BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046748
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F3P|A Chain A, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
pdb|4F3P|B Chain B, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
Length = 249
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 61 DLEHGYLCGTMEALNVPMADTPVVTFWEGEIVDAKNYTFYTGKWEATPEDDIRHWTKFPS 120
+++ YL ++ M DTP V F+ N K P ++ FP
Sbjct: 159 NIDQAYLALEAGRVDAAMHDTPNVLFF------VNNEGKGRVKVAGAPVSGDKYGIGFPK 212
Query: 121 FAPLLSRVEADGGKSLDLSNYPYIFMRW 148
+PL+++V A+ + Y I+ +W
Sbjct: 213 GSPLVAKVNAELARMKADGRYAKIYKKW 240
>pdb|1VCJ|A Chain A, Influenza B Virus Neuraminidase Complexed With
1-(4-Carboxy-2-(3-
Pentylamino)phenyl)-5-Aminomethyl-5-Hydroxymethyl-
Pyrrolidin-2-One
Length = 389
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 16/121 (13%)
Query: 65 GYLCGTMEALNVPMADTPVVTFWEGEIVDAKNYTFYTGKWEATPEDDIRHWTKFPSFAP- 123
GY GT + N +V+ G+I +N F+ W + D R WT P
Sbjct: 64 GYYNGTRKDRNKLRH---LVSVKLGKIPTVENSIFHMAAWSGSACHDGREWTYIGVDGPD 120
Query: 124 --LLSRVEADGGKSLDLSNYPYIFMRWKEQYFVNVGTDCGLTIAGFYYVCFSCSDGSING 181
L +++ + +Y + +R +E +G DC L I +DGS +G
Sbjct: 121 NDALVKIKYGEAYTDTYHSYAHNILRTQESACNCIGGDCYLMI----------TDGSASG 170
Query: 182 F 182
Sbjct: 171 I 171
>pdb|1B9T|A Chain A, Novel Aromatic Inhibitors Of Influenza Virus Neuraminidase
Make Selective Interactions With Conserved Residues And
Water Molecules In The Active Site
pdb|1B9V|A Chain A, Novel Aromatic Inhibitors Of Influenza Virus Neuraminidase
Make Selective Interactions With Conserved Residues And
Water Molecules In Teh Active Site
pdb|1B9S|A Chain A, Novel Aromatic Inhibitors Of Influenza Virus Neuraminidase
Make Selective Interactions With Conserved Residues And
Water Molecules In The Active Site
pdb|1INV|A Chain A, A Sialic Acid Derived Phosphonate Analog Inhibits
Different Strains Of Influenza Virus Neuraminidase With
Different Efficiencies
pdb|1IVB|A Chain A, Structures Of Aromatic Inhibitors Of Influenza Virus
Neuraminidase
Length = 390
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 16/121 (13%)
Query: 65 GYLCGTMEALNVPMADTPVVTFWEGEIVDAKNYTFYTGKWEATPEDDIRHWTKFPSFAP- 123
GY GT + N +V+ G+I +N F+ W + D R WT P
Sbjct: 65 GYYNGTRKDRNKLRH---LVSVKLGKIPTVENSIFHMAAWSGSACHDGREWTYIGVDGPD 121
Query: 124 --LLSRVEADGGKSLDLSNYPYIFMRWKEQYFVNVGTDCGLTIAGFYYVCFSCSDGSING 181
L +++ + +Y + +R +E +G DC L I +DGS +G
Sbjct: 122 NDALVKIKYGEAYTDTYHSYAHNILRTQESACNCIGGDCYLMI----------TDGSASG 171
Query: 182 F 182
Sbjct: 172 I 172
>pdb|1INF|A Chain A, Influenza Virus BLEE40 NEURAMINIDASE COMPLEXED WITH
BANA113 Inhibitor
Length = 390
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 16/121 (13%)
Query: 65 GYLCGTMEALNVPMADTPVVTFWEGEIVDAKNYTFYTGKWEATPEDDIRHWTKFPSFAP- 123
GY GT + N +V+ G+I +N F+ W + D R WT P
Sbjct: 65 GYYNGTRKDRNKLRH---LVSVKLGKIPTVENSIFHMAAWSGSACHDGREWTYIGVDGPD 121
Query: 124 --LLSRVEADGGKSLDLSNYPYIFMRWKEQYFVNVGTDCGLTIAGFYYVCFSCSDGSING 181
L +++ + +Y + +R +E +G DC L I +DGS +G
Sbjct: 122 NDALVKIKYGEAYTDTYHSYAHNILRTQESACNCIGGDCYLMI----------TDGSASG 171
Query: 182 F 182
Sbjct: 172 I 172
>pdb|1NSB|A Chain A, The 2.2 Angstroms Resolution Crystal Structure Of
Influenza B Neuraminidase And Its Complex With Sialic
Acid
pdb|1NSB|B Chain B, The 2.2 Angstroms Resolution Crystal Structure Of
Influenza B Neuraminidase And Its Complex With Sialic
Acid
pdb|1NSC|A Chain A, Influenza B Virus Neuraminidase Can Synthesize Its Own
Inhibitor
pdb|1NSC|B Chain B, Influenza B Virus Neuraminidase Can Synthesize Its Own
Inhibitor
pdb|1NSD|A Chain A, Influenza B Virus Neuraminidase Can Synthesize Its Own
Inhibitor
pdb|1NSD|B Chain B, Influenza B Virus Neuraminidase Can Synthesize Its Own
Inhibitor
pdb|1A4G|A Chain A, Influenza Virus BBEIJING187 NEURAMINIDASE COMPLEXED WITH
ZANAMIVIR
pdb|1A4G|B Chain B, Influenza Virus BBEIJING187 NEURAMINIDASE COMPLEXED WITH
ZANAMIVIR
pdb|1A4Q|A Chain A, Influenza Virus B/beijing/1/87 Neuraminidase Complexed
