Query 046747
Match_columns 92
No_of_seqs 102 out of 184
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 04:06:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10639 UPF0546: Uncharacteri 100.0 9E-32 1.9E-36 184.0 9.9 84 7-90 30-113 (113)
2 KOG4831 Unnamed protein [Funct 99.9 6.4E-28 1.4E-32 165.4 8.1 90 2-91 36-125 (125)
3 PRK02971 4-amino-4-deoxy-L-ara 99.4 4.3E-13 9.3E-18 92.9 7.3 78 12-90 40-121 (129)
4 PRK15051 4-amino-4-deoxy-L-ara 99.2 3E-11 6.4E-16 81.4 6.1 70 21-91 40-109 (111)
5 PRK10452 multidrug efflux syst 98.8 1.1E-08 2.4E-13 70.5 6.8 70 20-89 32-101 (120)
6 PF13536 EmrE: Multidrug resis 98.8 2.4E-08 5.2E-13 66.1 7.0 87 3-91 20-106 (113)
7 PRK09541 emrE multidrug efflux 98.7 5.3E-08 1.1E-12 66.0 6.9 69 21-89 33-101 (110)
8 PF00893 Multi_Drug_Res: Small 98.7 8.4E-08 1.8E-12 62.6 6.5 63 20-82 31-93 (93)
9 PRK10650 multidrug efflux syst 98.5 6.1E-07 1.3E-11 61.0 6.3 74 16-89 32-106 (109)
10 COG2076 EmrE Membrane transpor 98.4 7.7E-07 1.7E-11 60.6 6.3 72 17-88 28-100 (106)
11 COG2510 Predicted membrane pro 98.3 1.9E-06 4.1E-11 61.1 6.8 65 25-90 74-138 (140)
12 PRK11431 multidrug efflux syst 98.3 2.6E-06 5.7E-11 57.4 6.9 68 22-89 33-100 (105)
13 PF00892 EamA: EamA-like trans 98.3 8E-07 1.7E-11 56.7 3.6 67 23-90 59-125 (126)
14 PF05653 Mg_trans_NIPA: Magnes 98.2 2E-06 4.4E-11 66.5 5.3 78 12-90 44-121 (300)
15 TIGR03340 phn_DUF6 phosphonate 97.8 8.8E-05 1.9E-09 55.4 6.5 68 22-90 67-134 (281)
16 TIGR00776 RhaT RhaT L-rhamnose 97.6 0.00016 3.4E-09 55.0 5.9 64 28-91 69-136 (290)
17 TIGR03340 phn_DUF6 phosphonate 97.6 0.00023 5.1E-09 53.1 6.5 65 23-88 216-280 (281)
18 PF04142 Nuc_sug_transp: Nucle 97.6 0.00085 1.9E-08 50.5 9.4 73 18-91 17-89 (244)
19 TIGR00950 2A78 Carboxylate/Ami 97.6 0.00029 6.4E-09 50.9 6.5 69 21-90 50-118 (260)
20 COG0697 RhaT Permeases of the 97.4 0.00063 1.4E-08 48.8 6.8 72 19-91 71-143 (292)
21 TIGR00950 2A78 Carboxylate/Ami 97.2 0.0017 3.7E-08 46.9 7.2 63 23-86 197-259 (260)
22 PRK15430 putative chlorampheni 97.1 0.0016 3.6E-08 49.0 6.2 67 23-90 78-144 (296)
23 PRK15430 putative chlorampheni 96.9 0.0023 5E-08 48.3 5.5 63 28-91 223-285 (296)
24 PRK11689 aromatic amino acid e 96.9 0.0031 6.6E-08 47.6 6.0 60 29-89 226-285 (295)
25 TIGR00817 tpt Tpt phosphate/ph 96.8 0.0037 8.1E-08 46.9 6.0 71 19-90 65-136 (302)
26 COG0697 RhaT Permeases of the 96.8 0.005 1.1E-07 44.1 6.1 59 30-89 227-285 (292)
27 TIGR00688 rarD rarD protein. T 96.7 0.0049 1.1E-07 45.1 5.7 65 24-89 76-140 (256)
28 PRK10532 threonine and homoser 96.6 0.0062 1.3E-07 45.8 5.9 67 22-89 213-279 (293)
29 KOG2922 Uncharacterized conser 96.6 0.0028 6.1E-08 50.6 4.0 76 15-91 61-136 (335)
30 PRK11272 putative DMT superfam 96.6 0.007 1.5E-07 45.5 5.9 64 25-89 220-283 (292)
31 PF08449 UAA: UAA transporter 96.4 0.014 3.1E-07 44.2 6.9 71 19-90 65-135 (303)
32 PTZ00343 triose or hexose phos 96.3 0.016 3.4E-07 45.2 6.6 71 19-90 114-185 (350)
33 PRK11453 O-acetylserine/cystei 96.2 0.015 3.3E-07 43.8 5.8 60 29-89 226-285 (299)
34 PLN00411 nodulin MtN21 family 96.1 0.01 2.2E-07 46.9 4.9 60 29-89 267-326 (358)
35 TIGR00776 RhaT RhaT L-rhamnose 96.1 0.018 3.9E-07 43.8 6.0 68 21-90 215-287 (290)
36 PRK11453 O-acetylserine/cystei 95.5 0.056 1.2E-06 40.7 6.3 57 33-90 74-131 (299)
37 PF06027 DUF914: Eukaryotic pr 95.5 0.048 1E-06 43.2 6.2 71 19-90 80-150 (334)
38 PF06800 Sugar_transport: Suga 95.4 0.043 9.3E-07 42.6 5.7 61 30-90 57-121 (269)
39 PRK11689 aromatic amino acid e 95.4 0.09 1.9E-06 39.6 7.2 49 41-90 88-136 (295)
40 PRK11272 putative DMT superfam 95.2 0.072 1.6E-06 40.0 6.2 66 23-90 74-140 (292)
41 PF06800 Sugar_transport: Suga 95.0 0.065 1.4E-06 41.6 5.5 70 18-88 195-268 (269)
42 TIGR00803 nst UDP-galactose tr 94.7 0.036 7.8E-07 39.9 3.3 70 18-88 152-221 (222)
43 TIGR00817 tpt Tpt phosphate/ph 94.2 0.059 1.3E-06 40.4 3.5 56 33-89 236-291 (302)
44 PF05653 Mg_trans_NIPA: Magnes 92.3 1.7 3.8E-05 33.6 9.1 78 14-91 205-292 (300)
45 PLN00411 nodulin MtN21 family 92.2 0.37 7.9E-06 38.2 5.4 56 34-90 94-155 (358)
46 PRK13499 rhamnose-proton sympo 91.9 0.37 8E-06 38.6 5.1 67 24-90 79-152 (345)
47 PF03151 TPT: Triose-phosphate 91.9 1.3 2.8E-05 29.4 7.0 54 34-88 97-150 (153)
48 PTZ00343 triose or hexose phos 91.2 0.74 1.6E-05 35.9 6.0 50 38-88 296-345 (350)
49 KOG2234 Predicted UDP-galactos 89.3 1.9 4.2E-05 34.7 7.0 72 17-89 91-162 (345)
50 PF04657 DUF606: Protein of un 88.0 1.7 3.7E-05 30.1 5.2 71 18-88 64-138 (138)
51 PF08449 UAA: UAA transporter 86.7 7.4 0.00016 29.4 8.5 78 10-88 213-294 (303)
52 PF04142 Nuc_sug_transp: Nucle 83.3 2.7 5.9E-05 31.6 4.7 64 18-82 181-244 (244)
53 PF06027 DUF914: Eukaryotic pr 81.6 7.9 0.00017 30.8 7.0 72 17-89 228-303 (334)
54 PRK13499 rhamnose-proton sympo 81.3 4.2 9E-05 32.6 5.3 54 37-90 277-340 (345)
55 KOG1441 Glucose-6-phosphate/ph 76.5 1.7 3.7E-05 34.4 1.8 73 18-91 82-155 (316)
56 KOG4510 Permease of the drug/m 75.2 3.9 8.3E-05 32.8 3.4 60 29-90 108-168 (346)
57 KOG1580 UDP-galactose transpor 72.9 14 0.00031 29.3 6.0 79 8-88 227-310 (337)
58 KOG2765 Predicted membrane pro 70.6 10 0.00022 31.4 4.9 61 30-91 171-231 (416)
59 PRK02237 hypothetical protein; 68.8 29 0.00063 23.8 6.2 78 11-90 25-104 (109)
60 KOG1583 UDP-N-acetylglucosamin 67.2 7.2 0.00016 31.3 3.3 69 20-88 243-311 (330)
61 KOG3912 Predicted integral mem 66.3 7.7 0.00017 31.4 3.4 69 21-90 89-157 (372)
62 COG2962 RarD Predicted permeas 66.3 54 0.0012 26.1 8.0 76 9-88 59-141 (293)
63 KOG2234 Predicted UDP-galactos 64.0 14 0.00029 30.0 4.4 70 18-88 250-319 (345)
64 KOG1442 GDP-fucose transporter 61.7 4.6 0.0001 32.4 1.4 38 51-88 134-171 (347)
65 COG4975 GlcU Putative glucose 58.4 2.9 6.3E-05 33.0 -0.3 54 37-90 78-135 (288)
66 PRK10532 threonine and homoser 57.8 47 0.001 24.8 6.2 56 28-90 81-136 (293)
67 PF02694 UPF0060: Uncharacteri 57.4 35 0.00076 23.4 4.9 78 11-90 24-102 (107)
68 PF09913 DUF2142: Predicted me 52.6 33 0.00071 26.6 4.7 51 22-84 155-205 (389)
69 KOG1583 UDP-N-acetylglucosamin 51.5 17 0.00038 29.2 3.1 39 52-90 98-136 (330)
70 COG4975 GlcU Putative glucose 47.6 8.2 0.00018 30.5 0.7 70 19-89 210-283 (288)
71 PRK10621 hypothetical protein; 39.5 91 0.002 23.2 5.2 57 30-88 192-250 (266)
72 COG5006 rhtA Threonine/homoser 37.4 1.2E+02 0.0027 24.1 5.8 64 23-87 211-278 (292)
73 PF07857 DUF1632: CEO family ( 34.0 31 0.00067 26.5 2.0 64 26-89 63-132 (254)
74 KOG1580 UDP-galactose transpor 33.8 15 0.00032 29.2 0.2 29 61-89 127-155 (337)
75 TIGR02230 ATPase_gene1 F0F1-AT 33.4 29 0.00063 23.3 1.5 39 43-88 49-87 (100)
76 PF04342 DUF486: Protein of un 33.1 43 0.00094 23.0 2.4 31 58-89 76-106 (108)
77 PF06379 RhaT: L-rhamnose-prot 32.7 40 0.00087 27.3 2.5 65 26-90 81-152 (344)
78 PF14809 TGT_C1: C1 domain of 31.8 8.8 0.00019 24.2 -1.1 10 44-53 51-60 (70)
79 PF01810 LysE: LysE type trans 31.2 1.3E+02 0.0029 20.7 4.7 18 73-90 172-189 (191)
80 PF04474 DUF554: Protein of un 30.5 85 0.0018 23.9 3.8 40 49-88 4-48 (226)
81 PRK04164 hypothetical protein; 30.2 1.5E+02 0.0032 21.5 4.9 58 13-72 29-86 (181)
82 TIGR01528 NMN_trans_PnuC nicot 30.1 1.8E+02 0.0039 20.9 5.3 51 25-77 94-145 (189)
83 KOG4349 Uncharacterized conser 29.7 1.5E+02 0.0032 21.2 4.6 55 2-57 35-91 (143)
84 COG3238 Uncharacterized protei 29.6 47 0.001 23.8 2.2 23 66-88 119-143 (150)
85 PF09771 Tmemb_18A: Transmembr 27.9 1.7E+02 0.0036 20.5 4.6 59 3-63 14-76 (125)
86 KOG2922 Uncharacterized conser 25.6 3.7E+02 0.008 21.9 6.9 71 18-89 223-304 (335)
87 PF13273 DUF4064: Protein of u 25.3 71 0.0015 20.3 2.3 17 73-89 82-98 (100)
88 PRK13871 conjugal transfer pro 24.2 1.1E+02 0.0023 21.8 3.2 49 34-82 36-87 (135)
89 COG2246 Predicted membrane pro 23.9 2.5E+02 0.0054 19.3 5.1 32 36-68 31-62 (139)
90 PF06379 RhaT: L-rhamnose-prot 23.7 3.2E+02 0.007 22.2 6.1 65 25-89 259-338 (344)
91 KOG1443 Predicted integral mem 23.1 83 0.0018 25.6 2.7 51 40-91 106-156 (349)
92 KOG2765 Predicted membrane pro 22.8 2.3E+02 0.0049 23.7 5.2 42 40-89 347-388 (416)
93 PF04018 DUF368: Domain of unk 22.4 3.7E+02 0.0079 20.7 7.6 51 18-70 53-105 (257)
94 PF07168 Ureide_permease: Urei 20.7 8 0.00017 31.2 -3.4 66 23-88 77-143 (336)
95 KOG1623 Multitransmembrane pro 20.6 4E+02 0.0088 20.5 5.9 42 22-65 162-203 (243)
96 PF04138 GtrA: GtrA-like prote 20.5 92 0.002 19.7 2.1 25 44-68 24-48 (117)
97 PF02683 DsbD: Cytochrome C bi 20.2 85 0.0018 22.4 2.1 23 67-89 188-210 (211)
No 1
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=99.97 E-value=9e-32 Score=184.04 Aligned_cols=84 Identities=44% Similarity=0.644 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhh
Q 046747 7 ASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGV 86 (92)
Q Consensus 7 ~~~~~~~~ll~n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv 86 (92)
+..+++..+++||+|++||++||+||++|+++|+++|+|+|||++||++|++|+++|+++|||..++++++|++||+.|+
