Query 046748
Match_columns 188
No_of_seqs 117 out of 167
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 06:39:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eib_A Glucoamylase; beta barr 30.2 44 0.0015 25.1 3.4 23 55-77 29-51 (109)
2 2cov_D Beta-1,3-xylanase; carb 18.9 27 0.00092 25.9 0.3 14 159-173 29-42 (104)
3 2k52_A Uncharacterized protein 17.5 1.5E+02 0.0053 19.6 3.9 17 52-68 51-67 (80)
4 2wgo_A Ranaspumin-2, RSN-2; cy 16.4 74 0.0025 22.8 2.1 15 166-180 56-70 (98)
5 2djm_A Glucoamylase A; beta sa 15.5 1.2E+02 0.0041 22.2 3.1 23 55-77 9-31 (106)
6 3u4v_A Telomerase-associated p 14.9 58 0.002 24.0 1.2 50 70-119 15-73 (117)
7 2k87_A Non-structural protein 14.3 66 0.0023 24.5 1.4 21 153-173 9-29 (116)
8 2wno_A Tumor necrosis factor-i 10.8 3.6E+02 0.012 19.7 4.7 31 49-79 41-73 (149)
9 1nzi_A Complement C1S componen 10.2 2.2E+02 0.0077 20.6 3.3 27 49-75 31-59 (159)
10 3hpe_A Conserved hypothetical 10.1 2.1E+02 0.0073 21.7 3.2 15 64-78 90-104 (164)
No 1
>4eib_A Glucoamylase; beta barrel, starch binding, amylose, hydrolase; 1.86A {Rhizopus oryzae}
Probab=30.18 E-value=44 Score=25.14 Aligned_cols=23 Identities=13% Similarity=0.354 Sum_probs=21.2
Q ss_pred EEEeeecCCCceeEEEEEEecCC
Q 046748 55 VRIQGCDLEHGYLCGTMEALNVP 77 (188)
Q Consensus 55 V~I~~VDl~~~~L~G~l~i~gLt 77 (188)
|.+..+.+.+..|+|++.++||-
T Consensus 29 V~Les~~~~~~~LsGtI~V~NlA 51 (109)
T 4eib_A 29 VQLDSYNYDGSTFSGKIYVKNIA 51 (109)
T ss_dssp EEEEEEEECSSEEEEEEEEECCS
T ss_pred EEEEEEEEeCCEEEEEEEEEecc
Confidence 77779999999999999999996
No 2
>2cov_D Beta-1,3-xylanase; carbohydrate-binding module, family 31 CBM, beta-1,3-xylanas binding protein; 1.25A {Alcaligenes SP}
Probab=18.86 E-value=27 Score=25.92 Aligned_cols=14 Identities=50% Similarity=1.096 Sum_probs=10.9
Q ss_pred CCCceeeeeEEEEEe
Q 046748 159 DCGLTIAGFYYVCFS 173 (188)
Q Consensus 159 i~GASf~GFYYIc~~ 173 (188)
+.|-| |||=|||||
T Consensus 29 d~gWs-AgwnY~CLd 42 (104)
T 2cov_D 29 DKGWS-AGWNYVCLN 42 (104)
T ss_dssp CCCCC-CSSEEEEET
T ss_pred cCCcc-ceeeEEEec
Confidence 34654 799999998
No 3
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=17.50 E-value=1.5e+02 Score=19.56 Aligned_cols=17 Identities=12% Similarity=0.012 Sum_probs=9.8
Q ss_pred EEEEEEeeecCCCceeE
Q 046748 52 RVNVRIQGCDLEHGYLC 68 (188)
Q Consensus 52 ~V~V~I~~VDl~~~~L~ 68 (188)
.|+|.|..||..++.+.
T Consensus 51 ~V~v~V~~vd~~~~~i~ 67 (80)
T 2k52_A 51 EIIVQAIDVRPEKREID 67 (80)
T ss_dssp EEEEEEEEEETTTTEEE
T ss_pred EEEEEEEEEECCCCEEE
Confidence 45566666666555554
No 4
>2wgo_A Ranaspumin-2, RSN-2; cystatin fold, surfactant protein; NMR {Engystomops pustulosus}
Probab=16.37 E-value=74 Score=22.79 Aligned_cols=15 Identities=40% Similarity=0.760 Sum_probs=12.4
Q ss_pred eeEEEEEeccCCeEE
Q 046748 166 GFYYVCFSCSDGSIN 180 (188)
Q Consensus 166 GFYYIc~~~~~G~I~ 180 (188)
-|||++.|-.+|+--
T Consensus 56 rfyyvsvdagdgekc 70 (98)
T 2wgo_A 56 RFYYVSVDAGDGEKC 70 (98)
T ss_dssp SEEEEEEECSSSCEE
T ss_pred eEEEEEEecCCCcee
Confidence 599999999888644
No 5
>2djm_A Glucoamylase A; beta sandwich, anti-parallel, strach binding, carbohydrate binding, sugar binding protein; NMR {Rhizopus oryzae} PDB: 2v8l_A* 2v8m_A* 2vq4_A
Probab=15.51 E-value=1.2e+02 Score=22.21 Aligned_cols=23 Identities=13% Similarity=0.354 Sum_probs=20.9
Q ss_pred EEEeeecCCCceeEEEEEEecCC
Q 046748 55 VRIQGCDLEHGYLCGTMEALNVP 77 (188)
Q Consensus 55 V~I~~VDl~~~~L~G~l~i~gLt 77 (188)
|.+.+|-+....|.|+...+||.
