BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046751
         (155 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3E0F|A Chain A, Crystal Structure Of A Putative Metal-Dependent
           Phosphoesterase (Bad_1165) From Bifidobacterium
           Adolescentis Atcc 15703 At 2.40 A Resolution
 pdb|3O0F|A Chain A, Crystal Structure Of A Putative Metal-Dependent
           Phosphoesterase (Bad_1165) From Bifidobacterium
           Adolescentis Atcc 15703 At 1.94 A Resolution
          Length = 301

 Score = 28.9 bits (63), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 20/108 (18%)

Query: 14  WENV-AKIA-GKGVAPGRLHVARAMVEAGHVENLKHAFAD-ISMMGDMHTPQV------V 64
           W++V A++  G+    GR H+A A+V AG  E    AFAD +S     + P        V
Sbjct: 129 WDDVLAQVKEGERTTIGRPHIADALVAAGVYETRSDAFADAVSAKSKYYIPTPSPSTHEV 188

Query: 65  VELIHRTSGLAVLAHPWALKNPAAIIRKLKD--------VGLHRLEVY 104
           +  +    G+ V AH     +P    R L D         GL  LEV+
Sbjct: 189 IAAVKGAGGVVVAAH---AGDPQRNRRLLSDEQLDAXIADGLDGLEVW 233


>pdb|2JK8|A Chain A, Type Iv Secretion System Effector Protein Bepa Complexed
           With A Pyrophosphate Moiety
 pdb|2JK8|B Chain B, Type Iv Secretion System Effector Protein Bepa Complexed
           With A Pyrophosphate Moiety
          Length = 302

 Score = 27.3 bits (59), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)

Query: 14  WENVAKIAGKG-----VAPGRLHVAR-AMVEAGHVENLKHAFADIS 53
           +EN+AK AG       +   R+ VA  A+ E G +E ++H F DIS
Sbjct: 173 FENLAKAAGHQLNFSLITKERMMVASVAVAENGDLEPMQHLFEDIS 218


>pdb|2VZA|A Chain A, Type Iv Secretion System Effector Protein Bepa
 pdb|2VZA|B Chain B, Type Iv Secretion System Effector Protein Bepa
 pdb|2VZA|C Chain C, Type Iv Secretion System Effector Protein Bepa
 pdb|2VZA|D Chain D, Type Iv Secretion System Effector Protein Bepa
 pdb|2VZA|E Chain E, Type Iv Secretion System Effector Protein Bepa
 pdb|2VZA|F Chain F, Type Iv Secretion System Effector Protein Bepa
 pdb|2VZA|G Chain G, Type Iv Secretion System Effector Protein Bepa
 pdb|2VZA|H Chain H, Type Iv Secretion System Effector Protein Bepa
          Length = 298

 Score = 27.3 bits (59), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)

Query: 14  WENVAKIAGKG-----VAPGRLHVAR-AMVEAGHVENLKHAFADIS 53
           +EN+AK AG       +   R+ VA  A+ E G +E ++H F DIS
Sbjct: 165 FENLAKAAGHQLNFSLITKERMMVASVAVAENGDLEPMQHLFEDIS 210


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,039,084
Number of Sequences: 62578
Number of extensions: 148092
Number of successful extensions: 388
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 386
Number of HSP's gapped (non-prelim): 6
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)