Query 046748
Match_columns 188
No_of_seqs 117 out of 167
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 04:07:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09783 Vac_ImportDeg: Vacuol 100.0 3.9E-78 8.4E-83 499.0 18.7 157 28-188 1-164 (176)
2 KOG4635 Vacuolar import and de 100.0 4.1E-58 8.9E-63 398.7 11.9 160 24-187 83-251 (274)
3 COG5073 VID24 Vacuolar import 100.0 6.1E-58 1.3E-62 393.1 12.5 160 24-187 73-248 (272)
4 KOG4635 Vacuolar import and de 99.5 5.8E-15 1.3E-19 129.3 4.0 127 34-187 13-139 (274)
5 TIGR03836 termin_org_HMW1 cyta 55.9 9 0.00019 28.4 2.0 16 167-186 44-59 (82)
6 PF09737 Det1: De-etiolated pr 35.0 37 0.0008 32.1 3.1 47 137-185 193-240 (407)
7 cd01759 PLAT_PL PLAT/LH2 domai 34.3 97 0.0021 24.0 4.8 47 50-101 2-50 (113)
8 PF14366 DUF4410: Domain of un 30.7 1.4E+02 0.003 23.5 5.3 42 47-90 60-114 (134)
9 PF14230 DUF4333: Domain of un 30.2 84 0.0018 22.6 3.6 29 29-61 51-79 (80)
10 PF11447 DUF3201: Protein of u 30.2 41 0.0009 27.7 2.2 32 141-172 34-73 (150)
11 PF07889 DUF1664: Protein of u 28.5 24 0.00051 28.2 0.5 9 142-150 19-27 (126)
12 PF05428 CRF-BP: Corticotropin 20.4 1.7E+02 0.0038 26.9 4.5 30 52-95 92-121 (311)
No 1
>PF09783 Vac_ImportDeg: Vacuolar import and degradation protein; InterPro: IPR018618 Members of this family are involved in the negative regulation of gluconeogenesis. They are required for both proteosome-dependent and vacuolar catabolite degradation of fructose-1,6-bisphosphatase (FBPase), where they probably regulate FBPase targeting from the FBPase-containing vesicles to the vacuole [, ].
Probab=100.00 E-value=3.9e-78 Score=499.03 Aligned_cols=157 Identities=43% Similarity=0.778 Sum_probs=148.7
Q ss_pred CCCCCCCeeeeEeecCCCCCCCceEEEEEEeeecCCCceeEEEEEEecCCCCCCCeeeeEeEEEecCCCCceeeCCCCCC
Q 046748 28 SLLTVGQAFSGTQNVSNLQKEEAWRVNVRIQGCDLEHGYLCGTMEALNVPMADTPVVTFWEGEIVDAKNYTFYTGKWEAT 107 (188)
Q Consensus 28 s~L~pGs~F~G~Q~ss~~~k~~~y~V~V~I~~VDl~~~~L~G~l~i~gLt~~~~~iTTfFEGEII~~k~~~F~T~~W~A~ 107 (188)
|||+||++|+|+|+| ++++|+|+|+|++|||++++|||+|+|+|||+++|+|||||||||||+++|+|+|++|+|+
T Consensus 1 ~~L~pg~~F~G~Q~S----~~~~y~V~V~i~~VDl~~~~l~G~l~i~glt~~~p~itTfFeGEII~~~~~~F~T~~W~a~ 76 (176)
T PF09783_consen 1 SYLRPGSRFVGTQQS----GREKYPVKVTIKTVDLPNSHLCGYLEIKGLTDDHPEITTFFEGEIIGFNKHSFLTEKWGAN 76 (176)
T ss_pred CcccCCCEEEeEecC----CCcceEEEEEEEEecCCcCEEEEEEEEecCCCCCCcEEEEEeeEEecCCCCceeccccCCC
