BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046748
(188 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CPY6|GID4_MOUSE Glucose-induced degradation protein 4 homolog OS=Mus musculus
GN=Gid4 PE=2 SV=1
Length = 217
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 98/200 (49%), Gaps = 17/200 (8%)
Query: 1 MPVRVA-ESSAPSQVSGAHSEESSPPI--------CSLLTVGQAFSGTQNVSNLQKEEAW 51
MPVR A + + A S PPI SLL G F G Q K ++
Sbjct: 1 MPVRTECPPPAGASTTSAASLIPPPPINTQQPGVATSLLYSGSKFRGHQK----SKGNSY 56
Query: 52 RVNVRIQGCDLEHGYLCGTMEALNVPMADTPVVTFWEGEIVDAKNYTFYTGKWEATPEDD 111
V V +Q D + YLCG ++ + + TF+EGEI+ +K + F T KW+A + D
Sbjct: 57 DVEVVLQHVDTGNSYLCGYLKIKGLTEEYPTLTTFFEGEII-SKKHPFLTRKWDADEDVD 115
Query: 112 IRHWTKFPSFAPLLSRVEADGGKSLDLSNYPYIFMRWKEQYFV---NVGTDCGLTIAGFY 168
+HW KF +F +D +L N Y+FMRWKEQ+ V + G + AGFY
Sbjct: 116 RKHWGKFLAFYQYAKSFNSDDFDYEELKNGDYVFMRWKEQFLVPDHTIKDISGASFAGFY 175
Query: 169 YVCFSCSDGSINGFYYDPNS 188
Y+CF S SI G+YY +S
Sbjct: 176 YICFQKSAASIEGYYYHRSS 195
>sp|Q8IVV7|GID4_HUMAN Glucose-induced degradation protein 4 homolog OS=Homo sapiens
GN=GID4 PE=2 SV=1
Length = 300
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 86/164 (52%), Gaps = 8/164 (4%)
Query: 28 SLLTVGQAFSGTQNVSNLQKEEAWRVNVRIQGCDLEHGYLCGTMEALNVPMADTPVVTFW 87
SLL G F G Q K ++ V V +Q D + YLCG ++ + + TF+
Sbjct: 120 SLLYSGSKFRGHQK----SKGNSYDVEVVLQHVDTGNSYLCGYLKIKGLTEEYPTLTTFF 175
Query: 88 EGEIVDAKNYTFYTGKWEATPEDDIRHWTKFPSFAPLLSRVEADGGKSLDLSNYPYIFMR 147
EGEI+ +K + F T KW+A + D +HW KF +F +D +L N Y+FMR
Sbjct: 176 EGEII-SKKHPFLTRKWDADEDVDRKHWGKFLAFYQYAKSFNSDDFDYEELKNGDYVFMR 234
Query: 148 WKEQYFV---NVGTDCGLTIAGFYYVCFSCSDGSINGFYYDPNS 188
WKEQ+ V + G + AGFYY+CF S SI G+YY +S
Sbjct: 235 WKEQFLVPDHTIKDISGASFAGFYYICFQKSAASIEGYYYHRSS 278
>sp|Q9UT04|YLWD_SCHPO Uncharacterized protein P8A3.13c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAP8A3.13c PE=4 SV=1
Length = 547
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 76/164 (46%), Gaps = 10/164 (6%)
Query: 33 GQAFSGTQNVSNL----QKEEAWRVNVRIQGCDLEHGYLCGTMEA-LNVPMADTPVVTFW 87
G F G Q++S L +E W V+V I D + L G + A + + T W
Sbjct: 359 GLQFGGVQSISGLPPLTNPKERWIVDVSIHVVDYKRRALEGQLNAQARSSDPSSTISTAW 418
Query: 88 EGEIVD-AKNYTFYTGKWEATPEDDIRHWTKFPSFAPLLSRVEAD---GGKSLDLSNYPY 143
GEI+D ++ F T KW A E D+ +W K F + + + K L Y
Sbjct: 419 TGEILDFSEKLNFATEKWSAPLEIDVCYWRKLAPFQNMDTNTFLETITNPKKLYKICQKY 478
Query: 144 IFMRWKEQYFVNVGTDCGLT-IAGFYYVCFSCSDGSINGFYYDP 186
IFMRWK+ + TD + I GFY+ C +G I G+YYDP
Sbjct: 479 IFMRWKDMLILKDQTDTSESRITGFYFCCLCRENGYIQGYYYDP 522
>sp|Q10079|YANE_SCHPO Uncharacterized protein C3H1.14 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC3H1.14 PE=4 SV=2
Length = 195
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 27 CSLLTVGQAFSGTQN-VSNLQKEEAWRVNVRIQGCDLEHGYLCGTMEALNVPMADTPVVT 85
CS L G F G Q VS+ E V+V I +L LCG + +T + T
Sbjct: 4 CSFLRNGAKFQGKQKGVSSSTLE----VHVTILHVNLAKSMLCGFIHVSYTSPNNTSLTT 59
Query: 86 FWEGEIVDAKNYTFYTG--KWEATPEDDIRHWTKFPSFAPLLSRVEADGGKSLDLSNYPY 143
++E EI+ + +TF T +W A+ E D RHW + + + + D +
Sbjct: 60 YFEAEIIGNR-FTFETKWPEWGASEEIDNRHWKRLGALKSNGKDIPLRLIQPYDPLSRET 118
Query: 144 IFMRWKEQYFVNVGTD---------CGLTIAGFYYVCFSCSDGSINGFYY 184
++MRWKE ++ D G++ GFYY+ FS S G I G+YY
Sbjct: 119 VYMRWKELAMLDKTVDYQNHNQSFPFGISYEGFYYISFSQSTGKIKGYYY 168
>sp|P53242|YG29_YEAST Uncharacterized protein YGR066C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YGR066C PE=4 SV=1
Length = 292
