Query 046746
Match_columns 561
No_of_seqs 218 out of 1847
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 04:06:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02354 copper ion binding / 100.0 7E-113 1E-117 916.4 59.8 548 4-560 4-552 (552)
2 PLN02835 oxidoreductase 100.0 3E-111 7E-116 902.3 60.3 525 10-551 11-536 (539)
3 PLN02991 oxidoreductase 100.0 5E-111 1E-115 895.9 60.1 520 22-557 22-541 (543)
4 PLN00044 multi-copper oxidase- 100.0 4E-110 8E-115 893.6 60.0 541 12-557 11-565 (596)
5 PLN02792 oxidoreductase 100.0 1E-108 2E-113 879.9 59.2 514 24-552 12-529 (536)
6 PLN02168 copper ion binding / 100.0 2E-107 4E-112 870.4 58.7 508 24-547 22-542 (545)
7 KOG1263 Multicopper oxidases [ 100.0 1E-102 3E-107 825.6 56.9 525 21-553 21-562 (563)
8 TIGR03389 laccase laccase, pla 100.0 9E-100 2E-104 821.5 57.3 507 26-546 1-539 (539)
9 PLN02604 oxidoreductase 100.0 4.8E-98 1E-102 809.4 59.6 513 21-551 17-566 (566)
10 PLN02191 L-ascorbate oxidase 100.0 2.6E-97 6E-102 801.7 58.9 506 24-551 19-566 (574)
11 TIGR03388 ascorbase L-ascorbat 100.0 1.4E-96 3E-101 795.9 56.7 499 28-547 1-539 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 2.9E-94 6.4E-99 775.5 53.8 488 29-531 9-536 (538)
13 TIGR01480 copper_res_A copper- 100.0 5.4E-79 1.2E-83 655.7 50.8 427 29-527 46-587 (587)
14 PRK10965 multicopper oxidase; 100.0 1.1E-77 2.3E-82 641.4 46.9 412 28-527 45-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 1.1E-75 2.3E-80 621.1 44.8 400 30-528 47-469 (471)
16 COG2132 SufI Putative multicop 100.0 9.5E-60 2.1E-64 501.9 43.8 402 40-528 45-450 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 6.3E-48 1.4E-52 388.3 26.5 264 24-311 23-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 4.8E-36 1E-40 258.1 11.3 115 34-148 1-116 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 3.2E-30 6.9E-35 231.0 10.5 108 421-528 29-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 5.9E-27 1.3E-31 214.5 15.4 147 161-310 1-159 (159)
21 TIGR03095 rusti_cyanin rusticy 99.8 3.5E-18 7.5E-23 152.7 11.9 102 43-146 37-148 (148)
22 TIGR02376 Cu_nitrite_red nitri 99.7 1.7E-14 3.6E-19 145.8 24.1 243 191-528 47-297 (311)
23 TIGR01480 copper_res_A copper- 99.6 7.9E-16 1.7E-20 166.8 11.7 112 27-146 471-587 (587)
24 TIGR03096 nitroso_cyanin nitro 99.5 5.4E-13 1.2E-17 115.0 12.0 98 21-133 17-122 (135)
25 PRK10965 multicopper oxidase; 99.2 7.2E-10 1.6E-14 119.6 21.3 233 47-293 212-509 (523)
26 TIGR03389 laccase laccase, pla 99.1 4.3E-09 9.4E-14 114.8 21.3 239 192-512 23-264 (539)
27 PLN02835 oxidoreductase 99.1 5.8E-09 1.3E-13 113.1 20.7 225 192-509 49-276 (539)
28 PRK10883 FtsI repressor; Provi 99.1 4.3E-09 9.2E-14 112.6 18.7 220 46-293 208-454 (471)
29 PLN02354 copper ion binding / 99.0 1E-08 2.2E-13 111.4 19.6 233 192-511 47-283 (552)
30 PLN02168 copper ion binding / 99.0 2.2E-08 4.8E-13 108.4 20.3 219 192-502 46-267 (545)
31 PLN02792 oxidoreductase 99.0 2.6E-08 5.7E-13 107.7 20.0 228 192-509 36-267 (536)
32 PLN02991 oxidoreductase 99.0 2.7E-08 5.8E-13 107.5 19.1 225 192-508 48-276 (543)
33 PLN02604 oxidoreductase 98.9 6E-09 1.3E-13 114.1 12.2 89 428-530 57-146 (566)
34 PLN00044 multi-copper oxidase- 98.9 2E-07 4.3E-12 101.6 21.0 231 192-507 49-291 (596)
35 TIGR03390 ascorbOXfungal L-asc 98.9 1.6E-07 3.4E-12 102.4 20.4 235 192-503 28-266 (538)
36 COG2132 SufI Putative multicop 98.8 7.4E-08 1.6E-12 103.3 16.8 230 44-293 186-435 (451)
37 TIGR03388 ascorbase L-ascorbat 98.8 9.4E-08 2E-12 104.4 17.2 233 59-293 203-510 (541)
38 PF07731 Cu-oxidase_2: Multico 98.8 8E-09 1.7E-13 92.2 5.9 89 58-147 33-136 (138)
39 PRK02710 plastocyanin; Provisi 98.8 1.4E-07 3E-12 81.7 12.3 74 58-146 46-119 (119)
40 PLN02191 L-ascorbate oxidase 98.6 2.2E-06 4.7E-11 94.1 20.6 250 192-509 43-301 (574)
41 PF13473 Cupredoxin_1: Cupredo 98.6 7.7E-08 1.7E-12 81.4 7.0 89 24-145 16-104 (104)
42 PF07732 Cu-oxidase_3: Multico 98.6 1E-07 2.2E-12 82.1 7.1 89 427-529 27-116 (117)
43 KOG1263 Multicopper oxidases [ 98.4 3.3E-05 7.1E-10 83.6 20.0 227 192-511 48-286 (563)
44 TIGR02656 cyanin_plasto plasto 98.2 7.6E-06 1.6E-10 68.4 8.8 83 56-146 14-99 (99)
45 PF00394 Cu-oxidase: Multicopp 98.1 9.2E-06 2E-10 74.3 7.6 93 425-528 59-157 (159)
46 PRK02888 nitrous-oxide reducta 98.1 1.8E-05 4E-10 85.2 10.1 101 38-148 532-635 (635)
47 TIGR02657 amicyanin amicyanin. 98.0 3.7E-05 8E-10 62.0 8.3 76 56-146 8-83 (83)
48 PF00127 Copper-bind: Copper b 98.0 1.5E-05 3.3E-10 66.5 5.9 79 56-146 14-99 (99)
49 TIGR03095 rusti_cyanin rusticy 97.8 0.00015 3.2E-09 65.1 10.0 88 427-527 53-148 (148)
50 TIGR03094 sulfo_cyanin sulfocy 97.8 0.00056 1.2E-08 61.6 12.7 95 50-148 75-187 (195)
51 PF06525 SoxE: Sulfocyanin (So 97.7 0.00055 1.2E-08 63.0 11.8 100 48-148 74-188 (196)
52 COG3794 PetE Plastocyanin [Ene 97.5 0.00058 1.3E-08 59.0 8.5 75 59-147 54-128 (128)
53 TIGR02656 cyanin_plasto plasto 97.4 0.00058 1.3E-08 57.0 7.5 82 427-527 18-99 (99)
54 TIGR02375 pseudoazurin pseudoa 97.4 0.00088 1.9E-08 57.3 8.4 75 58-148 14-89 (116)
55 TIGR03096 nitroso_cyanin nitro 97.4 0.00088 1.9E-08 58.3 8.0 60 427-513 62-121 (135)
56 TIGR03102 halo_cynanin halocya 96.9 0.0051 1.1E-07 52.5 8.1 75 56-146 39-115 (115)
57 PF13473 Cupredoxin_1: Cupredo 96.7 0.0055 1.2E-07 51.6 6.7 61 427-514 36-96 (104)
58 PF00127 Copper-bind: Copper b 96.1 0.024 5.2E-07 47.2 7.4 82 426-527 17-99 (99)
59 PRK02710 plastocyanin; Provisi 95.9 0.033 7.1E-07 48.1 7.5 72 427-527 48-119 (119)
60 PRK10378 inactive ferrous ion 95.6 0.18 3.9E-06 52.1 12.6 77 55-148 40-118 (375)
61 PRK02888 nitrous-oxide reducta 95.3 0.067 1.4E-06 58.4 8.7 75 427-528 556-634 (635)
62 TIGR02657 amicyanin amicyanin. 94.9 0.14 3E-06 41.1 7.5 71 427-526 12-82 (83)
63 TIGR02375 pseudoazurin pseudoa 94.2 0.27 5.9E-06 42.1 8.1 40 490-533 54-93 (116)
64 COG4454 Uncharacterized copper 94.2 0.46 1E-05 42.2 9.5 89 55-147 59-158 (158)
65 COG4454 Uncharacterized copper 94.0 0.17 3.8E-06 44.8 6.5 92 428-527 65-157 (158)
66 PF00116 COX2: Cytochrome C ox 93.6 0.38 8.2E-06 41.5 7.9 74 58-145 45-119 (120)
67 PF00116 COX2: Cytochrome C ox 92.9 2 4.3E-05 37.1 11.4 62 215-295 46-107 (120)
68 TIGR03102 halo_cynanin halocya 91.2 1.2 2.7E-05 38.0 8.0 73 427-527 43-115 (115)
69 TIGR02866 CoxB cytochrome c ox 90.7 0.91 2E-05 43.0 7.4 78 426-531 117-195 (201)
70 COG3794 PetE Plastocyanin [Ene 90.6 1.2 2.6E-05 38.7 7.3 74 427-528 55-128 (128)
71 TIGR02695 azurin azurin. Azuri 89.4 2 4.3E-05 37.0 7.6 88 56-144 13-124 (125)
72 PF06525 SoxE: Sulfocyanin (So 87.5 4.4 9.5E-05 37.8 9.1 95 427-528 87-187 (196)
73 PF12690 BsuPI: Intracellular 84.8 10 0.00022 30.2 9.0 65 225-290 4-82 (82)
74 COG1622 CyoA Heme/copper-type 81.8 4.1 8.9E-05 39.8 6.7 82 425-535 136-218 (247)
75 COG4263 NosZ Nitrous oxide red 80.7 2.2 4.7E-05 44.4 4.4 78 60-147 559-637 (637)
76 TIGR03094 sulfo_cyanin sulfocy 80.3 13 0.00028 34.1 8.7 96 426-528 85-186 (195)
77 TIGR02866 CoxB cytochrome c ox 79.6 5.5 0.00012 37.7 6.7 77 58-148 116-193 (201)
78 COG1622 CyoA Heme/copper-type 76.8 14 0.0003 36.2 8.6 78 58-149 136-214 (247)
79 MTH00140 COX2 cytochrome c oxi 71.4 15 0.00033 35.5 7.4 78 425-530 139-217 (228)
80 TIGR03079 CH4_NH3mon_ox_B meth 71.2 41 0.00089 34.4 10.3 17 103-119 337-353 (399)
81 COG2967 ApaG Uncharacterized p 69.2 5.4 0.00012 33.7 3.2 55 70-124 33-95 (126)
82 PTZ00047 cytochrome c oxidase 64.7 26 0.00057 31.7 6.9 78 425-530 72-150 (162)
83 PF12690 BsuPI: Intracellular 64.5 31 0.00066 27.5 6.6 57 60-127 17-80 (82)
84 TIGR01433 CyoA cytochrome o ub 62.8 21 0.00045 34.5 6.4 77 427-531 140-217 (226)
85 MTH00047 COX2 cytochrome c oxi 62.6 44 0.00095 31.4 8.3 77 426-530 116-193 (194)
86 TIGR02695 azurin azurin. Azuri 62.5 54 0.0012 28.3 8.0 78 214-291 15-111 (125)
87 PF14344 DUF4397: Domain of un 59.4 1.1E+02 0.0024 25.9 10.4 21 226-246 3-24 (122)
88 PF14481 Fimbrial_PilY2: Type 58.6 5.8 0.00012 32.7 1.4 71 1-71 1-78 (118)
89 PF04151 PPC: Bacterial pre-pe 57.6 48 0.001 25.1 6.5 65 215-291 5-69 (70)
90 PF04744 Monooxygenase_B: Mono 56.6 60 0.0013 33.4 8.5 69 46-120 250-335 (381)
91 TIGR01432 QOXA cytochrome aa3 54.6 33 0.00071 32.9 6.2 76 428-531 132-208 (217)
92 PF10633 NPCBM_assoc: NPCBM-as 54.0 41 0.0009 26.1 5.7 67 219-292 1-75 (78)
93 PF07705 CARDB: CARDB; InterP 53.3 1.2E+02 0.0025 24.3 10.0 66 218-292 14-83 (101)
94 MTH00129 COX2 cytochrome c oxi 53.2 44 0.00096 32.3 6.9 78 425-530 139-217 (230)
95 PF01835 A2M_N: MG2 domain; I 52.4 92 0.002 25.2 7.9 69 219-292 11-85 (99)
96 PRK13254 cytochrome c-type bio 51.9 25 0.00055 31.5 4.6 74 22-102 27-103 (148)
97 MTH00098 COX2 cytochrome c oxi 51.6 58 0.0013 31.5 7.4 78 425-530 139-217 (227)
98 MTH00008 COX2 cytochrome c oxi 51.5 60 0.0013 31.4 7.5 78 425-530 139-217 (228)
99 PF05938 Self-incomp_S1: Plant 50.9 43 0.00093 28.1 5.7 70 70-148 2-71 (110)
100 MTH00185 COX2 cytochrome c oxi 49.5 74 0.0016 30.8 7.8 78 425-530 139-217 (230)
101 PRK05461 apaG CO2+/MG2+ efflux 45.8 27 0.00058 30.4 3.7 20 96-115 66-85 (127)
102 KOG4063 Major epididymal secre 43.2 1.7E+02 0.0037 26.2 8.1 60 60-119 49-123 (158)
103 MTH00117 COX2 cytochrome c oxi 43.1 90 0.0019 30.2 7.2 78 425-530 139-217 (227)
104 MTH00047 COX2 cytochrome c oxi 41.5 1.9E+02 0.0041 27.2 8.9 61 215-294 116-176 (194)
105 COG1188 Ribosome-associated he 39.3 24 0.00052 29.1 2.2 34 50-83 36-69 (100)
106 PF04379 DUF525: Protein of un 38.9 20 0.00043 29.1 1.7 22 96-117 49-70 (90)
107 PRK10378 inactive ferrous ion 38.8 93 0.002 32.5 6.9 78 212-310 41-118 (375)
108 PRK10301 hypothetical protein; 37.9 1.9E+02 0.0042 24.9 7.8 23 66-88 85-108 (124)
109 MTH00140 COX2 cytochrome c oxi 37.5 1.6E+02 0.0036 28.3 8.1 61 215-294 140-200 (228)
110 MTH00076 COX2 cytochrome c oxi 37.5 1.2E+02 0.0027 29.2 7.2 78 425-530 139-217 (228)
111 MTH00023 COX2 cytochrome c oxi 37.5 1.5E+02 0.0031 29.0 7.8 79 425-531 150-229 (240)
112 PRK13159 cytochrome c-type bio 36.0 84 0.0018 28.3 5.3 77 22-102 27-104 (155)
113 PF11142 DUF2917: Protein of u 35.7 95 0.002 23.3 4.8 46 217-274 2-47 (63)
114 COG1470 Predicted membrane pro 35.2 3.9E+02 0.0084 28.7 10.6 74 215-295 389-470 (513)
115 PF03100 CcmE: CcmE; InterPro 35.2 16 0.00035 32.0 0.7 74 23-102 27-103 (131)
116 PF11614 FixG_C: IG-like fold 34.9 1.6E+02 0.0034 24.9 6.8 48 224-280 34-83 (118)
117 PF14524 Wzt_C: Wzt C-terminal 34.6 1.3E+02 0.0029 25.8 6.6 72 218-292 30-107 (142)
118 PF02102 Peptidase_M35: Deuter 33.8 14 0.0003 38.2 0.0 43 81-128 78-121 (359)
119 MTH00051 COX2 cytochrome c oxi 33.4 1.6E+02 0.0035 28.5 7.4 79 424-530 142-221 (234)
120 PRK10525 cytochrome o ubiquino 33.1 87 0.0019 31.9 5.6 74 427-528 152-226 (315)
121 PF07691 PA14: PA14 domain; I 32.0 2.5E+02 0.0055 24.2 8.0 61 216-281 53-120 (145)
122 MTH00139 COX2 cytochrome c oxi 31.7 1.4E+02 0.0031 28.7 6.7 79 424-530 138-217 (226)
123 smart00758 PA14 domain in bact 31.7 2.9E+02 0.0062 23.7 8.2 63 217-284 52-115 (136)
124 COG4633 Plastocyanin domain co 31.7 2.5E+02 0.0054 26.9 7.8 88 42-150 80-172 (272)
125 PF10989 DUF2808: Protein of u 29.5 54 0.0012 29.2 3.1 26 488-513 99-128 (146)
126 PRK11372 lysozyme inhibitor; P 29.2 2.4E+02 0.0052 23.8 6.8 16 1-16 3-18 (109)
127 KOG4387 Ornithine decarboxylas 28.2 26 0.00056 32.0 0.8 28 61-88 71-98 (191)
128 cd00918 Der-p2_like Several gr 28.2 2.4E+02 0.0052 24.2 6.7 61 59-119 20-88 (120)
129 PF14392 zf-CCHC_4: Zinc knuck 27.6 1.2E+02 0.0025 21.4 3.9 41 478-518 4-45 (49)
130 MTH00038 COX2 cytochrome c oxi 26.6 2.6E+02 0.0056 27.0 7.4 78 425-530 139-217 (229)
131 MTH00154 COX2 cytochrome c oxi 26.3 2.2E+02 0.0047 27.5 6.8 78 425-530 139-217 (227)
132 PRK13202 ureB urease subunit b 25.5 2E+02 0.0044 23.9 5.4 64 215-279 11-84 (104)
133 cd00916 Npc2_like Niemann-Pick 25.2 2.6E+02 0.0056 24.0 6.5 18 102-119 75-92 (123)
134 PTZ00047 cytochrome c oxidase 25.2 5.2E+02 0.011 23.5 8.9 60 215-293 73-132 (162)
135 PF10989 DUF2808: Protein of u 24.7 85 0.0018 27.9 3.5 29 103-131 96-127 (146)
136 KOG1554 COP9 signalosome, subu 24.7 52 0.0011 32.4 2.2 9 124-132 134-142 (347)
137 MTH00008 COX2 cytochrome c oxi 23.3 2.6E+02 0.0055 27.0 6.7 60 215-293 140-199 (228)
138 COG4263 NosZ Nitrous oxide red 23.0 2.2E+02 0.0048 30.3 6.4 38 485-522 593-634 (637)
139 TIGR01433 CyoA cytochrome o ub 22.3 3.4E+02 0.0073 26.2 7.3 61 215-294 139-199 (226)
140 PF04379 DUF525: Protein of un 21.4 1.8E+02 0.0039 23.6 4.4 49 224-275 15-67 (90)
141 PF08194 DIM: DIM protein; In 21.1 1.5E+02 0.0032 19.6 3.0 14 1-14 1-14 (36)
142 PF14874 PapD-like: Flagellar- 20.9 4.5E+02 0.0097 21.2 9.4 58 219-288 16-82 (102)
143 PLN00115 pollen allergen group 20.7 1.3E+02 0.0028 25.8 3.6 20 1-20 1-20 (118)
144 TIGR01432 QOXA cytochrome aa3 20.4 3.5E+02 0.0076 25.8 7.0 61 215-294 130-190 (217)
No 1
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=6.6e-113 Score=916.40 Aligned_cols=548 Identities=70% Similarity=1.231 Sum_probs=440.4
Q ss_pred hHHHHHHHHHHHHHhhcccccCCCeEEEEEEEEEEEecCCCeeeeEEEECCcCCCCeEEecCCCEEEEEEEeCCCCCeee
Q 046746 4 TRLMMLLICFLAAATSGLVEAGSPTFFFTWNVTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLL 83 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~i 83 (561)
-|++.+..|+++++++. ..|.+.+++|+|+|++...++||+.+.+++|||++|||+|++++||+|+|+|+|+|+++++|
T Consensus 4 ~~~~~~~~~~~~~~~~~-~~~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~tti 82 (552)
T PLN02354 4 GRLLAVLLCLAAAVALV-VRAEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLL 82 (552)
T ss_pred HHHHHHHHHHHHHHHHh-hhccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCccc
Confidence 34554444555544433 34456789999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCccCCCCCCCCCCCccCCccCCCCeEEEEEEecCceeeeeEecCchhhhccCceeEEEEecCCCCCCCCCCCCCCce
Q 046746 84 TWPGIQHKKNSWQDGVLGTNCPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPVPYNRFVEDDF 163 (561)
Q Consensus 84 H~HG~~~~~~~~~DGv~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~~e~ 163 (561)
||||++|.+++|+||++++||||+||++|+|+|++.+++||||||||...|+.+||+|+|||+++...+.+|+. .++|+
T Consensus 83 HWHGi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~-~d~e~ 161 (552)
T PLN02354 83 TWSGIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYAD-PEDDY 161 (552)
T ss_pred ccccccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCC-cCceE
Confidence 99999999999999999999999999999999997678999999999999999999999999998666667754 57899
Q ss_pred EEEecceeecchHHhhhhhcCCCCCCCCCeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEe
Q 046746 164 TLLIGDWYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQ 243 (561)
Q Consensus 164 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~ 243 (561)
+|+++||+++....+...+..+...+.++.+||||+.... + ....+.++|++|++|||||||+|....+.|+|+
T Consensus 162 ~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~-~-----~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~Id 235 (552)
T PLN02354 162 TVLIGDWYTKSHTALKKFLDSGRTLGRPDGVLINGKSGKG-D-----GKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQ 235 (552)
T ss_pred EEEeeeeccCCHHHHHHHHhcCCCCCCCCeEEEeCCcCCC-C-----CCCceEEEECCCCEEEEEEEecCCCceEEEEEC
Confidence 9999999998776665555555445678999999997411 1 123478999999999999999999999999999
Q ss_pred CcccEEEeecCcccceeeeeeEEEcccceEEEEEEeCCCCCceEEEEEeeccCCcceeEEEEEecCCCCCCCCCCCCCCC
Q 046746 244 GHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTANQDPKDYYLIASTRFTRTVITTTAIVRYSDSKGLASPDLPKAPV 323 (561)
Q Consensus 244 gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~ 323 (561)
||+|+|||+||.+++|..+++|.|++||||||+|++++++|+|||++...+........|+|+|.++....+...|..+.
T Consensus 236 gH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~ 315 (552)
T PLN02354 236 GHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPV 315 (552)
T ss_pred CceEEEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCc
Confidence 99999999999999999999999999999999999998899999999865444456789999998865432223333222
Q ss_pred CccccccccccccccccccCCCCCCCCCCCcCCcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchhhhhhcCCCCc
Q 046746 324 GWDWSLNQFRSFRWNLTASAARPNPQGSFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEYYGIPEE 403 (561)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~ 403 (561)
+..+....+.+.+..+.+....|.+...........++++.+.......++..+|+|||.+|..|+.|+|++.++++..|
T Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g 395 (552)
T PLN02354 316 GWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADK 395 (552)
T ss_pred ccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCC
Confidence 22222223333333333322233332221111223445555543222234667899999999999999987765545456
Q ss_pred ccccC-CCCCCCCcccccccccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCc
Q 046746 404 VFKYN-VISDKPADEIENVTLQPNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVS 482 (561)
Q Consensus 404 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~ 482 (561)
.++.+ +....|..++ ....+++++.++.|++|||+|+|.+...||||||||+||||++|.|.|++.....+|+.||++
T Consensus 396 ~~~~~~~~~~pp~~~~-~~~~~~~v~~~~~~~~VeiVi~n~~~~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~r 474 (552)
T PLN02354 396 VFKYDTIKDNPPAKIT-KIKIQPNVLNITFRTFVEIIFENHEKSMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVS 474 (552)
T ss_pred ccccCccccCCccccC-ccccCCeeEEcCCCCEEEEEEeCCCCCCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCc
Confidence 65533 1222232111 234567889999999999999999888999999999999999999999876666799999999
Q ss_pred eeEEEeCCCcEEEEEEEeCCcceeeeecccchhhhccceEEEEEecCCcccccccCCCCccccccCccCCCCCCCCCC
Q 046746 483 RYTIQVFPNCWAAILVSMDNAGMWNLRSNIWERNYLGQQLYLSVRLHKRSLRDEYNMPDNALLCGIVANMSKPTPYSL 560 (561)
Q Consensus 483 rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~~~~~~~~~ 560 (561)
|||+.||++||++|||++||||.|+|||||+.|++.||++++.|.+++...++..++|++.+.|+..++..+|-|||+
T Consensus 475 RDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C~~~~~~~~~~~~~~ 552 (552)
T PLN02354 475 RHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLCGKVKGLPKPPPYSI 552 (552)
T ss_pred cceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCccccccccccCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999998887777777789999999999999999999985
No 2
>PLN02835 oxidoreductase
Probab=100.00 E-value=3.2e-111 Score=902.28 Aligned_cols=525 Identities=59% Similarity=1.047 Sum_probs=426.1
Q ss_pred HHHHHHHHhhcccccCCCeEEEEEEEEEEEecCCCeeeeEEEECCcCCCCeEEecCCCEEEEEEEeCCCCCeeeeeCCcc
Q 046746 10 LICFLAAATSGLVEAGSPTFFFTWNVTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQ 89 (561)
Q Consensus 10 ~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~ 89 (561)
+..++.++.+++..+.+.+|+|+|+|++...++||+++.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~ 90 (539)
T PLN02835 11 LGVLAVLSSVSLVNGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIK 90 (539)
T ss_pred HHHHHHHHHHhhhhccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcc
Confidence 44445554555556667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccCCccCCCCeEEEEEEecCceeeeeEecCchhhhccCceeEEEEecCCCCCCCCCCCCCCceEEEecc
Q 046746 90 HKKNSWQDGVLGTNCPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPVPYNRFVEDDFTLLIGD 169 (561)
Q Consensus 90 ~~~~~~~DGv~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~~e~~l~~~d 169 (561)
|.+++||||++++||||+||++|+|+|++++++||||||||...|+.+||+|+|||++++..+.++.. .|+|++|+++|
T Consensus 91 ~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~-~d~e~~l~l~D 169 (539)
T PLN02835 91 QRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPL-PDGDFTLLVGD 169 (539)
T ss_pred cCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCC-CCceEEEEeec
Confidence 99999999999999999999999999998778999999999999999999999999876555555544 58899999999
Q ss_pred eeecchHHhhhhhcCCCCCCCCCeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEE
Q 046746 170 WYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKL 249 (561)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v 249 (561)
|+++....+...+..+...+.++.+||||+.. +.++|++|++|||||||+|..+.+.|+|+||+|+|
T Consensus 170 w~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~-------------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~V 236 (539)
T PLN02835 170 WYKTSHKTLQQRLDSGKVLPFPDGVLINGQTQ-------------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKL 236 (539)
T ss_pred cccCCHHHHHHHhhcCCCCCCCceEEEccccC-------------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEE
Confidence 99987666655555565567889999999997 88999999999999999999999999999999999
Q ss_pred EeecCcccceeeeeeEEEcccceEEEEEEeCCCCCceEEEEEeeccCCcceeEEEEEecCCCCCCCCCCCCCCC-Ccccc
Q 046746 250 VEMEGSHVVQNEYESLDVHVGQCFTVLVTANQDPKDYYLIASTRFTRTVITTTAIVRYSDSKGLASPDLPKAPV-GWDWS 328 (561)
Q Consensus 250 ia~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~-~~~~~ 328 (561)
|++||++++|..+++|.|++||||||+|++++++|+|||++...+........|+|+|.++..+.+.++|..|. +...+
T Consensus 237 I~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~ 316 (539)
T PLN02835 237 VEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWS 316 (539)
T ss_pred EEECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccc
Confidence 99999999999999999999999999999998889999998754433446789999998864322223443221 11112
Q ss_pred ccccccccccccccCCCCCCCCCCCcCCcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchhhhhhcCCCCcccccC
Q 046746 329 LNQFRSFRWNLTASAARPNPQGSFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEYYGIPEEVFKYN 408 (561)
Q Consensus 329 ~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~ 408 (561)
...+....+.+.+....|.+...........++++.+.......+|..+|+|||++|..|+.|+|++.+++. +++|+.+
T Consensus 317 ~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~-~~~~~~~ 395 (539)
T PLN02835 317 MRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGI-PGVFSVN 395 (539)
T ss_pred cchhhccccccCccccCCCCCccccccccCCCceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcC-CCccccC
Confidence 222222222333333333332222222223345554432222235667899999999988999987666543 5666644
Q ss_pred CCCCCCCcccccccccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEe
Q 046746 409 VISDKPADEIENVTLQPNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQV 488 (561)
Q Consensus 409 ~~~~~p~~~~~~~~~~~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~v 488 (561)
.....+.. ...+.+++++.++.|++|||+|+|.+...||||||||+||||++|.|.|++.....+|+.||++|||+.|
T Consensus 396 ~~~~~~~~--~~~~~~t~~~~~~~~~~Veivi~N~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~v 473 (539)
T PLN02835 396 SIQSLPSG--GPAFVATSVMQTSLHDFLEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQV 473 (539)
T ss_pred ccccCCCC--CccccCCeEEEcCCCCEEEEEEECCCCCCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEe
Confidence 32222221 1245678899999999999999999988999999999999999999989866555689999999999999
Q ss_pred CCCcEEEEEEEeCCcceeeeecccchhhhccceEEEEEecCCcccccccCCCCccccccCccC
Q 046746 489 FPNCWAAILVSMDNAGMWNLRSNIWERNYLGQQLYLSVRLHKRSLRDEYNMPDNALLCGIVAN 551 (561)
Q Consensus 489 p~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~ 551 (561)
+++||++|||+|||||.|+|||||++|+..||++++.|+++.....++++||++++.||..++
T Consensus 474 p~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~Cg~~~~ 536 (539)
T PLN02835 474 YPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLCGKAIG 536 (539)
T ss_pred CCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCccccccccCcc
Confidence 999999999999999999999999999999999999999988877778999999999986655
No 3
>PLN02991 oxidoreductase
Probab=100.00 E-value=5.2e-111 Score=895.93 Aligned_cols=520 Identities=57% Similarity=1.028 Sum_probs=426.3
Q ss_pred cccCCCeEEEEEEEEEEEecCCCeeeeEEEECCcCCCCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCc
Q 046746 22 VEAGSPTFFFTWNVTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLG 101 (561)
Q Consensus 22 ~~a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~ 101 (561)
..|.+++++|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++||||+++
T Consensus 22 ~~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~ 101 (543)
T PLN02991 22 VAAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYG 101 (543)
T ss_pred hhccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCeEEEEEEecCceeeeeEecCchhhhccCceeEEEEecCCCCCCCCCCCCCCceEEEecceeecchHHhhhh
Q 046746 102 TNCPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPVPYNRFVEDDFTLLIGDWYTRSHVELGKQ 181 (561)
Q Consensus 102 ~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~ 181 (561)
+||||+||++|+|+|++++++||||||||.+.|+.+||+|+|||++++.++.++.. .++|.+|+|+||+++....+...
T Consensus 102 tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~-~d~d~~i~l~DW~~~~~~~~~~~ 180 (543)
T PLN02991 102 TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPA-PADDYTVLIGDWYKTNHKDLRAQ 180 (543)
T ss_pred CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCccccc-ccceeEEEecceecCCHHHHHHH
Confidence 99999999999999998778999999999999999999999999998666666644 57899999999999876665544
Q ss_pred hcCCCCCCCCCeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEeecCcccceee
Q 046746 182 LDSGKLLGKPDGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNE 261 (561)
Q Consensus 182 ~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~ 261 (561)
+..++..+++|.+||||++. .+.++|++|++|||||||+|....+.|+|+||+|+||++||.+++|..
T Consensus 181 ~~~~~~~~~~d~~liNG~~~------------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~ 248 (543)
T PLN02991 181 LDNGGKLPLPDGILINGRGS------------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTP 248 (543)
T ss_pred hhcCCCCCCCCEEEEccCCC------------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCcccccee
Confidence 55555566889999999975 278999999999999999999999999999999999999999999999
Q ss_pred eeeEEEcccceEEEEEEeCCCCCceEEEEEeeccCCcceeEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccc
Q 046746 262 YESLDVHVGQCFTVLVTANQDPKDYYLIASTRFTRTVITTTAIVRYSDSKGLASPDLPKAPVGWDWSLNQFRSFRWNLTA 341 (561)
Q Consensus 262 ~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~~ 341 (561)
++++.|++||||||+|++++++|+|||++...+........|||+|.++......+.|..|.+..++.+.....+..+.+
T Consensus 249 ~~~l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p 328 (543)
T PLN02991 249 FSSLDVHVGQSYSVLITADQPAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTA 328 (543)
T ss_pred eeEEEEcCCcEEEEEEECCCCCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccC
Confidence 99999999999999999999899999999865444456789999999875322223444333333332222222233433
Q ss_pred cCCCCCCCCCCCcCCcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchhhhhhcCCCCcccccCCCCCCCCcccccc
Q 046746 342 SAARPNPQGSFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEYYGIPEEVFKYNVISDKPADEIENV 421 (561)
Q Consensus 342 ~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 421 (561)
....+.|...+.......++.+.+.......+|..+|+|||.+|..|..|+|++.++.+ .|+|+.+.....|... ..
T Consensus 329 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~-~g~~~~~~~~~~~~~~--~~ 405 (543)
T PLN02991 329 SGPRPNPQGSYHYGKINITRTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKI-AGVYNPGSIPDQPTNG--AI 405 (543)
T ss_pred CCCCCCCCccccccccccceeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcc-cCccccccccccCCCC--cc
Confidence 22233333322222233444444432221224567899999999999999987766643 5777654222222211 23
Q ss_pred cccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeC
Q 046746 422 TLQPNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMD 501 (561)
Q Consensus 422 ~~~~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~ad 501 (561)
...++++.++.|++|||+|+|.+...||||||||+||||++|.|.|++.+...||+.||++|||+.||++||++|||++|
T Consensus 406 ~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aD 485 (543)
T PLN02991 406 FPVTSVMQTDYKAFVEIVFENWEDIVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLD 485 (543)
T ss_pred ccCCcEEEcCCCCEEEEEEeCCCCCCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECC
Confidence 35677889999999999999998889999999999999999999998776667999999999999999999999999999
Q ss_pred CcceeeeecccchhhhccceEEEEEecCCcccccccCCCCccccccCccCCCCCCC
Q 046746 502 NAGMWNLRSNIWERNYLGQQLYLSVRLHKRSLRDEYNMPDNALLCGIVANMSKPTP 557 (561)
Q Consensus 502 npG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~~~~~~ 557 (561)
|||.|+|||||..|+..||++++.|.+++...+++++||++.++||..++--+-||
T Consensus 486 NPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~Cg~~~~~~~~~~ 541 (543)
T PLN02991 486 NVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLCGRATGHHTTTP 541 (543)
T ss_pred CCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCccccCCCCCCCCC
Confidence 99999999999999999999999999998888888999999999987777544444
No 4
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=3.9e-110 Score=893.58 Aligned_cols=541 Identities=48% Similarity=0.851 Sum_probs=431.0
Q ss_pred HHHHHHhhcccccCCCeEEEEEEEEEEEecCCC--eeeeEEEECCcCCCCeEEecCCCEEEEEEEeCCCCCeeeeeCCcc
Q 046746 12 CFLAAATSGLVEAGSPTFFFTWNVTYGTISPLG--IPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQ 89 (561)
Q Consensus 12 ~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~dG--~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~ 89 (561)
|.+++.+.+.+.|.+.+++|+|++++..+++|| ..+.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~ 90 (596)
T PLN00044 11 AAALALAPAPAGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQ 90 (596)
T ss_pred HHHHhcCCCccccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCcc
Confidence 333443455566788999999999999999999 556899999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccCCccCCCCeEEEEEEecCceeeeeEecCchhhhccCceeEEEEecCCCCCCCCCCCCCCceEEEecc
Q 046746 90 HKKNSWQDGVLGTNCPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPVPYNRFVEDDFTLLIGD 169 (561)
Q Consensus 90 ~~~~~~~DGv~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~~e~~l~~~d 169 (561)
|++++|+||++++||||+||++|+|+|++++++||||||||.+.|+.+||+|+|||++++..+.||....++|.+|+|+|
T Consensus 91 q~~t~w~DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~D 170 (596)
T PLN00044 91 QRKSAWQDGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIAD 170 (596)
T ss_pred CCCCccccCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecc
Confidence 99999999999999999999999999998778999999999999999999999999998766666654224799999999
Q ss_pred eeecchHHhhhhhcCCCCCCCCCeEEEcCccCCCCCCCC--CCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCccc
Q 046746 170 WYTRSHVELGKQLDSGKLLGKPDGVLINGKSGRLDYDSD--GKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTM 247 (561)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~--~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~ 247 (561)
|++++...+...+..+.....++.++|||++. +.++|+ ...+..+.++|++|++|||||||++....+.|+|+||+|
T Consensus 171 W~~~~~~~~~~~l~~g~~~~~~d~~lING~g~-~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~m 249 (596)
T PLN00044 171 WYARDHRALRRALDAGDLLGAPDGVLINAFGP-YQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNL 249 (596)
T ss_pred cccCCHHHHHHHHhcCCCCCCCCceEEcccCc-cccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEE
Confidence 99987766655555554456789999999985 333443 123455789999999999999999999999999999999
Q ss_pred EEEeecCcccceeeeeeEEEcccceEEEEEEeCCCCC-ceEEEEEeecc----CCcceeEEEEEecCCCCCCCCCCCCCC
Q 046746 248 KLVEMEGSHVVQNEYESLDVHVGQCFTVLVTANQDPK-DYYLIASTRFT----RTVITTTAIVRYSDSKGLASPDLPKAP 322 (561)
Q Consensus 248 ~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g-~y~i~~~~~~~----~~~~~~~ail~y~~~~~~~~~~~p~~p 322 (561)
+||++||.+++|..+++|.|++||||||+|+++++++ +|||++...+. .+...+.|||+|.++......++|..|
T Consensus 250 tVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p 329 (596)
T PLN00044 250 LLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAP 329 (596)
T ss_pred EEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEEEECCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999998765 99999875321 245678899999886532222234322
Q ss_pred ---CCccccccccccccccccccCCCCCCCCCCCcCCcCcceEEEEccc-eeccCCeEEEEEcCeeccCCCCchhhhhhc
Q 046746 323 ---VGWDWSLNQFRSFRWNLTASAARPNPQGSFHYGGIPINRTIRLANT-AHLVNGKVRFAVNGVSYVNSETPLKFAEYY 398 (561)
Q Consensus 323 ---~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~ 398 (561)
.+..++.++...++....+....+.|............+.+.+... ....+|..+|+|||.+|..|+.|+|++.++
T Consensus 330 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~ 409 (596)
T PLN00044 330 DDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIF 409 (596)
T ss_pred cccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCCcchhhhhc
Confidence 1222222222333322232222333332221111112222222110 001135678999999999999999887777
Q ss_pred CCCCcccccCCCCCCCCcccccccccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCC
Q 046746 399 GIPEEVFKYNVISDKPADEIENVTLQPNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLI 478 (561)
Q Consensus 399 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~ 478 (561)
++ .++|+.++.+.+|.. .....+.++.+++|++|||+|+|.....||||||||+|+||++|.|+|++.++..||+.
