95 WQDGVLGTNCPIPPGKNYTYYLQV-KDQIGSYIYHPSTGFHRA----AGGFGGLCIHSRS 149
V IPPG+++TY V K+ G++ YHP A AG G L + S S
Sbjct: 78 ISPKVDDPFLEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVES-S 136
Query: 150 VVPVPYNRFVEDDFTLLIGDWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDYDSDG 209
+ +P R E+ L++ D L G+ +NGK G L +
Sbjct: 137 LDAIPELREAEEHL-LVLKDL----------ALQGGRPAPHTPMDWMNGKEGDLVLVN-- 183
Query: 210 KGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQN-EYESLDVH 268
G P + + + R+ N +Q H + L+ +G + + E L +
Sbjct: 184 -GALRPTLVAQKATL-RLRLLNASNARYYRLALQDHPLYLIAADGGFLEEPLEVSELLLA 241
Query: 269 VGQCFTVLVTANQD 282
G+ VLV ++
Sbjct: 242 PGERAEVLVRLRKE 255
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 96/237 (40%), Gaps = 31/237 (13%)
Query: 53 NGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTNCPIPPGKNY 112
NG P P I D L I V NKL E + W G+ + QDG + PI G+
Sbjct: 76 NGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPD--QDG--SPHDPILAGEER 131
Query: 113 TYYLQV-KDQIGSYIYHPSTGFHRAAGGFGGLC----IHSRSVVPVPYNRFVEDDFTLLI 167
Y ++ +D G+Y YHP + + F GL I ++ + E D L+I
Sbjct: 132 IYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDA---LSHLKEKD--LMI 186
Query: 168 GDWYTRSHVELGKQLDSGKLLGKP-DGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYK 226
D + ++ + L G+ + VLING+ +P +K +
Sbjct: 187 SDLRLDENAQIPNNNLNDWLNGREGEFVLINGQF-------------KP--KIKLATNER 231
Query: 227 YRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEY-ESLDVHVGQCFTVLVTANQD 282
RI N LN RIQG LV +G + + Y E L + VL+ A +D
Sbjct: 232 IRIYNATAARYLNLRIQGAKFILVGTDGGLIEKTIYKEELFLSPASRVEVLIDAPKD 288
>pdb|1KBW|A Chain A, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|B Chain B, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|C Chain C, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|D Chain D, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|E Chain E, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|F Chain F, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBV|A Chain A, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|B Chain B, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|C Chain C, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|D Chain D, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|E Chain E, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|F Chain F, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
Length = 327
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 25/190 (13%)
Query: 108 PGKNYTYYLQVKDQIGSYIYHPST---GFHRAAGGFGGLCIHSRSVVPVPYNRFVEDDFT 164
PG+ T+ + Q G YIYH + G H A G +G + + + +P V+ +F
Sbjct: 115 PGRTSTFSFKAL-QPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPK-----VDKEFY 168
Query: 165 LLIGDWYTRSHVELGKQ----LDSGKLLG-KPDGVLINGKSGRLDYDSDGKGDNEPLFTM 219
++ GD+YT+ + G Q D K + +P+ V+ NG G L GDN
Sbjct: 169 IVQGDFYTKG--KKGAQGLQPFDMDKAVAEQPEYVVFNGHVGAL------TGDN--ALKA 218
Query: 220 KAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTA 279
KAG+ + + N G +F + G V +EG ++ +S V G V
Sbjct: 219 KAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKV 278
Query: 280 NQDPKDYYLI 289
+ P +Y L+
Sbjct: 279 DI-PGNYTLV 287
>pdb|2ZOO|A Chain A, Crystal Structure Of Nitrite Reductase From
Pseudoalteromonas Haloplanktis Tac125
Length = 442
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 20/174 (11%)
Query: 108 PGKNYTYYLQVKDQIGSYIYHPST---GFHRAAGGFGGLCIHSRSVVPVPYNRFVEDDFT 164
PG T+ + + G YIYH +T G H A G +G + + + + P +R ++
Sbjct: 105 PGHTSTFNFKALNP-GLYIYHCATAPVGMHIANGMYGLILVEPKEGL-APVDR----EYY 158
Query: 165 LLIGDWYTRSHV-ELGKQ-LDSGKLLGK-PDGVLINGKSGRLDYDSDGKGDNEPLFTMKA 221
L+ GD+YT+ E G Q D K + + D V+ NG S G +E T K
Sbjct: 159 LVQGDFYTKGEFGEAGLQPFDMAKAIDEDADYVVFNG--------SVGSTTDENSLTAKV 210
Query: 222 GKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTV 275
G+ + I N G +F + G V +EG + + ++ + G V
Sbjct: 211 GETVRLYIGNGGPNLVSSFHVIGEIFDTVYVEGGSLKNHNVQTTLIPAGGAAIV 264
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 40 ISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGV 99
I+P GI +G NG+ PGP + + D L I+ N P + + G+ + DG