Confidence 699999999999996 4899999999999999999999999999999999999999999999977899999999999
Q ss_pred ccchHhhhcCCCCChhchhhhhc----CCCcccccCCCCeeeeeeeeeeeeec---CCCCCceeeeeEEEEEeccCCeEE
Q 046748 108 PEDDIRHWTKFPSFAPLLSRVEA----DGGKSLDLSNYPYIFMRWKEQYFVNV---GTDCGLTIAGFYYVCFSCSDGSIN 180 (188)
Q Consensus 108 ~~~D~~HW~kf~~F~~l~~~~~~----d~~~~~~~~~~~~IfMRWKE~Flv~~---~~i~GASf~GFYYIc~~~~~G~I~ 180 (188)
+++|++||+|||||+++..+... +.....+++|++||||||||+||||+ ++|+||||||||||||||++|+|+
T Consensus 77 ~~~D~~hW~kf~~f~~~~~~~~~~~~~~~~~~~~~~~~~~IfMRWKE~Flvpd~~~~~i~GaSf~GFYYI~~~~~~G~I~ 156 (176)
T PF09783_consen 77 EEIDLEHWSKFPPFRPLSKDENLQKLSDDFDYEDLLNQRYIFMRWKERFLVPDHRVKSISGASFEGFYYICLDRSTGSIE 156 (176)
T ss_pred cchhhHHHhcCCcchhhhhhhccccccCCccchhhcCCCcEEEEEEeEEEcccccCCCcCceeEeeEEEEEEEccCCeEE
Confidence 99999999999999999887766 55566788899999999999999998 689999999999999999999999
Q ss_pred EEeeCCCC
Q 046748 181 GFYYDPNS 188 (188)
Q Consensus 181 G~Yyh~~S 188 (188)
||||||+|
T Consensus 157 G~Yyh~~s 164 (176)
T PF09783_consen 157 GYYYHPNS 164 (176)
T ss_pred EEEECCCC
Confidence 99999987
No 2
>KOG4635 consensus Vacuolar import and degradation protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-58 Score=398.67 Aligned_cols=160 Identities=39% Similarity=0.755 Sum_probs=149.1
Q ss_pred CCCCCCCCCCCeeeeEeecCCCCCCCceEEEEEEeeecCCCceeEEEEEEecCCCCCCCeeeeEeEEEecCCCCceeeC-
Q 046748 24 PPICSLLTVGQAFSGTQNVSNLQKEEAWRVNVRIQGCDLEHGYLCGTMEALNVPMADTPVVTFWEGEIVDAKNYTFYTG- 102 (188)
Q Consensus 24 ~~~~s~L~pGs~F~G~Q~ss~~~k~~~y~V~V~I~~VDl~~~~L~G~l~i~gLt~~~~~iTTfFEGEII~~k~~~F~T~- 102 (188)
...++|||||++|.|.|.+ ++++|.|+|.|++||+..++|||+|+|+|||+.++.||||||||||+.|+++|+|+
T Consensus 83 ~~~~~~LR~gskF~G~Q~s----~~~~y~V~V~id~Vd~~~~~lcG~~~i~~lT~~~~~ltT~FegeII~~k~~~f~te~ 158 (274)
T KOG4635|consen 83 GTRTDFLRSGSKFRGFQKS----KKESYFVEVNIDVVDLPKSYLCGTLSIKGLTDFYPTLTTYFEGEIISSKKLPFLTEV 158 (274)
T ss_pred ccchhhhcCcccccccccC----CCceEEEEEEEEEeecccceeEEEEEecccCCCCCccceeeeeEEeccccccceecc
Confidence 4567999999999999984 57999999999999999999999999999999999999999999999878999999
Q ss_pred -CCCCCccchHhhhcCCCCChhchhhhhcCCCcccccC---CCCeeeeeeeeeeeeec----CCCCCceeeeeEEEEEec
Q 046748 103 -KWEATPEDDIRHWTKFPSFAPLLSRVEADGGKSLDLS---NYPYIFMRWKEQYFVNV----GTDCGLTIAGFYYVCFSC 174 (188)
Q Consensus 103 -~W~A~~~~D~~HW~kf~~F~~l~~~~~~d~~~~~~~~---~~~~IfMRWKE~Flv~~----~~i~GASf~GFYYIc~~~ 174 (188)