T Consensus 9 V~LE~~~~~~~~l~GtV~V~Nla 31 (106)
T 2djm_A 9 VQLDSYNYDGSTFSGKIYVKNIA 31 (106)
T ss_dssp EEEEEEEESSSCEEEEEEECCSS
T ss_pred EEEEEEEECCCEEEEEEEEeecC
Confidence 77888888899999999999997
No 6
>3u4v_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 1.80A {Tetrahymena thermophila}
Probab=14.91 E-value=58 Score=24.01 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=33.6
Q ss_pred EEEEecCCCCCCCeeeeEeEEEecC---------CCCceeeCCCCCCccchHhhhcCCC
Q 046748 70 TMEALNVPMADTPVVTFWEGEIVDA---------KNYTFYTGKWEATPEDDIRHWTKFP 119 (188)
Q Consensus 70 ~l~i~gLt~~~~~iTTfFEGEII~~---------k~~~F~T~~W~A~~~~D~~HW~kf~ 119 (188)
+|-|.-|.-.....+-=|||.++-. .+|-|.|..=..+.++.|.+|.|..
T Consensus 15 tllisqlqvgknrfsfkfegrvvyksstfqnqqdskyffitaqdannqeinmsfwqkvd 73 (117)
T 3u4v_A 15 TLLISQLQVGKNRFSFKFEGRVVYKSSTFQNQQDSKYFFITAQDANNQEINMSFWQKVD 73 (117)
T ss_dssp EECGGGCCTTCCTTSCEEEEEEEEECCCEECTTSCEEEEEEEECTTSCEEEEEEESSTH
T ss_pred heehhhhhcccceeeEEeeeEEEEeeccccccccccEEEEEeecCCCceechHHHHHhh
Confidence 3455555544444566688988742 2367778665567899999999863
No 7
>2k87_A Non-structural protein 3 of replicase polyprotein; structural genomics, joint center for structural genomics, J protein structure initiative; NMR {Sars coronavirus}
Probab=14.26 E-value=66 Score=24.47 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=17.6
Q ss_pred eeecCCCCCceeeeeEEEEEe
Q 046748 153 FVNVGTDCGLTIAGFYYVCFS 173 (188)
Q Consensus 153 lv~~~~i~GASf~GFYYIc~~ 173 (188)
++|-+-..|++|++|+-+|.+
T Consensus 9 ~~p~~~l~g~~Y~NF~Lvg~~ 29 (116)
T 2k87_A 9 LVPTQPLPNASFDNFKLTCSN 29 (116)
T ss_dssp CEECCCCTTCBCCSEEEEESS
T ss_pred eecccccCCcceeceEEEeCc
Confidence 566667789999999999974
No 8
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}
Probab=10.76 E-value=3.6e+02 Score=19.70 Aligned_cols=31 Identities=19% Similarity=0.154 Sum_probs=24.2
Q ss_pred CceEEEEEEeeecCCCceeEE--EEEEecCCCC
Q 046748 49 EAWRVNVRIQGCDLEHGYLCG--TMEALNVPMA 79 (188)
Q Consensus 49 ~~y~V~V~I~~VDl~~~~L~G--~l~i~gLt~~ 79 (188)
..+.|+++|.+.||+.+.-|. +|+|..-...
T Consensus 41 ~g~~I~L~F~~f~le~~~~C~~D~l~I~dg~~~ 73 (149)
T 2wno_A 41 YGQRIHLSFLDFDLEDDPGCLADYVEIYDSYDD 73 (149)
T ss_dssp TTCEEEEEEEEEECCCCTTCCSSEEEEESSSSS
T ss_pred CCCEEEEEEEEEEecCCCCCCCCEEEEecCCCC
Confidence 346899999999999877774 8999865443
No 9
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=10.15 E-value=2.2e+02 Score=20.55 Aligned_cols=27 Identities=15% Similarity=0.406 Sum_probs=22.1
Q ss_pred CceEEEEEEeeecCCCceeE--EEEEEec
Q 046748 49 EAWRVNVRIQGCDLEHGYLC--GTMEALN 75 (188)
Q Consensus 49 ~~y~V~V~I~~VDl~~~~L~--G~l~i~g 75 (188)
..+.|+++|.+.||+.+.-| -+|+|.+
T Consensus 31 ~g~~I~l~f~~f~le~~~~C~~D~l~i~d 59 (159)
T 1nzi_A 31 EGYGIHLYFTHLDIELSENCAYDSVQIIS 59 (159)
T ss_dssp TTEEEEEEEEEEECCCCGGGCSSEEEEEC
T ss_pred CCCEEEEEEeEEEecCCCCCCCCEEEEEe
Confidence 45789999999999987777 4888875
No 10
>3hpe_A Conserved hypothetical secreted protein; HP1286, erucamide, fatty-acid binding; HET: ERU; 2.10A {Helicobacter pylori} SCOP: b.61.6.0
Probab=10.12 E-value=2.1e+02 Score=21.74 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=13.4
Q ss_pred CceeEEEEEEecCCC
Q 046748 64 HGYLCGTMEALNVPM 78 (188)
Q Consensus 64 ~~~L~G~l~i~gLt~ 78 (188)
...+.|.|+|+|.|.
T Consensus 90 ~~~v~G~LTi~GvTk 104 (164)
T 3hpe_A 90 DGKIHGDLTLHGVTK 104 (164)
T ss_dssp TTEEEEEEEETTEEE
T ss_pred EEEEEEEEEEccEeE
Confidence 678999999999984
Done!