T Consensus 30 ~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv 109 (113)
T PF10639_consen 30 QLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGV 109 (113)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCe
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeee
Q 046747 87 WLCI 90 (92)
Q Consensus 87 ~L~~ 90 (92)
.+|+
T Consensus 110 ~Lcv 113 (113)
T PF10639_consen 110 ALCV 113 (113)
T ss_pred eeeC
Confidence 9996
No 2
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=99.95 E-value=6.4e-28 Score=165.37 Aligned_cols=90 Identities=50% Similarity=0.890 Sum_probs=86.4
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHH
Q 046747 2 HQKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMAS 81 (92)
Q Consensus 2 ~~~~~~~~~~~~~ll~n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~L 81 (92)
++|..+.++++..++.||+|++||++|||||.+||.+|+++|+|+|+|++||++|+||++.|+.+|||....+.++|+.+
T Consensus 36 ~~k~~~~lqe~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~l 115 (125)
T KOG4831|consen 36 SRKIMIALQEMKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSL 115 (125)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhH
Confidence 36777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhheeeec
Q 046747 82 IVLGVWLCIN 91 (92)
Q Consensus 82 I~~Gv~L~~~ 91 (92)
|+.|+.||+.
T Consensus 116 iv~Gi~Lci~ 125 (125)
T KOG4831|consen 116 IVFGIWLCIL 125 (125)
T ss_pred HhhhhhheeC
Confidence 9999999974
No 3
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.43 E-value=4.3e-13 Score=92.88 Aligned_cols=78 Identities=23% Similarity=0.230 Sum_probs=69.0
Q ss_pred HHHHHhhH--HHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHH--hhhccccchhhHHHHHhhhhhe
Q 046747 12 WLALLVIW--QYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLL--LGERTRVGFSLLGMASIVLGVW 87 (92)
Q Consensus 12 ~~~ll~n~--~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~--l~e~~~~~~~~~G~~LI~~Gv~ 87 (92)
....+.|| ++..++.++.++.++|.+.++|.|+|.|||+. |+.|+++.++++. +.+|..++++++|+++|++|+.
T Consensus 40 ~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~-sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~ 118 (129)
T PRK02971 40 ALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLL-SLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVW 118 (129)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH-HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 45567888 99999999999999999999999999999995 9999999998874 5666668888999999999998
Q ss_pred eee
Q 046747 88 LCI 90 (92)
Q Consensus 88 L~~ 90 (92)
+..
T Consensus 119 lv~ 121 (129)
T PRK02971 119 LIN 121 (129)
T ss_pred Hhc
Confidence 754
No 4
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=99.22 E-value=3e-11 Score=81.37 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeeec
Q 046747 21 YTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCIN 91 (92)
Q Consensus 21 ~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~~ 91 (92)
+...+..+..+..+|.+.+++.|+|.|||+. +++++.+++.|+++++|..++++++|+++|+.|+.++..
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~-~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPML-SLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3444577899999999999999999999996 799999999999988888888999999999999987654
No 5
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.85 E-value=1.1e-08 Score=70.52 Aligned_cols=70 Identities=11% Similarity=0.192 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747 20 QYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 20 ~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~ 89 (92)
+.+..+.++.++-.+|...+++.|+|.|||+--+++++.+++.|+++++|..++.+++|+.+|+.|+.+.
T Consensus 32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l 101 (120)
T PRK10452 32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 4678889999999999999999999999999778999999999999888888999999999999999653
No 6
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.80 E-value=2.4e-08 Score=66.08 Aligned_cols=87 Identities=21% Similarity=0.163 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHh
Q 046747 3 QKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASI 82 (92)
Q Consensus 3 ~~~~~~~~~~~~ll~n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI 82 (92)
+|..+..+...+--..|..+.+.+.+..+...|++.++..| +.++|+. +++.+++++.++.+.+|..+++++.|++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~-~~~pi~~~ll~~~~~~er~~~~~~~a~~l~ 97 (113)
T PF13536_consen 20 GRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIF-SLSPIFTALLSWLFFKERLSPRRWLAILLI 97 (113)
T ss_pred ccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHH-HHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44444444333311223344567777789999999999999 7888886 899999999999877778888999999999
Q ss_pred hhhheeeec
Q 046747 83 VLGVWLCIN 91 (92)
Q Consensus 83 ~~Gv~L~~~ 91 (92)
++|+.++..
T Consensus 98 ~~Gv~li~~ 106 (113)
T PF13536_consen 98 LIGVILIAW 106 (113)
T ss_pred HHHHHHHhh
Confidence 999987653
No 7
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=98.72 E-value=5.3e-08 Score=66.01 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747 21 YTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 21 ~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~ 89 (92)
.+..+..+.++-.++...+++.|+|.|||+--+++.+.+++.|+++++|..++.+++|+.+|++|+.+.
T Consensus 33 ~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l 101 (110)
T PRK09541 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVI 101 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 356778888888888999999999999999778999999999999888888989999999999998753
No 8
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=98.67 E-value=8.4e-08 Score=62.59 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHh
Q 046747 20 QYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASI 82 (92)
Q Consensus 20 ~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI 82 (92)
..+.....|..+-.++...+++.|+|.|||+-.+++.+.+.+.|.++++|..++.+++|+.+|
T Consensus 31 ~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 31 PTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp ---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 344455678888889999999999999999988899999999999888888788889999986
No 9
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=98.46 E-value=6.1e-07 Score=60.96 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=58.9
Q ss_pred HhhHHHH-HHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747 16 LVIWQYT-VPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 16 l~n~~~~-~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~ 89 (92)
+++|... .-...+..+-.+.-..+++-|++.|||+=-+++.+.+++.|+++++|..++.+++|+.+|+.|+.+.
T Consensus 32 f~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 32 FRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3455433 3344444455555588999999999999988999999999999888888999999999999999753
No 10
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=98.43 E-value=7.7e-07 Score=60.58 Aligned_cols=72 Identities=22% Similarity=0.221 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHHHHHH-HHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhhee
Q 046747 17 VIWQYTVPFLLNLSASATF-FAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWL 88 (92)
Q Consensus 17 ~n~~~~~p~~ln~~gS~~~-~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L 88 (92)
++++..+-.++..+.|..+ -..+++.|++.||++=-..+-+.|++.|+++++|..+..+++|+.+|++|+..
T Consensus 28 ~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~ 100 (106)
T COG2076 28 TRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIG 100 (106)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHH
Confidence 3444444444444455444 48999999999999999999999999999988888788889999999999864
No 11
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.34 E-value=1.9e-06 Score=61.08 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747 25 FLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 25 ~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~ 90 (92)
.+.-..+..+||+.|++-+-|..+|+ .+++-+++++.++++-+|..+.++|+|++||.+|+.+..
T Consensus 74 Gla~glswl~Yf~ALk~G~as~VvPl-dk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 74 GLAGGLSWLLYFRALKKGKASRVVPL-DKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHHHHhcCCcceEEEc-ccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 35667788999999999999999999 599999999999885555557788999999999998864
No 12
>PRK11431 multidrug efflux system protein; Provisional
Probab=98.33 E-value=2.6e-06 Score=57.40 Aligned_cols=68 Identities=19% Similarity=0.168 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747 22 TVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 22 ~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~ 89 (92)
+.-...+.++-.+.-..+++.|++.||++=-.++-+.+++.|+++++|..++.+++|+.+|+.|+...