T Consensus 410 ~~-~gv~~~~fp~~pp~~---~~~~~t~v~~~~~n~~VeiV~qn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~ 485 (596)
T PLN00044 410 NV-PGVFKLDFPNHPMNR---LPKLDTSIINGTYKGFMEIIFQNNATNVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKW 485 (596)
T ss_pred cC-CCcccCCCCCCCCcc---ccccCceEEEcCCCCEEEEEEeCCCCCCCCeeEcCccEEEEeecCCCCCCCcccccccC
Confidence 55 577776655544431 23347889999999999999999877899999999999999999999998777789999
Q ss_pred CCCceeEEEeCCCcEEEEEEEeCCcceeeeecccchhhhccceEEEEEecCCcc-cccccCCCCccccccCccCCCCCCC
Q 046746 479 DAVSRYTIQVFPNCWAAILVSMDNAGMWNLRSNIWERNYLGQQLYLSVRLHKRS-LRDEYNMPDNALLCGIVANMSKPTP 557 (561)
Q Consensus 479 ~P~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~-~~~~~~~p~~~~~c~~~~~~~~~~~ 557 (561)
||++|||+.|+++||++|||++||||.|+|||||+.|++.||+++|.|.++.+. .+++++||++++.||.-+++.++-+
T Consensus 486 nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~Cg~~~~~~~~~~ 565 (596)
T PLN00044 486 DGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFCGALSSLQKEQS 565 (596)
T ss_pred CCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCcccccccCCCCCC
Confidence 999999999999999999999999999999999999999999999999988764 6678999999999998877666544
No 5
>PLN02792 oxidoreductase
Probab=100.00 E-value=9.9e-109 Score=879.94 Aligned_cols=514 Identities=53% Similarity=0.937 Sum_probs=421.6
Q ss_pred cCCCeEEEEEEEEEEEecCCCeeeeEEEECCcCCCCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCccC
Q 046746 24 AGSPTFFFTWNVTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTN 103 (561)
Q Consensus 24 a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q 103 (561)
+.+++++|+|+|++...++||+.+.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++|+||++++|
T Consensus 12 ~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tq 91 (536)
T PLN02792 12 KADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTT 91 (536)
T ss_pred hcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCc
Confidence 55667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCeEEEEEEecCceeeeeEecCchhhhccCceeEEEEecCCCCCCCCCCCCCCceEEEecceeecchHHhhhhhc
Q 046746 104 CPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPVPYNRFVEDDFTLLIGDWYTRSHVELGKQLD 183 (561)
Q Consensus 104 ~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~ 183 (561)
|||+||++|+|+|++++++||||||||...|+.+||+|+|||++++..+.+++. .++|++|+++||+++....+...++
T Consensus 92 cPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~-~d~e~~i~l~Dw~~~~~~~~~~~~~ 170 (536)
T PLN02792 92 CPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPE-PAGDFTFLIGDWYRRNHTTLKKILD 170 (536)
T ss_pred CccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCc-ccceeEEEecccccCCHHHHHHHhh
Confidence 999999999999998778999999999999999999999999886555556554 5789999999999987666655555
Q ss_pred CCCCCC-CCCeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEeecCcccceeee
Q 046746 184 SGKLLG-KPDGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEY 262 (561)
Q Consensus 184 ~~~~~~-~~~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~ 262 (561)
.+...+ +++.+||||++.. ..+.++|++|++|||||||+|..+.+.|+|+||+|+|||+||++++|..+
T Consensus 171 ~g~~~~~~~d~~liNG~~~~----------~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~ 240 (536)
T PLN02792 171 GGRKLPLMPDGVMINGQGVS----------YVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMY 240 (536)
T ss_pred ccCcCCCCCCEEEEeccCCC----------CcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcce
Confidence 554333 7899999999851 12789999999999999999999999999999999999999999999999
Q ss_pred eeEEEcccceEEEEEEeCCCCCceEEEEEeeccCCcceeEEEEEecCCCCCCCCCCCCCC--CCcccccccccccccccc
Q 046746 263 ESLDVHVGQCFTVLVTANQDPKDYYLIASTRFTRTVITTTAIVRYSDSKGLASPDLPKAP--VGWDWSLNQFRSFRWNLT 340 (561)
Q Consensus 263 ~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p--~~~~~~~~~~~~~~~~l~ 340 (561)
++|.|++||||||+|++++++|+|||++...+........|||+|.++..... ..|..| .+..++......++..+.
T Consensus 241 ~~l~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~-~~p~~p~~~~~~~~~~~~~~~~~~l~ 319 (536)
T PLN02792 241 TSLDIHVGQTYSVLVTMDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKI-IHARQPDPDDLEWSIKQAQSIRTNLT 319 (536)
T ss_pred eEEEEccCceEEEEEEcCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCC-CCCCCCCcCCccccccchhhhhhccC
Confidence 99999999999999999988899999998754444567889999988653211 112222 233333322223333333
Q ss_pred ccCCCCCCCCCCCcCCcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchhhhhhcCCCCcccccC-CCCCCCCcccc
Q 046746 341 ASAARPNPQGSFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEYYGIPEEVFKYN-VISDKPADEIE 419 (561)
Q Consensus 341 ~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~-~~~~~p~~~~~ 419 (561)
+..+.+.|...........++++.+.......++...|+|||.+|..|+.|+|++.++.+ .|+|+.+ +...+|..+
T Consensus 320 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~-~g~~~~~~~~~~p~~~~-- 396 (536)
T PLN02792 320 ASGPRTNPQGSYHYGKMKISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKI-KGVFKVGSIPDKPRRGG-- 396 (536)
T ss_pred CCCCCCCCCcccccceeccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhcc-CCCcCcccCccCCcccC--
Confidence 322334444333222233445554443222224567899999999999999998776654 4666543 233333222
Q ss_pred cccccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEE
Q 046746 420 NVTLQPNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVS 499 (561)
Q Consensus 420 ~~~~~~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~ 499 (561)
....+++++.++.|++|||+|+|.....||||||||+||||++|.|.|++...+.||+.||++||||.|+++||++|||+
T Consensus 397 ~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~ 476 (536)
T PLN02792 397 GMRLDTSVMGAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVA 476 (536)
T ss_pred CCccCceEEEcCCCCEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEE
Confidence 12346889999999999999999888899999999999999999999998767789999999999999999999999999
Q ss_pred eCCcceeeeecccchhhhccceEEEEEecCCcccccccCCCCccccccCccCC
Q 046746 500 MDNAGMWNLRSNIWERNYLGQQLYLSVRLHKRSLRDEYNMPDNALLCGIVANM 552 (561)
Q Consensus 500 adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~ 552 (561)
|||||.|+||||+..|+..||+++|.|.+++...+++++||++.+.||..+++
T Consensus 477 aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~Cg~~~~~ 529 (536)
T PLN02792 477 LDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLCGRASNK 529 (536)
T ss_pred eeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCccccccCC
Confidence 99999999999999999999999999999988887889999999999877664
No 6
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=1.9e-107 Score=870.38 Aligned_cols=508 Identities=47% Similarity=0.837 Sum_probs=403.8
Q ss_pred cCCCeEEEEEEEEEEEecCCCeeeeEEEECCcCCCCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCccC
Q 046746 24 AGSPTFFFTWNVTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTN 103 (561)
Q Consensus 24 a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q 103 (561)
|.+++|+|+|+|++...++||+.+.+++|||++|||+|++++||+|+|+|+|+|+++|+|||||++|.+++||||++++|
T Consensus 22 ~~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQ 101 (545)
T PLN02168 22 AFAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTN 101 (545)
T ss_pred ccccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCeEEEEEEecCceeeeeEecCchhhhccCceeEEEEecCCCCCCCCCCCCCCceEEEecceeecchHHhhhhhc
Q 046746 104 CPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPVPYNRFVEDDFTLLIGDWYTRSHVELGKQLD 183 (561)
Q Consensus 104 ~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~ 183 (561)
|||+||++|+|+|++++++||||||||.+.|+.+||+|+|||++++..+.++.. .+.|++|+++||++.+...+...+.
T Consensus 102 cpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~-~d~e~~l~l~Dw~~~~~~~~~~~~~ 180 (545)
T PLN02168 102 CPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPK-PDEEYDILIGDWFYADHTVMRASLD 180 (545)
T ss_pred CCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCc-ccceeeEEEEecCCCCHHHHHhhhh
Confidence 999999999999998778999999999999999999999999998765556544 5889999999999976555544444
Q ss_pred CCCCCCCCCeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEeecCcccceeeee
Q 046746 184 SGKLLGKPDGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYE 263 (561)
Q Consensus 184 ~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~~ 263 (561)
.+...+.++.+||||++. ..+.+++++|++|||||||+|....+.|+|+||+|+||++||.+++|..++
T Consensus 181 ~g~~~~~~d~~liNG~~~-----------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~ 249 (545)
T PLN02168 181 NGHSLPNPDGILFNGRGP-----------EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYS 249 (545)
T ss_pred cCCCCCCCCEEEEeccCC-----------CcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceee
Confidence 444445789999999974 127899999999999999999999999999999999999999999999999
Q ss_pred eEEEcccceEEEEEEeCCCC-C---ceEEEEEeeccCCcceeEEEEEecCCCCCCCCCCCCCCC--Cccccccccccccc
Q 046746 264 SLDVHVGQCFTVLVTANQDP-K---DYYLIASTRFTRTVITTTAIVRYSDSKGLASPDLPKAPV--GWDWSLNQFRSFRW 337 (561)
Q Consensus 264 ~v~l~pgeR~dv~v~~~~~~-g---~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~--~~~~~~~~~~~~~~ 337 (561)
+|.|++||||||+|++++++ | +|||++..........+.|+|+|.++......++|..|. +...+.+....+..
T Consensus 250 ~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~ 329 (545)
T PLN02168 250 SLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRM 329 (545)
T ss_pred EEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhh
Confidence 99999999999999998654 4 899999875444556788999998764322223333231 11111121112222
Q ss_pred cccccCCCCCCCCCCCcCCcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchhhhhhcCCCCcccccC-CCCCCCCc
Q 046746 338 NLTASAARPNPQGSFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEYYGIPEEVFKYN-VISDKPAD 416 (561)
Q Consensus 338 ~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~-~~~~~p~~ 416 (561)
.+.+....+.|..++.......++++.+.......+|..+|+|||.+|..|..|+|.+.++.+ .+.+..+ +...+|..
T Consensus 330 ~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~-~~~~~~~~~~~~p~~~ 408 (545)
T PLN02168 330 DLNVGAARSNPQGSYHYGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQL-NDTIIPGMFPVYPSNK 408 (545)
T ss_pred cCCCCCCCCCCcccccccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhccc-ccccccCCCccCCCcC
Confidence 233322223333222222233445554433211124567899999999999999887665543 2222222 22222211
Q ss_pred ccccccccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEE
Q 046746 417 EIENVTLQPNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAI 496 (561)
Q Consensus 417 ~~~~~~~~~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~i 496 (561)
....+++++.++.|++|||+|+|.....||||||||+||||++|.|.|++.....+|+.||++|||+.||++||++|
T Consensus 409 ---~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vI 485 (545)
T PLN02168 409 ---TPTLGTSVVDIHYKDFYHIVFQNPLFSLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAI 485 (545)
T ss_pred ---ccccCceEEEecCCCEEEEEEeCCCCCCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEE
Confidence 12235788999999999999999988899999999999999999999987766679999999999999999999999
Q ss_pred EEEeCCcceeeeecccchhhhccceEEEEEec-----CCcc-cccccCCCCcccccc
Q 046746 497 LVSMDNAGMWNLRSNIWERNYLGQQLYLSVRL-----HKRS-LRDEYNMPDNALLCG 547 (561)
Q Consensus 497 rf~adnpG~w~~HCHil~H~d~GMm~~~~V~~-----~~~~-~~~~~~~p~~~~~c~ 547 (561)
||+|||||.|+|||||+.|++.||+++++|.+ |+.. .+++++||+++++||
T Consensus 486 RF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~cg 542 (545)
T PLN02168 486 LIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRCG 542 (545)
T ss_pred EEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccccCCChhhcccc
Confidence 99999999999999999999999999998853 3322 344678999999997
No 7
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.5e-102 Score=825.58 Aligned_cols=525 Identities=45% Similarity=0.769 Sum_probs=457.8
Q ss_pred ccccCCCeEEEEEEEEEEEecCCCeeeeEEEECCcCCCCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCC
Q 046746 21 LVEAGSPTFFFTWNVTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVL 100 (561)
Q Consensus 21 ~~~a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~ 100 (561)
...|.++.+.|+|+++...+.++|.++.++++||++|||+|+|++||+|+|+|.|+++++++|||||++|..++|+||+.
T Consensus 21 ~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG~~ 100 (563)
T KOG1263|consen 21 FSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDGVY 100 (563)
T ss_pred HhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccCCc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999966
Q ss_pred ccCCccCCCCeEEEEEEecCceeeeeEecCchhhhccCceeEEEEecCCCCCCCCCCCCCCceEEEecceeec-chHHhh
Q 046746 101 GTNCPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPVPYNRFVEDDFTLLIGDWYTR-SHVELG 179 (561)
Q Consensus 101 ~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~~e~~l~~~d~~~~-~~~~~~ 179 (561)
++||||+||++|+|+|++++|.||||||+|.+.|+++|++|+|||+++...+.|++. +++|++|+++||+.+ ....+.
T Consensus 101 ~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~-pd~E~~ill~dW~~~~~~~~l~ 179 (563)
T KOG1263|consen 101 ITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPK-PDKEFTILLGDWYKNLNHKNLK 179 (563)
T ss_pred cccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCC-CCceeEEEeEeeccccCHHHHH
Confidence 679999999999999999889999999999999999999999999999877778876 799999999999996 777777
Q ss_pred hhhcCCCCCC-CCCeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEeecCcccc
Q 046746 180 KQLDSGKLLG-KPDGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVV 258 (561)
Q Consensus 180 ~~~~~~~~~~-~~~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~ 258 (561)
..++.++..+ .+|..+|||+.. +.|+| .+.++|++||+|||||+|+|....+.|+|++|+|+||++||.+++
T Consensus 180 ~~~~~~~~~p~~~D~~~iNg~~g-~~~~~------~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~ 252 (563)
T KOG1263|consen 180 NFLDRTGALPNPSDGVLINGRSG-FLYNC------TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTK 252 (563)
T ss_pred HhhccCCCCCCCCCceEECCCCC-cccCc------eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEe
Confidence 7766665544 389999999984 44554 589999999999999999999999999999999999999999999
Q ss_pred eeeeeeEEEcccceEEEEEEeCCCCCceEEEEEeeccCC----cceeEEEEEecCCCCCCCCCCC---CCC--CCccccc
Q 046746 259 QNEYESLDVHVGQCFTVLVTANQDPKDYYLIASTRFTRT----VITTTAIVRYSDSKGLASPDLP---KAP--VGWDWSL 329 (561)
Q Consensus 259 p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~----~~~~~ail~y~~~~~~~~~~~p---~~p--~~~~~~~ 329 (561)
|..+++|.|.||||+||+|++++.+++|+|++.+.+... ...+.++++|.++..+.+...| ..| .+..+++
T Consensus 253 p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~ 332 (563)
T KOG1263|consen 253 PFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWST 332 (563)
T ss_pred eeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhh
Confidence 999999999999999999999999999999999877655 6788999999985443322222 112 4556777
Q ss_pred cccccccccccccCCCCCCCCCCCcCCcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchhhhhhcCCCCcccccCC
Q 046746 330 NQFRSFRWNLTASAARPNPQGSFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEYYGIPEEVFKYNV 409 (561)
Q Consensus 330 ~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~ 409 (561)
.+.+.++..++...+.|+|++.+.....+..+.+.+.......+++.+++||+.+|..|+.|.+++.++...++.++.++
T Consensus 333 ~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~ 412 (563)
T KOG1263|consen 333 YQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDF 412 (563)
T ss_pred hhhhcccccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCcc
Confidence 88888888777777888888766555555556666655433446788999999999999999999888876667777665
Q ss_pred CCCCCCccc-ccccccceEEecCCCcEEEEEEEcCC---CCCCceeecCCceEEEeecCCCCCc--CCCCCCCCCCCCce
Q 046746 410 ISDKPADEI-ENVTLQPNVMDATYKAFMEIVLENRQ---NTMQSWILDGYAFFAVGMEPGTWNP--DKRKSYNLIDAVSR 483 (561)
Q Consensus 410 ~~~~p~~~~-~~~~~~~~~~~~~~g~~ve~vl~N~~---~~~HP~HlHG~~F~Vl~~~~g~~~~--~~~~~~n~~~P~~r 483 (561)
...++...+ ...+.+++++.++.++.|||+|+|.+ ...||||||||+||||+.|.|+|++ +....+|+.||+.|
T Consensus 413 p~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R 492 (563)
T KOG1263|consen 413 PDKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSR 492 (563)
T ss_pred CCCCccccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCccc
Confidence 554443322 22478999999999999999999988 5679999999999999999999999 43467999999999
Q ss_pred eEEEeCCCcEEEEEEEeCCcceeeeecccchhhhccceEEEEEecCCcccccccCCCCccccccCccCCC
Q 046746 484 YTIQVFPNCWAAILVSMDNAGMWNLRSNIWERNYLGQQLYLSVRLHKRSLRDEYNMPDNALLCGIVANMS 553 (561)
Q Consensus 484 DTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~~ 553 (561)
|||.|+||||++|||.|||||.|+||||+++|...||+++|.|.+++.+.+++.+||.+.++||.-++..
T Consensus 493 ~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~cg~~~~~~ 562 (563)
T KOG1263|consen 493 DTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKCGRASGIP 562 (563)
T ss_pred ceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccccccCCcC
Confidence 9999999999999999999999999999999999999999999999999888999999999999877653
No 8
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=8.9e-100 Score=821.47 Aligned_cols=507 Identities=26% Similarity=0.483 Sum_probs=387.6
Q ss_pred CCeEEEEEEEEEEEecCCCeeeeEEEECCcCCCCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCcc-CC
Q 046746 26 SPTFFFTWNVTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGT-NC 104 (561)
Q Consensus 26 ~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~-q~ 104 (561)
+.+|+|+|+|+++.+++||+++.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++++||++++ ||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~ 80 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQC 80 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999997 99
Q ss_pred ccCCCCeEEEEEEecCceeeeeEecCchhhhccCceeEEEEecCCCCCCCCCCCCCCceEEEecceeecchHHh-hhhhc
Q 046746 105 PIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPVPYNRFVEDDFTLLIGDWYTRSHVEL-GKQLD 183 (561)
Q Consensus 105 ~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~-~~~~~ 183 (561)
||+||++|+|+|++++++||||||||.+.|+ +||+|+|||+++...+.+++. .|+|++|+++||+++....+ .....
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~~~~~~~~-~d~e~~l~l~Dw~~~~~~~~~~~~~~ 158 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPGVPYPFPK-PDREVPIILGEWWNADVEAVINQANQ 158 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCCCCCCCCC-CCceEEEEecccccCCHHHHHHHHHh
Confidence 9999999999999867899999999998665 599999999997665556554 58899999999999765443 33333
Q ss_pred CCCCCCCCCeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEeecCcccceeeee
Q 046746 184 SGKLLGKPDGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYE 263 (561)
Q Consensus 184 ~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~~ 263 (561)
.+....+++++||||+..++ ++|.+ ...+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|+.++
T Consensus 159 ~~~~~~~~d~~liNG~~~~~-~~~~~--~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~ 235 (539)
T TIGR03389 159 TGGAPNVSDAYTINGHPGPL-YNCSS--KDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTK 235 (539)
T ss_pred cCCCCCccceEEECCCcCCC-CCCCC--CCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeC
Confidence 44444577999999997521 33322 1346899999999999999999999999999999999999999999999999
Q ss_pred eEEEcccceEEEEEEeCCCCCceEEEEEeeccC----CcceeEEEEEecCCCCCCCCCCCCCC--CCccccccccccccc
Q 046746 264 SLDVHVGQCFTVLVTANQDPKDYYLIASTRFTR----TVITTTAIVRYSDSKGLASPDLPKAP--VGWDWSLNQFRSFRW 337 (561)
Q Consensus 264 ~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~----~~~~~~ail~y~~~~~~~~~~~p~~p--~~~~~~~~~~~~~~~ 337 (561)
++.|++||||||+|++++.+|+||||+....+. ......|+|+|.++........+..+ .+..... ....
T Consensus 236 ~l~i~~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~----~~~~ 311 (539)
T TIGR03389 236 TIVIGPGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAAT----NFSN 311 (539)
T ss_pred eEEecCCCEEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhh----HHHh
Confidence 999999999999999998899999999764322 23567999999876432111111111 0000000 0000
Q ss_pred cccccCCCCCCCCCCCcCCcCcceEEEEcccee----------cc-CCeEEEEEcCeeccCCCCchhhhhhcCCCCcccc
Q 046746 338 NLTASAARPNPQGSFHYGGIPINRTIRLANTAH----------LV-NGKVRFAVNGVSYVNSETPLKFAEYYGIPEEVFK 406 (561)
Q Consensus 338 ~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~----------~~-~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~ 406 (561)
.+........|. ..+ ...++++.+..... .. .....|+|||++|..+..|+|++.+.++ .+.+.
T Consensus 312 ~l~~~~~~~~~~-~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~-~~~~~ 386 (539)
T TIGR03389 312 KLRSLNSAQYPA-NVP---VTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGI-SGVFT 386 (539)
T ss_pred hcccccccCCCC-CCC---CCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhccc-CCccc
Confidence 111100000000 000 11333333222110 01 2246799999999988899875544322 23222
Q ss_pred cCCCCCCCCc----c-----cccccccceEEecCCCcEEEEEEEcCC---CCCCceeecCCceEEEeecCCCCCcCC-CC
Q 046746 407 YNVISDKPAD----E-----IENVTLQPNVMDATYKAFMEIVLENRQ---NTMQSWILDGYAFFAVGMEPGTWNPDK-RK 473 (561)
Q Consensus 407 ~~~~~~~p~~----~-----~~~~~~~~~~~~~~~g~~ve~vl~N~~---~~~HP~HlHG~~F~Vl~~~~g~~~~~~-~~ 473 (561)
.+.....|.. + +-..+.+++++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+... ..
T Consensus 387 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~ 466 (539)
T TIGR03389 387 TDFPANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPA 466 (539)
T ss_pred cCCccCCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCcc
Confidence 2211111211 0 001234678899999999999999975 448999999999999999999887543 23
Q ss_pred CCCCCCCCceeEEEeCCCcEEEEEEEeCCcceeeeecccchhhhccceEEEEEecCCcccccccCCCCccccc
Q 046746 474 SYNLIDAVSRYTIQVFPNCWAAILVSMDNAGMWNLRSNIWERNYLGQQLYLSVRLHKRSLRDEYNMPDNALLC 546 (561)
Q Consensus 474 ~~n~~~P~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c 546 (561)
.+|+.||++|||+.||++||++|||++||||.|+|||||++|+..||+++|.+...+....+++++|++++.|
T Consensus 467 ~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 467 KFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred ccccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 6899999999999999999999999999999999999999999999999999877665556789999999999
No 9
>PLN02604 oxidoreductase
Probab=100.00 E-value=4.8e-98 Score=809.38 Aligned_cols=513 Identities=28% Similarity=0.496 Sum_probs=390.6
Q ss_pred ccccCCCeEEEEEEEEEEEecCCCeeeeEEEECCcCCCCeEEecCCCEEEEEEEeCC-CCCeeeeeCCccCCCCCCCCCC
Q 046746 21 LVEAGSPTFFFTWNVTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKL-DEPFLLTWPGIQHKKNSWQDGV 99 (561)
Q Consensus 21 ~~~a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l-~~~~~iH~HG~~~~~~~~~DGv 99 (561)
.+.|.+.+|+|+|+|+++..++||+.+.+|+|||++|||+|++++||+|+|+|+|++ +++++|||||+++.+++++||+
T Consensus 17 ~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~ 96 (566)
T PLN02604 17 FPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGT 96 (566)
T ss_pred hhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCC
Confidence 345667899999999999999999999999999999999999999999999999998 6899999999999999999999
Q ss_pred Ccc-CCccCCCCeEEEEEEecCceeeeeEecCchhhhccCceeEEEEecCCCCCCCCCCCCCCceEEEecceeecchHHh
Q 046746 100 LGT-NCPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPVPYNRFVEDDFTLLIGDWYTRSHVEL 178 (561)
Q Consensus 100 ~~~-q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~ 178 (561)
+++ ||+|+||++++|+|++ +++||||||||...|+.+||+|+|||+++.+++.++.. |.|.+|+|+||+++.....
T Consensus 97 ~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~--d~d~~l~l~Dw~~~~~~~~ 173 (566)
T PLN02604 97 EGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPFSY--DYDRSIILTDWYHKSTYEQ 173 (566)
T ss_pred CccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcccc--CcceEEEeeccccCCHHHH
Confidence 987 9999999999999996 68999999999999999999999999998655556654 8899999999999875443
Q ss_pred hhhhcCC--CCCCCCCeEEEcCccCCCCCCCCC---------------CCCCCceEEEEcCCEEEEEEEEcCCCceEEEE
Q 046746 179 GKQLDSG--KLLGKPDGVLINGKSGRLDYDSDG---------------KGDNEPLFTMKAGKVYKYRICNVGVKTSLNFR 241 (561)
Q Consensus 179 ~~~~~~~--~~~~~~~~~liNG~~~~~~~~~~~---------------~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~ 241 (561)
....... ....+++.++|||++. +.|+. ..+..+.+++++|++|||||||+|..+.+.|+
T Consensus 174 ~~~~~~~~~~~~~~~d~~liNG~G~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~s 250 (566)
T PLN02604 174 ALGLSSIPFDWVGEPQSLLIQGKGR---YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQ 250 (566)
T ss_pred HHhhccCCCccCCCCCceEEcCCCC---CCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccceEEEE
Confidence 2222111 1124679999999986 33320 12345689999999999999999999999999
Q ss_pred EeCcccEEEeecCcccceeeeeeEEEcccceEEEEEEeCCCCC-ceEEEEEeecc-CCcceeEEEEEecCCCCCCCCCCC
Q 046746 242 IQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTANQDPK-DYYLIASTRFT-RTVITTTAIVRYSDSKGLASPDLP 319 (561)
Q Consensus 242 i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g-~y~i~~~~~~~-~~~~~~~ail~y~~~~~~~~~~~p 319 (561)
|+||+|+|||+||.+++|.+++.|.|++||||||+|++++++| +||||+..... .+...++|||+|.+.......+ .
T Consensus 251 idgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~~~~~~~aIL~Y~~~~~~~~~~-~ 329 (566)
T PLN02604 251 IEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNNTTPPGLAIFNYYPNHPRRSPP-T 329 (566)
T ss_pred ECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCCCCcceeEEEEECCCCCCCCCC-C
Confidence 9999999999999999999999999999999999999998765 89999875432 2346789999998643211100 0
Q ss_pred CCCCCccccccccccccccccccCCCCCCCCCCCcCCcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchhhhhhcC
Q 046746 320 KAPVGWDWSLNQFRSFRWNLTASAARPNPQGSFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEYYG 399 (561)
Q Consensus 320 ~~p~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~ 399 (561)
..+....+.. ....+..... ....+.+.. ......++++.+.......++..+|+|||.+|..+..|+|++.+..
T Consensus 330 ~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~w~in~~~~~~p~~p~L~~~~~~ 404 (566)
T PLN02604 330 VPPSGPLWND-VEPRLNQSLA-IKARHGYIH---PPPLTSDRVIVLLNTQNEVNGYRRWSVNNVSFNLPHTPYLIALKEN 404 (566)
T ss_pred CCCCCCcccc-cchhhcchhc-ccccccCcC---CCCCCCCeEEEEeccccccCCeEEEEECcccCCCCCCchhHhhhhc
Confidence 0010000100 0000000000 000000000 0012245555553322222356789999999998888987654432
Q ss_pred CCCcccccCCCCC-CC--------CcccccccccceEEecCCCcEEEEEEEcCC------CCCCceeecCCceEEEeecC
Q 046746 400 IPEEVFKYNVISD-KP--------ADEIENVTLQPNVMDATYKAFMEIVLENRQ------NTMQSWILDGYAFFAVGMEP 464 (561)
Q Consensus 400 ~~~~~~~~~~~~~-~p--------~~~~~~~~~~~~~~~~~~g~~ve~vl~N~~------~~~HP~HlHG~~F~Vl~~~~ 464 (561)
..++|+.+.... .+ ..++...+.+.+++.++.|++||++|+|.+ ...||||||||+||||++|.
T Consensus 405 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~ 483 (566)
T PLN02604 405 -LTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGE 483 (566)
T ss_pred -CCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEecC
Confidence 245554221100 00 001122345678899999999999999975 45799999999999999999
Q ss_pred CCCCcCC-CCCCCCCCCCceeEEEeCCCcEEEEEEEeCCcceeeeecccchhhhccceEEEEEecCCcccccccCCCCcc
Q 046746 465 GTWNPDK-RKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAGMWNLRSNIWERNYLGQQLYLSVRLHKRSLRDEYNMPDNA 543 (561)
Q Consensus 465 g~~~~~~-~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~ 543 (561)
|.|++.. ...+|+.||++|||+.|+++||++|||+|||||.|+|||||++|+..||+++|.+. ++ +.+++|.++
T Consensus 484 G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~-~~----~~~~~p~~~ 558 (566)
T PLN02604 484 GKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG-IE----RVGKLPSSI 558 (566)
T ss_pred CCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeC-hh----hccCCCCCc
Confidence 9887643 34689999999999999999999999999999999999999999999999999754 32 467889999
Q ss_pred ccccCccC
Q 046746 544 LLCGIVAN 551 (561)
Q Consensus 544 ~~c~~~~~ 551 (561)
++|+..++
T Consensus 559 ~~C~~~~~ 566 (566)
T PLN02604 559 MGCGESKG 566 (566)
T ss_pred CccccCCC
Confidence 99986654
No 10
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=2.6e-97 Score=801.67 Aligned_cols=506 Identities=27% Similarity=0.527 Sum_probs=380.3
Q ss_pred cCCCeEEEEEEEEEEEecCCCeeeeEEEECCcCCCCeEEecCCCEEEEEEEeCCC-CCeeeeeCCccCCCCCCCCCCCcc
Q 046746 24 AGSPTFFFTWNVTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLD-EPFLLTWPGIQHKKNSWQDGVLGT 102 (561)
Q Consensus 24 a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~ 102 (561)
|.+++++|+|++++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+ ++++|||||++|.+++|+||++++
T Consensus 19 ~~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gv 98 (574)
T PLN02191 19 ASAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGV 98 (574)
T ss_pred hccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCcc
Confidence 3467899999999999999999999999999999999999999999999999997 789999999999999999999997
Q ss_pred -CCccCCCCeEEEEEEecCceeeeeEecCchhhhccCceeEEEEecCCCCCCCCCCCCCCceEEEecceeecchHHhhhh
Q 046746 103 -NCPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPVPYNRFVEDDFTLLIGDWYTRSHVELGKQ 181 (561)
Q Consensus 103 -q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~ 181 (561)
||||+||++|+|+|++ +++||||||||.+.|+.+||+|+|||+++...+.++.. |+|++|+|+||++.........
T Consensus 99 tq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~~~--d~e~~l~l~Dw~~~~~~~~~~~ 175 (574)
T PLN02191 99 TQCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERLRY--DGEFNLLLSDWWHESIPSQELG 175 (574)
T ss_pred ccCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCCCC--CeeEEEeeeccccCChHHHHHh
Confidence 9999999999999997 68999999999999999999999999975443333333 8999999999999753322111
Q ss_pred hcC--CCCCCCCCeEEEcCccCCCCCCCC-------C-----------CCCCCceEEEEcCCEEEEEEEEcCCCceEEEE
Q 046746 182 LDS--GKLLGKPDGVLINGKSGRLDYDSD-------G-----------KGDNEPLFTMKAGKVYKYRICNVGVKTSLNFR 241 (561)
Q Consensus 182 ~~~--~~~~~~~~~~liNG~~~~~~~~~~-------~-----------~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~ 241 (561)
+.. .....+++.+||||++. +.|+ + ..+....++|++|++|||||||+|+...+.|+
T Consensus 176 ~~~~~~~~~~~~d~~liNG~g~---~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~ 252 (574)
T PLN02191 176 LSSKPMRWIGEAQSILINGRGQ---FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLA 252 (574)
T ss_pred hccCCCCcCCCCCceEECCCCC---CCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEE
Confidence 111 11224678999999986 3331 1 01233479999999999999999999999999
Q ss_pred EeCcccEEEeecCcccceeeeeeEEEcccceEEEEEEeCCCC-CceEEEEEeeccC-CcceeEEEEEecCCCCCC--CCC
Q 046746 242 IQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTANQDP-KDYYLIASTRFTR-TVITTTAIVRYSDSKGLA--SPD 317 (561)
Q Consensus 242 i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~-g~y~i~~~~~~~~-~~~~~~ail~y~~~~~~~--~~~ 317 (561)
|+||+|+|||+||.+++|+.+++|.|++||||||+|++++++ ++||||+...... ......|||+|.+..... +.+
T Consensus 253 idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~ 332 (574)
T PLN02191 253 VQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKPNTTQALTILNYVTAPASKLPSSP 332 (574)
T ss_pred ECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCCCCCCceEEEEECCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999876 5899999754322 123457999998754321 111
Q ss_pred CCCCCCCccccccccccccccccccCCCCCCCCCCCcCCcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchhhhhh
Q 046746 318 LPKAPVGWDWSLNQFRSFRWNLTASAARPNPQGSFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEY 397 (561)
Q Consensus 318 ~p~~p~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~ 397 (561)
.|..|...+. .........+......+.+.. ...++.+.+.... ...+..+|+|||.+|..+..|+|++.+
T Consensus 333 ~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~p~------~~~~~~~~~~~~~-~~~~~~~~~~n~~s~~~p~~P~L~~~~ 403 (574)
T PLN02191 333 PPVTPRWDDF--ERSKNFSKKIFSAMGSPSPPK------KYRKRLILLNTQN-LIDGYTKWAINNVSLVTPATPYLGSVK 403 (574)
T ss_pred CCCCCccccc--chhhcccccccccccCCCCCC------cccceEEEecccc-eeCCeEEEEECcccCcCCCcchHHHHh
Confidence 1111100000 000111111100000011110 1123444443211 123456899999999988999887654
Q ss_pred cCCCCcccccCCCCC---------CCCcccccccccceEEecCCCcEEEEEEEcCC------CCCCceeecCCceEEEee
Q 046746 398 YGIPEEVFKYNVISD---------KPADEIENVTLQPNVMDATYKAFMEIVLENRQ------NTMQSWILDGYAFFAVGM 462 (561)
Q Consensus 398 ~~~~~~~~~~~~~~~---------~p~~~~~~~~~~~~~~~~~~g~~ve~vl~N~~------~~~HP~HlHG~~F~Vl~~ 462 (561)
.+. .+.|+.+.... .+..+ ...+.+++++.++.|++|||+|+|.+ ...||||||||+||||++
T Consensus 404 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~ 481 (574)
T PLN02191 404 YNL-KLGFNRKSPPRSYRMDYDIMNPPPF-PNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGY 481 (574)
T ss_pred hcc-CcccccCCCcccccccccccCCCcc-ccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEe
Confidence 432 23332211100 00000 01234677899999999999999985 678999999999999999
Q ss_pred cCCCCCcCC-CCCCCCCCCCceeEEEeCCCcEEEEEEEeCCcceeeeecccchhhhccceEEEEEecCCcccccccCCCC
Q 046746 463 EPGTWNPDK-RKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAGMWNLRSNIWERNYLGQQLYLSVRLHKRSLRDEYNMPD 541 (561)
Q Consensus 463 ~~g~~~~~~-~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~ 541 (561)
|.|.|++.. ...+|+.||++|||+.||++||++|||++||||.|+|||||++|...||.++|. +.++ +++++|+
T Consensus 482 G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~-e~~~----~~~~~p~ 556 (574)
T PLN02191 482 GDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFA-EGLN----RIGKIPD 556 (574)
T ss_pred cCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEe-cChh----hccCCCc
Confidence 999998632 246899999999999999999999999999999999999999999999999995 3332 3556889
Q ss_pred ccccccCccC
Q 046746 542 NALLCGIVAN 551 (561)
Q Consensus 542 ~~~~c~~~~~ 551 (561)
+++.|+.+++
T Consensus 557 ~~~~C~~~~~ 566 (574)
T PLN02191 557 EALGCGLTKQ 566 (574)
T ss_pred chhhhhcccc
Confidence 9999986544
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=1.4e-96 Score=795.94 Aligned_cols=499 Identities=29% Similarity=0.560 Sum_probs=379.7
Q ss_pred eEEEEEEEEEEEecCCCeeeeEEEECCcCCCCeEEecCCCEEEEEEEeCCC-CCeeeeeCCccCCCCCCCCCCCcc-CCc
Q 046746 28 TFFFTWNVTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLD-EPFLLTWPGIQHKKNSWQDGVLGT-NCP 105 (561)
Q Consensus 28 ~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~-q~~ 105 (561)
+|+|+|+|+++.+++||+.+.+|+|||++|||+|++++||+|+|+|+|+|. ++++|||||++|.+++||||++++ ||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 489999999999999999999999999999999999999999999999995 889999999999999999999987 999
Q ss_pred cCCCCeEEEEEEecCceeeeeEecCchhhhccCceeEEEEecCCCCCCCCCCCCCCceEEEecceeecchHHhhhhhcC-
Q 046746 106 IPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPVPYNRFVEDDFTLLIGDWYTRSHVELGKQLDS- 184 (561)
Q Consensus 106 i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~- 184 (561)
|+||++|+|+|++ +++||||||||...|+.+||+|+|||+++..++.++.. |+|++|+|+||+++........+..
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~--d~e~~l~l~Dw~~~~~~~~~~~~~~~ 157 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPFHY--DGEFNLLLSDWWHKSIHEQEVGLSSK 157 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCccc--cceEEEEeecccCCCHHHHHhhcccC
Confidence 9999999999997 68999999999999999999999999998655555554 8899999999999865433221111
Q ss_pred C-CCCCCCCeEEEcCccCCCCCCCCC-----------------CCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcc
Q 046746 185 G-KLLGKPDGVLINGKSGRLDYDSDG-----------------KGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHT 246 (561)
Q Consensus 185 ~-~~~~~~~~~liNG~~~~~~~~~~~-----------------~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~ 246 (561)
. ....+++.+||||++. ++|.. ..+....++|++|++|||||||+|....+.|+|+||+
T Consensus 158 ~~~~~~~~d~~liNG~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~ 234 (541)
T TIGR03388 158 PMRWIGEPQSLLINGRGQ---FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHK 234 (541)
T ss_pred CCcCCCCCcceEECCCCC---CCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCE
Confidence 1 1124678999999986 33310 1223356899999999999999999999999999999
Q ss_pred cEEEeecCcccceeeeeeEEEcccceEEEEEEeCCCC-CceEEEEEeecc-CCcceeEEEEEecCCCCCCC--CCCCCCC
Q 046746 247 MKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTANQDP-KDYYLIASTRFT-RTVITTTAIVRYSDSKGLAS--PDLPKAP 322 (561)
Q Consensus 247 ~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~-g~y~i~~~~~~~-~~~~~~~ail~y~~~~~~~~--~~~p~~p 322 (561)
|+|||+||++++|..+++|.|++||||||+|++++.+ |+||||+..... .+....+|||+|.+...... .+.|..|
T Consensus 235 ~~VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p 314 (541)
T TIGR03388 235 LTVVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTP 314 (541)
T ss_pred EEEEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCCCCccEEEEEEECCCCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999766 589999976533 22345789999987543210 1111112
Q ss_pred CCccccccccccccccccccCCCCCCCCCCCcCCcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchhhhhhcCCCC
Q 046746 323 VGWDWSLNQFRSFRWNLTASAARPNPQGSFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEYYGIPE 402 (561)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~ 402 (561)
...+.. ........+......+.+. ...++++.+.......++..+|+|||.+|..|..|+|.+.+++. .
