Query 046747
Match_columns 92
No_of_seqs 102 out of 184
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 06:38:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 99.2 2.7E-11 9.2E-16 80.1 6.9 73 17-89 29-101 (110)
2 2i68_A Protein EMRE; transmemb 99.1 7.1E-11 2.4E-15 81.5 5.5 73 17-89 29-101 (137)
3 2l9u_A Receptor tyrosine-prote 12.6 1.3E+02 0.0044 16.2 1.9 26 40-65 2-27 (40)
4 3ug9_A Archaeal-type opsin 1, 11.9 1.7E+02 0.0057 22.4 3.1 33 13-45 64-96 (333)
5 1pp9_J Ubiquinol-cytochrome C 10.5 1.7E+02 0.0057 17.1 2.1 18 53-70 17-34 (62)
6 1c17_M ATP synthase subunit A; 8.3 1.6E+02 0.0054 20.1 1.6 16 55-70 159-174 (177)
7 1kf6_C Fumarate reductase 15 k 7.6 5.4E+02 0.018 17.1 4.3 26 7-32 54-79 (130)
8 3eff_K Voltage-gated potassium 6.9 5E+02 0.017 16.1 4.1 64 26-89 17-82 (139)
9 3arc_M Photosystem II reaction 6.8 1.2E+02 0.0042 16.1 0.3 10 52-61 4-13 (36)
10 3f4m_A Tumor necrosis factor, 6.7 3.5E+02 0.012 18.6 2.8 24 1-24 112-135 (161)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=99.22 E-value=2.7e-11 Score=80.10 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747 17 VIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 17 ~n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~ 89 (92)
++|..+.....+..+..+|.+.+++.|+|.|||+-.+++++++++.|+++.+|..++++++|+.+|+.|+.+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l 101 (110)
T 3b5d_A 29 RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLII 101 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 3567788899999999999999999999999999559999999999998777777888899999999999764
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.12 E-value=7.1e-11 Score=81.52 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccccchhhHHHHHhhhhheee
Q 046747 17 VIWQYTVPFLLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTRVGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 17 ~n~~~~~p~~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~~~~~~~G~~LI~~Gv~L~ 89 (92)
++|.++.+.+.+..+..+|.+.+++.|+|.|||+-.+++.+++++.|+++.+|..++++++|+++|++|+.+.
T Consensus 29 ~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll 101 (137)
T 2i68_A 29 RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLII 101 (137)
T ss_dssp -----CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 3567789999999999999999999999999999449999999999988766776888899999999999864
No 3
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=12.56 E-value=1.3e+02 Score=16.16 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=16.3
Q ss_pred ccCCceeehhhHHHHHHHHHHHHHHH
Q 046747 40 SHTPISLAVPVTNATTFAATAFFGLL 65 (92)
Q Consensus 40 ~~~dlSla~P~~nsl~fv~t~l~~~~ 65 (92)
+|..+.+|..++..++-+|-++.+.+
T Consensus 2 g~thl~malt~i~gl~vif~~lg~tf 27 (40)
T 2l9u_A 2 GRTHLTMALTVIAGLVVIFMMLGGTF 27 (40)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHhCcee
Confidence 45556666666667777776665543
No 4
>3ug9_A Archaeal-type opsin 1, archaeal-type opsin 2; microbialrhodopsin, seven-transmembrane, light-gated cation membrane protein; HET: RET OLA; 2.30A {Chlamydomonas reinhardtii}
Probab=11.89 E-value=1.7e+02 Score=22.42 Aligned_cols=33 Identities=9% Similarity=-0.127 Sum_probs=21.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhccCCce
Q 046747 13 LALLVIWQYTVPFLLNLSASATFFAILSHTPIS 45 (92)
Q Consensus 13 ~~ll~n~~~~~p~~ln~~gS~~~~~~L~~~dlS 45 (92)
-+++.+-++++.+.+...++++|++.-.|.|-.