T Consensus 33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 34456666666677789999999999999988999999999999888888889999999999998753
No 13
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.29 E-value=8e-07 Score=56.73 Aligned_cols=67 Identities=19% Similarity=0.187 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747 23 VPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 23 ~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~ 90 (92)
.+.+.+..+..+|++.+++.|.+.+.++ +.+.=+++++.++.+.+|..++++++|+++++.|+.+..
T Consensus 59 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 59 LGLLGTALAYLLYFYALKYISASIVSIL-QYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hhccceehHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4444578899999999999999999999 489999999999998888889999999999999998754
No 14
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.23 E-value=2e-06 Score=66.48 Aligned_cols=78 Identities=22% Similarity=0.245 Sum_probs=69.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747 12 WLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 12 ~~~ll~n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~ 90 (92)
-...++||..+.|++++..|.+.-+..++-+|.|+.-|+ .+++.+++++.+.++-+|+..++.+.|+.+++.|+.+++
T Consensus 44 ~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Pl-g~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 44 GRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVAPL-GALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred hhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHH-HhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 457899999999999999999999999999999999999 699999999999764445556677999999999999876
No 15
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.76 E-value=8.8e-05 Score=55.35 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747 22 TVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 22 ~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~ 90 (92)
......+......+++.+++.|.+.+.|+ +..+=+++++.++++.+|..++++|+|+++++.|+.+..
T Consensus 67 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l-~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~ 134 (281)
T TIGR03340 67 AISAVANMVYFLGLAQAYHHADVGLVYPL-ARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG 134 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhhhhH-HhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 34445566777778889999999999999 477888999999887777788899999999999998653
No 16
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.61 E-value=0.00016 Score=54.99 Aligned_cols=64 Identities=17% Similarity=0.320 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchh----hHHHHHhhhhheeeec
Q 046747 28 NLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFS----LLGMASIVLGVWLCIN 91 (92)
Q Consensus 28 n~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~----~~G~~LI~~Gv~L~~~ 91 (92)
...|-+.|+...++..+|.|+|+.+.++++++.+.+.++.+|...+++ ++|++++++|+.++..
T Consensus 69 w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~ 136 (290)
T TIGR00776 69 WALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSR 136 (290)
T ss_pred HHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEe
Confidence 566668889999999999999999889999999999876656556677 8999999999998753
No 17
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.59 E-value=0.00023 Score=53.07 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhhee
Q 046747 23 VPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWL 88 (92)
Q Consensus 23 ~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L 88 (92)
.+...-..+-.+|++.+++.|.+.+.|.. .+.=+++.+.|+++.+|..+..+++|.++|+.|+.+
T Consensus 216 ~~~~~s~l~~~l~~~al~~~~a~~~~~~~-~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 216 LGGLMIGGAYALVLWAMTRLPVATVVALR-NTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHhhCCceEEEeec-ccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 33444556677899999999999999995 778899999998876666677889999999999975
No 18
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.58 E-value=0.00085 Score=50.46 Aligned_cols=73 Identities=27% Similarity=0.238 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeeec
Q 046747 18 IWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCIN 91 (92)
Q Consensus 18 n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~~ 91 (92)
.+++.+|-++|.....+.++.++..|-+ .|=+.+.+--++|++..+++.++..++++|+++.+.++|+.++..
T Consensus 17 ~~~~~vPA~lY~~qn~L~~~al~~ld~~-t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~ 89 (244)
T PF04142_consen 17 TLKLAVPALLYAIQNNLQFVALSYLDPS-TFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQL 89 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHH-HHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeec
Confidence 5789999999999999999999999966 677778999999999999888888788999999999999998653
No 19
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.56 E-value=0.00029 Score=50.92 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747 21 YTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 21 ~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~ 90 (92)
...+.+........+++.+++.|.+.+.++ +++.=+++++.++++.+|+.++++++|+++.++|+.++.
T Consensus 50 ~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii-~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~ 118 (260)
T TIGR00950 50 LLLGALQIGVFYVLYFVAVKRLPVGEAALL-LYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLL 118 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhHHH-HhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhc
Confidence 445555556777888999999999999888 588888899989887777888899999999999998764
No 20
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.44 E-value=0.00063 Score=48.78 Aligned_cols=72 Identities=21% Similarity=0.127 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHH-HhhhccccchhhHHHHHhhhhheeeec
Q 046747 19 WQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGL-LLGERTRVGFSLLGMASIVLGVWLCIN 91 (92)
Q Consensus 19 ~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~-~l~e~~~~~~~~~G~~LI~~Gv~L~~~ 91 (92)
+....+......+...|++.+++.+.+.+.++ ++++-+++.+.++ ++.+|..+++++.|..+...|+.+...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~ 143 (292)
T COG0697 71 LLLLLALLGLALPFLLLFLALKYTSASVASLI-IGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILL 143 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheec
Confidence 56778888888889999999999999999999 5999999999996 665666688889999999999988653
No 21
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.23 E-value=0.0017 Score=46.90 Aligned_cols=63 Identities=21% Similarity=0.074 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhh
Q 046747 23 VPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGV 86 (92)
Q Consensus 23 ~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv 86 (92)
.+......+..+|++.+++.+.+.+-.+ +.+.=+++++.++++.+|+.+.++++|.++++.|+
T Consensus 197 ~~~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 197 LGLIGTALAYFLWNKGLTLVDPSAASIL-ALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 4444567788899999999999999999 58999999999988777777888899999999997
No 22
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.11 E-value=0.0016 Score=49.05 Aligned_cols=67 Identities=12% Similarity=0.035 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747 23 VPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 23 ~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~ 90 (92)
.+..........|++.+.+.+.+.|.-+ +.++=+++++.++++.+|..++++|+|+++.++|+.+..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l-~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLG-YFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHH-HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 4455566778899999999999999988 688889999999887777788999999999999998754
No 23
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.91 E-value=0.0023 Score=48.26 Aligned_cols=63 Identities=8% Similarity=-0.060 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeeec
Q 046747 28 NLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCIN 91 (92)
Q Consensus 28 n~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~~ 91 (92)
-..+-.+|++.+++.|-+.+-|+. -+.=+++.+.|+++.+|.++...++|+++|++|+.+...
T Consensus 223 t~i~~~~~~~a~~~~~a~~~s~~~-~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 223 TTVPLLCFTAAATRLRLSTLGFFQ-YIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 335667889999999999999994 899999999999877777788999999999988876543
No 24
>PRK11689 aromatic amino acid exporter; Provisional
Probab=96.88 E-value=0.0031 Score=47.56 Aligned_cols=60 Identities=20% Similarity=0.107 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747 29 LSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 29 ~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~ 89 (92)
..+-.+|++.+++.|-+.+-++. .+.=+++++.|+++.+|..+...++|+++|+.|+.++
T Consensus 226 ~~~~~l~~~al~~~~a~~~s~~~-~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~ 285 (295)
T PRK11689 226 GFGYAAWNVGILHGNMTLLATAS-YFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC 285 (295)
T ss_pred HHHHHHHHHHHHccCHHHHHHHH-HhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence 33456789999999999999995 8888999999988666666778899999999999765
No 25
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=96.82 E-value=0.0037 Score=46.88 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=56.7
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747 19 WQYTVPFLL-NLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 19 ~~~~~p~~l-n~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~ 90 (92)
++.+.|..+ +.....++++.+...+.|.+--+ .+++=+++++.++++.+|..++++++|++++++|+.+..
T Consensus 65 ~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li-~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 65 LKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTI-KAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 344444433 34555678899999999999877 599999999999988888888899999999999998653
No 26
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.77 E-value=0.005 Score=44.07 Aligned_cols=59 Identities=29% Similarity=0.278 Sum_probs=51.6
Q ss_pred HHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747 30 SASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 30 ~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~ 89 (92)
.+-.+|++.+++.+.+.+.|+. .+.-+++++.++++.+|.++.++++|..+|+.|+.+.
T Consensus 227 i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~ 285 (292)
T COG0697 227 LAYLLWYYALRLLGASLVALLS-LLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLA 285 (292)
T ss_pred HHHHHHHHHHHhcCchHHHHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999994 7888888888988777777888899999999998764
No 27
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=96.69 E-value=0.0049 Score=45.13 Aligned_cols=65 Identities=12% Similarity=-0.071 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747 24 PFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 24 p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~ 89 (92)
...+.......|++.+++.+.+.|--+. .++=+++++.++++.+|+.++++|+|+++.++|+.+.
T Consensus 76 ~g~~~~~~~~~~~~a~~~~~~~~a~~l~-~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li 140 (256)
T TIGR00688 76 CGLLIGFNWWLFIWAVNNGSSLEVSLGY-LINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN 140 (256)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHHHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 3334556678999999999999888885 6677788888888777888889999999999999765
No 28
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=96.61 E-value=0.0062 Score=45.84 Aligned_cols=67 Identities=15% Similarity=0.090 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747 22 TVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 22 ~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~ 89 (92)
..+......+-.+|++.++|.+-+.+-++. .+.=+++++.|+++.+|..+..+++|.++|+.|+.+.
T Consensus 213 ~lgv~~t~~~~~l~~~~~~~~~a~~as~~~-~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~ 279 (293)
T PRK10532 213 AVAILSTALPYSLEMIALTRLPTRTFGTLM-SMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGS 279 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhHHHHHH-HhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 455555667777999999999999999994 9999999999988666667778899999999998653
No 29
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.0028 Score=50.57 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=68.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeeec
Q 046747 15 LLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCIN 91 (92)
Q Consensus 15 ll~n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~~ 91 (92)
.+..|..++|.+....|=+.-|..-+=+|-|+..|+- +++.+++++.+..+-||+....-.+|+.+.++|-.+++.
T Consensus 61 yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLG-Alsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 61 YLKEPLWWAGMLTMIVGEIANFAAYAFAPASLVTPLG-ALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred hhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhhccch-hHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 4577999999999999999999999999999999995 999999999998877777777889999999999998764
No 30
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=96.57 E-value=0.007 Score=45.46 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747 25 FLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 25 ~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~ 89 (92)
......+-.+|++.+++.+-+.+-++ ..+.=+++++.++++.+|..+..+++|.++|+.|+.+.