Sbjct: 48 IAP-GIIFKGWSYNGRIPGPTLWAREGDALRIHFTNAGAHPHTIHFHGVH---RATMDGT 103
Query: 100 LGTNC-PIPPGKNYTYYLQVKDQIGSYIYH---PSTGFHRAAGGFGGLCIHSRSVVP 152
G I PG+++TY G+++YH H A G +GG + + P
Sbjct: 104 PGIGAGSIAPGQSFTYEFDAT-PFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKEGRP 159
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 23 EAGSPTFFFTWNVTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFL 82
E +P TY + G +G+L P I + + + NKL EP +
Sbjct: 8 ETSAPVPPLIKEATYIEATASGYMAEGVL------NPTIILRRGQRVDMTLKNKLTEPTI 61
Query: 83 LTWPGIQHKKNSWQDGVLGTNCPIPPGKNYTYYLQVKDQIGSYIYHP 129
+ W G +W + + I PG++Y Y V ++ G+Y+YHP
Sbjct: 62 VHWHGFD---VNWHNDA-HPSFAITPGESYNYSFDVVNRAGTYLYHP 104
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In Previously
Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 53 NGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTNCPIPPGKNY 112
NG GP + + ++++N+L E L W G++ DG G IPPG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 113 TYYLQVKDQIGSYIYHP----STGFHRAAGGFGGLCIHSRSVVPVPY-NRFVEDDFTLLI 167
+ L V + +HP TG A G G + I ++ + ++ DD +++
Sbjct: 98 SVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIV 157
Query: 168 GDWYTRSHVELGKQLD 183
D + ++ QLD
Sbjct: 158 QDKKFSADGQIDYQLD 173
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 53 NGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTNCPIPPGKNY 112
NG GP + + ++++N+L E L W G++ DG G IPPG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 113 TYYLQVKDQIGSYIYHP----STGFHRAAGGFGGLCIHSRSVVPVPY-NRFVEDDFTLLI 167
+ L V + +HP TG A G G + I ++ + ++ DD +++
Sbjct: 98 SVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIV 157
Query: 168 GDWYTRSHVELGKQLD 183
D + ++ QLD
Sbjct: 158 QDKKFSADGQIDYQLD 173
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 53 NGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTNCPIPPGKNY 112
NG GP + + ++++N+L E L W G++ DG G IPPG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 113 TYYLQVKDQIGSYIYHP----STGFHRAAGGFGGLCIHSRSVVPVPY-NRFVEDDFTLLI 167
+ L V + +HP TG A G G + I ++ + ++ DD +++
Sbjct: 98 SVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIV 157
Query: 168 GDWYTRSHVELGKQLD 183
D + ++ QLD
Sbjct: 158 QDKKFSADGQIDYQLD 173
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 53 NGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTNCPIPPGKNY 112
NG GP + + ++++N+L E L W G++ DG G IPPG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 113 TYYLQVKDQIGSYIYHP----STGFHRAAGGFGGLCIHSRSVVPVPY-NRFVEDDFTLLI 167
+ L V + +HP TG A G G + I ++ + ++ DD +++
Sbjct: 98 SVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIV 157
Query: 168 GDWYTRSHVELGKQLD 183
D + ++ QLD
Sbjct: 158 QDKKFSADGQIDYQLD 173
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 53 NGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTNCPIPPGKNY 112
NG GP + + ++++N+L E L W G++ DG G IPPG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 113 TYYLQVKDQIGSYIYHP----STGFHRAAGGFGGLCIHSRSVVPVPY-NRFVEDDFTLLI 167
+ L V + +HP TG A G G + I ++ + ++ DD +++
Sbjct: 98 SVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIV 157
Query: 168 GDWYTRSHVELGKQLD 183
D + ++ QLD
Sbjct: 158 QDKKFSADGQIDYQLD 173
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 53 NGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTNCPIPPGKNY 112
NG GP + + ++++N+L E L W G++ DG G IPPG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 113 TYYLQVKDQIGSYIYHP----STGFHRAAGGFGGLCIHSRSVVPVPY-NRFVEDDFTLLI 167
+ L V + +HP TG A G G + I ++ + ++ DD +++
Sbjct: 98 SVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIV 157
Query: 168 GDWYTRSHVELGKQLD 183
D + ++ QLD
Sbjct: 158 QDKKFSADGQIDYQLD 173
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 53 NGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTNCPIPPGKNY 112
NG GP + + ++++N+L E L W G++ DG G IPPG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 113 TYYLQVKDQIGSYIYHP----STGFHRAAGGFGGLCIHSRSVVPVPY-NRFVEDDFTLLI 167
+ L V + +HP TG A G G + I ++ + ++ DD +++
Sbjct: 98 SVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIV 157
Query: 168 GDWYTRSHVELGKQLD 183