+|+|++++|+.||+||++|+.+......++....|.. +++||||||||+||||+ +.+.||||+||||||++|
T Consensus 159 ~e~~as~e~D~~hWkkf~~F~~~~~s~~~~~~~~~d~~~~~~~~~I~MKwKe~fll~d~~~~~~~~gas~eGFYy~c~~q 238 (274)
T KOG4635|consen 159 FEWDASDEIDLLHWKKFPAFRNVAKSENLNGFGSYDTEYSENQNYIFMKWKELFLLPDSHLQKDISGASIEGFYYICFDQ 238 (274)
T ss_pred cccCCccccchHHHhhchhhhhhhhccccccCCCccchhhcccccEEEEehhhccCCcccccccCCCcccccEEEEEEec
Confidence 9999999999999999999999887777776666666 99999999999999996 457899999999999999
Q ss_pred cCCeEEEEeeCCC
Q 046748 175 SDGSINGFYYDPN 187 (188)
Q Consensus 175 ~~G~I~G~Yyh~~ 187 (188)
++|.|+|+|||++
T Consensus 239 ~~g~ieG~YYh~~ 251 (274)
T KOG4635|consen 239 STGSIEGYYYHPD 251 (274)
T ss_pred cccccceeEeccc
Confidence 9999999999986
No 3
>COG5073 VID24 Vacuolar import and degradation protein [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.1e-58 Score=393.15 Aligned_cols=160 Identities=34% Similarity=0.650 Sum_probs=137.5
Q ss_pred CCCCCCCCCCCeeeeEeecCCCCCCCceEEEEEEeeecCCC------ceeEEEEEEecCCCCCCCeeeeEeEEEecCCCC
Q 046748 24 PPICSLLTVGQAFSGTQNVSNLQKEEAWRVNVRIQGCDLEH------GYLCGTMEALNVPMADTPVVTFWEGEIVDAKNY 97 (188)
Q Consensus 24 ~~~~s~L~pGs~F~G~Q~ss~~~k~~~y~V~V~I~~VDl~~------~~L~G~l~i~gLt~~~~~iTTfFEGEII~~k~~ 97 (188)
...|+|||||++|.|.| ++ +...|+|+|+|.+|||+. .+|||+|+|+|||+.++.|||||||||||.+++
T Consensus 73 ~~~~~~Lr~G~qF~G~Q-is---~~~~~~v~v~i~~Vdl~~kd~~sl~~l~G~l~i~~lT~~~~~ltTyFEgeiI~~n~~ 148 (272)
T COG5073 73 TRRSGFLRNGAQFGGVQ-IS---GYPPLTVEVNIDTVDLPKKDDYSLPHLCGTLNIQNLTDPSSTLTTYFEGEIIGFNKL 148 (272)
T ss_pred cchhhhccCccccccEe-cc---CCcceEEEEEEEEEeccccccccccceeeEEEEeccCCCcchheeeeeeeecccccc
Confidence 34689999999999999 54 357899999999999999 999999999999999999999999999997789
Q ss_pred ceeeCCCC---CCccchHhhhcCCCCChhchhhh-hc--CCCcccccCCCCeeeeeeeeeeeeec----CCCCCceeeee
Q 046748 98 TFYTGKWE---ATPEDDIRHWTKFPSFAPLLSRV-EA--DGGKSLDLSNYPYIFMRWKEQYFVNV----GTDCGLTIAGF 167 (188)
Q Consensus 98 ~F~T~~W~---A~~~~D~~HW~kf~~F~~l~~~~-~~--d~~~~~~~~~~~~IfMRWKE~Flv~~----~~i~GASf~GF 167 (188)
+|.|++|. |++++|++||+|||+|+.-...+ .+ .......+.|++||||||||+||||+ +++.||||+||
T Consensus 149 ~F~T~~W~~~~a~~eiD~~HWkrf~~fr~dn~t~ie~i~~q~~~~~~~~qryIymkWKE~flL~D~l~~d~~~GaS~dGF 228 (272)
T COG5073 149 PFATEKWSMAPASEEIDVCHWKRFPPFRMDNGTFIERIFNQKSKDYKINQRYIYMKWKELFLLPDPLQLDTISGASIDGF 228 (272)
T ss_pred ccccccccccCcccchhhHHHHhcccccccCCcccceeecCccchhhhhheeeeeeehhhhccCchHhhcCCCCceeccE
Confidence 99999776 77899999999999999210000 00 00113456789999999999999998 46799999999