T Consensus 220 i~~s~~~~~l~~~~~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~ 283 (292)
T PRK11272 220 VFGSIIAISAYMYLLRNVRPALATSY-AYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLV 283 (292)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 33445566789999999999999999 48888999999988777777888899999999999764
No 31
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.42 E-value=0.014 Score=44.15 Aligned_cols=71 Identities=17% Similarity=0.153 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747 19 WQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 19 ~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~ 90 (92)
++|...-.+|..++.+-...|+..|.+.-.=+ .|..-+.+++.++++.++..+++++++++++++|+.+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~-ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~ 135 (303)
T PF08449_consen 65 KKYAILSFLFFLASVLSNAALKYISYPTQIVF-KSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFT 135 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH-hhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheee
Confidence 45777778999999999999999888765555 799999999999988888888899999999999998865
No 32
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=96.30 E-value=0.016 Score=45.24 Aligned_cols=71 Identities=20% Similarity=0.111 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747 19 WQYTVPFLLNLSA-SATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 19 ~~~~~p~~ln~~g-S~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~ 90 (92)
++-++|..+-+.+ -..-+..++..+.|.+.=+ .+++=+++++.++++.+|..++++++|+++++.|+.+++
T Consensus 114 ~~~llp~gl~~~~~~~~~~~sl~~~svs~~~ii-ka~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 114 LKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVV-KAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH-HHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 4456676665543 2223478899999998888 599999999999988888889899999999999999876
No 33
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=96.18 E-value=0.015 Score=43.76 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747 29 LSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 29 ~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~ 89 (92)
..+-.+|+..++|.+-+.+-++. .+.=+++++.|+++.+|..+...++|.++|+.|+.+.
T Consensus 226 ~~~~~l~~~~l~~~~a~~~s~~~-~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~ 285 (299)
T PRK11453 226 IVGYGIWGTLLGRYETWRVAPLS-LLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN 285 (299)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 44556888899999988888885 7888889999988666666778899999999999864
No 34
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=96.15 E-value=0.01 Score=46.93 Aligned_cols=60 Identities=12% Similarity=0.032 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747 29 LSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 29 ~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~ 89 (92)
..+-.+|++.+++.+-+.+-+. .-+.=+++++.|+++.+|..++..++|.++|+.|+.+.
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~-~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~ 326 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIF-KPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAV 326 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHH-HhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 3466678899999999999999 48999999999988555566778899999999999874
No 35
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=96.12 E-value=0.018 Score=43.77 Aligned_cols=68 Identities=6% Similarity=0.074 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHhc-cCCceeehhhHHHHHHHHHHHHHHHhhhccccchhh----HHHHHhhhhheeee
Q 046747 21 YTVPFLLNLSASATFFAILS-HTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSL----LGMASIVLGVWLCI 90 (92)
Q Consensus 21 ~~~p~~ln~~gS~~~~~~L~-~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~----~G~~LI~~Gv~L~~ 90 (92)
.+.+.. ...+-..|+..++ +.+.+.++++. .+.=+.+.+.+.++.+|..+++.+ +|+++|+.|+.+..
T Consensus 215 ~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls-~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 215 ILPGLM-WGIGNFFYLFSAQPKVGVATSFSLS-QLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHH-HHHHHHHHHHHcccccchhhHHHHH-HHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 334444 6777788888889 99999999997 777777777787644444455668 99999999998764
No 36
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=95.47 E-value=0.056 Score=40.71 Aligned_cols=57 Identities=26% Similarity=0.294 Sum_probs=43.2
Q ss_pred HHHHHHhcc-CCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747 33 ATFFAILSH-TPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 33 ~~~~~~L~~-~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~ 90 (92)
..++..+.. .+.+.|.-+ +++.=+++.+.++++.+|+.++++++|+++.++|+.++.
T Consensus 74 ~~~~~~~~~~~~a~~a~~l-~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~ 131 (299)
T PRK11453 74 AFLFCAINFGMPAGLASLV-LQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI 131 (299)
T ss_pred HHHHHHHHhcCCHHHHHHH-HHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence 344555554 466777666 466667888889887778888899999999999998765
No 37
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=95.46 E-value=0.048 Score=43.21 Aligned_cols=71 Identities=20% Similarity=0.349 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747 19 WQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 19 ~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~ 90 (92)
|+|+..-++...|--+....++.+.+|-+-=+ ++.+-+++++.++.+.++.-.+.+++|+++.+.|+.+.+
T Consensus 80 w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL-~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~ 150 (334)
T PF06027_consen 80 WKYFLLALLDVEANYLVVLAYQYTSVTSVQLL-DCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVV 150 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHhHHHhh-hhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhee
Confidence 56888888999999999999999999887766 899999999999987777778888999999999988754
No 38
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=95.44 E-value=0.043 Score=42.56 Aligned_cols=61 Identities=23% Similarity=0.415 Sum_probs=47.6
Q ss_pred HHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHH-hhhccccchhh---HHHHHhhhhheeee
Q 046747 30 SASATFFAILSHTPISLAVPVTNATTFAATAFFGLL-LGERTRVGFSL---LGMASIVLGVWLCI 90 (92)
Q Consensus 30 ~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~-l~e~~~~~~~~---~G~~LI~~Gv~L~~ 90 (92)
.|-+.-+...++.-+|.+.|+.+.+..+.|.+.|.+ +||=....... +++++|++|+.++.
T Consensus 57 iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 57 IGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 344444678899999999999999999999999976 77766444433 46789999998865
No 39
>PRK11689 aromatic amino acid exporter; Provisional
Probab=95.40 E-value=0.09 Score=39.60 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=39.4
Q ss_pred cCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747 41 HTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 41 ~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~ 90 (92)
..+-+.+- +.++++=+++++.++++.+|+.++++++|+++-.+|+.++.
T Consensus 88 ~~~a~~a~-~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~ 136 (295)
T PRK11689 88 RRQAIEVG-MVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVL 136 (295)
T ss_pred cccchHHH-HHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhee
Confidence 44545554 34788888999999887788889999999999999998875
No 40
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=95.23 E-value=0.072 Score=39.99 Aligned_cols=66 Identities=23% Similarity=0.179 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHh-ccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747 23 VPFLLNLSASATFFAIL-SHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 23 ~p~~ln~~gS~~~~~~L-~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~ 90 (92)
.+.+....+..++++.. .+.+.+.+.-+ ++++=+++++.++++ +|+.++++++|+++.++|+.+..
T Consensus 74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l-~~~~Pl~~~lla~~~-~e~~~~~~~~~~~la~~Gv~ll~ 140 (292)
T PRK11272 74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVV-VATVPLFTLCFSRLF-GIRTRKLEWLGIAIGLAGIVLLN 140 (292)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHH-HHHHHHHHHHHHHHh-cccCchhHHHHHHHHHHhHHHHh
Confidence 33333334556666777 88888888777 588888888888765 56778888999999999987753
No 41
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=95.02 E-value=0.065 Score=41.58 Aligned_cols=70 Identities=17% Similarity=0.324 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHH-hhhccccc---hhhHHHHHhhhhhee
Q 046747 18 IWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLL-LGERTRVG---FSLLGMASIVLGVWL 88 (92)
Q Consensus 18 n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~-l~e~~~~~---~~~~G~~LI~~Gv~L 88 (92)
.|+-+.+-++...|.+.+++.-++.-+..+||+. =++-+...+-|.+ ++|++..+ ..++|++||++|..+
T Consensus 195 ~~~nil~G~~w~ignl~~~is~~~~G~a~af~lS-Q~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 195 SWKNILTGLIWGIGNLFYLISAQKNGVATAFTLS-QLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred hHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHH-hHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 4666888899999999999999999999999997 5678888888876 77766433 357899999998764
No 42
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.71 E-value=0.036 Score=39.94 Aligned_cols=70 Identities=13% Similarity=0.071 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhhee
Q 046747 18 IWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWL 88 (92)
Q Consensus 18 n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L 88 (92)
++..+...+++..+.++-.+++++.|-. ..=++.++.=+++.+.+.+++++..+...++|..+++.|+++
T Consensus 152 ~~~~~~~~~~~a~~~~~v~~vlk~~~~~-~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 152 PTAVWIVGLLNVGGGLCIGGVVRYADNT-TKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred chHHHHHHHHHHhcCceeeehhHHhHHH-HHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 4556667777778888888888888876 555567888899999998888888888999999999999875
No 43
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=94.18 E-value=0.059 Score=40.39 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=43.0
Q ss_pred HHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747 33 ATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 33 ~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~ 89 (92)
..|++.+++.+-+.+--. +.+-=+++++.|+++.+|..+...++|.++++.|+.+.
T Consensus 236 ~~~~~~l~~~sa~t~sv~-~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~ 291 (302)
T TIGR00817 236 QVAFMLLGRVSPLTHSVG-NCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLY 291 (302)
T ss_pred HHHHHHHccCCchHHHHH-hhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHH
Confidence 345578888887777666 46777888888887555566778899999999999763
No 44
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=92.32 E-value=1.7 Score=33.64 Aligned_cols=78 Identities=18% Similarity=0.110 Sum_probs=51.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH----HHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccc------hhhHHHHHhh
Q 046747 14 ALLVIWQYTVPFLLNLSASATFF----AILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVG------FSLLGMASIV 83 (92)
Q Consensus 14 ~ll~n~~~~~p~~ln~~gS~~~~----~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~------~~~~G~~LI~ 83 (92)
+.+.+|....=+++-....+... -.|++.|-++.+|+.+..-=.++.+.|..+.+|.... .-..|+..++
T Consensus 205 ~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii 284 (300)
T PF05653_consen 205 NQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIII 284 (300)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 34566665555544444555444 4678999999999975554455555666666666432 3367899999
Q ss_pred hhheeeec
Q 046747 84 LGVWLCIN 91 (92)
Q Consensus 84 ~Gv~L~~~ 91 (92)
.||++...
T Consensus 285 ~GV~lL~~ 292 (300)
T PF05653_consen 285 IGVFLLSS 292 (300)
T ss_pred Hhhheeec
Confidence 99998753
No 45
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=92.25 E-value=0.37 Score=38.16 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=47.4
Q ss_pred HHHHHhccCCceeehhhHHHHHHHHHHHHHHHh------hhccccchhhHHHHHhhhhheeee
Q 046747 34 TFFAILSHTPISLAVPVTNATTFAATAFFGLLL------GERTRVGFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 34 ~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l------~e~~~~~~~~~G~~LI~~Gv~L~~ 90 (92)
++++.++..+-+.|-=+ +++.=+++++.++++ .+|..++++++|+++-++|+.++.
T Consensus 94 ~~~~gl~~tsa~~asll-~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~ 155 (358)
T PLN00411 94 TGYIGIEYSNPTLASAI-SNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVI 155 (358)
T ss_pred HHHHHHhhccHHHHHHH-HHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHH
Confidence 57788999999999988 588888999988877 467778899999999999987653
No 46
>PRK13499 rhamnose-proton symporter; Provisional
Probab=91.90 E-value=0.37 Score=38.55 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccc-------cchhhHHHHHhhhhheeee
Q 046747 24 PFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTR-------VGFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 24 p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~-------~~~~~~G~~LI~~Gv~L~~ 90 (92)
.-++-..|-+.++...+..-+|++.|+...++-+++.+.+.++..|-. ..-..+|++++++|+.++.