T Consensus 315 ~~~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~-~ 384 (541)
T TIGR03388 315 AWDDFD--RSKAFSLAIKAAMGSPKPP-------ETSDRRIVLLNTQNKINGYTKWAINNVSLTLPHTPYLGSLKYNL-L 384 (541)
T ss_pred Cccccc--hhhccchhhhccccCCCCC-------CCCCcEEEEeccCcccCceEEEEECcccCCCCCccHHHHHhhcC-C
Confidence 100000 0000000000000011111 12345544322211124556799999999888899887654432 2
Q ss_pred cccccCCCC-CCC-----Ccc--cccccccceEEecCCCcEEEEEEEcCC------CCCCceeecCCceEEEeecCCCCC
Q 046746 403 EVFKYNVIS-DKP-----ADE--IENVTLQPNVMDATYKAFMEIVLENRQ------NTMQSWILDGYAFFAVGMEPGTWN 468 (561)
Q Consensus 403 ~~~~~~~~~-~~p-----~~~--~~~~~~~~~~~~~~~g~~ve~vl~N~~------~~~HP~HlHG~~F~Vl~~~~g~~~ 468 (561)
++|+.+... ..+ ..+ +...+.+++++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~ 464 (541)
T TIGR03388 385 NAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFR 464 (541)
T ss_pred ccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCC
Confidence 223211100 000 000 112345678899999999999999974 457999999999999999999887
Q ss_pred cC-CCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCcceeeeecccchhhhccceEEEEEecCCcccccccCCCCcccccc
Q 046746 469 PD-KRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAGMWNLRSNIWERNYLGQQLYLSVRLHKRSLRDEYNMPDNALLCG 547 (561)
Q Consensus 469 ~~-~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~ 547 (561)
.. ....+|+.||++|||+.|+++||++|||++||||.|+|||||++|+..||+++|.+. ++ +.+++|+++++||
T Consensus 465 ~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-~~----~~~~~P~~~~~C~ 539 (541)
T TIGR03388 465 PGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-VE----KVGKLPKEALGCG 539 (541)
T ss_pred cccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-cc----ccCCCCccccCCC
Confidence 53 234689999999999999999999999999999999999999999999999999654 22 4667899999997
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=2.9e-94 Score=775.47 Aligned_cols=488 Identities=23% Similarity=0.414 Sum_probs=370.7
Q ss_pred EEEEEEEEEEEecCCCeeeeEEEECCcCCCCeEEecCCCEEEEEEEeCCC-CCeeeeeCCccCCCCCCCCCCCcc-CCcc
Q 046746 29 FFFTWNVTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLD-EPFLLTWPGIQHKKNSWQDGVLGT-NCPI 106 (561)
Q Consensus 29 ~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~-q~~i 106 (561)
-.|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|+|+ ++++|||||++|.+++++||+|++ ||||
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 36899999999999999999999999999999999999999999999996 899999999999999999999998 9999
Q ss_pred CCCCeEEEEEEec-CceeeeeEecCchhhhccCceeEEEEecCCCCCCCCCCCCCCceEEEecceeecchHHhhhhhcCC
Q 046746 107 PPGKNYTYYLQVK-DQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPVPYNRFVEDDFTLLIGDWYTRSHVELGKQLDSG 185 (561)
Q Consensus 107 ~PG~~~~Y~f~~~-~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~ 185 (561)
+||++|+|+|+++ +++||||||||.+.|+. ||+|+|||+++... +++. |+|++|+|+||+++....+...+..+
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~~~~--~~~~--d~e~~l~l~Dw~~~~~~~~~~~~~~~ 163 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDCEPP--PYKY--DDERILLVSDFFSATDEEIEQGLLST 163 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhh-cceeEEEEccCCcc--CCCc--cCcEEEEEeCCCCCCHHHHHhhhhcc
Confidence 9999999999974 58999999999999986 59999999986533 3433 88999999999998776654322221
Q ss_pred C--CCCCCCeEEEcCccCCCCCCC---CCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcc-cEEEeecCcccce
Q 046746 186 K--LLGKPDGVLINGKSGRLDYDS---DGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHT-MKLVEMEGSHVVQ 259 (561)
Q Consensus 186 ~--~~~~~~~~liNG~~~~~~~~~---~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~-~~via~DG~~~~p 259 (561)
. ...+++++||||+....++.. ....|..+.++|++|++|||||||+|..+.+.|+|+||+ |+|||+||.+++|
T Consensus 164 ~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P 243 (538)
T TIGR03390 164 PFTWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKP 243 (538)
T ss_pred CCccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCc
Confidence 1 124578999999975322111 112456789999999999999999999999999999999 9999999999999
Q ss_pred eeeeeEEEcccceEEEEEEeCCC-------CCceEEEEEeeccCCcceeEEEEEecCCCCCCCCCCCCCCC-Cccccccc
Q 046746 260 NEYESLDVHVGQCFTVLVTANQD-------PKDYYLIASTRFTRTVITTTAIVRYSDSKGLASPDLPKAPV-GWDWSLNQ 331 (561)
Q Consensus 260 ~~~~~v~l~pgeR~dv~v~~~~~-------~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~ 331 (561)
..+++|.|++||||||+|++++. +|+||||+.....++.....|||+|.++........|..+. ........
T Consensus 244 ~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~ 323 (538)
T TIGR03390 244 AKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYD 323 (538)
T ss_pred eEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchh
Confidence 99999999999999999999965 48999999865444455689999998654322111121110 00000000
Q ss_pred cccccccccccCCCCCCCCCCCcCCcCcceEEEEccceec--cCCeEEEEEcCeeccC--CCCchhhhhhcCCCCccccc
Q 046746 332 FRSFRWNLTASAARPNPQGSFHYGGIPINRTIRLANTAHL--VNGKVRFAVNGVSYVN--SETPLKFAEYYGIPEEVFKY 407 (561)
Q Consensus 332 ~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~iNg~~f~~--~~~P~l~~~~~~~~~~~~~~ 407 (561)
+.+ ..+.+......+ .++. ....++++.+...... .++..+|+|||++|.. +..|+|...+.+.......
T Consensus 324 ~~~--~~l~pl~~~~~~--~~~~-~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~- 397 (538)
T TIGR03390 324 WLE--YELEPLSEENNQ--DFPT-LDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPN- 397 (538)
T ss_pred hhh--eeeEecCccccC--CCCC-CCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCC-
Confidence 111 112211110000 0000 1235667666654321 2466889999999985 6789876543221000000
Q ss_pred CCCCCCCCcccccccccceEEecCCCcEEEEEEEcCC--------CCCCceeecCCceEEEeecCCCCCcCC-CCCCCCC
Q 046746 408 NVISDKPADEIENVTLQPNVMDATYKAFMEIVLENRQ--------NTMQSWILDGYAFFAVGMEPGTWNPDK-RKSYNLI 478 (561)
Q Consensus 408 ~~~~~~p~~~~~~~~~~~~~~~~~~g~~ve~vl~N~~--------~~~HP~HlHG~~F~Vl~~~~g~~~~~~-~~~~n~~ 478 (561)
..+.........+++++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|++.. ...+|+.
T Consensus 398 ----~~~~~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~ 473 (538)
T TIGR03390 398 ----YTAALANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENY 473 (538)
T ss_pred ----cccccccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccC
Confidence 000000001224567888999999999999974 578999999999999999999998643 2357889
Q ss_pred CCCceeEEEeC----------CCcEEEEEEEeCCcceeeeecccchhhhccceEEEEEecCCc
Q 046746 479 DAVSRYTIQVF----------PNCWAAILVSMDNAGMWNLRSNIWERNYLGQQLYLSVRLHKR 531 (561)
Q Consensus 479 ~P~~rDTv~vp----------~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~ 531 (561)
||++|||+.|| +++|++|||++||||.|+|||||++|...||+++|.|.+.++
T Consensus 474 nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~ 536 (538)
T TIGR03390 474 TPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDAED 536 (538)
T ss_pred CCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCChHH
Confidence 99999999996 789999999999999999999999999999999999977653
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=5.4e-79 Score=655.67 Aligned_cols=427 Identities=22% Similarity=0.321 Sum_probs=318.8
Q ss_pred EEEEEEEEEEEecCCCeeeeEEEECCcCCCCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCcc-CCccC
Q 046746 29 FFFTWNVTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGT-NCPIP 107 (561)
Q Consensus 29 ~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~-q~~i~ 107 (561)
++|+|++++..+.++|+.+.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||+++. +.+||+|++ ||+|+
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~--~~~DGvP~vt~~~I~ 123 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLP--FQMDGVPGVSFAGIA 123 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCC--ccccCCCcccccccC
Confidence 799999999999999999999999999999999999999999999999999999999999874 679999998 99999
Q ss_pred CCCeEEEEEEecCceeeeeEecCchhhhccCceeEEEEecCCCCCCCCCCCCCCceEEEecceeecchHHhhhhhc----
Q 046746 108 PGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPVPYNRFVEDDFTLLIGDWYTRSHVELGKQLD---- 183 (561)
Q Consensus 108 PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~---- 183 (561)
||++|+|+|++ .++||||||||...|+.+||+|+|||+++..++..+ |+|++|+|+||++.....+...+.
T Consensus 124 PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~~~----D~E~vl~L~Dw~~~~p~~i~~~l~~~~~ 198 (587)
T TIGR01480 124 PGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPVRA----DREHVVLLSDWTDLDPAALFRKLKVMAG 198 (587)
T ss_pred CCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccCCC----CceEEEEeeecccCCHHHHHHhhhcccc
Confidence 99999999997 579999999999999999999999999865443333 899999999999765433211100
Q ss_pred ------------------CCC---------C-------C------CCCCeEEEcCccCCCCCCCCCCCCCCceEEEEcCC
Q 046746 184 ------------------SGK---------L-------L------GKPDGVLINGKSGRLDYDSDGKGDNEPLFTMKAGK 223 (561)
Q Consensus 184 ------------------~~~---------~-------~------~~~~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~ 223 (561)
.|. . . .....+||||+.. ...+++.+++|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~----------~~~~~~~v~~G~ 268 (587)
T TIGR01480 199 HDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTP----------AGNWTGLFRPGE 268 (587)
T ss_pred cccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccC----------CCCceEEECCCC
Confidence 010 0 0 0112478999975 123679999999
Q ss_pred EEEEEEEEcCCCceEEEEEeCcccEEEeecCcccceeeeeeEEEcccceEEEEEEeCCCCCceEEEEEeeccCCcceeEE
Q 046746 224 VYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTANQDPKDYYLIASTRFTRTVITTTA 303 (561)
Q Consensus 224 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~a 303 (561)
+|||||||+|+.+.+.|+|+||+|+||++||++++|..++++.|++||||||+|+.+ ..|.|+|++..... ....++
T Consensus 269 rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~-~~g~~~i~a~~~~~--~~~~~~ 345 (587)
T TIGR01480 269 KVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPT-GDDAFTIFAQDSDR--TGYARG 345 (587)
T ss_pred EEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecC-CCceEEEEEEecCC--CceEEE
Confidence 999999999999999999999999999999999999999999999999999999987 56899999975432 235677
Q ss_pred EEEecCCCCCCCCCCCCCC----CCccc-c---------cccc----ccc----------c---ccccc--cC-------
Q 046746 304 IVRYSDSKGLASPDLPKAP----VGWDW-S---------LNQF----RSF----------R---WNLTA--SA------- 343 (561)
Q Consensus 304 il~y~~~~~~~~~~~p~~p----~~~~~-~---------~~~~----~~~----------~---~~l~~--~~------- 343 (561)
+|++.+......++++..| .+..- . +... .+. . ..... ..
T Consensus 346 ~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (587)
T TIGR01480 346 TLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLN 425 (587)
T ss_pred EEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCcccccCC
Confidence 8887653211111111111 01000 0 0000 000 0 00000 00
Q ss_pred -----CCCCCCCC--------------------CC-----cCCcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchh
Q 046746 344 -----ARPNPQGS--------------------FH-----YGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLK 393 (561)
Q Consensus 344 -----~~p~p~~~--------------------~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l 393 (561)
....|... +. ......+|++.+.... ......|+|||..|.+. .
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g--~m~~~~wtiNG~~~~~~-~--- 499 (587)
T TIGR01480 426 PLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTG--NMERFAWSFDGEAFGLK-T--- 499 (587)
T ss_pred ccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcC--CCceeEEEECCccCCCC-C---
Confidence 00000000 00 0011234444443311 11245699999876421 1
Q ss_pred hhhhcCCCCcccccCCCCCCCCcccccccccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCC
Q 046746 394 FAEYYGIPEEVFKYNVISDKPADEIENVTLQPNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRK 473 (561)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~ 473 (561)
.+.++.|++|+|+|.|.+.+.|||||||+.|+|+..+ |.+
T Consensus 500 ---------------------------------pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~-G~~------ 539 (587)
T TIGR01480 500 ---------------------------------PLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQ-GEF------ 539 (587)
T ss_pred ---------------------------------ceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCC-Ccc------
Confidence 2457899999999999999999999999999998753 321
Q ss_pred CCCCCCCCceeEEEeCCCcEEEEEEEeCCcceeeeecccchhhhccceEEEEEe
Q 046746 474 SYNLIDAVSRYTIQVFPNCWAAILVSMDNAGMWNLRSNIWERNYLGQQLYLSVR 527 (561)
Q Consensus 474 ~~n~~~P~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~ 527 (561)
+.++||+.|+|++++.++|.+||||.|+||||++.|++.|||..++|.
T Consensus 540 ------~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 540 ------QVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred ------cccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 357899999999999999999999999999999999999999999873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=1.1e-77 Score=641.42 Aligned_cols=412 Identities=20% Similarity=0.235 Sum_probs=302.2
Q ss_pred eEEEEEEEEEEEecCCCe-eeeEEEECCcCCCCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCccCCcc
Q 046746 28 TFFFTWNVTYGTISPLGI-PQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTNCPI 106 (561)
Q Consensus 28 ~~~~~l~~~~~~~~~dG~-~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i 106 (561)
...|+|+++++..+++|. ...+|+|||++|||+|++++||+|+|+|+|+|+++++|||||+++.+ .+||+| ||+|
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~--~~DG~p--q~~I 120 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPG--EVDGGP--QGII 120 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCC--ccCCCC--CCCC
Confidence 456999999999999854 45699999999999999999999999999999999999999999864 599998 8999
Q ss_pred CCCCeEEEEEEecCceeeeeEecCc----hhhhccCceeEEEEecCCCCCCCCCC-CCCCceEEEecceeecchHHhhhh
Q 046746 107 PPGKNYTYYLQVKDQIGSYIYHPST----GFHRAAGGFGGLCIHSRSVVPVPYNR-FVEDDFTLLIGDWYTRSHVELGKQ 181 (561)
Q Consensus 107 ~PG~~~~Y~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~~-~~~~e~~l~~~d~~~~~~~~~~~~ 181 (561)
.||++|+|+|++++++||||||||. ..|+++||+|+|||+++.+.+.+++. ++.+|++|+++||+++.++++...
T Consensus 121 ~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~ 200 (523)
T PRK10965 121 APGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQ 200 (523)
T ss_pred CCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceecc
Confidence 9999999999986568999999997 59999999999999997654322221 134699999999999876654332
Q ss_pred hcCC--CCCCCCCeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEE-eCcccEEEeecCccc-
Q 046746 182 LDSG--KLLGKPDGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRI-QGHTMKLVEMEGSHV- 257 (561)
Q Consensus 182 ~~~~--~~~~~~~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~~- 257 (561)
.+.. .....++.++|||+.+ |.++++ +++|||||||+|+.+.+.|++ ++|+|+|||.||+++
T Consensus 201 ~~~~~~~~g~~gd~~lVNG~~~-------------p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~ 266 (523)
T PRK10965 201 LDVMTAAVGWFGDTLLTNGAIY-------------PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLA 266 (523)
T ss_pred ccccccccCccCCeEEECCccc-------------ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCccc
Confidence 2211 1123578999999987 888885 579999999999999999998 799999999999986
Q ss_pred ceeeeeeEEEcccceEEEEEEeCCCCCceEEEEEeeccC-----CcceeEEEEEecCCCCCCCCCCCCCCCCcccccccc
Q 046746 258 VQNEYESLDVHVGQCFTVLVTANQDPKDYYLIASTRFTR-----TVITTTAIVRYSDSKGLASPDLPKAPVGWDWSLNQF 332 (561)
Q Consensus 258 ~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~-----~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~ 332 (561)
+|..+++|.|+|||||||+|+++ +.++|.+........ .......++++.........++|......
T Consensus 267 ~P~~v~~l~lapGeR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~------- 338 (523)
T PRK10965 267 EPVKVSELPILMGERFEVLVDTS-DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLASL------- 338 (523)
T ss_pred CccEeCeEEECccceEEEEEEcC-CCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhhccC-------
Confidence 79999999999999999999998 568898887643211 01112344555432211111222210000
Q ss_pred ccccccccccCCCCCCCCCCCcCCcCcceEEEEccc-------------------------------e--------ec--
Q 046746 333 RSFRWNLTASAARPNPQGSFHYGGIPINRTIRLANT-------------------------------A--------HL-- 371 (561)
Q Consensus 333 ~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~-------------------------------~--------~~-- 371 (561)
.+.+.+.. ...|++.+... . ..
T Consensus 339 ----------~~~~~~~~-------~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (523)
T PRK10965 339 ----------PALPSLEG-------LTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGA 401 (523)
T ss_pred ----------CCCCcccc-------cceeEEEEeeccccchhhhhhcccccccccccccccccccccccccccccccccc
Confidence 00000000 00111111000 0 00
Q ss_pred -cCCe-----EEEEEcCeeccCCCCchhhhhhcCCCCcccccCCCCCCCCcccccccccceEEecCCCcEEEEEEEcCCC
Q 046746 372 -VNGK-----VRFAVNGVSYVNSETPLKFAEYYGIPEEVFKYNVISDKPADEIENVTLQPNVMDATYKAFMEIVLENRQN 445 (561)
Q Consensus 372 -~~g~-----~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~ve~vl~N~~~ 445 (561)
..+. ..|+|||++|... .| .+.++.|++++|.|.|.+.
T Consensus 402 ~~~~~~~~~~~~~~ING~~~~~~-~~-----------------------------------~~~~~~G~~e~w~i~N~~~ 445 (523)
T PRK10965 402 ADAGPAFDFHHANKINGKAFDMN-KP-----------------------------------MFAAKKGQYERWVISGVGD 445 (523)
T ss_pred ccccccccccccccCCCeECCCC-Cc-----------------------------------ceecCCCCEEEEEEEeCCC
Confidence 0000 1146777776421 11 2457899999999999884
Q ss_pred -CCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEe----CCcceeeeecccchhhhccc
Q 046746 446 -TMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSM----DNAGMWNLRSNIWERNYLGQ 520 (561)
Q Consensus 446 -~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~a----dnpG~w~~HCHil~H~d~GM 520 (561)
+.|||||||++||||+++.... ....+.|||||.|++ +.+.|++++ |++|.||||||||+|||.||
T Consensus 446 ~~~Hp~HlHg~~F~Vl~~~g~~~--------~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GM 516 (523)
T PRK10965 446 MMLHPFHIHGTQFRILSENGKPP--------AAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGM 516 (523)
T ss_pred CCccCeEEeCcEEEEEEecCCCC--------CccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCc
Confidence 6899999999999999964221 122468999999988 666666555 46789999999999999999
Q ss_pred eEEEEEe
Q 046746 521 QLYLSVR 527 (561)
Q Consensus 521 m~~~~V~ 527 (561)
|..|.|.
T Consensus 517 M~~~~V~ 523 (523)
T PRK10965 517 MLGFTVS 523 (523)
T ss_pred cceeEeC
Confidence 9999984
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=1.1e-75 Score=621.05 Aligned_cols=400 Identities=17% Similarity=0.185 Sum_probs=295.0
Q ss_pred EEEEEEEEEEecCC-CeeeeEEEECCcCCCCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCccCCccCC
Q 046746 30 FFTWNVTYGTISPL-GIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTNCPIPP 108 (561)
Q Consensus 30 ~~~l~~~~~~~~~d-G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~P 108 (561)
.++|+++.+..+++ |..+.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||+++... .+||++ ++|.|
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~---~~I~P 122 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA---RMMSP 122 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc---ccCCC
Confidence 37999999999888 56789999999999999999999999999999999999999999998764 577765 88999
Q ss_pred CCeEEEEEEecCceeeeeEecCch----hhhccCceeEEEEecCCCCCCCCCC-CCCCceEEEecceeecchHHhhhhhc
Q 046746 109 GKNYTYYLQVKDQIGSYIYHPSTG----FHRAAGGFGGLCIHSRSVVPVPYNR-FVEDDFTLLIGDWYTRSHVELGKQLD 183 (561)
Q Consensus 109 G~~~~Y~f~~~~~~Gt~wYH~H~~----~q~~~Gl~G~liV~~~~~~~~~~~~-~~~~e~~l~~~d~~~~~~~~~~~~~~ 183 (561)
|++|+|+|++.+++||||||||.+ .|+.+||+|+|||+++.+++.+++. +..+|++|+++||+++........ .
T Consensus 123 G~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~-~ 201 (471)
T PRK10883 123 NADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN-E 201 (471)
T ss_pred CCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc-c
Confidence 999999999766799999999975 5999999999999997654333221 134599999999999765443211 1
Q ss_pred CCCCCCCCCeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEE-eCcccEEEeecCccc-ceee
Q 046746 184 SGKLLGKPDGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRI-QGHTMKLVEMEGSHV-VQNE 261 (561)
Q Consensus 184 ~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~~-~p~~ 261 (561)
.......++.+||||+.. |.++|++ ++|||||||+|+.+.+.|+| ++|+|+|||.||+++ +|..
T Consensus 202 ~~~~g~~gd~~lvNG~~~-------------p~~~v~~-~~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~ 267 (471)
T PRK10883 202 PGSGGFVGDTLLVNGVQS-------------PYVEVSR-GWVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVS 267 (471)
T ss_pred cccCCccCCeeEECCccC-------------CeEEecC-CEEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcE
Confidence 111234678999999998 8999987 58999999999999999999 899999999997775 7999
Q ss_pred eeeEEEcccceEEEEEEeCCCCCceEEEEEeeccCC-cc----------eeEEEEEecCCCCCCCCCCCCCCCCcccccc
Q 046746 262 YESLDVHVGQCFTVLVTANQDPKDYYLIASTRFTRT-VI----------TTTAIVRYSDSKGLASPDLPKAPVGWDWSLN 330 (561)
Q Consensus 262 ~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~-~~----------~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~ 330 (561)
++++.|+|||||||+|+++ ..+.+.+++....... .. ....+++........ ..+
T Consensus 268 ~~~l~l~pGeR~dvlVd~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----------- 333 (471)
T PRK10883 268 VKQLSLAPGERREILVDMS-NGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP--LVT----------- 333 (471)
T ss_pred eCeEEECCCCeEEEEEECC-CCceEEEECCCccccccccccccCCccccccceeEEEEcccccc--CCC-----------
Confidence 9999999999999999997 4456666552110000 00 001112211110000 000
Q ss_pred ccccccccccccCCCCCCCCCCCcCCcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchhhhhhcCCCCcccccCCC
Q 046746 331 QFRSFRWNLTASAARPNPQGSFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEYYGIPEEVFKYNVI 410 (561)
Q Consensus 331 ~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~ 410 (561)
..++..+.+.. +.+ ......+++.+.. . .|.|||++|.+...
T Consensus 334 --~~~p~~l~~~~--~~~------~~~~~~~~~~l~~-------~-~~~INg~~~~~~~~-------------------- 375 (471)
T PRK10883 334 --DNLPMRLLPDE--IME------GSPIRSREISLGD-------D-LPGINGALWDMNRI-------------------- 375 (471)
T ss_pred --CcCChhhcCCC--CCC------CCCcceEEEEecC-------C-cCccCCcccCCCcc--------------------
Confidence 00000110000 000 0111234444432 1 36899998853211
Q ss_pred CCCCCcccccccccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCC
Q 046746 411 SDKPADEIENVTLQPNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFP 490 (561)
Q Consensus 411 ~~~p~~~~~~~~~~~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~ 490 (561)
.+.++.|++++|.|.|. +.|||||||+.|||++++..... ..+..|||||.|+
T Consensus 376 ----------------~~~~~~g~~e~W~~~n~--~~HP~HlHg~~FqVl~~~G~~~~--------~~~~gwkDTV~v~- 428 (471)
T PRK10883 376 ----------------DVTAQQGTWERWTVRAD--MPQAFHIEGVMFLIRNVNGAMPF--------PEDRGWKDTVWVD- 428 (471)
T ss_pred ----------------eeecCCCCEEEEEEECC--CCcCEeECCccEEEEEecCCCCC--------ccccCcCcEEEcC-
Confidence 13468899999999886 58999999999999999643111 1223699999996
Q ss_pred CcEEEEEEEeCCcc----eeeeecccchhhhccceEEEEEec
Q 046746 491 NCWAAILVSMDNAG----MWNLRSNIWERNYLGQQLYLSVRL 528 (561)
Q Consensus 491 ~g~~~irf~adnpG----~w~~HCHil~H~d~GMm~~~~V~~ 528 (561)
+.+.|+++++++| .||||||||+|||.|||..|+|.+
T Consensus 429 -~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 429 -GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred -CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 4699999999887 899999999999999999999965
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9.5e-60 Score=501.87 Aligned_cols=402 Identities=21% Similarity=0.235 Sum_probs=289.2
Q ss_pred ecCCCeeeeEEEECCcCCCCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCcc-CCccCCCCeEEEEEEe
Q 046746 40 ISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGT-NCPIPPGKNYTYYLQV 118 (561)
Q Consensus 40 ~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~-q~~i~PG~~~~Y~f~~ 118 (561)
...++.....|.|||++|||+|++++||+|+|+++|.|.+++++||||+..+ +.+||++.. |+++.||++++|.|+.
T Consensus 45 ~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p--~~~dG~~~~~~~~~~~~~~~~y~f~~ 122 (451)
T COG2132 45 AFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVP--GEMDGVPPLTQIPPGPGETPTYTFTQ 122 (451)
T ss_pred eeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccC--ccccCCCcccccCCCCCCcEEEeecC
Confidence 3455778899999999999999999999999999999988899999998665 789998765 9999999999999996
Q ss_pred cCceeeeeEecCchhhhccCceeEEEEecCCCCCCCCCCCCCCceEEEecceeecchHHhhhhhcCCCCCCCCCeEEEcC
Q 046746 119 KDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPVPYNRFVEDDFTLLIGDWYTRSHVELGKQLDSGKLLGKPDGVLING 198 (561)
Q Consensus 119 ~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~liNG 198 (561)
+++||||||+|.+.|+.+||+|++||++....+..+ |++..++..+|+.......... .........+..+|||
T Consensus 123 -~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~~~----d~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~vnG 196 (451)
T COG2132 123 -DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPLGV----DDEPVILQDDWLDEDGTDLYQE-GPAMGGFPGDTLLVNG 196 (451)
T ss_pred -CCCcceEeccCCCchhhcccceeEEEeCCCCCCCCC----CceEEEEEeeeecCCCCccccC-CccccCCCCCeEEECC
Confidence 557799999999999999999999999976544433 7777777888876544333221 0111234568999999
Q ss_pred ccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEeecCcccceeeeeeEEEcccceEEEEEE
Q 046746 199 KSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVLVT 278 (561)
Q Consensus 199 ~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~ 278 (561)
+.. |.+.++. .+|||||+|+++.+.+.+++.+++|+||+.||.++++..++.+.|.|||||||+++
T Consensus 197 ~~~-------------p~~~~~~-g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 197 AIL-------------PFKAVPG-GVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred Ccc-------------ceeecCC-CeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEE
Confidence 776 6666665 56999999999889889999999999999999999998999999999999999999
Q ss_pred eCCCCCceEEEEEeeccCCcceeEEEEEecCCCCC---CCCCCCCCCCCccccccccccccccccccCCCCCCCCCCCcC
Q 046746 279 ANQDPKDYYLIASTRFTRTVITTTAIVRYSDSKGL---ASPDLPKAPVGWDWSLNQFRSFRWNLTASAARPNPQGSFHYG 355 (561)
Q Consensus 279 ~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~---~~~~~p~~p~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~ 355 (561)
+. ..+.+.+.+...... ....+.......... ........+..... ... ....+......+.
T Consensus 263 ~~-~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~--~~~~~~~~~~~~~-------- 327 (451)
T COG2132 263 MN-DGGAVTLTALGEDMP--DTLKGFRAPNPILTPSYPVLNGRVGAPTGDMA--DHA--PVGLLVTILVEPG-------- 327 (451)
T ss_pred cC-CCCeEEEEeccccCC--ceeeeeeccccccccccccccccccCCCcchh--hcc--ccccchhhcCCCc--------
Confidence 98 467777777641111 111111111110000 00000000000000 000 0000000000000
Q ss_pred CcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchhhhhhcCCCCcccccCCCCCCCCcccccccccceEEecCCCcE
Q 046746 356 GIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEYYGIPEEVFKYNVISDKPADEIENVTLQPNVMDATYKAF 435 (561)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~ 435 (561)
...+..+.+.. ..+...|.+|+..|.+. ...+.++.|++
T Consensus 328 -~~~~~~~~l~~----~~~~~~~~~n~~~~~~~------------------------------------~~~~~~~~G~~ 366 (451)
T COG2132 328 -PNRDTDFHLIG----GIGGYVWAINGKAFDDN------------------------------------RVTLIAKAGTR 366 (451)
T ss_pred -ccccccchhhc----ccccccccccCccCCCC------------------------------------cCceeecCCCE
Confidence 00111111111 01223477777665431 12345789999
Q ss_pred EEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCcceeeeecccchh
Q 046746 436 MEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAGMWNLRSNIWER 515 (561)
Q Consensus 436 ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H 515 (561)
++|+|.|.+.+.|||||||+.|+|++.+. ......+.||||+.+.+++.++|+|.+|+||.|+||||+++|
T Consensus 367 ~~~~i~n~~~~~HP~HlHg~~F~v~~~~~---------~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H 437 (451)
T COG2132 367 ERWVLTNDTPMPHPFHLHGHFFQVLSGDA---------PAPGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEH 437 (451)
T ss_pred EEEEEECCCCCccCeEEcCceEEEEecCC---------CcccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhH
Confidence 99999999999999999999999999971 122345689999999999999999999999999999999999
Q ss_pred hhccceEEEEEec
Q 046746 516 NYLGQQLYLSVRL 528 (561)
Q Consensus 516 ~d~GMm~~~~V~~ 528 (561)
++.|||..+.|..
T Consensus 438 ~~~Gm~~~~~v~~ 450 (451)
T COG2132 438 EDNGMMGQFGVVP 450 (451)
T ss_pred hhcCCeeEEEecC
Confidence 9999999998853
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=6.3e-48 Score=388.27 Aligned_cols=264 Identities=18% Similarity=0.243 Sum_probs=217.8
Q ss_pred cCCCeEEEEEEEEEEEec-CCCeeeeEEEECCcCCCCeEEecCCCEEEEEEEeCCC--CCeeeeeCCccCCCCCCCCCCC
Q 046746 24 AGSPTFFFTWNVTYGTIS-PLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLD--EPFLLTWPGIQHKKNSWQDGVL 100 (561)
Q Consensus 24 a~~~~~~~~l~~~~~~~~-~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~--~~~~iH~HG~~~~~~~~~DGv~ 100 (561)
+..++++|+|++++...+ .+|..+.+|+|||++|||+|++++||+|+|+|+|+++ ..+++||||. ..+||++
T Consensus 23 ~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~-----~~~dg~~ 97 (311)
T TIGR02376 23 SGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAA-----TGALGGA 97 (311)
T ss_pred CCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCC-----CccCCCC
Confidence 455889999999999988 4699999999999999999999999999999999985 5789999996 2478877
Q ss_pred cc-CCccCCCCeEEEEEEecCceeeeeEecCc----hhhhccCceeEEEEecCCCCCCCCCCCCCCceEEEecceeecch
Q 046746 101 GT-NCPIPPGKNYTYYLQVKDQIGSYIYHPST----GFHRAAGGFGGLCIHSRSVVPVPYNRFVEDDFTLLIGDWYTRSH 175 (561)
Q Consensus 101 ~~-q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~~~~~~e~~l~~~d~~~~~~ 175 (561)
.+ | |.||++++|+|++ +++||||||||. ..|+.+||+|+|||++++..+ . .|+|++|+++||+++.+
T Consensus 98 ~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~-~----~d~e~~l~l~d~~~~~~ 169 (311)
T TIGR02376 98 ALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP-E----YDKEYYIGESDLYTPKD 169 (311)
T ss_pred ccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc-C----cceeEEEeeeeEecccc
Confidence 65 4 9999999999996 679999999995 479999999999999864322 2 38899999999999754
Q ss_pred HHhhhhhc-C-C-CCCCCCCeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEee
Q 046746 176 VELGKQLD-S-G-KLLGKPDGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEM 252 (561)
Q Consensus 176 ~~~~~~~~-~-~-~~~~~~~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~ 252 (561)
........ . + .....++.++|||+..++ .+.+++++|+++||||+|+++.+.+.|+++|+.+++|+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~----------~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~ 239 (311)
T TIGR02376 170 EGEGGAYEDDVAAMRTLTPTHVVFNGAVGAL----------TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWV 239 (311)
T ss_pred ccccccccchHHHHhcCCCCEEEECCccCCC----------CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEE
Confidence 32111000 0 0 112456899999996411 156799999999999999999999999999999999999
Q ss_pred cCcccceee--eeeEEEcccceEEEEEEeCCCCCceEEEEEeeccCCcceeEEEEEecCCC
Q 046746 253 EGSHVVQNE--YESLDVHVGQCFTVLVTANQDPKDYYLIASTRFTRTVITTTAIVRYSDSK 311 (561)
Q Consensus 253 DG~~~~p~~--~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~ 311 (561)
||.++.+.. ++++.|+||||+||+|+++ ++|.|++++............++|+|++..
T Consensus 240 DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~-~pG~y~~~~~~~~~~~~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 240 TGKFANPPNRDVETWFIPGGSAAAALYTFE-QPGVYAYVDHNLIEAFEKGAAAQVKVEGAW 299 (311)
T ss_pred CCcccCCCCCCcceEEECCCceEEEEEEeC-CCeEEEEECcHHHHHHhCCCEEEEEECCCC
Confidence 999998644 8999999999999999999 589999999765433234578999998765
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=4.8e-36 Score=258.09 Aligned_cols=115 Identities=38% Similarity=0.734 Sum_probs=107.7
Q ss_pred EEEEEEecCCCeeeeEEEECCcCCCCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCcc-CCccCCCCeE
Q 046746 34 NVTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGT-NCPIPPGKNY 112 (561)
Q Consensus 34 ~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~-q~~i~PG~~~ 112 (561)
+|++.++.++|..+.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||+++...+++||+++. ||+|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 478899999988899999999999999999999999999999999999999999999988899999986 9999999999
Q ss_pred EEEEEecCceeeeeEecCchhhhccCceeEEEEecC
Q 046746 113 TYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSR 148 (561)
Q Consensus 113 ~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 148 (561)
+|+|++++++||||||||.+.|..+||+|+|||+++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 999998666999999999998878999999999985
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=3.2e-30 Score=230.99 Aligned_cols=108 Identities=30% Similarity=0.449 Sum_probs=98.5
Q ss_pred ccccceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEe
Q 046746 421 VTLQPNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSM 500 (561)
Q Consensus 421 ~~~~~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~a 500 (561)
.+.+..++.++.|++|||+|+|.+...|||||||++|+|++++.+.++......+++.+|.||||+.|+++++++|||++
T Consensus 29 ~~~~~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~ 108 (138)
T PF07731_consen 29 FFGNTPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA 108 (138)
T ss_dssp SSSTTSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE
T ss_pred cCCCcceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEe
Confidence 45678889999999999999999999999999999999999988766555555688999999999999999999999999
Q ss_pred CCcceeeeecccchhhhccceEEEEEec
Q 046746 501 DNAGMWNLRSNIWERNYLGQQLYLSVRL 528 (561)
Q Consensus 501 dnpG~w~~HCHil~H~d~GMm~~~~V~~ 528 (561)
||||.|+|||||++|++.|||+.+.|.+
T Consensus 109 ~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 109 DNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp TSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred ecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999965
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.95 E-value=5.9e-27 Score=214.46 Aligned_cols=147 Identities=33% Similarity=0.619 Sum_probs=119.5
Q ss_pred CceEEEecceeecchHHhhh-hhcCC----CCCCCCCeEEEcCccCCCCCCCC---CCCCCCceEEEEcCCEEEEEEEEc
Q 046746 161 DDFTLLIGDWYTRSHVELGK-QLDSG----KLLGKPDGVLINGKSGRLDYDSD---GKGDNEPLFTMKAGKVYKYRICNV 232 (561)
Q Consensus 161 ~e~~l~~~d~~~~~~~~~~~-~~~~~----~~~~~~~~~liNG~~~~~~~~~~---~~~~~~p~~~v~~G~~~rlRliN~ 232 (561)
.|++|+++||+++....+.. .+..+ ...+++++++|||++. ++|. ...+..+.+++++|++|||||||+
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~---~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa 77 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGR---FDCSSADYTGGEPPVIKVKPGERYRLRLINA 77 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTC---BTTCTTGSTTSTSGEEEEETTTEEEEEEEEE
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccc---cccccccccccccceEEEcCCcEEEEEEEec
Confidence 47899999999987655543 32222 1256899999999987 4442 233567999999999999999999
Q ss_pred CCCceEEEEEeCcccEEEeecCcccceeeeeeEEEcccceEEEEEEeCCCCCceEEEEEee----ccCCcceeEEEEEec
Q 046746 233 GVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTANQDPKDYYLIASTR----FTRTVITTTAIVRYS 308 (561)
Q Consensus 233 ~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~----~~~~~~~~~ail~y~ 308 (561)
|+...+.|+|+||+|+|||+||.+++|..++++.|+|||||||+|++++++|+|||++... .......++|+|+|.
T Consensus 78 ~~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 78 GASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp SSS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred cCCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 9999999999999999999999999999999999999999999999997799999999622 122356789999998
Q ss_pred CC
Q 046746 309 DS 310 (561)
Q Consensus 309 ~~ 310 (561)
++
T Consensus 158 ~~ 159 (159)
T PF00394_consen 158 GA 159 (159)
T ss_dssp TS
T ss_pred CC
Confidence 63
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.76 E-value=3.5e-18 Score=152.67 Aligned_cols=102 Identities=17% Similarity=0.169 Sum_probs=80.4
Q ss_pred CCeeeeEEEECCcCCCCeEEecCCCEEEEEEEeCC---CCCeeeeeCCccCCCCCCCCCCCcc-CCccCCC---C-e--E
Q 046746 43 LGIPQQGILINGQFPGPNINSTTNDNLVINVFNKL---DEPFLLTWPGIQHKKNSWQDGVLGT-NCPIPPG---K-N--Y 112 (561)
Q Consensus 43 dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l---~~~~~iH~HG~~~~~~~~~DGv~~~-q~~i~PG---~-~--~ 112 (561)
.+....-+.++| .++|+|++++||+|+|+|+|.+ ...+.||+||......+.+||++.. ||+|.|+ + . .