D + ++ QLD
Sbjct: 158 QDKKFSADGQIDYQLD 173
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 53 NGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTNCPIPPGKNY 112
NG GP + + ++++N+L E L W G++ DG G IPPG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEV--DG--GPQGIIPPGGKR 97
Query: 113 TYYLQVKDQIGSYIYHP----STGFHRAAGGFGGLCIHSRSVVPVPY-NRFVEDDFTLLI 167
+ L V + +HP TG A G G + I ++ + ++ DD +++
Sbjct: 98 SVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIV 157
Query: 168 GDWYTRSHVELGKQLD 183
D + ++ QLD
Sbjct: 158 QDKKFSADGQIDYQLD 173
>pdb|2UXT|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXT|B Chain B, Sufi Protein From Escherichia Coli
pdb|2UXV|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXV|B Chain B, Sufi Protein From Escherichia Coli
Length = 451
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 26/160 (16%)
Query: 52 INGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVL--GTNCPIPPG 109
ING++ GP I D++ + N+L E +T G+Q G L G + P
Sbjct: 43 INGRYLGPTIRVWKGDDVKLIYSNRLTENVSMTVAGLQVP------GPLMGGPARMMSPN 96
Query: 110 KNYTYYLQVKDQIGSYIYH---PSTGFHRAAGGFGGLCIHSRSV---VPVPYNRFVEDDF 163
++ L ++ + YH P+ + G G+ + V +P+P N + DDF
Sbjct: 97 ADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLPIP-NHYGVDDF 155
Query: 164 TLLIGD-----WYTRSHVELGKQLDSGKLLGKPDGVLING 198
++I D + T + E G SG +G D +L+NG
Sbjct: 156 PVIIQDKRLDNFGTPEYNEPG----SGGFVG--DTLLVNG 189
>pdb|3S5H|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5I|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5K|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5M|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
Length = 1193
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 76 KLDEPFLLTWPGIQHKKNSWQDGVLGTNCPIPPGKNYTYYLQVKDQIGSYIYH 128
+ +E F +T+ QHKK Q LGTN P+ + + +Y++ G I H
Sbjct: 77 RYNEEFKMTYTVYQHKKAKTQVISLGTNDPLDVEQAFAFYVKTLTHSGKGIPH 129
>pdb|2VL7|A Chain A, Structure Of S. Tokodaii Xpd4
Length = 540
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 171 YTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDYDSDGKGDNEP 215
+TR+H +L + KLLG G LI GKS Y +GD EP
Sbjct: 57 FTRTHSQLDSIYKNAKLLGLKTGFLI-GKSASCIY---AQGDEEP 97
>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone
Length = 313
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 56 FPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTNCPIPPGKNYTY 114
PGP I D L I N +D P L G+ ++ +S DG + + PG TY
Sbjct: 39 IPGPLIELNEGDTLHIEFENTMDVPVSLHVHGLDYEISS--DGTKQSRSDVEPGGTRTY 95
>pdb|3NXD|C Chain C, Jc Polyomavirus Vp1 In Complex With Lstc
pdb|3NXD|B Chain B, Jc Polyomavirus Vp1 In Complex With Lstc
pdb|3NXD|A Chain A, Jc Polyomavirus Vp1 In Complex With Lstc
pdb|3NXD|D Chain D, Jc Polyomavirus Vp1 In Complex With Lstc
pdb|3NXD|E Chain E, Jc Polyomavirus Vp1 In Complex With Lstc
pdb|3NXG|A Chain A, Jc Polyomavirus Vp1
pdb|3NXG|B Chain B, Jc Polyomavirus Vp1
pdb|3NXG|C Chain C, Jc Polyomavirus Vp1
pdb|3NXG|D Chain D, Jc Polyomavirus Vp1
pdb|3NXG|E Chain E, Jc Polyomavirus Vp1
Length = 272
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 13/124 (10%)
Query: 419 ENVTLQPNVMDATYKAFMEIVLENRQNTMQSWILD-----GYAFFAVGMEPGTWNPDKRK 473
+N T+Q VM+ +KA+++ +N+ ++ W+ D +F + G P
Sbjct: 155 KNATVQSQVMNTEHKAYLD---KNKAYPVECWVPDPTRNENTRYFGT-LTGGENVPPVLH 210
Query: 474 SYNLIDAVSRYTIQVFPNCWA--AILVSMDNAGMWNLRSNIWERNYLGQQLYLSVRLHKR 531
N V V P C L ++D GM+ RS + + G Y V+L KR
Sbjct: 211 ITNTATTVLLDEFGVGPLCKGDNLYLSAVDVCGMFTNRSG--SQQWRGLSRYFKVQLRKR 268
Query: 532 SLRD 535
+++
Sbjct: 269 RVKN 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,122,452
Number of Sequences: 62578
Number of extensions: 825785
Number of successful extensions: 1540
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1437
Number of HSP's gapped (non-prelim): 71
length of query: 561
length of database: 14,973,337
effective HSP length: 104
effective length of query: 457
effective length of database: 8,465,225
effective search space: 3868607825
effective search space used: 3868607825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)