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s 152 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVG 152 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 344556778888899999999999999999999999999876433211 1346889999999998864
No 47
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=91.85 E-value=1.3 Score=29.43 Aligned_cols=54 Identities=15% Similarity=0.275 Sum_probs=39.8
Q ss_pred HHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhhee
Q 046747 34 TFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWL 88 (92)
Q Consensus 34 ~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L 88 (92)
.-+..+++.. ++++=++|.+-=+++.+.++.+++|..+.++++|+++.+.|+.+
T Consensus 97 ~~f~~i~~tS-~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 97 SSFLLIKLTS-PLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHhhhcC-hhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 3345555543 23555667888888999998866666788899999999999875
No 48
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=91.21 E-value=0.74 Score=35.92 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=37.0
Q ss_pred HhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhhee
Q 046747 38 ILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWL 88 (92)
Q Consensus 38 ~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L 88 (92)
.+++.+-..+ =++|.+-=+++.+.|+++.+|..+...++|.++++.|+.+
T Consensus 296 ~l~~~s~~t~-sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l 345 (350)
T PTZ00343 296 CLGKVNQVTH-AVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL 345 (350)
T ss_pred HHhccchhHH-HHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence 5666643333 3446777788899998766666777889999999999975
No 49
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=89.32 E-value=1.9 Score=34.74 Aligned_cols=72 Identities=21% Similarity=0.255 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747 17 VIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 17 ~n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~ 89 (92)
-+.+..+|-++|.+==-+.|..+++-| ...|-++.=+--..|++...++-+++.++++|....+-++|+.+.
T Consensus 91 ~~lk~~vPa~iYalqNnl~yval~~ld-aatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~v 162 (345)
T KOG2234|consen 91 ETLKVSVPALIYALQNNLQYVALSNLD-AATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALV 162 (345)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhcCC-chhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 366899999999888889999999999 444555567888889998887666666878899999999999764
No 50
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=87.97 E-value=1.7 Score=30.10 Aligned_cols=71 Identities=18% Similarity=0.202 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHH--hhhcc--ccchhhHHHHHhhhhhee
Q 046747 18 IWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLL--LGERT--RVGFSLLGMASIVLGVWL 88 (92)
Q Consensus 18 n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~--l~e~~--~~~~~~~G~~LI~~Gv~L 88 (92)
+||+..|-++=..--..-.+..+|...+.+.=..-.=--+..++...+ ++.++ .+++|.+|.+++++|+.|
T Consensus 64 p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 64 PWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred ChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 566666665444444444455555444443333211122233333332 44344 567999999999999875
No 51
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=86.68 E-value=7.4 Score=29.37 Aligned_cols=78 Identities=9% Similarity=0.120 Sum_probs=52.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHH----HHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhh
Q 046747 10 KNWLALLVIWQYTVPFLLNLS----ASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLG 85 (92)
Q Consensus 10 ~~~~~ll~n~~~~~p~~ln~~----gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~G 85 (92)
+.+-.....|..+...++|-+ |....++..++.+ ++..-++.++-=+++.+.+.+++.+..++..|.|.++++.|
T Consensus 213 ~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~-al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g 291 (303)
T PF08449_consen 213 SAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFS-ALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAG 291 (303)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHH
Confidence 344445566766666655544 3334445554443 44444556888889999887766666777889999999999
Q ss_pred hee
Q 046747 86 VWL 88 (92)
Q Consensus 86 v~L 88 (92)
+.+
T Consensus 292 ~~~ 294 (303)
T PF08449_consen 292 IFL 294 (303)
T ss_pred HHH
Confidence 864
No 52
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=83.30 E-value=2.7 Score=31.56 Aligned_cols=64 Identities=19% Similarity=0.153 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHh
Q 046747 18 IWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASI 82 (92)
Q Consensus 18 n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI 82 (92)
|++.+++..++..|-++--+++++.| ++.==++++++-++|++.++.+++..++....+|..++
T Consensus 181 ~~~~~~~i~~~a~gGllva~v~Kyad-nI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 181 SWWVWIVIFLQAIGGLLVAFVLKYAD-NIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 67788888888889888888998888 45666778999999999999888888888878887653
No 53
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=81.59 E-value=7.9 Score=30.75 Aligned_cols=72 Identities=11% Similarity=0.017 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH----HHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747 17 VIWQYTVPFLLNLSASATFF----AILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 17 ~n~~~~~p~~ln~~gS~~~~----~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~ 89 (92)
-+++....++.|..+...++ +.+..++= ..+-+...++-..+++.+.+++++..++..++|.++|++|..+-
T Consensus 228 w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssA-t~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy 303 (334)
T PF06027_consen 228 WTSQVIGLLVGYALCLFLFYSLVPIVLRMSSA-TFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVY 303 (334)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhCcc-ceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheE
Confidence 36666666666666655554 22322222 22333446677778888888777777888899999999999874
No 54
>PRK13499 rhamnose-proton symporter; Provisional
Probab=81.26 E-value=4.2 Score=32.60 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=38.3
Q ss_pred HHhccCCceeehh-----hHHHHHHHHHHHHHHHhhhcccc-----chhhHHHHHhhhhheeee
Q 046747 37 AILSHTPISLAVP-----VTNATTFAATAFFGLLLGERTRV-----GFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 37 ~~L~~~dlSla~P-----~~nsl~fv~t~l~~~~l~e~~~~-----~~~~~G~~LI~~Gv~L~~ 90 (92)
|.+++..+..+.| +.|+++-++..+-|.+++|.+.. ...++|+++++.|..++.
T Consensus 277 y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~lkE~K~a~~k~~~~l~~G~vliI~g~~lig 340 (345)
T PRK13499 277 YAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLVLKEWKGASRRPVRVLSLGCVVIILAANIVG 340 (345)
T ss_pred HHHHHHHcCCccchHHHHHhccHHHHHHHHhhhhhhhccCCCccchhHHHHHHHHHHHHHHHHh
Confidence 5555555544444 66778878888888889998852 234889999999987653
No 55
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=76.51 E-value=1.7 Score=34.40 Aligned_cols=73 Identities=23% Similarity=0.250 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeeec
Q 046747 18 IWQYTVPFLLNLSASATFF-AILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCIN 91 (92)
Q Consensus 18 n~~~~~p~~ln~~gS~~~~-~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~~ 91 (92)
-++=+.|+.+-++.+.+.- ..+++.++|..--+ -++.=++|++.+++++.|..+.+.+.-+..|..||.++..
T Consensus 82 ~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~i-Ka~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~ 155 (316)
T KOG1441|consen 82 PLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTI-KALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV 155 (316)
T ss_pred chHHHHHHHHHHHHHHHhcchhhhccchhHHHHH-HhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence 4556788888888777765 78888999988877 5888889999999988888888999999999999999763
No 56
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=75.17 E-value=3.9 Score=32.83 Aligned_cols=60 Identities=23% Similarity=0.187 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHH-hhhccccchhhHHHHHhhhhheeee
Q 046747 29 LSASATFFAILSHTPISLAVPVTNATTFAATAFFGLL-LGERTRVGFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 29 ~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~-l~e~~~~~~~~~G~~LI~~Gv~L~~ 90 (92)
..|-..-||.+...++|=|+-++ =.+=+||.+.+|. ++|+-..++ .+|...-+.||.|++
T Consensus 108 ~tgvmlmyya~~~mslaDA~vIt-FssPvft~ifaw~~LkE~~t~~e-aL~s~itl~GVVLIv 168 (346)
T KOG4510|consen 108 FTGVMLMYYALMYMSLADAVVIT-FSSPVFTIIFAWAFLKEPFTKFE-ALGSLITLLGVVLIV 168 (346)
T ss_pred hhHHHHHHHHHhhcchhheEEEE-ecChHHHHHHHHHHHcCCCcHHH-HHHHHHhhheEEEEe
Confidence 35667778999999999888885 6677899999987 555555544 999999999999986
No 57
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=72.89 E-value=14 Score=29.31 Aligned_cols=79 Identities=15% Similarity=0.057 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH-----HHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHh
Q 046747 8 SLKNWLALLVIWQYTVPFLLNLSASAT-----FFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASI 82 (92)
Q Consensus 8 ~~~~~~~ll~n~~~~~p~~ln~~gS~~-----~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI 82 (92)
.++..-..-+.|..+--+.+....|.+ |.-+-.-.|+.-.+ +...-=.||.+.+.+++.+..+.|.|+|..++
T Consensus 227 lweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSi--vTTTRKfFTil~SVllf~npls~rQwlgtvlV 304 (337)
T KOG1580|consen 227 LWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSI--VTTTRKFFTILISVLLFNNPLSGRQWLGTVLV 304 (337)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEE--EeehHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Confidence 444444555666666555555555543 33444445554433 23556678999999988899899999999999
Q ss_pred hhhhee
Q 046747 83 VLGVWL 88 (92)
Q Consensus 83 ~~Gv~L 88 (92)
..|...
T Consensus 305 F~aL~~ 310 (337)
T KOG1580|consen 305 FSALTA 310 (337)
T ss_pred HHHhhh
Confidence 988653
No 58
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=70.61 E-value=10 Score=31.42 Aligned_cols=61 Identities=20% Similarity=0.125 Sum_probs=49.7
Q ss_pred HHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeeec
Q 046747 30 SASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCIN 91 (92)
Q Consensus 30 ~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~~ 91 (92)
.+...+-..|+...++-.--+ -|.+=+||.+.|..++.|.-++.+.+++.+-+.||.++..