T Consensus 37 ~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~ 115 (148)
T TIGR03095 37 PGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYT 115 (148)
T ss_pred CCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCcccee
Confidence 355566677788 5699999999999999999995 4457777777765555569999876 8988884 1 1 2
Q ss_pred EEEEEecCceeeeeEecCchhhhccCceeEEEEe
Q 046746 113 TYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIH 146 (561)
Q Consensus 113 ~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 146 (561)
+++|+. .++||||||||...|+.+||+|.|||+
T Consensus 116 ~~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 445553 379999999999999999999999995
No 22
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.66 E-value=1.7e-14 Score=145.83 Aligned_cols=243 Identities=13% Similarity=0.052 Sum_probs=154.9
Q ss_pred CCeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCC-ceEEEEEeCcccEEEeecCcccceeeeeeEEEcc
Q 046746 191 PDGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVK-TSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHV 269 (561)
Q Consensus 191 ~~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~-~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~p 269 (561)
.+.+++||+.. .|.|++++|+++++++.|.... ..+.++++++. +.||... ...|.|
T Consensus 47 ~~~~~~nG~~p------------GP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~P 104 (311)
T TIGR02376 47 YQAMTFDGSVP------------GPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNP 104 (311)
T ss_pred EEEEEECCccc------------CceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECC
Confidence 35799999964 3999999999999999998642 46788998874 4577531 123899
Q ss_pred cceEEEEEEeCCCCCceEEEEEeec--cCC-cceeEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccccCCCC
Q 046746 270 GQCFTVLVTANQDPKDYYLIASTRF--TRT-VITTTAIVRYSDSKGLASPDLPKAPVGWDWSLNQFRSFRWNLTASAARP 346 (561)
Q Consensus 270 geR~dv~v~~~~~~g~y~i~~~~~~--~~~-~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~~~~~~p 346 (561)
|+++.+.+.++ .+|.||.+++... ..+ .....+.|.+.... +.|. .+....+. ..+ |.+......
T Consensus 105 G~t~ty~F~~~-~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~-----~~~~--~d~e~~l~-l~d--~~~~~~~~~- 172 (311)
T TIGR02376 105 GETATLRFKAT-RPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPRE-----GLPE--YDKEYYIG-ESD--LYTPKDEGE- 172 (311)
T ss_pred CCeEEEEEEcC-CCEEEEEEcCCCCchhHHhhcCcceEEEeeccC-----CCcC--cceeEEEe-eee--Eeccccccc-
Confidence 99999999987 7999999998431 111 12233444444321 1111 01000000 000 000000000
Q ss_pred CCCCCCCcCCcCcceEEEEccc-eeccCCeEEEEEcCeeccCCCCchhhhhhcCCCCcccccCCCCCCCCcccccccccc
Q 046746 347 NPQGSFHYGGIPINRTIRLANT-AHLVNGKVRFAVNGVSYVNSETPLKFAEYYGIPEEVFKYNVISDKPADEIENVTLQP 425 (561)
Q Consensus 347 ~p~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 425 (561)
. ..+..... +....+ ..+.|||+.+... |
T Consensus 173 --~-----------~~~~~~~~~~~~~~~-~~~~iNG~~~~~~--~---------------------------------- 202 (311)
T TIGR02376 173 --G-----------GAYEDDVAAMRTLTP-THVVFNGAVGALT--G---------------------------------- 202 (311)
T ss_pred --c-----------ccccchHHHHhcCCC-CEEEECCccCCCC--C----------------------------------
Confidence 0 00000000 000011 2367888753110 0
Q ss_pred eEEecCCCcEEEEEEEcCCC-CCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCC-ceeEEEeCCCcEEEEEEEeCCc
Q 046746 426 NVMDATYKAFMEIVLENRQN-TMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAV-SRYTIQVFPNCWAAILVSMDNA 503 (561)
Q Consensus 426 ~~~~~~~g~~ve~vl~N~~~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~-~rDTv~vp~~g~~~irf~adnp 503 (561)
.+.++.|++++|.|.|.+. ..+.||++|++|+++..++....+ |. ..||+.|.||+.+.|.++++.|
T Consensus 203 -~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~----------~~~~~~~~~i~PG~R~dv~v~~~~p 271 (311)
T TIGR02376 203 -DNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANP----------PNRDVETWFIPGGSAAAALYTFEQP 271 (311)
T ss_pred -CcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCC----------CCCCcceEEECCCceEEEEEEeCCC
Confidence 1246789999999999874 679999999999999995432221 22 2699999999999999999999
Q ss_pred ceeeeecccchhh-hccceEEEEEec
Q 046746 504 GMWNLRSNIWERN-YLGQQLYLSVRL 528 (561)
Q Consensus 504 G~w~~HCHil~H~-d~GMm~~~~V~~ 528 (561)
|.|++|||...|. ..||++.++|..
T Consensus 272 G~y~~~~~~~~~~~~~g~~~~i~~~g 297 (311)
T TIGR02376 272 GVYAYVDHNLIEAFEKGAAAQVKVEG 297 (311)
T ss_pred eEEEEECcHHHHHHhCCCEEEEEECC
Confidence 9999999999887 679999998853
No 23
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.64 E-value=7.9e-16 Score=166.81 Aligned_cols=112 Identities=17% Similarity=0.275 Sum_probs=91.5
Q ss_pred CeEEEEEEEEEEEecCCCeeeeEEEECCcCCCC--eEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCcc--
Q 046746 27 PTFFFTWNVTYGTISPLGIPQQGILINGQFPGP--NINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGT-- 102 (561)
Q Consensus 27 ~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP--~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~-- 102 (561)
+.|++++.++. +..+.+|+|||+.+++ .|++++||+|+|+|.|.+...+.|||||+..... ..||....
T Consensus 471 p~r~~~~~L~g------~m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~-~~~G~~~~~~ 543 (587)
T TIGR01480 471 PGREIELHLTG------NMERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELE-DGQGEFQVRK 543 (587)
T ss_pred CCceEEEEEcC------CCceeEEEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeeee-cCCCcccccC
Confidence 45555555532 2357789999998874 7999999999999999999999999999976432 33664322
Q ss_pred -CCccCCCCeEEEEEEecCceeeeeEecCchhhhccCceeEEEEe
Q 046746 103 -NCPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIH 146 (561)
Q Consensus 103 -q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 146 (561)
...|.||++++|+|.+ +++|+||||||...|...||++.+.|.
T Consensus 544 dTv~V~Pg~t~~~~f~a-d~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 544 HTVDVPPGGKRSFRVTA-DALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CceeeCCCCEEEEEEEC-CCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 5789999999999995 789999999999999999999999874
No 24
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.47 E-value=5.4e-13 Score=115.03 Aligned_cols=98 Identities=19% Similarity=0.140 Sum_probs=79.1
Q ss_pred ccccCCCeEEEEEEEE--EEEe---cCCCeeeeEE-EECCcCCCCeEEecCCCEEEEEEEeCCCC--CeeeeeCCccCCC
Q 046746 21 LVEAGSPTFFFTWNVT--YGTI---SPLGIPQQGI-LINGQFPGPNINSTTNDNLVINVFNKLDE--PFLLTWPGIQHKK 92 (561)
Q Consensus 21 ~~~a~~~~~~~~l~~~--~~~~---~~dG~~~~~~-~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~--~~~iH~HG~~~~~ 92 (561)
++.|.+..|+|+++|. +..+ ...|++...+ ++|+++..+.|+|++||+|++++.|..+. ...+++||+
T Consensus 17 ~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi---- 92 (135)
T TIGR03096 17 MGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDAYGI---- 92 (135)
T ss_pred ccchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEECCCCc----
Confidence 3456667799999999 6655 3568887666 99999999999999999999999998753 345555543
Q ss_pred CCCCCCCCccCCccCCCCeEEEEEEecCceeeeeEecCchh
Q 046746 93 NSWQDGVLGTNCPIPPGKNYTYYLQVKDQIGSYIYHPSTGF 133 (561)
Q Consensus 93 ~~~~DGv~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~ 133 (561)
+..|.||++.+|+|+ ++++|+|||||-.|.
T Consensus 93 ----------s~~I~pGet~TitF~-adKpG~Y~y~C~~HP 122 (135)
T TIGR03096 93 ----------SEVIKAGETKTISFK-ADKAGAFTIWCQLHP 122 (135)
T ss_pred ----------ceEECCCCeEEEEEE-CCCCEEEEEeCCCCC
Confidence 246899999999999 589999999998763
No 25
>PRK10965 multicopper oxidase; Provisional
Probab=99.23 E-value=7.2e-10 Score=119.65 Aligned_cols=233 Identities=17% Similarity=0.186 Sum_probs=140.6
Q ss_pred eeEEEECCcCCCCeEEecCCCEEEEEEEeCCC-CCeeeee-CCccCCCCCCCCCCCcc------CCccCCCCeEEEEEEe
Q 046746 47 QQGILINGQFPGPNINSTTNDNLVINVFNKLD-EPFLLTW-PGIQHKKNSWQDGVLGT------NCPIPPGKNYTYYLQV 118 (561)
Q Consensus 47 ~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~~iH~-HG~~~~~~~~~DGv~~~------q~~i~PG~~~~Y~f~~ 118 (561)
...+++||+. .|.+.+. |.++++|+.|... ....+.+ .|.... -...||.+.. ...|.|||+++..++.
T Consensus 212 gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~-vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~ 288 (523)
T PRK10965 212 GDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLY-VIASDGGLLAEPVKVSELPILMGERFEVLVDT 288 (523)
T ss_pred CCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEE-EEEeCCCcccCccEeCeEEECccceEEEEEEc
Confidence 3578999995 7899885 6699999999974 5556766 443222 2468986432 4569999999999986
Q ss_pred cCceeeeeEecCchhhhccC------ceeEEEEecCC---CCCCC-----CCCCCC------CceEEEecceee------
Q 046746 119 KDQIGSYIYHPSTGFHRAAG------GFGGLCIHSRS---VVPVP-----YNRFVE------DDFTLLIGDWYT------ 172 (561)
Q Consensus 119 ~~~~Gt~wYH~H~~~q~~~G------l~G~liV~~~~---~~~~~-----~~~~~~------~e~~l~~~d~~~------ 172 (561)
. +.|.++...-...+...+ -.-.+.|.... ....| .+.... +.+.+.+..+.-
T Consensus 289 ~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~ 367 (523)
T PRK10965 289 S-DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMMGMQM 367 (523)
T ss_pred C-CCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchhhhhh
Confidence 4 467776654321111100 01122333111 00110 000000 122222211100
Q ss_pred ---cch-HHhhh--------h--------hcCCC--CCCCC---CeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEE
Q 046746 173 ---RSH-VELGK--------Q--------LDSGK--LLGKP---DGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKY 227 (561)
Q Consensus 173 ---~~~-~~~~~--------~--------~~~~~--~~~~~---~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rl 227 (561)
... ..... . ++.+. ..... ..++|||+.+. .+.+.++++.|++.+|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~---------~~~~~~~~~~G~~e~w 438 (523)
T PRK10965 368 LMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFD---------MNKPMFAAKKGQYERW 438 (523)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccCCCeECC---------CCCcceecCCCCEEEE
Confidence 000 00000 0 00000 00001 12489999861 1347789999999999
Q ss_pred EEEEcCCCceEEEEEeCcccEEEeecCcccce---eeeeeEEEcccceEEEEEEeCC---CCCceEEEEEee
Q 046746 228 RICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQ---NEYESLDVHVGQCFTVLVTANQ---DPKDYYLIASTR 293 (561)
Q Consensus 228 RliN~~~~~~~~~~i~gh~~~via~DG~~~~p---~~~~~v~l~pgeR~dv~v~~~~---~~g~y~i~~~~~ 293 (561)
+|+|.+....|.|||||+.|+|++.||.+..+ ...|+|.+.+ ++++++++++. .+|.|.++++..
T Consensus 439 ~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL 509 (523)
T PRK10965 439 VISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLL 509 (523)
T ss_pred EEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCch
Confidence 99999976678999999999999999998653 4689999976 88999999983 457999999854
No 26
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.13 E-value=4.3e-09 Score=114.84 Aligned_cols=239 Identities=13% Similarity=0.089 Sum_probs=144.0
Q ss_pred CeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEE-eecCcccceeeeeeEEEccc
Q 046746 192 DGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLV-EMEGSHVVQNEYESLDVHVG 270 (561)
Q Consensus 192 ~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~~~v~l~pg 270 (561)
..+++||+.. .|.|+++.|+++++++.|--... ..+|.||....-- ..||.+ .+..-.|.||
T Consensus 23 ~~~~~NG~~P------------GP~i~~~~GD~v~v~v~N~l~~~-tsiHwHGl~q~~~~~~DGv~----~vTq~pI~PG 85 (539)
T TIGR03389 23 SILTVNGKFP------------GPTLYAREGDTVIVNVTNNVQYN-VTIHWHGVRQLRNGWADGPA----YITQCPIQPG 85 (539)
T ss_pred EEEEECCccc------------CCEEEEEcCCEEEEEEEeCCCCC-eeEecCCCCCCCCCCCCCCc----ccccCCcCCC
Confidence 4799999974 49999999999999999998754 4667766543221 258864 2333468999
Q ss_pred ceEEEEEEeCCCCCceEEEEEeeccCCcceeEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccccCCCCCCCC
Q 046746 271 QCFTVLVTANQDPKDYYLIASTRFTRTVITTTAIVRYSDSKGLASPDLPKAPVGWDWSLNQFRSFRWNLTASAARPNPQG 350 (561)
Q Consensus 271 eR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~~~~~~p~p~~ 350 (561)
+.+...+++.+.+|+||.+++..... ....+-|.+.+... .+.|....+. +....+..-.... ...
T Consensus 86 ~s~~Y~f~~~~~~GT~WYHsH~~~~~--~Gl~G~lIV~~~~~---~~~~~~~~d~--------e~~l~l~Dw~~~~-~~~ 151 (539)
T TIGR03389 86 QSYVYNFTITGQRGTLWWHAHISWLR--ATVYGAIVILPKPG---VPYPFPKPDR--------EVPIILGEWWNAD-VEA 151 (539)
T ss_pred CeEEEEEEecCCCeeEEEecCchhhh--ccceEEEEEcCCCC---CCCCCCCCCc--------eEEEEecccccCC-HHH
Confidence 99999999865799999999854221 22334333333221 0111100000 0000000000000 000
Q ss_pred CCCcCCcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchhhhhhcCCCCcccccCCCCCCCCcccccccccceEEec
Q 046746 351 SFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEYYGIPEEVFKYNVISDKPADEIENVTLQPNVMDA 430 (561)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 430 (561)
. ... . ..... ...-.-.+.|||+..... . | ......++.+
T Consensus 152 -~------~~~-~-~~~~~-~~~~~d~~liNG~~~~~~-----------------~----------~---~~~~~~~i~v 191 (539)
T TIGR03389 152 -V------INQ-A-NQTGG-APNVSDAYTINGHPGPLY-----------------N----------C---SSKDTFKLTV 191 (539)
T ss_pred -H------HHH-H-HhcCC-CCCccceEEECCCcCCCC-----------------C----------C---CCCCceEEEE
Confidence 0 000 0 00000 000012367888642100 0 0 0012346788
Q ss_pred CCCcEEEEEEEcCC-CCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCC-cceeee
Q 046746 431 TYKAFMEIVLENRQ-NTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDN-AGMWNL 508 (561)
Q Consensus 431 ~~g~~ve~vl~N~~-~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adn-pG~w~~ 508 (561)
+.|++++|+|+|.+ ...+-|||+||.|+|++.++. + ..|...|++.|.+|+.+.|.+.++. +|.|.+
T Consensus 192 ~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~-~----------~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i 260 (539)
T TIGR03389 192 EPGKTYLLRIINAALNDELFFAIANHTLTVVEVDAT-Y----------TKPFKTKTIVIGPGQTTNVLLTADQSPGRYFM 260 (539)
T ss_pred CCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCc-c----------cCceEeCeEEecCCCEEEEEEECCCCCceEEE
Confidence 99999999999987 456899999999999999642 2 2467789999999999999999976 799887
Q ss_pred eccc
Q 046746 509 RSNI 512 (561)
Q Consensus 509 HCHi 512 (561)
+-+.
T Consensus 261 ~~~~ 264 (539)
T TIGR03389 261 AARP 264 (539)
T ss_pred EEec
Confidence 7553
No 27
>PLN02835 oxidoreductase
Probab=99.10 E-value=5.8e-09 Score=113.10 Aligned_cols=225 Identities=12% Similarity=0.094 Sum_probs=134.2
Q ss_pred CeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEE-EeecCcccceeeeeeEEEccc
Q 046746 192 DGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKL-VEMEGSHVVQNEYESLDVHVG 270 (561)
Q Consensus 192 ~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~~~v~l~pg 270 (561)
..++|||+.. .|.|+++.|+++++++.|.-.. ...+|.||..+.- -..||.+. ..-.|.||
T Consensus 49 ~~~~~NG~~P------------GP~I~~~~GD~v~v~v~N~L~~-~ttiHWHGl~~~~~~~~DGv~~-----tQ~pI~PG 110 (539)
T PLN02835 49 QVILINGQFP------------GPRLDVVTNDNIILNLINKLDQ-PFLLTWNGIKQRKNSWQDGVLG-----TNCPIPPN 110 (539)
T ss_pred EEEEECCcCC------------CCCEEEECCCEEEEEEEeCCCC-CCcEEeCCcccCCCCCCCCCcc-----CcCCCCCC
Confidence 4799999974 3999999999999999999874 3467777765432 24699643 13479999
Q ss_pred ceEEEEEEeCCCCCceEEEEEeeccCCcceeEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccccCCCCCCCC
Q 046746 271 QCFTVLVTANQDPKDYYLIASTRFTRTVITTTAIVRYSDSKGLASPDLPKAPVGWDWSLNQFRSFRWNLTASAARPNPQG 350 (561)
Q Consensus 271 eR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~~~~~~p~p~~ 350 (561)
+.+...+++.+.+|+||.+++..... .....+-|.+..... .+.|....+.+ +...+..-.... ..
T Consensus 111 ~sf~Y~F~~~~q~GT~WYHsH~~~q~-~~Gl~G~lIV~~~~~---~~~p~~~~d~e--------~~l~l~Dw~~~~--~~ 176 (539)
T PLN02835 111 SNYTYKFQTKDQIGTFTYFPSTLFHK-AAGGFGAINVYERPR---IPIPFPLPDGD--------FTLLVGDWYKTS--HK 176 (539)
T ss_pred CcEEEEEEECCCCEeEEEEeCccchh-cCcccceeEEeCCCC---CCcCCCCCCce--------EEEEeeccccCC--HH
Confidence 99999998754699999999743211 111222222222110 01110000000 000000000000 00
Q ss_pred CCCcCCcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchhhhhhcCCCCcccccCCCCCCCCcccccccccceEEec
Q 046746 351 SFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEYYGIPEEVFKYNVISDKPADEIENVTLQPNVMDA 430 (561)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 430 (561)
. .... +.... ...-.....|||+.. ..+.+
T Consensus 177 ~-------~~~~--~~~g~-~~~~~d~~liNG~~~----------------------------------------~~~~v 206 (539)
T PLN02835 177 T-------LQQR--LDSGK-VLPFPDGVLINGQTQ----------------------------------------STFSG 206 (539)
T ss_pred H-------HHHH--hhcCC-CCCCCceEEEccccC----------------------------------------ceEEE
Confidence 0 0000 00000 000001134555421 13567
Q ss_pred CCCcEEEEEEEcCCC-CCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCC-cceeee
Q 046746 431 TYKAFMEIVLENRQN-TMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDN-AGMWNL 508 (561)
Q Consensus 431 ~~g~~ve~vl~N~~~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adn-pG~w~~ 508 (561)
+.|+++.|+|+|.+. ...-|||.||+|.|++.++.. ..|...|++.|.+|+.+.+.++++. +|.|-+
T Consensus 207 ~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~-----------v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i 275 (539)
T PLN02835 207 DQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSH-----------TIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYI 275 (539)
T ss_pred CCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCcc-----------CCCceeeEEEECcCceEEEEEEcCCCCCcEEE
Confidence 889999999999884 579999999999999996432 2245679999999999999999864 687766
Q ss_pred e
Q 046746 509 R 509 (561)
Q Consensus 509 H 509 (561)
+
T Consensus 276 ~ 276 (539)
T PLN02835 276 V 276 (539)
T ss_pred E
Confidence 5
No 28
>PRK10883 FtsI repressor; Provisional
Probab=99.09 E-value=4.3e-09 Score=112.62 Aligned_cols=220 Identities=14% Similarity=0.129 Sum_probs=132.4
Q ss_pred eeeEEEECCcCCCCeEEecCCCEEEEEEEeCCC-CCeeeee-CCccCCCCCCCCCCCcc------CCccCCCCeEEEEEE
Q 046746 46 PQQGILINGQFPGPNINSTTNDNLVINVFNKLD-EPFLLTW-PGIQHKKNSWQDGVLGT------NCPIPPGKNYTYYLQ 117 (561)
Q Consensus 46 ~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~~iH~-HG~~~~~~~~~DGv~~~------q~~i~PG~~~~Y~f~ 117 (561)
....+++||+. .|.|.|+.| ++++|+.|... ....+++ .|.... -...||-+.. +..|.|||+++.-++
T Consensus 208 ~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~-vIa~DGg~~~~P~~~~~l~l~pGeR~dvlVd 284 (471)
T PRK10883 208 VGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLH-VIAGDQGFLPAPVSVKQLSLAPGERREILVD 284 (471)
T ss_pred cCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEE-EEEeCCCcccCCcEeCeEEECCCCeEEEEEE
Confidence 35678999996 799999875 89999999985 5678887 554322 2457864321 456999999999999
Q ss_pred ecCceeeeeEecCchhhhccCcee------------EEEEecCCCCCCCCCCCCCCceEEEecceeecchHHhhh-hhcC
Q 046746 118 VKDQIGSYIYHPSTGFHRAAGGFG------------GLCIHSRSVVPVPYNRFVEDDFTLLIGDWYTRSHVELGK-QLDS 184 (561)
Q Consensus 118 ~~~~~Gt~wYH~H~~~q~~~Gl~G------------~liV~~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~-~~~~ 184 (561)
. .+.+.+.+++-.......++.+ .+-++.....+ .. ....+..+............. .+..
T Consensus 285 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~p~~l~~~~~~~~~~~~~~~~~l 358 (471)
T PRK10883 285 M-SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-LV----TDNLPMRLLPDEIMEGSPIRSREISL 358 (471)
T ss_pred C-CCCceEEEECCCccccccccccccCCccccccceeEEEEcccccc-CC----CCcCChhhcCCCCCCCCCcceEEEEe
Confidence 6 4456677765321111111111 11111110000 00 000000000000000000000 0000
Q ss_pred CCCCCCCCeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEeecCcccce---ee
Q 046746 185 GKLLGKPDGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQ---NE 261 (561)
Q Consensus 185 ~~~~~~~~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p---~~ 261 (561)
+ .+.+.|||+.+. ...+.++++.|++++|+|.|. ..|.||||+|.|+|++.||....+ ..
T Consensus 359 ~-----~~~~~INg~~~~---------~~~~~~~~~~g~~e~W~~~n~---~~HP~HlHg~~FqVl~~~G~~~~~~~~gw 421 (471)
T PRK10883 359 G-----DDLPGINGALWD---------MNRIDVTAQQGTWERWTVRAD---MPQAFHIEGVMFLIRNVNGAMPFPEDRGW 421 (471)
T ss_pred c-----CCcCccCCcccC---------CCcceeecCCCCEEEEEEECC---CCcCEeECCccEEEEEecCCCCCccccCc
Confidence 1 123479999861 112457899999999999886 357999999999999999986543 45
Q ss_pred eeeEEEcccceEEEEEEeCCCCC---ceEEEEEee
Q 046746 262 YESLDVHVGQCFTVLVTANQDPK---DYYLIASTR 293 (561)
Q Consensus 262 ~~~v~l~pgeR~dv~v~~~~~~g---~y~i~~~~~ 293 (561)
.|+|.+ + +++.|++++++..+ .|.++++..
T Consensus 422 kDTV~v-~-~~v~i~~~f~~~~~~~~~~m~HCHiL 454 (471)
T PRK10883 422 KDTVWV-D-GQVELLVYFGQPSWAHFPFLFYSQTL 454 (471)
T ss_pred CcEEEc-C-CeEEEEEEecCCCCCCCcEEeecccc
Confidence 799999 3 57999999995444 688888754
No 29
>PLN02354 copper ion binding / oxidoreductase
Probab=99.05 E-value=1e-08 Score=111.38 Aligned_cols=233 Identities=12% Similarity=0.077 Sum_probs=139.8
Q ss_pred CeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEE-eecCcccceeeeeeEEEccc
Q 046746 192 DGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLV-EMEGSHVVQNEYESLDVHVG 270 (561)
Q Consensus 192 ~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~~~v~l~pg 270 (561)
..++|||+.. .|.|+++.|+++++++.|.... ...+|.||..+.-. ..||.+. ..-.|.||
T Consensus 47 ~~~~iNGq~P------------GP~I~~~~GD~v~V~v~N~l~~-~ttiHWHGi~q~~~~~~DGv~~-----TQcpI~PG 108 (552)
T PLN02354 47 QVILINGQFP------------GPNINSTSNNNIVINVFNNLDE-PFLLTWSGIQQRKNSWQDGVPG-----TNCPIPPG 108 (552)
T ss_pred EEEEECCCCc------------CCcEEEeCCCEEEEEEEECCCC-CcccccccccCCCCcccCCCcC-----CcCCCCCC
Confidence 4899999974 4999999999999999999864 33666666544322 4799652 23489999
Q ss_pred ceEEEEEEeCCCCCceEEEEEeeccCCc-ceeEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccccCCCCCCC
Q 046746 271 QCFTVLVTANQDPKDYYLIASTRFTRTV-ITTTAIVRYSDSKGLASPDLPKAPVGWDWSLNQFRSFRWNLTASAARPNPQ 349 (561)
Q Consensus 271 eR~dv~v~~~~~~g~y~i~~~~~~~~~~-~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~~~~~~p~p~ 349 (561)
+.+...+++.+.+|+||.+++.. .|. ....+-|.+.+... .+.|-...+. +....+..-.... .
T Consensus 109 ~sf~Y~F~~~~q~GT~WYHsH~~--~Q~~~Gl~G~lII~~~~~---~~~p~~~~d~--------e~~l~l~Dw~~~~--~ 173 (552)
T PLN02354 109 TNFTYHFQPKDQIGSYFYYPSTG--MHRAAGGFGGLRVNSRLL---IPVPYADPED--------DYTVLIGDWYTKS--H 173 (552)
T ss_pred CcEEEEEEeCCCCcceEEecCcc--ceecCCccceEEEcCCcC---CCCCCCCcCc--------eEEEEeeeeccCC--H
Confidence 99999999864689999998743 221 12233333332211 0111100000 0000000000000 0
Q ss_pred CCCCcCCcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchhhhhhcCCCCcccccCCCCCCCCcccccccccceEEe
Q 046746 350 GSFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEYYGIPEEVFKYNVISDKPADEIENVTLQPNVMD 429 (561)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 429 (561)
.. ....+.... .........|||+..... ......+.
T Consensus 174 ~~-------~~~~~~~g~---~~~~~d~~liNG~~~~~~---------------------------------~~~~~~~~ 210 (552)
T PLN02354 174 TA-------LKKFLDSGR---TLGRPDGVLINGKSGKGD---------------------------------GKDEPLFT 210 (552)
T ss_pred HH-------HHHHHhcCC---CCCCCCeEEEeCCcCCCC---------------------------------CCCceEEE
Confidence 00 000000000 000011256777531100 01234578
Q ss_pred cCCCcEEEEEEEcCC-CCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCC-cceee
Q 046746 430 ATYKAFMEIVLENRQ-NTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDN-AGMWN 507 (561)
Q Consensus 430 ~~~g~~ve~vl~N~~-~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adn-pG~w~ 507 (561)
++.|+++.|+|+|.+ ....-|||.||.|+||+.+... ..|...|++.|.+|+.+.+.++++. +|.|-
T Consensus 211 v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~-----------v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~ 279 (552)
T PLN02354 211 MKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSH-----------VLQNDYDSLDVHVGQCFSVLVTANQAPKDYY 279 (552)
T ss_pred ECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcc-----------cCCcceeEEEEccCceEEEEEECCCCCCcEE
Confidence 899999999999988 5579999999999999996432 2245569999999999999999975 78877
Q ss_pred eecc
Q 046746 508 LRSN 511 (561)
Q Consensus 508 ~HCH 511 (561)
+.-.
T Consensus 280 i~a~ 283 (552)
T PLN02354 280 MVAS 283 (552)
T ss_pred EEEe
Confidence 7655
No 30
>PLN02168 copper ion binding / pectinesterase
Probab=99.01 E-value=2.2e-08 Score=108.41 Aligned_cols=219 Identities=13% Similarity=0.125 Sum_probs=131.7
Q ss_pred CeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEE-eecCcccceeeeeeEEEccc
Q 046746 192 DGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLV-EMEGSHVVQNEYESLDVHVG 270 (561)
Q Consensus 192 ~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~~~v~l~pg 270 (561)
..++|||+.. .|.|+++.|+++++++.|--... ..+|.||..+.-- ..||.+- .+-.|.||
T Consensus 46 ~~~~vNG~~P------------GP~I~~~~GD~v~V~v~N~L~~~-ttiHWHGl~~~~~~~~DGv~g-----tQcpI~PG 107 (545)
T PLN02168 46 QVIVINDMFP------------GPLLNATANDVINVNIFNNLTEP-FLMTWNGLQLRKNSWQDGVRG-----TNCPILPG 107 (545)
T ss_pred EEEEECCcCC------------CCcEEEECCCEEEEEEEeCCCCC-ccEeeCCccCCCCCCcCCCCC-----CcCCCCCC
Confidence 4789999974 49999999999999999998754 4777777544322 2599653 22479999
Q ss_pred ceEEEEEEeCCCCCceEEEEEeeccCC-cceeEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccccCCCCCCC
Q 046746 271 QCFTVLVTANQDPKDYYLIASTRFTRT-VITTTAIVRYSDSKGLASPDLPKAPVGWDWSLNQFRSFRWNLTASAARPNPQ 349 (561)
Q Consensus 271 eR~dv~v~~~~~~g~y~i~~~~~~~~~-~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~~~~~~p~p~ 349 (561)
+++...+++++.+|+||.+++.. .| .....+.|...+... ...+.+..-.+.. + .+..-.... .
T Consensus 108 ~sftY~F~~~~q~GT~WYHsH~~--~Q~~~GL~G~lII~~~~~-~~~p~~~~d~e~~--------l--~l~Dw~~~~--~ 172 (545)
T PLN02168 108 TNWTYRFQVKDQIGSYFYFPSLL--LQKAAGGYGAIRIYNPEL-VPVPFPKPDEEYD--------I--LIGDWFYAD--H 172 (545)
T ss_pred CcEEEEEEeCCCCceEEEecChh--hhhhCcceeEEEEcCCcc-cCcCcCcccceee--------E--EEEecCCCC--H
Confidence 99999999865699999999843 22 122333333333221 0011111000000 0 000000000 0
Q ss_pred CCCCcCCcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchhhhhhcCCCCcccccCCCCCCCCcccccccccceEEe
Q 046746 350 GSFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEYYGIPEEVFKYNVISDKPADEIENVTLQPNVMD 429 (561)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 429 (561)
.. .... +..... ....-...|||+.- ....+.
T Consensus 173 ~~-------~~~~--~~~g~~-~~~~d~~liNG~~~--------------------------------------~~~~~~ 204 (545)
T PLN02168 173 TV-------MRAS--LDNGHS-LPNPDGILFNGRGP--------------------------------------EETFFA 204 (545)
T ss_pred HH-------HHhh--hhcCCC-CCCCCEEEEeccCC--------------------------------------CcceEE
Confidence 00 0000 000000 00001245565421 012467
Q ss_pred cCCCcEEEEEEEcCCC-CCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCC
Q 046746 430 ATYKAFMEIVLENRQN-TMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDN 502 (561)
Q Consensus 430 ~~~g~~ve~vl~N~~~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adn 502 (561)
++.|+++.|+|+|.+. ..+-|+|.||+|+|++.+.. + ..|..-|++.|.+|+.+.+.+.+++
T Consensus 205 v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~-~----------v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 205 FEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGT-Y----------VQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred eCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCe-E----------CCCceeeEEEEcCCceEEEEEEcCC
Confidence 8889999999999874 46999999999999998643 2 2355679999999999999999964
No 31
>PLN02792 oxidoreductase
Probab=98.99 E-value=2.6e-08 Score=107.70 Aligned_cols=228 Identities=14% Similarity=0.133 Sum_probs=134.9
Q ss_pred CeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEE-eecCcccceeeeeeEEEccc
Q 046746 192 DGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLV-EMEGSHVVQNEYESLDVHVG 270 (561)
Q Consensus 192 ~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~~~v~l~pg 270 (561)
..++|||+.. .|.|+++.|+++++++.|-... ...+|.||..+.-- ..||.+. + +-.|.||
T Consensus 36 ~~~~vNGq~P------------GP~I~~~~GD~v~V~v~N~L~~-~ttiHWHGl~q~~~~~~DGv~~----t-qcPI~PG 97 (536)
T PLN02792 36 RGILINGQFP------------GPEIRSLTNDNLVINVHNDLDE-PFLLSWNGVHMRKNSYQDGVYG----T-TCPIPPG 97 (536)
T ss_pred EEEEECCCCC------------CCcEEEECCCEEEEEEEeCCCC-CcCEeCCCcccCCCCccCCCCC----C-cCccCCC
Confidence 4799999974 4999999999999999999763 33555555443322 2799643 1 2489999
Q ss_pred ceEEEEEEeCCCCCceEEEEEeeccCCcceeEE-EEEecCCCCCCCCCCCCCCCCccccccccccccccccccCCCCCCC
Q 046746 271 QCFTVLVTANQDPKDYYLIASTRFTRTVITTTA-IVRYSDSKGLASPDLPKAPVGWDWSLNQFRSFRWNLTASAARPNPQ 349 (561)
Q Consensus 271 eR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~a-il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~~~~~~p~p~ 349 (561)
+.+..-+++++.+|+||.+++..... .....+ ++.+.....+ .+.+. + +.+ +...+..-.... .
T Consensus 98 ~sftY~F~~~~q~GT~WYHsH~~~q~-~~Gl~G~liI~~~~~~~--~p~~~-~-d~e--------~~i~l~Dw~~~~--~ 162 (536)
T PLN02792 98 KNYTYDFQVKDQVGSYFYFPSLAVQK-AAGGYGSLRIYSLPRIP--VPFPE-P-AGD--------FTFLIGDWYRRN--H 162 (536)
T ss_pred CcEEEEEEeCCCccceEEecCcchhh-hcccccceEEeCCcccC--cCCCc-c-cce--------eEEEecccccCC--H
Confidence 99999999865699999999853211 112222 3233221110 11111 0 000 000000000000 0
Q ss_pred CCCCcCCcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchhhhhhcCCCCcccccCCCCCCCCcccccccccceEEe
Q 046746 350 GSFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEYYGIPEEVFKYNVISDKPADEIENVTLQPNVMD 429 (561)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 429 (561)
.. ....+..... .....-...|||+... ....+.
T Consensus 163 ~~-------~~~~~~~g~~--~~~~~d~~liNG~~~~-------------------------------------~~~~~~ 196 (536)
T PLN02792 163 TT-------LKKILDGGRK--LPLMPDGVMINGQGVS-------------------------------------YVYSIT 196 (536)
T ss_pred HH-------HHHHhhccCc--CCCCCCEEEEeccCCC-------------------------------------CcceEE
Confidence 00 0000000000 0000112456665310 112467
Q ss_pred cCCCcEEEEEEEcCCC-CCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCC-cceee
Q 046746 430 ATYKAFMEIVLENRQN-TMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDN-AGMWN 507 (561)
Q Consensus 430 ~~~g~~ve~vl~N~~~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adn-pG~w~ 507 (561)
++.|+++.|+|+|.+. ...-|+|.||.|.|++.+... ..|...|++.|.+|+.+.+.++++. +|.|-
T Consensus 197 v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~-----------v~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~ 265 (536)
T PLN02792 197 VDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTH-----------TVQSMYTSLDIHVGQTYSVLVTMDQPPQNYS 265 (536)
T ss_pred ECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCcc-----------CCCcceeEEEEccCceEEEEEEcCCCCceEE
Confidence 8899999999999884 568999999999999996432 2245569999999999999999976 57766
Q ss_pred ee
Q 046746 508 LR 509 (561)
Q Consensus 508 ~H 509 (561)
+.
T Consensus 266 i~ 267 (536)
T PLN02792 266 IV 267 (536)
T ss_pred EE
Confidence 55
No 32
>PLN02991 oxidoreductase
Probab=98.97 E-value=2.7e-08 Score=107.55 Aligned_cols=225 Identities=12% Similarity=0.084 Sum_probs=134.7
Q ss_pred CeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccE-EEeecCcccceeeeeeEEEccc
Q 046746 192 DGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMK-LVEMEGSHVVQNEYESLDVHVG 270 (561)
Q Consensus 192 ~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~-via~DG~~~~p~~~~~v~l~pg 270 (561)
..++|||+.. .|.|+++.|+++++++.|.-.. ...+|.||..+. --..||.+. + .-.|.||
T Consensus 48 ~~~~vNG~~P------------GP~I~~~~GD~v~V~V~N~L~~-~ttiHWHGi~q~~~~~~DGv~~----t-QcpI~PG 109 (543)
T PLN02991 48 QGILINGKFP------------GPDIISVTNDNLIINVFNHLDE-PFLISWSGIRNWRNSYQDGVYG----T-TCPIPPG 109 (543)
T ss_pred EEEEEcCCCC------------CCcEEEECCCEEEEEecCCCCC-CccEEECCcccCCCccccCCCC----C-CCccCCC
Confidence 4799999975 4999999999999999999864 446777776543 234799643 1 3479999
Q ss_pred ceEEEEEEeCCCCCceEEEEEeeccCCcceeEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccccCCCCCCCC
Q 046746 271 QCFTVLVTANQDPKDYYLIASTRFTRTVITTTAIVRYSDSKGLASPDLPKAPVGWDWSLNQFRSFRWNLTASAARPNPQG 350 (561)
Q Consensus 271 eR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~~~~~~p~p~~ 350 (561)
+.+..-+++++.+|+||.+++..... .....+-|.+.+... .+.|....+. +....+..-.... ..