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 37/191 (19%)
Query: 29 LLTVGQAFSGTQNVSNLQKEEAWRVNVRIQGCDLE--------HGYLCGTMEALNVPMAD 80
L G F G+Q+ K + V V+I +L ++ GT N+
Sbjct: 78 FLRPGLRFGGSQS----SKYTYYTVEVKIDTVNLPLYKDSRSLDPHVTGTFTIKNLTPVL 133
Query: 81 TPVVTFWEGEIVDAKNYTFYTGKWEATP---------EDDIRHWTKFPSF-APLLSRVEA 130
VVT +EG +++ + + W A E D HW +F F + S E
Sbjct: 134 DKVVTLFEGYVINYNQFPLCSLHWPAEETLDPYMAQRESDCSHWKRFGHFGSDNWSLTER 193
Query: 131 DGGK----SLDLSNYPYIFMRWKEQYFV------NVGTDC-----GLTIAGFYYVCFSCS 175
+ G+ S + N YI+++WKE++ + N+ D G + GFYYVC
Sbjct: 194 NFGQYNHESAEFMNQRYIYLKWKERFLLDDEEQENLMLDDNHHLEGASFEGFYYVCLDQL 253
Query: 176 DGSINGFYYDP 186
GS+ G+YY P
Sbjct: 254 TGSVEGYYYHP 264
>sp|P38263|GID4_YEAST Vacuolar import and degradation protein 24 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VID24 PE=1
SV=1
Length = 362
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 72/196 (36%), Gaps = 61/196 (31%)
Query: 49 EAWRVNVRIQGCDLEHG-------YLCGTMEALNVPMADTPVVTFWEGEIVDAKNYTFYT 101
+ ++V V ++ DL +L G + + + T++E V+ K F +
Sbjct: 138 KRYQVTVNLKTVDLPKKDCTSLSPHLSGFLSIRGLTNQHPEISTYFEAYAVNHKELGFLS 197
Query: 102 GKWE---------ATPEDDIRHWTKFPSFAPLLSRVEADGGKSLD--------------- 137
W+ AT + D+ HW FPSF L + +G S D
Sbjct: 198 SSWKDEPVLNEFKATDQTDLEHWINFPSFRQLFLMSQKNGLNSTDDNGTTNAAKKLPPQQ 257
Query: 138 ---------------------LSNY---PYIFMRWKEQYFV-----NVGTDCGLTIAGFY 168
NY +IFM+WKE++ V G D G + GFY
Sbjct: 258 LPTTPSADAGNISRIFSQEKQFDNYLNERFIFMKWKEKFLVPDALLMEGVD-GASYDGFY 316
Query: 169 YVCFSCSDGSINGFYY 184
Y+ G+I GFYY
Sbjct: 317 YIVHDQVTGNIQGFYY 332
>sp|Q66221|MVP_YOMV Movement protein OS=Youcai mosaic virus GN=MP PE=2 SV=1
Length = 265
Score = 37.0 bits (84), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 47 KEEAWRVNVRIQGCDLEHGYLCGTMEALNVPMADTPVVTFWEGEIVDAKNYTFYTGKWEA 106
K + W+V+VRIQ +E G+ +E ++V M VV E V A N G +E
Sbjct: 129 KRKPWQVHVRIQNLKIEAGWQPLALEVVSVAMVTNNVVVKGLREKVIAVNDPNVEG-FEG 187
Query: 107 TPEDDIRHWTKFPSFAPLLSRVEADGGKSLDLSNYPY 143
+D + F + + + GG+ ++ + Y Y
Sbjct: 188 VVDDFVDSVAAFKAIDSFRKKKKRIGGRDVNSNKYRY 224
>sp|Q9QDI8|MVP_RMV Movement protein OS=Ribgrass mosaic virus GN=MP PE=2 SV=1
Length = 265
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 47 KEEAWRVNVRIQGCDLEHGYLCGTMEALNVPMADTPVVTFWEGEIVDAKNYTFYTGKWEA 106
K + W+V+VRIQ +E G+ +E ++V M VV E V A N G +E
Sbjct: 129 KRKPWQVHVRIQNLKIEAGWQPLALEVVSVAMVTNNVVVKGLREKVIAVNDPNVEG-FEG 187
Query: 107 TPEDDIRHWTKFPSFAPLLSRVEADGGKSLDLSNYPY 143
+D + F + + + GG+ ++ + Y Y
Sbjct: 188 VVDDFVDSVAAFKAIDSFRKKKKKIGGRDVNNNKYRY 224
>sp|Q3MCE0|SYS_ANAVT Serine--tRNA ligase OS=Anabaena variabilis (strain ATCC 29413 / PCC
7937) GN=serS PE=3 SV=1
Length = 426
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 63 EHGYLCGTMEALNVPMADTPVVTFWEGEIVDAKNYTFY 100
E + C E +P A+ PV + GEI+ A+N Y
Sbjct: 220 EESFKCADDELWLIPTAEVPVTNLYRGEILAAENLPIY 257
>sp|Q8YQ59|SYS_NOSS1 Serine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=serS PE=3 SV=1
Length = 426
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 63 EHGYLCGTMEALNVPMADTPVVTFWEGEIVDAKNYTFY 100
E + C E +P A+ PV + GEI+ A+N Y
Sbjct: 220 EESFKCADDELWLIPTAEVPVTNLYRGEILAAENLPIY 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,538,630
Number of Sequences: 539616
Number of extensions: 3146927
Number of successful extensions: 6132
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6110
Number of HSP's gapped (non-prelim): 15
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)