T Consensus 171 ~anl~~naALa~TsVAS~Til-SStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~ 231 (416)
T KOG2765|consen 171 LANLTSNAALAFTSVASTTIL-SSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTM 231 (416)
T ss_pred HHHHHHHHHhhhhhhhhhhhh-hhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEe
Confidence 445556677777777665555 4889999999999999888899999999999999998753
No 59
>PRK02237 hypothetical protein; Provisional
Probab=68.84 E-value=29 Score=23.83 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=51.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhcc-CCceeehhhHHHHHHHHHHH-HHHHhhhccccchhhHHHHHhhhhhee
Q 046747 11 NWLALLVIWQYTVPFLLNLSASATFFAILSH-TPISLAVPVTNATTFAATAF-FGLLLGERTRVGFSLLGMASIVLGVWL 88 (92)
Q Consensus 11 ~~~~ll~n~~~~~p~~ln~~gS~~~~~~L~~-~dlSla~P~~nsl~fv~t~l-~~~~l~e~~~~~~~~~G~~LI~~Gv~L 88 (92)
.|++.=+++++.+|-.+-. +..-|..++.. .+..-+|-.= .=-|+.+.+ =++...+..++..-++|..+.++|+.+
T Consensus 25 ~wlR~~ks~~~~~pg~~~L-~lfg~llTl~p~~~~GRvYAAY-GGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~i 102 (109)
T PRK02237 25 LWLREGKSAWWLLPGALSL-ALFGWLLTLQPDAAFGRVYAAY-GGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAV 102 (109)
T ss_pred HHHHcCCchhHHHHHHHHH-HHHHHHHhcCCchhhhhHHHHh-hhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHH
Confidence 3455455777888875533 33456666665 5677777763 555666664 345565666777779999999999987
Q ss_pred ee
Q 046747 89 CI 90 (92)
Q Consensus 89 ~~ 90 (92)
+.
T Consensus 103 I~ 104 (109)
T PRK02237 103 IM 104 (109)
T ss_pred he
Confidence 63
No 60
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=67.16 E-value=7.2 Score=31.29 Aligned_cols=69 Identities=20% Similarity=0.195 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhhee
Q 046747 20 QYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWL 88 (92)
Q Consensus 20 ~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L 88 (92)
.|+..=.+-|-.-+=..|.|+..-=|+.+-++-.+==.+..+.+...+|+.-.+.-|+|.+|+..|..+
T Consensus 243 ~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~ 311 (330)
T KOG1583|consen 243 VYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLL 311 (330)
T ss_pred HHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHH
Confidence 344444444544555557788777788888776777777888888888999888889999999999865
No 61
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=66.32 E-value=7.7 Score=31.38 Aligned_cols=69 Identities=20% Similarity=0.302 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747 21 YTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 21 ~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~ 90 (92)
++.|-+|-.+||.+-+..|--+.-|- +-+.-.-.-+|+.+.+.-+-+..+..++|+|+..++.|...+.
T Consensus 89 fl~Pal~Di~gsslm~vgL~lTsASs-fQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg 157 (372)
T KOG3912|consen 89 FLPPALCDIAGSSLMYVGLNLTSASS-FQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVG 157 (372)
T ss_pred ecChHHHHHhhhHHHHHHHHHhhHHH-HHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheee
Confidence 56689999999999887765433332 2233445567888877655555556688999999999988764
No 62
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=66.30 E-value=54 Score=26.07 Aligned_cols=76 Identities=13% Similarity=0.112 Sum_probs=49.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHH--HHHHH--HHhcc---CCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHH
Q 046747 9 LKNWLALLVIWQYTVPFLLNLSA--SATFF--AILSH---TPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMAS 81 (92)
Q Consensus 9 ~~~~~~ll~n~~~~~p~~ln~~g--S~~~~--~~L~~---~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~L 81 (92)
.+++.++.+||+-+..+.+...- +=+|. +...+ .|.|+.|=+ |=+ +.++.|+++.+|..++-+|+.+++
T Consensus 59 ~~~~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~I-nPL---~~VllG~lflkErls~~Q~iAV~l 134 (293)
T COG2962 59 WRELKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFI-NPL---VNVLLGRLFLKERLSRLQWIAVGL 134 (293)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHH-HHH---HHHHHHHHHHHhhccHHHHHHHHH
Confidence 45667789999888777665432 22222 33333 356666644 333 466778876666667677999999
Q ss_pred hhhhhee
Q 046747 82 IVLGVWL 88 (92)
Q Consensus 82 I~~Gv~L 88 (92)
-.+||..
T Consensus 135 A~~GV~~ 141 (293)
T COG2962 135 AAAGVLI 141 (293)
T ss_pred HHHHHHH
Confidence 9999864
No 63
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=63.97 E-value=14 Score=29.98 Aligned_cols=70 Identities=16% Similarity=0.114 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhhee
Q 046747 18 IWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWL 88 (92)
Q Consensus 18 n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L 88 (92)
|+..+...+.|..|-++=-.+.+.+|==+=. .+.|++-+++.+++.++++..++..-.+|..+++.-+.+
T Consensus 250 s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~-f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~l 319 (345)
T KOG2234|consen 250 SSIVWLVVLLNAVGGLLVSLVMKYADNILKG-FSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFL 319 (345)
T ss_pred cHHHHHHHHHHhccchhHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Confidence 5566777777777777777777777743322 235999999999998899999999999999999887654
No 64
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.73 E-value=4.6 Score=32.44 Aligned_cols=38 Identities=24% Similarity=0.175 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhhee
Q 046747 51 TNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWL 88 (92)
Q Consensus 51 ~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L 88 (92)
--|++-+||++..+.+.+++.+..-..++.+|+.|-.+
T Consensus 134 gRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l 171 (347)
T KOG1442|consen 134 GRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL 171 (347)
T ss_pred ccchhhhHHHHhHHhhcccccccccceeehhheehhee
Confidence 36999999999999877777787879999999999776
No 65
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=58.45 E-value=2.9 Score=32.95 Aligned_cols=54 Identities=26% Similarity=0.493 Sum_probs=43.1
Q ss_pred HHhccCCceeehhhHHHHHHHHHHHHHHH-hhhccccchhhHH---HHHhhhhheeee
Q 046747 37 AILSHTPISLAVPVTNATTFAATAFFGLL-LGERTRVGFSLLG---MASIVLGVWLCI 90 (92)
Q Consensus 37 ~~L~~~dlSla~P~~nsl~fv~t~l~~~~-l~e~~~~~~~~~G---~~LI~~Gv~L~~ 90 (92)
-..+-.-+|.|.|+.+..-.|-|-+.|.+ +||=....+.++| +++|+.|+++..
T Consensus 78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs 135 (288)
T COG4975 78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTS 135 (288)
T ss_pred hheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEee
Confidence 44566779999999999999999999976 7776666565665 679999998864
No 66
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=57.79 E-value=47 Score=24.81 Aligned_cols=56 Identities=23% Similarity=0.419 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747 28 NLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 28 n~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~ 90 (92)
+......+++.+++.|.+.+--+ +..+=+++++.+ +|+. +++.++.+.++|+.++.
T Consensus 81 ~~~~~~~~~~al~~~~~~~a~~l-~~t~Pi~~~ll~---~~~~---~~~~~~~i~~~Gv~li~ 136 (293)
T PRK10532 81 LGGMNYLFYLSIQTVPLGIAVAL-EFTGPLAVALFS---SRRP---VDFVWVVLAVLGLWFLL 136 (293)
T ss_pred HHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHHh---cCCh---HHHHHHHHHHHHHheee
Confidence 55566778889999988877544 233333343332 2332 34667788889998765
No 67
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=57.43 E-value=35 Score=23.35 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=51.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHH-HHHHhhhccccchhhHHHHHhhhhheee
Q 046747 11 NWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAF-FGLLLGERTRVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 11 ~~~~ll~n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l-~~~~l~e~~~~~~~~~G~~LI~~Gv~L~ 89 (92)
.|++.=+++++.+|-.+- .+..-|..++...+..-+|-.- .=-|+.+.+ =++...++.+++--++|..+.++|+.++
T Consensus 24 ~wlR~~k~~~~~~~G~~~-L~lfg~l~Tl~p~~fGRvYAAY-GGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI 101 (107)
T PF02694_consen 24 LWLREGKSPWWLLPGALS-LALFGWLLTLQPAAFGRVYAAY-GGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII 101 (107)
T ss_pred HHHHCCCCeeeHhhHHHH-HHHHHHHhhcCcccchhHHHHh-hhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe
Confidence 344455667777776442 3344566777777777778774 444555555 3445555667777799999999999876
Q ss_pred e
Q 046747 90 I 90 (92)
Q Consensus 90 ~ 90 (92)
.
T Consensus 102 ~ 102 (107)
T PF02694_consen 102 L 102 (107)
T ss_pred E
Confidence 4
No 68
>PF09913 DUF2142: Predicted membrane protein (DUF2142); InterPro: IPR018674 This family of conserved hypothetical proteins has no known function.
Probab=52.62 E-value=33 Score=26.59 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhh
Q 046747 22 TVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVL 84 (92)
Q Consensus 22 ~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~ 84 (92)
+.|..++|.+|+-+ | ++++++++.+.+..-....|+..+.|.++...+.+.
T Consensus 155 l~Pm~~~~~aS~s~-------D-----~~~~~~~~l~~a~~l~~~~~~~~~~~~~~~l~v~~~ 205 (389)
T PF09913_consen 155 LLPMTLFQAASVSY-------D-----GLIIALAFLFIALLLRLYRKKKITRRDLILLGVLAV 205 (389)
T ss_pred HHHHHHHHHHhcCH-------H-----HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 45677777776532 3 455788888777766665555566665665555444
No 69
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=51.54 E-value=17 Score=29.15 Aligned_cols=39 Identities=15% Similarity=0.286 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeee
Q 046747 52 NATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 52 nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~ 90 (92)
-|=+-+.|++.||.+-++.-+.+++.-++.+-+|+.+|.
T Consensus 98 Rsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcT 136 (330)
T KOG1583|consen 98 RSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICT 136 (330)
T ss_pred ecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEE
Confidence 356778899999998888878888999999999999985
No 70
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=47.63 E-value=8.2 Score=30.48 Aligned_cols=70 Identities=19% Similarity=0.360 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHH-hhhccccc---hhhHHHHHhhhhheee
Q 046747 19 WQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLL-LGERTRVG---FSLLGMASIVLGVWLC 89 (92)
Q Consensus 19 ~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~-l~e~~~~~---~~~~G~~LI~~Gv~L~ 89 (92)
|.-++|-++-..|-+..++.=++.-+-.+.-+. =++=+...+.|.+ ++|++.++ -.++|.+||++|..+.