T Consensus 110 ~sftY~F~~~~q~GT~WYHsH~~~q~-~~Gl~G~lIV~~~~~---~~~p~~~~d~--------d~~i~l~DW~~~~--~~ 175 (543)
T PLN02991 110 KNYTYALQVKDQIGSFYYFPSLGFHK-AAGGFGAIRISSRPL---IPVPFPAPAD--------DYTVLIGDWYKTN--HK 175 (543)
T ss_pred CcEEEEEEeCCCCcceEEecCcchhh-hCCCeeeEEEeCCcc---cCcccccccc--------eeEEEecceecCC--HH
Confidence 99999999865699999999853221 112233333332211 1111100000 0000000000000 00
Q ss_pred CCCcCCcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchhhhhhcCCCCcccccCCCCCCCCcccccccccceEEec
Q 046746 351 SFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEYYGIPEEVFKYNVISDKPADEIENVTLQPNVMDA 430 (561)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 430 (561)
. ....+ ... ....-.-...|||+.. ...+.+
T Consensus 176 ~-------~~~~~--~~~-~~~~~~d~~liNG~~~---------------------------------------~~~~~v 206 (543)
T PLN02991 176 D-------LRAQL--DNG-GKLPLPDGILINGRGS---------------------------------------GATLNI 206 (543)
T ss_pred H-------HHHHh--hcC-CCCCCCCEEEEccCCC---------------------------------------CceEEE
Confidence 0 00000 000 0000001234555421 124678
Q ss_pred CCCcEEEEEEEcCCCC-CCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCc-c-eee
Q 046746 431 TYKAFMEIVLENRQNT-MQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNA-G-MWN 507 (561)
Q Consensus 431 ~~g~~ve~vl~N~~~~-~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnp-G-~w~ 507 (561)
+.|+++.|+|+|.+.. .+-|+|.||.|+|++.+.. + ..|...|++.|.+|+.+.+.+.+|.+ | .|+
T Consensus 207 ~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~-~----------~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i 275 (543)
T PLN02991 207 EPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGT-H----------TIQTPFSSLDVHVGQSYSVLITADQPAKDYYI 275 (543)
T ss_pred CCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCc-c----------ccceeeeEEEEcCCcEEEEEEECCCCCCcEEE
Confidence 8999999999998854 6899999999999999643 2 23566799999999999999999774 6 344
Q ss_pred e
Q 046746 508 L 508 (561)
Q Consensus 508 ~ 508 (561)
.
T Consensus 276 ~ 276 (543)
T PLN02991 276 V 276 (543)
T ss_pred E
Confidence 3
No 33
>PLN02604 oxidoreductase
Probab=98.93 E-value=6e-09 Score=114.11 Aligned_cols=89 Identities=13% Similarity=0.113 Sum_probs=70.8
Q ss_pred EecCCCcEEEEEEEcCC-CCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCccee
Q 046746 428 MDATYKAFMEIVLENRQ-NTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAGMW 506 (561)
Q Consensus 428 ~~~~~g~~ve~vl~N~~-~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG~w 506 (561)
+.++.|+++++.+.|.. ...|+||+||... .+. .|.. .........|+||+..+++|.++++|.|
T Consensus 57 i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~--~~~---~~~D---------G~~~~tq~~i~pg~s~~y~f~~~~~Gt~ 122 (566)
T PLN02604 57 ILAQQGDTVIVELKNSLLTENVAIHWHGIRQ--IGT---PWFD---------GTEGVTQCPILPGETFTYEFVVDRPGTY 122 (566)
T ss_pred EEEECCCEEEEEEEeCCCCCCCCEEeCCCCC--CCC---cccc---------CCCccccCccCCCCeEEEEEEcCCCEEE
Confidence 56789999999999986 5789999999942 111 0100 0011244578999999999999999999
Q ss_pred eeecccchhhhccceEEEEEecCC
Q 046746 507 NLRSNIWERNYLGQQLYLSVRLHK 530 (561)
Q Consensus 507 ~~HCHil~H~d~GMm~~~~V~~~~ 530 (561)
.||||...|...||+..+.|.+++
T Consensus 123 wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 123 LYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred EEeeCcHHHHhCCCeEEEEEEecC
Confidence 999999999999999999998764
No 34
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.87 E-value=2e-07 Score=101.63 Aligned_cols=231 Identities=13% Similarity=0.177 Sum_probs=138.4
Q ss_pred CeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEE-eecCcccceeeeeeEEEccc
Q 046746 192 DGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLV-EMEGSHVVQNEYESLDVHVG 270 (561)
Q Consensus 192 ~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~~~v~l~pg 270 (561)
..++|||+.. .|.|+++.|+++++++.|-... ...+|.||..+..- ..||.+. ..-.|.||
T Consensus 49 ~vi~vNGq~P------------GPtI~~~~GD~v~V~V~N~L~~-~ttIHWHGl~q~~t~w~DGv~~-----TQcPI~PG 110 (596)
T PLN00044 49 EAIGINGQFP------------GPALNVTTNWNLVVNVRNALDE-PLLLTWHGVQQRKSAWQDGVGG-----TNCAIPAG 110 (596)
T ss_pred EEEEEcCcCC------------CCcEEEECCCEEEEEEEeCCCC-CccEEECCccCCCCccccCCCC-----CcCCcCCC
Confidence 4799999974 4999999999999999999874 44778888665433 4799642 33589999
Q ss_pred ceEEEEEEeCCCCCceEEEEEeeccCCcceeEEEEEecCCCCCCCCCCCCCCC--Cc-----cccccccccccccccccC
Q 046746 271 QCFTVLVTANQDPKDYYLIASTRFTRTVITTTAIVRYSDSKGLASPDLPKAPV--GW-----DWSLNQFRSFRWNLTASA 343 (561)
Q Consensus 271 eR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~--~~-----~~~~~~~~~~~~~l~~~~ 343 (561)
+.+..-+++++.+|+||.+++..... .....+-|.+.+... .+.+.+. +. +. +|.......+...+.
T Consensus 111 ~sftY~F~~~dq~GT~WYHsH~~~Q~-~~Gl~GalII~~~~~-~~~P~~~-~~~~e~~i~l~DW~~~~~~~~~~~l~--- 184 (596)
T PLN00044 111 WNWTYQFQVKDQVGSFFYAPSTALHR-AAGGYGAITINNRDV-IPIPFGF-PDGGDITLFIADWYARDHRALRRALD--- 184 (596)
T ss_pred CcEEEEEEeCCCCceeEeeccchhhh-hCcCeeEEEEcCccc-ccccccC-CcccceEEEecccccCCHHHHHHHHh---
Confidence 99999999965799999999753211 112233333333211 0011110 00 00 111000000000000
Q ss_pred CCCCCCCCCCcCCcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchhhhhhcCCCCcccccCCCCCCCCcccccccc
Q 046746 344 ARPNPQGSFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEYYGIPEEVFKYNVISDKPADEIENVTL 423 (561)
Q Consensus 344 ~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 423 (561)
..... .......|||+.-... ++... +. ..
T Consensus 185 ---------------------~g~~~---~~~d~~lING~g~~~~-----------------n~~~~---~~------~~ 214 (596)
T PLN00044 185 ---------------------AGDLL---GAPDGVLINAFGPYQY-----------------NDSLV---PP------GI 214 (596)
T ss_pred ---------------------cCCCC---CCCCceEEcccCcccc-----------------CCccc---cC------CC
Confidence 00000 0001123555421000 00000 00 01
Q ss_pred cceEEecCCCcEEEEEEEcCC-CCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCC
Q 046746 424 QPNVMDATYKAFMEIVLENRQ-NTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDN 502 (561)
Q Consensus 424 ~~~~~~~~~g~~ve~vl~N~~-~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adn 502 (561)
...++.++.|+++.|+|+|.+ ...--|+|-||+|.|++.+ |.+ ..|..-|++.|.+|+.+.+.+++|.
T Consensus 215 ~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~D-G~~----------v~P~~vd~i~I~~GQRydVLV~a~q 283 (596)
T PLN00044 215 TYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAE-GSY----------TSQQNYTNLDIHVGQSYSFLLTMDQ 283 (596)
T ss_pred ccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeC-Ccc----------cCceeeeeEEEcCCceEEEEEECCC
Confidence 123688999999999999987 5678899999999999996 322 2467789999999999999999987
Q ss_pred c-c--eee
Q 046746 503 A-G--MWN 507 (561)
Q Consensus 503 p-G--~w~ 507 (561)
+ | .|+
T Consensus 284 ~~~~~Y~i 291 (596)
T PLN00044 284 NASTDYYV 291 (596)
T ss_pred CCCCceEE
Confidence 5 5 466
No 35
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.86 E-value=1.6e-07 Score=102.42 Aligned_cols=235 Identities=13% Similarity=0.144 Sum_probs=138.7
Q ss_pred CeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEE-EeecCcccceeeeeeEEEccc
Q 046746 192 DGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKL-VEMEGSHVVQNEYESLDVHVG 270 (561)
Q Consensus 192 ~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~~~v~l~pg 270 (561)
..++|||+.. .|.|+++.|+++++++.|.-......+|.||..+.- -..||.+.. .+-.|.||
T Consensus 28 ~~~~~NG~~P------------GP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~v----TQcpI~PG 91 (538)
T TIGR03390 28 YSVVVNGTSP------------GPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLA----SQWPIPPG 91 (538)
T ss_pred EEEEECCcCC------------CCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCccc----ccCCCCCC
Confidence 4799999974 499999999999999999865445577777765432 247997632 22358899
Q ss_pred ceEEEEEEeC-CCCCceEEEEEeeccCCcceeEEEEEecCCCCCCCCCCCCCCCCccccccccccccccccccCCCCCCC
Q 046746 271 QCFTVLVTAN-QDPKDYYLIASTRFTRTVITTTAIVRYSDSKGLASPDLPKAPVGWDWSLNQFRSFRWNLTASAARPNPQ 349 (561)
Q Consensus 271 eR~dv~v~~~-~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~~~~~~p~p~ 349 (561)
+.+...++++ ..+|+||.+++... |.....+.|.+.+... .+.. .+.+ ....+..-...+ .
T Consensus 92 ~sf~Y~f~~~~~q~GT~WYHsH~~~--Q~~~l~G~lIV~~~~~---~~~~---~d~e--------~~l~l~Dw~~~~--~ 153 (538)
T TIGR03390 92 HFFDYEIKPEPGDAGSYFYHSHVGF--QAVTAFGPLIVEDCEP---PPYK---YDDE--------RILLVSDFFSAT--D 153 (538)
T ss_pred CcEEEEEEecCCCCeeeEEecCCch--hhhcceeEEEEccCCc---cCCC---ccCc--------EEEEEeCCCCCC--H
Confidence 9999998875 36899999988532 2222444444443211 0110 0000 000000000000 0
Q ss_pred CCCCcCCcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchhhhhhcCCCCcccccCCCCCCCCcccccccccceEEe
Q 046746 350 GSFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEYYGIPEEVFKYNVISDKPADEIENVTLQPNVMD 429 (561)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 429 (561)
+.+ ...+ ...............|||+......... . + .. ..| ....+.
T Consensus 154 ~~~-------~~~~-~~~~~~~~~~~d~~liNG~~~~~~~~~~-------~-----~-------~~----~~~-~~~~~~ 201 (538)
T TIGR03390 154 EEI-------EQGL-LSTPFTWSGETEAVLLNGKSGNKSFYAQ-------I-----N-------PS----GSC-MLPVID 201 (538)
T ss_pred HHH-------Hhhh-hccCCccCCCCceEEECCcccccccccc-------c-----c-------CC----CCC-cceEEE
Confidence 000 0000 0000000001123567886421110000 0 0 00 011 134678
Q ss_pred cCCCcEEEEEEEcCCC-CCCceeecCCc-eEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCc
Q 046746 430 ATYKAFMEIVLENRQN-TMQSWILDGYA-FFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNA 503 (561)
Q Consensus 430 ~~~g~~ve~vl~N~~~-~~HP~HlHG~~-F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnp 503 (561)
++.|+++.|+|+|.+. ...-|+|.||. |+|++.++. +..|...|++.|.+|+.+.|.+.++.+
T Consensus 202 v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~-----------~~~P~~v~~l~l~~GqRydVlv~~~~~ 266 (538)
T TIGR03390 202 VEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGS-----------YTKPAKIDHLQLGGGQRYSVLFKAKTE 266 (538)
T ss_pred ECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCC-----------CCCceEeCeEEEccCCEEEEEEECCCc
Confidence 9999999999999884 46899999999 999999643 234677899999999999999999763
No 36
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.85 E-value=7.4e-08 Score=103.32 Aligned_cols=230 Identities=17% Similarity=0.148 Sum_probs=143.0
Q ss_pred CeeeeEEEECCcCCCCeEEecCCCEEEEEEEeCC-CCCeeeeeCCccCCCCCCCCCCCc----c-CCccCCCCeEEEEEE
Q 046746 44 GIPQQGILINGQFPGPNINSTTNDNLVINVFNKL-DEPFLLTWPGIQHKKNSWQDGVLG----T-NCPIPPGKNYTYYLQ 117 (561)
Q Consensus 44 G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l-~~~~~iH~HG~~~~~~~~~DGv~~----~-q~~i~PG~~~~Y~f~ 117 (561)
|.......+||+. -|.+. .++..+++|+.|.- .....+++.|..... ...||.+. + +..+.|||+++...+
T Consensus 186 ~~~g~~~~vnG~~-~p~~~-~~~g~~rlRl~n~~~~~~~~~~~~~~~~~V-i~~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAI-LPFKA-VPGGVVRLRLLNAGNARTYHLALGGGPLTV-IAVDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCc-cceee-cCCCeEEEEEEecCCceEEEEEecCceEEE-EEeCCcCcCceeeeeEEecCcceEEEEEE
Confidence 4455566777743 35454 45555999999998 666777777655443 45677652 2 667999999999998
Q ss_pred ecCceeeeeEecCchhhhccCceeEEEEecCCCCCCCCCCCCCCceEEEecce-eecchHHhhhh-hcCC----C-----
Q 046746 118 VKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSVVPVPYNRFVEDDFTLLIGDW-YTRSHVELGKQ-LDSG----K----- 186 (561)
Q Consensus 118 ~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~~e~~l~~~d~-~~~~~~~~~~~-~~~~----~----- 186 (561)
.++ .|++-+.|.. .+..+-+.+..-....... ++.. .+.+......|- ........... .+.+ .
T Consensus 263 ~~~-~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (451)
T COG2132 263 MND-GGAVTLTALG-EDMPDTLKGFRAPNPILTP--SYPV-LNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLI 337 (451)
T ss_pred cCC-CCeEEEEecc-ccCCceeeeeecccccccc--cccc-ccccccCCCcchhhccccccchhhcCCCcccccccchhh
Confidence 643 7888888876 2333333333222221100 0000 011111111110 00000000000 0000 0
Q ss_pred CCCCCCeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEeecCccc---ceeeee
Q 046746 187 LLGKPDGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHV---VQNEYE 263 (561)
Q Consensus 187 ~~~~~~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~---~p~~~~ 263 (561)
.......+.+||+.+. .+...+.++.|++++|+|.|-+. -.|.||+||+.|+|++.| ... .+...|
T Consensus 338 ~~~~~~~~~~n~~~~~---------~~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kD 406 (451)
T COG2132 338 GGIGGYVWAINGKAFD---------DNRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKD 406 (451)
T ss_pred cccccccccccCccCC---------CCcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccce
Confidence 0012246888888861 12477899999999999999998 667999999999999998 222 346789
Q ss_pred eEEEcccceEEEEEEeCCCCCceEEEEEee
Q 046746 264 SLDVHVGQCFTVLVTANQDPKDYYLIASTR 293 (561)
Q Consensus 264 ~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 293 (561)
++.+.|++|+.+.++++ .+|.|.++++..
T Consensus 407 Tv~v~~~~~~~v~~~a~-~~g~~~~HCH~l 435 (451)
T COG2132 407 TVLVAPGERLLVRFDAD-YPGPWMFHCHIL 435 (451)
T ss_pred EEEeCCCeEEEEEEeCC-CCCceEEeccch
Confidence 99999999999999998 788999999854
No 37
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.83 E-value=9.4e-08 Score=104.41 Aligned_cols=233 Identities=11% Similarity=0.091 Sum_probs=135.5
Q ss_pred CeEEecCCCEEEEEEEeCC-CCCeeeeeCCccCCCCCCCCCCCcc-----CCccCCCCeEEEEEEecCce-eeeeEecCc
Q 046746 59 PNINSTTNDNLVINVFNKL-DEPFLLTWPGIQHKKNSWQDGVLGT-----NCPIPPGKNYTYYLQVKDQI-GSYIYHPST 131 (561)
Q Consensus 59 P~i~v~~Gd~v~v~v~N~l-~~~~~iH~HG~~~~~~~~~DGv~~~-----q~~i~PG~~~~Y~f~~~~~~-Gt~wYH~H~ 131 (561)
++|.|++|+++++||.|.. .....++..|..+.. .+.||.+.. ...|.|||+++..+++.+.+ |.||.+.-.
T Consensus 203 ~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~V-Ia~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~ 281 (541)
T TIGR03388 203 QILHVEPGKTYRLRIASTTALAALNFAIEGHKLTV-VEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGV 281 (541)
T ss_pred eEEEECCCCEEEEEEEcccccceEEEEECCCEEEE-EEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEec
Confidence 3589999999999999987 456777777766543 578998642 44599999999999974334 589998654
Q ss_pred hhhhc-cCceeEEEEecCCCC-CCC---C---CCCCCC----ceEEEecce--eecchHHhhh--hh-cCCCCCCCCCeE
Q 046746 132 GFHRA-AGGFGGLCIHSRSVV-PVP---Y---NRFVED----DFTLLIGDW--YTRSHVELGK--QL-DSGKLLGKPDGV 194 (561)
Q Consensus 132 ~~q~~-~Gl~G~liV~~~~~~-~~~---~---~~~~~~----e~~l~~~d~--~~~~~~~~~~--~~-~~~~~~~~~~~~ 194 (561)
..+.. .....+++....... ..+ . ....+. +..+.+.+. .......... .+ ...........+
T Consensus 282 ~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (541)
T TIGR03388 282 RGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKW 361 (541)
T ss_pred ccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEE
Confidence 32211 111124444332111 000 0 000000 000000000 0000000000 00 000000111246
Q ss_pred EEcCccCCCC---------------CCCC-C--------------CCC----CCceEEEEcCCEEEEEEEEcCC-----C
Q 046746 195 LINGKSGRLD---------------YDSD-G--------------KGD----NEPLFTMKAGKVYKYRICNVGV-----K 235 (561)
Q Consensus 195 liNG~~~~~~---------------~~~~-~--------------~~~----~~p~~~v~~G~~~rlRliN~~~-----~ 235 (561)
.+||..+..- ++.. . ..+ ..-.+.++.|+++.+.|.|... .
T Consensus 362 ~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~ 441 (541)
T TIGR03388 362 AINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNS 441 (541)
T ss_pred EECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCC
Confidence 7888765200 0000 0 000 0134788999999999999753 3
Q ss_pred ceEEEEEeCcccEEEeec-Ccc-----------cceeeeeeEEEcccceEEEEEEeCCCCCceEEEEEee
Q 046746 236 TSLNFRIQGHTMKLVEME-GSH-----------VVQNEYESLDVHVGQCFTVLVTANQDPKDYYLIASTR 293 (561)
Q Consensus 236 ~~~~~~i~gh~~~via~D-G~~-----------~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 293 (561)
..|.||+|||.|+|++.. |.+ ..|...|++.+.++.-+-|-++++ +||.|.++++..
T Consensus 442 ~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~ad-NPG~W~~HCHi~ 510 (541)
T TIGR03388 442 ETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVAD-NPGVWAFHCHIE 510 (541)
T ss_pred CCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECC-CCeEeeeeccch
Confidence 468999999999999986 332 137778999999999998899998 899999999854
No 38
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.79 E-value=8e-09 Score=92.19 Aligned_cols=89 Identities=19% Similarity=0.253 Sum_probs=72.7
Q ss_pred CCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCC-------------Ccc--CCccCCCCeEEEEEEecCce
Q 046746 58 GPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGV-------------LGT--NCPIPPGKNYTYYLQVKDQI 122 (561)
Q Consensus 58 gP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv-------------~~~--q~~i~PG~~~~Y~f~~~~~~ 122 (561)
.+.+.++.|+.+++.+.|.......+|+||.........++. +.. ...|.||+..+.+|+. +.+
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~-~~~ 111 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA-DNP 111 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE-TST
T ss_pred cceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEe-ecc
Confidence 579999999999999999999999999999876422111111 111 3458999999999996 689
Q ss_pred eeeeEecCchhhhccCceeEEEEec
Q 046746 123 GSYIYHPSTGFHRAAGGFGGLCIHS 147 (561)
Q Consensus 123 Gt~wYH~H~~~q~~~Gl~G~liV~~ 147 (561)
|.|.||||...+...||.+.+.|.+
T Consensus 112 G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 112 GPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEEEEESSHHHHHTT-EEEEEECH
T ss_pred eEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999986
No 39
>PRK02710 plastocyanin; Provisional
Probab=98.75 E-value=1.4e-07 Score=81.69 Aligned_cols=74 Identities=19% Similarity=0.364 Sum_probs=54.4
Q ss_pred CCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCccCCccCCCCeEEEEEEecCceeeeeEecCchhhhcc
Q 046746 58 GPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTNCPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAA 137 (561)
Q Consensus 58 gP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~ 137 (561)
.+.|++++||+| +++|.-..++++.+.|.. +.......+.||++++|.|+. +|+|-|+|-. +...
T Consensus 46 P~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~--------~~~~~~~~~~pg~t~~~tF~~---~G~y~y~C~~--H~~~ 110 (119)
T PRK02710 46 PSTLTIKAGDTV--KWVNNKLAPHNAVFDGAK--------ELSHKDLAFAPGESWEETFSE---AGTYTYYCEP--HRGA 110 (119)
T ss_pred CCEEEEcCCCEE--EEEECCCCCceEEecCCc--------cccccccccCCCCEEEEEecC---CEEEEEEcCC--CccC
Confidence 478999999985 567876667777765431 100111347899999999982 8999999974 5558
Q ss_pred CceeEEEEe
Q 046746 138 GGFGGLCIH 146 (561)
Q Consensus 138 Gl~G~liV~ 146 (561)
||.|.|+|+
T Consensus 111 gM~G~I~V~ 119 (119)
T PRK02710 111 GMVGKITVE 119 (119)
T ss_pred CcEEEEEEC
Confidence 999999984
No 40
>PLN02191 L-ascorbate oxidase
Probab=98.65 E-value=2.2e-06 Score=94.05 Aligned_cols=250 Identities=15% Similarity=0.174 Sum_probs=139.1
Q ss_pred CeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEE-EeecCcccceeeeeeEEEccc
Q 046746 192 DGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKL-VEMEGSHVVQNEYESLDVHVG 270 (561)
Q Consensus 192 ~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~~~v~l~pg 270 (561)
..++|||+.. .|.|+++.|+++++++.|.-......+|.||....- -..||.+- +..-.|.||
T Consensus 43 ~v~~vNg~~p------------GP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~g----vtq~pI~PG 106 (574)
T PLN02191 43 AVMTVNGQFP------------GPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAG----VTQCAINPG 106 (574)
T ss_pred eEEEECCcCC------------CCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCc----cccCCcCCC
Confidence 5899999974 399999999999999999866455677888775432 13577652 222469999
Q ss_pred ceEEEEEEeCCCCCceEEEEEeeccCCcceeEEEEEecCCCCCCCCCCCCCCCCc-----cccccccccccccccccCCC
Q 046746 271 QCFTVLVTANQDPKDYYLIASTRFTRTVITTTAIVRYSDSKGLASPDLPKAPVGW-----DWSLNQFRSFRWNLTASAAR 345 (561)
Q Consensus 271 eR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~-----~~~~~~~~~~~~~l~~~~~~ 345 (561)
+.+...++++ .+|+||.+++..... .....+.|.+.+...+. .+..-. .+. +|...........+.. .
T Consensus 107 ~s~~Y~f~~~-~~GT~wYHsH~~~q~-~~Gl~G~liV~~~~~~~-~~~~~d-~e~~l~l~Dw~~~~~~~~~~~~~~---~ 179 (574)
T PLN02191 107 ETFTYKFTVE-KPGTHFYHGHYGMQR-SAGLYGSLIVDVAKGPK-ERLRYD-GEFNLLLSDWWHESIPSQELGLSS---K 179 (574)
T ss_pred CeEEEEEECC-CCeEEEEeeCcHHHH-hCCCEEEEEEccCCCCC-CCCCCC-eeEEEeeeccccCChHHHHHhhcc---C
Confidence 9999999997 699999999853211 11223333333221110 001000 000 1110000000000000 0
Q ss_pred CCCCCCCCcCCcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchhhhhhcCCCCcccccCCCCCCCCcccccccccc
Q 046746 346 PNPQGSFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEYYGIPEEVFKYNVISDKPADEIENVTLQP 425 (561)
Q Consensus 346 p~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 425 (561)
+ . +. ........|||+......... ...+...+..| .. .. | .....
T Consensus 180 ~--~-----------~~---------~~~~d~~liNG~g~~~~~~~~---~~~~~~~~~~~-~~----~~--n--~~~~p 225 (574)
T PLN02191 180 P--M-----------RW---------IGEAQSILINGRGQFNCSLAA---QFSNGTELPMC-TF----KE--G--DQCAP 225 (574)
T ss_pred C--C-----------Cc---------CCCCCceEECCCCCCCCcccc---cccCCcccccc-ee----cc--C--CCCCc
Confidence 0 0 00 000112345654311100000 00000000000 00 00 0 00112
Q ss_pred eEEecCCCcEEEEEEEcCC-CCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCC-c
Q 046746 426 NVMDATYKAFMEIVLENRQ-NTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDN-A 503 (561)
Q Consensus 426 ~~~~~~~g~~ve~vl~N~~-~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adn-p 503 (561)
.++.++.|+++.|+|+|.+ ...+-|+|.||+|.|++.++. +..|..-|++.|.+|+.+.+.++++. +
T Consensus 226 ~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~-----------~v~P~~v~~l~i~~GqRydVlV~a~~~~ 294 (574)
T PLN02191 226 QTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVEADGN-----------YITPFTTDDIDIYSGESYSVLLTTDQDP 294 (574)
T ss_pred eEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEEcCCe-----------eccceEeeeEEEcCCCeEEEEEECCCCC
Confidence 3688999999999999987 567999999999999999643 22467789999999999999999976 4
Q ss_pred c-eeeee
Q 046746 504 G-MWNLR 509 (561)
Q Consensus 504 G-~w~~H 509 (561)
| .|-++
T Consensus 295 ~~~y~ir 301 (574)
T PLN02191 295 SQNYYIS 301 (574)
T ss_pred CCCEEEE
Confidence 4 34433
No 41
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.63 E-value=7.7e-08 Score=81.36 Aligned_cols=89 Identities=18% Similarity=0.200 Sum_probs=48.0
Q ss_pred cCCCeEEEEEEEEEEEecCCCeeeeEEEECCcCCCCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCccC
Q 046746 24 AGSPTFFFTWNVTYGTISPLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTN 103 (561)
Q Consensus 24 a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q 103 (561)
..+.....++++++.. +-...|+++.|++|+|+++|.....+.+...++.. .
T Consensus 16 ~~~~~~~v~I~~~~~~----------------f~P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~------------~ 67 (104)
T PF13473_consen 16 SAAAAQTVTITVTDFG----------------FSPSTITVKAGQPVTLTFTNNDSRPHEFVIPDLGI------------S 67 (104)
T ss_dssp --------------EE----------------EES-EEEEETTCEEEEEEEE-SSS-EEEEEGGGTE------------E
T ss_pred cccccccccccccCCe----------------EecCEEEEcCCCeEEEEEEECCCCcEEEEECCCce------------E
Confidence 3445566666666553 33358999999999999999987776666666432 2
Q ss_pred CccCCCCeEEEEEEecCceeeeeEecCchhhhccCceeEEEE
Q 046746 104 CPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCI 145 (561)
Q Consensus 104 ~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV 145 (561)
..|.||++.++.|+ +.++|+|=|+|-.+. . |.|.|+|
T Consensus 68 ~~l~~g~~~~~~f~-~~~~G~y~~~C~~~~---~-m~G~liV 104 (104)
T PF13473_consen 68 KVLPPGETATVTFT-PLKPGEYEFYCTMHP---N-MKGTLIV 104 (104)
T ss_dssp EEE-TT-EEEEEEE-E-S-EEEEEB-SSS----T-TB-----
T ss_pred EEECCCCEEEEEEc-CCCCEEEEEEcCCCC---c-ceecccC
Confidence 46899999999998 578999999999776 2 6777775
No 42
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.60 E-value=1e-07 Score=82.13 Aligned_cols=89 Identities=12% Similarity=0.030 Sum_probs=67.7
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCC-cce
Q 046746 427 VMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDN-AGM 505 (561)
Q Consensus 427 ~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adn-pG~ 505 (561)
++.++.|+.|++.+.|.....+.+|.||...---...+|.. ... .-.|.||+..+.+|.++. +|.
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~-------~~~-------~~~i~pG~~~~Y~~~~~~~~Gt 92 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVP-------GVT-------QCPIAPGESFTYEFTANQQAGT 92 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGT-------TTS-------GSSBSTTEEEEEEEEESSCSEE
T ss_pred EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcc-------ccc-------ceeEEeecceeeeEeeeccccc
Confidence 57789999999999999989999999996641100001100 000 123778999999999988 999
Q ss_pred eeeecccchhhhccceEEEEEecC
Q 046746 506 WNLRSNIWERNYLGQQLYLSVRLH 529 (561)
Q Consensus 506 w~~HCHil~H~d~GMm~~~~V~~~ 529 (561)
|.||||...|...||...+.|++.
T Consensus 93 ~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 93 YWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eeEeeCCCchhcCcCEEEEEEcCC
Confidence 999999999878999999999764
No 43
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.36 E-value=3.3e-05 Score=83.63 Aligned_cols=227 Identities=15% Similarity=0.232 Sum_probs=138.3
Q ss_pred CeEEEcCccCCCCCCCCCCCCCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCccc-EEEeecCcccceeeeeeEEEccc
Q 046746 192 DGVLINGKSGRLDYDSDGKGDNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTM-KLVEMEGSHVVQNEYESLDVHVG 270 (561)
Q Consensus 192 ~~~liNG~~~~~~~~~~~~~~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~-~via~DG~~~~p~~~~~v~l~pg 270 (561)
..++|||+.. .|.|+++.|+++.++++|-.. ..+.+|.+|-+. .--..||.++. .=.|.||
T Consensus 48 ~vi~iNG~fP------------GP~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG~~~T-----qCPI~Pg 109 (563)
T KOG1263|consen 48 QVITINGQFP------------GPTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDGVYIT-----QCPIQPG 109 (563)
T ss_pred eeEeecCCCC------------CCeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccCCccc-----cCCcCCC
Confidence 4789999974 499999999999999999955 566777777543 33345994432 2368999
Q ss_pred ceEEEEEEeCCCCCceEEEEEeeccCCcceeEE-EEEecCCCCCCCCCCCCCCCCc-----ccccc-ccccccccccccC
Q 046746 271 QCFTVLVTANQDPKDYYLIASTRFTRTVITTTA-IVRYSDSKGLASPDLPKAPVGW-----DWSLN-QFRSFRWNLTASA 343 (561)
Q Consensus 271 eR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~a-il~y~~~~~~~~~~~p~~p~~~-----~~~~~-~~~~~~~~l~~~~ 343 (561)
|.|-.-++.++..|+||.+++..+.... ...+ ++.+.....+ .+.+..-.+. +|-.+ ....++..+....
T Consensus 110 ~~~tY~F~v~~q~GT~~yh~h~~~~Ra~-G~~G~liI~~~~~~p--~pf~~pd~E~~ill~dW~~~~~~~~l~~~~~~~~ 186 (563)
T KOG1263|consen 110 ENFTYRFTVKDQIGTLWYHSHVSWQRAT-GVFGALIINPRPGLP--VPFPKPDKEFTILLGDWYKNLNHKNLKNFLDRTG 186 (563)
T ss_pred CeEEEEEEeCCcceeEEEeecccccccc-CceeEEEEcCCccCC--CCCCCCCceeEEEeEeeccccCHHHHHHhhccCC
Confidence 9999999999889999999886533211 1233 3333222111 1222100010 11110 1111111000000
Q ss_pred CCCCCCCCCCcCCcCcceEEEEccceeccCCeEEEEEcCeeccCCCCchhhhhhcCCCCcccccCCCCCCCCcccccccc
Q 046746 344 ARPNPQGSFHYGGIPINRTIRLANTAHLVNGKVRFAVNGVSYVNSETPLKFAEYYGIPEEVFKYNVISDKPADEIENVTL 423 (561)
Q Consensus 344 ~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 423 (561)
..|.+ .-...|||.+- ....
T Consensus 187 ~~p~~--------------------------~D~~~iNg~~g----------------------------------~~~~ 206 (563)
T KOG1263|consen 187 ALPNP--------------------------SDGVLINGRSG----------------------------------FLYN 206 (563)
T ss_pred CCCCC--------------------------CCceEECCCCC----------------------------------cccC
Confidence 00000 01134555430 1123
Q ss_pred cceEEecCCCcEEEEEEEcCC--CCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeC
Q 046746 424 QPNVMDATYKAFMEIVLENRQ--NTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMD 501 (561)
Q Consensus 424 ~~~~~~~~~g~~ve~vl~N~~--~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~ad 501 (561)
|...+.+..|++..|+|.|.+ ...+ |.+=||.+.||..+ |.+. -|..-|++.|-+|++..+...||
T Consensus 207 ~~~~l~v~pGktY~lRiiN~g~~~~l~-F~I~~H~ltvVe~D-g~y~----------~p~~~~~l~i~~GQ~~~vLvtad 274 (563)
T KOG1263|consen 207 CTPTLTVEPGKTYRLRIINAGLNTSLN-FSIANHQLTVVEVD-GAYT----------KPFTTDSLDIHPGQTYSVLLTAD 274 (563)
T ss_pred ceeEEEEcCCCEEEEEEEccccccceE-EEECCeEEEEEEec-ceEE----------eeeeeceEEEcCCcEEEEEEeCC
Confidence 466788999999999999987 3445 99999999999996 3222 24456999999999999999997
Q ss_pred C-cc-eeeeecc
Q 046746 502 N-AG-MWNLRSN 511 (561)
Q Consensus 502 n-pG-~w~~HCH 511 (561)
. |+ .|+-=|=
T Consensus 275 q~~~~Y~i~~~~ 286 (563)
T KOG1263|consen 275 QSPGDYYIAASP 286 (563)
T ss_pred CCCCcEEEEEEe
Confidence 6 45 3554443
No 44
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.21 E-value=7.6e-06 Score=68.40 Aligned_cols=83 Identities=18% Similarity=0.289 Sum_probs=56.0
Q ss_pred CCCCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCc---cCCccCCCCeEEEEEEecCceeeeeEecCch
Q 046746 56 FPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLG---TNCPIPPGKNYTYYLQVKDQIGSYIYHPSTG 132 (561)
Q Consensus 56 ~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~---~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~ 132 (561)
|-...|++++||+| +++|.-..++++.++...... ...+..+. ....+.||+++++.|.. +|+|.|||.
T Consensus 14 F~P~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~-~~~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~-- 85 (99)
T TIGR02656 14 FEPAKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPA-GVKELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE-- 85 (99)
T ss_pred EeCCEEEECCCCEE--EEEECCCCCceEEECCCCCcc-chhhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC--
Confidence 33468999999986 556876666766665432110 00000000 02346899999999972 999999998
Q ss_pred hhhccCceeEEEEe
Q 046746 133 FHRAAGGFGGLCIH 146 (561)
Q Consensus 133 ~q~~~Gl~G~liV~ 146 (561)
.+...||.|.|+|+
T Consensus 86 ~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 86 PHRGAGMVGKITVE 99 (99)
T ss_pred CccccCCEEEEEEC
Confidence 57778999999985
No 45
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.09 E-value=9.2e-06 Score=74.29 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=77.6
Q ss_pred ceEEecCCCcEEEEEEEcCCC-CCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCC-
Q 046746 425 PNVMDATYKAFMEIVLENRQN-TMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDN- 502 (561)
Q Consensus 425 ~~~~~~~~g~~ve~vl~N~~~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adn- 502 (561)
..++.++.|+++.|+|+|.+. ..+.|++.||+|+|++.++.. ..|...|++.|.+|+.+.+.++++.
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~-----------v~p~~~~~l~l~~G~R~dvlv~~~~~ 127 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAADGVP-----------VEPYKVDTLVLAPGQRYDVLVTADQP 127 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEE-----------EEEEEESBEEE-TTEEEEEEEEECSC
T ss_pred cceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeecccc-----------ccccccceEEeeCCeEEEEEEEeCCC
Confidence 456889999999999999874 579999999999999996431 2267889999999999999999987
Q ss_pred cceeeeec----ccchhhhccceEEEEEec
Q 046746 503 AGMWNLRS----NIWERNYLGQQLYLSVRL 528 (561)
Q Consensus 503 pG~w~~HC----Hil~H~d~GMm~~~~V~~ 528 (561)
+|.|.+++ +...+...|+...+.+.+
T Consensus 128 ~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 128 PGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp SSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred CCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 99999999 666788889988887654
No 46
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.06 E-value=1.8e-05 Score=85.21 Aligned_cols=101 Identities=15% Similarity=0.091 Sum_probs=69.7
Q ss_pred EEecCCCeeeeE--EEECCcCCCCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCccCCccCCCCeEEEE
Q 046746 38 GTISPLGIPQQG--ILINGQFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTNCPIPPGKNYTYY 115 (561)
Q Consensus 38 ~~~~~dG~~~~~--~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~PG~~~~Y~ 115 (561)
..+.++|.+..+ ....-.|--+.|+|++||+|.++++|.-...-.+ ||+...+. | +..-+.||++.+..
T Consensus 532 ~~v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----n---I~~dv~PG~t~svt 602 (635)
T PRK02888 532 SKVIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----G---VNMEVAPQATASVT 602 (635)
T ss_pred cceEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----C---ccEEEcCCceEEEE
Confidence 446678766554 4556667566899999999999999943211122 45533211 1 12457899999999
Q ss_pred EEecCceeeeeEecCch-hhhccCceeEEEEecC
Q 046746 116 LQVKDQIGSYIYHPSTG-FHRAAGGFGGLCIHSR 148 (561)
Q Consensus 116 f~~~~~~Gt~wYH~H~~-~q~~~Gl~G~liV~~~ 148 (561)
|+ ++++|+|||||..- .....+|.|-|+|+++
T Consensus 603 F~-adkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 603 FT-ADKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred EE-cCCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 99 58899999999753 2222489999999873
No 47
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.98 E-value=3.7e-05 Score=61.96 Aligned_cols=76 Identities=13% Similarity=0.167 Sum_probs=52.9
Q ss_pred CCCCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCccCCccCCCCeEEEEEEecCceeeeeEecCchhhh
Q 046746 56 FPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTNCPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHR 135 (561)
Q Consensus 56 ~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~ 135 (561)
|-.+.|++++||+| +++|.-..++++++....- ...+-. ...+.||+++++.|+ ++|+|-|||-.|.