Q ss_pred EEEEEeccCCeEEEEeeCCC
Q 046748 168 YYVCFSCSDGSINGFYYDPN 187 (188)
Q Consensus 168 YYIc~~~~~G~I~G~Yyh~~ 187 (188)
||||+||+||.|+||||||+
T Consensus 229 YY~c~~q~tG~iqGyYYh~~ 248 (272)
T COG5073 229 YYCCLDQETGYIQGYYYHPK 248 (272)
T ss_pred EEEEEeccCCeeeeEEeccc
Confidence 99999999999999999995
No 4
>KOG4635 consensus Vacuolar import and degradation protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=5.8e-15 Score=129.30 Aligned_cols=127 Identities=50% Similarity=0.698 Sum_probs=113.6
Q ss_pred CeeeeEeecCCCCCCCceEEEEEEeeecCCCceeEEEEEEecCCCCCCCeeeeEeEEEecCCCCceeeCCCCCCccchHh
Q 046748 34 QAFSGTQNVSNLQKEEAWRVNVRIQGCDLEHGYLCGTMEALNVPMADTPVVTFWEGEIVDAKNYTFYTGKWEATPEDDIR 113 (188)
Q Consensus 34 s~F~G~Q~ss~~~k~~~y~V~V~I~~VDl~~~~L~G~l~i~gLt~~~~~iTTfFEGEII~~k~~~F~T~~W~A~~~~D~~ 113 (188)
+-|.|+| +....+..+|.+.|.|+..+++.+.+||.+++-+.+...+++.||.||+|++.|+..+.|++| +....+|+
T Consensus 13 ~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kn~~~~t~~~-~~~~~~LR 90 (274)
T KOG4635|consen 13 SAFSGTQ-VFNLQKAERWLNNVQIQGSALEHSYSSGTTEAPNVPMCDTPVITFEEGKIVDGKNPTIYTSSY-GTRTDFLR 90 (274)
T ss_pred ccccccc-ccccCHHHhccccccccccccccccCCCcccCCCCCCCCCCeeEeeccccccccCcceecccc-ccchhhhc
Confidence 3477888 445567899999999999999999999999999999999999999999999999999999999 88899999
Q ss_pred hhcCCCCChhchhhhhcCCCcccccCCCCeeeeeeeeeeeeecCCCCCceeeeeEEEEEeccCCeEEEEeeCCC
Q 046748 114 HWTKFPSFAPLLSRVEADGGKSLDLSNYPYIFMRWKEQYFVNVGTDCGLTIAGFYYVCFSCSDGSINGFYYDPN 187 (188)
Q Consensus 114 HW~kf~~F~~l~~~~~~d~~~~~~~~~~~~IfMRWKE~Flv~~~~i~GASf~GFYYIc~~~~~G~I~G~Yyh~~ 187 (188)
||+||+.|.. +|||++.|.|..+.+....+ |||...+-+.+++.|+...
T Consensus 91 ~gskF~G~Q~-----------------------s~~~~y~V~V~id~Vd~~~~--~lcG~~~i~~lT~~~~~lt 139 (274)
T KOG4635|consen 91 SGSKFRGFQK-----------------------SKKESYFVEVNIDVVDLPKS--YLCGTLSIKGLTDFYPTLT 139 (274)
T ss_pred Cccccccccc-----------------------CCCceEEEEEEEEEeecccc--eeEEEEEecccCCCCCccc
Confidence 9999999962 99999999987766655555 9999999999999998764
No 5
>TIGR03836 termin_org_HMW1 cytadherence high molecular weight protein 1 N-terminal region. This model describes the N-terminal region of the Mycoplasma cytadherence protein HMW1, up to but not including the first EAGR box domain. The apparent orthologs in different Mycoplasma species differ profoundly in archictecture C-terminally to the region described here.