T Consensus 210 ~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlS-QlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~l 283 (288)
T COG4975 210 WLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLS-QLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILL 283 (288)
T ss_pred HHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHh-hheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhh
Confidence 556788889999999888888877777777665 3455556667765 77877553 3468999999887654
No 71
>PRK10621 hypothetical protein; Provisional
Probab=39.52 E-value=91 Score=23.18 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=32.6
Q ss_pred HHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhcc--ccchhhHHHHHhhhhhee
Q 046747 30 SASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERT--RVGFSLLGMASIVLGVWL 88 (92)
Q Consensus 30 ~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~--~~~~~~~G~~LI~~Gv~L 88 (92)
.+++..+...++.|...+.++ ..+-++++..|..+.++. ...|+....++++.|+.+
T Consensus 192 ~~~~~~~~~~G~v~~~~~l~l--~~g~~~G~~lG~~l~~~~~~~~lr~~~~~ll~~~~i~~ 250 (266)
T PRK10621 192 IGGLLLFILGGKVIWATGFVM--LVGQFLGARLGARLVLSKGQKLIRPMIVIVSAVMSAKL 250 (266)
T ss_pred HHHHHHHHhCCeehHHHHHHH--HHHHHHHHHHHHHHHHHcCchHhHHHHHHHHHHHHHHH
Confidence 334444444566677766666 344445555554444433 235778888888877654
No 72
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=37.45 E-value=1.2e+02 Score=24.05 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHH----HHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhhe
Q 046747 23 VPFLLNLSASATFF----AILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVW 87 (92)
Q Consensus 23 ~p~~ln~~gS~~~~----~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~ 87 (92)
..+.+-.++|.+=| ..|+|.|=+.=--+ -|+==++.++.|+.+-+|..+..+|+|.++|+.+..
T Consensus 211 laLgvavlSSalPYsLEmiAL~rlp~~~F~~L-lSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 211 LALGVAVLSSALPYSLEMIALRRLPARTFGTL-LSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred HHHHHHHHhcccchHHHHHHHhhCChhHHHHH-HHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 34455555555543 55666665443334 377778889999886666667788999999998654
No 73
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=34.00 E-value=31 Score=26.54 Aligned_cols=64 Identities=11% Similarity=0.134 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHH--hhhcc----ccchhhHHHHHhhhhheee
Q 046747 26 LLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLL--LGERT----RVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 26 ~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~--l~e~~----~~~~~~~G~~LI~~Gv~L~ 89 (92)
.+...|-+.=..+.+..-+.++..+-+|.+-+.+-..|++ +|++. .++-.++|++++++|..+.
T Consensus 63 ~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f 132 (254)
T PF07857_consen 63 ALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIF 132 (254)
T ss_pred hhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHhe
Confidence 3333333333456666777777777777777777777764 44443 2355689999999987653
No 74
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=33.84 E-value=15 Score=29.19 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=25.0
Q ss_pred HHHHHhhhccccchhhHHHHHhhhhheee
Q 046747 61 FFGLLLGERTRVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 61 l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~ 89 (92)
+.|.+++++.-+|+++.=+++|++||.+-
T Consensus 127 ilGVl~~~KsY~w~kY~cVL~IV~GValF 155 (337)
T KOG1580|consen 127 ILGVLFAHKSYHWRKYCCVLMIVVGVALF 155 (337)
T ss_pred eeehhhhcccccHHHHHHHHHHHHHHHHh
Confidence 44777888888999999999999999874
No 75
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=33.43 E-value=29 Score=23.28 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=24.5
Q ss_pred CceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhhee
Q 046747 43 PISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWL 88 (92)
Q Consensus 43 dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L 88 (92)
-.|++.|+. .++..|+++-|.-.... +.=..++++|+++
T Consensus 49 G~~~v~pil------~G~~lG~WLD~~~~t~~-~~tl~~lllGv~~ 87 (100)
T TIGR02230 49 GWSVAIPTL------LGVAVGIWLDRHYPSPF-SWTLTMLIVGVVI 87 (100)
T ss_pred HHHHHHHHH------HHHHHHHHHHhhcCCCc-HHHHHHHHHHHHH
Confidence 345667774 66677888888775533 3334466677653
No 76
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=33.09 E-value=43 Score=22.97 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=21.4
Q ss_pred HHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747 58 ATAFFGLLLGERTRVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 58 ~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~ 89 (92)
|+.++-.+++ |...++...|.++++.+++++
T Consensus 76 F~~Fsv~~l~-E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 76 FAPFSVFYLG-EPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred eHHHHHHHhC-CCccHHHHHHHHHHHHhhhee
Confidence 3333333455 555788899999999998765
No 77
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=32.73 E-value=40 Score=27.31 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHh-hh------ccccchhhHHHHHhhhhheeee
Q 046747 26 LLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLL-GE------RTRVGFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 26 ~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l-~e------~~~~~~~~~G~~LI~~Gv~L~~ 90 (92)
++-+.|.+.|=...++.-+|+.+.++-.++=+++.+.--.+ |+ +....-..+|+++.++|+.+|.
T Consensus 81 ~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g 152 (344)
T PF06379_consen 81 VLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICG 152 (344)
T ss_pred HHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHh
Confidence 46678888888999999999999998888888877764332 21 1123467899999999998764
No 78
>PF14809 TGT_C1: C1 domain of tRNA-guanine transglycosylase dimerisation; PDB: 1J2B_A 1IT8_A 1IT7_B 1IQ8_A.
Probab=31.85 E-value=8.8 Score=24.24 Aligned_cols=10 Identities=30% Similarity=0.620 Sum_probs=8.1
Q ss_pred ceeehhhHHH
Q 046747 44 ISLAVPVTNA 53 (92)
Q Consensus 44 lSla~P~~ns 53 (92)
||+.||++||
T Consensus 51 LsLtyPFAQS 60 (70)
T PF14809_consen 51 LSLTYPFAQS 60 (70)
T ss_dssp TTTSTTTSSE
T ss_pred eeeccccccc
Confidence 6888888876
No 79
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=31.17 E-value=1.3e+02 Score=20.68 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=14.1
Q ss_pred chhhHHHHHhhhhheeee
Q 046747 73 GFSLLGMASIVLGVWLCI 90 (92)
Q Consensus 73 ~~~~~G~~LI~~Gv~L~~ 90 (92)
.++..|..++..|+.+..
T Consensus 172 i~~~~g~~li~~av~l~~ 189 (191)
T PF01810_consen 172 INRISGLLLIGFAVYLLY 189 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467889999999887643
No 80
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=30.50 E-value=85 Score=23.87 Aligned_cols=40 Identities=28% Similarity=0.501 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhcccc-----chhhHHHHHhhhhhee
Q 046747 49 PVTNATTFAATAFFGLLLGERTRV-----GFSLLGMASIVLGVWL 88 (92)
Q Consensus 49 P~~nsl~fv~t~l~~~~l~e~~~~-----~~~~~G~~LI~~Gv~L 88 (92)
+++|+.+-+.+.+.|.+++++.+. ..+.+|...+..|+..
T Consensus 4 tiiN~~aIl~G~~iG~~~~~~i~~~~~~~l~~~~Gl~~l~iGi~~ 48 (226)
T PF04474_consen 4 TIINALAILLGGLIGLLLGRRIPERIKDTLMQALGLCVLAIGISM 48 (226)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhHHHHHHHHHH
Confidence 567999999999999988877643 3557788888888753
No 81
>PRK04164 hypothetical protein; Provisional
Probab=30.18 E-value=1.5e+02 Score=21.53 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=41.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhcccc
Q 046747 13 LALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRV 72 (92)
Q Consensus 13 ~~ll~n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~ 72 (92)
+.+.+..+++.| ++-..-.++|.+.++..=-.+--|. |-++|..+..+|.+++.....
T Consensus 29 i~~~kg~~~~a~-~~gf~e~~i~i~~~~~v~~~l~~~~-~~~aYa~Gf~~g~~Vg~~ied 86 (181)
T PRK04164 29 ILTVKGYRYLAA-LLGFLEVLIYVVALGLVFQNLDNPQ-NIIAYALGFAVGIYVGMKIEE 86 (181)
T ss_pred HHhhcCcchHhH-HHHHHHHHHHHHHHHHHHhCCccHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 345556777776 4566788999988887644455888 789999988888776654433
No 82
>TIGR01528 NMN_trans_PnuC nicotinamide mononucleotide transporter PnuC. The PnuC protein of E. coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see TIGR01526). This model defines a region corresponding to most of the length of PnuC, found primarily in pathogens. The extreme N- and C-terminal regions are poorly conserved and not included in the alignment and model.
Probab=30.08 E-value=1.8e+02 Score=20.89 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhcc-ccchhhH
Q 046747 25 FLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERT-RVGFSLL 77 (92)
Q Consensus 25 ~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~-~~~~~~~ 77 (92)
..+-..+++.+.+.+++.+- ..|...|++.+++.++.++.-++. -.+--|+
T Consensus 94 ~~~~~~~~~~~~~~l~~~~~--~~p~~Da~~t~~Siva~~l~~~k~~E~W~~Wi 145 (189)
T TIGR01528 94 LSTSVVLTVVIALILKFIGD--NFPWLDSITFVIGIVAQILMVRRYRENWILWL 145 (189)
T ss_pred HHHHHHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33444667777777777543 679999999999999888755544 3444343
No 83
>KOG4349 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.72 E-value=1.5e+02 Score=21.20 Aligned_cols=55 Identities=13% Similarity=0.264 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCcee--ehhhHHHHHHH
Q 046747 2 HQKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISL--AVPVTNATTFA 57 (92)
Q Consensus 2 ~~~~~~~~~~~~~ll~n~~~~~p~~ln~~gS~~~~~~L~~~dlSl--a~P~~nsl~fv 57 (92)
.||..+.+.+.+--..-|..+....+-.+++++=+++|+|.+.-- .+|+. =+.|+
T Consensus 35 s~~~ln~f~Emwy~vFLWal~Ss~fih~~A~ilalFTLRkHkygrF~si~il-iMgfi 91 (143)
T KOG4349|consen 35 SGKYLNDFWEMWYSVFLWALLSSMFIHLGATILALFTLRKHKYGRFISIPIL-IMGFI 91 (143)
T ss_pred CcchhccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccceeeehHHH-HHHHH
Confidence 466667777777777788888999999999999999999998653 34443 34443
No 84
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.61 E-value=47 Score=23.80 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=17.3
Q ss_pred hhhcc--ccchhhHHHHHhhhhhee
Q 046747 66 LGERT--RVGFSLLGMASIVLGVWL 88 (92)
Q Consensus 66 l~e~~--~~~~~~~G~~LI~~Gv~L 88 (92)
+|+++ .+..|++|++++++|+.+
T Consensus 119 ~g~~~~~~~~~r~lgi~L~l~gil~ 143 (150)
T COG3238 119 FGVPKRPLNLPRILGILLVLAGILL 143 (150)
T ss_pred cCCCcCCCCHHHHHHHHHHHHHHHH
Confidence 45554 457889999999999543
No 85
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=27.90 E-value=1.7e+02 Score=20.49 Aligned_cols=59 Identities=10% Similarity=0.131 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHH----HHHHHHHH
Q 046747 3 QKLFASLKNWLALLVIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATT----FAATAFFG 63 (92)
Q Consensus 3 ~~~~~~~~~~~~ll~n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~----fv~t~l~~ 63 (92)
+|+.+.+...----++|++++....--.+...|.| |..-+.|.. |+.+|+. |.+..+..