T Consensus 8 F~P~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~~---~~~~~~---~~~~~~g~~~~~tf~---~~G~y~y~C~~Hp-- 74 (83)
T TIGR02657 8 YETPELHVKVGDTV--TWINREAMPHNVHFVAGVL---GEAALK---GPMMKKEQAYSLTFT---EAGTYDYHCTPHP-- 74 (83)
T ss_pred EcCCEEEECCCCEE--EEEECCCCCccEEecCCCC---cccccc---ccccCCCCEEEEECC---CCEEEEEEcCCCC--
Confidence 33578999999996 5678877778887654311 001100 123578888888775 5999999998765
Q ss_pred ccCceeEEEEe
Q 046746 136 AAGGFGGLCIH 146 (561)
Q Consensus 136 ~~Gl~G~liV~ 146 (561)
+|.|.++|+
T Consensus 75 --~M~G~v~V~ 83 (83)
T TIGR02657 75 --FMRGKVVVE 83 (83)
T ss_pred --CCeEEEEEC
Confidence 399999985
No 48
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.96 E-value=1.5e-05 Score=66.55 Aligned_cols=79 Identities=22% Similarity=0.387 Sum_probs=53.7
Q ss_pred CCCCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCC------Cc-cCCccCCCCeEEEEEEecCceeeeeEe
Q 046746 56 FPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGV------LG-TNCPIPPGKNYTYYLQVKDQIGSYIYH 128 (561)
Q Consensus 56 ~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv------~~-~q~~i~PG~~~~Y~f~~~~~~Gt~wYH 128 (561)
|-...|++++||+| ++.|.-..++++.+=-- ....|. +. ....+.||+++++.|+ ++|+|.|+
T Consensus 14 F~P~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~-----~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~ 83 (99)
T PF00127_consen 14 FDPSEITVKAGDTV--TFVNNDSMPHNVVFVAD-----GMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYY 83 (99)
T ss_dssp EESSEEEEETTEEE--EEEEESSSSBEEEEETT-----SSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEE
T ss_pred EeCCEEEECCCCEE--EEEECCCCCceEEEecc-----cccccccccccCccccceecCCCCEEEEEeC---CCeEEEEE
Confidence 33578999999985 46665444555554210 000110 00 0124789999999998 69999999
Q ss_pred cCchhhhccCceeEEEEe
Q 046746 129 PSTGFHRAAGGFGGLCIH 146 (561)
Q Consensus 129 ~H~~~q~~~Gl~G~liV~ 146 (561)
|- . +...||.|.|+|+
T Consensus 84 C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 84 CT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp ET-T-TGGTTSEEEEEEE
T ss_pred cC-C-CcccCCEEEEEEC
Confidence 99 4 8888999999996
No 49
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.81 E-value=0.00015 Score=65.11 Aligned_cols=88 Identities=9% Similarity=-0.033 Sum_probs=58.1
Q ss_pred EEecCCCcEEEEEEEcCCC-CCCceeecCCceEE--EeecCCCCCcCCCCCCCCCCCCceeEEEeCC---C--cEEEEEE
Q 046746 427 VMDATYKAFMEIVLENRQN-TMQSWILDGYAFFA--VGMEPGTWNPDKRKSYNLIDAVSRYTIQVFP---N--CWAAILV 498 (561)
Q Consensus 427 ~~~~~~g~~ve~vl~N~~~-~~HP~HlHG~~F~V--l~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~---~--g~~~irf 498 (561)
.+.++.|+.|++++.|.+. ..|.|-||.+.-.. .....|. |..-..-.+|+ | ++..+.|
T Consensus 53 ~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~-------------~~~~~~~i~p~~~~g~~~~~~~tf 119 (148)
T TIGR03095 53 TIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGL-------------GFVAGTGFLPPPKSGKFGYTDFTY 119 (148)
T ss_pred EEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCC-------------CccccCcccCCCCCCccceeEEEE
Confidence 4778999999999999864 66777776432210 0000000 11111112222 2 2467888
Q ss_pred EeCCcceeeeecccchhhhccceEEEEEe
Q 046746 499 SMDNAGMWNLRSNIWERNYLGQQLYLSVR 527 (561)
Q Consensus 499 ~adnpG~w~~HCHil~H~d~GMm~~~~V~ 527 (561)
+++.+|.+.||||+..|...||-..+.|+
T Consensus 120 ~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 120 HFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred ECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 88899999999999999999999998873
No 50
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.77 E-value=0.00056 Score=61.58 Aligned_cols=95 Identities=18% Similarity=0.164 Sum_probs=69.4
Q ss_pred EEECCcCCC-CeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCC-------CCCCCC----CccC------CccCCCCe
Q 046746 50 ILINGQFPG-PNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKN-------SWQDGV----LGTN------CPIPPGKN 111 (561)
Q Consensus 50 ~~~Ng~~pg-P~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~-------~~~DGv----~~~q------~~i~PG~~ 111 (561)
+-|||+..| ++|.+..|=+|.|+|.|.-..++++-. -+.++ ...||. +|.+ ..|.+|++
T Consensus 75 fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~i---v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs 151 (195)
T TIGR03094 75 FNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKL---LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHS 151 (195)
T ss_pred ccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEE---ecCCCCCCCccccccCceeEeecccccCccccccccccce
Confidence 667887766 799999999999999998655544432 22222 234664 2221 34678888
Q ss_pred EEEEEEecCceeeeeEecCchhhhccCceeEEEEecC
Q 046746 112 YTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSR 148 (561)
Q Consensus 112 ~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 148 (561)
..=.|+ +-++|+|||-|-...+..+||+|-+||-+.
T Consensus 152 ~sg~~~-~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 152 RSGWWN-DTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred eEEEec-cCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 444444 578999999999999999999999999884
No 51
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.70 E-value=0.00055 Score=63.03 Aligned_cols=100 Identities=21% Similarity=0.188 Sum_probs=71.6
Q ss_pred eEEEECCcCCC-CeEEecCCCEEEEEEEeCCCCCeee--eeCCccC--CCCCCCCCC----Ccc------CCccCCCCeE
Q 046746 48 QGILINGQFPG-PNINSTTNDNLVINVFNKLDEPFLL--TWPGIQH--KKNSWQDGV----LGT------NCPIPPGKNY 112 (561)
Q Consensus 48 ~~~~~Ng~~pg-P~i~v~~Gd~v~v~v~N~l~~~~~i--H~HG~~~--~~~~~~DGv----~~~------q~~i~PG~~~ 112 (561)
..+-|||..-| ++|.+..|-+|.|+|+|.-.-++++ =--+-.+ ......||. +|. ...|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 36788887655 7999999999999999985433322 2122111 112345553 111 2358899999
Q ss_pred EEEEEecCceeeeeEecCchhhhccCceeEEEEecC
Q 046746 113 TYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSR 148 (561)
Q Consensus 113 ~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 148 (561)
.-.|. +-++|.|||=|-...|...||++-|+|.+.
T Consensus 154 ~~~~~-~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 154 SGVYN-DLPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred eEEEc-cCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 87775 347999999999999999999999999984
No 52
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.49 E-value=0.00058 Score=58.98 Aligned_cols=75 Identities=16% Similarity=0.164 Sum_probs=54.9
Q ss_pred CeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCccCCccCCCCeEEEEEEecCceeeeeEecCchhhhccC
Q 046746 59 PNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTNCPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAG 138 (561)
Q Consensus 59 P~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~G 138 (561)
-.|+|++||+ |++.|.-...++++.-+.. ..+|.- .....+|+++++.|. .+|+|-|+|-. ++..|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~-----~~~g~~--~~~~~~~~s~~~Tfe---~~G~Y~Y~C~P--H~~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM-----DPEGSG--TLKAGINESFTHTFE---TPGEYTYYCTP--HPGMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC-----Cccccc--ccccCCCcceEEEec---ccceEEEEecc--CCCCC
Confidence 3799999999 7788887777887765542 112221 233455688888887 49999999976 56789
Q ss_pred ceeEEEEec
Q 046746 139 GFGGLCIHS 147 (561)
Q Consensus 139 l~G~liV~~ 147 (561)
|.|.++|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 53
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.41 E-value=0.00058 Score=57.00 Aligned_cols=82 Identities=15% Similarity=0.076 Sum_probs=58.8
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCccee
Q 046746 427 VMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAGMW 506 (561)
Q Consensus 427 ~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG~w 506 (561)
.+.++.|++|+|+ |.+...|-+.++...+..-.. .+ ......+++.+.||....+.|.. ||.|
T Consensus 18 ~i~v~~G~~V~~~--N~~~~~H~~~~~~~~~~~~~~---~~----------~~~~~~~~~~~~pG~t~~~tF~~--~G~y 80 (99)
T TIGR02656 18 KISIAAGDTVEWV--NNKGGPHNVVFDEDAVPAGVK---EL----------AKSLSHKDLLNSPGESYEVTFST--PGTY 80 (99)
T ss_pred EEEECCCCEEEEE--ECCCCCceEEECCCCCccchh---hh----------cccccccccccCCCCEEEEEeCC--CEEE
Confidence 5778999998885 777788888876543221100 00 00123467888999998887776 9999
Q ss_pred eeecccchhhhccceEEEEEe
Q 046746 507 NLRSNIWERNYLGQQLYLSVR 527 (561)
Q Consensus 507 ~~HCHil~H~d~GMm~~~~V~ 527 (561)
.|||- .|...||...+.|.
T Consensus 81 ~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 81 TFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred EEEcC--CccccCCEEEEEEC
Confidence 99998 69999999999873
No 54
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.40 E-value=0.00088 Score=57.30 Aligned_cols=75 Identities=15% Similarity=0.137 Sum_probs=50.5
Q ss_pred CCeEEecCCCEEEEEEEeCCCCCeeeee-CCccCCCCCCCCCCCccCCccCCCCeEEEEEEecCceeeeeEecCchhhhc
Q 046746 58 GPNINSTTNDNLVINVFNKLDEPFLLTW-PGIQHKKNSWQDGVLGTNCPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRA 136 (561)
Q Consensus 58 gP~i~v~~Gd~v~v~v~N~l~~~~~iH~-HG~~~~~~~~~DGv~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~ 136 (561)
...|.|++||+|+....|. ++++.+ .+. .-+|... ..-.+|+++++.|+ ++|+|=|+|- .+..
T Consensus 14 P~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~------~p~g~~~--~~s~~g~~~~~tF~---~~G~Y~Y~C~--pH~~ 77 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK---GHNVETIKGM------IPEGAEA--FKSKINEEYTVTVT---EEGVYGVKCT--PHYG 77 (116)
T ss_pred CCEEEECCCCEEEEEECCC---CeeEEEccCC------CcCCccc--ccCCCCCEEEEEeC---CCEEEEEEcC--CCcc
Confidence 4689999999976665554 455443 221 1122211 11245777777775 5999999998 5678
Q ss_pred cCceeEEEEecC
Q 046746 137 AGGFGGLCIHSR 148 (561)
Q Consensus 137 ~Gl~G~liV~~~ 148 (561)
.||.|.++|.++
T Consensus 78 ~GM~G~V~Vg~~ 89 (116)
T TIGR02375 78 MGMVALIQVGDP 89 (116)
T ss_pred CCCEEEEEECCC
Confidence 899999999885
No 55
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.36 E-value=0.00088 Score=58.33 Aligned_cols=60 Identities=13% Similarity=0.251 Sum_probs=50.3
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCccee
Q 046746 427 VMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAGMW 506 (561)
Q Consensus 427 ~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG~w 506 (561)
.+.++.|+.|+|.+.|.+...|.+-++++.+ ...++||+...++|.++-||.|
T Consensus 62 ~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi---------------------------s~~I~pGet~TitF~adKpG~Y 114 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKSPISEGFSIDAYGI---------------------------SEVIKAGETKTISFKADKAGAF 114 (135)
T ss_pred EEEECCCCEEEEEEEeCCCCccceEECCCCc---------------------------ceEECCCCeEEEEEECCCCEEE
Confidence 4678999999999999998888877766421 3457789999999999999999
Q ss_pred eeecccc
Q 046746 507 NLRSNIW 513 (561)
Q Consensus 507 ~~HCHil 513 (561)
.|||-+-
T Consensus 115 ~y~C~~H 121 (135)
T TIGR03096 115 TIWCQLH 121 (135)
T ss_pred EEeCCCC
Confidence 9999873
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=96.89 E-value=0.0051 Score=52.49 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=50.8
Q ss_pred CCCCeEEecCCCEEEEEEEeCC-CCCeeeeeCCccCCCCCCCC-CCCccCCccCCCCeEEEEEEecCceeeeeEecCchh
Q 046746 56 FPGPNINSTTNDNLVINVFNKL-DEPFLLTWPGIQHKKNSWQD-GVLGTNCPIPPGKNYTYYLQVKDQIGSYIYHPSTGF 133 (561)
Q Consensus 56 ~pgP~i~v~~Gd~v~v~v~N~l-~~~~~iH~HG~~~~~~~~~D-Gv~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~ 133 (561)
|-...|+|++||+|+ ++|+. ..++++..-+ +.. .| + .....+|++|+|.|. ++|+|=|+|-.
T Consensus 39 F~P~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~-f~s~----~~~~~~G~t~s~Tf~---~~G~Y~Y~C~p-- 102 (115)
T TIGR03102 39 FDPPAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGD-LDES----ERVSEEGTTYEHTFE---EPGIYLYVCVP-- 102 (115)
T ss_pred EeCCEEEECCCCEEE--EEECCCCCCEEEEECC----CCC-cccc----ccccCCCCEEEEEec---CCcEEEEEccC--
Confidence 334679999999955 66543 4556654311 001 11 1 123578999999996 59999999985
Q ss_pred hhccCceeEEEEe
Q 046746 134 HRAAGGFGGLCIH 146 (561)
Q Consensus 134 q~~~Gl~G~liV~ 146 (561)
+...||.|.|+|+
T Consensus 103 H~~~gM~G~I~V~ 115 (115)
T TIGR03102 103 HEALGMKGAVVVE 115 (115)
T ss_pred CCCCCCEEEEEEC
Confidence 4567899999985
No 57
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.67 E-value=0.0055 Score=51.57 Aligned_cols=61 Identities=7% Similarity=0.139 Sum_probs=42.8
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCccee
Q 046746 427 VMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAGMW 506 (561)
Q Consensus 427 ~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG~w 506 (561)
.+.++.|+.+.+++.|.+...|-|.+-+. . -...+++|+...+.|.++.||.|
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i~~~--------------------------~-~~~~l~~g~~~~~~f~~~~~G~y 88 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVIPDL--------------------------G-ISKVLPPGETATVTFTPLKPGEY 88 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEEGGG--------------------------T-EEEEE-TT-EEEEEEEE-S-EEE
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEECCC--------------------------c-eEEEECCCCEEEEEEcCCCCEEE
Confidence 57789999999999999877666665541 1 23778899999999999999999
Q ss_pred eeecccch
Q 046746 507 NLRSNIWE 514 (561)
Q Consensus 507 ~~HCHil~ 514 (561)
-|+|-+-.
T Consensus 89 ~~~C~~~~ 96 (104)
T PF13473_consen 89 EFYCTMHP 96 (104)
T ss_dssp EEB-SSS-
T ss_pred EEEcCCCC
Confidence 99999643
No 58
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.11 E-value=0.024 Score=47.19 Aligned_cols=82 Identities=6% Similarity=-0.027 Sum_probs=54.8
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcC-CCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCcc
Q 046746 426 NVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPD-KRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAG 504 (561)
Q Consensus 426 ~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~-~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG 504 (561)
..+.++.|++|.|+.. +...|.+.+=- . .+... +..... ..-.+..+.+|....+.|. .||
T Consensus 17 ~~i~V~~G~tV~~~n~--~~~~Hnv~~~~-------~---~~~~~~~~~~~~----~~~~~~~~~~G~~~~~tF~--~~G 78 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNN--DSMPHNVVFVA-------D---GMPAGADSDYVP----PGDSSPLLAPGETYSVTFT--KPG 78 (99)
T ss_dssp SEEEEETTEEEEEEEE--SSSSBEEEEET-------T---SSHTTGGHCHHS----TTCEEEEBSTTEEEEEEEE--SSE
T ss_pred CEEEECCCCEEEEEEC--CCCCceEEEec-------c---cccccccccccC----ccccceecCCCCEEEEEeC--CCe
Confidence 3578899999888544 56667665422 1 11000 000001 1116777888998888877 899
Q ss_pred eeeeecccchhhhccceEEEEEe
Q 046746 505 MWNLRSNIWERNYLGQQLYLSVR 527 (561)
Q Consensus 505 ~w~~HCHil~H~d~GMm~~~~V~ 527 (561)
.|.|+|- - |...||-..+.|+
T Consensus 79 ~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 79 TYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp EEEEEET-T-TGGTTSEEEEEEE
T ss_pred EEEEEcC-C-CcccCCEEEEEEC
Confidence 9999999 4 9999999999884
No 59
>PRK02710 plastocyanin; Provisional
Probab=95.91 E-value=0.033 Score=48.10 Aligned_cols=72 Identities=13% Similarity=0.060 Sum_probs=51.4
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCccee
Q 046746 427 VMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAGMW 506 (561)
Q Consensus 427 ~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG~w 506 (561)
.+.++.|++|+| .|.+...|.+.+.+... +. .+| ..+.+|+...+.|.. ||.|
T Consensus 48 ~i~v~~Gd~V~~--~N~~~~~H~v~~~~~~~---------~~-------------~~~-~~~~pg~t~~~tF~~--~G~y 100 (119)
T PRK02710 48 TLTIKAGDTVKW--VNNKLAPHNAVFDGAKE---------LS-------------HKD-LAFAPGESWEETFSE--AGTY 100 (119)
T ss_pred EEEEcCCCEEEE--EECCCCCceEEecCCcc---------cc-------------ccc-cccCCCCEEEEEecC--CEEE
Confidence 367889999887 57777888886543211 00 012 346778887777765 9999
Q ss_pred eeecccchhhhccceEEEEEe
Q 046746 507 NLRSNIWERNYLGQQLYLSVR 527 (561)
Q Consensus 507 ~~HCHil~H~d~GMm~~~~V~ 527 (561)
.|+|= .|...||-..+.|+
T Consensus 101 ~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 101 TYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred EEEcC--CCccCCcEEEEEEC
Confidence 99997 69889999999873
No 60
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=95.60 E-value=0.18 Score=52.06 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=53.0
Q ss_pred cCCCCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCcc--CCccCCCCeEEEEEEecCceeeeeEecCch
Q 046746 55 QFPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGT--NCPIPPGKNYTYYLQVKDQIGSYIYHPSTG 132 (561)
Q Consensus 55 ~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~--q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~ 132 (561)
.+--..+.+..|+ +.+.|+|....++..-.- +|+..+ ...|.||.+.++.+++ .+|+|-|+|-.+
T Consensus 40 ~c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~~----------~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C~~~ 106 (375)
T PRK10378 40 QCEPMTLTVNAGK-TQFIIQNHSQKALEWEIL----------KGVMVVEERENIAPGFSQKMTANL--QPGEYDMTCGLL 106 (375)
T ss_pred ccccCceeeCCCC-EEEEEEeCCCCcceEEee----------ccccccccccccCCCCceEEEEec--CCceEEeecCcC
Confidence 4445689999996 899999997655432111 121111 2468999999988776 599999999432
Q ss_pred hhhccCceeEEEEecC
Q 046746 133 FHRAAGGFGGLCIHSR 148 (561)
Q Consensus 133 ~q~~~Gl~G~liV~~~ 148 (561)
..+.|.++|...
T Consensus 107 ----~~~~g~l~Vtg~ 118 (375)
T PRK10378 107 ----TNPKGKLIVKGE 118 (375)
T ss_pred ----CCCCceEEEeCC
Confidence 335889999864
No 61
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.31 E-value=0.067 Score=58.37 Aligned_cols=75 Identities=11% Similarity=0.208 Sum_probs=55.8
Q ss_pred EEecCCCcEEEEEEEcCC---CCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCc
Q 046746 427 VMDATYKAFMEIVLENRQ---NTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNA 503 (561)
Q Consensus 427 ~~~~~~g~~ve~vl~N~~---~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnp 503 (561)
-+.++.|+.|.+.+.|.+ +..|-|-+-++.. -+.+.||....+.|.++.|
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI---------------------------~~dv~PG~t~svtF~adkP 608 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV---------------------------NMEVAPQATASVTFTADKP 608 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCc---------------------------cEEEcCCceEEEEEEcCCC
Confidence 467899999999999964 5567666633322 1345688999999999999
Q ss_pred ceeeeecccchhh-hccceEEEEEec
Q 046746 504 GMWNLRSNIWERN-YLGQQLYLSVRL 528 (561)
Q Consensus 504 G~w~~HCHil~H~-d~GMm~~~~V~~ 528 (561)
|.|.+||...-|. |.+|...+.|++
T Consensus 609 Gvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 609 GVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred EEEEEECCcccccCcccceEEEEEEe
Confidence 9999999875433 347877777753
No 62
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=94.90 E-value=0.14 Score=41.06 Aligned_cols=71 Identities=8% Similarity=-0.032 Sum_probs=46.3
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCccee
Q 046746 427 VMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAGMW 506 (561)
Q Consensus 427 ~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG~w 506 (561)
.+.+..|++|.| .|.+...|-.+++...+ +..+ + ....+.++.... +.++.||.|
T Consensus 12 ~i~v~~GdtVt~--~N~d~~~Hnv~~~~g~~-------~~~~-------------~-~~~~~~~g~~~~--~tf~~~G~y 66 (83)
T TIGR02657 12 ELHVKVGDTVTW--INREAMPHNVHFVAGVL-------GEAA-------------L-KGPMMKKEQAYS--LTFTEAGTY 66 (83)
T ss_pred EEEECCCCEEEE--EECCCCCccEEecCCCC-------cccc-------------c-cccccCCCCEEE--EECCCCEEE
Confidence 477899999888 68777889988754221 0000 0 111234555554 455789999
Q ss_pred eeecccchhhhccceEEEEE
Q 046746 507 NLRSNIWERNYLGQQLYLSV 526 (561)
Q Consensus 507 ~~HCHil~H~d~GMm~~~~V 526 (561)
.|||=+ |. .|-..+.|
T Consensus 67 ~y~C~~--Hp--~M~G~v~V 82 (83)
T TIGR02657 67 DYHCTP--HP--FMRGKVVV 82 (83)
T ss_pred EEEcCC--CC--CCeEEEEE
Confidence 999997 55 58877776
No 63
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=94.23 E-value=0.27 Score=42.08 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=31.5
Q ss_pred CCcEEEEEEEeCCcceeeeecccchhhhccceEEEEEecCCccc
Q 046746 490 PNCWAAILVSMDNAGMWNLRSNIWERNYLGQQLYLSVRLHKRSL 533 (561)
Q Consensus 490 ~~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~ 533 (561)
++.... +.++.||.+-|+|= .|...||-..+.|.++...+
T Consensus 54 ~g~~~~--~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~~~n~ 93 (116)
T TIGR02375 54 INEEYT--VTVTEEGVYGVKCT--PHYGMGMVALIQVGDPPANL 93 (116)
T ss_pred CCCEEE--EEeCCCEEEEEEcC--CCccCCCEEEEEECCCCcCH
Confidence 455544 44578999999999 69999999999998864433
No 64
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.18 E-value=0.46 Score=42.19 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=64.3
Q ss_pred cCCCCeEEecCCCEEEEEEEeCCC--CCeeee---------eCCccCCCCCCCCCCCccCCccCCCCeEEEEEEecCcee
Q 046746 55 QFPGPNINSTTNDNLVINVFNKLD--EPFLLT---------WPGIQHKKNSWQDGVLGTNCPIPPGKNYTYYLQVKDQIG 123 (561)
Q Consensus 55 ~~pgP~i~v~~Gd~v~v~v~N~l~--~~~~iH---------~HG~~~~~~~~~DGv~~~q~~i~PG~~~~Y~f~~~~~~G 123 (561)
.|++-.+.++.|++++..+.|.-. ...++- .|.... ..+++--.-...+.||++-+..|.. .++|
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~---~Dme~d~~~~v~L~PG~s~elvv~f-t~~g 134 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILA---DDMEHDDPNTVTLAPGKSGELVVVF-TGAG 134 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhC---CccccCCcceeEeCCCCcEEEEEEe-cCCc
Confidence 357778999999999999999742 222221 122211 2333322114569999999999996 5699
Q ss_pred eeeEecCchhhhccCceeEEEEec
Q 046746 124 SYIYHPSTGFHRAAGGFGGLCIHS 147 (561)
Q Consensus 124 t~wYH~H~~~q~~~Gl~G~liV~~ 147 (561)
.|=+-|-...++..||.|-|.|.+
T Consensus 135 ~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 135 KYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred cEEEEecCCCcccCCcEEEEEeCC
Confidence 999999999999999999998864
No 65
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=93.98 E-value=0.17 Score=44.82 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=66.0
Q ss_pred EecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcC-CCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCccee
Q 046746 428 MDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPD-KRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAGMW 506 (561)
Q Consensus 428 ~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~-~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG~w 506 (561)
+.++.|++++.++.|.....|=|=+= ++....+ .+.-. ....... --..++.|.||....|-+.+.++|.+
T Consensus 65 ~~v~aG~tv~~v~~n~~el~hef~~~---~~~~~~~--~~~~~~~~~Dme~---d~~~~v~L~PG~s~elvv~ft~~g~y 136 (158)
T COG4454 65 FEVKAGETVRFVLKNEGELKHEFTMD---APDKNLE--HVTHMILADDMEH---DDPNTVTLAPGKSGELVVVFTGAGKY 136 (158)
T ss_pred ccccCCcEEeeeecCcccceEEEecc---Cccccch--hHHHhhhCCcccc---CCcceeEeCCCCcEEEEEEecCCccE
Confidence 45788999999999998777766553 2221111 01000 0000001 12479999999999999999999999
Q ss_pred eeecccchhhhccceEEEEEe
Q 046746 507 NLRSNIWERNYLGQQLYLSVR 527 (561)
Q Consensus 507 ~~HCHil~H~d~GMm~~~~V~ 527 (561)
-|-|-|-.|-+.||-..++|.
T Consensus 137 e~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 137 EFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred EEEecCCCcccCCcEEEEEeC
Confidence 999999999999999999884
No 66
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.57 E-value=0.38 Score=41.55 Aligned_cols=74 Identities=11% Similarity=0.077 Sum_probs=49.2
Q ss_pred CCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCccCCccCCCCeEEEEEEecCceeeeeEecCch-hhhc
Q 046746 58 GPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTNCPIPPGKNYTYYLQVKDQIGSYIYHPSTG-FHRA 136 (561)
Q Consensus 58 gP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~-~q~~ 136 (561)
.+.|.+..|+.|++++++. +.-+++...++. ++.-+-||+.....|+. +++|+|++.|..- ....
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~------------~k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~gH 110 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVIHSFWIPELG------------IKMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAGH 110 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS-EEEEETTCT------------EEEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTTG
T ss_pred cceecccccceEeEEEEcC-CccccccccccC------------cccccccccceeeeeee-ccCCcEEEcCccccCcCc
Confidence 5789999999999999995 222233322221 13446799999999995 7899999999743 2223
Q ss_pred cCceeEEEE
Q 046746 137 AGGFGGLCI 145 (561)
Q Consensus 137 ~Gl~G~liV 145 (561)
.-|.|-++|
T Consensus 111 ~~M~~~v~V 119 (120)
T PF00116_consen 111 SFMPGKVIV 119 (120)
T ss_dssp GG-EEEEEE
T ss_pred CCCeEEEEE
Confidence 336666654
No 67
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=92.95 E-value=2 Score=37.09 Aligned_cols=62 Identities=19% Similarity=0.311 Sum_probs=48.3
Q ss_pred ceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEeecCcccceeeeeeEEEcccceEEEEEEeCCCCCceEEEEEeec
Q 046746 215 PLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTANQDPKDYYLIASTRF 294 (561)
Q Consensus 215 p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~ 294 (561)
..+.++.|+.++|++-+. .-.|.|.|.+..++ +.+-||+.-.+-++++ ++|.|+++++...
T Consensus 46 ~~l~lp~g~~v~~~ltS~--DViHsf~ip~~~~k----------------~d~~PG~~~~~~~~~~-~~G~y~~~C~e~C 106 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSE--DVIHSFWIPELGIK----------------MDAIPGRTNSVTFTPD-KPGTYYGQCAEYC 106 (120)
T ss_dssp SEEEEETTSEEEEEEEES--SS-EEEEETTCTEE----------------EEEBTTCEEEEEEEES-SSEEEEEEE-SSS
T ss_pred ceecccccceEeEEEEcC--CccccccccccCcc----------------cccccccceeeeeeec-cCCcEEEcCcccc
Confidence 689999999999999984 44667788766544 3667899889999998 8999999998654
Q ss_pred c
Q 046746 295 T 295 (561)
Q Consensus 295 ~ 295 (561)
.
T Consensus 107 G 107 (120)
T PF00116_consen 107 G 107 (120)
T ss_dssp S
T ss_pred C
Confidence 3
No 68
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=91.23 E-value=1.2 Score=37.96 Aligned_cols=73 Identities=7% Similarity=-0.035 Sum_probs=46.7
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCccee
Q 046746 427 VMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAGMW 506 (561)
Q Consensus 427 ~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG~w 506 (561)
.+.++.|++|.|+.+ .+...|-.. +.+.+.|+. ......+|+...+.| +.||.+
T Consensus 43 ~ltV~~GdTVtw~~~-~d~~~HnV~---------s~~~~~f~s--------------~~~~~~~G~t~s~Tf--~~~G~Y 96 (115)
T TIGR03102 43 AIRVDPGTTVVWEWT-GEGGGHNVV---------SDGDGDLDE--------------SERVSEEGTTYEHTF--EEPGIY 96 (115)
T ss_pred EEEECCCCEEEEEEC-CCCCCEEEE---------ECCCCCccc--------------cccccCCCCEEEEEe--cCCcEE
Confidence 467899999998433 234455442 222222321 111234566666666 689999
Q ss_pred eeecccchhhhccceEEEEEe
Q 046746 507 NLRSNIWERNYLGQQLYLSVR 527 (561)
Q Consensus 507 ~~HCHil~H~d~GMm~~~~V~ 527 (561)
.|+|= .|...||-..+.|+
T Consensus 97 ~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 97 LYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred EEEcc--CCCCCCCEEEEEEC
Confidence 99999 49999999999883
No 69
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=90.65 E-value=0.91 Score=43.05 Aligned_cols=78 Identities=9% Similarity=0.047 Sum_probs=56.1
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCcce
Q 046746 426 NVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAGM 505 (561)
Q Consensus 426 ~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG~ 505 (561)
+.+.++.|+.|++.+.+.+- .|.|. |-+-+ ...| +-||....+.|.++.||.
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV-~Hsf~-------ip~~~-----------------~k~d---a~PG~~~~~~~~~~~~G~ 168 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDV-IHSFW-------VPELG-----------------GKID---AIPGQYNALWFNADEPGV 168 (201)
T ss_pred CEEEEEcCCEEEEEEEeCch-hhccc-------ccccC-----------------ceEE---ecCCcEEEEEEEeCCCEE
Confidence 45778999999999998653 35444 42211 1233 457889999999999999
Q ss_pred eeeecccchh-hhccceEEEEEecCCc
Q 046746 506 WNLRSNIWER-NYLGQQLYLSVRLHKR 531 (561)
Q Consensus 506 w~~HCHil~H-~d~GMm~~~~V~~~~~ 531 (561)
+...|--.-. .|..|...+.|.++++
T Consensus 169 y~~~c~e~cG~~h~~M~~~v~v~~~~~ 195 (201)
T TIGR02866 169 YYGYCAELCGAGHSLMLFKVVVVEREE 195 (201)
T ss_pred EEEEehhhCCcCccCCeEEEEEECHHH
Confidence 9999997432 3578888888887653
No 70
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=90.55 E-value=1.2 Score=38.68 Aligned_cols=74 Identities=11% Similarity=-0.059 Sum_probs=49.7
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCccee
Q 046746 427 VMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAGMW 506 (561)
Q Consensus 427 ~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG~w 506 (561)
.++++.|++|+| .|.+...|-.+.=+-. +|..-+++..-.+.....-|.. ||.+
T Consensus 55 ~v~v~pGDTVtw--~~~d~~~Hnv~~~~~~----------------------~~~g~~~~~~~~~~s~~~Tfe~--~G~Y 108 (128)
T COG3794 55 EVTVKPGDTVTW--VNTDSVGHNVTAVGGM----------------------DPEGSGTLKAGINESFTHTFET--PGEY 108 (128)
T ss_pred EEEECCCCEEEE--EECCCCCceEEEeCCC----------------------CcccccccccCCCcceEEEecc--cceE
Confidence 467899999999 7777667766542221 0111233333344565555555 9999
Q ss_pred eeecccchhhhccceEEEEEec
Q 046746 507 NLRSNIWERNYLGQQLYLSVRL 528 (561)
Q Consensus 507 ~~HCHil~H~d~GMm~~~~V~~ 528 (561)
.|.|-. |..+||-..+.|++
T Consensus 109 ~Y~C~P--H~~~gM~G~IvV~~ 128 (128)
T COG3794 109 TYYCTP--HPGMGMKGKIVVGE 128 (128)
T ss_pred EEEecc--CCCCCcEEEEEeCC
Confidence 999987 89999999998853
No 71
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=89.37 E-value=2 Score=36.96 Aligned_cols=88 Identities=17% Similarity=0.086 Sum_probs=55.2
Q ss_pred CCCCeEEecC-CCEEEEEEEeCCCCCeeeeeCCccCCCCC--------------CCCCCCc----c---CCccCCCCeEE
Q 046746 56 FPGPNINSTT-NDNLVINVFNKLDEPFLLTWPGIQHKKNS--------------WQDGVLG----T---NCPIPPGKNYT 113 (561)
Q Consensus 56 ~pgP~i~v~~-Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~--------------~~DGv~~----~---q~~i~PG~~~~ 113 (561)
|--..|.|.. |..|.|+|+|.-..+-..--|.+-...+. ..|=+|- + ..-|.|||+.+
T Consensus 13 Fd~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~s 92 (125)
T TIGR02695 13 FNTKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTS 92 (125)
T ss_pred ccccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEE
Confidence 3346799998 48999999998533322222221111001 1111221 1 34589999999
Q ss_pred EEEEecC-ceee-eeEecCchhhhccCceeEEE
Q 046746 114 YYLQVKD-QIGS-YIYHPSTGFHRAAGGFGGLC 144 (561)
Q Consensus 114 Y~f~~~~-~~Gt-~wYH~H~~~q~~~Gl~G~li 144 (561)
..|+++. ++|+ |-|-|-...+.. .|.|.|.
T Consensus 93 vtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 93 VTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 9999753 5786 999999877765 4888875
No 72
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=87.45 E-value=4.4 Score=37.76 Aligned_cols=95 Identities=16% Similarity=-0.016 Sum_probs=59.6
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCC----CCC--CCCCCCCceeEEEeCCCcEEEEEEEe
Q 046746 427 VMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDK----RKS--YNLIDAVSRYTIQVFPNCWAAILVSM 500 (561)
Q Consensus 427 ~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~----~~~--~n~~~P~~rDTv~vp~~g~~~irf~a 500 (561)
.+.+|.|-.|.+++.|.+...|- |-|+..+........ .+. +--..+.--..--+++|.....-+..
T Consensus 87 ~i~VPAGw~V~i~f~N~~~l~Hn-------l~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~ 159 (196)
T PF06525_consen 87 TIYVPAGWNVQITFTNQESLPHN-------LVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYND 159 (196)
T ss_pred EEEEcCCCEEEEEEEcCCCCCee-------EEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEcc
Confidence 46689999999999998877664 555544322111100 000 00000100011233456666666666
Q ss_pred CCcceeeeecccchhhhccceEEEEEec
Q 046746 501 DNAGMWNLRSNIWERNYLGQQLYLSVRL 528 (561)
Q Consensus 501 dnpG~w~~HCHil~H~d~GMm~~~~V~~ 528 (561)
-.||.+.|=|-+.-|...||-..+.|.+
T Consensus 160 l~aG~YwlvC~ipGHA~sGMw~~LiVs~ 187 (196)
T PF06525_consen 160 LPAGYYWLVCGIPGHAESGMWGVLIVSS 187 (196)
T ss_pred CCCceEEEEccCCChhhcCCEEEEEEec
Confidence 6799999999999999999999999854
No 73
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=84.76 E-value=10 Score=30.18 Aligned_cols=65 Identities=18% Similarity=0.301 Sum_probs=35.7
Q ss_pred EEEEEEEcCCCceEEEEEe-Cccc--EEEeecCcccc--------eeeeeeEEEcccceEEEEEEeCCC---CCceEEEE
Q 046746 225 YKYRICNVGVKTSLNFRIQ-GHTM--KLVEMEGSHVV--------QNEYESLDVHVGQCFTVLVTANQD---PKDYYLIA 290 (561)
Q Consensus 225 ~rlRliN~~~~~~~~~~i~-gh~~--~via~DG~~~~--------p~~~~~v~l~pgeR~dv~v~~~~~---~g~y~i~~ 290 (561)
..|.+.|.+. ..+.|.+. |+.+ .|...+|..+- -+......|.|||...+-.+.+.. +|.|.+.+
T Consensus 4 ~~l~v~N~s~-~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 4 FTLTVTNNSD-EPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEEEE-SS-S-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEEEeCCC-CeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 4677778777 33466664 5543 34444666552 134567899999999999888763 79998764
No 74
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=81.81 E-value=4.1 Score=39.82 Aligned_cols=82 Identities=10% Similarity=0.094 Sum_probs=57.1
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCcc
Q 046746 425 PNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAG 504 (561)
Q Consensus 425 ~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG 504 (561)
.+.+.++.|+.|++.+... +..|- |+|-+- +--+.+.||-...+.+.++.||
T Consensus 136 ~n~l~lPv~~~V~f~ltS~-DViHs-------F~IP~l--------------------~~k~d~iPG~~~~~~~~~~~~G 187 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA-DVIHS-------FWIPQL--------------------GGKIDAIPGMTTELWLTANKPG 187 (247)
T ss_pred cceEEEeCCCeEEEEEEec-hhcee-------EEecCC--------------------CceeeecCCceEEEEEecCCCe
Confidence 3457789999999988876 34454 444222 2333445678888999999999
Q ss_pred eeeeecccchhh-hccceEEEEEecCCccccc
Q 046746 505 MWNLRSNIWERN-YLGQQLYLSVRLHKRSLRD 535 (561)
Q Consensus 505 ~w~~HCHil~H~-d~GMm~~~~V~~~~~~~~~ 535 (561)
.+-.+|+..-=. |..|-..+.|+.+++ +++
T Consensus 188 ~Y~g~Cae~CG~gH~~M~~~v~vvs~~~-f~~ 218 (247)
T COG1622 188 TYRGICAEYCGPGHSFMRFKVIVVSQED-FDA 218 (247)
T ss_pred EEEEEcHhhcCCCcccceEEEEEEcHHH-HHH
Confidence 999999988543 445666777777655 644
No 75
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=80.73 E-value=2.2 Score=44.44 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=50.0
Q ss_pred eEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCccCCccCCCCeEEEEEEecCceeeeeEecCch-hhhccC
Q 046746 60 NINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTNCPIPPGKNYTYYLQVKDQIGSYIYHPSTG-FHRAAG 138 (561)
Q Consensus 60 ~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~-~q~~~G 138 (561)
+..|++||.|.+.++|-......+| |.-.. .-|+ ...+.|-++-.|.|. .+.+|.+||.|--. .-...-
T Consensus 559 ef~Vkq~DEVt~l~tnld~Ved~th--gfv~p----~~~v---~~~v~pq~tasvtf~-a~kpgv~w~ycs~fchalh~e 628 (637)
T COG4263 559 EFKVKQGDEVTVLTTNLDEVEDLTH--GFVIP----NYGV---NMEVKPQRTASVTFY-ADKPGVAWYYCSWFCHALHME 628 (637)
T ss_pred EEEEecCcEEEEEecccceeccccc--eeeec----cCce---EEEEccCCceEEEEE-ccCCeeeehhhhhHHHHHHHh
Confidence 5678888888888877654333333 32111 1111 245788999999998 47899999987533 233344
Q ss_pred ceeEEEEec
Q 046746 139 GFGGLCIHS 147 (561)
Q Consensus 139 l~G~liV~~ 147 (561)
|+|-++|+.
T Consensus 629 m~~rmlve~ 637 (637)
T COG4263 629 MAGRMLVEA 637 (637)
T ss_pred hccceeecC
Confidence 778888763
No 76
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=80.33 E-value=13 Score=34.12 Aligned_cols=96 Identities=13% Similarity=-0.059 Sum_probs=58.6
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCC-CcC---CCCCCCC--CCCCceeEEEeCCCcEEEEEEE
Q 046746 426 NVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTW-NPD---KRKSYNL--IDAVSRYTIQVFPNCWAAILVS 499 (561)
Q Consensus 426 ~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~-~~~---~~~~~n~--~~P~~rDTv~vp~~g~~~irf~ 499 (561)
..+.++.|-.|.+++.|.+...|-+ -|+..+.... .+. +.+..+. ..|.--..=-+.+|......|.
