Query 046748
Match_columns 188
No_of_seqs 117 out of 167
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 06:40:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046748.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046748hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gtlm1 b.61.7.1 (M:102-225) H 53.3 35 0.0025 24.3 9.5 59 31-89 5-68 (124)
2 d2gtln1 b.61.7.1 (N:102-229) E 21.9 68 0.005 22.8 5.0 48 30-77 4-56 (128)
3 d1nzia1 b.23.1.1 (A:1-117) Com 20.1 40 0.0029 21.6 3.2 27 49-75 31-59 (117)
4 d1yb3a1 d.296.1.2 (A:2-167) Hy 19.8 24 0.0017 26.4 2.1 32 141-172 40-79 (166)
5 d1t9ha1 b.40.4.5 (A:1-67) Prob 18.8 29 0.0021 21.7 2.1 13 162-174 8-20 (67)
6 d2coca1 b.55.1.1 (A:8-106) FYV 18.5 24 0.0018 21.7 1.6 12 65-76 1-12 (99)
7 d1szba1 b.23.1.1 (A:3-123) Man 16.6 52 0.0038 21.2 3.1 28 49-76 36-65 (121)
8 d1iv8a1 b.71.1.1 (A:654-720) M 16.1 41 0.003 21.3 2.3 15 58-73 3-17 (67)
9 d1ifra_ b.1.16.1 (A:) Lamin A/ 15.6 68 0.0049 21.5 3.6 29 38-79 1-29 (113)
10 d2ix0a3 b.40.4.5 (A:558-644) E 14.9 62 0.0045 20.9 3.1 18 52-69 66-83 (87)
No 1
>d2gtlm1 b.61.7.1 (M:102-225) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}
Probab=53.26 E-value=35 Score=24.34 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=44.0
Q ss_pred CCCCeeeeEeecCCCCCCCceEEEEEEeeecCCC-----ceeEEEEEEecCCCCCCCeeeeEeE
Q 046748 31 TVGQAFSGTQNVSNLQKEEAWRVNVRIQGCDLEH-----GYLCGTMEALNVPMADTPVVTFWEG 89 (188)
Q Consensus 31 ~pGs~F~G~Q~ss~~~k~~~y~V~V~I~~VDl~~-----~~L~G~l~i~gLt~~~~~iTTfFEG 89 (188)
..|++|.|.+.-..=.++.-..+.|.|..++-.. ..|-+.+.+.-..+++...++=-+|
T Consensus 5 ~aGssf~G~~~wd~Ct~r~p~~m~i~Its~~r~~~F~s~~~v~a~v~~~~~~~~~~~~s~~~~G 68 (124)
T d2gtlm1 5 HVGSSYTGLATWTSCEDLNPDHAIVTITAAHRKSFFPNRVWLRATLSYELDEHDHTVSTTQLRG 68 (124)
T ss_dssp CTTCEEEEEEEESSSCSCCSEEEEEEEEEECCCTTCTTBCCEEEEEEEESCTTTCCEEEEEEEE
T ss_pred cCCceEEeEEEEchhhcCCCCeEEEEEEeceeccccCccceEEEEEEEEEccCCeEEEeeeeeE
Confidence 6799999999765334888999999999999875 4678888887665555445554444
No 2
>d2gtln1 b.61.7.1 (N:102-229) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}
Probab=21.90 E-value=68 Score=22.83 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=34.7
Q ss_pred CCCCCeeeeEeecCCCCCCCceEEEEEEeeecCCC-----ceeEEEEEEecCC
Q 046748 30 LTVGQAFSGTQNVSNLQKEEAWRVNVRIQGCDLEH-----GYLCGTMEALNVP 77 (188)
Q Consensus 30 L~pGs~F~G~Q~ss~~~k~~~y~V~V~I~~VDl~~-----~~L~G~l~i~gLt 77 (188)
..+|++|.|.+.-..=.+++-..+.|.|..++-.. -.|-|.+.+.--.
T Consensus 4 ~~AGss~~G~~~wd~Ct~r~p~~~~v~Its~~~~~~F~s~~~vka~v~~~~~~ 56 (128)
T d2gtln1 4 VKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKFFTARIWLRALVESELER 56 (128)
T ss_dssp GCTTCEEEEEEEECSSCCCCSEEEEEEEEEEECCTTCTTCEEEEEEEECEEEC
T ss_pred ccCCcEEEeeEeechhhccCCCeEEEEEEeccccccccccccEEEEEEEEEEc
Confidence 46899999998654334788899999999999774 2445666554433
No 3
>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.15 E-value=40 Score=21.60 Aligned_cols=27 Identities=15% Similarity=0.411 Sum_probs=21.7
Q ss_pred CceEEEEEEeeecCCCceeEE--EEEEec
Q 046748 49 EAWRVNVRIQGCDLEHGYLCG--TMEALN 75 (188)
Q Consensus 49 ~~y~V~V~I~~VDl~~~~L~G--~l~i~g 75 (188)
....|.|+|.++||+...-|. +|+|..