T Consensus 14 rRLtEvI~~l~Pst~RWRiiL~v~svct~v~A~~w-L~Dp~ts~~-~~~~sL~~H~~FtiS~~~l 76 (125)
T PF09771_consen 14 RRLTEVINSLQPSTTRWRIILVVVSVCTAVGAWHW-LMDPETSQV-SFLDSLWNHPFFTISCIIL 76 (125)
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHH-hcCcccccc-hHHHHHHhCHhHHHHHHHH
Confidence 56666666666667899998887766666666766 444454444 5557764 55544444
No 86
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.61 E-value=3.7e+02 Score=21.87 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH----hccCCceeehhhHHHHHHHH-HHHHHHHhhhcccc------chhhHHHHHhhhhh
Q 046747 18 IWQYTVPFLLNLSASATFFAI----LSHTPISLAVPVTNATTFAA-TAFFGLLLGERTRV------GFSLLGMASIVLGV 86 (92)
Q Consensus 18 n~~~~~p~~ln~~gS~~~~~~----L~~~dlSla~P~~nsl~fv~-t~l~~~~l~e~~~~------~~~~~G~~LI~~Gv 86 (92)
.|..++-+++-.+-.+.++.- |...|-|+..|+- =..|=. +.+++..+++|-.. .....|+..|..|+
T Consensus 223 ~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~Piy-yV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~ 301 (335)
T KOG2922|consen 223 YPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIY-YVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGI 301 (335)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhH-HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhhee
Confidence 344555555556666666654 5567999999994 444433 33455555555432 24478999999999
Q ss_pred eee
Q 046747 87 WLC 89 (92)
Q Consensus 87 ~L~ 89 (92)
+|.
T Consensus 302 flL 304 (335)
T KOG2922|consen 302 FLL 304 (335)
T ss_pred eEe
Confidence 986
No 87
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=25.33 E-value=71 Score=20.30 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=13.5
Q ss_pred chhhHHHHHhhhhheee
Q 046747 73 GFSLLGMASIVLGVWLC 89 (92)
Q Consensus 73 ~~~~~G~~LI~~Gv~L~ 89 (92)
.++..|.+++++|+..+
T Consensus 82 ~~k~~Gil~Ii~aii~~ 98 (100)
T PF13273_consen 82 NPKLAGILFIIAAIISL 98 (100)
T ss_pred CchhhhhhhhHHHHHHH
Confidence 35699999999998654
No 88
>PRK13871 conjugal transfer protein TrbC; Provisional
Probab=24.20 E-value=1.1e+02 Score=21.79 Aligned_cols=49 Identities=22% Similarity=0.194 Sum_probs=34.6
Q ss_pred HHHHHhccCCceeehhhHHHHHHHHHHHHHH--Hhhhccccc-hhhHHHHHh
Q 046747 34 TFFAILSHTPISLAVPVTNATTFAATAFFGL--LLGERTRVG-FSLLGMASI 82 (92)
Q Consensus 34 ~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~--~l~e~~~~~-~~~~G~~LI 82 (92)
=|=--|.+.-=|+.=|++..++-+.-+++|. .+|+|.... ||.+-+++.
T Consensus 36 PWE~pLq~I~~SItGPVA~~IavIaIivaG~~liFGg~~~gf~Rrl~~vVlg 87 (135)
T PRK13871 36 PWESPLQQIQQSITGPVAGFIALAAVAIAGAMLIFGGELNDFARRLCYVALV 87 (135)
T ss_pred ccchHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHH
Confidence 3555666666788888887777777777763 489888887 777555553
No 89
>COG2246 Predicted membrane protein [Function unknown]
Probab=23.85 E-value=2.5e+02 Score=19.31 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=25.2
Q ss_pred HHHhccCCceeehhhHHHHHHHHHHHHHHHhhh
Q 046747 36 FAILSHTPISLAVPVTNATTFAATAFFGLLLGE 68 (92)
Q Consensus 36 ~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e 68 (92)
++++.+. +...|+.+|..+|..+.+.++.+.+
T Consensus 31 ~~ll~~~-~~~~~~~A~~~a~~~~ii~sf~~N~ 62 (139)
T COG2246 31 LWLLVKA-LGVPYALANAIAYEAAIIFSFVLNR 62 (139)
T ss_pred HHHHHHh-cccchHHHHHHHHHHHHHHHHHHHc
Confidence 3556666 7888899999999999999876653
No 90
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=23.69 E-value=3.2e+02 Score=22.22 Aligned_cols=65 Identities=18% Similarity=0.298 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHH-----HHhccCCce-----eehhhHHHHHHHHHHHHHHHhhhcccc-ch----hhHHHHHhhhhheee
Q 046747 25 FLLNLSASATFF-----AILSHTPIS-----LAVPVTNATTFAATAFFGLLLGERTRV-GF----SLLGMASIVLGVWLC 89 (92)
Q Consensus 25 ~~ln~~gS~~~~-----~~L~~~dlS-----la~P~~nsl~fv~t~l~~~~l~e~~~~-~~----~~~G~~LI~~Gv~L~ 89 (92)
++.-..+.++|| |..+++.+. ...++-+|+.-++.-+.|..++|=+.. +| -++|+++++..+.++
T Consensus 259 ~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~lkEWKg~s~kt~~vl~~G~~vlI~s~~iv 338 (344)
T PF06379_consen 259 YLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLILKEWKGASKKTIRVLVLGIAVLILSVVIV 338 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHHH
Confidence 444445666665 566655544 456777888888888899999997743 22 257777777766543
No 91
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=23.07 E-value=83 Score=25.62 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=41.1
Q ss_pred ccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheeeec
Q 046747 40 SHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLCIN 91 (92)
Q Consensus 40 ~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~~~ 91 (92)
.-.++|+ |-++-|=+-+|-.+.+..++-|+.++.-..=+.+|-+|+++.+.
T Consensus 106 ~yVtlSl-YTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~ 156 (349)
T KOG1443|consen 106 EYVTLSL-YTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTY 156 (349)
T ss_pred eeeeeee-eeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEe
Confidence 3344443 67788999999999999999888888888888999999988653
No 92
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=22.75 E-value=2.3e+02 Score=23.73 Aligned_cols=42 Identities=19% Similarity=0.424 Sum_probs=34.1
Q ss_pred ccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747 40 SHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 40 ~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~ 89 (92)
...-+|+..|++ +++..+++++..++.-++|.+.|++|-..+
T Consensus 347 ~TlgmSltIPLA--------~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~v 388 (416)
T KOG2765|consen 347 VTLGMSLTIPLA--------MFADVLIKGKHPSALYIIGSIPIFVGFVIV 388 (416)
T ss_pred heeeeeEeeeHH--------HHHHHHHcCCCCCHHHHHHHHHHHHHHhhe
Confidence 445577788875 677888989998988899999999997764
No 93
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=22.43 E-value=3.7e+02 Score=20.70 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHH--hhhcc
Q 046747 18 IWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLL--LGERT 70 (92)
Q Consensus 18 n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~--l~e~~ 70 (92)
|++|+.|+.+=..-+++-+.-+= .-+=-.||. ..-+|.++++.|.. +.+|.
T Consensus 53 ~~~fL~~l~~G~~~gi~~~s~~i-~~ll~~yp~-~t~~fF~GLIlgSip~l~k~~ 105 (257)
T PF04018_consen 53 NLKFLLPLGIGILIGILLFSKVI-SYLLENYPI-PTYSFFFGLILGSIPFLYKEI 105 (257)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 89999999665554444331111 112224666 58899999998853 55554
No 94
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=20.75 E-value=8 Score=31.20 Aligned_cols=66 Identities=14% Similarity=0.183 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccc-cchhhHHHHHhhhhhee
Q 046747 23 VPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTR-VGFSLLGMASIVLGVWL 88 (92)
Q Consensus 23 ~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~-~~~~~~G~~LI~~Gv~L 88 (92)
.+..+.-.|.++--|..+-+.+|+|-|+.-|++-|.+...-|++-.+.. ..--+.|+.++++-|.+
T Consensus 77 aGGvvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfld~~~n~a~iLF~GV~cf~iAI~l 143 (336)
T PF07168_consen 77 AGGVVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFLDPKINRAEILFPGVACFLIAIIL 143 (336)
T ss_pred HhhHhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeeccCCCCCceEEEccHHHHHHHHHH
Confidence 3444445677777899999999999999999999999888877644432 22335688888877755
No 95
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=20.58 E-value=4e+02 Score=20.50 Aligned_cols=42 Identities=24% Similarity=0.199 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHH
Q 046747 22 TVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLL 65 (92)
Q Consensus 22 ~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~ 65 (92)
...+..+..++.+.+|.+...|.=+|.| |.++++++.+-=.+
T Consensus 162 ~Ls~a~fl~a~~W~lYGlli~D~~Iaip--N~iG~~l~~~QL~L 203 (243)
T KOG1623|consen 162 PLSFALFLVAVQWLLYGLLIKDFFIAIP--NVLGFLLGLIQLIL 203 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCeEEEcc--cHHHHHHHHHHHHH
Confidence 3467888888888899999999999977 78999998884443
No 96
>PF04138 GtrA: GtrA-like protein; InterPro: IPR007267 Members of this entry belong to the GtrA family and are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane []. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyses the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b) []. This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and Listeria monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose [].; GO: 0000271 polysaccharide biosynthetic process, 0006810 transport, 0016021 integral to membrane
Probab=20.54 E-value=92 Score=19.67 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=17.2
Q ss_pred ceeehhhHHHHHHHHHHHHHHHhhh
Q 046747 44 ISLAVPVTNATTFAATAFFGLLLGE 68 (92)
Q Consensus 44 lSla~P~~nsl~fv~t~l~~~~l~e 68 (92)
....++.+|.++|..+.+.++.+.+
T Consensus 24 ~~~~~~~A~~ia~~~~~~~~f~ln~ 48 (117)
T PF04138_consen 24 LGLNYLLANVIAFIVAIIFNFILNR 48 (117)
T ss_pred HCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4455777788888888887765543
No 97
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=20.24 E-value=85 Score=22.44 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=17.2
Q ss_pred hhccccchhhHHHHHhhhhheee
Q 046747 67 GERTRVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 67 ~e~~~~~~~~~G~~LI~~Gv~L~ 89 (92)
++.....++..|.+++..|+++.
T Consensus 188 ~~~~~~i~~~~G~lli~~g~~~l 210 (211)
T PF02683_consen 188 RRWSRWIKRISGILLIALGLYLL 210 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444568899999999998763
Done!