With Dihydropyran-phenethyl-propyl-carboxamide
pdb|1A4Q|B Chain B, Influenza Virus B/beijing/1/87 Neuraminidase Complexed
With Dihydropyran-phenethyl-propyl-carboxamide
Length = 390
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 16/121 (13%)
Query: 65 GYLCGTMEALNVPMADTPVVTFWEGEIVDAKNYTFYTGKWEATPEDDIRHWTKFPSFAP- 123
GY GT E N +++ G+I +N F+ W + D R WT P
Sbjct: 65 GYYNGTREDRNKLRH---LISVKLGKIPTVENSIFHMAAWSGSACHDGREWTYIGVDGPD 121
Query: 124 --LLSRVEADGGKSLDLSNYPYIFMRWKEQYFVNVGTDCGLTIAGFYYVCFSCSDGSING 181
L +++ + +Y +R +E +G DC L I +DGS +G
Sbjct: 122 SNALIKIKYGEAYTDTYHSYANNILRTQESACNCIGGDCYLMI----------TDGSASG 171
Query: 182 F 182
Sbjct: 172 I 172
>pdb|1KKT|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KKT|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRE|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRE|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|A Chain A, Structure Of P. Citrinum Alpha 1,2-mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|B Chain B, Structure Of P. Citrinum Alpha 1,2-mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
Length = 511
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 91 IVDAKNYTFYTGKWEATPEDDIRHWTKFPSFAPLLSRVEADGGKSLDLSN 140
+ D K + Y +W E I+H P P L+ + + ++ DLS+
Sbjct: 278 VYDPKRFETYKDRWVLAAESTIKHLKSHPKSRPDLTFLSSYSNRNYDLSS 327
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 19/83 (22%)
Query: 22 SSPPICS----LLTVGQAFSGTQNVSNLQKEEAWRVNVRIQGCDLEHGYLCGTMEALNVP 77
SSPP C L SGT ++S L++++ WR + I+ L G E LN P
Sbjct: 70 SSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQI------LLGIQELLNEP 123
Query: 78 MADTPVVTFWEGEIVDAKNYTFY 100
P A+ YT Y
Sbjct: 124 NIQDP---------AQAEAYTIY 137
>pdb|2RI8|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With
Glycerol
pdb|2RI8|B Chain B, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With
Glycerol
pdb|2RI9|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase In Complex With
A Substrate Analog
pdb|2RI9|B Chain B, Penicillium Citrinum Alpha-1,2-Mannosidase In Complex With
A Substrate Analog
Length = 475
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 91 IVDAKNYTFYTGKWEATPEDDIRHWTKFPSFAPLLSRVEADGGKSLDLSN 140
+ D K + Y +W E I+H P P L+ + + ++ DLS+
Sbjct: 243 VYDPKRFETYKDRWVLAAESTIKHLKSHPKSRPDLTFLSSYSNRNYDLSS 292
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 19/83 (22%)
Query: 22 SSPPICS----LLTVGQAFSGTQNVSNLQKEEAWRVNVRIQGCDLEHGYLCGTMEALNVP 77
SSPP C L SGT +S L++++ WR + I+ L G E LN P
Sbjct: 70 SSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQI------LLGIQELLNEP 123
Query: 78 MADTPVVTFWEGEIVDAKNYTFY 100
P A+ YT Y
Sbjct: 124 NIQDP---------AQAEAYTIY 137
>pdb|3RGB|A Chain A, Crystal Structure Of Particulate Methane Monooxygenase
From Methylococcus Capsulatus (Bath)
pdb|3RGB|E Chain E, Crystal Structure Of Particulate Methane Monooxygenase
From Methylococcus Capsulatus (Bath)
pdb|3RGB|I Chain I, Crystal Structure Of Particulate Methane Monooxygenase
From Methylococcus Capsulatus (Bath)
Length = 414
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 84 VTFWEGEIVDAKNYT-----FYTGKWEATPEDDIRHWTKFPSFAPLLSRVEADGGKSL 136
VT G+ VD +NY F+ W A I +W++ P F P L V+A L
Sbjct: 170 VTTLTGQTVDLENYNEGNTYFWHAFWFAIGVAWIGYWSRRPIFIPRLLMVDAGRADEL 227
>pdb|1YEW|A Chain A, Crystal Structure Of Particulate Methane Monooxygenase
pdb|1YEW|E Chain E, Crystal Structure Of Particulate Methane Monooxygenase
pdb|1YEW|I Chain I, Crystal Structure Of Particulate Methane Monooxygenase
Length = 382
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 84 VTFWEGEIVDAKNYT-----FYTGKWEATPEDDIRHWTKFPSFAPLLSRVEADGGKSL 136
VT G+ VD +NY F+ W A I +W++ P F P L V+A L
Sbjct: 138 VTTLTGQTVDLENYNEGNTYFWHAFWFAIGVAWIGYWSRRPIFIPRLLMVDAGRADEL 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,363,945
Number of Sequences: 62578
Number of extensions: 268638
Number of successful extensions: 547
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 14
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)