T Consensus 64 ~~~~~~~~lWvvfa~M~aatlfF~~~~~rv~~~ 96 (333)
T 3ug9_A 64 EKLAANILQWITFALSALCLMFYGYQTWKSTCG 96 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 367888999999999999999999888888764
No 5
>1pp9_J Ubiquinol-cytochrome C reductase complex 7.2 kDa; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.14.1 PDB: 1bgy_J* 1be3_J* 1l0n_J* 1ntk_J* 1ntm_J* 1ntz_J* 1nu1_J* 1l0l_J* 1ppj_J* 1sqb_J* 1sqp_J* 1sqq_J* 1sqv_J* 1sqx_J* 2a06_J* 2fyu_J* 2ybb_J* 1bcc_J* 2bcc_J* 3bcc_J* ...
Probab=10.49 E-value=1.7e+02 Score=17.12 Aligned_cols=18 Identities=44% Similarity=0.552 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 046747 53 ATTFAATAFFGLLLGERT 70 (92)
Q Consensus 53 sl~fv~t~l~~~~l~e~~ 70 (92)
+-+|+.++++|.+++|..
T Consensus 17 nS~y~~~i~~gaf~fe~~ 34 (62)
T 1pp9_J 17 TSTFALTIVVGALFFERA 34 (62)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 347888888888888865
No 6
>1c17_M ATP synthase subunit A; membrane protein, helix, complex; NMR {Escherichia coli} SCOP: f.18.1.1
Probab=8.29 E-value=1.6e+02 Score=20.10 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhhcc
Q 046747 55 TFAATAFFGLLLGERT 70 (92)
Q Consensus 55 ~fv~t~l~~~~l~e~~ 70 (92)
||||+.++..+++|..
T Consensus 159 AyVF~~Lt~vYi~~a~ 174 (177)
T 1c17_M 159 AFIFMVLTIVYLSMAS 174 (177)
T ss_dssp HHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7999999998888764
No 7
>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_C* 1l0v_C* 2b76_C* 3cir_C* 3p4p_C* 3p4q_C* 3p4r_C* 3p4s_C*
Probab=7.64 E-value=5.4e+02 Score=17.13 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Q 046747 7 ASLKNWLALLVIWQYTVPFLLNLSAS 32 (92)
Q Consensus 7 ~~~~~~~~ll~n~~~~~p~~ln~~gS 32 (92)
+..+++++.+.||..++==++-..++
T Consensus 54 ~aw~~fv~fl~nPivvilniiaLaa~ 79 (130)
T 1kf6_C 54 EAWAGFVDFLQNPVIVIINLITLAAA 79 (130)
T ss_dssp HHHHHHHHHHTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 45566677777776654333333333
No 8
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=6.91 E-value=5e+02 Score=16.09 Aligned_cols=64 Identities=13% Similarity=0.045 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccc--cchhhHHHHHhhhhheee
Q 046747 26 LLNLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTR--VGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 26 ~ln~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~--~~~~~~G~~LI~~Gv~L~ 89 (92)
.+...++..|++.=...+=+.-....+|+=|.++.++-.=.|+-.+ ...|+..++.++.|+.+.
T Consensus 17 ~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~ 82 (139)
T 3eff_K 17 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSF 82 (139)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHH
Confidence 3445566666555544332322334467766666653322444442 345688888888887653
No 9
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=6.77 E-value=1.2e+02 Score=16.08 Aligned_cols=10 Identities=40% Similarity=0.391 Sum_probs=7.7
Q ss_pred HHHHHHHHHH
Q 046747 52 NATTFAATAF 61 (92)
Q Consensus 52 nsl~fv~t~l 61 (92)
|.++|+.|++
T Consensus 4 n~l~fiAt~L 13 (36)
T 3arc_M 4 NQLGLIATAL 13 (36)
T ss_dssp CTTHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6778887776
No 10
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=6.69 E-value=3.5e+02 Score=18.57 Aligned_cols=24 Identities=8% Similarity=-0.013 Sum_probs=19.9
Q ss_pred ChhhHHHHHHHHHHHHhhHHHHHH
Q 046747 1 LHQKLFASLKNWLALLVIWQYTVP 24 (92)
Q Consensus 1 ~~~~~~~~~~~~~~ll~n~~~~~p 24 (92)
+++|+.+-++++...+.||.++--
T Consensus 112 LT~KS~~Ri~~vF~~f~~~efL~~ 135 (161)
T 3f4m_A 112 LTPKSHGRIRHVFDHFSDPGLLTA 135 (161)
T ss_dssp SCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcchHHHHHHHHHHhCCHHHHHH
Confidence 467888889999999999988754
Done!