T Consensus 85 mtIyiPaGw~V~V~f~N~e~~pHnl-------~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~ 157 (195)
T TIGR03094 85 MTIYLPAGWNVYVTFTNYESLPHNL-------KLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWN 157 (195)
T ss_pred eEEEEeCCCEEEEEEEcCCCCCccE-------EEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEec
Confidence 3466899999999999998777654 4444432111 000 0000000 0011001112334556566666
Q ss_pred eCCcceeeeecccchhhhccceEEEEEec
Q 046746 500 MDNAGMWNLRSNIWERNYLGQQLYLSVRL 528 (561)
Q Consensus 500 adnpG~w~~HCHil~H~d~GMm~~~~V~~ 528 (561)
+-.||.+.+=|-+.-|...||-..+.|-.
T Consensus 158 ~~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 158 DTSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred cCCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 67899999999999999999999988753
No 77
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=79.61 E-value=5.5 Score=37.73 Aligned_cols=77 Identities=12% Similarity=0.063 Sum_probs=55.2
Q ss_pred CCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCccCCccCCCCeEEEEEEecCceeeeeEecCch-hhhc
Q 046746 58 GPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTNCPIPPGKNYTYYLQVKDQIGSYIYHPSTG-FHRA 136 (561)
Q Consensus 58 gP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~-~q~~ 136 (561)
...|.+..|+.|++++++.. .+ ||..... . +++.-+-||..-+..|+ ++++|+|...|..- ....
T Consensus 116 ~~~l~vp~g~~v~~~~ts~D----V~--Hsf~ip~---~----~~k~da~PG~~~~~~~~-~~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSKD----VI--HSFWVPE---L----GGKIDAIPGQYNALWFN-ADEPGVYYGYCAELCGAGH 181 (201)
T ss_pred cCEEEEEcCCEEEEEEEeCc----hh--hcccccc---c----CceEEecCCcEEEEEEE-eCCCEEEEEEehhhCCcCc
Confidence 35899999999999999862 33 5554321 1 11345678999888998 58899999998742 2233
Q ss_pred cCceeEEEEecC
Q 046746 137 AGGFGGLCIHSR 148 (561)
Q Consensus 137 ~Gl~G~liV~~~ 148 (561)
..|.+-++|.++
T Consensus 182 ~~M~~~v~v~~~ 193 (201)
T TIGR02866 182 SLMLFKVVVVER 193 (201)
T ss_pred cCCeEEEEEECH
Confidence 558899998874
No 78
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=76.83 E-value=14 Score=36.19 Aligned_cols=78 Identities=10% Similarity=-0.016 Sum_probs=57.0
Q ss_pred CCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCccCCccCCCCeEEEEEEecCceeeeeEecCch-hhhc
Q 046746 58 GPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTNCPIPPGKNYTYYLQVKDQIGSYIYHPSTG-FHRA 136 (561)
Q Consensus 58 gP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~-~q~~ 136 (561)
...|.+..|.+|+++++=. +.-+++...++. .+.-.-||...+..++ ++++|+|.-+|+.- ....
T Consensus 136 ~n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~------------~k~d~iPG~~~~~~~~-~~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA-DVIHSFWIPQLG------------GKIDAIPGMTTELWLT-ANKPGTYRGICAEYCGPGH 201 (247)
T ss_pred cceEEEeCCCeEEEEEEec-hhceeEEecCCC------------ceeeecCCceEEEEEe-cCCCeEEEEEcHhhcCCCc
Confidence 3889999999999998866 222233333321 1344678988898888 58899999999853 5666
Q ss_pred cCceeEEEEecCC
Q 046746 137 AGGFGGLCIHSRS 149 (561)
Q Consensus 137 ~Gl~G~liV~~~~ 149 (561)
..|.|.++|.+++
T Consensus 202 ~~M~~~v~vvs~~ 214 (247)
T COG1622 202 SFMRFKVIVVSQE 214 (247)
T ss_pred ccceEEEEEEcHH
Confidence 6799999999854
No 79
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=71.42 E-value=15 Score=35.49 Aligned_cols=78 Identities=8% Similarity=0.086 Sum_probs=55.0
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCcc
Q 046746 425 PNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAG 504 (561)
Q Consensus 425 ~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG 504 (561)
.+.+.+|.|..|++.+.+.| ..|. |+|-+-+ .. +..-||....+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D-ViHs-------f~ip~~~-----------------~k---~d~~Pg~~~~~~~~~~~~g 190 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD-VIHS-------WTVPSLG-----------------VK---VDAIPGRLNQLSFEPKRPG 190 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc-cccc-------eeccccC-----------------ce---eECCCCcceeEEEEeCCCE
Confidence 45577999999999999864 3344 4442221 11 2334688888999999999
Q ss_pred eeeeecccchhh-hccceEEEEEecCC
Q 046746 505 MWNLRSNIWERN-YLGQQLYLSVRLHK 530 (561)
Q Consensus 505 ~w~~HCHil~H~-d~GMm~~~~V~~~~ 530 (561)
.+...|.-+-.. |..|-..++|..++
T Consensus 191 ~y~~~C~e~CG~~H~~M~~~v~v~~~~ 217 (228)
T MTH00140 191 VFYGQCSEICGANHSFMPIVVEAVPLE 217 (228)
T ss_pred EEEEECccccCcCcCCCeEEEEEECHH
Confidence 999999977544 56677777777654
No 80
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=71.19 E-value=41 Score=34.42 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=14.9
Q ss_pred CCccCCCCeEEEEEEec
Q 046746 103 NCPIPPGKNYTYYLQVK 119 (561)
Q Consensus 103 q~~i~PG~~~~Y~f~~~ 119 (561)
+.||.|||+.+.+.++.
T Consensus 337 ~~pI~PGETr~v~v~aq 353 (399)
T TIGR03079 337 QSAIAPGETVEVKMEAK 353 (399)
T ss_pred CCCcCCCcceEEEEEEe
Confidence 67899999999999863
No 81
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=69.21 E-value=5.4 Score=33.72 Aligned_cols=55 Identities=20% Similarity=0.356 Sum_probs=33.6
Q ss_pred EEEEEeCCCCC---eeeeeCCccCCC---CCCCCCCCccCCccCCCCeEEEEEEe--cCceee
Q 046746 70 VINVFNKLDEP---FLLTWPGIQHKK---NSWQDGVLGTNCPIPPGKNYTYYLQV--KDQIGS 124 (561)
Q Consensus 70 ~v~v~N~l~~~---~~iH~HG~~~~~---~~~~DGv~~~q~~i~PG~~~~Y~f~~--~~~~Gt 124 (561)
.|++.|.-..+ .+=|||=-+..+ .-.-+||-|-|.-|.||++|+|.=-. ..+.|+
T Consensus 33 titI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y~YtSg~~l~Tp~G~ 95 (126)
T COG2967 33 TVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYTSGCPLDTPSGT 95 (126)
T ss_pred EEEEecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCceEEcCCcCccCCcce
Confidence 36777776544 466888332111 12345665558899999999997433 234555
No 82
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=64.70 E-value=26 Score=31.69 Aligned_cols=78 Identities=8% Similarity=0.079 Sum_probs=52.1
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCcc
Q 046746 425 PNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAG 504 (561)
Q Consensus 425 ~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG 504 (561)
.+.+.++.|..+++.+...+- .|.|.+-..- ...|.+ ||....+.|.++.||
T Consensus 72 Dn~LvLP~g~~Vr~~lTS~DV-IHSF~VP~lg------------------------vK~Dav---PGr~n~l~~~~~~~G 123 (162)
T PTZ00047 72 DKRLTLPTRTHIRFLITATDV-IHSWSVPSLG------------------------IKADAI---PGRLHKINTFILREG 123 (162)
T ss_pred cCCEEEeCCCEEEEEEEeCcc-ceeeeccccC------------------------ceeecc---CCceEEEEEecCCCe
Confidence 344668999999998887643 3665543221 123433 677778899999999
Q ss_pred eeeeecccchh-hhccceEEEEEecCC
Q 046746 505 MWNLRSNIWER-NYLGQQLYLSVRLHK 530 (561)
Q Consensus 505 ~w~~HCHil~H-~d~GMm~~~~V~~~~ 530 (561)
.+...|.-+-= -|..|-..+.|..++
T Consensus 124 ~y~gqCsElCG~gHs~M~~~V~vvs~~ 150 (162)
T PTZ00047 124 VFYGQCSEMCGTLHGFMPIVVEAVSPE 150 (162)
T ss_pred EEEEEcchhcCcCccCceEEEEEeCHH
Confidence 99999997632 234566677776654
No 83
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=64.50 E-value=31 Score=27.48 Aligned_cols=57 Identities=23% Similarity=0.398 Sum_probs=30.0
Q ss_pred eEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCCcc----CCccCCCCeEEEEEEecCc---eeeeeE
Q 046746 60 NINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGT----NCPIPPGKNYTYYLQVKDQ---IGSYIY 127 (561)
Q Consensus 60 ~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~----q~~i~PG~~~~Y~f~~~~~---~Gt~wY 127 (561)
+|+..-|++..+.|.|.-.+ ..| -|++|...+ +..|.||++.+|++..+.. +|+|..
T Consensus 17 ~l~f~sgq~~D~~v~d~~g~---~vw--------rwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKEGK---EVW--------RWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEESSS--EEEEEE-TT-----EEE--------ETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEeCCCCEEEEEEECCCCC---EEE--------EecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 55566666666666644221 111 367777665 4569999999999998644 688853
No 84
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=62.84 E-value=21 Score=34.48 Aligned_cols=77 Identities=8% Similarity=0.145 Sum_probs=54.7
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCccee
Q 046746 427 VMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAGMW 506 (561)
Q Consensus 427 ~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG~w 506 (561)
-+.+|.|+.|++.+...|-. | .|+|-+-+ .++|.+ ||....+.|.+|.||.|
T Consensus 140 el~lP~g~pV~~~ltS~DVi-H-------SF~VP~l~-----------------~K~Dai---PG~~n~~~~~~~~~G~y 191 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNSVM-N-------SFFIPQLG-----------------SQIYAM---AGMQTKLHLIANEPGVY 191 (226)
T ss_pred eEEEECCCEEEEEEEECchh-h-------hhhhhhcC-----------------CeeecC---CCceEEEEEEeCCCEEE
Confidence 35789999999988877532 4 45553322 234655 68888999999999999
Q ss_pred eeecccchhh-hccceEEEEEecCCc
Q 046746 507 NLRSNIWERN-YLGQQLYLSVRLHKR 531 (561)
Q Consensus 507 ~~HCHil~H~-d~GMm~~~~V~~~~~ 531 (561)
.-.|--.-=. |..|...+.|.++++
T Consensus 192 ~g~CaE~CG~~Ha~M~~~V~v~~~~~ 217 (226)
T TIGR01433 192 DGISANYSGPGFSGMKFKAIATDRAA 217 (226)
T ss_pred EEEchhhcCcCccCCeEEEEEECHHH
Confidence 9999855322 567888888776543
No 85
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=62.57 E-value=44 Score=31.44 Aligned_cols=77 Identities=9% Similarity=0.078 Sum_probs=54.2
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCcce
Q 046746 426 NVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAGM 505 (561)
Q Consensus 426 ~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG~ 505 (561)
+.+.++.|+.+++.+...| ..|.|.+-... ...|.+ ||....+.|.++.||.
T Consensus 116 ~~l~lp~g~~v~~~ltS~D-ViHsf~vp~l~------------------------~k~d~~---PG~~~~~~~~~~~~G~ 167 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSD-VIHSFSVPDLN------------------------LKMDAI---PGRINHLFFCPDRHGV 167 (194)
T ss_pred ceEEEeCCCEEEeeeecCc-cccceeccccC------------------------ceeecC---CCceEEEEEEcCCCEE
Confidence 3467899999999888764 44555443221 123443 6888899999999999
Q ss_pred eeeecccchhh-hccceEEEEEecCC
Q 046746 506 WNLRSNIWERN-YLGQQLYLSVRLHK 530 (561)
Q Consensus 506 w~~HCHil~H~-d~GMm~~~~V~~~~ 530 (561)
+-.-|.-+-=. |..|-..++|.+++
T Consensus 168 y~g~C~e~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 168 FVGYCSELCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEEeehhhCcCcccCcEEEEEEcCC
Confidence 99999976433 56677788887654
No 86
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=62.47 E-value=54 Score=28.31 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=51.4
Q ss_pred CceEEEEc-CCEEEEEEEEcCCCc----eEEEEEe-CcccEEEee-------cCccccee----eeeeEEEcccceEEEE
Q 046746 214 EPLFTMKA-GKVYKYRICNVGVKT----SLNFRIQ-GHTMKLVEM-------EGSHVVQN----EYESLDVHVGQCFTVL 276 (561)
Q Consensus 214 ~p~~~v~~-G~~~rlRliN~~~~~----~~~~~i~-gh~~~via~-------DG~~~~p~----~~~~v~l~pgeR~dv~ 276 (561)
...|+|++ ++.+.+.|-|.|... .|++-|- .-.+.-|+. |-+|+++- ...+=.|.+||..+|-
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 47899998 488999999998643 3444442 223333333 44455432 2345578999999999
Q ss_pred EEeCC-CCC-ceEEEEE
Q 046746 277 VTANQ-DPK-DYYLIAS 291 (561)
Q Consensus 277 v~~~~-~~g-~y~i~~~ 291 (561)
++++. .+| +|...++
T Consensus 95 F~~~~l~~g~~Y~f~CS 111 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCS 111 (125)
T ss_pred EECCCCCCCCcceEEEc
Confidence 99864 355 6988776
No 87
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=59.40 E-value=1.1e+02 Score=25.92 Aligned_cols=21 Identities=10% Similarity=0.327 Sum_probs=13.2
Q ss_pred EEEEEEcCCC-ceEEEEEeCcc
Q 046746 226 KYRICNVGVK-TSLNFRIQGHT 246 (561)
Q Consensus 226 rlRliN~~~~-~~~~~~i~gh~ 246 (561)
++|++|+++. ..+.+.++|..
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~ 24 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTK 24 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEE
Confidence 5778887775 35566665443
No 88
>PF14481 Fimbrial_PilY2: Type 4 fimbrial biogenesis protein PilY2; PDB: 3TDQ_A.
Probab=58.62 E-value=5.8 Score=32.69 Aligned_cols=71 Identities=23% Similarity=0.071 Sum_probs=20.0
Q ss_pred CchhHHHHHHHHHHHHHhhc-ccccCCCeEEEEEEEEEEE-----ecCCCeeeeEEEECCcCCCCeE-EecCCCEEEE
Q 046746 1 MVATRLMMLLICFLAAATSG-LVEAGSPTFFFTWNVTYGT-----ISPLGIPQQGILINGQFPGPNI-NSTTNDNLVI 71 (561)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~l~~~~~~-----~~~dG~~~~~~~~Ng~~pgP~i-~v~~Gd~v~v 71 (561)
|+.++++.+.+++.+++... +.++...|.+-.=.+.+.. +.+||+.+.+=.-=-+--||.| .+++|..|-.
T Consensus 1 Mk~L~~La~~L~alaLa~p~~~~a~~~~TFE~~GvV~~v~~e~~lv~IDgq~YrLPn~v~q~~~p~ifqvrpGsvVS~ 78 (118)
T PF14481_consen 1 MKSLRLLATALFALALACPGLAWAAEPHTFEGAGVVQEVQPEKNLVDIDGQHYRLPNRVAQQGGPVIFQVRPGSVVSF 78 (118)
T ss_dssp --------------------------TTEEEEEEEEEEEEGGGTEEEETTEEEE--TT-EETTEEGGGT--TT-EEEE
T ss_pred CcchHHhhhhhhhhhhccccceeccCcceecccceEEEeecccceEEEcCcEEeCCchhhhcCCceEEEEcCCcEEEE
Confidence 77777765322222221111 1233344444333333332 3456655443100001247988 8999998654
No 89
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=57.61 E-value=48 Score=25.12 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=35.7
Q ss_pred ceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEeecCcccceeeeeeEEEcccceEEEEEEeCCCCCceEEEEE
Q 046746 215 PLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTANQDPKDYYLIAS 291 (561)
Q Consensus 215 p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~ 291 (561)
..|+++.|+++++.+-+.+.. ..+.+...+|..+....-.. -..+..-.+.+.+. .+|+|+|+..
T Consensus 5 y~f~v~ag~~l~i~l~~~~~d---------~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSGD---------ADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAGTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTSS---------EEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSEEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCCC---------eEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCEEEEEEEE
Confidence 568899999998888776651 22455555554332211111 01122222334444 7899998874
No 90
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=56.59 E-value=60 Score=33.37 Aligned_cols=69 Identities=20% Similarity=0.344 Sum_probs=31.8
Q ss_pred eeeEEEECCcCCCCeEEecCCCEEEEEEEeCCCCCe--------eeeeCCccCCCC--CC------CCCCCcc-CCccCC
Q 046746 46 PQQGILINGQFPGPNINSTTNDNLVINVFNKLDEPF--------LLTWPGIQHKKN--SW------QDGVLGT-NCPIPP 108 (561)
Q Consensus 46 ~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~--------~iH~HG~~~~~~--~~------~DGv~~~-q~~i~P 108 (561)
+..+..-+=+.||-+|++ .++|+|+-+.+. +++|-.-..... .+ .+|.-.. ..||+|
T Consensus 250 ~~~v~~A~Y~vpgR~l~~------~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~P 323 (381)
T PF04744_consen 250 KVKVTDATYRVPGRTLTM------TLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIAP 323 (381)
T ss_dssp EEEEEEEEEESSSSEEEE------EEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-T
T ss_pred EEEEeccEEecCCcEEEE------EEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcCC
Confidence 333444444667777743 477788776543 334333222111 00 1121112 568999
Q ss_pred CCeEEEEEEecC
Q 046746 109 GKNYTYYLQVKD 120 (561)
Q Consensus 109 G~~~~Y~f~~~~ 120 (561)
||+.+.+.++.+
T Consensus 324 GETrtl~V~a~d 335 (381)
T PF04744_consen 324 GETRTLTVEAQD 335 (381)
T ss_dssp T-EEEEEEEEE-
T ss_pred CceEEEEEEeeh
Confidence 999999998743
No 91
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=54.62 E-value=33 Score=32.91 Aligned_cols=76 Identities=12% Similarity=0.217 Sum_probs=54.3
Q ss_pred EecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCcceee
Q 046746 428 MDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAGMWN 507 (561)
Q Consensus 428 ~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG~w~ 507 (561)
+.+|.|..|++.+...|- .| .|+|=+-+ .++|.+ ||....+.|.++.||.|-
T Consensus 132 l~iP~g~~v~~~ltS~DV-iH-------sf~vP~l~-----------------~k~dai---PG~~~~~~~~~~~~G~y~ 183 (217)
T TIGR01432 132 LNIPKDRPVLFKLQSADT-MT-------SFWIPQLG-----------------GQKYAM---TGMTMNWYLQADQVGTYR 183 (217)
T ss_pred EEEECCCEEEEEEECCch-hh-------hhhchhhC-----------------ceeecC---CCceEEEEEEeCCCEEEE
Confidence 568999999999987753 23 55552221 235655 688889999999999999
Q ss_pred eecccchh-hhccceEEEEEecCCc
Q 046746 508 LRSNIWER-NYLGQQLYLSVRLHKR 531 (561)
Q Consensus 508 ~HCHil~H-~d~GMm~~~~V~~~~~ 531 (561)
-.|=-+-= .|.-|...++|..+++
T Consensus 184 g~Cae~CG~~Hs~M~~~v~v~~~~~ 208 (217)
T TIGR01432 184 GRNANFNGEGFADQTFDVNAVSEKD 208 (217)
T ss_pred EEehhhcCccccCCeEEEEEeCHHH
Confidence 99975422 2557888888877654
No 92
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=54.03 E-value=41 Score=26.14 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=30.6
Q ss_pred EEcCCE--EEEEEEEcCCCc--eEEEEEeCcccEEEeecCcccceeeeeeEEEcccceEEEEEEeC--C--CCCceEEEE
Q 046746 219 MKAGKV--YKYRICNVGVKT--SLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTAN--Q--DPKDYYLIA 290 (561)
Q Consensus 219 v~~G~~--~rlRliN~~~~~--~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~--~--~~g~y~i~~ 290 (561)
+++|+. +.+.+-|.+... ...+++..=.=|.+.. .+..+. .|.||+...+-++.. . .+|+|.|.+
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~-----~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v~~ 73 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSA-----SPASVP--SLPPGESVTVTFTVTVPADAAPGTYTVTV 73 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE--------EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeCCCCccccC-----Cccccc--cCCCCCEEEEEEEEECCCCCCCceEEEEE
Confidence 345664 467888988644 3444443211111111 233333 789997776666543 2 479999887
Q ss_pred Ee
Q 046746 291 ST 292 (561)
Q Consensus 291 ~~ 292 (561)
..
T Consensus 74 ~a 75 (78)
T PF10633_consen 74 TA 75 (78)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 93
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=53.34 E-value=1.2e+02 Score=24.31 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=40.1
Q ss_pred EEEcCCEE--EEEEEEcCCCceEEEEEeCcccEEEeecCcccceeeeeeE-EEcccceEEEEEEeCC-CCCceEEEEEe
Q 046746 218 TMKAGKVY--KYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESL-DVHVGQCFTVLVTANQ-DPKDYYLIAST 292 (561)
Q Consensus 218 ~v~~G~~~--rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v-~l~pgeR~dv~v~~~~-~~g~y~i~~~~ 292 (561)
.+..|+.+ .+.+-|.|....-.+.+. +-.||..+ ....| .|.||+...+-+.... .+|.|.+++..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence 45667755 577899988764444443 33456554 33344 7899999988887653 57888887763
No 94
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=53.24 E-value=44 Score=32.33 Aligned_cols=78 Identities=5% Similarity=-0.007 Sum_probs=55.8
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCcc
Q 046746 425 PNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAG 504 (561)
Q Consensus 425 ~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG 504 (561)
.+.+.+|.|+.+++.+...+-. |.|+|-+-+ ...|.+ ||....+.|.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DVi--------Hsf~ip~~~-----------------~k~da~---PG~~~~~~~~~~~~G 190 (230)
T MTH00129 139 DHRMVVPVESPIRVLVSAEDVL--------HSWAVPALG-----------------VKMDAV---PGRLNQTAFIASRPG 190 (230)
T ss_pred cceEEEecCcEEEEEEEeCccc--------cceeccccC-----------------CccccC---CCceEEEEEEeCCce
Confidence 4456789999999988877533 466664432 123433 688888899999999
Q ss_pred eeeeecccchhh-hccceEEEEEecCC
Q 046746 505 MWNLRSNIWERN-YLGQQLYLSVRLHK 530 (561)
Q Consensus 505 ~w~~HCHil~H~-d~GMm~~~~V~~~~ 530 (561)
.+...|.-+--. |..|-..++|..++
T Consensus 191 ~~~g~C~e~CG~~H~~M~~~v~vv~~~ 217 (230)
T MTH00129 191 VFYGQCSEICGANHSFMPIVVEAVPLE 217 (230)
T ss_pred EEEEEChhhccccccCCcEEEEEECHH
Confidence 999999865333 56777777777654
No 95
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=52.41 E-value=92 Score=25.24 Aligned_cols=69 Identities=13% Similarity=0.154 Sum_probs=39.4
Q ss_pred EEcCCEEEEEEE--EcCCCceEEEEEeCc--ccEEEeecCcccceeeeeeEEEcccceEEEEEEeCCC--CCceEEEEEe
Q 046746 219 MKAGKVYKYRIC--NVGVKTSLNFRIQGH--TMKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTANQD--PKDYYLIAST 292 (561)
Q Consensus 219 v~~G~~~rlRli--N~~~~~~~~~~i~gh--~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~--~g~y~i~~~~ 292 (561)
-+|||++.||.+ +... .. -...+. .++|..-+|..+..... ........++.-+.+++. .|.|.|++..
T Consensus 11 YrPGetV~~~~~~~~~~~-~~--~~~~~~~~~v~i~dp~g~~v~~~~~--~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-DF--KPPANSPVTVTIKDPSGNEVFRWSV--NTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-TC--SCESSEEEEEEEEETTSEEEEEEEE--EETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-cc--ccccCCceEEEEECCCCCEEEEEEe--eeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 589999999998 6652 10 011112 35566666655422111 134567778888887754 5999999875
No 96
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=51.89 E-value=25 Score=31.46 Aligned_cols=74 Identities=12% Similarity=0.099 Sum_probs=45.1
Q ss_pred cccCCCeEEEEEEEEEEEecC--CCeeeeEEEECCcC-CCCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCC
Q 046746 22 VEAGSPTFFFTWNVTYGTISP--LGIPQQGILINGQF-PGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDG 98 (561)
Q Consensus 22 ~~a~~~~~~~~l~~~~~~~~~--dG~~~~~~~~Ng~~-pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG 98 (561)
..|-.....|-++.++..... .|+...+ .|.+ +|..-+. .|..++.+++.. .....++..|. .+..+.+|
T Consensus 27 ~~a~~~~~~yf~tpse~~~~~~~~g~~vrv---gG~V~~gSi~~~-~~~~~~F~ltD~-~~~i~V~Y~G~--lPd~F~eg 99 (148)
T PRK13254 27 LYALRQNIVFFYTPSEVAEGEAPAGRRFRL---GGLVEKGSVQRG-DGLTVRFVVTDG-NATVPVVYTGI--LPDLFREG 99 (148)
T ss_pred HHHHHhCCceeeCHHHHhcCCccCCCeEEE---eEEEecCcEEeC-CCCEEEEEEEeC-CeEEEEEECCC--CCccccCC
Confidence 344455566777777654433 2444443 3333 4444343 778888888776 55678888997 66677777
Q ss_pred CCcc
Q 046746 99 VLGT 102 (561)
Q Consensus 99 v~~~ 102 (561)
...+
T Consensus 100 ~~VV 103 (148)
T PRK13254 100 QGVV 103 (148)
T ss_pred CEEE
Confidence 6543
No 97
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=51.60 E-value=58 Score=31.45 Aligned_cols=78 Identities=8% Similarity=0.034 Sum_probs=54.6
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCcc
Q 046746 425 PNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAG 504 (561)
Q Consensus 425 ~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG 504 (561)
.+.+.+|.|..|++.+...+-. |.|+|-+-| .+.|.+ ||....+.|.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DVi--------Hsf~ip~lg-----------------~k~dai---PG~~~~~~~~~~~~G 190 (227)
T MTH00098 139 DNRVVLPMEMPIRMLISSEDVL--------HSWAVPSLG-----------------LKTDAI---PGRLNQTTLMSTRPG 190 (227)
T ss_pred cceEEecCCCEEEEEEEECccc--------ccccccccc-----------------cceecC---CCceEEEEEecCCcE
Confidence 3567789999999988877543 355553322 123443 678888999999999
Q ss_pred eeeeecccchhh-hccceEEEEEecCC
Q 046746 505 MWNLRSNIWERN-YLGQQLYLSVRLHK 530 (561)
Q Consensus 505 ~w~~HCHil~H~-d~GMm~~~~V~~~~ 530 (561)
.+..-|.-+-.. |.-|-..++|..++
T Consensus 191 ~~~g~Cse~CG~~H~~M~~~v~v~~~~ 217 (227)
T MTH00098 191 LYYGQCSEICGSNHSFMPIVLELVPLK 217 (227)
T ss_pred EEEEECccccCcCcCCceEEEEEeCHH
Confidence 999999876444 45677777776654
No 98
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=51.55 E-value=60 Score=31.38 Aligned_cols=78 Identities=9% Similarity=0.049 Sum_probs=54.0
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCcc
Q 046746 425 PNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAG 504 (561)
Q Consensus 425 ~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG 504 (561)
.+-+.+|.|..|++.+.+.| ..| .|+|-+-+ ...|. -||....+.|.++.||
T Consensus 139 dn~lvlP~~~~v~~~~tS~D-ViH-------sf~vP~~~-----------------~k~da---iPG~~~~~~~~~~~~G 190 (228)
T MTH00008 139 DNRAVLPMQTEIRVLVTAAD-VIH-------SWTVPSLG-----------------VKVDA---VPGRLNQIGFTITRPG 190 (228)
T ss_pred CceEEEecCCEEEEEEEeCC-ccc-------cccccccC-----------------cceec---CCCceEEEEEEeCCCE
Confidence 44577899999999999865 334 44442221 12233 3678888899999999
Q ss_pred eeeeecccchhh-hccceEEEEEecCC
Q 046746 505 MWNLRSNIWERN-YLGQQLYLSVRLHK 530 (561)
Q Consensus 505 ~w~~HCHil~H~-d~GMm~~~~V~~~~ 530 (561)
.+..-|.-+-.. |.-|-..++|..++
T Consensus 191 ~~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (228)
T MTH00008 191 VFYGQCSEICGANHSFMPIVLEAVDTK 217 (228)
T ss_pred EEEEEChhhcCcCccCceeEEEEECHH
Confidence 999999866444 55677777777654
No 99
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=50.94 E-value=43 Score=28.07 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=45.0
Q ss_pred EEEEEeCCCCCeeeeeCCccCCCCCCCCCCCccCCccCCCCeEEEEEEecCceeeeeEecCchhhhccCceeEEEEecC
Q 046746 70 VINVFNKLDEPFLLTWPGIQHKKNSWQDGVLGTNCPIPPGKNYTYYLQVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSR 148 (561)
Q Consensus 70 ~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 148 (561)
.|+++|+|.....|..|=- +. .-| .|. ..+.||+++..+|.. +-.|+--|.|+... ....-..-+.|...
T Consensus 2 ~V~I~N~L~~~~~L~vhC~--S~--d~D--lg~-~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~-~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCK--SK--DDD--LGW-HVLKPGQSYSFSFRD-NFFGTTLFWCHFRW-PGGKYHHSFDVYRS 71 (110)
T ss_pred EEEEEECCCCCCeEEEEee--CC--Ccc--CCC-EECCCCCEEEEEEec-CcCCceeEEEEEEE-CCccEEEEEEEEec
Confidence 4889999976666777754 21 122 222 358999999999984 44577777798876 11113566666553
No 100
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=49.47 E-value=74 Score=30.79 Aligned_cols=78 Identities=5% Similarity=0.020 Sum_probs=54.0
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCcc
Q 046746 425 PNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAG 504 (561)
Q Consensus 425 ~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG 504 (561)
.+.+.+|.|..+++.+...|-. |.|+|-+-| ...|.+ ||....+.+.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DVi--------Hsf~iP~lg-----------------~k~dai---PG~~~~~~~~~~~~G 190 (230)
T MTH00185 139 DHRMVVPMESPIRVLITAEDVL--------HSWTVPALG-----------------VKMDAV---PGRLNQATFIISRPG 190 (230)
T ss_pred CCeEEEecCCEEEEEEEcCccc--------ccccccccC-----------------ceeEec---CCceEEEEEEeCCcE
Confidence 4456789999999988877543 355553332 123443 678888889999999
Q ss_pred eeeeecccchhh-hccceEEEEEecCC
Q 046746 505 MWNLRSNIWERN-YLGQQLYLSVRLHK 530 (561)
Q Consensus 505 ~w~~HCHil~H~-d~GMm~~~~V~~~~ 530 (561)
.+.--|.-+-.. |.-|-..++|..++
T Consensus 191 ~~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (230)
T MTH00185 191 LYYGQCSEICGANHSFMPIVVEAVPLE 217 (230)
T ss_pred EEEEEchhhcCcCcCCCeEEEEEECHH
Confidence 999999876444 45566677666543
No 101
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=45.84 E-value=27 Score=30.43 Aligned_cols=20 Identities=30% Similarity=0.768 Sum_probs=14.4
Q ss_pred CCCCCccCCccCCCCeEEEE
Q 046746 96 QDGVLGTNCPIPPGKNYTYY 115 (561)
Q Consensus 96 ~DGv~~~q~~i~PG~~~~Y~ 115 (561)
.+||-|-|.-|.||++|+|.
T Consensus 66 G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 66 GEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred CCceecCCceECCCCCeEEe
Confidence 45555557779999987775
No 102
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=43.15 E-value=1.7e+02 Score=26.17 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=34.8
Q ss_pred eEEecCCCEEEEEEEeCCCCCe---eeeeCCccCC------CCCCCCCCC------ccCCccCCCCeEEEEEEec
Q 046746 60 NINSTTNDNLVINVFNKLDEPF---LLTWPGIQHK------KNSWQDGVL------GTNCPIPPGKNYTYYLQVK 119 (561)
Q Consensus 60 ~i~v~~Gd~v~v~v~N~l~~~~---~iH~HG~~~~------~~~~~DGv~------~~q~~i~PG~~~~Y~f~~~ 119 (561)
.=.++.|.+..|.+.=...+.+ .--.||+-.- +-++.||-. ++-||+.+||.++|.+.++
T Consensus 49 pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~slp 123 (158)
T KOG4063|consen 49 PCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSLP 123 (158)
T ss_pred ceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEee
Confidence 3456777777766665553321 1223343221 122345532 1479999999999999875
No 103
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=43.10 E-value=90 Score=30.15 Aligned_cols=78 Identities=8% Similarity=0.004 Sum_probs=54.6
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCcc
Q 046746 425 PNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAG 504 (561)
Q Consensus 425 ~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG 504 (561)
.+.+.+|.|..+++.+...|-. |.|+|-+-+ .+.|.+ ||..-.+.|.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DVi--------Hsf~vP~lg-----------------~K~Dav---PG~~n~~~~~~~~~G 190 (227)
T MTH00117 139 DHRMVIPMESPIRILITAEDVL--------HSWAVPSLG-----------------VKTDAV---PGRLNQTSFITTRPG 190 (227)
T ss_pred cceEEEecCceEEEEEEecchh--------hcccccccC-----------------ceeEec---CCceEEEEEEEcccc
Confidence 4567789999999988877543 456553332 234444 688888999999999
Q ss_pred eeeeecccchhh-hccceEEEEEecCC
Q 046746 505 MWNLRSNIWERN-YLGQQLYLSVRLHK 530 (561)
Q Consensus 505 ~w~~HCHil~H~-d~GMm~~~~V~~~~ 530 (561)
.+.--|--+--. |.-|-..++|.+++
T Consensus 191 ~y~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (227)
T MTH00117 191 VFYGQCSEICGANHSFMPIVVESVPLK 217 (227)
T ss_pred eEEEEeccccccCccCCeEEEEEcCHH
Confidence 999999866444 45666677666554
No 104
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=41.54 E-value=1.9e+02 Score=27.18 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=44.0
Q ss_pred ceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEeecCcccceeeeeeEEEcccceEEEEEEeCCCCCceEEEEEeec
Q 046746 215 PLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTANQDPKDYYLIASTRF 294 (561)
Q Consensus 215 p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~ 294 (561)
..+.++.|+.+||++-... -.|.|.+.+...+ +..-||..-.+-++++ .+|.|..+++...
T Consensus 116 ~~l~lp~g~~v~~~ltS~D--ViHsf~vp~l~~k----------------~d~~PG~~~~~~~~~~-~~G~y~g~C~e~C 176 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSD--VIHSFSVPDLNLK----------------MDAIPGRINHLFFCPD-RHGVFVGYCSELC 176 (194)
T ss_pred ceEEEeCCCEEEeeeecCc--cccceeccccCce----------------eecCCCceEEEEEEcC-CCEEEEEEeehhh
Confidence 3588999999999987643 3555565543332 3455888888888887 8999999988653
No 105
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=39.27 E-value=24 Score=29.13 Aligned_cols=34 Identities=29% Similarity=0.251 Sum_probs=27.8
Q ss_pred EEECCcCCCCeEEecCCCEEEEEEEeCCCCCeee
Q 046746 50 ILINGQFPGPNINSTTNDNLVINVFNKLDEPFLL 83 (561)
Q Consensus 50 ~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~i 83 (561)
+.+||+.--|.=.|+.||.|.|++.|.+-.-..+
T Consensus 36 V~vNG~~aKpS~~VK~GD~l~i~~~~~~~~v~Vl 69 (100)
T COG1188 36 VKVNGQRAKPSKEVKVGDILTIRFGNKEFTVKVL 69 (100)
T ss_pred EEECCEEcccccccCCCCEEEEEeCCcEEEEEEE
Confidence 5689988889999999999999999987443333
No 106
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=38.89 E-value=20 Score=29.15 Aligned_cols=22 Identities=27% Similarity=0.653 Sum_probs=12.8
Q ss_pred CCCCCccCCccCCCCeEEEEEE
Q 046746 96 QDGVLGTNCPIPPGKNYTYYLQ 117 (561)
Q Consensus 96 ~DGv~~~q~~i~PG~~~~Y~f~ 117 (561)
.+||-|-|.-|.||++|+|.=-
T Consensus 49 G~GVVG~~P~L~pGe~f~Y~S~ 70 (90)
T PF04379_consen 49 GEGVVGQQPVLAPGESFEYTSG 70 (90)
T ss_dssp EESBTTB--EE-TTEEEEEEEE
T ss_pred CCceEccCceECCCCcEEEcCC
Confidence 3555554666999998887643
No 107
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=38.77 E-value=93 Score=32.46 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=50.5
Q ss_pred CCCceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEeecCcccceeeeeeEEEcccceEEEEEEeCCCCCceEEEEE
Q 046746 212 DNEPLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTANQDPKDYYLIAS 291 (561)
Q Consensus 212 ~~~p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~ 291 (561)
|....+++++|+ ++|.+.|.+.... . |+++ +|..+.. . .=.|.||....+.+.+ .||+|.+.+.
T Consensus 41 c~p~~~tVpAG~-~~f~V~N~~~~~~-E-------fe~~--~~~~vv~-e--~EnIaPG~s~~l~~~L--~pGtY~~~C~ 104 (375)
T PRK10378 41 CEPMTLTVNAGK-TQFIIQNHSQKAL-E-------WEIL--KGVMVVE-E--RENIAPGFSQKMTANL--QPGEYDMTCG 104 (375)
T ss_pred cccCceeeCCCC-EEEEEEeCCCCcc-e-------EEee--ccccccc-c--ccccCCCCceEEEEec--CCceEEeecC
Confidence 355899999996 8999999987542 3 3333 2221100 1 1278999888888777 5899999984
Q ss_pred eeccCCcceeEEEEEecCC
Q 046746 292 TRFTRTVITTTAIVRYSDS 310 (561)
Q Consensus 292 ~~~~~~~~~~~ail~y~~~ 310 (561)
.. + ...+.+.+.|.
T Consensus 105 ~~--~---~~~g~l~Vtg~ 118 (375)
T PRK10378 105 LL--T---NPKGKLIVKGE 118 (375)
T ss_pred cC--C---CCCceEEEeCC
Confidence 32 1 12455666654
No 108
>PRK10301 hypothetical protein; Provisional
Probab=37.93 E-value=1.9e+02 Score=24.90 Aligned_cols=23 Identities=13% Similarity=0.495 Sum_probs=13.2
Q ss_pred CCEEEEEEEeCC-CCCeeeeeCCc
Q 046746 66 NDNLVINVFNKL-DEPFLLTWPGI 88 (561)
Q Consensus 66 Gd~v~v~v~N~l-~~~~~iH~HG~ 88 (561)
+.++.+.+.-.| +-.+++.|+.+
T Consensus 85 ~~~~~v~l~~~L~~G~YtV~Wrvv 108 (124)
T PRK10301 85 QKQLIVPLADSLKPGTYTVDWHVV 108 (124)
T ss_pred CcEEEEECCCCCCCccEEEEEEEE
Confidence 445555554344 44567777776
No 109
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=37.53 E-value=1.6e+02 Score=28.33 Aligned_cols=61 Identities=10% Similarity=0.099 Sum_probs=44.2
Q ss_pred ceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEeecCcccceeeeeeEEEcccceEEEEEEeCCCCCceEEEEEeec
Q 046746 215 PLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTANQDPKDYYLIASTRF 294 (561)
Q Consensus 215 p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~ 294 (561)
..+.+..|+.+||++-+.. -.|.|.+.+...+ +..-||..-.+-++++ .+|.|+..++...
