Query 046747
Match_columns 92
No_of_seqs 102 out of 184
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 06:38:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046747.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046747hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p7tc1 f.14.1.1 (C:86-119) Po 22.1 32 0.0023 16.7 2.2 18 52-69 16-33 (34)
2 d1ppjw_ f.23.14.1 (W:) Subunit 18.2 33 0.0024 19.0 1.9 19 53-71 17-35 (62)
3 d1kf6c_ f.21.2.2 (C:) Fumarate 10.6 1.9E+02 0.014 17.8 4.3 30 5-34 52-81 (130)
4 d3cx5i1 f.23.14.1 (I:4-58) Sub 8.8 57 0.0041 17.5 1.0 16 55-70 13-28 (55)
5 d1q90m_ f.23.25.1 (M:) PetM su 8.7 49 0.0036 16.0 0.6 13 76-88 5-17 (34)
6 d1kqfb2 f.23.22.1 (B:246-290) 8.2 1.5E+02 0.011 15.1 2.5 17 48-65 13-29 (45)
7 d2onkc1 f.58.1.1 (C:1-252) Mol 6.7 2.9E+02 0.021 16.9 5.1 29 53-81 63-91 (252)
8 d1jb0l_ f.31.1.1 (L:) Photosys 5.2 3.1E+02 0.022 17.2 3.4 21 20-40 116-136 (151)
9 d1r3jc_ f.14.1.1 (C:) Potassiu 4.1 3.3E+02 0.024 14.7 3.3 62 28-89 19-82 (103)
10 d1ldda_ a.4.5.34 (A:) Anaphase 4.1 2.3E+02 0.016 15.6 1.9 13 17-29 8-20 (74)
No 1
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=22.05 E-value=32 Score=16.66 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 046747 52 NATTFAATAFFGLLLGER 69 (92)
Q Consensus 52 nsl~fv~t~l~~~~l~e~ 69 (92)
.|.+.++.+++-|+.|.|
T Consensus 16 ts~glv~aa~atwfvgre 33 (34)
T d2p7tc1 16 TSFGLVTAALATWFVGRE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHhhccc
Confidence 488888989888888865
No 2
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.21 E-value=33 Score=18.98 Aligned_cols=19 Identities=42% Similarity=0.468 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhhccc
Q 046747 53 ATTFAATAFFGLLLGERTR 71 (92)
Q Consensus 53 sl~fv~t~l~~~~l~e~~~ 71 (92)
+-+|+.|.++|.+++|...
T Consensus 17 nStf~~tI~~gAf~fE~~f 35 (62)
T d1ppjw_ 17 TSTFALTIVVGALFFERAF 35 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3479999999999888753
No 3
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=10.56 E-value=1.9e+02 Score=17.80 Aligned_cols=30 Identities=13% Similarity=0.031 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 046747 5 LFASLKNWLALLVIWQYTVPFLLNLSASAT 34 (92)
Q Consensus 5 ~~~~~~~~~~ll~n~~~~~p~~ln~~gS~~ 34 (92)
-.++.+.+++.+.||..++==++-..|+++
T Consensus 52 g~~aw~~fv~flqnP~vv~lniiaLaa~L~ 81 (130)
T d1kf6c_ 52 GPEAWAGFVDFLQNPVIVIINLITLAAALL 81 (130)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 346778899999999877665555555554
No 4
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.85 E-value=57 Score=17.46 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhhcc
Q 046747 55 TFAATAFFGLLLGERT 70 (92)
Q Consensus 55 ~fv~t~l~~~~l~e~~ 70 (92)
+|+.|.++|.+.+|..
T Consensus 13 v~~~tI~~gAf~fe~~ 28 (55)
T d3cx5i1 13 VFVGTIFAGAFVFQTV 28 (55)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677788887777765
No 5
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.69 E-value=49 Score=15.98 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=7.6
Q ss_pred hHHHHHhhhhhee
Q 046747 76 LLGMASIVLGVWL 88 (92)
Q Consensus 76 ~~G~~LI~~Gv~L 88 (92)
+.|.++.++|+.|
T Consensus 5 iagta~tmig~tl 17 (34)
T d1q90m_ 5 IAGTALTMVGMTL 17 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ecchhHHHHHHHH
Confidence 4566666666554
No 6
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=8.22 E-value=1.5e+02 Score=15.08 Aligned_cols=17 Identities=29% Similarity=0.235 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 046747 48 VPVTNATTFAATAFFGLL 65 (92)
Q Consensus 48 ~P~~nsl~fv~t~l~~~~ 65 (92)
=|+. .+++..|++++.+
T Consensus 13 Kpl~-~~~~~~~~~~~~f 29 (45)
T d1kqfb2 13 KPLA-AAGFIATFAGLIF 29 (45)
T ss_dssp HHHH-HHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHH
Confidence 4775 8889999888754
No 7
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.67 E-value=2.9e+02 Score=16.89 Aligned_cols=29 Identities=10% Similarity=0.047 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHH
Q 046747 53 ATTFAATAFFGLLLGERTRVGFSLLGMAS 81 (92)
Q Consensus 53 sl~fv~t~l~~~~l~e~~~~~~~~~G~~L 81 (92)
.++.+++...|+.+.+.....|+....++
T Consensus 63 ~i~~i~g~~la~~l~~~~~~~~~~~~~~~ 91 (252)
T d2onkc1 63 LIAVIFGTPLAYILARKSFPGKSVVEGIV 91 (252)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 35556666667666554444454544443
No 8
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=5.20 E-value=3.1e+02 Score=17.19 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 046747 20 QYTVPFLLNLSASATFFAILS 40 (92)
Q Consensus 20 ~~~~p~~ln~~gS~~~~~~L~ 40 (92)
+|..+|.+-.||...|-|.|-
T Consensus 116 ~F~~GF~~Gg~GGa~fAy~Ll 136 (151)
T d1jb0l_ 116 QFTAGFFVGAMGSAFVAFFLL 136 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhchhhhccccHHHHHHHHH
Confidence 477888888999998886653
No 9
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=4.15 E-value=3.3e+02 Score=14.68 Aligned_cols=62 Identities=11% Similarity=-0.008 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhccCCceeehhhHHHHHHHHHHHHHHHhhhccc--cchhhHHHHHhhhhheee
Q 046747 28 NLSASATFFAILSHTPISLAVPVTNATTFAATAFFGLLLGERTR--VGFSLLGMASIVLGVWLC 89 (92)
Q Consensus 28 n~~gS~~~~~~L~~~dlSla~P~~nsl~fv~t~l~~~~l~e~~~--~~~~~~G~~LI~~Gv~L~ 89 (92)
-..++.++++.-...|=+--....+|+=|.+..++-.=.|+-.+ +.-|++.++.++.|+.+.
T Consensus 19 ~~~~s~~~~~~e~~~~~~~~~s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~ 82 (103)
T d1r3jc_ 19 LLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 82 (103)
T ss_dssp HHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcccCchhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHH
Confidence 34555555555544433222234467766665553321344332 355788888888887653
No 10
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.14 E-value=2.3e+02 Score=15.62 Aligned_cols=13 Identities=23% Similarity=0.217 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHH
Q 046747 17 VIWQYTVPFLLNL 29 (92)
Q Consensus 17 ~n~~~~~p~~ln~ 29 (92)
.-|.|+.+.+-|+
T Consensus 8 ~~w~yI~gMLtN~ 20 (74)
T d1ldda_ 8 RSLPFIEGMLTNL 20 (74)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 4577888888776
Done!