BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046751
(155 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O54453|TRPH_SALTY Protein TrpH OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=trpH PE=3 SV=3
Length = 293
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 4 KLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADISMMG------- 56
+L K +P WE ++A G A R H AR +VE G + F G
Sbjct: 121 RLEKAHIPGAWEGALRLANGG-AVTRGHFARFLVECGKAATMADVFKKYLARGKTGYVPP 179
Query: 57 DMHTPQVVVELIHRTSGLAVLAHP 80
T + +++IH + G AVLAHP
Sbjct: 180 QWCTIEQAIDVIHHSGGKAVLAHP 203
>sp|P44176|TRPH_HAEIN Protein TrpH OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=trpH PE=3 SV=1
Length = 274
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 4 KLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADISMMG------- 56
KL K +P ++ +A V R H AR +V+ G V N AF G
Sbjct: 110 KLEKAGIPNAYDGAKALADGEVT--RAHYARYLVQIGKVSNDGQAFKRYLGQGKSAFVKA 167
Query: 57 DMHTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKL 93
+ +E IH G+A++AHP +RKL
Sbjct: 168 EWADIPTAIETIHAAGGIAIIAHPLRYNMTGKWVRKL 204
>sp|P77766|TRPH_ECOLI Protein TrpH OS=Escherichia coli (strain K12) GN=trpH PE=3 SV=1
Length = 293
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 4 KLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADISMMG------- 56
+L K ++P E ++A +G A R H AR +VE G ++ F G
Sbjct: 117 RLEKAQIPGALEGAQRLA-QGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPP 175
Query: 57 DMHTPQVVVELIHRTSGLAVLAHP 80
T + +++IH + G AVLAHP
Sbjct: 176 QWCTIEQAIDVIHHSGGKAVLAHP 199
>sp|Q39LH8|HOA4_BURS3 4-hydroxy-2-oxovalerate aldolase 4 OS=Burkholderia sp. (strain 383)
GN=Bcep18194_C7644 PE=3 SV=1
Length = 342
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 59 HTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKLVGVIFTLQ 118
T ++ + + G+ + H ++L + AI R L D G+ +EV DG L G F
Sbjct: 4 QTNKIYLSDVTLRDGMHAIRHQYSLDSAVAIARALDDAGVDSIEVAHGDG-LSGSSFNYG 62
Query: 119 DGSHYE 124
G+H +
Sbjct: 63 FGAHTD 68
>sp|B2T2S2|HOA_BURPP 4-hydroxy-2-oxovalerate aldolase OS=Burkholderia phytofirmans
(strain DSM 17436 / PsJN) GN=Bphyt_1468 PE=3 SV=1
Length = 347
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 72 SGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKLVGVIFTLQDGSHYE 124
G+ + H ++L++ AI + L + G+ +EV DG L G F G+H +
Sbjct: 17 DGMHAIRHQYSLQSAVAIAQALDEAGVDSIEVAHGDG-LAGSSFNYGFGAHTD 68
>sp|Q4FUQ3|LFTR_PSYA2 Leucyl/phenylalanyl-tRNA--protein transferase OS=Psychrobacter
arcticus (strain DSM 17307 / 273-4) GN=aat PE=3 SV=1
Length = 268
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 62 QVVVELIH-----RTSGLAVLAHPWALKNPAAIIRKLKDVGL-HRLEVYRSDGKLVGVIF 115
Q E+IH R++GL H W + +L G H +EV+ G+LVG ++
Sbjct: 109 QAFNEVIHACSLPRSNGLPEGEHTWIHDDMIEAYNELHAQGFAHSVEVWDDQGQLVGGLY 168
Query: 116 TLQDGSHY 123
L+ GS Y
Sbjct: 169 GLKIGSIY 176
>sp|P17713|STK_HYDVU Tyrosine-protein kinase STK OS=Hydra vulgaris GN=STK PE=2 SV=1
Length = 509
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 14 WENVAKIAGKGVAPGRLHVARAMVEAGHVENLKH 47
W N ++A K + PG + A + EAG ++ L+H
Sbjct: 259 WNNTTQVAVKTLKPGTMSPASFLDEAGVMKKLRH 292
>sp|Q3K5S5|CCA_PSEPF Multifunctional CCA protein OS=Pseudomonas fluorescens (strain
Pf0-1) GN=cca PE=3 SV=1
Length = 409
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 11 PLKWENVAKIA------GKGVAPGRLHVARAMVEAGHVENL--KHAFADISMMGDMHTPQ 62
PL+ VA+ A G VAP L + R + E+G +E L + ++ +IS PQ
Sbjct: 132 PLRVLRVARFAARYAELGFKVAPETLELMRQLSESGELEALTAERSWKEISRALMEDQPQ 191
Query: 63 VVVELIHRTSGLAVLAHP----WALKNPAAIIRKLKDVGLHRLEV 103
V ++++ L VL + + P A ++ D GLH L V
Sbjct: 192 VFIQVLRDCGALKVLMPEVDALFGVPQPEAHHPEI-DSGLHTLSV 235
>sp|Q3SRV8|NUSB_NITWN N utilization substance protein B homolog OS=Nitrobacter
winogradskyi (strain Nb-255 / ATCC 25391) GN=nusB PE=3
SV=1
Length = 161
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 77 LAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKLVGVIFTLQDGSHYESKKEIESIVLEI 136
L+ W LK AAI+R + G + LE +R D V+ D +H +K+ +V +
Sbjct: 87 LSKSWPLKRVAAILRAVLRAGSYELE-HRKDVPARVVVSEYVDVAHAFVEKDEAGMVNAV 145
Query: 137 LCSIIYLMRESEF 149
L I R EF
Sbjct: 146 LDQIARRFRTGEF 158
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,352,276
Number of Sequences: 539616
Number of extensions: 2102352
Number of successful extensions: 5870
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 5866
Number of HSP's gapped (non-prelim): 27
length of query: 155
length of database: 191,569,459
effective HSP length: 107
effective length of query: 48
effective length of database: 133,830,547
effective search space: 6423866256
effective search space used: 6423866256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)