T Consensus 140 n~l~lP~~~~v~~~~ts~D--ViHsf~ip~~~~k----------------~d~~Pg~~~~~~~~~~-~~g~y~~~C~e~C 200 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSAD--VIHSWTVPSLGVK----------------VDAIPGRLNQLSFEPK-RPGVFYGQCSEIC 200 (228)
T ss_pred CeEEEeeCcEEEEEEEcCc--cccceeccccCce----------------eECCCCcceeEEEEeC-CCEEEEEECcccc
Confidence 5688999999999998844 3445555543332 3456888888888887 7999998887543
No 110
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=37.50 E-value=1.2e+02 Score=29.22 Aligned_cols=78 Identities=6% Similarity=0.021 Sum_probs=54.2
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCcc
Q 046746 425 PNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAG 504 (561)
Q Consensus 425 ~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG 504 (561)
.+.+.+|.|..+++.+...+-. |.|+|=+-+ ...|.+ ||....+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~tS~DVi--------Hsf~vP~lg-----------------~k~da~---PG~~n~~~~~~~~~G 190 (228)
T MTH00076 139 DNRMVVPMESPIRMLITAEDVL--------HSWAVPSLG-----------------IKTDAI---PGRLNQTSFIASRPG 190 (228)
T ss_pred CceEEEecCCEEEEEEEecccc--------ccccccccC-----------------ceEEcc---CCcceeEEEEeCCcE
Confidence 3567789999999988877533 345552221 223444 677888899999999
Q ss_pred eeeeecccchhh-hccceEEEEEecCC
Q 046746 505 MWNLRSNIWERN-YLGQQLYLSVRLHK 530 (561)
Q Consensus 505 ~w~~HCHil~H~-d~GMm~~~~V~~~~ 530 (561)
.+.--|.-+-.. |..|-..++|.+++
T Consensus 191 ~~~g~C~e~CG~~Hs~M~~~v~vv~~~ 217 (228)
T MTH00076 191 VYYGQCSEICGANHSFMPIVVEATPLN 217 (228)
T ss_pred EEEEEChhhcCccccCCceEEEEeCHH
Confidence 999999876443 55677777776654
No 111
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=37.47 E-value=1.5e+02 Score=28.99 Aligned_cols=79 Identities=6% Similarity=0.077 Sum_probs=54.9
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCcc
Q 046746 425 PNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAG 504 (561)
Q Consensus 425 ~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG 504 (561)
.+.+.+|.|..|++.+... +..|.|.+-. -+ .++|.+ ||..-.+.|.++.||
T Consensus 150 ~n~lvlP~~~~v~~~~tS~-DViHsf~iP~-------lg-----------------vK~Dai---PG~~n~~~~~~~~~G 201 (240)
T MTH00023 150 DNRLVVPINTHVRILVTGA-DVLHSFAVPS-------LG-----------------LKIDAV---PGRLNQTGFFIKRPG 201 (240)
T ss_pred CceEEEecCCEEEEEEEcC-Ccccceeecc-------cC-----------------ceeecC---CCcceeEEEEcCCCE
Confidence 4557799999999988876 4445554422 21 234544 577778899999999
Q ss_pred eeeeecccchhh-hccceEEEEEecCCc
Q 046746 505 MWNLRSNIWERN-YLGQQLYLSVRLHKR 531 (561)
Q Consensus 505 ~w~~HCHil~H~-d~GMm~~~~V~~~~~ 531 (561)
.+.-.|.-+--. |.-|-..++|.++++
T Consensus 202 ~y~g~C~e~CG~~Hs~M~~~v~vv~~~~ 229 (240)
T MTH00023 202 VFYGQCSEICGANHSFMPIVIEAVSLDK 229 (240)
T ss_pred EEEEEchhhcCcCccCCeEEEEEECHHH
Confidence 999999876544 556777777776543
No 112
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=36.02 E-value=84 Score=28.32 Aligned_cols=77 Identities=12% Similarity=0.107 Sum_probs=46.6
Q ss_pred cccCCCeEEEEEEEEEEEecCCCeeeeEEEECCc-CCCCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCCC
Q 046746 22 VEAGSPTFFFTWNVTYGTISPLGIPQQGILINGQ-FPGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGVL 100 (561)
Q Consensus 22 ~~a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~-~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv~ 100 (561)
..|-.....|-++.++......- ....+-+-|. .+|-..|-..+-.|+.+++ +......++..|+ .+.-+.+|..
T Consensus 27 ~~al~~n~~yF~tpsEv~~~~~~-~~~~~RlGG~V~~GSv~r~~~~~~v~F~vt-D~~~~v~V~Y~Gi--lPDlFrEGqg 102 (155)
T PRK13159 27 VLALQRNMSYLFTPSQVRAGAAA-GYQQFRLGGMVKAGSIQRAADSLKVSFTVI-DKNAATQVEYTGI--LPDLFRDNQS 102 (155)
T ss_pred HHHhhhCceEEECHHHHhcCCcc-cCCeEEEccEEecCcEEEcCCCcEEEEEEE-cCCcEEEEEEccC--CCccccCCCe
Confidence 44556667888888886553221 1233444454 4666666333336777776 3455678888998 6666777765
Q ss_pred cc
Q 046746 101 GT 102 (561)
Q Consensus 101 ~~ 102 (561)
.+
T Consensus 103 VV 104 (155)
T PRK13159 103 VI 104 (155)
T ss_pred EE
Confidence 43
No 113
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=35.70 E-value=95 Score=23.30 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=26.7
Q ss_pred EEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEeecCcccceeeeeeEEEcccceEE
Q 046746 217 FTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFT 274 (561)
Q Consensus 217 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~d 274 (561)
+++.+|+..+||.-... .+.+.+-..++.. +|. .+-+.|.+||++.
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~ 47 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR-EGD------PDDYWLQAGDSLR 47 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC-CCC------CCCEEECCCCEEE
Confidence 56778888888854322 3666666777754 442 2234455555554
No 114
>COG1470 Predicted membrane protein [Function unknown]
Probab=35.20 E-value=3.9e+02 Score=28.69 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=48.5
Q ss_pred ceEEEEcCC--EEEEEEEEcCCCc--eEEEEEeCcccEEEeecCcccceeeeeeEEEcccceEEE--EEEeCC--CCCce
Q 046746 215 PLFTMKAGK--VYKYRICNVGVKT--SLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTV--LVTANQ--DPKDY 286 (561)
Q Consensus 215 p~~~v~~G~--~~rlRliN~~~~~--~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv--~v~~~~--~~g~y 286 (561)
..+++++|+ ..++++-|.|+.. .+.+.+++-+=|=+.+|+..+. .|.||+|-.| -++++. .+|+|
T Consensus 389 ~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~-------sL~pge~~tV~ltI~vP~~a~aGdY 461 (513)
T COG1470 389 YRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIP-------SLEPGESKTVSLTITVPEDAGAGDY 461 (513)
T ss_pred EEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECccccc-------ccCCCCcceEEEEEEcCCCCCCCcE
Confidence 466777885 6789999998654 5566666665566677766332 4566766544 445543 46899
Q ss_pred EEEEEeecc
Q 046746 287 YLIASTRFT 295 (561)
Q Consensus 287 ~i~~~~~~~ 295 (561)
.+......+
T Consensus 462 ~i~i~~ksD 470 (513)
T COG1470 462 RITITAKSD 470 (513)
T ss_pred EEEEEEeec
Confidence 988875543
No 115
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=35.19 E-value=16 Score=31.96 Aligned_cols=74 Identities=11% Similarity=0.114 Sum_probs=37.9
Q ss_pred ccCCCeEEEEEEEEEEEecCC--CeeeeEEEECCcC-CCCeEEecCCCEEEEEEEeCCCCCeeeeeCCccCCCCCCCCCC
Q 046746 23 EAGSPTFFFTWNVTYGTISPL--GIPQQGILINGQF-PGPNINSTTNDNLVINVFNKLDEPFLLTWPGIQHKKNSWQDGV 99 (561)
Q Consensus 23 ~a~~~~~~~~l~~~~~~~~~d--G~~~~~~~~Ng~~-pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DGv 99 (561)
.+......|-+++++...... |+...+ .|.. +|..-+-..+..++..++.. .....++.+|. .+..+.+|.
T Consensus 27 ~~~~~~~~yy~t~se~~~~~~~~~~~vrv---~G~V~~gSv~~~~~~~~~~F~i~D~-~~~i~V~Y~G~--~Pd~F~eg~ 100 (131)
T PF03100_consen 27 YSFSDSAVYYLTPSELAAEPQKVGRKVRV---GGLVVEGSVEYDPDGNTLTFTITDG-GKEIPVVYTGP--LPDLFREGQ 100 (131)
T ss_dssp -----SSS-EE-TTTTTTTST-TTSEEEE---EEEEECTTEEE-TTSSEEEEEEE-S-S-EEEEEEES----CTT--TTS
T ss_pred HHhhccceEEcCHHHHhhccccCCceEEE---eeEEccCCEEEcCCCCEEEEEEEEC-CcEEEEEECCC--CCccccCCC
Confidence 333445566777766554443 444333 3332 45544445789999999877 45578899997 666777876
Q ss_pred Ccc
Q 046746 100 LGT 102 (561)
Q Consensus 100 ~~~ 102 (561)
..+
T Consensus 101 ~VV 103 (131)
T PF03100_consen 101 GVV 103 (131)
T ss_dssp EEE
T ss_pred eEE
Confidence 554
No 116
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=34.85 E-value=1.6e+02 Score=24.88 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=27.2
Q ss_pred EEEEEEEEcCCCc-eEEEEEeCcc-cEEEeecCcccceeeeeeEEEcccceEEEEEEeC
Q 046746 224 VYKYRICNVGVKT-SLNFRIQGHT-MKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTAN 280 (561)
Q Consensus 224 ~~rlRliN~~~~~-~~~~~i~gh~-~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~ 280 (561)
.|+++|+|-+... .+.+.++|.. +++ . .....+.|.+|+..++-|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l--------~-~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAEL--------Q-GPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE----------ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEE--------E-CCCcceEECCCCEEEEEEEEE
Confidence 5899999999866 5677776642 222 1 134567888888887766543
No 117
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=34.61 E-value=1.3e+02 Score=25.77 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=40.9
Q ss_pred EEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEeecCccccee----eeeeEEEcccceEEEEEEeCC--CCCceEEEEE
Q 046746 218 TMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQN----EYESLDVHVGQCFTVLVTANQ--DPKDYYLIAS 291 (561)
Q Consensus 218 ~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~----~~~~v~l~pgeR~dv~v~~~~--~~g~y~i~~~ 291 (561)
.+..|+.+++++-=......-.+.+ .+.+...+|..+--. ....+....++++.+.++++. .+|.|.|.+.
T Consensus 30 ~~~~ge~~~i~i~~~~~~~i~~~~~---~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i~v~ 106 (142)
T PF14524_consen 30 SFESGEPIRIRIDYEVNEDIDDPVF---GFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSISVG 106 (142)
T ss_dssp SEETTSEEEEEEEEEESS-EEEEEE---EEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEEEEE
T ss_pred EEeCCCEEEEEEEEEECCCCCccEE---EEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEEEEE
Confidence 4777888888876555444333332 255666677655321 122344444999999998875 5899999886
Q ss_pred e
Q 046746 292 T 292 (561)
Q Consensus 292 ~ 292 (561)
-
T Consensus 107 l 107 (142)
T PF14524_consen 107 L 107 (142)
T ss_dssp E
T ss_pred E
Confidence 4
No 118
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=33.80 E-value=14 Score=38.22 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=0.0
Q ss_pred eeeeeCCccCCCCCCCCCCCcc-CCccCCCCeEEEEEEecCceeeeeEe
Q 046746 81 FLLTWPGIQHKKNSWQDGVLGT-NCPIPPGKNYTYYLQVKDQIGSYIYH 128 (561)
Q Consensus 81 ~~iH~HG~~~~~~~~~DGv~~~-q~~i~PG~~~~Y~f~~~~~~Gt~wYH 128 (561)
.-+-|.|+..+ -.++|..-- -..|+||++.+-+|++ +.+||..
T Consensus 78 ~~V~F~Gi~~~--~~~~~L~~d~F~~L~pG~sve~~fDi---A~~~dLs 121 (359)
T PF02102_consen 78 KEVPFTGIRLR--YDTSGLTEDAFQTLAPGESVEVEFDI---AETHDLS 121 (359)
T ss_dssp -------------------------------------------------
T ss_pred cccccccEEEE--EecCCCCHHHceecCCCCeEEEEEcc---hheeecC
Confidence 45667777553 235554221 4579999999999997 5576654
No 119
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=33.40 E-value=1.6e+02 Score=28.51 Aligned_cols=79 Identities=6% Similarity=0.034 Sum_probs=53.7
Q ss_pred cceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCc
Q 046746 424 QPNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNA 503 (561)
Q Consensus 424 ~~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnp 503 (561)
..+.+.+|.|+.+++.+.+.+ ..| .|+|-+-| ...|.+ ||....+.|.++.|
T Consensus 142 vdn~lvlP~~~~v~~~itS~D-ViH-------sf~vp~lg-----------------~k~dai---PG~~~~~~~~~~~~ 193 (234)
T MTH00051 142 VDNRLIVPIQTQVRVLVTAAD-VLH-------SFAVPSLS-----------------VKIDAV---PGRLNQTSFFIKRP 193 (234)
T ss_pred cceEEEEecCcEEEEEEEeCc-hhc-------cccccccC-----------------ceeEcc---CCceEeEEEEeCCC
Confidence 345678999999999999874 334 44442221 123433 67778889999999
Q ss_pred ceeeeecccchhh-hccceEEEEEecCC
Q 046746 504 GMWNLRSNIWERN-YLGQQLYLSVRLHK 530 (561)
Q Consensus 504 G~w~~HCHil~H~-d~GMm~~~~V~~~~ 530 (561)
|.+-.-|.-+--. |.-|-..++|..++
T Consensus 194 G~y~g~Cse~CG~~Hs~M~i~v~vv~~~ 221 (234)
T MTH00051 194 GVFYGQCSEICGANHSFMPIVIEGVSLD 221 (234)
T ss_pred EEEEEEChhhcCcccccCeeEEEEECHH
Confidence 9999999865433 45666677776654
No 120
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=33.13 E-value=87 Score=31.85 Aligned_cols=74 Identities=8% Similarity=0.128 Sum_probs=51.5
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCccee
Q 046746 427 VMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAGMW 506 (561)
Q Consensus 427 ~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG~w 506 (561)
-+.+|.|..|++.+...+-+ | .|+|=.-+ ...|.+ ||-...+.|.+|.||.|
T Consensus 152 eL~iP~g~pV~f~lTS~DVi-H-------SF~IP~Lg-----------------~K~dam---PG~~n~l~~~a~~~G~Y 203 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNSVM-N-------SFFIPRLG-----------------SQIYAM---AGMQTRLHLIANEPGTY 203 (315)
T ss_pred cEEEecCCEEEEEEEEchhh-h-------hhhhhhhC-----------------CeeecC---CCceeEEEEEcCCCEEE
Confidence 35689999999988877532 4 45553322 123443 68888999999999999
Q ss_pred eeecccchh-hhccceEEEEEec
Q 046746 507 NLRSNIWER-NYLGQQLYLSVRL 528 (561)
Q Consensus 507 ~~HCHil~H-~d~GMm~~~~V~~ 528 (561)
.-.|--.-= -+..|...+.|..
T Consensus 204 ~G~CaEyCG~gHs~M~f~v~v~~ 226 (315)
T PRK10525 204 DGISASYSGPGFSGMKFKAIATP 226 (315)
T ss_pred EEEChhhcCccccCCeEEEEEEC
Confidence 999986642 2456777776653
No 121
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=32.02 E-value=2.5e+02 Score=24.16 Aligned_cols=61 Identities=10% Similarity=0.229 Sum_probs=39.5
Q ss_pred eEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEeecCccc-------ceeeeeeEEEcccceEEEEEEeCC
Q 046746 216 LFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHV-------VQNEYESLDVHVGQCFTVLVTANQ 281 (561)
Q Consensus 216 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~-------~p~~~~~v~l~pgeR~dv~v~~~~ 281 (561)
.|++.....|+|++-..+ ..++.|+|..+ +..++..- ......++.|..|++|+|-|....
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 356655667999988433 45777887654 55555432 345667788999999999887653
No 122
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.74 E-value=1.4e+02 Score=28.69 Aligned_cols=79 Identities=10% Similarity=0.089 Sum_probs=54.1
Q ss_pred cceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCc
Q 046746 424 QPNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNA 503 (561)
Q Consensus 424 ~~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnp 503 (561)
..+.+.+|.|..|++.+...| ..|. |+|=+-+ .++|.+ ||..-.+.|.++.|
T Consensus 138 ~~n~l~lP~~~~v~~~~tS~D-ViHs-------f~vP~l~-----------------~K~Dai---PG~~n~~~~~~~~~ 189 (226)
T MTH00139 138 VDNRLVLPYKSNIRALITAAD-VLHS-------WTVPSLG-----------------VKIDAV---PGRLNQVGFFINRP 189 (226)
T ss_pred cCceEEEecCCEEEEEEecCc-cccc-------eeccccC-----------------ccccCC---CCcEEEEEEEcCCC
Confidence 345677899999999888764 3344 4442222 234655 57788899999999
Q ss_pred ceeeeecccchhh-hccceEEEEEecCC
Q 046746 504 GMWNLRSNIWERN-YLGQQLYLSVRLHK 530 (561)
Q Consensus 504 G~w~~HCHil~H~-d~GMm~~~~V~~~~ 530 (561)
|.+.--|--+-=. |.-|-..++|.+++
T Consensus 190 G~y~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (226)
T MTH00139 190 GVFYGQCSEICGANHSFMPIVVEAISPK 217 (226)
T ss_pred EEEEEEChhhcCcCcCCCeEEEEEeCHH
Confidence 9999999865322 44666777776654
No 123
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=31.73 E-value=2.9e+02 Score=23.66 Aligned_cols=63 Identities=13% Similarity=0.217 Sum_probs=35.9
Q ss_pred EEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEeecCccc-ceeeeeeEEEcccceEEEEEEeCCCCC
Q 046746 217 FTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHV-VQNEYESLDVHVGQCFTVLVTANQDPK 284 (561)
Q Consensus 217 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~-~p~~~~~v~l~pgeR~dv~v~~~~~~g 284 (561)
|++.....|+|.+... ...++.|+|. .|+..++..- .......+.|..|++|.|.|...+..+
T Consensus 52 i~~~~~G~y~f~~~~~---~~~~l~Idg~--~vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~~ 115 (136)
T smart00758 52 LKPPEDGEYTFSITSD---DGARLWIDGK--LVIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAGT 115 (136)
T ss_pred EECCCCccEEEEEEcC---CcEEEEECCc--EEEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCCC
Confidence 4454445688888533 3457778775 3344333221 122344678888888888887653333
No 124
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=31.71 E-value=2.5e+02 Score=26.92 Aligned_cols=88 Identities=14% Similarity=0.166 Sum_probs=61.1
Q ss_pred CCCeeeeEEEECCcCCCCeEEecCCCEEEEEEEeCCCCC-----eeeeeCCccCCCCCCCCCCCccCCccCCCCeEEEEE
Q 046746 42 PLGIPQQGILINGQFPGPNINSTTNDNLVINVFNKLDEP-----FLLTWPGIQHKKNSWQDGVLGTNCPIPPGKNYTYYL 116 (561)
Q Consensus 42 ~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~-----~~iH~HG~~~~~~~~~DGv~~~q~~i~PG~~~~Y~f 116 (561)
++|..-=-+++.|.+-.-.|.|..|..+++++.=+.+-+ .+--+|+. ...+-+|...-+|
T Consensus 80 ~~g~qeIsitv~gGy~p~~IvV~~~v~~rl~f~Rkdpspcle~i~~pdfgia---------------anlpl~q~ssIe~ 144 (272)
T COG4633 80 PNGIQEISITVDGGYIPSRIVVVDGVPVRLTFKRKDPSPCLESIMSPDFGIA---------------ANLPLNQVSSIEF 144 (272)
T ss_pred cCCceEEEEEEeCCccceeEEEecCcceEeeeccCCCCcchhhccccccccc---------------ccCCcCceeEEEe
Confidence 343333335556666556899999999999998876433 23344443 2356688889999
Q ss_pred EecCceeeeeEecCchhhhccCceeEEEEecCCC
Q 046746 117 QVKDQIGSYIYHPSTGFHRAAGGFGGLCIHSRSV 150 (561)
Q Consensus 117 ~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~ 150 (561)
+ +.+.|+|-+-|-... |.|.++|+.-.+
T Consensus 145 T-~~s~ge~af~cgmnm-----~~G~~~vet~~~ 172 (272)
T COG4633 145 T-PISKGEYAFLCGMNM-----FRGNIQVETLTG 172 (272)
T ss_pred c-cccccchhhhcchhh-----ccCeeEEEecCC
Confidence 8 788999988776543 789999998543
No 125
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=29.53 E-value=54 Score=29.20 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=21.0
Q ss_pred eCCCcEEEEEEEe-CCc---ceeeeecccc
Q 046746 488 VFPNCWAAILVSM-DNA---GMWNLRSNIW 513 (561)
Q Consensus 488 vp~~g~~~irf~a-dnp---G~w~~HCHil 513 (561)
|+||..+.|.+.. .|| |.|.|+|-..
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 5789999999965 576 8999999764
No 126
>PRK11372 lysozyme inhibitor; Provisional
Probab=29.17 E-value=2.4e+02 Score=23.77 Aligned_cols=16 Identities=13% Similarity=0.170 Sum_probs=6.8
Q ss_pred CchhHHHHHHHHHHHH
Q 046746 1 MVATRLMMLLICFLAA 16 (561)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (561)
|+.+..+++++.+++|
T Consensus 3 mk~ll~~~~~~lL~gC 18 (109)
T PRK11372 3 MKKLLIICLPVLLTGC 18 (109)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 4444443344444444
No 127
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=28.20 E-value=26 Score=32.03 Aligned_cols=28 Identities=11% Similarity=0.366 Sum_probs=24.3
Q ss_pred EEecCCCEEEEEEEeCCCCCeeeeeCCc
Q 046746 61 INSTTNDNLVINVFNKLDEPFLLTWPGI 88 (561)
Q Consensus 61 i~v~~Gd~v~v~v~N~l~~~~~iH~HG~ 88 (561)
+..+.++++.+++.|++....++||||+
T Consensus 71 ~~~n~~~~~~~d~~~rlt~~~s~~W~~v 98 (191)
T KOG4387|consen 71 LPGNDRKPGILDFQERLTVAKSMNWHGV 98 (191)
T ss_pred ccccCCCCcEEeccchhheeeecccceE
Confidence 4456678889999999999999999997
No 128
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=28.18 E-value=2.4e+02 Score=24.20 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=33.7
Q ss_pred CeEEecCCCEEEEEEEeCCCC---CeeeeeC----CccCC-CCCCCCCCCccCCccCCCCeEEEEEEec
Q 046746 59 PNINSTTNDNLVINVFNKLDE---PFLLTWP----GIQHK-KNSWQDGVLGTNCPIPPGKNYTYYLQVK 119 (561)
Q Consensus 59 P~i~v~~Gd~v~v~v~N~l~~---~~~iH~H----G~~~~-~~~~~DGv~~~q~~i~PG~~~~Y~f~~~ 119 (561)
..=.++.|..+.+.+.=..++ ......| |+... +.+..||=-.+.|||..|++++|.+.++
T Consensus 20 ~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 20 DYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred CCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCCcEEEEEEeee
Confidence 344567777777666532222 2233334 33221 1123454212379999999999999863
No 129
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=27.56 E-value=1.2e+02 Score=21.39 Aligned_cols=41 Identities=5% Similarity=-0.079 Sum_probs=30.4
Q ss_pred CCCCceeE-EEeCCCcEEEEEEEeCCcceeeeecccchhhhc
Q 046746 478 IDAVSRYT-IQVFPNCWAAILVSMDNAGMWNLRSNIWERNYL 518 (561)
Q Consensus 478 ~~P~~rDT-v~vp~~g~~~irf~adnpG~w~~HCHil~H~d~ 518 (561)
..|..+-+ +..+.|+...+++.-..-..+=+||..+-|...
T Consensus 4 ~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 4 SKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 34554543 335568888888888888899999999999763
No 130
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.64 E-value=2.6e+02 Score=27.04 Aligned_cols=78 Identities=9% Similarity=0.148 Sum_probs=52.8
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCcc
Q 046746 425 PNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAG 504 (561)
Q Consensus 425 ~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG 504 (561)
.+.+.+|.|..+++.+...| ..|.|. |=+-| .+.|.+ ||....+.|.++.||
T Consensus 139 dn~lvlP~~~~v~~~~tS~D-ViHsf~-------iP~lg-----------------~k~dai---PG~~~~~~~~~~~~G 190 (229)
T MTH00038 139 DNRLVLPYQTPIRVLVSSAD-VLHSWA-------VPSLG-----------------VKMDAV---PGRLNQTTFFISRTG 190 (229)
T ss_pred CceEEEecCeEEEEEEEECC-cccccc-------ccccC-----------------ceeecC---CCceEEEEEEcCCCE
Confidence 45677999999998888764 445444 32221 234544 678888899999999
Q ss_pred eeeeecccchhh-hccceEEEEEecCC
Q 046746 505 MWNLRSNIWERN-YLGQQLYLSVRLHK 530 (561)
Q Consensus 505 ~w~~HCHil~H~-d~GMm~~~~V~~~~ 530 (561)
.+..-|--+--. |.-|-..++|.+++
T Consensus 191 ~~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (229)
T MTH00038 191 LFYGQCSEICGANHSFMPIVIESVPFN 217 (229)
T ss_pred EEEEEcccccCcCcCCCeEEEEEeCHH
Confidence 999999876544 34555666666554
No 131
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.34 E-value=2.2e+02 Score=27.53 Aligned_cols=78 Identities=9% Similarity=0.083 Sum_probs=53.2
Q ss_pred ceEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEeecCCCCCcCCCCCCCCCCCCceeEEEeCCCcEEEEEEEeCCcc
Q 046746 425 PNVMDATYKAFMEIVLENRQNTMQSWILDGYAFFAVGMEPGTWNPDKRKSYNLIDAVSRYTIQVFPNCWAAILVSMDNAG 504 (561)
Q Consensus 425 ~~~~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~n~~~P~~rDTv~vp~~g~~~irf~adnpG 504 (561)
.+.+.+|.|+.+++.+...| ..|. |+|=+-+ .++|.+ ||....+.|.++.||
T Consensus 139 dn~l~lP~~~~v~~~~tS~D-ViHs-------f~vp~l~-----------------~k~dav---PG~~~~~~~~~~~~G 190 (227)
T MTH00154 139 DNRLVLPMNTQIRILITAAD-VIHS-------WTVPSLG-----------------VKVDAV---PGRLNQLNFLINRPG 190 (227)
T ss_pred cceEEEecCCEEEEEEEcCc-hhhh-------eeccccC-----------------CeeecC---CCceEEEEEEEcCce
Confidence 34567899999998888764 3444 4442221 234554 678888999999999
Q ss_pred eeeeecccchh-hhccceEEEEEecCC
Q 046746 505 MWNLRSNIWER-NYLGQQLYLSVRLHK 530 (561)
Q Consensus 505 ~w~~HCHil~H-~d~GMm~~~~V~~~~ 530 (561)
.+.--|--+-= -|.-|-..++|.+++
T Consensus 191 ~y~g~Cse~CG~~H~~M~~~v~vv~~~ 217 (227)
T MTH00154 191 LFFGQCSEICGANHSFMPIVIESVSVN 217 (227)
T ss_pred EEEEEeechhCcCccCCeEEEEEeCHH
Confidence 99999986632 345666777776654
No 132
>PRK13202 ureB urease subunit beta; Reviewed
Probab=25.46 E-value=2e+02 Score=23.88 Aligned_cols=64 Identities=16% Similarity=0.096 Sum_probs=39.5
Q ss_pred ceEEEEcC--CEEEEEEEEcCCCceEEEEEeCcccEE--------EeecCcccceeeeeeEEEcccceEEEEEEe
Q 046746 215 PLFTMKAG--KVYKYRICNVGVKTSLNFRIQGHTMKL--------VEMEGSHVVQNEYESLDVHVGQCFTVLVTA 279 (561)
Q Consensus 215 p~~~v~~G--~~~rlRliN~~~~~~~~~~i~gh~~~v--------ia~DG~~~~p~~~~~v~l~pgeR~dv~v~~ 279 (561)
..+++.+| ++..|++.|.|. +.+++.=|=|-+++ -++=|.-+.-..-.++.+.|||.-+|-+..
T Consensus 11 ~~I~ln~grr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 84 (104)
T PRK13202 11 GDIEMNAAALSRLQMRIINAGD-RPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVP 84 (104)
T ss_pred CCEEeCCCCCceEEEEEEeCCC-CceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEE
Confidence 45788888 478999999998 55555444444333 122222232223456788888888887654
No 133
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=25.19 E-value=2.6e+02 Score=23.96 Aligned_cols=18 Identities=39% Similarity=0.901 Sum_probs=15.7
Q ss_pred cCCccCCCCeEEEEEEec
Q 046746 102 TNCPIPPGKNYTYYLQVK 119 (561)
Q Consensus 102 ~q~~i~PG~~~~Y~f~~~ 119 (561)
..|||.+|+.++|.+.++
T Consensus 75 ~~CPl~~G~~~~y~~~~~ 92 (123)
T cd00916 75 TSCPLSAGEDVTYTLSLP 92 (123)
T ss_pred CCCCCcCCcEEEEEEeee
Confidence 469999999999999763
No 134
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=25.16 E-value=5.2e+02 Score=23.49 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=41.0
Q ss_pred ceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEeecCcccceeeeeeEEEcccceEEEEEEeCCCCCceEEEEEee
Q 046746 215 PLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTANQDPKDYYLIASTR 293 (561)
Q Consensus 215 p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 293 (561)
..+.+..|+.+||++..+.. .|.|.+....+++ -.-||..-.+.+.++ .+|.|+..++..
T Consensus 73 n~LvLP~g~~Vr~~lTS~DV--IHSF~VP~lgvK~----------------DavPGr~n~l~~~~~-~~G~y~gqCsEl 132 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITATDV--IHSWSVPSLGIKA----------------DAIPGRLHKINTFIL-REGVFYGQCSEM 132 (162)
T ss_pred CCEEEeCCCEEEEEEEeCcc--ceeeeccccCcee----------------eccCCceEEEEEecC-CCeEEEEEcchh
Confidence 45778999988888766544 4566665544433 334676666777666 799999988754
No 135
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=24.70 E-value=85 Score=27.94 Aligned_cols=29 Identities=31% Similarity=0.627 Sum_probs=23.0
Q ss_pred CCccCCCCeEEEEEE-e--cCceeeeeEecCc
Q 046746 103 NCPIPPGKNYTYYLQ-V--KDQIGSYIYHPST 131 (561)
Q Consensus 103 q~~i~PG~~~~Y~f~-~--~~~~Gt~wYH~H~ 131 (561)
..||+||++++-.+. + |...|+|-|++-.
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 579999999999994 3 4457999988754
No 136
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.68 E-value=52 Score=32.40 Aligned_cols=9 Identities=33% Similarity=0.516 Sum_probs=7.5
Q ss_pred eeeEecCch
Q 046746 124 SYIYHPSTG 132 (561)
Q Consensus 124 t~wYH~H~~ 132 (561)
.=|||||.+
T Consensus 134 VGWyHSHPg 142 (347)
T KOG1554|consen 134 VGWYHSHPG 142 (347)
T ss_pred eeeeecCCC
Confidence 569999975
No 137
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=23.27 E-value=2.6e+02 Score=27.04 Aligned_cols=60 Identities=12% Similarity=0.100 Sum_probs=42.7
Q ss_pred ceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEeecCcccceeeeeeEEEcccceEEEEEEeCCCCCceEEEEEee
Q 046746 215 PLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTANQDPKDYYLIASTR 293 (561)
Q Consensus 215 p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 293 (561)
..+.+..|+.+||++-+.. -.|.|.+.+...+ +..-||..-.+.+.++ .+|.|+..++..
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~vP~~~~k----------------~daiPG~~~~~~~~~~-~~G~~~g~Cse~ 199 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD--VIHSWTVPSLGVK----------------VDAVPGRLNQIGFTIT-RPGVFYGQCSEI 199 (228)
T ss_pred ceEEEecCCEEEEEEEeCC--ccccccccccCcc----------------eecCCCceEEEEEEeC-CCEEEEEEChhh
Confidence 4678899999999998844 3445555544332 2445788888888887 799999887754
No 138
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=23.03 E-value=2.2e+02 Score=30.27 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=28.8
Q ss_pred EEEeCCCcEEEEEEEeCCcceeeee----cccchhhhccceE
Q 046746 485 TIQVFPNCWAAILVSMDNAGMWNLR----SNIWERNYLGQQL 522 (561)
Q Consensus 485 Tv~vp~~g~~~irf~adnpG~w~~H----CHil~H~d~GMm~ 522 (561)
.+.+.|.....+-|.+|-||.|++- ||.++-|..|-|.
T Consensus 593 ~~~v~pq~tasvtf~a~kpgv~w~ycs~fchalh~em~~rml 634 (637)
T COG4263 593 NMEVKPQRTASVTFYADKPGVAWYYCSWFCHALHMEMAGRML 634 (637)
T ss_pred EEEEccCCceEEEEEccCCeeeehhhhhHHHHHHHhhcccee
Confidence 4556677889999999999998865 6777556666554
No 139
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=22.33 E-value=3.4e+02 Score=26.18 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=42.6
Q ss_pred ceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEeecCcccceeeeeeEEEcccceEEEEEEeCCCCCceEEEEEeec
Q 046746 215 PLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTANQDPKDYYLIASTRF 294 (561)
Q Consensus 215 p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~ 294 (561)
..+.+..|+.+||++-.... .|.|.+. .-.-....-||..-.+-++++ ++|.|...+....
T Consensus 139 nel~lP~g~pV~~~ltS~DV--iHSF~VP----------------~l~~K~DaiPG~~n~~~~~~~-~~G~y~g~CaE~C 199 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSV--MNSFFIP----------------QLGSQIYAMAGMQTKLHLIAN-EPGVYDGISANYS 199 (226)
T ss_pred ceEEEECCCEEEEEEEECch--hhhhhhh----------------hcCCeeecCCCceEEEEEEeC-CCEEEEEEchhhc
Confidence 56889999999998876554 3334433 222223455888888888888 7999999887553
No 140
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=21.40 E-value=1.8e+02 Score=23.57 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=23.0
Q ss_pred EEEEEEEEcCCCceEEEEEeCcccEEEeecCcccc---e-eeeeeEEEcccceEEE
Q 046746 224 VYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVV---Q-NEYESLDVHVGQCFTV 275 (561)
Q Consensus 224 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~---p-~~~~~v~l~pgeR~dv 275 (561)
.|++||-|.+... +.|-...+.|...||...+ + +.-..=.|.|||.+..
T Consensus 15 ~Y~I~I~N~~~~~---vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDES---VQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCCC---EEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 4789999988863 3343444444444443210 0 1112336788886543
No 141
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=21.07 E-value=1.5e+02 Score=19.64 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=7.1
Q ss_pred CchhHHHHHHHHHH
Q 046746 1 MVATRLMMLLICFL 14 (561)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (561)
|+.+++.+++..++
T Consensus 1 Mk~l~~a~~l~lLa 14 (36)
T PF08194_consen 1 MKCLSLAFALLLLA 14 (36)
T ss_pred CceeHHHHHHHHHH
Confidence 66666644433333
No 142
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=20.94 E-value=4.5e+02 Score=21.15 Aligned_cols=58 Identities=19% Similarity=0.199 Sum_probs=35.8
Q ss_pred EEcCCEE--EEEEEEcCCCceEEEEEeCc-----ccEEEeecCcccceeeeeeEEEcccceEEEEEEeC-C-CCCceEE
Q 046746 219 MKAGKVY--KYRICNVGVKTSLNFRIQGH-----TMKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTAN-Q-DPKDYYL 288 (561)
Q Consensus 219 v~~G~~~--rlRliN~~~~~~~~~~i~gh-----~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~-~-~~g~y~i 288 (561)
+..|++| .+.|.|.|... .+|++.-. .|.+ ++ ..-.|+||+..++-|.+. . +.|.|.-
T Consensus 16 v~~g~~~~~~v~l~N~s~~p-~~f~v~~~~~~~~~~~v--------~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~~ 82 (102)
T PF14874_consen 16 VFVGQTYSRTVTLTNTSSIP-ARFRVRQPESLSSFFSV--------EP---PSGFLAPGESVELEVTFSPTKPLGDYEG 82 (102)
T ss_pred EccCCEEEEEEEEEECCCCC-EEEEEEeCCcCCCCEEE--------EC---CCCEECCCCEEEEEEEEEeCCCCceEEE
Confidence 4566666 58899999754 45555311 1221 12 123699999999999887 3 3566653
No 143
>PLN00115 pollen allergen group 3; Provisional
Probab=20.69 E-value=1.3e+02 Score=25.78 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=12.6
Q ss_pred CchhHHHHHHHHHHHHHhhc
Q 046746 1 MVATRLMMLLICFLAAATSG 20 (561)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (561)
|+.+..|++.++++++++.+
T Consensus 1 ~~~~~~~~~~~~~a~l~~~~ 20 (118)
T PLN00115 1 MSSLSFLLLAVALAALFAVG 20 (118)
T ss_pred CchhHHHHHHHHHHHHhhhh
Confidence 55656666666777666654
No 144
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=20.41 E-value=3.5e+02 Score=25.78 Aligned_cols=61 Identities=8% Similarity=0.046 Sum_probs=42.6
Q ss_pred ceEEEEcCCEEEEEEEEcCCCceEEEEEeCcccEEEeecCcccceeeeeeEEEcccceEEEEEEeCCCCCceEEEEEeec
Q 046746 215 PLFTMKAGKVYKYRICNVGVKTSLNFRIQGHTMKLVEMEGSHVVQNEYESLDVHVGQCFTVLVTANQDPKDYYLIASTRF 294 (561)
Q Consensus 215 p~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~v~l~pgeR~dv~v~~~~~~g~y~i~~~~~~ 294 (561)
..+.+..|+.+||++-.... .|.|.+ |.-.-....-||..-.+-++++ ++|.|+..++...
T Consensus 130 n~l~iP~g~~v~~~ltS~DV--iHsf~v----------------P~l~~k~daiPG~~~~~~~~~~-~~G~y~g~Cae~C 190 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSADT--MTSFWI----------------PQLGGQKYAMTGMTMNWYLQAD-QVGTYRGRNANFN 190 (217)
T ss_pred CcEEEECCCEEEEEEECCch--hhhhhc----------------hhhCceeecCCCceEEEEEEeC-CCEEEEEEehhhc
Confidence 56788899988888876544 333333 3222223445899889999988 8999999987553
Done!