T Consensus 31 ~g~~I~l~f~~f~le~~~~C~~D~l~I~d 59 (117)
T d1nzia1 31 EGYGIHLYFTHLDIELSENCAYDSVQIIS 59 (117)
T ss_dssp TTEEEEEEEEEEECCCCGGGCSSEEEEEC
T ss_pred CCCcEEEEEEeeeEeeecccccceeEEec
Confidence 457899999999999876664 788765
No 4
>d1yb3a1 d.296.1.2 (A:2-167) Hypothetical protein PF0168 {Pyrococcus furiosus [TaxId: 2261]}
Probab=19.84 E-value=24 Score=26.36 Aligned_cols=32 Identities=31% Similarity=0.721 Sum_probs=21.1
Q ss_pred CCeeee--eeeeee-eeec-----CCCCCceeeeeEEEEE
Q 046748 141 YPYIFM--RWKEQY-FVNV-----GTDCGLTIAGFYYVCF 172 (188)
Q Consensus 141 ~~~IfM--RWKE~F-lv~~-----~~i~GASf~GFYYIc~ 172 (188)
.-|||+ +|+|.- -.|. .-.-||+.+|||++.-
T Consensus 40 ~aYl~~DgeW~~m~YPhPaf~ikp~gevGatp~~~yFv~a 79 (166)
T d1yb3a1 40 NAYLYIDGKWEEMKYPHPAFAVKPGGEVGATPQGFYFVFA 79 (166)
T ss_dssp SCEEEETTEEEECCSCEEEEEEETTEEEEEETTEEEEEEE
T ss_pred ceEEEEcCEEEeeeCCCCceeeccCcccccCcceeEEEEE
Confidence 456666 787743 2342 2345999999999864
No 5
>d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=18.84 E-value=29 Score=21.70 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=11.0
Q ss_pred ceeeeeEEEEEec
Q 046748 162 LTIAGFYYVCFSC 174 (188)
Q Consensus 162 ASf~GFYYIc~~~ 174 (188)
+|+.|||||-.++
T Consensus 8 k~~~~~y~V~~e~ 20 (67)
T d1t9ha1 8 KALSGFYYVLDES 20 (67)
T ss_dssp EEETTEEEEEECS
T ss_pred EEECCEEEEEecc
Confidence 6889999998764
No 6
>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.46 E-value=24 Score=21.66 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=9.4
Q ss_pred ceeEEEEEEecC
Q 046748 65 GYLCGTMEALNV 76 (188)
Q Consensus 65 ~~L~G~l~i~gL 76 (188)
|.|||+|..+.-
T Consensus 1 s~~~G~L~~~~~ 12 (99)
T d2coca1 1 SLLCGPLRLSES 12 (99)
T ss_dssp SSSEEEEEEESS
T ss_pred CceEEEEEccCC
Confidence 468999998753
No 7
>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.64 E-value=52 Score=21.18 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=21.9
Q ss_pred CceEEEEEEeeecCCCceeE--EEEEEecC
Q 046748 49 EAWRVNVRIQGCDLEHGYLC--GTMEALNV 76 (188)
Q Consensus 49 ~~y~V~V~I~~VDl~~~~L~--G~l~i~gL 76 (188)
..+.|.++|.+.||+...-| -+|+|..-
T Consensus 36 ~g~~I~l~f~~fdle~~~~C~~D~l~i~dg 65 (121)
T d1szba1 36 PGYRLRLYFTHFDLELSHLCEYDFVKLSSG 65 (121)
T ss_dssp TTEEEEEEEEEEECCCCTTSCSSEEEEESS
T ss_pred CCceeEEEeeeeeeeeeccccccceeeecC
Confidence 45789999999999876655 57888753
No 8
>d1iv8a1 b.71.1.1 (A:654-720) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=16.10 E-value=41 Score=21.31 Aligned_cols=15 Identities=53% Similarity=1.030 Sum_probs=10.8
Q ss_pred eeecCCCceeEEEEEE
Q 046748 58 QGCDLEHGYLCGTMEA 73 (188)
Q Consensus 58 ~~VDl~~~~L~G~l~i 73 (188)
+-.||+++ |||+|+-
T Consensus 3 k~l~l~~g-lcgf~r~ 17 (67)
T d1iv8a1 3 KGLDLEEG-LCGFIRF 17 (67)
T ss_dssp EEECCCTT-EEEEEET
T ss_pred cccchhhc-ceeEEec
Confidence 45677754 8999873
No 9
>d1ifra_ b.1.16.1 (A:) Lamin A/C globular tail domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.58 E-value=68 Score=21.50 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=20.8
Q ss_pred eEeecCCCCCCCceEEEEEEeeecCCCceeEEEEEEecCCCC
Q 046748 38 GTQNVSNLQKEEAWRVNVRIQGCDLEHGYLCGTMEALNVPMA 79 (188)
Q Consensus 38 G~Q~ss~~~k~~~y~V~V~I~~VDl~~~~L~G~l~i~gLt~~ 79 (188)
|.|++++. |.|..||.... +++|.|-.+.
T Consensus 1 ~s~~s~G~---------v~I~E~d~~ge----~VeL~N~~~~ 29 (113)
T d1ifra_ 1 GSHRTSGR---------VAVEEVDEEGK----FVRLRNKSNE 29 (113)
T ss_dssp CEEEECSS---------EEEEEECTTSS----EEEEEECSSS
T ss_pred CCccCCCC---------EEEEEECCCCC----EEEEEeCCCC
Confidence 67877643 78999988742 7888886653
No 10
>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}
Probab=14.89 E-value=62 Score=20.92 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=15.9
Q ss_pred EEEEEEeeecCCCceeEE
Q 046748 52 RVNVRIQGCDLEHGYLCG 69 (188)
Q Consensus 52 ~V~V~I~~VDl~~~~L~G 69 (188)
.|+|.|..||..+..|-+
T Consensus 66 ~V~V~v~~vd~~~r~I~~ 83 (87)
T d2ix0a3 66 VIDVTIAEVRMETRSIIA 83 (87)
T ss_dssp EEEEEEEEEETTTTEEEE
T ss_pred EEEEEEEEEecccCeEEE
Confidence 799999999999987754
Done!