Probab=55.95 E-value=9 Score=28.36 Aligned_cols=16 Identities=50% Similarity=1.115 Sum_probs=13.2
Q ss_pred eEEEEEeccCCeEEEEeeCC
Q 046748 167 FYYVCFSCSDGSINGFYYDP 186 (188)
Q Consensus 167 FYYIc~~~~~G~I~G~Yyh~ 186 (188)
=|||.+|..|| .||+|
T Consensus 44 gYYIafn~Etg----vyydP 59 (82)
T TIGR03836 44 GYYIAFNPETG----VYYDP 59 (82)
T ss_pred EEEEEecCCCc----eEecC
Confidence 39999999985 67776
No 6
>PF09737 Det1: De-etiolated protein 1 Det1; InterPro: IPR019138 This entry represents Det1 family proteins []. Det1 (de-etiolated-1) is an essential negative regulator of plant light responses, and it is a component of the Arabidopsis CDD complex containing DDB1 and COP10 ubiquitin E2 variant. Mammalian Det1 forms stable DDD-E2 complexes, consisting of DDB1, DDA1 (DET1, DDB1 Associated 1), is a member of the UBE2E group of canonical ubiquitin conjugating enzymes and modulates Cul4A function [].
Probab=35.03 E-value=37 Score=32.14 Aligned_cols=47 Identities=13% Similarity=0.311 Sum_probs=33.1
Q ss_pred ccCCCCeeeeeeeeeeeeecCC-CCCceeeeeEEEEEeccCCeEEEEeeC
Q 046748 137 DLSNYPYIFMRWKEQYFVNVGT-DCGLTIAGFYYVCFSCSDGSINGFYYD 185 (188)
Q Consensus 137 ~~~~~~~IfMRWKE~Flv~~~~-i~GASf~GFYYIc~~~~~G~I~G~Yyh 185 (188)
.+++.++++.||+-.=.++.++ +.+. ..=.|+++|-.+++|.|.|-.
T Consensus 193 QlLD~~hLLIky~s~D~~~~r~~d~~~--~~sffvvYn~~t~eV~~vyen 240 (407)
T PF09737_consen 193 QLLDEDHLLIKYGSEDVVTLRVSDPNS--QPSFFVVYNMETTEVLGVYEN 240 (407)
T ss_pred hhcchhheeeeeccccceeeccCCCCC--CceEEEEEeeccceEEEEEcC
Confidence 5677888888886555554322 2211 556799999999999999853
No 7
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=34.29 E-value=97 Score=24.05 Aligned_cols=47 Identities=17% Similarity=0.358 Sum_probs=28.4
Q ss_pred ceEEEEEEeeecCCCceeEEEEEE--ecCCCCCCCeeeeEeEEEecCCCCceee
Q 046748 50 AWRVNVRIQGCDLEHGYLCGTMEA--LNVPMADTPVVTFWEGEIVDAKNYTFYT 101 (188)
Q Consensus 50 ~y~V~V~I~~VDl~~~~L~G~l~i--~gLt~~~~~iTTfFEGEII~~k~~~F~T 101 (188)
+|+|+|++-+=+- +.|+|.| .|--. ...=.-++.|+|-.++.|+|+=
T Consensus 2 ~Yqv~V~~s~~~~----~~g~~~vsL~G~~g-~s~~~~i~~g~l~pg~tys~li 50 (113)
T cd01759 2 RYKVSVTLSGKKK----VTGTILVSLYGNKG-NTRQYEIFKGTLKPGNTYSAFI 50 (113)
T ss_pred eEEEEEEEecccc----cCceEEEEEEcCCC-CccceEEEeeeecCCCEEEEEE
Confidence 6999998866332 5555554 23322 2222345688888888888873
No 8
>PF14366 DUF4410: Domain of unknown function (DUF4410)
Probab=30.75 E-value=1.4e+02 Score=23.50 Aligned_cols=42 Identities=12% Similarity=0.252 Sum_probs=31.8
Q ss_pred CCCceEEEEEEeeecCCC-------------ceeEEEEEEecCCCCCCCeeeeEeEE
Q 046748 47 KEEAWRVNVRIQGCDLEH-------------GYLCGTMEALNVPMADTPVVTFWEGE 90 (188)
Q Consensus 47 k~~~y~V~V~I~~VDl~~-------------~~L~G~l~i~gLt~~~~~iTTfFEGE 90 (188)
