BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046747
         (92 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54ZG7|TM234_DICDI Transmembrane protein 234 homolog OS=Dictyostelium discoideum
           GN=DDB_G0277575 PE=3 SV=1
          Length = 128

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 47/73 (64%)

Query: 20  QYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGM 79
            YT+P L+NLS S  FF  LS   ISL VP++N+ TF  T+  G+LLGE+     S LGM
Sbjct: 54  SYTIPMLINLSGSVVFFYTLSKVDISLVVPISNSLTFLFTSLMGMLLGEKVLHFKSYLGM 113

Query: 80  ASIVLGVWLCINT 92
             ++ GV +C+++
Sbjct: 114 IFVLAGVTICVSS 126


>sp|A0NGI1|TM234_ANOGA Transmembrane protein 234 homolog OS=Anopheles gambiae
           GN=AGAP012180 PE=3 SV=1
          Length = 140

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 39/75 (52%)

Query: 15  LLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGF 74
           L+  WQY +P ++N   S  +   L  T +SL VP+ N+ TF  TA    LLGER     
Sbjct: 60  LITRWQYLLPLVINQLGSIVYVLTLQRTELSLTVPMANSLTFVFTAITARLLGERQSGWK 119

Query: 75  SLLGMASIVLGVWLC 89
              GM  ++LG  +C
Sbjct: 120 IYCGMTLVILGTVIC 134


>sp|Q8WY98|TM234_HUMAN Transmembrane protein 234 OS=Homo sapiens GN=TMEM234 PE=2 SV=1
          Length = 164

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 3   QKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFF 62
           Q+L   +K    L +  +Y +PFLLN   S  ++  L+ T ++LAVP+ N+     T   
Sbjct: 42  QQLLQEMKT---LFLNTEYLMPFLLNQCGSLLYYLTLASTDLTLAVPICNSLAIIFTLIV 98

Query: 63  GLLLGERTRVGFSLLGMASIVLGVWLCINT 92
           G  LGE      ++ GM   V+G+ LCI +
Sbjct: 99  GKALGEDIGGKRAVAGMVLTVIGISLCITS 128


>sp|Q8R1E7|TM234_MOUSE Transmembrane protein 234 OS=Mus musculus GN=Tmem234 PE=2 SV=1
          Length = 140

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 20  QYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGM 79
           +Y +PFLLN S S  ++  L+ T ++LAVP+ N+     T   G +LGE      ++ GM
Sbjct: 56  EYLMPFLLNQSGSLLYYLTLASTDLTLAVPICNSLAIVFTLIVGKVLGEDIGGKEAVAGM 115

Query: 80  ASIVLGVWLCINT 92
              + G+ +CI +
Sbjct: 116 VLTITGITVCITS 128


>sp|Q5RBQ9|TM234_PONAB Transmembrane protein 234 OS=Pongo abelii GN=TMEM234 PE=2 SV=1
          Length = 166

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%)

Query: 20  QYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGM 79
           +Y +PFLLN   S  ++  L+ T ++LAVP+ N+     T   G  LGE      ++ GM
Sbjct: 56  EYLMPFLLNQCGSLLYYLTLASTDLTLAVPICNSLAIIFTLIVGKALGEDIGGKRAVAGM 115

Query: 80  ASIVLGVWLCINT 92
              V+G+ LCI +
Sbjct: 116 VLTVIGISLCITS 128


>sp|A7YW81|TM234_BOVIN Transmembrane protein 234 OS=Bos taurus GN=TMEM234 PE=2 SV=1
          Length = 140

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 1   LHQKLFAS--LKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAA 58
           +H++ +A   L+    L +  +Y +PF LN   S  ++  L+ T ++LAVP++N+     
Sbjct: 35  VHERTWARQLLQEMKTLFLNPEYLMPFSLNQCGSLLYYLTLASTDLTLAVPISNSLAIIF 94

Query: 59  TAFFGLLLGERTRVGFSLLGMASIVLGVWLCINT 92
           T   G +LGE      +  GM   V G+ LCI +
Sbjct: 95  TLIVGKVLGEDIGGKRAFAGMVLTVAGITLCITS 128


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.330    0.138    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,787,328
Number of Sequences: 539616
Number of extensions: 832623
Number of successful extensions: 3306
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3297
Number of HSP's gapped (non-prelim): 14
length of query: 92
length of database: 191,569,459
effective HSP length: 62
effective length of query: 30
effective length of database: 158,113,267
effective search space: 4743398010
effective search space used: 4743398010
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)