+.+.|.|+++|.++|.-+ +.|.+..++.+|+. .++.- =|+.+
T Consensus 60 ~~~~~~v~~~~~~~d~Gn~~~R~~iGfGAG~a~v~~~v~~~d~~~-~~~~~-~~~~~ 114 (134)
T PF14366_consen 60 PQNGLIVEGEFTDFDEGNRAARVLIGFGAGKAEVSASVRLIDLPA-GPPPL-TFETS 114 (134)
T ss_pred CCCcEEEEEEEEEecCCChhhhhheeecccccEEEEEEEEEecCC-Ccccc-ccccc
Confidence 457899999999999987 47777888889887 55533 34444
No 9
>PF14230 DUF4333: Domain of unknown function (DUF4333)
Probab=30.23 E-value=84 Score=22.62 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=23.6
Q ss_pred CCCCCCeeeeEeecCCCCCCCceEEEEEEeeec
Q 046748 29 LLTVGQAFSGTQNVSNLQKEEAWRVNVRIQGCD 61 (188)
Q Consensus 29 ~L~pGs~F~G~Q~ss~~~k~~~y~V~V~I~~VD 61 (188)
=.++|++|.=.=.. ..+.+.|.|++.++|
T Consensus 51 ~~~~G~tf~C~vt~----~G~~~~v~Vtvt~~d 79 (80)
T PF14230_consen 51 EVEVGATFTCTVTV----DGETQTVTVTVTDVD 79 (80)
T ss_pred cccCCceEEEEEEe----CCEEEEEEEEEECCC
Confidence 35899999988554 367899999999987
No 10
>PF11447 DUF3201: Protein of unknown function (DUF3201); InterPro: IPR024505 This archaeal family of proteins has no known function.; PDB: 1YB3_A.
Probab=30.15 E-value=41 Score=27.69 Aligned_cols=32 Identities=31% Similarity=0.722 Sum_probs=19.8
Q ss_pred CCeeee--eeeeeee-ee-----cCCCCCceeeeeEEEEE
Q 046748 141 YPYIFM--RWKEQYF-VN-----VGTDCGLTIAGFYYVCF 172 (188)
Q Consensus 141 ~~~IfM--RWKE~Fl-v~-----~~~i~GASf~GFYYIc~ 172 (188)
+.|||+ .|.|.=. .| +.-.-||+++|||++.-
T Consensus 34 nayi~lDgeW~em~YPhPaf~ikp~gEvGat~q~~YFvfa 73 (150)
T PF11447_consen 34 NAYIYLDGEWREMKYPHPAFEIKPQGEVGATPQGFYFVFA 73 (150)
T ss_dssp S-EEEETTEEEE--S-EEEEEEETTEEEEEETTEEEEEEE
T ss_pred heeEEecCeeeeecCCCCceeeccCcccccccceEEEEEE
Confidence 346776 7887532 23 23345999999999863
No 11
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=28.55 E-value=24 Score=28.23 Aligned_cols=9 Identities=44% Similarity=0.966 Sum_probs=7.6
Q ss_pred Ceeeeeeee
Q 046748 142 PYIFMRWKE 150 (188)
Q Consensus 142 ~~IfMRWKE 150 (188)
.|.|||||=
T Consensus 19 GY~Y~wwKG 27 (126)
T PF07889_consen 19 GYGYMWWKG 27 (126)
T ss_pred HheeeeecC
Confidence 589999993
No 12
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=20.43 E-value=1.7e+02 Score=26.88 Aligned_cols=30 Identities=7% Similarity=0.308 Sum_probs=22.7
Q ss_pred EEEEEEeeecCCCceeEEEEEEecCCCCCCCeeeeEeEEEecCC
Q 046748 52 RVNVRIQGCDLEHGYLCGTMEALNVPMADTPVVTFWEGEIVDAK 95 (188)
Q Consensus 52 ~V~V~I~~VDl~~~~L~G~l~i~gLt~~~~~iTTfFEGEII~~k 95 (188)
-|+|++++||+++. .-.+..+|+|=+.+..
T Consensus 92 ~IeI~~~~vdidC~--------------~G~ll~v~DGW~LnGe 121 (311)
T PF05428_consen 92 LIEIEFDHVDIDCE--------------GGDLLKVFDGWELNGE 121 (311)
T ss_pred EEEEEEEEeeccCC--------------CCCEEEEEeceEECcc
Confidence 57888888888763 3346689999999875
Done!